Query 011881
Match_columns 475
No_of_seqs 467 out of 3086
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:15:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 1.9E-44 4E-49 372.3 33.4 317 43-460 228-556 (571)
2 PHA02713 hypothetical protein; 100.0 5E-41 1.1E-45 348.4 30.1 267 94-462 258-545 (557)
3 KOG4441 Proteins containing BT 100.0 7.9E-39 1.7E-43 330.5 25.5 243 69-379 309-555 (571)
4 PLN02153 epithiospecifier prot 100.0 1.1E-37 2.4E-42 307.1 30.7 285 71-411 7-326 (341)
5 TIGR03548 mutarot_permut cycli 100.0 3.5E-37 7.7E-42 301.3 29.6 254 90-412 10-316 (323)
6 PLN02193 nitrile-specifier pro 100.0 1.5E-36 3.2E-41 310.0 33.6 285 92-459 119-419 (470)
7 PLN02193 nitrile-specifier pro 100.0 8.1E-37 1.8E-41 311.9 31.0 279 71-411 151-455 (470)
8 PLN02153 epithiospecifier prot 100.0 1.6E-36 3.4E-41 298.9 29.9 249 166-459 19-293 (341)
9 PHA02713 hypothetical protein; 100.0 4.9E-37 1.1E-41 318.6 22.5 243 71-379 282-542 (557)
10 TIGR03547 muta_rot_YjhT mutatr 100.0 9.3E-36 2E-40 294.4 27.8 255 91-411 15-333 (346)
11 PHA03098 kelch-like protein; P 100.0 1.4E-35 3.1E-40 309.8 29.0 231 171-460 286-521 (534)
12 PRK14131 N-acetylneuraminic ac 100.0 7.1E-35 1.5E-39 290.3 28.3 256 90-411 35-355 (376)
13 KOG4693 Uncharacterized conser 100.0 1.3E-34 2.7E-39 255.6 20.1 256 170-474 14-301 (392)
14 PHA02790 Kelch-like protein; P 100.0 8.2E-34 1.8E-38 290.6 26.3 212 175-458 267-478 (480)
15 PHA03098 kelch-like protein; P 100.0 7.4E-34 1.6E-38 296.9 26.3 224 89-379 290-520 (534)
16 PHA02790 Kelch-like protein; P 100.0 9.1E-34 2E-38 290.2 26.2 206 92-378 270-478 (480)
17 TIGR03548 mutarot_permut cycli 100.0 2.4E-32 5.3E-37 267.2 27.4 214 170-410 4-234 (323)
18 KOG4693 Uncharacterized conser 100.0 7.7E-33 1.7E-37 244.3 20.9 269 91-410 21-313 (392)
19 TIGR03547 muta_rot_YjhT mutatr 100.0 7.2E-32 1.6E-36 266.6 27.5 259 169-464 7-312 (346)
20 PRK14131 N-acetylneuraminic ac 100.0 1.1E-29 2.4E-34 253.0 26.7 258 170-464 29-334 (376)
21 KOG0379 Kelch repeat-containin 100.0 5.3E-27 1.1E-31 239.1 26.7 244 165-459 56-310 (482)
22 KOG1230 Protein containing rep 100.0 2E-27 4.4E-32 221.9 18.8 254 165-458 62-348 (521)
23 KOG4152 Host cell transcriptio 99.9 6.8E-27 1.5E-31 223.1 17.3 323 72-459 18-390 (830)
24 KOG0379 Kelch repeat-containin 99.9 5.7E-26 1.2E-30 231.5 24.6 257 79-398 54-327 (482)
25 KOG1230 Protein containing rep 99.9 3.7E-25 7.9E-30 206.8 17.8 227 93-377 78-347 (521)
26 KOG4152 Host cell transcriptio 99.9 2E-23 4.3E-28 199.6 17.5 266 167-472 30-329 (830)
27 COG3055 Uncharacterized protei 99.8 3.8E-17 8.3E-22 151.6 22.2 256 92-414 45-364 (381)
28 COG3055 Uncharacterized protei 99.6 8.1E-15 1.8E-19 136.2 16.8 263 174-473 41-353 (381)
29 KOG2437 Muskelin [Signal trans 99.4 4.2E-13 9E-18 129.2 4.4 196 167-371 258-472 (723)
30 PF13964 Kelch_6: Kelch motif 99.3 2.7E-12 5.8E-17 88.4 6.4 49 169-217 1-50 (50)
31 PF13964 Kelch_6: Kelch motif 99.3 1E-11 2.3E-16 85.4 5.9 50 216-268 1-50 (50)
32 KOG2437 Muskelin [Signal trans 99.2 9.3E-12 2E-16 120.1 4.0 191 202-412 236-460 (723)
33 PF01344 Kelch_1: Kelch motif; 99.1 1.4E-10 2.9E-15 78.8 4.1 46 169-214 1-47 (47)
34 PF01344 Kelch_1: Kelch motif; 99.0 2.7E-10 5.8E-15 77.3 4.6 47 216-265 1-47 (47)
35 PF13415 Kelch_3: Galactose ox 99.0 8E-10 1.7E-14 75.5 5.8 47 179-225 1-49 (49)
36 PF07646 Kelch_2: Kelch motif; 98.9 2.4E-09 5.2E-14 73.1 6.1 49 216-265 1-49 (49)
37 PF07646 Kelch_2: Kelch motif; 98.9 3.7E-09 8E-14 72.2 6.2 46 169-214 1-49 (49)
38 PF13418 Kelch_4: Galactose ox 98.9 1.9E-09 4.2E-14 73.7 3.6 47 169-215 1-49 (49)
39 smart00612 Kelch Kelch domain. 98.8 5.4E-09 1.2E-13 70.7 5.1 47 181-227 1-47 (47)
40 PF13418 Kelch_4: Galactose ox 98.8 5.8E-09 1.3E-13 71.3 4.7 47 216-265 1-48 (49)
41 PF13415 Kelch_3: Galactose ox 98.8 1.7E-08 3.7E-13 68.9 5.6 43 226-270 1-43 (49)
42 PF07250 Glyoxal_oxid_N: Glyox 98.7 5.4E-07 1.2E-11 82.7 15.1 131 170-331 68-210 (243)
43 TIGR01640 F_box_assoc_1 F-box 98.7 7.9E-06 1.7E-10 75.8 22.4 212 178-421 4-228 (230)
44 smart00612 Kelch Kelch domain. 98.6 5.4E-08 1.2E-12 65.7 5.0 47 228-293 1-47 (47)
45 PLN02772 guanylate kinase 98.5 9.7E-07 2.1E-11 86.1 11.3 83 167-255 22-109 (398)
46 PF13854 Kelch_5: Kelch motif 98.4 7.7E-07 1.7E-11 58.3 5.2 39 167-205 2-42 (42)
47 PF13854 Kelch_5: Kelch motif 98.3 1E-06 2.2E-11 57.8 5.2 42 213-256 1-42 (42)
48 TIGR01640 F_box_assoc_1 F-box 98.3 0.00029 6.2E-09 65.4 23.1 157 194-372 69-230 (230)
49 PF12937 F-box-like: F-box-lik 98.3 4E-07 8.7E-12 61.4 2.8 42 43-84 1-42 (47)
50 PLN03215 ascorbic acid mannose 98.2 0.00064 1.4E-08 66.4 24.0 39 41-79 2-41 (373)
51 PLN02772 guanylate kinase 98.2 1.2E-05 2.6E-10 78.5 10.7 77 343-422 30-109 (398)
52 PF07250 Glyoxal_oxid_N: Glyox 98.0 0.00018 4E-09 66.2 14.7 135 246-408 46-189 (243)
53 smart00256 FBOX A Receptor for 98.0 6.6E-06 1.4E-10 53.5 3.6 39 46-84 1-39 (41)
54 PF00646 F-box: F-box domain; 97.9 2.8E-06 6E-11 57.6 0.5 42 43-84 3-44 (48)
55 PF07893 DUF1668: Protein of u 97.8 0.0092 2E-07 58.7 23.5 129 178-327 75-216 (342)
56 PRK11138 outer membrane biogen 97.6 0.039 8.5E-07 55.6 25.8 189 175-422 156-354 (394)
57 PRK11138 outer membrane biogen 97.5 0.052 1.1E-06 54.7 24.7 168 174-406 200-383 (394)
58 PF07893 DUF1668: Protein of u 97.2 0.023 4.9E-07 55.9 17.3 126 225-382 75-220 (342)
59 PF03089 RAG2: Recombination a 97.2 0.02 4.4E-07 52.8 15.4 106 182-302 40-174 (337)
60 TIGR03300 assembly_YfgL outer 97.2 0.23 4.9E-06 49.7 24.9 169 174-407 185-369 (377)
61 PF13360 PQQ_2: PQQ-like domai 97.1 0.17 3.7E-06 46.7 21.6 155 175-375 72-237 (238)
62 TIGR03300 assembly_YfgL outer 97.0 0.41 8.8E-06 47.8 24.7 155 175-376 141-305 (377)
63 KOG0281 Beta-TrCP (transducin 96.9 0.0097 2.1E-07 56.1 10.7 42 43-84 75-120 (499)
64 cd00094 HX Hemopexin-like repe 96.6 0.21 4.6E-06 44.8 16.8 156 175-373 12-178 (194)
65 PF13360 PQQ_2: PQQ-like domai 96.2 1 2.3E-05 41.3 22.2 167 196-410 4-184 (238)
66 KOG2120 SCF ubiquitin ligase, 95.9 0.0085 1.8E-07 55.9 3.9 39 43-81 98-136 (419)
67 PF12768 Rax2: Cortical protei 95.8 0.13 2.8E-06 48.8 11.8 116 244-379 14-130 (281)
68 PF03089 RAG2: Recombination a 95.2 0.84 1.8E-05 42.5 14.0 76 329-408 80-173 (337)
69 PF03178 CPSF_A: CPSF A subuni 95.1 1.2 2.6E-05 43.4 16.4 155 227-421 42-204 (321)
70 PF12768 Rax2: Cortical protei 94.9 0.54 1.2E-05 44.6 12.5 67 193-263 14-81 (281)
71 PF05096 Glu_cyclase_2: Glutam 94.6 1.3 2.9E-05 41.3 14.1 162 174-379 49-215 (264)
72 KOG2997 F-box protein FBX9 [Ge 94.6 0.029 6.2E-07 52.7 3.0 43 43-85 107-154 (366)
73 PF08450 SGL: SMP-30/Gluconola 94.2 4.5 9.8E-05 37.5 17.3 160 178-378 50-221 (246)
74 cd00094 HX Hemopexin-like repe 93.9 4.6 9.9E-05 36.1 16.7 99 293-408 63-167 (194)
75 PF09910 DUF2139: Uncharacteri 93.8 6 0.00013 37.3 18.6 163 173-372 40-232 (339)
76 PRK00178 tolB translocation pr 93.4 10 0.00022 38.6 23.2 181 194-421 222-406 (430)
77 smart00284 OLF Olfactomedin-li 93.4 6.8 0.00015 36.5 17.4 196 179-405 34-241 (255)
78 PF08450 SGL: SMP-30/Gluconola 93.2 4.3 9.3E-05 37.7 15.3 147 179-372 11-166 (246)
79 TIGR02800 propeller_TolB tol-p 92.9 11 0.00025 37.8 25.9 147 195-378 214-362 (417)
80 TIGR03866 PQQ_ABC_repeats PQQ- 92.0 11 0.00023 35.5 20.1 63 181-260 2-67 (300)
81 KOG2055 WD40 repeat protein [G 92.0 6.6 0.00014 39.1 14.6 147 179-371 268-418 (514)
82 KOG2055 WD40 repeat protein [G 91.6 14 0.0003 37.0 16.2 151 179-373 224-377 (514)
83 PRK13684 Ycf48-like protein; P 91.5 15 0.00033 36.0 20.1 176 176-408 96-279 (334)
84 PRK04922 tolB translocation pr 90.8 21 0.00045 36.4 22.4 183 194-422 227-412 (433)
85 KOG0310 Conserved WD40 repeat- 90.6 13 0.00029 37.2 15.3 144 178-372 78-227 (487)
86 PRK13684 Ycf48-like protein; P 90.2 20 0.00043 35.2 20.5 173 180-407 143-321 (334)
87 PRK04792 tolB translocation pr 90.1 24 0.00053 36.1 22.4 141 246-423 242-384 (448)
88 PF08268 FBA_3: F-box associat 90.0 3.8 8.2E-05 33.9 9.9 87 290-382 3-92 (129)
89 PF02191 OLF: Olfactomedin-lik 89.6 18 0.00039 33.8 17.9 196 178-406 29-237 (250)
90 KOG0274 Cdc4 and related F-box 89.5 19 0.00042 37.7 16.6 44 39-82 104-147 (537)
91 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.4 31 0.00066 36.3 25.1 119 174-324 64-197 (527)
92 PF05096 Glu_cyclase_2: Glutam 89.4 2.8 6.1E-05 39.2 9.2 106 93-257 55-160 (264)
93 TIGR03866 PQQ_ABC_repeats PQQ- 88.7 21 0.00046 33.4 23.4 62 179-257 42-106 (300)
94 PRK04043 tolB translocation pr 88.6 30 0.00065 35.1 23.1 182 195-422 213-401 (419)
95 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.3 14 0.00029 38.9 14.6 127 221-376 64-197 (527)
96 PRK04792 tolB translocation pr 87.3 38 0.00081 34.7 25.9 149 194-378 241-390 (448)
97 TIGR03074 PQQ_membr_DH membran 86.4 39 0.00085 37.1 17.1 35 220-264 188-224 (764)
98 PTZ00421 coronin; Provisional 86.2 46 0.00099 34.6 19.7 107 227-372 138-247 (493)
99 cd00216 PQQ_DH Dehydrogenases 86.0 46 0.001 34.5 23.8 74 173-262 55-138 (488)
100 smart00284 OLF Olfactomedin-li 85.8 30 0.00066 32.3 18.4 160 170-370 74-252 (255)
101 PF14870 PSII_BNR: Photosynthe 85.7 35 0.00076 32.8 15.4 176 178-408 113-295 (302)
102 PRK04922 tolB translocation pr 85.2 46 0.001 33.8 22.1 141 195-373 272-414 (433)
103 PF02191 OLF: Olfactomedin-lik 84.3 36 0.00078 31.8 16.3 160 170-370 69-247 (250)
104 PRK05137 tolB translocation pr 84.3 51 0.0011 33.5 27.9 147 195-378 226-374 (435)
105 PF08268 FBA_3: F-box associat 83.7 10 0.00023 31.2 9.1 65 344-411 2-66 (129)
106 PF03178 CPSF_A: CPSF A subuni 83.4 16 0.00036 35.4 11.8 101 195-327 62-168 (321)
107 TIGR02800 propeller_TolB tol-p 83.4 52 0.0011 33.0 21.9 139 246-422 214-355 (417)
108 PF10282 Lactonase: Lactonase, 83.0 50 0.0011 32.4 22.2 163 219-421 146-324 (345)
109 PRK05137 tolB translocation pr 82.9 58 0.0013 33.1 22.7 149 194-377 269-419 (435)
110 PRK11028 6-phosphogluconolacto 82.7 48 0.001 32.1 23.0 63 179-255 46-111 (330)
111 PF14870 PSII_BNR: Photosynthe 82.3 49 0.0011 31.9 17.3 182 174-409 66-253 (302)
112 PF12217 End_beta_propel: Cata 82.2 37 0.0008 31.5 12.2 214 175-408 21-258 (367)
113 PRK11028 6-phosphogluconolacto 81.3 54 0.0012 31.7 18.9 69 181-263 3-75 (330)
114 PF06433 Me-amine-dh_H: Methyl 81.1 5.3 0.00012 38.7 7.0 55 151-209 65-132 (342)
115 PF10282 Lactonase: Lactonase, 80.9 59 0.0013 31.9 21.4 70 178-256 47-119 (345)
116 KOG3545 Olfactomedin and relat 80.3 49 0.0011 30.6 13.3 193 179-406 30-236 (249)
117 cd00216 PQQ_DH Dehydrogenases 79.1 84 0.0018 32.6 20.0 83 313-408 369-457 (488)
118 cd00200 WD40 WD40 domain, foun 78.9 50 0.0011 29.9 17.8 63 179-256 20-83 (289)
119 PRK00178 tolB translocation pr 78.4 80 0.0017 31.9 22.6 103 246-378 223-327 (430)
120 PLN00181 protein SPA1-RELATED; 76.7 1.3E+02 0.0028 33.4 18.7 140 180-371 545-691 (793)
121 cd00200 WD40 WD40 domain, foun 75.9 61 0.0013 29.3 22.3 62 180-257 63-126 (289)
122 KOG0649 WD40 repeat protein [G 75.2 69 0.0015 29.6 15.8 157 204-409 98-265 (325)
123 PF09910 DUF2139: Uncharacteri 74.4 82 0.0018 30.0 17.8 174 208-407 26-221 (339)
124 PRK03629 tolB translocation pr 71.5 1.2E+02 0.0026 30.8 27.0 181 195-421 223-406 (429)
125 COG4257 Vgb Streptogramin lyas 70.2 99 0.0022 29.2 16.1 57 313-378 257-313 (353)
126 PRK04043 tolB translocation pr 70.1 1.3E+02 0.0028 30.5 20.5 150 194-377 256-407 (419)
127 KOG1332 Vesicle coat complex C 69.2 97 0.0021 28.7 13.3 69 286-378 226-295 (299)
128 PLN00033 photosystem II stabil 68.7 1.4E+02 0.0029 30.2 21.3 52 345-406 336-388 (398)
129 PF02897 Peptidase_S9_N: Proly 68.7 77 0.0017 31.9 12.3 149 194-378 251-412 (414)
130 KOG4341 F-box protein containi 67.7 6.2 0.00013 39.2 3.7 38 42-79 71-108 (483)
131 PF02897 Peptidase_S9_N: Proly 65.7 1.5E+02 0.0033 29.7 14.6 72 174-254 282-357 (414)
132 PRK02889 tolB translocation pr 65.4 1.6E+02 0.0035 29.8 26.6 180 195-421 220-403 (427)
133 COG1520 FOG: WD40-like repeat 61.4 1.7E+02 0.0038 28.8 19.6 109 178-324 110-225 (370)
134 PTZ00420 coronin; Provisional 60.8 2.3E+02 0.005 30.1 18.4 25 347-371 225-249 (568)
135 KOG0316 Conserved WD40 repeat- 58.8 1.1E+02 0.0023 28.3 9.4 95 195-322 81-177 (307)
136 PLN02919 haloacid dehalogenase 58.6 3.4E+02 0.0074 31.4 25.1 171 179-378 635-841 (1057)
137 PLN00033 photosystem II stabil 58.5 2.1E+02 0.0045 28.8 20.5 70 174-261 141-214 (398)
138 PRK01742 tolB translocation pr 58.3 2.1E+02 0.0047 28.9 21.4 61 195-263 228-289 (429)
139 PRK02889 tolB translocation pr 54.9 2.4E+02 0.0053 28.5 20.6 149 194-378 175-324 (427)
140 PF06433 Me-amine-dh_H: Methyl 52.4 79 0.0017 30.9 8.2 74 291-376 248-326 (342)
141 PTZ00421 coronin; Provisional 51.5 3E+02 0.0066 28.6 15.9 62 180-257 138-201 (493)
142 TIGR03074 PQQ_membr_DH membran 51.3 3.8E+02 0.0082 29.7 15.7 72 173-257 310-388 (764)
143 PRK03629 tolB translocation pr 50.2 2.9E+02 0.0063 28.0 22.8 141 246-422 223-364 (429)
144 KOG0310 Conserved WD40 repeat- 49.6 3E+02 0.0065 28.0 15.8 68 177-259 120-190 (487)
145 KOG0289 mRNA splicing factor [ 48.4 3E+02 0.0066 27.7 13.1 118 217-378 348-470 (506)
146 KOG2321 WD40 repeat protein [G 47.9 1.6E+02 0.0035 30.7 9.8 125 213-373 130-261 (703)
147 TIGR02658 TTQ_MADH_Hv methylam 47.5 2.5E+02 0.0054 27.8 11.1 77 180-259 13-90 (352)
148 KOG4378 Nuclear protein COP1 [ 46.7 3.5E+02 0.0075 27.9 12.1 28 343-374 216-243 (673)
149 COG4880 Secreted protein conta 45.1 3.4E+02 0.0074 27.4 11.5 58 190-255 401-458 (603)
150 KOG1036 Mitotic spindle checkp 44.2 3E+02 0.0064 26.4 11.7 107 287-424 59-166 (323)
151 KOG1036 Mitotic spindle checkp 44.1 3E+02 0.0065 26.4 16.9 129 196-372 36-165 (323)
152 COG1520 FOG: WD40-like repeat 42.0 3.5E+02 0.0076 26.6 23.4 154 175-376 64-225 (370)
153 PF13570 PQQ_3: PQQ-like domai 41.5 50 0.0011 20.6 3.6 24 343-371 17-40 (40)
154 PLN00181 protein SPA1-RELATED; 41.1 5.4E+02 0.012 28.5 22.2 61 179-256 587-650 (793)
155 KOG2445 Nuclear pore complex c 40.6 3E+02 0.0065 26.5 9.7 111 253-379 97-218 (361)
156 PF00780 CNH: CNH domain; Int 39.9 3.1E+02 0.0068 25.4 12.3 29 343-377 234-262 (275)
157 PLN02919 haloacid dehalogenase 38.7 6.8E+02 0.015 29.0 24.3 170 178-375 578-775 (1057)
158 KOG1897 Damage-specific DNA bi 37.1 6.6E+02 0.014 28.4 17.7 187 193-421 748-944 (1096)
159 PF12217 End_beta_propel: Cata 36.5 3.7E+02 0.008 25.3 12.9 168 170-357 136-334 (367)
160 PF14781 BBS2_N: Ciliary BBSom 35.7 1.6E+02 0.0035 24.6 6.5 13 245-257 72-84 (136)
161 PLN03215 ascorbic acid mannose 35.6 4.6E+02 0.01 26.1 17.5 87 173-266 203-306 (373)
162 PRK01742 tolB translocation pr 35.5 4.8E+02 0.01 26.3 21.2 18 195-212 272-289 (429)
163 COG2706 3-carboxymuconate cycl 34.9 4.5E+02 0.0097 25.8 24.8 152 245-422 166-324 (346)
164 PF13013 F-box-like_2: F-box-l 32.6 71 0.0015 25.6 3.9 29 43-71 22-50 (109)
165 TIGR02658 TTQ_MADH_Hv methylam 32.4 5.1E+02 0.011 25.6 24.4 28 178-209 115-142 (352)
166 KOG0305 Anaphase promoting com 32.3 5.9E+02 0.013 26.4 11.8 168 196-412 198-368 (484)
167 PRK10115 protease 2; Provision 31.5 7.2E+02 0.016 27.1 15.9 153 194-379 246-403 (686)
168 COG4257 Vgb Streptogramin lyas 30.4 1.7E+02 0.0037 27.7 6.4 60 245-327 253-314 (353)
169 KOG0318 WD40 repeat stress pro 29.9 3.6E+02 0.0078 27.9 9.0 65 179-257 454-520 (603)
170 KOG0289 mRNA splicing factor [ 29.4 6.1E+02 0.013 25.7 14.5 117 173-327 351-471 (506)
171 COG3823 Glutamine cyclotransfe 29.2 4.5E+02 0.0096 24.0 12.5 192 173-408 49-249 (262)
172 KOG0266 WD40 repeat-containing 28.3 6.6E+02 0.014 25.7 17.2 66 179-258 257-322 (456)
173 KOG1520 Predicted alkaloid syn 27.7 6.2E+02 0.013 25.2 10.1 81 289-379 123-216 (376)
174 KOG1332 Vesicle coat complex C 26.1 5.4E+02 0.012 24.0 12.3 47 181-232 176-238 (299)
175 KOG0646 WD40 repeat protein [G 25.7 7.3E+02 0.016 25.3 12.1 27 343-373 284-310 (476)
176 PF07433 DUF1513: Protein of u 25.6 6.2E+02 0.013 24.5 10.4 122 167-321 2-128 (305)
177 KOG0649 WD40 repeat protein [G 25.2 5.6E+02 0.012 23.9 15.3 79 166-261 112-193 (325)
178 KOG3545 Olfactomedin and relat 24.7 5.7E+02 0.012 23.8 13.6 40 334-378 65-107 (249)
179 KOG0278 Serine/threonine kinas 22.9 6.3E+02 0.014 23.7 10.8 55 291-357 234-288 (334)
180 PF03088 Str_synth: Strictosid 22.8 3.5E+02 0.0076 20.7 6.0 32 348-379 10-54 (89)
181 TIGR03032 conserved hypothetic 22.1 5.4E+02 0.012 25.0 8.3 99 286-407 155-259 (335)
182 KOG0308 Conserved WD40 repeat- 21.8 2.6E+02 0.0055 29.8 6.4 67 177-257 127-204 (735)
183 KOG2048 WD40 repeat protein [G 21.1 1E+03 0.023 25.5 16.2 157 177-377 391-558 (691)
184 PF07734 FBA_1: F-box associat 20.8 5.3E+02 0.011 21.9 13.3 85 289-377 2-90 (164)
185 KOG0772 Uncharacterized conser 20.5 9.8E+02 0.021 24.9 17.1 123 215-371 315-446 (641)
186 PF15525 DUF4652: Domain of un 20.4 5.7E+02 0.012 22.7 7.4 64 293-377 88-155 (200)
187 KOG0281 Beta-TrCP (transducin 20.3 4E+02 0.0087 26.1 7.0 80 196-303 341-420 (499)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.9e-44 Score=372.26 Aligned_cols=317 Identities=26% Similarity=0.479 Sum_probs=255.2
Q ss_pred CCCCCHHHHHHHhccCChh-h---hHHHHHhhhhhhhhcCCh-hhHHhhhccC-CCccEEEEEEeecC-C--ceeeEEec
Q 011881 43 IPSLPDELSIQILARVPRI-F---YLNLRAVSRKWKATVTSP-ELFEVRKELG-TTEEWLYILTKVSD-D--RLLWHALD 113 (475)
Q Consensus 43 ~~~LP~dl~~~iL~~lp~~-~---l~~l~~vck~W~~l~~s~-~~~~~r~~~~-~~~~~lyv~gg~~~-~--~~~~~~yd 113 (475)
.|.||+..+.++....+.. . ...+-.-.++|..+.... ..+..|.... ...+.||++||... . ...+.+||
T Consensus 228 ~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd 307 (571)
T KOG4441|consen 228 LPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYD 307 (571)
T ss_pred ccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEec
Confidence 3677777776666555411 1 111112223454443321 1333333333 45689999999875 2 23789999
Q ss_pred CCCCceeeCCCCCCCcchhhhcccccccceeeccceeeeeEeeecccCCCCCCCCCccceeEEEeCCEEEEEcCCC-CCC
Q 011881 114 PLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWNDTLPQMPFCGCAIGAVDGCLYVLGGFS-RTS 192 (475)
Q Consensus 114 ~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~-~~~ 192 (475)
|.++.|..+++|+.+ |..+++++++|.||++||.+ +..
T Consensus 308 ~~~~~w~~~a~m~~~-----------------------------------------r~~~~~~~~~~~lYv~GG~~~~~~ 346 (571)
T KOG4441|consen 308 PKTNEWSSLAPMPSP-----------------------------------------RCRVGVAVLNGKLYVVGGYDSGSD 346 (571)
T ss_pred CCcCcEeecCCCCcc-----------------------------------------cccccEEEECCEEEEEccccCCCc
Confidence 999999999999864 88999999999999999999 688
Q ss_pred CcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCC
Q 011881 193 AMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGL 272 (475)
Q Consensus 193 ~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 272 (475)
.++++++||+.+++|+.+++|+.+|..+++++++|+||++||.+ +...++++|+|||.+++|+.+++|+.+|++
T Consensus 347 ~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~d----g~~~l~svE~YDp~~~~W~~va~m~~~r~~-- 420 (571)
T KOG4441|consen 347 RLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFD----GEKSLNSVECYDPVTNKWTPVAPMLTRRSG-- 420 (571)
T ss_pred ccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccc----cccccccEEEecCCCCcccccCCCCcceee--
Confidence 89999999999999999999999999999999999999999984 566789999999999999999999999998
Q ss_pred CccccccccccceeeEEEeCCEEEEeccCCCCC-ceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEE
Q 011881 273 PNAFFADMLKPIATGMTSYMGRLCVPQSLYSWP-FFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELY 351 (475)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~ly 351 (475)
+++++++|+||++||.++.. .+..+ ++|||.+++|+.+++ |.. +|.+++ +++++++||
T Consensus 421 -------------~gv~~~~g~iYi~GG~~~~~~~l~sv--e~YDP~t~~W~~~~~-M~~----~R~~~g-~a~~~~~iY 479 (571)
T KOG4441|consen 421 -------------HGVAVLGGKLYIIGGGDGSSNCLNSV--ECYDPETNTWTLIAP-MNT----RRSGFG-VAVLNGKIY 479 (571)
T ss_pred -------------eEEEEECCEEEEEcCcCCCccccceE--EEEcCCCCceeecCC-ccc----ccccce-EEEECCEEE
Confidence 99999999999999998877 55444 999999999999998 654 555555 899999999
Q ss_pred EEcCCCCC-CCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCCCCCCCCccc
Q 011881 352 AFDPSSSL-NSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPRDHLGSTSSS 430 (475)
Q Consensus 352 v~GG~~~~-~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~~~~~~~~~~ 430 (475)
++||.+.. ....+++|||++++|+.+. .+..+|..+++++.++++|++||..++. .+.
T Consensus 480 vvGG~~~~~~~~~VE~ydp~~~~W~~v~------~m~~~rs~~g~~~~~~~ly~vGG~~~~~----------~l~----- 538 (571)
T KOG4441|consen 480 VVGGFDGTSALSSVERYDPETNQWTMVA------PMTSPRSAVGVVVLGGKLYAVGGFDGNN----------NLN----- 538 (571)
T ss_pred EECCccCCCccceEEEEcCCCCceeEcc------cCccccccccEEEECCEEEEEecccCcc----------ccc-----
Confidence 99998762 2357999999999999985 3677889999999999999999966653 222
Q ss_pred cccCCcccccccccccccccceeeeeeecc
Q 011881 431 SVSLSADSLHEHSDSLAESDTVVWKAIATR 460 (475)
Q Consensus 431 ~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 460 (475)
.+| .|||.+++|+..+.+
T Consensus 539 --------~ve----~ydp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 539 --------TVE----CYDPETDTWTEVTEP 556 (571)
T ss_pred --------eeE----EcCCCCCceeeCCCc
Confidence 233 679999999999994
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=5e-41 Score=348.42 Aligned_cols=267 Identities=16% Similarity=0.224 Sum_probs=216.8
Q ss_pred cEEEEEEeecC-CceeeEEecCCCCceeeCCCCCCCcchhhhcccccccceeeccceeeeeEeeecccCCCCCCCCCccc
Q 011881 94 EWLYILTKVSD-DRLLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWNDTLPQMPFCG 172 (475)
Q Consensus 94 ~~lyv~gg~~~-~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~pr~~ 172 (475)
..+++.||... ....+++|||.+++|..+++||.+ |..
T Consensus 258 ~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~-----------------------------------------r~~ 296 (557)
T PHA02713 258 LCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNH-----------------------------------------IIN 296 (557)
T ss_pred eEEEEecCccccCCCCEEEEeCCCCeEEECCCCCcc-----------------------------------------ccc
Confidence 34555554211 112578999999999999988864 778
Q ss_pred eeEEEeCCEEEEEcCCC-CCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEE
Q 011881 173 CAIGAVDGCLYVLGGFS-RTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVF 251 (475)
Q Consensus 173 ~~~~~~~~~lyv~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~y 251 (475)
+++++++++||++||.+ +....+++++|||.+++|+.+++||.+|..+++++++++||++||.+ +...++++++|
T Consensus 297 ~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~----~~~~~~sve~Y 372 (557)
T PHA02713 297 YASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQN----GTNVERTIECY 372 (557)
T ss_pred eEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcC----CCCCCceEEEE
Confidence 88999999999999985 34457899999999999999999999999999999999999999974 22357889999
Q ss_pred eCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCce----------------eccceEEE
Q 011881 252 DPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFF----------------VDVGGEIY 315 (475)
Q Consensus 252 d~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~----------------~~~~~~~y 315 (475)
||.+++|+.+++||.+|.. +++++++|+||++||.++.... .....++|
T Consensus 373 dp~~~~W~~~~~mp~~r~~---------------~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~Y 437 (557)
T PHA02713 373 TMGDDKWKMLPDMPIALSS---------------YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRY 437 (557)
T ss_pred ECCCCeEEECCCCCccccc---------------ccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEE
Confidence 9999999999999999998 8889999999999998643210 01235999
Q ss_pred eCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCC--CCeEEEEeCCC-CcEEEcCCcCccccCCCCCCC
Q 011881 316 DPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLN--SAKIKVYDQKE-DTWKVVIGKVPIRDFADSESP 392 (475)
Q Consensus 316 d~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~--~~~v~~yd~~~-~~W~~v~~~~p~~~~~~~r~~ 392 (475)
||++++|+.+++ |.. ++.+++ +++++|+|||+||.+... .+.+++|||++ ++|+.+. .++.+|..
T Consensus 438 DP~td~W~~v~~-m~~----~r~~~~-~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~------~m~~~r~~ 505 (557)
T PHA02713 438 DTVNNIWETLPN-FWT----GTIRPG-VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT------TTESRLSA 505 (557)
T ss_pred CCCCCeEeecCC-CCc----ccccCc-EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc------ccCccccc
Confidence 999999999987 543 444444 789999999999975322 24689999999 8999985 36778999
Q ss_pred eEEEEeCCeEEEEeecCCCCeeEEEecCCCCCCCCccccccCCcccccccccccccccceeeeeeecccC
Q 011881 393 YLLSAFHGKLHVLTKDASRNISILRADPRDHLGSTSSSSVSLSADSLHEHSDSLAESDTVVWKAIATRNF 462 (475)
Q Consensus 393 ~~~~~~~~~l~v~GG~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~ 462 (475)
+++++++|+||++||..+.. .+| .|||.+++|+.+++...
T Consensus 506 ~~~~~~~~~iyv~Gg~~~~~--------------------------~~e----~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 506 LHTILHDNTIMMLHCYESYM--------------------------LQD----TFNVYTYEWNHICHQHS 545 (557)
T ss_pred ceeEEECCEEEEEeeeccee--------------------------ehh----hcCcccccccchhhhcC
Confidence 99999999999999976521 133 68999999999998543
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=7.9e-39 Score=330.51 Aligned_cols=243 Identities=27% Similarity=0.521 Sum_probs=206.6
Q ss_pred hhhhhhhhcCChhhHHhhhccCCCccEEEEEEeecC-Cc--eeeEEecCCCCceeeCCCCCCCcchhhhcccccccceee
Q 011881 69 VSRKWKATVTSPELFEVRKELGTTEEWLYILTKVSD-DR--LLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMV 145 (475)
Q Consensus 69 vck~W~~l~~s~~~~~~r~~~~~~~~~lyv~gg~~~-~~--~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (475)
..+.|..+..-| .++.+....+.++.||++||.+. .. ..+++|||.+++|..+++|+..
T Consensus 309 ~~~~w~~~a~m~-~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~----------------- 370 (571)
T KOG4441|consen 309 KTNEWSSLAPMP-SPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK----------------- 370 (571)
T ss_pred CcCcEeecCCCC-cccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc-----------------
Confidence 345788874433 23334444556899999999983 32 3899999999999999999985
Q ss_pred ccceeeeeEeeecccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE
Q 011881 146 GSGIKIAEVVRGWLGWNDTLPQMPFCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL 225 (475)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~ 225 (475)
|..+++++++|.||++||.++...++++++|||.+++|+.+++|+.+|.+|+++++
T Consensus 371 ------------------------R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~ 426 (571)
T KOG4441|consen 371 ------------------------RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL 426 (571)
T ss_pred ------------------------cccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCC
Q 011881 226 NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWP 305 (475)
Q Consensus 226 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~ 305 (475)
+++||++||.+.. ...++++++|||.+++|+.+++|+.+|.+ +++++++++||++||+++..
T Consensus 427 ~g~iYi~GG~~~~---~~~l~sve~YDP~t~~W~~~~~M~~~R~~---------------~g~a~~~~~iYvvGG~~~~~ 488 (571)
T KOG4441|consen 427 GGKLYIIGGGDGS---SNCLNSVECYDPETNTWTLIAPMNTRRSG---------------FGVAVLNGKIYVVGGFDGTS 488 (571)
T ss_pred CCEEEEEcCcCCC---ccccceEEEEcCCCCceeecCCccccccc---------------ceEEEECCEEEEECCccCCC
Confidence 9999999998532 22789999999999999999999999999 89999999999999999844
Q ss_pred ceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCC-CCCeEEEEeCCCCcEEEcCC
Q 011881 306 FFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSL-NSAKIKVYDQKEDTWKVVIG 379 (475)
Q Consensus 306 ~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~~ 379 (475)
... .+++|||++++|+.+.+ |.. ++...+ +++.+++||++||.++. ..+.++.|||++++|+....
T Consensus 489 ~~~--~VE~ydp~~~~W~~v~~-m~~--~rs~~g---~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 489 ALS--SVERYDPETNQWTMVAP-MTS--PRSAVG---VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred ccc--eEEEEcCCCCceeEccc-Ccc--cccccc---EEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 443 35999999999999976 543 333333 78999999999997554 45799999999999999853
No 4
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.1e-37 Score=307.05 Aligned_cols=285 Identities=17% Similarity=0.270 Sum_probs=208.9
Q ss_pred hhhhhhcCCh-hhHHhhhc--cCCCccEEEEEEeecCC----ceeeEEecCCCCceeeCCCCCCCcchhhhcccccccce
Q 011881 71 RKWKATVTSP-ELFEVRKE--LGTTEEWLYILTKVSDD----RLLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWN 143 (475)
Q Consensus 71 k~W~~l~~s~-~~~~~r~~--~~~~~~~lyv~gg~~~~----~~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~ 143 (475)
.+|..+.... ..|..|.. ....++.|||+||.... ..++++||+.+++|..+++++..
T Consensus 7 ~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--------------- 71 (341)
T PLN02153 7 GGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDV--------------- 71 (341)
T ss_pred CeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCC---------------
Confidence 3588875532 23444444 33458899999997432 13799999999999998876532
Q ss_pred eeccceeeeeEeeecccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCC-----CCccc
Q 011881 144 MVGSGIKIAEVVRGWLGWNDTLPQMPFCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSM-----SVGRA 218 (475)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~-----p~~R~ 218 (475)
+...+.+|++++++++||+|||.+....++++++||+.+++|+.+++| |.+|.
T Consensus 72 ----------------------p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~ 129 (341)
T PLN02153 72 ----------------------PRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEART 129 (341)
T ss_pred ----------------------CCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCce
Confidence 111234788899999999999987777788999999999999999887 88999
Q ss_pred eeeeEEECCEEEEEeceecCCC--CcccCCeEEEEeCCCCCeEecCCCC---ccccCCCCccccccccccceeeEEEeCC
Q 011881 219 YCKTGILNDKLYVVGGVSRARG--GLTPLQSAEVFDPTTDAWSEVPSMP---FSRAQGLPNAFFADMLKPIATGMTSYMG 293 (475)
Q Consensus 219 ~~~~~~~~~~iyv~GG~~~~~~--~~~~~~~~~~yd~~t~~W~~~~~~p---~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (475)
.|++++++++|||+||...... ....++++++||+++++|+.++++. .+|.+ ++++++++
T Consensus 130 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~---------------~~~~~~~~ 194 (341)
T PLN02153 130 FHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGG---------------AGFAVVQG 194 (341)
T ss_pred eeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCc---------------ceEEEECC
Confidence 9999999999999999853221 1123578999999999999998764 66777 88889999
Q ss_pred EEEEeccCCCC------CceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCC---------
Q 011881 294 RLCVPQSLYSW------PFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSS--------- 358 (475)
Q Consensus 294 ~iyv~GG~~~~------~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~--------- 358 (475)
+|||+||.... ........++||+++++|++++. .. ..|.++.+++ +++++++|||+||...
T Consensus 195 ~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~-~g-~~P~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~ 271 (341)
T PLN02153 195 KIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET-TG-AKPSARSVFA-HAVVGKYIIIFGGEVWPDLKGHLGP 271 (341)
T ss_pred eEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc-cC-CCCCCcceee-eEEECCEEEEECcccCCcccccccc
Confidence 99999986421 11111235999999999999875 22 1255565555 6889999999999631
Q ss_pred -CCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEE-Ee-CCeEEEEeecCCC
Q 011881 359 -LNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLS-AF-HGKLHVLTKDASR 411 (475)
Q Consensus 359 -~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~-~~-~~~l~v~GG~~~~ 411 (475)
...+++++||+++++|+++.. ...+.+|..+..++.+ +. +++|||+||..+.
T Consensus 272 ~~~~n~v~~~d~~~~~W~~~~~-~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 272 GTLSNEGYALDTETLVWEKLGE-CGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPT 326 (341)
T ss_pred ccccccEEEEEcCccEEEeccC-CCCCCCCCccccccccccCCcceEEEEcCcCCC
Confidence 123689999999999999853 1111244445444443 33 4589999998654
No 5
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=3.5e-37 Score=301.35 Aligned_cols=254 Identities=17% Similarity=0.214 Sum_probs=202.2
Q ss_pred CCCccEEEEEEeecCCc------------eeeEEec-CCC-CceeeCCCCCCCcchhhhcccccccceeeccceeeeeEe
Q 011881 90 GTTEEWLYILTKVSDDR------------LLWHALD-PLS-KRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVV 155 (475)
Q Consensus 90 ~~~~~~lyv~gg~~~~~------------~~~~~yd-~~~-~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (475)
++.++.||++||.+... .+++.|+ +.. .+|..+++||.+
T Consensus 10 ~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~--------------------------- 62 (323)
T TIGR03548 10 GIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYE--------------------------- 62 (323)
T ss_pred eEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCcc---------------------------
Confidence 34578999999975432 1566664 443 379999888764
Q ss_pred eecccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcE----EeCCCCCCccceeeeEEECCEEEE
Q 011881 156 RGWLGWNDTLPQMPFCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTW----NEATSMSVGRAYCKTGILNDKLYV 231 (475)
Q Consensus 156 ~~~~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W----~~~~~~p~~R~~~~~~~~~~~iyv 231 (475)
|..++++++++.||++||.++...++++++||+.+++| +.+++||.+|..|++++++++|||
T Consensus 63 --------------r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv 128 (323)
T TIGR03548 63 --------------AAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYV 128 (323)
T ss_pred --------------ccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEE
Confidence 77777888999999999998777789999999999998 788999999999999999999999
Q ss_pred EeceecCCCCcccCCeEEEEeCCCCCeEecCCCCc-cccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceecc
Q 011881 232 VGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPF-SRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDV 310 (475)
Q Consensus 232 ~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 310 (475)
+||... ...++++++||+.+++|+++++||. +|.. +++++++++|||+||.++.. ..+
T Consensus 129 ~GG~~~----~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~---------------~~~~~~~~~iYv~GG~~~~~-~~~- 187 (323)
T TIGR03548 129 GGGNRN----GKPSNKSYLFNLETQEWFELPDFPGEPRVQ---------------PVCVKLQNELYVFGGGSNIA-YTD- 187 (323)
T ss_pred EeCcCC----CccCceEEEEcCCCCCeeECCCCCCCCCCc---------------ceEEEECCEEEEEcCCCCcc-ccc-
Confidence 999742 2246899999999999999999884 6776 78889999999999986532 222
Q ss_pred ceEEEeCCCCceEEcCCCCCC-CCCCccCCCeEEEEECCeEEEEcCCCCC------------------------------
Q 011881 311 GGEIYDPDTNSWVEMPIGMGE-GWPARQAGTKLSVVLDGELYAFDPSSSL------------------------------ 359 (475)
Q Consensus 311 ~~~~yd~~~~~W~~~~~~~~~-~~p~~~~~~~~~~~~~~~lyv~GG~~~~------------------------------ 359 (475)
.++||+++++|+.+++ +.. ..|+.+.+++.+++.+++|||+||.+..
T Consensus 188 -~~~yd~~~~~W~~~~~-~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (323)
T TIGR03548 188 -GYKYSPKKNQWQKVAD-PTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPE 265 (323)
T ss_pred -eEEEecCCCeeEECCC-CCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCcc
Confidence 3899999999999987 432 2355555555455668999999997531
Q ss_pred ---CCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCC
Q 011881 360 ---NSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRN 412 (475)
Q Consensus 360 ---~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~ 412 (475)
..+++++||+++++|+.+. .+| ..+|..++++.++++||++||+.++.
T Consensus 266 ~~~~~~~v~~yd~~~~~W~~~~-~~p----~~~r~~~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 266 WYNWNRKILIYNVRTGKWKSIG-NSP----FFARCGAALLLTGNNIFSINGELKPG 316 (323)
T ss_pred ccCcCceEEEEECCCCeeeEcc-ccc----ccccCchheEEECCEEEEEeccccCC
Confidence 1257999999999999985 222 24688889999999999999987764
No 6
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.5e-36 Score=309.95 Aligned_cols=285 Identities=15% Similarity=0.225 Sum_probs=218.6
Q ss_pred CccEEEEEEeecCCce---eeEEecCCC----CceeeCCCCCCCcchhhhcccccccceeeccceeeeeEeeecccCCCC
Q 011881 92 TEEWLYILTKVSDDRL---LWHALDPLS----KRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWNDT 164 (475)
Q Consensus 92 ~~~~lyv~gg~~~~~~---~~~~yd~~~----~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
.++.|+.|+|...... .++.+++.+ ++|..++++..
T Consensus 119 ~~~~ivgf~G~~~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~------------------------------------- 161 (470)
T PLN02193 119 QGGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGE------------------------------------- 161 (470)
T ss_pred cCCeEEEEeccCCCcEEeeEEEEecCCChhhhceEEEcccCCC-------------------------------------
Confidence 4677888887654332 455667755 79998876543
Q ss_pred CCCCCccceeEEEeCCEEEEEcCCCC-C-CCcceEEEEeCCCCcEEeCCC---CCC-ccceeeeEEECCEEEEEeceecC
Q 011881 165 LPQMPFCGCAIGAVDGCLYVLGGFSR-T-SAMRCVRRYDPIANTWNEATS---MSV-GRAYCKTGILNDKLYVVGGVSRA 238 (475)
Q Consensus 165 ~~p~pr~~~~~~~~~~~lyv~GG~~~-~-~~~~~~~~yd~~t~~W~~~~~---~p~-~R~~~~~~~~~~~iyv~GG~~~~ 238 (475)
.|.||..|+++++++.||++||... . ...+++++||+.+++|+.+++ +|. +|.+|++++++++|||+||...
T Consensus 162 -~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~- 239 (470)
T PLN02193 162 -GPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDA- 239 (470)
T ss_pred -CCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCC-
Confidence 3557999999999999999999753 2 234689999999999998864 343 3568899999999999999742
Q ss_pred CCCcccCCeEEEEeCCCCCeEecCCC---CccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEE
Q 011881 239 RGGLTPLQSAEVFDPTTDAWSEVPSM---PFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIY 315 (475)
Q Consensus 239 ~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~y 315 (475)
...++++++||+.+++|++++++ |.+|.. |++++.+++|||+||.+....+.++ ++|
T Consensus 240 ---~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~---------------h~~~~~~~~iYv~GG~~~~~~~~~~--~~y 299 (470)
T PLN02193 240 ---SRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSF---------------HSMAADEENVYVFGGVSATARLKTL--DSY 299 (470)
T ss_pred ---CCCCccEEEEECCCCEEEEcCcCCCCCCCccc---------------eEEEEECCEEEEECCCCCCCCcceE--EEE
Confidence 23578999999999999999887 788988 8899999999999998766555544 899
Q ss_pred eCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEE
Q 011881 316 DPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLL 395 (475)
Q Consensus 316 d~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~ 395 (475)
|+.+++|+.++.+.. .|.++.+++ +++++++||++||.+....+++++||+++++|+++.. + +..|.+|..|++
T Consensus 300 d~~t~~W~~~~~~~~--~~~~R~~~~-~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~-~--g~~P~~R~~~~~ 373 (470)
T PLN02193 300 NIVDKKWFHCSTPGD--SFSIRGGAG-LEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVET-F--GVRPSERSVFAS 373 (470)
T ss_pred ECCCCEEEeCCCCCC--CCCCCCCcE-EEEECCcEEEEECCCCCccCceEEEECCCCEEEEecc-C--CCCCCCcceeEE
Confidence 999999999875221 244555554 6788999999999765556899999999999999853 2 234678899999
Q ss_pred EEeCCeEEEEeecCCCCeeEEEecCCCCCCCCccccccCCcccccccccccccccceeeeeeec
Q 011881 396 SAFHGKLHVLTKDASRNISILRADPRDHLGSTSSSSVSLSADSLHEHSDSLAESDTVVWKAIAT 459 (475)
Q Consensus 396 ~~~~~~l~v~GG~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 459 (475)
+.++++||||||....... .... .....+..|+||+.+++|+.++.
T Consensus 374 ~~~~~~iyv~GG~~~~~~~-------~~~~-----------~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 374 AAVGKHIVIFGGEIAMDPL-------AHVG-----------PGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred EEECCEEEEECCccCCccc-------cccC-----------ccceeccEEEEEcCcCEEEEccc
Confidence 9999999999998653200 0000 01122345789999999998874
No 7
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=8.1e-37 Score=311.87 Aligned_cols=279 Identities=17% Similarity=0.274 Sum_probs=212.4
Q ss_pred hhhhhhcCChhhHHhhhccC--CCccEEEEEEeecCC-c---eeeEEecCCCCceeeCCCCCCCcchhhhccccccccee
Q 011881 71 RKWKATVTSPELFEVRKELG--TTEEWLYILTKVSDD-R---LLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNM 144 (475)
Q Consensus 71 k~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~-~---~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~ 144 (475)
.+|..+....+.+..|..+. ..++.||++||.... . .++++||+.+++|..++++...
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~---------------- 214 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDV---------------- 214 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCC----------------
Confidence 58988765544555555443 458899999997421 1 2689999999999987654321
Q ss_pred eccceeeeeEeeecccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCC---CCccceee
Q 011881 145 VGSGIKIAEVVRGWLGWNDTLPQMPFCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSM---SVGRAYCK 221 (475)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~R~~~~ 221 (475)
|+.+|..|++++++++|||+||.+....++++++||+.+++|+.++++ |.+|..|+
T Consensus 215 ---------------------P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 215 ---------------------PHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred ---------------------CCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 122356888999999999999998777789999999999999999888 88999999
Q ss_pred eEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCC---CCccccCCCCccccccccccceeeEEEeCCEEEEe
Q 011881 222 TGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPS---MPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVP 298 (475)
Q Consensus 222 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~ 298 (475)
+++++++|||+||.+. ...++++++||+.+++|+.++. +|.+|.. +++++++++||++
T Consensus 274 ~~~~~~~iYv~GG~~~----~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~---------------~~~~~~~gkiyvi 334 (470)
T PLN02193 274 MAADEENVYVFGGVSA----TARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG---------------AGLEVVQGKVWVV 334 (470)
T ss_pred EEEECCEEEEECCCCC----CCCcceEEEEECCCCEEEeCCCCCCCCCCCCC---------------cEEEEECCcEEEE
Confidence 9999999999999843 2346899999999999999865 5677877 8888999999999
Q ss_pred ccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCC----------CCCCeEEEEe
Q 011881 299 QSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSS----------LNSAKIKVYD 368 (475)
Q Consensus 299 GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~----------~~~~~v~~yd 368 (475)
||.++.. +.+ .++||+++++|++++. +.. .|.++.+++ +++++++|||+||... ...+++++||
T Consensus 335 GG~~g~~-~~d--v~~yD~~t~~W~~~~~-~g~-~P~~R~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D 408 (470)
T PLN02193 335 YGFNGCE-VDD--VHYYDPVQDKWTQVET-FGV-RPSERSVFA-SAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALD 408 (470)
T ss_pred ECCCCCc-cCc--eEEEECCCCEEEEecc-CCC-CCCCcceeE-EEEECCEEEEECCccCCccccccCccceeccEEEEE
Confidence 9976532 333 4999999999999876 322 245555555 6789999999999742 1236899999
Q ss_pred CCCCcEEEcCCcCccccCCCCCCCeEEE--EeC--CeEEEEeecCCC
Q 011881 369 QKEDTWKVVIGKVPIRDFADSESPYLLS--AFH--GKLHVLTKDASR 411 (475)
Q Consensus 369 ~~~~~W~~v~~~~p~~~~~~~r~~~~~~--~~~--~~l~v~GG~~~~ 411 (475)
+.+++|+++.........|.+|..++++ .+. +.|++|||....
T Consensus 409 ~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~ 455 (470)
T PLN02193 409 TETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPT 455 (470)
T ss_pred cCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCc
Confidence 9999999985322122346667655432 333 459999998643
No 8
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.6e-36 Score=298.94 Aligned_cols=249 Identities=19% Similarity=0.316 Sum_probs=190.9
Q ss_pred CCCCccceeEEEeCCEEEEEcCCCC--CCCcceEEEEeCCCCcEEeCCCCC-Ccc---ceeeeEEECCEEEEEeceecCC
Q 011881 166 PQMPFCGCAIGAVDGCLYVLGGFSR--TSAMRCVRRYDPIANTWNEATSMS-VGR---AYCKTGILNDKLYVVGGVSRAR 239 (475)
Q Consensus 166 ~p~pr~~~~~~~~~~~lyv~GG~~~--~~~~~~~~~yd~~t~~W~~~~~~p-~~R---~~~~~~~~~~~iyv~GG~~~~~ 239 (475)
.|.||..|++++++++|||+||... ....+++++||+.+++|+.+++++ .+| .+|++++++++||||||...
T Consensus 19 ~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~-- 96 (341)
T PLN02153 19 GPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDE-- 96 (341)
T ss_pred CCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCC--
Confidence 4567999999999999999999853 234579999999999999998764 344 37888999999999999742
Q ss_pred CCcccCCeEEEEeCCCCCeEecCCC-----CccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCC------cee
Q 011881 240 GGLTPLQSAEVFDPTTDAWSEVPSM-----PFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWP------FFV 308 (475)
Q Consensus 240 ~~~~~~~~~~~yd~~t~~W~~~~~~-----p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~------~~~ 308 (475)
...++++++||+++++|+.+++| |.+|.. |++++.+++|||+||.+... .+.
T Consensus 97 --~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~---------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 159 (341)
T PLN02153 97 --KREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTF---------------HSMASDENHVYVFGGVSKGGLMKTPERFR 159 (341)
T ss_pred --CCccCcEEEEECCCCEEEEeccCCCCCCCCCcee---------------eEEEEECCEEEEECCccCCCccCCCcccc
Confidence 23468999999999999999877 778887 89999999999999986432 222
Q ss_pred ccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCC---------CCCCeEEEEeCCCCcEEEcCC
Q 011881 309 DVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSS---------LNSAKIKVYDQKEDTWKVVIG 379 (475)
Q Consensus 309 ~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~---------~~~~~v~~yd~~~~~W~~v~~ 379 (475)
+ .++||+++++|+.++. +.. .|.++.+++ +++++++|||+||... ...+++++||+++++|+++..
T Consensus 160 ~--v~~yd~~~~~W~~l~~-~~~-~~~~r~~~~-~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 160 T--IEAYNIADGKWVQLPD-PGE-NFEKRGGAG-FAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred e--EEEEECCCCeEeeCCC-CCC-CCCCCCcce-EEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc
Confidence 2 4899999999999886 332 134555554 6789999999988531 124689999999999999853
Q ss_pred cCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCCCCCCCCccccccCCcccccccccccccccceeeeeeec
Q 011881 380 KVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPRDHLGSTSSSSVSLSADSLHEHSDSLAESDTVVWKAIAT 459 (475)
Q Consensus 380 ~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 459 (475)
.+.+|.+|..+++++++++||||||......... .. .....+..|+||+++++|+.+..
T Consensus 235 ---~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-------~~-----------~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 235 ---TGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGH-------LG-----------PGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred ---cCCCCCCcceeeeEEECCEEEEECcccCCccccc-------cc-----------cccccccEEEEEcCccEEEeccC
Confidence 2235778899999999999999999754321000 00 01122345689999999999863
No 9
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4.9e-37 Score=318.62 Aligned_cols=243 Identities=14% Similarity=0.249 Sum_probs=196.6
Q ss_pred hhhhhhcCChhhHHhhhccCCCccEEEEEEeecCC---ceeeEEecCCCCceeeCCCCCCCcchhhhcccccccceeecc
Q 011881 71 RKWKATVTSPELFEVRKELGTTEEWLYILTKVSDD---RLLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGS 147 (475)
Q Consensus 71 k~W~~l~~s~~~~~~r~~~~~~~~~lyv~gg~~~~---~~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (475)
++|..+..-|. +.........++.||++||.... ...+++|||.+++|..+++|+.+
T Consensus 282 ~~W~~l~~mp~-~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~------------------- 341 (557)
T PHA02713 282 MEYSVISTIPN-HIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN------------------- 341 (557)
T ss_pred CeEEECCCCCc-cccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch-------------------
Confidence 45777633221 22233445568999999997422 23789999999999999999874
Q ss_pred ceeeeeEeeecccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECC
Q 011881 148 GIKIAEVVRGWLGWNDTLPQMPFCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILND 227 (475)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~ 227 (475)
|..+++++++|+||++||.++...++++++|||.+++|+.+++||.+|..++++++++
T Consensus 342 ----------------------R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g 399 (557)
T PHA02713 342 ----------------------RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQ 399 (557)
T ss_pred ----------------------hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECC
Confidence 8889999999999999999876678899999999999999999999999999999999
Q ss_pred EEEEEeceecCCC--------------CcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCC
Q 011881 228 KLYVVGGVSRARG--------------GLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMG 293 (475)
Q Consensus 228 ~iyv~GG~~~~~~--------------~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (475)
+|||+||.+.... ....++++++|||++++|+.+++|+.+|.. +++++++|
T Consensus 400 ~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~---------------~~~~~~~~ 464 (557)
T PHA02713 400 YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR---------------PGVVSHKD 464 (557)
T ss_pred EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc---------------CcEEEECC
Confidence 9999999753210 011367899999999999999999999998 88999999
Q ss_pred EEEEeccCCCCCceeccceEEEeCCC-CceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCC
Q 011881 294 RLCVPQSLYSWPFFVDVGGEIYDPDT-NSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 294 ~iyv~GG~~~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 372 (475)
+|||+||.++..... ...++|||++ ++|+.+++ |+ .++.+++ +++++|+||++||.++. ..+++||+.++
T Consensus 465 ~IYv~GG~~~~~~~~-~~ve~Ydp~~~~~W~~~~~-m~----~~r~~~~-~~~~~~~iyv~Gg~~~~--~~~e~yd~~~~ 535 (557)
T PHA02713 465 DIYVVCDIKDEKNVK-TCIFRYNTNTYNGWELITT-TE----SRLSALH-TILHDNTIMMLHCYESY--MLQDTFNVYTY 535 (557)
T ss_pred EEEEEeCCCCCCccc-eeEEEecCCCCCCeeEccc-cC----cccccce-eEEECCEEEEEeeecce--eehhhcCcccc
Confidence 999999986533221 2348999999 89999987 54 3444444 78999999999997653 47999999999
Q ss_pred cEEEcCC
Q 011881 373 TWKVVIG 379 (475)
Q Consensus 373 ~W~~v~~ 379 (475)
+|+.+.+
T Consensus 536 ~W~~~~~ 542 (557)
T PHA02713 536 EWNHICH 542 (557)
T ss_pred cccchhh
Confidence 9998853
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=9.3e-36 Score=294.38 Aligned_cols=255 Identities=20% Similarity=0.330 Sum_probs=192.9
Q ss_pred CCccEEEEEEeecCCceeeEEecC--CCCceeeCCCCCCCcchhhhcccccccceeeccceeeeeEeeecccCCCCCCCC
Q 011881 91 TTEEWLYILTKVSDDRLLWHALDP--LSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWNDTLPQM 168 (475)
Q Consensus 91 ~~~~~lyv~gg~~~~~~~~~~yd~--~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 168 (475)
..++.|||+||... ..+++||+ .+++|..+++||..
T Consensus 15 ~~~~~vyv~GG~~~--~~~~~~d~~~~~~~W~~l~~~p~~---------------------------------------- 52 (346)
T TIGR03547 15 IIGDKVYVGLGSAG--TSWYKLDLKKPSKGWQKIADFPGG---------------------------------------- 52 (346)
T ss_pred EECCEEEEEccccC--CeeEEEECCCCCCCceECCCCCCC----------------------------------------
Confidence 45899999999743 36888885 67899999988842
Q ss_pred CccceeEEEeCCEEEEEcCCCCC------CCcceEEEEeCCCCcEEeCC-CCCCccceeeeE-EECCEEEEEeceecCCC
Q 011881 169 PFCGCAIGAVDGCLYVLGGFSRT------SAMRCVRRYDPIANTWNEAT-SMSVGRAYCKTG-ILNDKLYVVGGVSRARG 240 (475)
Q Consensus 169 pr~~~~~~~~~~~lyv~GG~~~~------~~~~~~~~yd~~t~~W~~~~-~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~ 240 (475)
+|..+++++++++|||+||.... ..++++++||+.+++|+.++ ++|.+|.+++++ +++++|||+||.+....
T Consensus 53 ~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~ 132 (346)
T TIGR03547 53 PRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIF 132 (346)
T ss_pred CcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHH
Confidence 47889999999999999998532 14689999999999999997 567777777776 68999999999752100
Q ss_pred ------------------------------CcccCCeEEEEeCCCCCeEecCCCCc-cccCCCCccccccccccceeeEE
Q 011881 241 ------------------------------GLTPLQSAEVFDPTTDAWSEVPSMPF-SRAQGLPNAFFADMLKPIATGMT 289 (475)
Q Consensus 241 ------------------------------~~~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~~~~~~~~~~~ 289 (475)
....++++++|||.+++|+.+++||. +|.. ++++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~---------------~~~~ 197 (346)
T TIGR03547 133 DGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAG---------------SAIV 197 (346)
T ss_pred HHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCC---------------ceEE
Confidence 00124789999999999999999996 5777 8888
Q ss_pred EeCCEEEEeccCCCCCceeccceEEE--eCCCCceEEcCCCCCCCC---CCccCCCeEEEEECCeEEEEcCCCCCC----
Q 011881 290 SYMGRLCVPQSLYSWPFFVDVGGEIY--DPDTNSWVEMPIGMGEGW---PARQAGTKLSVVLDGELYAFDPSSSLN---- 360 (475)
Q Consensus 290 ~~~~~iyv~GG~~~~~~~~~~~~~~y--d~~~~~W~~~~~~~~~~~---p~~~~~~~~~~~~~~~lyv~GG~~~~~---- 360 (475)
+++++|||+||...... .....+.| |+++++|+++++ |+.+. +..+.++ .+++++++|||+||.....
T Consensus 198 ~~~~~iyv~GG~~~~~~-~~~~~~~y~~~~~~~~W~~~~~-m~~~r~~~~~~~~~~-~a~~~~~~Iyv~GG~~~~~~~~~ 274 (346)
T TIGR03547 198 HKGNKLLLINGEIKPGL-RTAEVKQYLFTGGKLEWNKLPP-LPPPKSSSQEGLAGA-FAGISNGVLLVAGGANFPGAQEN 274 (346)
T ss_pred EECCEEEEEeeeeCCCc-cchheEEEEecCCCceeeecCC-CCCCCCCccccccEE-eeeEECCEEEEeecCCCCCchhh
Confidence 99999999999754321 11223445 567889999887 54311 1111222 2578899999999974211
Q ss_pred --------------CCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCC
Q 011881 361 --------------SAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASR 411 (475)
Q Consensus 361 --------------~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~ 411 (475)
...+++||+++++|+.+. .+|.+|..+++++++|+|||+||....
T Consensus 275 ~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~------~lp~~~~~~~~~~~~~~iyv~GG~~~~ 333 (346)
T TIGR03547 275 YKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG------KLPQGLAYGVSVSWNNGVLLIGGENSG 333 (346)
T ss_pred hhcCCccccCCCCceeEeeEEEecCCcccccC------CCCCCceeeEEEEcCCEEEEEeccCCC
Confidence 136899999999999985 255667778888899999999998654
No 11
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=309.82 Aligned_cols=231 Identities=18% Similarity=0.363 Sum_probs=188.6
Q ss_pred cceeEEEeCCEEEEEcCCCCC-CCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEE
Q 011881 171 CGCAIGAVDGCLYVLGGFSRT-SAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAE 249 (475)
Q Consensus 171 ~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 249 (475)
..++++++++.||++||.+.. ...+++++||+.+++|+.+++||.+|.+|++++++++||++||.. +....++++
T Consensus 286 ~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~----~~~~~~~v~ 361 (534)
T PHA03098 286 YCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIY----NSISLNTVE 361 (534)
T ss_pred ccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCC----CCEecceEE
Confidence 346788999999999998754 346799999999999999999999999999999999999999975 233578999
Q ss_pred EEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCC
Q 011881 250 VFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGM 329 (475)
Q Consensus 250 ~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 329 (475)
+||+.+++|+.+++||.+|.. +++++++++|||+||........ ...++||+.+++|+.+++ +
T Consensus 362 ~yd~~~~~W~~~~~lp~~r~~---------------~~~~~~~~~iYv~GG~~~~~~~~-~~v~~yd~~t~~W~~~~~-~ 424 (534)
T PHA03098 362 SWKPGESKWREEPPLIFPRYN---------------PCVVNVNNLIYVIGGISKNDELL-KTVECFSLNTNKWSKGSP-L 424 (534)
T ss_pred EEcCCCCceeeCCCcCcCCcc---------------ceEEEECCEEEEECCcCCCCccc-ceEEEEeCCCCeeeecCC-C
Confidence 999999999999999999998 88899999999999965432211 234999999999999876 4
Q ss_pred CCCCCCccCCCeEEEEECCeEEEEcCCCCCC----CCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEE
Q 011881 330 GEGWPARQAGTKLSVVLDGELYAFDPSSSLN----SAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVL 405 (475)
Q Consensus 330 ~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~----~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~ 405 (475)
|.++.+++ +++++++|||+||..... .+.+++||+++++|+.++. ++.+|..++++.++++|||+
T Consensus 425 ----p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~------~~~~r~~~~~~~~~~~iyv~ 493 (534)
T PHA03098 425 ----PISHYGGC-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS------LNFPRINASLCIFNNKIYVV 493 (534)
T ss_pred ----CccccCce-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC------CCcccccceEEEECCEEEEE
Confidence 44555555 788999999999975322 3569999999999999852 45567888889999999999
Q ss_pred eecCCCCeeEEEecCCCCCCCCccccccCCcccccccccccccccceeeeeeecc
Q 011881 406 TKDASRNISILRADPRDHLGSTSSSSVSLSADSLHEHSDSLAESDTVVWKAIATR 460 (475)
Q Consensus 406 GG~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 460 (475)
||..+... ....+.||+.+++|+.++..
T Consensus 494 GG~~~~~~---------------------------~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 494 GGDKYEYY---------------------------INEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred cCCcCCcc---------------------------cceeEEEeCCCCEEEecCCC
Confidence 99765420 01134789999999998873
No 12
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=7.1e-35 Score=290.33 Aligned_cols=256 Identities=19% Similarity=0.315 Sum_probs=192.0
Q ss_pred CCCccEEEEEEeecCCceeeEEecCC--CCceeeCCCCCCCcchhhhcccccccceeeccceeeeeEeeecccCCCCCCC
Q 011881 90 GTTEEWLYILTKVSDDRLLWHALDPL--SKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWNDTLPQ 167 (475)
Q Consensus 90 ~~~~~~lyv~gg~~~~~~~~~~yd~~--~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 167 (475)
...++.|||+||.... .++.||+. +++|..++++|..
T Consensus 35 ~~~~~~iyv~gG~~~~--~~~~~d~~~~~~~W~~l~~~p~~--------------------------------------- 73 (376)
T PRK14131 35 AIDNNTVYVGLGSAGT--SWYKLDLNAPSKGWTKIAAFPGG--------------------------------------- 73 (376)
T ss_pred EEECCEEEEEeCCCCC--eEEEEECCCCCCCeEECCcCCCC---------------------------------------
Confidence 3458899999997443 57888875 5789999887742
Q ss_pred CCccceeEEEeCCEEEEEcCCCC------CCCcceEEEEeCCCCcEEeCCC-CCCccceeeeEE-ECCEEEEEeceecCC
Q 011881 168 MPFCGCAIGAVDGCLYVLGGFSR------TSAMRCVRRYDPIANTWNEATS-MSVGRAYCKTGI-LNDKLYVVGGVSRAR 239 (475)
Q Consensus 168 ~pr~~~~~~~~~~~lyv~GG~~~------~~~~~~~~~yd~~t~~W~~~~~-~p~~R~~~~~~~-~~~~iyv~GG~~~~~ 239 (475)
||..+++++++++|||+||... ...++++++||+.+++|+.+++ +|.+|.+|++++ .+++|||+||.+...
T Consensus 74 -~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~ 152 (376)
T PRK14131 74 -PREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNI 152 (376)
T ss_pred -CcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHH
Confidence 4888899999999999999864 1236889999999999999985 467777888777 899999999974210
Q ss_pred -C-----------------------------CcccCCeEEEEeCCCCCeEecCCCCc-cccCCCCccccccccccceeeE
Q 011881 240 -G-----------------------------GLTPLQSAEVFDPTTDAWSEVPSMPF-SRAQGLPNAFFADMLKPIATGM 288 (475)
Q Consensus 240 -~-----------------------------~~~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~~~~~~~~~~ 288 (475)
+ .....+++++||+.+++|+.++++|. +|.. +++
T Consensus 153 ~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~---------------~a~ 217 (376)
T PRK14131 153 FDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAG---------------SAV 217 (376)
T ss_pred HHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCc---------------ceE
Confidence 0 00124789999999999999999996 5666 788
Q ss_pred EEeCCEEEEeccCCCCC-ceeccceEEEeCCCCceEEcCCCCCCCCCCc----cC-CCeEEEEECCeEEEEcCCCCCC--
Q 011881 289 TSYMGRLCVPQSLYSWP-FFVDVGGEIYDPDTNSWVEMPIGMGEGWPAR----QA-GTKLSVVLDGELYAFDPSSSLN-- 360 (475)
Q Consensus 289 ~~~~~~iyv~GG~~~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~----~~-~~~~~~~~~~~lyv~GG~~~~~-- 360 (475)
+.++++|||+||..... ....+-...||+++++|+++++ ++. |+. +. ....+++.+++|||+||.....
T Consensus 218 v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~p~--~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~ 294 (376)
T PRK14131 218 VIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD-LPP--APGGSSQEGVAGAFAGYSNGVLLVAGGANFPGAR 294 (376)
T ss_pred EEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC-CCC--CCcCCcCCccceEeceeECCEEEEeeccCCCCCh
Confidence 89999999999964322 1111212467889999999886 543 211 11 1122567899999999974211
Q ss_pred ----------------CCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCC
Q 011881 361 ----------------SAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASR 411 (475)
Q Consensus 361 ----------------~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~ 411 (475)
...+++||+++++|+.+. .+|.+|..+++++++|+|||+||..+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~------~lp~~r~~~~av~~~~~iyv~GG~~~~ 355 (376)
T PRK14131 295 ENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG------ELPQGLAYGVSVSWNNGVLLIGGETAG 355 (376)
T ss_pred hhhhcCCcccccCCcceeehheEEecCCcccccC------cCCCCccceEEEEeCCEEEEEcCCCCC
Confidence 124689999999999874 356778888888999999999997553
No 13
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=255.60 Aligned_cols=256 Identities=19% Similarity=0.247 Sum_probs=206.8
Q ss_pred ccceeEEEeCCEEEEEcCCCCC-----CCcceEEEEeCCCCcEEeCCC-------------CCCccceeeeEEECCEEEE
Q 011881 170 FCGCAIGAVDGCLYVLGGFSRT-----SAMRCVRRYDPIANTWNEATS-------------MSVGRAYCKTGILNDKLYV 231 (475)
Q Consensus 170 r~~~~~~~~~~~lyv~GG~~~~-----~~~~~~~~yd~~t~~W~~~~~-------------~p~~R~~~~~~~~~~~iyv 231 (475)
|..|++++++.+||-|||+... ..--++.++|..+-+|+++++ .|..|++|+.+.+++++|+
T Consensus 14 RVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yv 93 (392)
T KOG4693|consen 14 RVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYV 93 (392)
T ss_pred cccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEE
Confidence 7899999999999999998532 224489999999999999876 4677999999999999999
Q ss_pred EeceecCCCCcccCCeEEEEeCCCCCeEec---CCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCcee
Q 011881 232 VGGVSRARGGLTPLQSAEVFDPTTDAWSEV---PSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFV 308 (475)
Q Consensus 232 ~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~ 308 (475)
.||.+++ ....+.++.|||++++|.+. .-+|..|.+ |+++++++.+|||||+.......
T Consensus 94 WGGRND~---egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDG---------------HsAcV~gn~MyiFGGye~~a~~F 155 (392)
T KOG4693|consen 94 WGGRNDD---EGACNLLYEFDPETNVWKKPEVEGFVPGARDG---------------HSACVWGNQMYIFGGYEEDAQRF 155 (392)
T ss_pred EcCccCc---ccccceeeeeccccccccccceeeecCCccCC---------------ceeeEECcEEEEecChHHHHHhh
Confidence 9998743 34678999999999999975 347888998 99999999999999986654333
Q ss_pred ccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCC----------CCCeEEEEeCCCCcEEEcC
Q 011881 309 DVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSL----------NSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 309 ~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~----------~~~~v~~yd~~~~~W~~v~ 378 (475)
+....++|..|.+|+.+.. ... +|+-|-.|+ +.++++.+|||||.... .-+.|..+|..++.|.+-+
T Consensus 156 S~d~h~ld~~TmtWr~~~T-kg~-PprwRDFH~-a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p 232 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHT-KGD-PPRWRDFHT-ASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTP 232 (392)
T ss_pred hccceeEeccceeeeehhc-cCC-Cchhhhhhh-hhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCC
Confidence 3445899999999999986 333 244444444 78899999999997432 2268999999999999853
Q ss_pred CcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCCCCCCCCccccccCCcccccccccccccccceeeeeee
Q 011881 379 GKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPRDHLGSTSSSSVSLSADSLHEHSDSLAESDTVVWKAIA 458 (475)
Q Consensus 379 ~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 458 (475)
+....|..|..|++.+++++||+|||+.+.- +.+-++.|.|||.+..|+.|.
T Consensus 233 ---~~~~~P~GRRSHS~fvYng~~Y~FGGYng~l-------------------------n~HfndLy~FdP~t~~W~~I~ 284 (392)
T KOG4693|consen 233 ---ENTMKPGGRRSHSTFVYNGKMYMFGGYNGTL-------------------------NVHFNDLYCFDPKTSMWSVIS 284 (392)
T ss_pred ---CCCcCCCcccccceEEEcceEEEecccchhh-------------------------hhhhcceeecccccchheeee
Confidence 2335688899999999999999999987653 235566789999999999999
Q ss_pred cc-cCCCcceeeeEEee
Q 011881 459 TR-NFGSAELVSCQVLD 474 (475)
Q Consensus 459 ~~-~~~~~~~~~~~~~~ 474 (475)
++ -..+++..+|+++.
T Consensus 285 ~~Gk~P~aRRRqC~~v~ 301 (392)
T KOG4693|consen 285 VRGKYPSARRRQCSVVS 301 (392)
T ss_pred ccCCCCCcccceeEEEE
Confidence 96 66677778888763
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=8.2e-34 Score=290.55 Aligned_cols=212 Identities=20% Similarity=0.280 Sum_probs=177.7
Q ss_pred EEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 175 IGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 175 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
++..++.||++||.++....+.+++|||.+++|..+++|+.+|..+++++++++||++||.+. .+++++||+.
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~-------~~sve~ydp~ 339 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN-------PTSVERWFHG 339 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC-------CCceEEEECC
Confidence 445899999999987767788999999999999999999999999999999999999999731 2579999999
Q ss_pred CCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCC
Q 011881 255 TDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWP 334 (475)
Q Consensus 255 t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p 334 (475)
+++|+.+++||.+|.. +++++++|+||++||.++.. ..+++|||++++|+.+++ |+
T Consensus 340 ~n~W~~~~~l~~~r~~---------------~~~~~~~g~IYviGG~~~~~----~~ve~ydp~~~~W~~~~~-m~---- 395 (480)
T PHA02790 340 DAAWVNMPSLLKPRCN---------------PAVASINNVIYVIGGHSETD----TTTEYLLPNHDQWQFGPS-TY---- 395 (480)
T ss_pred CCeEEECCCCCCCCcc---------------cEEEEECCEEEEecCcCCCC----ccEEEEeCCCCEEEeCCC-CC----
Confidence 9999999999999998 89999999999999976432 235899999999999887 53
Q ss_pred CccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCee
Q 011881 335 ARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNIS 414 (475)
Q Consensus 335 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~ 414 (475)
.++.+++ +++++|+|||+|| .+++||+++++|+.++ .++.+|..+++++++|+|||+||..+..
T Consensus 396 ~~r~~~~-~~~~~~~IYv~GG-------~~e~ydp~~~~W~~~~------~m~~~r~~~~~~v~~~~IYviGG~~~~~-- 459 (480)
T PHA02790 396 YPHYKSC-ALVFGRRLFLVGR-------NAEFYCESSNTWTLID------DPIYPRDNPELIIVDNKLLLIGGFYRGS-- 459 (480)
T ss_pred Cccccce-EEEECCEEEEECC-------ceEEecCCCCcEeEcC------CCCCCccccEEEEECCEEEEECCcCCCc--
Confidence 3444444 6789999999998 3689999999999985 3567788899999999999999975321
Q ss_pred EEEecCCCCCCCCccccccCCcccccccccccccccceeeeeee
Q 011881 415 ILRADPRDHLGSTSSSSVSLSADSLHEHSDSLAESDTVVWKAIA 458 (475)
Q Consensus 415 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 458 (475)
.. +.+| .|||++++|+...
T Consensus 460 --------~~-------------~~ve----~Yd~~~~~W~~~~ 478 (480)
T PHA02790 460 --------YI-------------DTIE----VYNNRTYSWNIWD 478 (480)
T ss_pred --------cc-------------ceEE----EEECCCCeEEecC
Confidence 00 1233 6899999998653
No 15
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=7.4e-34 Score=296.88 Aligned_cols=224 Identities=21% Similarity=0.381 Sum_probs=188.6
Q ss_pred cCCCccEEEEEEeecCCc---eeeEEecCCCCceeeCCCCCCCcchhhhcccccccceeeccceeeeeEeeecccCCCCC
Q 011881 89 LGTTEEWLYILTKVSDDR---LLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWNDTL 165 (475)
Q Consensus 89 ~~~~~~~lyv~gg~~~~~---~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (475)
....++.||++||..... ..++.||+.+++|..+++++.+
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~------------------------------------- 332 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP------------------------------------- 332 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc-------------------------------------
Confidence 344588999999986433 2789999999999999888764
Q ss_pred CCCCccceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccC
Q 011881 166 PQMPFCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPL 245 (475)
Q Consensus 166 ~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 245 (475)
|..|++++++++||++||.++....+++++||+.+++|+.+++||.+|.+|++++++++|||+||..... ..+
T Consensus 333 ----R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~---~~~ 405 (534)
T PHA03098 333 ----RKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKND---ELL 405 (534)
T ss_pred ----cccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCC---ccc
Confidence 8889999999999999999876778899999999999999999999999999999999999999975322 246
Q ss_pred CeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCc---eeccceEEEeCCCCce
Q 011881 246 QSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPF---FVDVGGEIYDPDTNSW 322 (475)
Q Consensus 246 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~---~~~~~~~~yd~~~~~W 322 (475)
+++++||+.+++|+.++++|.+|.+ ++++..+++|||+||...... +.. .++||+.+++|
T Consensus 406 ~~v~~yd~~t~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv~GG~~~~~~~~~~~~--v~~yd~~~~~W 468 (534)
T PHA03098 406 KTVECFSLNTNKWSKGSPLPISHYG---------------GCAIYHDGKIYVIGGISYIDNIKVYNI--VESYNPVTNKW 468 (534)
T ss_pred ceEEEEeCCCCeeeecCCCCccccC---------------ceEEEECCEEEEECCccCCCCCcccce--EEEecCCCCce
Confidence 8999999999999999999999988 888999999999999764332 222 59999999999
Q ss_pred EEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCC-CCeEEEEeCCCCcEEEcCC
Q 011881 323 VEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLN-SAKIKVYDQKEDTWKVVIG 379 (475)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~-~~~v~~yd~~~~~W~~v~~ 379 (475)
+.+++ ++ .++.+++ +++.+++|||+||..... .+++++||+++++|+.+..
T Consensus 469 ~~~~~-~~----~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 469 TELSS-LN----FPRINAS-LCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred eeCCC-CC----cccccce-EEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 99876 43 3344444 677899999999976433 5789999999999999853
No 16
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=9.1e-34 Score=290.22 Aligned_cols=206 Identities=20% Similarity=0.312 Sum_probs=176.4
Q ss_pred CccEEEEEEeecCCc--eeeEEecCCCCceeeCCCCCCCcchhhhcccccccceeeccceeeeeEeeecccCCCCCCCCC
Q 011881 92 TEEWLYILTKVSDDR--LLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWNDTLPQMP 169 (475)
Q Consensus 92 ~~~~lyv~gg~~~~~--~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p 169 (475)
.++.||++||.+... ..+++|||.+++|..+++|+.+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~----------------------------------------- 308 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP----------------------------------------- 308 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch-----------------------------------------
Confidence 578999999975432 3789999999999999999864
Q ss_pred ccceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEE
Q 011881 170 FCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAE 249 (475)
Q Consensus 170 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 249 (475)
|..+++++++++||++||.++ .+++++||+.+++|+.+++||.+|.++++++++++|||+||... ..+.++
T Consensus 309 r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~------~~~~ve 379 (480)
T PHA02790 309 RLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSE------TDTTTE 379 (480)
T ss_pred hhcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCC------CCccEE
Confidence 778888999999999999753 25789999999999999999999999999999999999999742 136799
Q ss_pred EEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCC
Q 011881 250 VFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGM 329 (475)
Q Consensus 250 ~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 329 (475)
+|||.+++|+.+++|+.+|.. +++++++|+|||+||. .++||+++++|+.+++ |
T Consensus 380 ~ydp~~~~W~~~~~m~~~r~~---------------~~~~~~~~~IYv~GG~----------~e~ydp~~~~W~~~~~-m 433 (480)
T PHA02790 380 YLLPNHDQWQFGPSTYYPHYK---------------SCALVFGRRLFLVGRN----------AEFYCESSNTWTLIDD-P 433 (480)
T ss_pred EEeCCCCEEEeCCCCCCcccc---------------ceEEEECCEEEEECCc----------eEEecCCCCcEeEcCC-C
Confidence 999999999999999999998 8889999999999983 3899999999999986 5
Q ss_pred CCCCCCccCCCeEEEEECCeEEEEcCCCCC-CCCeEEEEeCCCCcEEEcC
Q 011881 330 GEGWPARQAGTKLSVVLDGELYAFDPSSSL-NSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 330 ~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~ 378 (475)
+. ++.+++ +++++|+||++||.+.. ..+.+++||+++++|+...
T Consensus 434 ~~----~r~~~~-~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 434 IY----PRDNPE-LIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred CC----CccccE-EEEECCEEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence 32 444444 78999999999997532 2468999999999998753
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2.4e-32 Score=267.19 Aligned_cols=214 Identities=16% Similarity=0.226 Sum_probs=166.1
Q ss_pred ccceeEEEeCCEEEEEcCCCCCC----------CcceEEEEe-CC-CCcEEeCCCCCCccceeeeEEECCEEEEEeceec
Q 011881 170 FCGCAIGAVDGCLYVLGGFSRTS----------AMRCVRRYD-PI-ANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSR 237 (475)
Q Consensus 170 r~~~~~~~~~~~lyv~GG~~~~~----------~~~~~~~yd-~~-t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~ 237 (475)
+.++.++++++.|||+||.+... ..+++++|+ +. +.+|..+++||.+|..+++++++++||++||.+.
T Consensus 4 ~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~ 83 (323)
T TIGR03548 4 VAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNS 83 (323)
T ss_pred eeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCC
Confidence 56788889999999999986431 346788885 33 2379999999999998888999999999999742
Q ss_pred CCCCcccCCeEEEEeCCCCCe----EecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceE
Q 011881 238 ARGGLTPLQSAEVFDPTTDAW----SEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGE 313 (475)
Q Consensus 238 ~~~~~~~~~~~~~yd~~t~~W----~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 313 (475)
...++++++||+.+++| +.+++||.+|.. +++++++++|||+||.......++ .+
T Consensus 84 ----~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~---------------~~~~~~~~~iYv~GG~~~~~~~~~--v~ 142 (323)
T TIGR03548 84 ----SERFSSVYRITLDESKEELICETIGNLPFTFEN---------------GSACYKDGTLYVGGGNRNGKPSNK--SY 142 (323)
T ss_pred ----CCCceeEEEEEEcCCceeeeeeEcCCCCcCccC---------------ceEEEECCEEEEEeCcCCCccCce--EE
Confidence 23578999999999998 788999999988 889999999999999754444433 49
Q ss_pred EEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCe
Q 011881 314 IYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPY 393 (475)
Q Consensus 314 ~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~ 393 (475)
+||+.+++|+++++ ++. .++..+ ++++++++|||+||.+.....++++||+++++|+.+.. ++....|..+..+
T Consensus 143 ~yd~~~~~W~~~~~-~p~---~~r~~~-~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~p~~~~~~ 216 (323)
T TIGR03548 143 LFNLETQEWFELPD-FPG---EPRVQP-VCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVAD-PTTDSEPISLLGA 216 (323)
T ss_pred EEcCCCCCeeECCC-CCC---CCCCcc-eEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCC-CCCCCCceeccce
Confidence 99999999999876 421 133333 36789999999999865444678999999999999853 3322334444344
Q ss_pred E-EEEeCCeEEEEeecCC
Q 011881 394 L-LSAFHGKLHVLTKDAS 410 (475)
Q Consensus 394 ~-~~~~~~~l~v~GG~~~ 410 (475)
+ ++..+++|||+||...
T Consensus 217 ~~~~~~~~~iyv~GG~~~ 234 (323)
T TIGR03548 217 ASIKINESLLLCIGGFNK 234 (323)
T ss_pred eEEEECCCEEEEECCcCH
Confidence 4 4455799999999764
No 18
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=7.7e-33 Score=244.30 Aligned_cols=269 Identities=17% Similarity=0.245 Sum_probs=207.7
Q ss_pred CCccEEEEEEeecCC-------ceeeEEecCCCCceeeCCCCCCCcchhhhcccccccceeeccceeeeeEeeecccCCC
Q 011881 91 TTEEWLYILTKVSDD-------RLLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWND 163 (475)
Q Consensus 91 ~~~~~lyv~gg~~~~-------~~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (475)
..+..||-|||.... ..++++++..+-+|.++|+--.... .+...
T Consensus 21 aVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~----------------------------i~~~y 72 (392)
T KOG4693|consen 21 AVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKAT----------------------------IESPY 72 (392)
T ss_pred eecceEEecCCcccccccccCCcceeEEeeccceeEEecCccccccc----------------------------ccCCC
Confidence 457899999997432 2389999999999999987322100 00011
Q ss_pred CCCCCCccceeEEEeCCEEEEEcCCCC-CCCcceEEEEeCCCCcEEeC---CCCCCccceeeeEEECCEEEEEeceecCC
Q 011881 164 TLPQMPFCGCAIGAVDGCLYVLGGFSR-TSAMRCVRRYDPIANTWNEA---TSMSVGRAYCKTGILNDKLYVVGGVSRAR 239 (475)
Q Consensus 164 ~~~p~pr~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~yd~~t~~W~~~---~~~p~~R~~~~~~~~~~~iyv~GG~~~~~ 239 (475)
.+-|-.|++|+++.+.+++|+.||.+. ...-|-++.|||.+++|.+. .-+|.+|.+|+++++++.+|+|||+.+..
T Consensus 73 p~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a 152 (392)
T KOG4693|consen 73 PAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDA 152 (392)
T ss_pred CccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHH
Confidence 223445999999999999999999987 45678899999999999875 45789999999999999999999986533
Q ss_pred CCcccCCeEEEEeCCCCCeEecCCC---CccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCcee-------c
Q 011881 240 GGLTPLQSAEVFDPTTDAWSEVPSM---PFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFV-------D 309 (475)
Q Consensus 240 ~~~~~~~~~~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-------~ 309 (475)
....++++++|..|.+|+.+... |.-|.- |+++++++.+|||||+....... .
T Consensus 153 --~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDF---------------H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc 215 (392)
T KOG4693|consen 153 --QRFSQDTHVLDFATMTWREMHTKGDPPRWRDF---------------HTASVIDGMMYIFGGRSDESGPFHSIHEQYC 215 (392)
T ss_pred --HhhhccceeEeccceeeeehhccCCCchhhhh---------------hhhhhccceEEEeccccccCCCccchhhhhc
Confidence 34578999999999999998543 333444 88899999999999975432111 1
Q ss_pred cceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCC---CCCeEEEEeCCCCcEEEcCCcCccccC
Q 011881 310 VGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSL---NSAKIKVYDQKEDTWKVVIGKVPIRDF 386 (475)
Q Consensus 310 ~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~---~~~~v~~yd~~~~~W~~v~~~~p~~~~ 386 (475)
.....+|.+|+.|...++.. ..|..|..|+ +.+++++||+|||.++. ..+++|+|||.+..|..|.. .+..
T Consensus 216 ~~i~~ld~~T~aW~r~p~~~--~~P~GRRSHS-~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~---~Gk~ 289 (392)
T KOG4693|consen 216 DTIMALDLATGAWTRTPENT--MKPGGRRSHS-TFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV---RGKY 289 (392)
T ss_pred ceeEEEeccccccccCCCCC--cCCCcccccc-eEEEcceEEEecccchhhhhhhcceeecccccchheeeec---cCCC
Confidence 11257899999999875422 2356666665 78999999999998653 23799999999999999853 4567
Q ss_pred CCCCCCeEEEEeCCeEEEEeecCC
Q 011881 387 ADSESPYLLSAFHGKLHVLTKDAS 410 (475)
Q Consensus 387 ~~~r~~~~~~~~~~~l~v~GG~~~ 410 (475)
|.+|..+.+++.++|+|+|||...
T Consensus 290 P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 290 PSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred CCcccceeEEEECCEEEEecCCCC
Confidence 889999999999999999999654
No 19
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=7.2e-32 Score=266.63 Aligned_cols=259 Identities=18% Similarity=0.225 Sum_probs=177.5
Q ss_pred CccceeEEEeCCEEEEEcCCCCCCCcceEEEEeC--CCCcEEeCCCCC-CccceeeeEEECCEEEEEeceecCC--CCcc
Q 011881 169 PFCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDP--IANTWNEATSMS-VGRAYCKTGILNDKLYVVGGVSRAR--GGLT 243 (475)
Q Consensus 169 pr~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~--~t~~W~~~~~~p-~~R~~~~~~~~~~~iyv~GG~~~~~--~~~~ 243 (475)
||..+++++++++|||+||... +++++||+ .+++|+.+++|| .+|..+++++++++|||+||..... ....
T Consensus 7 ~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~ 82 (346)
T TIGR03547 7 GFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQ 82 (346)
T ss_pred cccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcce
Confidence 4776778889999999999743 67899996 678999999999 5899999999999999999975321 1122
Q ss_pred cCCeEEEEeCCCCCeEecC-CCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCc---e-----------
Q 011881 244 PLQSAEVFDPTTDAWSEVP-SMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPF---F----------- 307 (475)
Q Consensus 244 ~~~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~---~----------- 307 (475)
.++++++||+.+++|++++ ++|.+|.+ ++++ +++++||++||.+.... +
T Consensus 83 ~~~~v~~Yd~~~~~W~~~~~~~p~~~~~---------------~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 147 (346)
T TIGR03547 83 VFDDVYRYDPKKNSWQKLDTRSPVGLLG---------------ASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSE 147 (346)
T ss_pred ecccEEEEECCCCEEecCCCCCCCcccc---------------eeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccch
Confidence 5689999999999999997 45555555 5555 78999999999763210 0
Q ss_pred ------------------eccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCC--CCeEEEE
Q 011881 308 ------------------VDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLN--SAKIKVY 367 (475)
Q Consensus 308 ------------------~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~--~~~v~~y 367 (475)
....+++||+.+++|+.+++ ++. .++.+++ +++++++|||+||..... ...++.|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~-~p~---~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~y 222 (346)
T TIGR03547 148 PKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE-NPF---LGTAGSA-IVHKGNKLLLINGEIKPGLRTAEVKQY 222 (346)
T ss_pred hhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc-CCC---CcCCCce-EEEECCEEEEEeeeeCCCccchheEEE
Confidence 01235999999999999976 431 1344443 778999999999974322 2356666
Q ss_pred e--CCCCcEEEcCCcCcccc--CCCCCCCeEEEEeCCeEEEEeecCCCCee--EEEecCCCCCCCCccccccCCcccccc
Q 011881 368 D--QKEDTWKVVIGKVPIRD--FADSESPYLLSAFHGKLHVLTKDASRNIS--ILRADPRDHLGSTSSSSVSLSADSLHE 441 (475)
Q Consensus 368 d--~~~~~W~~v~~~~p~~~--~~~~r~~~~~~~~~~~l~v~GG~~~~~~~--v~~~d~~~~~~~~~~~~~~~~~~~~~~ 441 (475)
| +++++|+.+. .+|.+. .+..+..+.+++++|+|||+||.....-. ..........+. .....+|
T Consensus 223 ~~~~~~~~W~~~~-~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~--------~~~~~~e 293 (346)
T TIGR03547 223 LFTGGKLEWNKLP-PLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGL--------IKAWSSE 293 (346)
T ss_pred EecCCCceeeecC-CCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCC--------CceeEee
Confidence 5 5778999985 444322 12233456678899999999997532100 000000000000 0001133
Q ss_pred cccccccccceeeeeeecccCCC
Q 011881 442 HSDSLAESDTVVWKAIATRNFGS 464 (475)
Q Consensus 442 ~~~~~~d~~~~~W~~~~~~~~~~ 464 (475)
.||+++++|+.+++++..+
T Consensus 294 ----~yd~~~~~W~~~~~lp~~~ 312 (346)
T TIGR03547 294 ----VYALDNGKWSKVGKLPQGL 312 (346)
T ss_pred ----EEEecCCcccccCCCCCCc
Confidence 6899999999999865543
No 20
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=1.1e-29 Score=253.00 Aligned_cols=258 Identities=17% Similarity=0.251 Sum_probs=172.1
Q ss_pred ccceeEEEeCCEEEEEcCCCCCCCcceEEEEeCC--CCcEEeCCCCC-CccceeeeEEECCEEEEEeceecCC-CC-ccc
Q 011881 170 FCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPI--ANTWNEATSMS-VGRAYCKTGILNDKLYVVGGVSRAR-GG-LTP 244 (475)
Q Consensus 170 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~--t~~W~~~~~~p-~~R~~~~~~~~~~~iyv~GG~~~~~-~~-~~~ 244 (475)
+..+++++++++|||+||... +.+++||+. +++|..+++|| .+|.++++++++++|||+||..... .+ ...
T Consensus 29 ~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~ 104 (376)
T PRK14131 29 FKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQV 104 (376)
T ss_pred ccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeE
Confidence 556678889999999999643 458899986 47899999998 5899999999999999999975311 11 234
Q ss_pred CCeEEEEeCCCCCeEecCC-CCccccCCCCccccccccccceeeEEE-eCCEEEEeccCCCCC---c-------------
Q 011881 245 LQSAEVFDPTTDAWSEVPS-MPFSRAQGLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWP---F------------- 306 (475)
Q Consensus 245 ~~~~~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~---~------------- 306 (475)
++++++||+.+++|+.+++ +|.++.+ |++++ .+++||++||..... .
T Consensus 105 ~~~v~~YD~~~n~W~~~~~~~p~~~~~---------------~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~ 169 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLDTRSPVGLAG---------------HVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTP 169 (376)
T ss_pred cccEEEEeCCCCEEEeCCCCCCCcccc---------------eEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhh
Confidence 6899999999999999985 3555555 66665 899999999975310 0
Q ss_pred ----------------eeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCC--CCCeEE--E
Q 011881 307 ----------------FVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSL--NSAKIK--V 366 (475)
Q Consensus 307 ----------------~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~--~~~~v~--~ 366 (475)
......++||+.+++|+.+++ ++. .++.+++ +++++++|||+||.... ....++ .
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~-~p~---~~~~~~a-~v~~~~~iYv~GG~~~~~~~~~~~~~~~ 244 (376)
T PRK14131 170 KDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE-SPF---LGTAGSA-VVIKGNKLWLINGEIKPGLRTDAVKQGK 244 (376)
T ss_pred hhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc-CCC---CCCCcce-EEEECCEEEEEeeeECCCcCChhheEEE
Confidence 001235999999999999876 421 1344443 77889999999996432 223343 5
Q ss_pred EeCCCCcEEEcCCcCccccC---CCCCCCeEEEEeCCeEEEEeecCCCCe--eEEEecCCCCCCCCccccccCCcccccc
Q 011881 367 YDQKEDTWKVVIGKVPIRDF---ADSESPYLLSAFHGKLHVLTKDASRNI--SILRADPRDHLGSTSSSSVSLSADSLHE 441 (475)
Q Consensus 367 yd~~~~~W~~v~~~~p~~~~---~~~r~~~~~~~~~~~l~v~GG~~~~~~--~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 441 (475)
||+++++|+.+. .+|.+.. +..+..+.+++++++|||+||.....- ...........+.. .....|
T Consensus 245 ~~~~~~~W~~~~-~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~--------~~~~~e 315 (376)
T PRK14131 245 FTGNNLKWQKLP-DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLK--------KSWSDE 315 (376)
T ss_pred ecCCCcceeecC-CCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCc--------ceeehh
Confidence 578899999985 3443211 111223335678999999999754210 00000000000000 000123
Q ss_pred cccccccccceeeeeeecccCCC
Q 011881 442 HSDSLAESDTVVWKAIATRNFGS 464 (475)
Q Consensus 442 ~~~~~~d~~~~~W~~~~~~~~~~ 464 (475)
.||+++++|+.++.++..+
T Consensus 316 ----~yd~~~~~W~~~~~lp~~r 334 (376)
T PRK14131 316 ----IYALVNGKWQKVGELPQGL 334 (376)
T ss_pred ----eEEecCCcccccCcCCCCc
Confidence 6899999999998854433
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.96 E-value=5.3e-27 Score=239.06 Aligned_cols=244 Identities=20% Similarity=0.306 Sum_probs=200.5
Q ss_pred CCCCCccceeEEEeCCEEEEEcCCCCCCCcc--eEEEEeCCCCcEEeCC---CCCCccceeeeEEECCEEEEEeceecCC
Q 011881 165 LPQMPFCGCAIGAVDGCLYVLGGFSRTSAMR--CVRRYDPIANTWNEAT---SMSVGRAYCKTGILNDKLYVVGGVSRAR 239 (475)
Q Consensus 165 ~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~--~~~~yd~~t~~W~~~~---~~p~~R~~~~~~~~~~~iyv~GG~~~~~ 239 (475)
..|.+|..|+++.+++++|||||........ +++++|..+..|.... ..|.+|.+|.++.++++||+|||...
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~-- 133 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK-- 133 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC--
Confidence 4677899999999999999999987654444 4999999999998863 56789999999999999999999864
Q ss_pred CCcccCCeEEEEeCCCCCeEecC---CCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCC-ceeccceEEE
Q 011881 240 GGLTPLQSAEVFDPTTDAWSEVP---SMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWP-FFVDVGGEIY 315 (475)
Q Consensus 240 ~~~~~~~~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~y 315 (475)
....+++++.||+.|.+|+.+. ..|.+|.+ |++++++++||||||.+... ..+|+ ++|
T Consensus 134 -~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~---------------Hs~~~~g~~l~vfGG~~~~~~~~ndl--~i~ 195 (482)
T KOG0379|consen 134 -KYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAG---------------HSATVVGTKLVVFGGIGGTGDSLNDL--HIY 195 (482)
T ss_pred -CCCChhheEeccCCCCcEEEecCcCCCCCCccc---------------ceEEEECCEEEEECCccCcccceeee--eee
Confidence 2234789999999999999874 46888998 99999999999999988776 55555 999
Q ss_pred eCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCC--CCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCe
Q 011881 316 DPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSS--SLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPY 393 (475)
Q Consensus 316 d~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~--~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~ 393 (475)
|+++.+|.++..... .|.+|.+|+ +++++++++++||.. ....++++.+|+.+.+|.++. +.+..|.+|..|
T Consensus 196 d~~~~~W~~~~~~g~--~P~pR~gH~-~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~---~~g~~p~~R~~h 269 (482)
T KOG0379|consen 196 DLETSTWSELDTQGE--APSPRYGHA-MVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP---TGGDLPSPRSGH 269 (482)
T ss_pred ccccccceecccCCC--CCCCCCCce-EEEECCeEEEEeccccCCceecceEeeecccceeeecc---ccCCCCCCccee
Confidence 999999999986433 366788877 789999999998865 224589999999999999654 345688999999
Q ss_pred EEEEeCCeEEEEeecCCCCeeEEEecCCCCCCCCccccccCCcccccccccccccccceeeeeeec
Q 011881 394 LLSAFHGKLHVLTKDASRNISILRADPRDHLGSTSSSSVSLSADSLHEHSDSLAESDTVVWKAIAT 459 (475)
Q Consensus 394 ~~~~~~~~l~v~GG~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 459 (475)
.++..+.+++|+||...... . .-...|.||..+..|..+..
T Consensus 270 ~~~~~~~~~~l~gG~~~~~~----------~---------------~l~~~~~l~~~~~~w~~~~~ 310 (482)
T KOG0379|consen 270 SLTVSGDHLLLFGGGTDPKQ----------E---------------PLGDLYGLDLETLVWSKVES 310 (482)
T ss_pred eeEEECCEEEEEcCCccccc----------c---------------cccccccccccccceeeeec
Confidence 99999999999999877520 0 11123567888999998876
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.95 E-value=2e-27 Score=221.86 Aligned_cols=254 Identities=17% Similarity=0.237 Sum_probs=198.7
Q ss_pred CCCCCccceeEEEe--CCEEEEEcCC--CCC--CCcceEEEEeCCCCcEEeC--CCCCCccceeeeEEEC-CEEEEEece
Q 011881 165 LPQMPFCGCAIGAV--DGCLYVLGGF--SRT--SAMRCVRRYDPIANTWNEA--TSMSVGRAYCKTGILN-DKLYVVGGV 235 (475)
Q Consensus 165 ~~p~pr~~~~~~~~--~~~lyv~GG~--~~~--~~~~~~~~yd~~t~~W~~~--~~~p~~R~~~~~~~~~-~~iyv~GG~ 235 (475)
.+|.||.++++.+. .+.|++|||. ++. -..++++.||..+++|+.+ |+.|.||+.|.++++- +.+|+|||.
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGE 141 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGE 141 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccc
Confidence 36789999988875 5689999995 332 3478999999999999987 6778999999999884 899999998
Q ss_pred ecCCCCc--ccCCeEEEEeCCCCCeEec--CCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCC----ce
Q 011881 236 SRARGGL--TPLQSAEVFDPTTDAWSEV--PSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWP----FF 307 (475)
Q Consensus 236 ~~~~~~~--~~~~~~~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~----~~ 307 (475)
-...++. .-..++|.||..+++|+++ +.-|.+|++ |-+++...+|++|||+...+ ++
T Consensus 142 faSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSG---------------HRMvawK~~lilFGGFhd~nr~y~Yy 206 (521)
T KOG1230|consen 142 FASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSG---------------HRMVAWKRQLILFGGFHDSNRDYIYY 206 (521)
T ss_pred cCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCcc---------------ceeEEeeeeEEEEcceecCCCceEEe
Confidence 6544432 3457999999999999998 457889999 99999999999999986543 44
Q ss_pred eccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCC----------CCCeEEEEeCCC-----C
Q 011881 308 VDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSL----------NSAKIKVYDQKE-----D 372 (475)
Q Consensus 308 ~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~----------~~~~v~~yd~~~-----~ 372 (475)
+|+ ++||+.+-+|+++.+ ... +|.+|.|+..++.-+|.|||+||+... ..+++|.+++++ -
T Consensus 207 NDv--y~FdLdtykW~Klep-sga-~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw 282 (521)
T KOG1230|consen 207 NDV--YAFDLDTYKWSKLEP-SGA-GPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKW 282 (521)
T ss_pred eee--EEEeccceeeeeccC-CCC-CCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcce
Confidence 444 999999999999987 333 789999988555569999999997432 125899999988 4
Q ss_pred cEEEcCCcCccccCCCCCCCeEEEEe-CCeEEEEeecCCCCeeEEEecCCCCCCCCccccccCCcccccccccccccccc
Q 011881 373 TWKVVIGKVPIRDFADSESPYLLSAF-HGKLHVLTKDASRNISILRADPRDHLGSTSSSSVSLSADSLHEHSDSLAESDT 451 (475)
Q Consensus 373 ~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~GG~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 451 (475)
.|.++. |.+.-|.+|.++++++. +++-+.|||... +.-..+++. +..-++...||.+.
T Consensus 283 ~W~kvk---p~g~kPspRsgfsv~va~n~kal~FGGV~D---------~eeeeEsl~---------g~F~NDLy~fdlt~ 341 (521)
T KOG1230|consen 283 VWTKVK---PSGVKPSPRSGFSVAVAKNHKALFFGGVCD---------LEEEEESLS---------GEFFNDLYFFDLTR 341 (521)
T ss_pred eEeecc---CCCCCCCCCCceeEEEecCCceEEecceec---------ccccchhhh---------hhhhhhhhheeccc
Confidence 688875 34456889999998876 669999999543 222222222 44556667899999
Q ss_pred eeeeeee
Q 011881 452 VVWKAIA 458 (475)
Q Consensus 452 ~~W~~~~ 458 (475)
|+|....
T Consensus 342 nrW~~~q 348 (521)
T KOG1230|consen 342 NRWSEGQ 348 (521)
T ss_pred chhhHhh
Confidence 9998764
No 23
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=6.8e-27 Score=223.14 Aligned_cols=323 Identities=12% Similarity=0.166 Sum_probs=229.6
Q ss_pred hhhhhcC-ChhhHHhhhccCC--CccEEEEEEeecCCce-eeEEecCCCCceeeCCCCCCCcchhhhcccccccceeecc
Q 011881 72 KWKATVT-SPELFEVRKELGT--TEEWLYILTKVSDDRL-LWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGS 147 (475)
Q Consensus 72 ~W~~l~~-s~~~~~~r~~~~~--~~~~lyv~gg~~~~~~-~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (475)
+||.+.. +...++.|+.|.. ..+.|.+|||.+..-. ++++|+..++.|..-+.-..
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGD-------------------- 77 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGD-------------------- 77 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCC--------------------
Confidence 7888765 3566777777654 3678899998765533 78999999999975332111
Q ss_pred ceeeeeEeeecccCCCCCCCCCccceeEEEeCCEEEEEcCCCC-CCCcceEEEEeCCCCcEEeCC-------CCCCccce
Q 011881 148 GIKIAEVVRGWLGWNDTLPQMPFCGCAIGAVDGCLYVLGGFSR-TSAMRCVRRYDPIANTWNEAT-------SMSVGRAY 219 (475)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~-------~~p~~R~~ 219 (475)
-|.+-..|.++..+.+||+|||+.+ ..+.|++|.+......|+++. ++|.||.+
T Consensus 78 ------------------iPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlG 139 (830)
T KOG4152|consen 78 ------------------IPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLG 139 (830)
T ss_pred ------------------CCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccC
Confidence 1233567888889999999999864 577889888888888898873 47889999
Q ss_pred eeeEEECCEEEEEeceecCCC-----CcccCCeEEEEeCCCC----CeEec---CCCCccccCCCCccccccccccceee
Q 011881 220 CKTGILNDKLYVVGGVSRARG-----GLTPLQSAEVFDPTTD----AWSEV---PSMPFSRAQGLPNAFFADMLKPIATG 287 (475)
Q Consensus 220 ~~~~~~~~~iyv~GG~~~~~~-----~~~~~~~~~~yd~~t~----~W~~~---~~~p~~r~~~~~~~~~~~~~~~~~~~ 287 (475)
|+..++++|.|+|||...+.+ --.+++++++.++.-+ .|... ..+|.+|.. |.
T Consensus 140 HSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRES---------------HT 204 (830)
T KOG4152|consen 140 HSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRES---------------HT 204 (830)
T ss_pred ceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCccc---------------ce
Confidence 999999999999999753321 1246899999988755 38864 568889988 88
Q ss_pred EEEe------CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCC---
Q 011881 288 MTSY------MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSS--- 358 (475)
Q Consensus 288 ~~~~------~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~--- 358 (475)
++++ ..++||+||..+- ++.|. +..|+++.+|.+....... |.+|.-|+ +.++++++|||||.-.
T Consensus 205 AViY~eKDs~~skmvvyGGM~G~-RLgDL--W~Ldl~Tl~W~kp~~~G~~--PlPRSLHs-a~~IGnKMyvfGGWVPl~~ 278 (830)
T KOG4152|consen 205 AVIYTEKDSKKSKMVVYGGMSGC-RLGDL--WTLDLDTLTWNKPSLSGVA--PLPRSLHS-ATTIGNKMYVFGGWVPLVM 278 (830)
T ss_pred eEEEEeccCCcceEEEEcccccc-cccce--eEEecceeecccccccCCC--CCCccccc-ceeecceeEEecceeeeec
Confidence 8877 4579999997653 23333 8899999999997754333 44444444 7899999999999511
Q ss_pred ------------CCCCeEEEEeCCCCcEEEcCCcC-ccccCCCCCCCeEEEEeCCeEEEEeecCCCCee----EEEecCC
Q 011881 359 ------------LNSAKIKVYDQKEDTWKVVIGKV-PIRDFADSESPYLLSAFHGKLHVLTKDASRNIS----ILRADPR 421 (475)
Q Consensus 359 ------------~~~~~v~~yd~~~~~W~~v~~~~-p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~----v~~~d~~ 421 (475)
...+.+-++++++..|..+.... .....|.+|.+|.+++++.+|||..|.++.+.. |.|-|+.
T Consensus 279 ~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlW 358 (830)
T KOG4152|consen 279 DDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLW 358 (830)
T ss_pred cccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhh
Confidence 01257888999999999875422 222368899999999999999999998765432 6666654
Q ss_pred CCCCCCccccccCCcccccccccccccccceeeeeeec
Q 011881 422 DHLGSTSSSSVSLSADSLHEHSDSLAESDTVVWKAIAT 459 (475)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 459 (475)
--... .|-+...++....-+|.-.-.|-+++.
T Consensus 359 yLdTe------kPp~P~~VQL~rA~tNSlevsW~~V~t 390 (830)
T KOG4152|consen 359 YLDTE------KPPPPARVQLVRANTNSLEVSWGAVAT 390 (830)
T ss_pred hhccc------CCCCCceEEEEecccceeEEechhhcc
Confidence 21111 123333344333334555566776654
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.95 E-value=5.7e-26 Score=231.50 Aligned_cols=257 Identities=20% Similarity=0.244 Sum_probs=205.4
Q ss_pred ChhhHHhhhccCC--CccEEEEEEeecCCce----eeEEecCCCCceeeCCCCCCCcchhhhcccccccceeeccceeee
Q 011881 79 SPELFEVRKELGT--TEEWLYILTKVSDDRL----LWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIA 152 (475)
Q Consensus 79 s~~~~~~r~~~~~--~~~~lyv~gg~~~~~~----~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (475)
....+..|..+.. .++.+|||||...... ++++||..+..|........
T Consensus 54 ~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~------------------------- 108 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGD------------------------- 108 (482)
T ss_pred CCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCC-------------------------
Confidence 3445656655544 3889999999754322 59999999999987654433
Q ss_pred eEeeecccCCCCCCCCCccceeEEEeCCEEEEEcCCCC-CCCcceEEEEeCCCCcEEeCC---CCCCccceeeeEEECCE
Q 011881 153 EVVRGWLGWNDTLPQMPFCGCAIGAVDGCLYVLGGFSR-TSAMRCVRRYDPIANTWNEAT---SMSVGRAYCKTGILNDK 228 (475)
Q Consensus 153 ~~~~~~~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~---~~p~~R~~~~~~~~~~~ 228 (475)
.|.||.+|++++++++||+|||.+. ....++++.||+.|++|+.+. .+|.+|.+|++++++++
T Consensus 109 -------------~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~ 175 (482)
T KOG0379|consen 109 -------------EPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTK 175 (482)
T ss_pred -------------CCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCE
Confidence 3567999999999999999999984 566889999999999999874 56889999999999999
Q ss_pred EEEEeceecCCCCcccCCeEEEEeCCCCCeEec---CCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCC-CC
Q 011881 229 LYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEV---PSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLY-SW 304 (475)
Q Consensus 229 iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~-~~ 304 (475)
||||||.+...+ .++++++||+++.+|.++ .+.|.||.+ |++++++++++|+||.+ +.
T Consensus 176 l~vfGG~~~~~~---~~ndl~i~d~~~~~W~~~~~~g~~P~pR~g---------------H~~~~~~~~~~v~gG~~~~~ 237 (482)
T KOG0379|consen 176 LVVFGGIGGTGD---SLNDLHIYDLETSTWSELDTQGEAPSPRYG---------------HAMVVVGNKLLVFGGGDDGD 237 (482)
T ss_pred EEEECCccCccc---ceeeeeeeccccccceecccCCCCCCCCCC---------------ceEEEECCeEEEEeccccCC
Confidence 999999864432 689999999999999987 456889998 99999999999999988 56
Q ss_pred CceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCC---CCCeEEEEeCCCCcEEEcCCcC
Q 011881 305 PFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSL---NSAKIKVYDQKEDTWKVVIGKV 381 (475)
Q Consensus 305 ~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~---~~~~v~~yd~~~~~W~~v~~~~ 381 (475)
..++|+ +.+|+.+.+|.++.. ...+|.++++|. .++.+.+++++||.... ...+++.||.++..|.++....
T Consensus 238 ~~l~D~--~~ldl~~~~W~~~~~--~g~~p~~R~~h~-~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 238 VYLNDV--HILDLSTWEWKLLPT--GGDLPSPRSGHS-LTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred ceecce--Eeeecccceeeeccc--cCCCCCCcceee-eEEECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 666666 999999999997664 334578888887 45899999999997652 4579999999999999985422
Q ss_pred ccccCCCCCCCeEEEEe
Q 011881 382 PIRDFADSESPYLLSAF 398 (475)
Q Consensus 382 p~~~~~~~r~~~~~~~~ 398 (475)
...+.+|..++.+..
T Consensus 313 --~~~~~~~~~~~~~~~ 327 (482)
T KOG0379|consen 313 --VVRPSPRLGHAAELI 327 (482)
T ss_pred --cccccccccccceee
Confidence 134556666655544
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.93 E-value=3.7e-25 Score=206.82 Aligned_cols=227 Identities=15% Similarity=0.203 Sum_probs=180.1
Q ss_pred ccEEEEEEeecCCc------eeeEEecCCCCceeeCCCCCCCcchhhhcccccccceeeccceeeeeEeeecccCCCCCC
Q 011881 93 EEWLYILTKVSDDR------LLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWNDTLP 166 (475)
Q Consensus 93 ~~~lyv~gg~~~~~------~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (475)
.+-|++|||.--+. ++++.||..++.|..+.... +
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn---------------------------------------~ 118 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPN---------------------------------------A 118 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEeccccceeEeccCC---------------------------------------C
Confidence 34889999863332 27889999999999875332 4
Q ss_pred CCCccceeEEEeC-CEEEEEcCCCCC------CCcceEEEEeCCCCcEEeC--CCCCCccceeeeEEECCEEEEEeceec
Q 011881 167 QMPFCGCAIGAVD-GCLYVLGGFSRT------SAMRCVRRYDPIANTWNEA--TSMSVGRAYCKTGILNDKLYVVGGVSR 237 (475)
Q Consensus 167 p~pr~~~~~~~~~-~~lyv~GG~~~~------~~~~~~~~yd~~t~~W~~~--~~~p~~R~~~~~~~~~~~iyv~GG~~~ 237 (475)
|+||+.|.++++- |.+|+|||.-.. -...++|.||+.+++|+++ +.-|.||++|-+++...+|++|||...
T Consensus 119 P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd 198 (521)
T KOG1230|consen 119 PPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHD 198 (521)
T ss_pred cCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceec
Confidence 6789999888774 899999996321 2367999999999999998 457899999999999999999999976
Q ss_pred CCCCcccCCeEEEEeCCCCCeEecCC---CCccccCCCCccccccccccceeeEEEe-CCEEEEeccCCCC---------
Q 011881 238 ARGGLTPLQSAEVFDPTTDAWSEVPS---MPFSRAQGLPNAFFADMLKPIATGMTSY-MGRLCVPQSLYSW--------- 304 (475)
Q Consensus 238 ~~~~~~~~~~~~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~--------- 304 (475)
......+.+++++||+.|-+|+++.+ -|.||++ +.+.+. +|.|||.||+.-.
T Consensus 199 ~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSG---------------cq~~vtpqg~i~vyGGYsK~~~kK~~dKG 263 (521)
T KOG1230|consen 199 SNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSG---------------CQFSVTPQGGIVVYGGYSKQRVKKDVDKG 263 (521)
T ss_pred CCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCc---------------ceEEecCCCcEEEEcchhHhhhhhhhhcC
Confidence 65556688999999999999999854 4789998 777777 9999999998542
Q ss_pred CceeccceEEEeCCC-----CceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCC----------CCCCeEEEEeC
Q 011881 305 PFFVDVGGEIYDPDT-----NSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSS----------LNSAKIKVYDQ 369 (475)
Q Consensus 305 ~~~~~~~~~~yd~~~-----~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~----------~~~~~v~~yd~ 369 (475)
..+.|+ +..++++ -.|+++.+... .|.+|.|.+.++.-+++-|.|||.-. ...|+++.||+
T Consensus 264 ~~hsDm--f~L~p~~~~~dKw~W~kvkp~g~--kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdl 339 (521)
T KOG1230|consen 264 TRHSDM--FLLKPEDGREDKWVWTKVKPSGV--KPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDL 339 (521)
T ss_pred ceeeee--eeecCCcCCCcceeEeeccCCCC--CCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheec
Confidence 233333 7888887 56888876332 37788888866677889999999632 23479999999
Q ss_pred CCCcEEEc
Q 011881 370 KEDTWKVV 377 (475)
Q Consensus 370 ~~~~W~~v 377 (475)
..++|...
T Consensus 340 t~nrW~~~ 347 (521)
T KOG1230|consen 340 TRNRWSEG 347 (521)
T ss_pred ccchhhHh
Confidence 99999875
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=2e-23 Score=199.59 Aligned_cols=266 Identities=14% Similarity=0.140 Sum_probs=187.8
Q ss_pred CCCccceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeC---CCCCCccceeeeEEECCEEEEEeceecCCCCcc
Q 011881 167 QMPFCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEA---TSMSVGRAYCKTGILNDKLYVVGGVSRARGGLT 243 (475)
Q Consensus 167 p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~ 243 (475)
|-||.+|.++++...|.+|||-++ ...+.+.+||..+|+|..- .++|.+-..|..+..+.+||+|||..+-+ .
T Consensus 30 PrpRHGHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYG---k 105 (830)
T KOG4152|consen 30 PRPRHGHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYG---K 105 (830)
T ss_pred CCccccchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeec---c
Confidence 456889999999999999999654 4578899999999999863 57888888888888999999999986432 3
Q ss_pred cCCeEEEEeCCCCCeEecC-------CCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCC---------Cce
Q 011881 244 PLQSAEVFDPTTDAWSEVP-------SMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSW---------PFF 307 (475)
Q Consensus 244 ~~~~~~~yd~~t~~W~~~~-------~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~---------~~~ 307 (475)
+.++++......-.|+++. ..|.||.+ |+....+++.|+|||..+. .++
T Consensus 106 YsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlG---------------HSFsl~gnKcYlFGGLaNdseDpknNvPrYL 170 (830)
T KOG4152|consen 106 YSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLG---------------HSFSLVGNKCYLFGGLANDSEDPKNNVPRYL 170 (830)
T ss_pred ccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccC---------------ceeEEeccEeEEeccccccccCcccccchhh
Confidence 4566655544555677763 36778888 9999999999999997543 123
Q ss_pred eccceEEEeCCCC----ceEEcCCCCCCCCCCccCCCeEEEEE------CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEc
Q 011881 308 VDVGGEIYDPDTN----SWVEMPIGMGEGWPARQAGTKLSVVL------DGELYAFDPSSSLNSAKIKVYDQKEDTWKVV 377 (475)
Q Consensus 308 ~~~~~~~yd~~~~----~W~~~~~~~~~~~p~~~~~~~~~~~~------~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 377 (475)
+|. ++.++.-+ -|+..-.-. ..|.+|..|. ++++ ..++||+||..+...+++|.+|+++-+|.+.
T Consensus 171 nDl--Y~leL~~Gsgvv~W~ip~t~G--v~P~pRESHT-AViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp 245 (830)
T KOG4152|consen 171 NDL--YILELRPGSGVVAWDIPITYG--VLPPPRESHT-AVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKP 245 (830)
T ss_pred cce--EEEEeccCCceEEEecccccC--CCCCCcccce-eEEEEeccCCcceEEEEcccccccccceeEEecceeecccc
Confidence 333 45555433 488754312 2355666666 4444 3469999999988889999999999999986
Q ss_pred CCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCCCCCCCCccccccCCcccccccccccccccceeeeee
Q 011881 378 IGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPRDHLGSTSSSSVSLSADSLHEHSDSLAESDTVVWKAI 457 (475)
Q Consensus 378 ~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 457 (475)
.-. +..|.+|+.|+++.+++|+|||||-..-.. .......+.... .|......+|.+++.|+.|
T Consensus 246 ~~~---G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~--~~~~~~~hekEW-----------kCTssl~clNldt~~W~tl 309 (830)
T KOG4152|consen 246 SLS---GVAPLPRSLHSATTIGNKMYVFGGWVPLVM--DDVKVATHEKEW-----------KCTSSLACLNLDTMAWETL 309 (830)
T ss_pred ccc---CCCCCCcccccceeecceeEEecceeeeec--ccccccccccee-----------eeccceeeeeecchheeee
Confidence 421 334778999999999999999999644310 001112222221 1444455689999999998
Q ss_pred ec-----ccCCCcceeeeEE
Q 011881 458 AT-----RNFGSAELVSCQV 472 (475)
Q Consensus 458 ~~-----~~~~~~~~~~~~~ 472 (475)
-. .-..+.+.-||+|
T Consensus 310 ~~d~~ed~tiPR~RAGHCAv 329 (830)
T KOG4152|consen 310 LMDTLEDNTIPRARAGHCAV 329 (830)
T ss_pred eeccccccccccccccceeE
Confidence 76 2244445556665
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.78 E-value=3.8e-17 Score=151.57 Aligned_cols=256 Identities=19% Similarity=0.346 Sum_probs=176.1
Q ss_pred CccEEEEEEeecCCceeeEEecCC--CCceeeCCCCCCCcchhhhcccccccceeeccceeeeeEeeecccCCCCCCCCC
Q 011881 92 TEEWLYILTKVSDDRLLWHALDPL--SKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWNDTLPQMP 169 (475)
Q Consensus 92 ~~~~lyv~gg~~~~~~~~~~yd~~--~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p 169 (475)
.++.+||..|..+ ..++..|.. ...|++++..|.. +
T Consensus 45 ig~~~YVGLGs~G--~afy~ldL~~~~k~W~~~a~FpG~----------------------------------------~ 82 (381)
T COG3055 45 IGDTVYVGLGSAG--TAFYVLDLKKPGKGWTKIADFPGG----------------------------------------A 82 (381)
T ss_pred ecceEEEEeccCC--ccceehhhhcCCCCceEcccCCCc----------------------------------------c
Confidence 4679999777433 367777775 4679999988875 5
Q ss_pred ccceeEEEeCCEEEEEcCCCCC-----CCcceEEEEeCCCCcEEeCCC-CCCccceeeeEEECC-EEEEEeceecCC---
Q 011881 170 FCGCAIGAVDGCLYVLGGFSRT-----SAMRCVRRYDPIANTWNEATS-MSVGRAYCKTGILND-KLYVVGGVSRAR--- 239 (475)
Q Consensus 170 r~~~~~~~~~~~lyv~GG~~~~-----~~~~~~~~yd~~t~~W~~~~~-~p~~R~~~~~~~~~~-~iyv~GG~~~~~--- 239 (475)
|.....++++++||+|||.... ...+++++|||.+++|+++.. .|..-.++.++.+++ +||++||++...
T Consensus 83 rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~ 162 (381)
T COG3055 83 RNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNG 162 (381)
T ss_pred cccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhh
Confidence 8888889999999999998532 347899999999999999964 466677888888877 999999987510
Q ss_pred ---------------------------CCcccCCeEEEEeCCCCCeEecCCCCc-cccCCCCccccccccccceeeEEEe
Q 011881 240 ---------------------------GGLTPLQSAEVFDPTTDAWSEVPSMPF-SRAQGLPNAFFADMLKPIATGMTSY 291 (475)
Q Consensus 240 ---------------------------~~~~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~~~~~~~~~~~~~ 291 (475)
........+..|||.+++|+.+...|. ++++ .+++.-
T Consensus 163 yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aG---------------sa~~~~ 227 (381)
T COG3055 163 YFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAG---------------SAVVIK 227 (381)
T ss_pred hHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccC---------------cceeec
Confidence 001234678999999999999986664 4555 455556
Q ss_pred CCEEEEeccCCCCCceeccceEEEeCC--CCceEEcCCCCCCCCCCccCCCe--EEEEECCeEEEEcCCCC---------
Q 011881 292 MGRLCVPQSLYSWPFFVDVGGEIYDPD--TNSWVEMPIGMGEGWPARQAGTK--LSVVLDGELYAFDPSSS--------- 358 (475)
Q Consensus 292 ~~~iyv~GG~~~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~~~p~~~~~~~--~~~~~~~~lyv~GG~~~--------- 358 (475)
++++.++-|.--.. +.......++.. .-+|..+++ ++.+......+.+ ..-..++.+.|.||-..
T Consensus 228 ~n~~~lInGEiKpG-LRt~~~k~~~~~~~~~~w~~l~~-lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~ 305 (381)
T COG3055 228 GNKLTLINGEIKPG-LRTAEVKQADFGGDNLKWLKLSD-LPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKN 305 (381)
T ss_pred CCeEEEEcceecCC-ccccceeEEEeccCceeeeeccC-CCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHh
Confidence 67687766632211 111223455554 557998866 3321111112221 12246788888888421
Q ss_pred -----------CCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCee
Q 011881 359 -----------LNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNIS 414 (475)
Q Consensus 359 -----------~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~ 414 (475)
...++|+.+| .+.|+.+ .. +|.+......+..+++||++||+......
T Consensus 306 Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~-Ge-----Lp~~l~YG~s~~~nn~vl~IGGE~~~Gka 364 (381)
T COG3055 306 GKFYAHEGLSKSWNSEVYIFD--NGSWKIV-GE-----LPQGLAYGVSLSYNNKVLLIGGETSGGKA 364 (381)
T ss_pred cccccccchhhhhhceEEEEc--CCceeee-cc-----cCCCccceEEEecCCcEEEEccccCCCee
Confidence 1125788888 8899997 43 44556666777889999999999887654
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.64 E-value=8.1e-15 Score=136.24 Aligned_cols=263 Identities=19% Similarity=0.273 Sum_probs=166.5
Q ss_pred eEEEeCCEEEEEcCCCCCCCcceEEEEeCCC--CcEEeCCCCCC-ccceeeeEEECCEEEEEeceecCCC-CcccCCeEE
Q 011881 174 AIGAVDGCLYVLGGFSRTSAMRCVRRYDPIA--NTWNEATSMSV-GRAYCKTGILNDKLYVVGGVSRARG-GLTPLQSAE 249 (475)
Q Consensus 174 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t--~~W~~~~~~p~-~R~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~~~ 249 (475)
+-+.+++.+||-=|..+ ...+..|+.. ..|++++..|- +|.+...++++++||||||...... .....++++
T Consensus 41 ~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y 116 (381)
T COG3055 41 AGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAY 116 (381)
T ss_pred ccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeE
Confidence 45567889998655322 4677777764 57999999885 7999999999999999999865432 134578999
Q ss_pred EEeCCCCCeEecCCC-CccccCCCCccccccccccceeeEEEeCC-EEEEeccCCCC---Cceeccce------------
Q 011881 250 VFDPTTDAWSEVPSM-PFSRAQGLPNAFFADMLKPIATGMTSYMG-RLCVPQSLYSW---PFFVDVGG------------ 312 (475)
Q Consensus 250 ~yd~~t~~W~~~~~~-p~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~---~~~~~~~~------------ 312 (475)
+|||.+|+|+++... |....+ +.++.+++ +||++||.+.. ..+.|++.
T Consensus 117 ~y~p~~nsW~kl~t~sP~gl~G---------------~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~ 181 (381)
T COG3055 117 RYDPSTNSWHKLDTRSPTGLVG---------------ASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII 181 (381)
T ss_pred EecCCCChhheecccccccccc---------------ceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence 999999999998643 333333 67778877 99999997542 12222221
Q ss_pred -----------------EEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCC--CCCCCeEEEEeCC--C
Q 011881 313 -----------------EIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSS--SLNSAKIKVYDQK--E 371 (475)
Q Consensus 313 -----------------~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~--~~~~~~v~~yd~~--~ 371 (475)
..|||.+++|+.+....- ..+++.+ ++.-++++.++.|+- ......++.++.. .
T Consensus 182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf----~~~aGsa-~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~ 256 (381)
T COG3055 182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPF----YGNAGSA-VVIKGNKLTLINGEIKPGLRTAEVKQADFGGDN 256 (381)
T ss_pred HHHhCCCHHHhcccccccccccccchhhhcCcCcc----cCccCcc-eeecCCeEEEEcceecCCccccceeEEEeccCc
Confidence 479999999998874211 2344432 444577799998863 3334567777765 4
Q ss_pred CcEEEcCCcCccccC-C-CCCCCeEEEEeCCeEEEEeecCCCC--eeEEEecCCCCCCCCccccccCCcccccccccccc
Q 011881 372 DTWKVVIGKVPIRDF-A-DSESPYLLSAFHGKLHVLTKDASRN--ISILRADPRDHLGSTSSSSVSLSADSLHEHSDSLA 447 (475)
Q Consensus 372 ~~W~~v~~~~p~~~~-~-~~r~~~~~~~~~~~l~v~GG~~~~~--~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (475)
-+|..+.. +|.+.. . ..-.++-.-..++.+.|.||..-.. ......-+..+.+... .+...++.+
T Consensus 257 ~~w~~l~~-lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K----------~w~~~Vy~~ 325 (381)
T COG3055 257 LKWLKLSD-LPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSK----------SWNSEVYIF 325 (381)
T ss_pred eeeeeccC-CCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhh----------hhhceEEEE
Confidence 57999854 332211 1 2222333335678888888854332 1122222333333322 344455566
Q ss_pred cccceeeeeeecc----cCCCcceeeeEEe
Q 011881 448 ESDTVVWKAIATR----NFGSAELVSCQVL 473 (475)
Q Consensus 448 d~~~~~W~~~~~~----~~~~~~~~~~~~~ 473 (475)
| .+.|+.+... .+|.+...+..||
T Consensus 326 d--~g~Wk~~GeLp~~l~YG~s~~~nn~vl 353 (381)
T COG3055 326 D--NGSWKIVGELPQGLAYGVSLSYNNKVL 353 (381)
T ss_pred c--CCceeeecccCCCccceEEEecCCcEE
Confidence 6 8999999874 4444444444443
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.36 E-value=4.2e-13 Score=129.23 Aligned_cols=196 Identities=16% Similarity=0.118 Sum_probs=134.2
Q ss_pred CCCccceeEEEeCC--EEEEEcCCCCCCCcceEEEEeCCCCcEEeCC---CCCCccceeeeEEECC--EEEEEeceecCC
Q 011881 167 QMPFCGCAIGAVDG--CLYVLGGFSRTSAMRCVRRYDPIANTWNEAT---SMSVGRAYCKTGILND--KLYVVGGVSRAR 239 (475)
Q Consensus 167 p~pr~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~R~~~~~~~~~~--~iyv~GG~~~~~ 239 (475)
|..|.+|.++...+ .||+.||+++.+.+.++|.|+...+.|..+. ..|..|..|-++..-. |||+.|-+-...
T Consensus 258 p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS 337 (723)
T KOG2437|consen 258 PGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSS 337 (723)
T ss_pred ccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccc
Confidence 44588999997655 8999999999999999999999999999873 5788999999998755 999999774322
Q ss_pred C--CcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCE--EEEeccCCCCCceec-cceEE
Q 011881 240 G--GLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGR--LCVPQSLYSWPFFVD-VGGEI 314 (475)
Q Consensus 240 ~--~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--iyv~GG~~~~~~~~~-~~~~~ 314 (475)
. ....-.++|+||..++.|..+.. .....++.++.|- |.+++...+ |||+||+.-...-.. -|.+.
T Consensus 338 ~r~~~s~RsDfW~FDi~~~~W~~ls~-dt~~dGGP~~vfD--------HqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYa 408 (723)
T KOG2437|consen 338 VRNSKSLRSDFWRFDIDTNTWMLLSE-DTAADGGPKLVFD--------HQMCVDSEKHMIYVFGGRILTCNEPQFSGLYA 408 (723)
T ss_pred cccccccccceEEEecCCceeEEecc-cccccCCcceeec--------ceeeEecCcceEEEecCeeccCCCccccceEE
Confidence 1 12345789999999999998752 2222222222222 899999888 999999755433222 34589
Q ss_pred EeCCCCceEEcCCCCCCC-----CCCccCCCe-EEEEECCeEEEEcCCCCC-CCCeEEEEeCCC
Q 011881 315 YDPDTNSWVEMPIGMGEG-----WPARQAGTK-LSVVLDGELYAFDPSSSL-NSAKIKVYDQKE 371 (475)
Q Consensus 315 yd~~~~~W~~~~~~~~~~-----~p~~~~~~~-~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~ 371 (475)
||.....|..+....... ....|.++. -.+.-++.+|++||.... ..+-.+.||+..
T Consensus 409 f~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~ 472 (723)
T KOG2437|consen 409 FNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDS 472 (723)
T ss_pred EecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceecc
Confidence 999999999864321110 012233332 123457789999997543 223444565543
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.34 E-value=2.7e-12 Score=88.38 Aligned_cols=49 Identities=37% Similarity=0.666 Sum_probs=46.2
Q ss_pred CccceeEEEeCCEEEEEcCCCC-CCCcceEEEEeCCCCcEEeCCCCCCcc
Q 011881 169 PFCGCAIGAVDGCLYVLGGFSR-TSAMRCVRRYDPIANTWNEATSMSVGR 217 (475)
Q Consensus 169 pr~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~p~~R 217 (475)
||.+|++++++++|||+||..+ ...++++++||+.|++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 5889999999999999999987 678999999999999999999999987
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.26 E-value=1e-11 Score=85.40 Aligned_cols=50 Identities=30% Similarity=0.577 Sum_probs=44.9
Q ss_pred ccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccc
Q 011881 216 GRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSR 268 (475)
Q Consensus 216 ~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r 268 (475)
||.+|++++++++|||+||.... ...++++++||++|++|+++++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS---GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC---CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 68999999999999999998632 456899999999999999999999886
No 32
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.20 E-value=9.3e-12 Score=120.07 Aligned_cols=191 Identities=16% Similarity=0.193 Sum_probs=134.3
Q ss_pred CCCCcEEeCCC----------CCCccceeeeEEECC--EEEEEeceecCCCCcccCCeEEEEeCCCCCeEecC---CCCc
Q 011881 202 PIANTWNEATS----------MSVGRAYCKTGILND--KLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVP---SMPF 266 (475)
Q Consensus 202 ~~t~~W~~~~~----------~p~~R~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~ 266 (475)
+.+-+|.++++ -|..|.+|.++...+ .||+.||. ++.+.+.+.|.|+...+.|+.+. ..|.
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGW----dG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG 311 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGW----DGTQDLADFWAYSVKENQWTCINRDTEGPG 311 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCc----ccchhHHHHHhhcCCcceeEEeecCCCCCc
Confidence 34667888753 356799999998755 99999999 46567899999999999999873 3677
Q ss_pred cccCCCCccccccccccceeeEEEeCC--EEEEeccCCCCCceeccc----eEEEeCCCCceEEcCCCCC-CCCCCccCC
Q 011881 267 SRAQGLPNAFFADMLKPIATGMTSYMG--RLCVPQSLYSWPFFVDVG----GEIYDPDTNSWVEMPIGMG-EGWPARQAG 339 (475)
Q Consensus 267 ~r~~~~~~~~~~~~~~~~~~~~~~~~~--~iyv~GG~~~~~~~~~~~----~~~yd~~~~~W~~~~~~~~-~~~p~~~~~ 339 (475)
.|.. |-++.... ++|+.|-+-+........ .++||..+++|..+...-. .+-|.....
T Consensus 312 ~RsC---------------HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfD 376 (723)
T KOG2437|consen 312 ARSC---------------HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFD 376 (723)
T ss_pred chhh---------------hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeec
Confidence 7777 77776544 899999764432221111 2899999999998764221 244555555
Q ss_pred CeEEEEECCe--EEEEcCCCC----CCCCeEEEEeCCCCcEEEcCCc----CccccCCCCCCCeEEEE--eCCeEEEEee
Q 011881 340 TKLSVVLDGE--LYAFDPSSS----LNSAKIKVYDQKEDTWKVVIGK----VPIRDFADSESPYLLSA--FHGKLHVLTK 407 (475)
Q Consensus 340 ~~~~~~~~~~--lyv~GG~~~----~~~~~v~~yd~~~~~W~~v~~~----~p~~~~~~~r~~~~~~~--~~~~l~v~GG 407 (475)
|. +++.+.+ |||+||... .....++.||.....|..+... -|.-.....|.+|.+-. -+.++|++||
T Consensus 377 Hq-M~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fgg 455 (723)
T KOG2437|consen 377 HQ-MCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGG 455 (723)
T ss_pred ce-eeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccC
Confidence 55 7777777 999999632 2235899999999999986532 12222344566665543 4778999998
Q ss_pred cCCCC
Q 011881 408 DASRN 412 (475)
Q Consensus 408 ~~~~~ 412 (475)
-....
T Consensus 456 q~s~~ 460 (723)
T KOG2437|consen 456 QRSKT 460 (723)
T ss_pred cccce
Confidence 65543
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.07 E-value=1.4e-10 Score=78.75 Aligned_cols=46 Identities=37% Similarity=0.678 Sum_probs=42.6
Q ss_pred CccceeEEEeCCEEEEEcCCCC-CCCcceEEEEeCCCCcEEeCCCCC
Q 011881 169 PFCGCAIGAVDGCLYVLGGFSR-TSAMRCVRRYDPIANTWNEATSMS 214 (475)
Q Consensus 169 pr~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~p 214 (475)
||..|++++++++||++||.++ ...++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 5889999999999999999987 788999999999999999999986
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.04 E-value=2.7e-10 Score=77.28 Aligned_cols=47 Identities=38% Similarity=0.789 Sum_probs=41.7
Q ss_pred ccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCC
Q 011881 216 GRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMP 265 (475)
Q Consensus 216 ~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p 265 (475)
||.+|++++++++|||+||... ....++++++||+++++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~---~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG---NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES---TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecc---cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6899999999999999999974 3457899999999999999999886
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.00 E-value=8e-10 Score=75.50 Aligned_cols=47 Identities=23% Similarity=0.443 Sum_probs=43.2
Q ss_pred CCEEEEEcCCC--CCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE
Q 011881 179 DGCLYVLGGFS--RTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL 225 (475)
Q Consensus 179 ~~~lyv~GG~~--~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~ 225 (475)
+++|||+||.+ ....++++|+||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57899999998 567799999999999999999999999999999864
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.94 E-value=2.4e-09 Score=73.12 Aligned_cols=49 Identities=31% Similarity=0.509 Sum_probs=41.5
Q ss_pred ccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCC
Q 011881 216 GRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMP 265 (475)
Q Consensus 216 ~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p 265 (475)
||.+|+++++++||||+||+ ...+.....+++++||+++++|+.+++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~-~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGY-GTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCc-ccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68999999999999999999 11233456899999999999999998875
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.91 E-value=3.7e-09 Score=72.20 Aligned_cols=46 Identities=33% Similarity=0.608 Sum_probs=41.7
Q ss_pred CccceeEEEeCCEEEEEcCC---CCCCCcceEEEEeCCCCcEEeCCCCC
Q 011881 169 PFCGCAIGAVDGCLYVLGGF---SRTSAMRCVRRYDPIANTWNEATSMS 214 (475)
Q Consensus 169 pr~~~~~~~~~~~lyv~GG~---~~~~~~~~~~~yd~~t~~W~~~~~~p 214 (475)
||..|++++++++|||+||. +.....+++++||+.+++|+.+++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 58899999999999999999 45677899999999999999998875
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.87 E-value=1.9e-09 Score=73.71 Aligned_cols=47 Identities=30% Similarity=0.532 Sum_probs=31.2
Q ss_pred CccceeEEEe-CCEEEEEcCCCCC-CCcceEEEEeCCCCcEEeCCCCCC
Q 011881 169 PFCGCAIGAV-DGCLYVLGGFSRT-SAMRCVRRYDPIANTWNEATSMSV 215 (475)
Q Consensus 169 pr~~~~~~~~-~~~lyv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~p~ 215 (475)
||.+|+++.+ ++.|||+||.+.. ..++++++||+.+++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 5889999988 5899999999875 589999999999999999988873
No 39
>smart00612 Kelch Kelch domain.
Probab=98.84 E-value=5.4e-09 Score=70.68 Aligned_cols=47 Identities=32% Similarity=0.629 Sum_probs=42.6
Q ss_pred EEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECC
Q 011881 181 CLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILND 227 (475)
Q Consensus 181 ~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~ 227 (475)
+||++||.++...++++++||+.+++|+.+++|+.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998776778999999999999999999999999999988764
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.82 E-value=5.8e-09 Score=71.29 Aligned_cols=47 Identities=32% Similarity=0.639 Sum_probs=31.1
Q ss_pred ccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCC
Q 011881 216 GRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMP 265 (475)
Q Consensus 216 ~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p 265 (475)
||.+|+++.+ +++|||+||.+... ..++++++||+++++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~---~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG---SPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T---EE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC---cccCCEEEEECCCCEEEECCCCC
Confidence 6999999998 58999999997432 47899999999999999998887
No 41
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.77 E-value=1.7e-08 Score=68.91 Aligned_cols=43 Identities=37% Similarity=0.669 Sum_probs=37.8
Q ss_pred CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccC
Q 011881 226 NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQ 270 (475)
Q Consensus 226 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~ 270 (475)
+++|||+||.+. .+...++++++||+.+++|++++++|.+|..
T Consensus 1 g~~~~vfGG~~~--~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~ 43 (49)
T PF13415_consen 1 GNKLYVFGGYDD--DGGTRLNDVWVFDLDTNTWTRIGDLPPPRSG 43 (49)
T ss_pred CCEEEEECCcCC--CCCCEecCEEEEECCCCEEEECCCCCCCccc
Confidence 579999999863 2345789999999999999999999999998
No 42
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.70 E-value=5.4e-07 Score=82.74 Aligned_cols=131 Identities=23% Similarity=0.316 Sum_probs=84.6
Q ss_pred ccceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCC----CcEEeCC-CCCCccceeeeEEE-CCEEEEEeceecCCCCcc
Q 011881 170 FCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIA----NTWNEAT-SMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLT 243 (475)
Q Consensus 170 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t----~~W~~~~-~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~ 243 (475)
.|...+..-+|++.+.||... ....+-.|++.+ ..|.+.+ .|..+|.+.++..+ +|+++|+||..
T Consensus 68 FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~------- 138 (243)
T PF07250_consen 68 FCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN------- 138 (243)
T ss_pred cccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC-------
Confidence 344444456889999999754 345667788875 6798886 58999999998887 89999999974
Q ss_pred cCCeEEEEeCCCC-----CeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCC
Q 011881 244 PLQSAEVFDPTTD-----AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPD 318 (475)
Q Consensus 244 ~~~~~~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~ 318 (475)
....|.+.+... .|..+...... .....+.+....-+|+||+++. .+...||+.
T Consensus 139 -~~t~E~~P~~~~~~~~~~~~~l~~~~~~-----------~~~nlYP~~~llPdG~lFi~an---------~~s~i~d~~ 197 (243)
T PF07250_consen 139 -NPTYEFWPPKGPGPGPVTLPFLSQTSDT-----------LPNNLYPFVHLLPDGNLFIFAN---------RGSIIYDYK 197 (243)
T ss_pred -CCcccccCCccCCCCceeeecchhhhcc-----------CccccCceEEEcCCCCEEEEEc---------CCcEEEeCC
Confidence 233444444221 12222211100 0011122566777999999887 344899999
Q ss_pred CCce-EEcCCCCCC
Q 011881 319 TNSW-VEMPIGMGE 331 (475)
Q Consensus 319 ~~~W-~~~~~~~~~ 331 (475)
++++ ..++. ++.
T Consensus 198 ~n~v~~~lP~-lPg 210 (243)
T PF07250_consen 198 TNTVVRTLPD-LPG 210 (243)
T ss_pred CCeEEeeCCC-CCC
Confidence 9988 66776 444
No 43
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.67 E-value=7.9e-06 Score=75.85 Aligned_cols=212 Identities=13% Similarity=0.129 Sum_probs=115.9
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCcccee----eeEEECC-----EEEEEeceecCCCCcccCCeE
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYC----KTGILND-----KLYVVGGVSRARGGLTPLQSA 248 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~----~~~~~~~-----~iyv~GG~~~~~~~~~~~~~~ 248 (475)
.+|.|++..+ ..+.++||.|++|..+|+.+.++... ....++. ||..+..... + .....+
T Consensus 4 CnGLlc~~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~--~--~~~~~~ 72 (230)
T TIGR01640 4 CDGLICFSYG-------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG--N--RNQSEH 72 (230)
T ss_pred cceEEEEecC-------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC--C--CCCccE
Confidence 4666755432 47899999999999998755432111 1111221 5555543211 1 123578
Q ss_pred EEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEE-cCC
Q 011881 249 EVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE-MPI 327 (475)
Q Consensus 249 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~ 327 (475)
++|+..+++|+.+...+...... ...+.++|.||-+......... .....||..+++|.+ ++.
T Consensus 73 ~Vys~~~~~Wr~~~~~~~~~~~~--------------~~~v~~~G~lyw~~~~~~~~~~--~~IvsFDl~~E~f~~~i~~ 136 (230)
T TIGR01640 73 QVYTLGSNSWRTIECSPPHHPLK--------------SRGVCINGVLYYLAYTLKTNPD--YFIVSFDVSSERFKEFIPL 136 (230)
T ss_pred EEEEeCCCCccccccCCCCcccc--------------CCeEEECCEEEEEEEECCCCCc--EEEEEEEcccceEeeeeec
Confidence 99999999999987433211110 2256789999877532211110 134899999999995 654
Q ss_pred CCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEe-CCCCcEEEcCCcCccccCCCCC--CCeEEEEeCCeEEE
Q 011881 328 GMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYD-QKEDTWKVVIGKVPIRDFADSE--SPYLLSAFHGKLHV 404 (475)
Q Consensus 328 ~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd-~~~~~W~~v~~~~p~~~~~~~r--~~~~~~~~~~~l~v 404 (475)
+... . ........+.++|+|.++........-+||+.+ -..++|+++- .++....+..+ .....+..+|+|++
T Consensus 137 P~~~--~-~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~-~i~~~~~~~~~~~~~~~~~~~~g~I~~ 212 (230)
T TIGR01640 137 PCGN--S-DSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLF-TVPIPPLPDLVDDNFLSGFTDKGEIVL 212 (230)
T ss_pred Cccc--c-ccccceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEE-EEcCcchhhhhhheeEeEEeeCCEEEE
Confidence 2111 0 011122367788999888654322224777775 4466799752 22211111111 11234456788888
Q ss_pred EeecCCCCeeEEEecCC
Q 011881 405 LTKDASRNISILRADPR 421 (475)
Q Consensus 405 ~GG~~~~~~~v~~~d~~ 421 (475)
.... .....+..||+.
T Consensus 213 ~~~~-~~~~~~~~y~~~ 228 (230)
T TIGR01640 213 CCED-ENPFYIFYYNVG 228 (230)
T ss_pred EeCC-CCceEEEEEecc
Confidence 7653 222225555443
No 44
>smart00612 Kelch Kelch domain.
Probab=98.63 E-value=5.4e-08 Score=65.68 Aligned_cols=47 Identities=45% Similarity=0.832 Sum_probs=39.5
Q ss_pred EEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCC
Q 011881 228 KLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMG 293 (475)
Q Consensus 228 ~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (475)
+||++||... ....+++++||+.+++|+.+++|+.+|.. ++++++++
T Consensus 1 ~iyv~GG~~~----~~~~~~v~~yd~~~~~W~~~~~~~~~r~~---------------~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG----GQRLKSVEVYDPETNKWTPLPSMPTPRSG---------------HGVAVING 47 (47)
T ss_pred CEEEEeCCCC----CceeeeEEEECCCCCeEccCCCCCCcccc---------------ceEEEeCC
Confidence 5899999742 24578999999999999999999999998 77777654
No 45
>PLN02772 guanylate kinase
Probab=98.50 E-value=9.7e-07 Score=86.09 Aligned_cols=83 Identities=20% Similarity=0.195 Sum_probs=68.0
Q ss_pred CCCccceeEEEeCCEEEEEcCCCCCC-CcceEEEEeCCCCcEEeC---CCCCCccceeeeEEE-CCEEEEEeceecCCCC
Q 011881 167 QMPFCGCAIGAVDGCLYVLGGFSRTS-AMRCVRRYDPIANTWNEA---TSMSVGRAYCKTGIL-NDKLYVVGGVSRARGG 241 (475)
Q Consensus 167 p~pr~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~yd~~t~~W~~~---~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~ 241 (475)
.-|+..++++++++++||+||.+... ..+.+++||..|++|... ...|.||.+|+++++ +++|+|+++...
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~---- 97 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA---- 97 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC----
Confidence 34788999999999999999987654 688999999999999875 578999999999998 689999997532
Q ss_pred cccCCeEEEEeCCC
Q 011881 242 LTPLQSAEVFDPTT 255 (475)
Q Consensus 242 ~~~~~~~~~yd~~t 255 (475)
...++|.....|
T Consensus 98 --~~~~~w~l~~~t 109 (398)
T PLN02772 98 --PDDSIWFLEVDT 109 (398)
T ss_pred --CccceEEEEcCC
Confidence 235666666555
No 46
>PF13854 Kelch_5: Kelch motif
Probab=98.38 E-value=7.7e-07 Score=58.34 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=34.8
Q ss_pred CCCccceeEEEeCCEEEEEcCCC--CCCCcceEEEEeCCCC
Q 011881 167 QMPFCGCAIGAVDGCLYVLGGFS--RTSAMRCVRRYDPIAN 205 (475)
Q Consensus 167 p~pr~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~yd~~t~ 205 (475)
|.||.+|++++++++||++||.+ .....+++|+||+.++
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 67899999999999999999998 4677999999998764
No 47
>PF13854 Kelch_5: Kelch motif
Probab=98.35 E-value=1e-06 Score=57.75 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=35.3
Q ss_pred CCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 213 MSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 213 ~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
+|.+|.+|++++++++||++||... ......+++++||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~--~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG--NNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC--CCCCEECcEEEEECCCC
Confidence 5889999999999999999999863 23446899999998763
No 48
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.32 E-value=0.00029 Score=65.37 Aligned_cols=157 Identities=15% Similarity=0.192 Sum_probs=90.1
Q ss_pred cceEEEEeCCCCcEEeCCCCCCc-cceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEe-cCCCCccccCC
Q 011881 194 MRCVRRYDPIANTWNEATSMSVG-RAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSE-VPSMPFSRAQG 271 (475)
Q Consensus 194 ~~~~~~yd~~t~~W~~~~~~p~~-R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~r~~~ 271 (475)
...+++|+..+++|+.+...+.. ......+.++|.||-+.-.... .....+..||..+++|+. ++ +|..+...
T Consensus 69 ~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~----~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~ 143 (230)
T TIGR01640 69 QSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKT----NPDYFIVSFDVSSERFKEFIP-LPCGNSDS 143 (230)
T ss_pred CccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCC----CCcEEEEEEEcccceEeeeee-cCcccccc
Confidence 45789999999999998743321 1112266789999998753211 111379999999999995 43 44332210
Q ss_pred CCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEe-CCCCceEEcCCCCCC-CCCCccC-CCeEEEEECC
Q 011881 272 LPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYD-PDTNSWVEMPIGMGE-GWPARQA-GTKLSVVLDG 348 (475)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd-~~~~~W~~~~~~~~~-~~p~~~~-~~~~~~~~~~ 348 (475)
.. ....+.++|+|.++........ +..++.+ ....+|+++-. ... .++.... .....+..+|
T Consensus 144 ~~-----------~~~L~~~~G~L~~v~~~~~~~~---~~IWvl~d~~~~~W~k~~~-i~~~~~~~~~~~~~~~~~~~~g 208 (230)
T TIGR01640 144 VD-----------YLSLINYKGKLAVLKQKKDTNN---FDLWVLNDAGKQEWSKLFT-VPIPPLPDLVDDNFLSGFTDKG 208 (230)
T ss_pred cc-----------ceEEEEECCEEEEEEecCCCCc---EEEEEECCCCCCceeEEEE-EcCcchhhhhhheeEeEEeeCC
Confidence 00 0456778899988654322111 3336654 44567997432 110 1111111 1122466788
Q ss_pred eEEEEcCCCCCCCCeEEEEeCCCC
Q 011881 349 ELYAFDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 349 ~lyv~GG~~~~~~~~v~~yd~~~~ 372 (475)
+|++.... ....-+..||++++
T Consensus 209 ~I~~~~~~--~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 209 EIVLCCED--ENPFYIFYYNVGEN 230 (230)
T ss_pred EEEEEeCC--CCceEEEEEeccCC
Confidence 88887653 11124899999875
No 49
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.32 E-value=4e-07 Score=61.44 Aligned_cols=42 Identities=31% Similarity=0.574 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHhccCChhhhHHHHHhhhhhhhhcCChhhHH
Q 011881 43 IPSLPDELSIQILARVPRIFYLNLRAVSRKWKATVTSPELFE 84 (475)
Q Consensus 43 ~~~LP~dl~~~iL~~lp~~~l~~l~~vck~W~~l~~s~~~~~ 84 (475)
|..||+|++.+||.+|+..++.+++.|||+|+.++.++.+.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 568999999999999999999999999999999998775543
No 50
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.24 E-value=0.00064 Score=66.36 Aligned_cols=39 Identities=26% Similarity=0.483 Sum_probs=34.4
Q ss_pred CCCCCCCHHHHHHHhccCC-hhhhHHHHHhhhhhhhhcCC
Q 011881 41 RLIPSLPDELSIQILARVP-RIFYLNLRAVSRKWKATVTS 79 (475)
Q Consensus 41 ~~~~~LP~dl~~~iL~~lp-~~~l~~l~~vck~W~~l~~s 79 (475)
..|..||+||+..|..+|| ..++.++|+||+.||+-+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 3588999999999999996 66899999999999997654
No 51
>PLN02772 guanylate kinase
Probab=98.18 E-value=1.2e-05 Score=78.53 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=62.0
Q ss_pred EEEECCeEEEEcCCCCC--CCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEe-CCeEEEEeecCCCCeeEEEec
Q 011881 343 SVVLDGELYAFDPSSSL--NSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAF-HGKLHVLTKDASRNISILRAD 419 (475)
Q Consensus 343 ~~~~~~~lyv~GG~~~~--~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~GG~~~~~~~v~~~d 419 (475)
++++++++||+||.+.. ..+.+++||+.+++|....- .+..|.+|.+|+++++ +++|+|+++....+-+++...
T Consensus 30 av~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V---~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w~l~ 106 (398)
T PLN02772 30 SVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIV---LGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIWFLE 106 (398)
T ss_pred eEEECCEEEEEcccCCCccccceEEEEECCCCcEecccc---cCCCCCCCCcceEEEECCceEEEEeCCCCCccceEEEE
Confidence 78999999999997654 35799999999999997431 2345788999999988 799999999888776766666
Q ss_pred CCC
Q 011881 420 PRD 422 (475)
Q Consensus 420 ~~~ 422 (475)
+++
T Consensus 107 ~~t 109 (398)
T PLN02772 107 VDT 109 (398)
T ss_pred cCC
Confidence 654
No 52
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.03 E-value=0.00018 Score=66.23 Aligned_cols=135 Identities=16% Similarity=0.216 Sum_probs=83.5
Q ss_pred CeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCC----Cc
Q 011881 246 QSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDT----NS 321 (475)
Q Consensus 246 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~----~~ 321 (475)
.....||+.+++++.+.-....-+. .++..-+|++.+.||..... .+...|++.+ ..
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCS---------------gg~~L~dG~ll~tGG~~~G~----~~ir~~~p~~~~~~~~ 106 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCS---------------GGAFLPDGRLLQTGGDNDGN----KAIRIFTPCTSDGTCD 106 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCccc---------------CcCCCCCCCEEEeCCCCccc----cceEEEecCCCCCCCC
Confidence 4467899999999988654333333 33455689999999965421 2236788765 67
Q ss_pred eEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCC-----cEEEcCCcCccccCCCCCCCeEEE
Q 011881 322 WVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKED-----TWKVVIGKVPIRDFADSESPYLLS 396 (475)
Q Consensus 322 W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~-----~W~~v~~~~p~~~~~~~r~~~~~~ 396 (475)
|.+....|.. .|...++...-||+++|+||... ...+.+..... .|..+.. .. ...+..-+.+..+
T Consensus 107 w~e~~~~m~~----~RWYpT~~~L~DG~vlIvGG~~~---~t~E~~P~~~~~~~~~~~~~l~~-~~-~~~~~nlYP~~~l 177 (243)
T PF07250_consen 107 WTESPNDMQS----GRWYPTATTLPDGRVLIVGGSNN---PTYEFWPPKGPGPGPVTLPFLSQ-TS-DTLPNNLYPFVHL 177 (243)
T ss_pred ceECcccccC----CCccccceECCCCCEEEEeCcCC---CcccccCCccCCCCceeeecchh-hh-ccCccccCceEEE
Confidence 9887764543 55555546667999999999762 23444433221 1221210 00 1233445556777
Q ss_pred EeCCeEEEEeec
Q 011881 397 AFHGKLHVLTKD 408 (475)
Q Consensus 397 ~~~~~l~v~GG~ 408 (475)
.-+|+||+++..
T Consensus 178 lPdG~lFi~an~ 189 (243)
T PF07250_consen 178 LPDGNLFIFANR 189 (243)
T ss_pred cCCCCEEEEEcC
Confidence 779999999974
No 53
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.01 E-value=6.6e-06 Score=53.55 Aligned_cols=39 Identities=38% Similarity=0.720 Sum_probs=35.8
Q ss_pred CCHHHHHHHhccCChhhhHHHHHhhhhhhhhcCChhhHH
Q 011881 46 LPDELSIQILARVPRIFYLNLRAVSRKWKATVTSPELFE 84 (475)
Q Consensus 46 LP~dl~~~iL~~lp~~~l~~l~~vck~W~~l~~s~~~~~ 84 (475)
||+|++.+||.+++..++.+++.|||+|+.++..+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999998876643
No 54
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.92 E-value=2.8e-06 Score=57.61 Aligned_cols=42 Identities=36% Similarity=0.651 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHhccCChhhhHHHHHhhhhhhhhcCChhhHH
Q 011881 43 IPSLPDELSIQILARVPRIFYLNLRAVSRKWKATVTSPELFE 84 (475)
Q Consensus 43 ~~~LP~dl~~~iL~~lp~~~l~~l~~vck~W~~l~~s~~~~~ 84 (475)
|..||+|++.+||.+|+..++.+++.|||+|++++.++.+..
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence 457999999999999999999999999999999999887754
No 55
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.81 E-value=0.0092 Score=58.67 Aligned_cols=129 Identities=14% Similarity=0.176 Sum_probs=84.0
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCc-ccCCeEEEE--eC-
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGL-TPLQSAEVF--DP- 253 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~-~~~~~~~~y--d~- 253 (475)
.+++|+.++.. ..+.+||..|..-..+|.|+.+.....++.++++||++.......... ......|++ ++
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccc
Confidence 58899988653 358999999999999999888877777888899999998763221110 000144444 42
Q ss_pred -------CCCCeEecCCCCccccCCCCccccccccccceeeEEEe-CCEEEE-eccCCCCCceeccceEEEeCCCCceEE
Q 011881 254 -------TTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY-MGRLCV-PQSLYSWPFFVDVGGEIYDPDTNSWVE 324 (475)
Q Consensus 254 -------~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv-~GG~~~~~~~~~~~~~~yd~~~~~W~~ 324 (475)
..-.|+.+++.|.......... .+.+.+++ +..|+| .-|.. .|.+.||+++.+|++
T Consensus 149 ~~~~~~~~~w~W~~LP~PPf~~~~~~~~~--------~i~sYavv~g~~I~vS~~~~~-------~GTysfDt~~~~W~~ 213 (342)
T PF07893_consen 149 PDDPSPEESWSWRSLPPPPFVRDRRYSDY--------RITSYAVVDGRTIFVSVNGRR-------WGTYSFDTESHEWRK 213 (342)
T ss_pred cccccCCCcceEEcCCCCCccccCCcccc--------eEEEEEEecCCeEEEEecCCc-------eEEEEEEcCCcceee
Confidence 2336888877665443310000 01555666 667888 33211 256999999999999
Q ss_pred cCC
Q 011881 325 MPI 327 (475)
Q Consensus 325 ~~~ 327 (475)
+..
T Consensus 214 ~Gd 216 (342)
T PF07893_consen 214 HGD 216 (342)
T ss_pred ccc
Confidence 865
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.64 E-value=0.039 Score=55.56 Aligned_cols=189 Identities=14% Similarity=0.106 Sum_probs=104.0
Q ss_pred EEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCC--ccceeeeEEECCEEEEEeceecCCCCcccCCeEEE
Q 011881 175 IGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSV--GRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEV 250 (475)
Q Consensus 175 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 250 (475)
.++.++.+|+..+ ...++.+|+.+.+ |+.-...|. .+...+-++.++.+|+..+ ...+..
T Consensus 156 P~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~----------~g~v~a 219 (394)
T PRK11138 156 PVVSDGLVLVHTS------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD----------NGRVSA 219 (394)
T ss_pred CEEECCEEEEECC------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC----------CCEEEE
Confidence 3456788887543 2478999998876 886533221 1222344556777777543 246788
Q ss_pred EeCCCCC--eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCc--eEEcC
Q 011881 251 FDPTTDA--WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNS--WVEMP 326 (475)
Q Consensus 251 yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~ 326 (475)
+|+++++ |+.-...|...... ..+..+...-++.++.+|+.+. + -...++|+++++ |+.--
T Consensus 220 ~d~~~G~~~W~~~~~~~~~~~~~-------~~~~~~~~sP~v~~~~vy~~~~-~-------g~l~ald~~tG~~~W~~~~ 284 (394)
T PRK11138 220 VLMEQGQLIWQQRISQPTGATEI-------DRLVDVDTTPVVVGGVVYALAY-N-------GNLVALDLRSGQIVWKREY 284 (394)
T ss_pred EEccCChhhheeccccCCCccch-------hcccccCCCcEEECCEEEEEEc-C-------CeEEEEECCCCCEEEeecC
Confidence 8888764 87432112110000 0000000233466889998542 1 123788998775 87521
Q ss_pred CCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc--EEEcCCcCccccCCCCCCCeEEEEeCCeEEE
Q 011881 327 IGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT--WKVVIGKVPIRDFADSESPYLLSAFHGKLHV 404 (475)
Q Consensus 327 ~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~--W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v 404 (475)
. . .. . .++.+++||+... ...++.+|+++.+ |+.-. . ..+...+.++.+|+||+
T Consensus 285 ~---~----~~-~---~~~~~~~vy~~~~-----~g~l~ald~~tG~~~W~~~~--~------~~~~~~sp~v~~g~l~v 340 (394)
T PRK11138 285 G---S----VN-D---FAVDGGRIYLVDQ-----NDRVYALDTRGGVELWSQSD--L------LHRLLTAPVLYNGYLVV 340 (394)
T ss_pred C---C----cc-C---cEEECCEEEEEcC-----CCeEEEEECCCCcEEEcccc--c------CCCcccCCEEECCEEEE
Confidence 1 1 11 1 4668999999863 2579999998764 86421 0 11122244567888887
Q ss_pred EeecCCCCeeEEEecCCC
Q 011881 405 LTKDASRNISILRADPRD 422 (475)
Q Consensus 405 ~GG~~~~~~~v~~~d~~~ 422 (475)
.... + .+.++|..+
T Consensus 341 ~~~~-G---~l~~ld~~t 354 (394)
T PRK11138 341 GDSE-G---YLHWINRED 354 (394)
T ss_pred EeCC-C---EEEEEECCC
Confidence 5322 2 255566543
No 57
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.53 E-value=0.052 Score=54.71 Aligned_cols=168 Identities=14% Similarity=0.109 Sum_probs=96.3
Q ss_pred eEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCCc-----c---ceeeeEEECCEEEEEeceecCCCCcc
Q 011881 174 AIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSVG-----R---AYCKTGILNDKLYVVGGVSRARGGLT 243 (475)
Q Consensus 174 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~-----R---~~~~~~~~~~~iyv~GG~~~~~~~~~ 243 (475)
+.++.++.+|+..+ ...+..+|+.+.+ |+.--..+.. | ...+.++.++.+|+.+.
T Consensus 200 sP~v~~~~v~~~~~------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~--------- 264 (394)
T PRK11138 200 APATAFGGAIVGGD------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY--------- 264 (394)
T ss_pred CCEEECCEEEEEcC------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc---------
Confidence 34455777776543 2367888888764 8743211111 1 12344567899998653
Q ss_pred cCCeEEEEeCCCCC--eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCc
Q 011881 244 PLQSAEVFDPTTDA--WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNS 321 (475)
Q Consensus 244 ~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 321 (475)
...+..+|+.+++ |+.- .... ...+..+++||+.... -...++|+++++
T Consensus 265 -~g~l~ald~~tG~~~W~~~--~~~~------------------~~~~~~~~~vy~~~~~--------g~l~ald~~tG~ 315 (394)
T PRK11138 265 -NGNLVALDLRSGQIVWKRE--YGSV------------------NDFAVDGGRIYLVDQN--------DRVYALDTRGGV 315 (394)
T ss_pred -CCeEEEEECCCCCEEEeec--CCCc------------------cCcEEECCEEEEEcCC--------CeEEEEECCCCc
Confidence 1478999998875 8752 1110 2345678999986531 123788888764
Q ss_pred --eEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc--EEEcCCcCccccCCCCCCCeEEEE
Q 011881 322 --WVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT--WKVVIGKVPIRDFADSESPYLLSA 397 (475)
Q Consensus 322 --W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~--W~~v~~~~p~~~~~~~r~~~~~~~ 397 (475)
|+.-.. .. .. .+..++.+++||+... ...++++|+.+.+ |+.- ........+.++
T Consensus 316 ~~W~~~~~--~~----~~--~~sp~v~~g~l~v~~~-----~G~l~~ld~~tG~~~~~~~--------~~~~~~~s~P~~ 374 (394)
T PRK11138 316 ELWSQSDL--LH----RL--LTAPVLYNGYLVVGDS-----EGYLHWINREDGRFVAQQK--------VDSSGFLSEPVV 374 (394)
T ss_pred EEEccccc--CC----Cc--ccCCEEECCEEEEEeC-----CCEEEEEECCCCCEEEEEE--------cCCCcceeCCEE
Confidence 864221 00 11 1114567999998653 2478899998875 6541 111112234456
Q ss_pred eCCeEEEEe
Q 011881 398 FHGKLHVLT 406 (475)
Q Consensus 398 ~~~~l~v~G 406 (475)
.+++|||-.
T Consensus 375 ~~~~l~v~t 383 (394)
T PRK11138 375 ADDKLLIQA 383 (394)
T ss_pred ECCEEEEEe
Confidence 788888753
No 58
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.22 E-value=0.023 Score=55.92 Aligned_cols=126 Identities=13% Similarity=0.118 Sum_probs=79.5
Q ss_pred ECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCC
Q 011881 225 LNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSW 304 (475)
Q Consensus 225 ~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~ 304 (475)
.+.||+..+.. ..+.+||++|..-...|.|+.+... ..++.++++||++......
T Consensus 75 ~gskIv~~d~~----------~~t~vyDt~t~av~~~P~l~~pk~~---------------pisv~VG~~LY~m~~~~~~ 129 (342)
T PF07893_consen 75 HGSKIVAVDQS----------GRTLVYDTDTRAVATGPRLHSPKRC---------------PISVSVGDKLYAMDRSPFP 129 (342)
T ss_pred cCCeEEEEcCC----------CCeEEEECCCCeEeccCCCCCCCcc---------------eEEEEeCCeEEEeeccCcc
Confidence 58899998653 3588999999988877877766655 4556679999999775433
Q ss_pred Ccee-----ccceEEEe--------CCCCceEEcCCCCCCCCCCccCC----CeEEEEE-CCeEEE-EcCCCCCCCCeEE
Q 011881 305 PFFV-----DVGGEIYD--------PDTNSWVEMPIGMGEGWPARQAG----TKLSVVL-DGELYA-FDPSSSLNSAKIK 365 (475)
Q Consensus 305 ~~~~-----~~~~~~yd--------~~~~~W~~~~~~~~~~~p~~~~~----~~~~~~~-~~~lyv-~GG~~~~~~~~v~ 365 (475)
.... ......|+ ...-.|+.++++. ++..... ..+.+++ +..|+| ..+.. ...+
T Consensus 130 ~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PP---f~~~~~~~~~~i~sYavv~g~~I~vS~~~~~----~GTy 202 (342)
T PF07893_consen 130 EPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPPP---FVRDRRYSDYRITSYAVVDGRTIFVSVNGRR----WGTY 202 (342)
T ss_pred ccccCccceeEEEeccccccccccCCCcceEEcCCCCC---ccccCCcccceEEEEEEecCCeEEEEecCCc----eEEE
Confidence 2111 12223444 2233677776532 1122111 3335566 667888 44321 2589
Q ss_pred EEeCCCCcEEEcCC-cCc
Q 011881 366 VYDQKEDTWKVVIG-KVP 382 (475)
Q Consensus 366 ~yd~~~~~W~~v~~-~~p 382 (475)
.||.++.+|+++.. .+|
T Consensus 203 sfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 203 SFDTESHEWRKHGDWMLP 220 (342)
T ss_pred EEEcCCcceeeccceecC
Confidence 99999999999854 344
No 59
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.22 E-value=0.02 Score=52.76 Aligned_cols=106 Identities=9% Similarity=0.036 Sum_probs=67.9
Q ss_pred EEE-EcCCC-CCCCcceEEEEeCCCCc--------E---EeCCCCCCccceeeeEEE--CC--EEEEEeceecCCCC---
Q 011881 182 LYV-LGGFS-RTSAMRCVRRYDPIANT--------W---NEATSMSVGRAYCKTGIL--ND--KLYVVGGVSRARGG--- 241 (475)
Q Consensus 182 lyv-~GG~~-~~~~~~~~~~yd~~t~~--------W---~~~~~~p~~R~~~~~~~~--~~--~iyv~GG~~~~~~~--- 241 (475)
.|+ -||.. +++..+.+|+....... . ..+.++|.+|++|++-++ .| ...+|||...-..+
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 454 47765 34556677776554432 1 123689999999998776 33 47788986431111
Q ss_pred ---c----ccCCeEEEEeCCCCCeEe--cCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCC
Q 011881 242 ---L----TPLQSAEVFDPTTDAWSE--VPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLY 302 (475)
Q Consensus 242 ---~----~~~~~~~~yd~~t~~W~~--~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~ 302 (475)
+ .....|+..|++-+..+. ++.+....+- |.+..-++.+|++||..
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SF---------------Hvslar~D~VYilGGHs 174 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSF---------------HVSLARNDCVYILGGHS 174 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccchhhcCCeEE---------------EEEEecCceEEEEccEE
Confidence 1 123457778888777663 4555555544 77788899999999964
No 60
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.20 E-value=0.23 Score=49.66 Aligned_cols=169 Identities=17% Similarity=0.156 Sum_probs=93.3
Q ss_pred eEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCCcc--------ceeeeEEECCEEEEEeceecCCCCcc
Q 011881 174 AIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSVGR--------AYCKTGILNDKLYVVGGVSRARGGLT 243 (475)
Q Consensus 174 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~R--------~~~~~~~~~~~iyv~GG~~~~~~~~~ 243 (475)
+.++.++.+|+ |.. ...+..+|+.+.+ |+.--..+..+ ...+.++.++.+|+...
T Consensus 185 sp~~~~~~v~~-~~~-----~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~--------- 249 (377)
T TIGR03300 185 SPVIADGGVLV-GFA-----GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY--------- 249 (377)
T ss_pred CCEEECCEEEE-ECC-----CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc---------
Confidence 34455666654 332 1368899988764 86432212111 12234456888888653
Q ss_pred cCCeEEEEeCCCCC--eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCc
Q 011881 244 PLQSAEVFDPTTDA--WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNS 321 (475)
Q Consensus 244 ~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 321 (475)
...+..||+++++ |+.-. + .. ...+..+++||+.... -...++|..+++
T Consensus 250 -~g~l~a~d~~tG~~~W~~~~--~---~~---------------~~p~~~~~~vyv~~~~--------G~l~~~d~~tG~ 300 (377)
T TIGR03300 250 -QGRVAALDLRSGRVLWKRDA--S---SY---------------QGPAVDDNRLYVTDAD--------GVVVALDRRSGS 300 (377)
T ss_pred -CCEEEEEECCCCcEEEeecc--C---Cc---------------cCceEeCCEEEEECCC--------CeEEEEECCCCc
Confidence 2468999998765 86531 1 11 2345678899986421 123788887764
Q ss_pred --eEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc--EEEcCCcCccccCCCCCCCeEEEE
Q 011881 322 --WVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT--WKVVIGKVPIRDFADSESPYLLSA 397 (475)
Q Consensus 322 --W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~--W~~v~~~~p~~~~~~~r~~~~~~~ 397 (475)
|+.-. +. ... .+..++.+++||+... ...++++|+.+.+ |+. + ........+.+.
T Consensus 301 ~~W~~~~--~~----~~~--~ssp~i~g~~l~~~~~-----~G~l~~~d~~tG~~~~~~-~-------~~~~~~~~sp~~ 359 (377)
T TIGR03300 301 ELWKNDE--LK----YRQ--LTAPAVVGGYLVVGDF-----EGYLHWLSREDGSFVARL-K-------TDGSGIASPPVV 359 (377)
T ss_pred EEEcccc--cc----CCc--cccCEEECCEEEEEeC-----CCEEEEEECCCCCEEEEE-E-------cCCCccccCCEE
Confidence 86522 11 011 1113557888887642 2479999987664 543 1 111112234567
Q ss_pred eCCeEEEEee
Q 011881 398 FHGKLHVLTK 407 (475)
Q Consensus 398 ~~~~l~v~GG 407 (475)
.+++||+.+.
T Consensus 360 ~~~~l~v~~~ 369 (377)
T TIGR03300 360 VGDGLLVQTR 369 (377)
T ss_pred ECCEEEEEeC
Confidence 7888886553
No 61
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.12 E-value=0.17 Score=46.66 Aligned_cols=155 Identities=22% Similarity=0.254 Sum_probs=89.5
Q ss_pred EEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--EE-eCCCCCCc--cceeeeEEECCEEEEEeceecCCCCcccCCeEE
Q 011881 175 IGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--WN-EATSMSVG--RAYCKTGILNDKLYVVGGVSRARGGLTPLQSAE 249 (475)
Q Consensus 175 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~-~~~~~p~~--R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 249 (475)
....++.||+..+ .+.++.+|..+.+ |+ .....+.. +......+.++.+|+... ...+.
T Consensus 72 ~~~~~~~v~v~~~------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~l~ 135 (238)
T PF13360_consen 72 PVVDGGRVYVGTS------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----------SGKLV 135 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----------CSEEE
T ss_pred eeecccccccccc------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----------cCcEE
Confidence 4677889988762 1389999988775 98 44332322 233344455778877763 25789
Q ss_pred EEeCCCCC--eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCc--eEEc
Q 011881 250 VFDPTTDA--WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNS--WVEM 325 (475)
Q Consensus 250 ~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~ 325 (475)
.+|+++++ |+.-...+...... ..+.......+..++.+|+..+... ...+|..+++ |+..
T Consensus 136 ~~d~~tG~~~w~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~g~--------~~~~d~~tg~~~w~~~ 200 (238)
T PF13360_consen 136 ALDPKTGKLLWKYPVGEPRGSSPI-------SSFSDINGSPVISDGRVYVSSGDGR--------VVAVDLATGEKLWSKP 200 (238)
T ss_dssp EEETTTTEEEEEEESSTT-SS--E-------EEETTEEEEEECCTTEEEEECCTSS--------EEEEETTTTEEEEEEC
T ss_pred EEecCCCcEEEEeecCCCCCCcce-------eeecccccceEEECCEEEEEcCCCe--------EEEEECCCCCEEEEec
Confidence 99999875 87643333211100 0000011334445688998765221 2556999987 8544
Q ss_pred CCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc--EE
Q 011881 326 PIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT--WK 375 (475)
Q Consensus 326 ~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~--W~ 375 (475)
. . .. .......++.||+.. . .+.++++|+++++ |+
T Consensus 201 -~-~------~~--~~~~~~~~~~l~~~~-~----~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 201 -I-S------GI--YSLPSVDGGTLYVTS-S----DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -S-S-------E--CECEECCCTEEEEEE-T----TTEEEEEETTTTEEEEE
T ss_pred -C-C------Cc--cCCceeeCCEEEEEe-C----CCEEEEEECCCCCEEeE
Confidence 2 1 10 111355677788876 2 2589999999875 65
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.02 E-value=0.41 Score=47.81 Aligned_cols=155 Identities=16% Similarity=0.171 Sum_probs=84.1
Q ss_pred EEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCC--ccceeeeEEECCEEEEEeceecCCCCcccCCeEEE
Q 011881 175 IGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSV--GRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEV 250 (475)
Q Consensus 175 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 250 (475)
.++.++.+|+..+ ...++.+|+.+.+ |+.-...+. .+...+.++.++.+|+ |.. ...+..
T Consensus 141 p~v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~---------~g~v~a 204 (377)
T TIGR03300 141 PLVANGLVVVRTN------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFA---------GGKLVA 204 (377)
T ss_pred CEEECCEEEEECC------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECC---------CCEEEE
Confidence 3446778877543 2468999998764 875432221 1222344556776654 331 246888
Q ss_pred EeCCCCC--eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCc--eEEcC
Q 011881 251 FDPTTDA--WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNS--WVEMP 326 (475)
Q Consensus 251 yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~ 326 (475)
+|+++++ |+.--..+....... .+..+....+..++.+|+... + -...+||+++++ |+.-.
T Consensus 205 ld~~tG~~~W~~~~~~~~g~~~~~-------~~~~~~~~p~~~~~~vy~~~~-~-------g~l~a~d~~tG~~~W~~~~ 269 (377)
T TIGR03300 205 LDLQTGQPLWEQRVALPKGRTELE-------RLVDVDGDPVVDGGQVYAVSY-Q-------GRVAALDLRSGRVLWKRDA 269 (377)
T ss_pred EEccCCCEeeeeccccCCCCCchh-------hhhccCCccEEECCEEEEEEc-C-------CEEEEEECCCCcEEEeecc
Confidence 9988764 864322121110000 000000223456788888532 1 123788988764 76531
Q ss_pred CCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCC--cEEE
Q 011881 327 IGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKED--TWKV 376 (475)
Q Consensus 327 ~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~--~W~~ 376 (475)
. . ....++.+++||+... ...++++|..+. .|+.
T Consensus 270 ~--------~---~~~p~~~~~~vyv~~~-----~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 270 S--------S---YQGPAVDDNRLYVTDA-----DGVVVALDRRSGSELWKN 305 (377)
T ss_pred C--------C---ccCceEeCCEEEEECC-----CCeEEEEECCCCcEEEcc
Confidence 1 1 1114567899998753 257999999776 4865
No 63
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.91 E-value=0.0097 Score=56.13 Aligned_cols=42 Identities=24% Similarity=0.483 Sum_probs=37.6
Q ss_pred CCCCC----HHHHHHHhccCChhhhHHHHHhhhhhhhhcCChhhHH
Q 011881 43 IPSLP----DELSIQILARVPRIFYLNLRAVSRKWKATVTSPELFE 84 (475)
Q Consensus 43 ~~~LP----~dl~~~iL~~lp~~~l~~l~~vck~W~~l~~s~~~~~ 84 (475)
+..|| +++.+.||+.|-..+|+....|||+|+.++..+-+-+
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 45789 9999999999999999999999999999998886543
No 64
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=96.57 E-value=0.21 Score=44.79 Aligned_cols=156 Identities=16% Similarity=0.146 Sum_probs=76.9
Q ss_pred EEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcE--EeC----CCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCe
Q 011881 175 IGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTW--NEA----TSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQS 247 (475)
Q Consensus 175 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W--~~~----~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 247 (475)
+....+++|+|-| +.+|+++...... +.+ +.+|. ....+.... ++++|+|-| +.
T Consensus 12 ~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg-----------~~ 72 (194)
T cd00094 12 VTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG-----------DK 72 (194)
T ss_pred EEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC-----------CE
Confidence 3445689999966 3678877652211 111 22222 122222222 389999977 36
Q ss_pred EEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCceEEc
Q 011881 248 AEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEM 325 (475)
Q Consensus 248 ~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~ 325 (475)
.++||..+..+.-...+.. .+ .+. ....+ -++... ++++|+|.|. .-++||...++-..-
T Consensus 73 yw~~~~~~~~~~~Pk~i~~--~~-~~~-----~~~~i-DAA~~~~~~~~~yfFkg~---------~y~ry~~~~~~v~~~ 134 (194)
T cd00094 73 YWVYTGKNLEPGYPKPISD--LG-FPP-----TVKQI-DAALRWPDNGKTYFFKGD---------KYWRYDEKTQKMDPG 134 (194)
T ss_pred EEEEcCcccccCCCcchhh--cC-CCC-----CCCCc-cEEEEEcCCCEEEEEeCC---------EEEEEeCCCccccCC
Confidence 7888766522211001100 00 000 00000 223333 6899998773 237888766554321
Q ss_pred -CCCCCCCCCCccCCCeEEEEEC-CeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 326 -PIGMGEGWPARQAGTKLSVVLD-GELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 326 -~~~~~~~~p~~~~~~~~~~~~~-~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
+..+...|+.-.....++...+ +++|++-| +..+.||..+++
T Consensus 135 yP~~i~~~w~g~p~~idaa~~~~~~~~yfF~g------~~y~~~d~~~~~ 178 (194)
T cd00094 135 YPKLIETDFPGVPDKVDAAFRWLDGYYYFFKG------DQYWRFDPRSKE 178 (194)
T ss_pred CCcchhhcCCCcCCCcceeEEeCCCcEEEEEC------CEEEEEeCccce
Confidence 1111111221111122233344 89999987 689999998776
No 65
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.16 E-value=1 Score=41.31 Aligned_cols=167 Identities=20% Similarity=0.200 Sum_probs=92.5
Q ss_pred eEEEEeCCCCc--EEeCCCCCCccceee--eEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCC--eEecCCCCcccc
Q 011881 196 CVRRYDPIANT--WNEATSMSVGRAYCK--TGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA--WSEVPSMPFSRA 269 (475)
Q Consensus 196 ~~~~yd~~t~~--W~~~~~~p~~R~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~ 269 (475)
.+..+|+.+.+ |+.- +..+..... .+..++.+|+..+ ...+..||..+++ |+.-. +.+..
T Consensus 4 ~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~----------~~~l~~~d~~tG~~~W~~~~--~~~~~ 69 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG----------DGNLYALDAKTGKVLWRFDL--PGPIS 69 (238)
T ss_dssp EEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET----------TSEEEEEETTTSEEEEEEEC--SSCGG
T ss_pred EEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC----------CCEEEEEECCCCCEEEEeec--ccccc
Confidence 56778887665 7762 211222222 3447899999853 3689999998875 77643 22222
Q ss_pred CCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCc--eEE-cCCCCCCCCCCccCCCeEEEEE
Q 011881 270 QGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNS--WVE-MPIGMGEGWPARQAGTKLSVVL 346 (475)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~-~~~~~~~~~p~~~~~~~~~~~~ 346 (475)
......++.+|+.... .....+|.++++ |+. ... . . +..........+.
T Consensus 70 ----------------~~~~~~~~~v~v~~~~--------~~l~~~d~~tG~~~W~~~~~~-~-~--~~~~~~~~~~~~~ 121 (238)
T PF13360_consen 70 ----------------GAPVVDGGRVYVGTSD--------GSLYALDAKTGKVLWSIYLTS-S-P--PAGVRSSSSPAVD 121 (238)
T ss_dssp ----------------SGEEEETTEEEEEETT--------SEEEEEETTTSCEEEEEEE-S-S-C--TCSTB--SEEEEE
T ss_pred ----------------ceeeecccccccccce--------eeeEecccCCcceeeeecccc-c-c--ccccccccCceEe
Confidence 1236778888886421 123789977765 983 432 1 1 1111122224555
Q ss_pred CCeEEEEcCCCCCCCCeEEEEeCCCCc--EEEcCCcCccccCC---CCCCCeEEEEeCCeEEEEeecCC
Q 011881 347 DGELYAFDPSSSLNSAKIKVYDQKEDT--WKVVIGKVPIRDFA---DSESPYLLSAFHGKLHVLTKDAS 410 (475)
Q Consensus 347 ~~~lyv~GG~~~~~~~~v~~yd~~~~~--W~~v~~~~p~~~~~---~~r~~~~~~~~~~~l~v~GG~~~ 410 (475)
++.+|+... ...+..+|+++.+ |+.-. ..+....+ ........+..++.+|+..+...
T Consensus 122 ~~~~~~~~~-----~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~ 184 (238)
T PF13360_consen 122 GDRLYVGTS-----SGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR 184 (238)
T ss_dssp TTEEEEEET-----CSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEECCTTEEEEECCTSS
T ss_pred cCEEEEEec-----cCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceEEECCEEEEEcCCCe
Confidence 777777653 3589999998765 77632 22110000 01112344455688888776553
No 66
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.0085 Score=55.94 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHhccCChhhhHHHHHhhhhhhhhcCChh
Q 011881 43 IPSLPDELSIQILARVPRIFYLNLRAVSRKWKATVTSPE 81 (475)
Q Consensus 43 ~~~LP~dl~~~iL~~lp~~~l~~l~~vck~W~~l~~s~~ 81 (475)
|-+||||+++.||+.|+.+.|.++..|||+|..+.....
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 679999999999999999999999999999999866544
No 67
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.83 E-value=0.13 Score=48.78 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=67.1
Q ss_pred cCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEe-CCEEEEeccCCCCCceeccceEEEeCCCCce
Q 011881 244 PLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY-MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSW 322 (475)
Q Consensus 244 ~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 322 (475)
....+-.||+.+.+|..+..-- .+ ....+... +++||+.|-+.-... .......||.++.+|
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i---~G-------------~V~~l~~~~~~~Llv~G~ft~~~~-~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGI---SG-------------TVTDLQWASNNQLLVGGNFTLNGT-NSSNLATYDFKNQTW 76 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCc---eE-------------EEEEEEEecCCEEEEEEeeEECCC-CceeEEEEecCCCee
Confidence 3678999999999999876431 11 00344433 677887665432220 112337899999999
Q ss_pred EEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCC
Q 011881 323 VEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIG 379 (475)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~ 379 (475)
+.++.......|.+.........-...+++.|.. .....-+..|| ..+|+.+..
T Consensus 77 ~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 77 SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred eecCCcccccCCCcEEEEEeeccCCceEEEecee-cCCCceEEEEc--CCceEeccc
Confidence 9887633222333321111011123457777765 33345677774 668999864
No 68
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=95.18 E-value=0.84 Score=42.50 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=51.0
Q ss_pred CCCCCCCccCCCeEEEEE-CCe--EEEEcCCCCCCC---------------CeEEEEeCCCCcEEEcCCcCccccCCCCC
Q 011881 329 MGEGWPARQAGTKLSVVL-DGE--LYAFDPSSSLNS---------------AKIKVYDQKEDTWKVVIGKVPIRDFADSE 390 (475)
Q Consensus 329 ~~~~~p~~~~~~~~~~~~-~~~--lyv~GG~~~~~~---------------~~v~~yd~~~~~W~~v~~~~p~~~~~~~r 390 (475)
+....|.+|.||+..+++ .|| ..+|||...... ..|+..|++-+..+.- .+| .+...-
T Consensus 80 LvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah--~lp--El~dG~ 155 (337)
T PF03089_consen 80 LVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAH--TLP--ELQDGQ 155 (337)
T ss_pred ecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccc--cch--hhcCCe
Confidence 444568899999866654 343 677899643211 2677778877766542 223 455667
Q ss_pred CCeEEEEeCCeEEEEeec
Q 011881 391 SPYLLSAFHGKLHVLTKD 408 (475)
Q Consensus 391 ~~~~~~~~~~~l~v~GG~ 408 (475)
+.|...+-++.+|++||-
T Consensus 156 SFHvslar~D~VYilGGH 173 (337)
T PF03089_consen 156 SFHVSLARNDCVYILGGH 173 (337)
T ss_pred EEEEEEecCceEEEEccE
Confidence 778888899999999993
No 69
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.13 E-value=1.2 Score=43.39 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=88.1
Q ss_pred CEEEEEeceecCCCCcccC-CeEEEEeCCCC-----CeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEecc
Q 011881 227 DKLYVVGGVSRARGGLTPL-QSAEVFDPTTD-----AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQS 300 (475)
Q Consensus 227 ~~iyv~GG~~~~~~~~~~~-~~~~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG 300 (475)
...+++|-........... ..+.+|+..+. +.+.+.....+-.- .+++.++++|.+.-|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V---------------~ai~~~~~~lv~~~g 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPV---------------TAICSFNGRLVVAVG 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-E---------------EEEEEETTEEEEEET
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcc---------------eEhhhhCCEEEEeec
Confidence 3566666543222222223 67889998885 45555333221111 677888999766544
Q ss_pred CCCCCceeccceEEEeCCCCc-eEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCC
Q 011881 301 LYSWPFFVDVGGEIYDPDTNS-WVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIG 379 (475)
Q Consensus 301 ~~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~ 379 (475)
....+|+...++ +..... ... . .....+.+.++.|++-.-..+ -.+..|+.+.++-..+..
T Consensus 107 ---------~~l~v~~l~~~~~l~~~~~-~~~----~-~~i~sl~~~~~~I~vgD~~~s---v~~~~~~~~~~~l~~va~ 168 (321)
T PF03178_consen 107 ---------NKLYVYDLDNSKTLLKKAF-YDS----P-FYITSLSVFKNYILVGDAMKS---VSLLRYDEENNKLILVAR 168 (321)
T ss_dssp ---------TEEEEEEEETTSSEEEEEE-E-B----S-SSEEEEEEETTEEEEEESSSS---EEEEEEETTTE-EEEEEE
T ss_pred ---------CEEEEEEccCcccchhhhe-ecc----e-EEEEEEeccccEEEEEEcccC---EEEEEEEccCCEEEEEEe
Confidence 233778888777 777654 211 1 123335677887776543222 256677886666666642
Q ss_pred cCccccCCCCCCCeEEEEe-CCeEEEEeecCCCCeeEEEecCC
Q 011881 380 KVPIRDFADSESPYLLSAF-HGKLHVLTKDASRNISILRADPR 421 (475)
Q Consensus 380 ~~p~~~~~~~r~~~~~~~~-~~~l~v~GG~~~~~~~v~~~d~~ 421 (475)
-..++...++..+ ++. .++++....++.++.++..
T Consensus 169 ------d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 169 ------DYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp ------ESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS
T ss_pred ------cCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCC
Confidence 1223444555566 666 7888888888888888764
No 70
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.85 E-value=0.54 Score=44.64 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=46.6
Q ss_pred CcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCC
Q 011881 193 AMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPS 263 (475)
Q Consensus 193 ~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 263 (475)
.-..+..||..+.+|..+..--...- ..+... +++||+.|-...... ....+-.||..+.+|+.++.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V-~~l~~~~~~~Llv~G~ft~~~~---~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTV-TDLQWASNNQLLVGGNFTLNGT---NSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEE-EEEEEecCCEEEEEEeeEECCC---CceeEEEEecCCCeeeecCC
Confidence 36689999999999998865422221 223333 778888886543321 24678899999999998866
No 71
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.62 E-value=1.3 Score=41.26 Aligned_cols=162 Identities=22% Similarity=0.300 Sum_probs=93.8
Q ss_pred eEEE-eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEe
Q 011881 174 AIGA-VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFD 252 (475)
Q Consensus 174 ~~~~-~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd 252 (475)
++.. .++.||.--|..+ .+.+.+||+.|++-....++|..-.+=+++.++++||.+-= ......+||
T Consensus 49 GL~~~~~g~LyESTG~yG---~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW---------k~~~~f~yd 116 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG---QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW---------KEGTGFVYD 116 (264)
T ss_dssp EEEEEETTEEEEEECSTT---EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES---------SSSEEEEEE
T ss_pred cEEecCCCEEEEeCCCCC---cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe---------cCCeEEEEc
Confidence 4444 6788888766544 36889999999987777778776677789999999999852 246889999
Q ss_pred CCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEE-cCCCCCC
Q 011881 253 PTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE-MPIGMGE 331 (475)
Q Consensus 253 ~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~ 331 (475)
+.+ .+.+...+.+..+ -+++.-+..+++--|.+. ....||++-+=.. +.. ...
T Consensus 117 ~~t--l~~~~~~~y~~EG---------------WGLt~dg~~Li~SDGS~~--------L~~~dP~~f~~~~~i~V-~~~ 170 (264)
T PF05096_consen 117 PNT--LKKIGTFPYPGEG---------------WGLTSDGKRLIMSDGSSR--------LYFLDPETFKEVRTIQV-TDN 170 (264)
T ss_dssp TTT--TEEEEEEE-SSS-----------------EEEECSSCEEEE-SSSE--------EEEE-TTT-SEEEEEE--EET
T ss_pred ccc--ceEEEEEecCCcc---------------eEEEcCCCEEEEECCccc--------eEEECCcccceEEEEEE-EEC
Confidence 986 4555555555454 567777777888655322 2677887543221 111 000
Q ss_pred CCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc---EEEcCC
Q 011881 332 GWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT---WKVVIG 379 (475)
Q Consensus 332 ~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~---W~~v~~ 379 (475)
+.|.... --.-.++|.||.= -...+.|.+-||++++ |..+..
T Consensus 171 g~pv~~L--NELE~i~G~IyAN----VW~td~I~~Idp~tG~V~~~iDls~ 215 (264)
T PF05096_consen 171 GRPVSNL--NELEYINGKIYAN----VWQTDRIVRIDPETGKVVGWIDLSG 215 (264)
T ss_dssp TEE---E--EEEEEETTEEEEE----ETTSSEEEEEETTT-BEEEEEE-HH
T ss_pred CEECCCc--EeEEEEcCEEEEE----eCCCCeEEEEeCCCCeEEEEEEhhH
Confidence 0011110 0022345655542 1234789999999986 555543
No 72
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.56 E-value=0.029 Score=52.68 Aligned_cols=43 Identities=30% Similarity=0.424 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHhccCC-----hhhhHHHHHhhhhhhhhcCChhhHHh
Q 011881 43 IPSLPDELSIQILARVP-----RIFYLNLRAVSRKWKATVTSPELFEV 85 (475)
Q Consensus 43 ~~~LP~dl~~~iL~~lp-----~~~l~~l~~vck~W~~l~~s~~~~~~ 85 (475)
|..|||||+.+||.++= ..+|.++.+|||.|......|++.+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 45799999999998754 47899999999999999999998764
No 73
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.22 E-value=4.5 Score=37.52 Aligned_cols=160 Identities=22% Similarity=0.252 Sum_probs=80.1
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCC-----CccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEe
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMS-----VGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFD 252 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p-----~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd 252 (475)
-++.+|+... ..+.++|+.+++++.+...+ ..+.+-.++--+|.||+---....... .....+++++
T Consensus 50 ~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~-~~~g~v~~~~ 121 (246)
T PF08450_consen 50 PDGRLYVADS-------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASG-IDPGSVYRID 121 (246)
T ss_dssp TTSEEEEEET-------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTC-GGSEEEEEEE
T ss_pred cCCEEEEEEc-------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccc-ccccceEEEC
Confidence 3788888764 24466799999999886552 223333333347888886422111010 0115799999
Q ss_pred CCCCCeEecC-CCCccccCCCCccccccccccceeeEEE-eCC-EEEEeccCCCCCceeccceEEEeCC--CCceEEcCC
Q 011881 253 PTTDAWSEVP-SMPFSRAQGLPNAFFADMLKPIATGMTS-YMG-RLCVPQSLYSWPFFVDVGGEIYDPD--TNSWVEMPI 327 (475)
Q Consensus 253 ~~t~~W~~~~-~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~yd~~--~~~W~~~~~ 327 (475)
+. .+.+.+. .+..| .+++. -++ .||+.--.. ...++||+. +.++.....
T Consensus 122 ~~-~~~~~~~~~~~~p------------------NGi~~s~dg~~lyv~ds~~-------~~i~~~~~~~~~~~~~~~~~ 175 (246)
T PF08450_consen 122 PD-GKVTVVADGLGFP------------------NGIAFSPDGKTLYVADSFN-------GRIWRFDLDADGGELSNRRV 175 (246)
T ss_dssp TT-SEEEEEEEEESSE------------------EEEEEETTSSEEEEEETTT-------TEEEEEEEETTTCCEEEEEE
T ss_pred CC-CeEEEEecCcccc------------------cceEECCcchheeeccccc-------ceeEEEeccccccceeeeee
Confidence 98 6555442 22221 23333 334 577742211 123677765 333432111
Q ss_pred --CCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 328 --GMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 328 --~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
..... .... -..++--+|.|||..- ..+.|.+||++...-..+.
T Consensus 176 ~~~~~~~-~g~p--DG~~vD~~G~l~va~~----~~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 176 FIDFPGG-PGYP--DGLAVDSDGNLWVADW----GGGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp EEE-SSS-SCEE--EEEEEBTTS-EEEEEE----TTTEEEEEETTSCEEEEEE
T ss_pred EEEcCCC-CcCC--CcceEcCCCCEEEEEc----CCCEEEEECCCccEEEEEc
Confidence 01110 0001 1112334789999832 1258999999966566553
No 74
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=93.89 E-value=4.6 Score=36.15 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=48.2
Q ss_pred CEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCC-CCCCccCCCeEEEEE--CCeEEEEcCCCCCCCCeEEEEeC
Q 011881 293 GRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGE-GWPARQAGTKLSVVL--DGELYAFDPSSSLNSAKIKVYDQ 369 (475)
Q Consensus 293 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~ 369 (475)
+++|+|-|. .-++||..+..+... ..+.. ++|.......++... ++++|++-| +..+.||.
T Consensus 63 ~~~yfFkg~---------~yw~~~~~~~~~~~P-k~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg------~~y~ry~~ 126 (194)
T cd00094 63 GKIYFFKGD---------KYWVYTGKNLEPGYP-KPISDLGFPPTVKQIDAALRWPDNGKTYFFKG------DKYWRYDE 126 (194)
T ss_pred CEEEEECCC---------EEEEEcCcccccCCC-cchhhcCCCCCCCCccEEEEEcCCCEEEEEeC------CEEEEEeC
Confidence 899998663 226777654222211 11111 222211112223333 689999987 57899998
Q ss_pred CCCcEEEcCC-cCc--cccCCCCCCCeEEEEeCCeEEEEeec
Q 011881 370 KEDTWKVVIG-KVP--IRDFADSESPYLLSAFHGKLHVLTKD 408 (475)
Q Consensus 370 ~~~~W~~v~~-~~p--~~~~~~~r~~~~~~~~~~~l~v~GG~ 408 (475)
.+++-..--+ .+. ...++.. ...++..-++++|+|-|.
T Consensus 127 ~~~~v~~~yP~~i~~~w~g~p~~-idaa~~~~~~~~yfF~g~ 167 (194)
T cd00094 127 KTQKMDPGYPKLIETDFPGVPDK-VDAAFRWLDGYYYFFKGD 167 (194)
T ss_pred CCccccCCCCcchhhcCCCcCCC-cceeEEeCCCcEEEEECC
Confidence 7665421100 000 0122221 222333334899999774
No 75
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.82 E-value=6 Score=37.33 Aligned_cols=163 Identities=17% Similarity=0.206 Sum_probs=88.4
Q ss_pred eeEEEeCCEEEEEcCCCC-----------------CCCcceEEEEeCCCCc----EEeCCCCCCccceeeeE---E---E
Q 011881 173 CAIGAVDGCLYVLGGFSR-----------------TSAMRCVRRYDPIANT----WNEATSMSVGRAYCKTG---I---L 225 (475)
Q Consensus 173 ~~~~~~~~~lyv~GG~~~-----------------~~~~~~~~~yd~~t~~----W~~~~~~p~~R~~~~~~---~---~ 225 (475)
-++..+++.|| |||+-. ....+.+..||...++ |++--. .++....-+ . +
T Consensus 40 NAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih--~~~~WaGEVSdIlYdP~ 116 (339)
T PF09910_consen 40 NAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIH--DKTKWAGEVSDILYDPY 116 (339)
T ss_pred eeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccC--CccccccchhheeeCCC
Confidence 34456677776 677621 1235678999998887 554322 222222211 1 3
Q ss_pred CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCC
Q 011881 226 NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWP 305 (475)
Q Consensus 226 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~ 305 (475)
+++|++.=+ ++ ...--++..|..+..=+.+..-|.+.- +...+-.+|-+ .+...
T Consensus 117 ~D~LLlAR~-----DG-h~nLGvy~ldr~~g~~~~L~~~ps~KG------------------~~~~D~a~F~i--~~~~~ 170 (339)
T PF09910_consen 117 EDRLLLARA-----DG-HANLGVYSLDRRTGKAEKLSSNPSLKG------------------TLVHDYACFGI--NNFHK 170 (339)
T ss_pred cCEEEEEec-----CC-cceeeeEEEcccCCceeeccCCCCcCc------------------eEeeeeEEEec--ccccc
Confidence 678888754 22 133568888888988888776665422 12222222211 11111
Q ss_pred ceeccceEEEeCCCCce--EEcCCCCC-CCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCC
Q 011881 306 FFVDVGGEIYDPDTNSW--VEMPIGMG-EGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 306 ~~~~~~~~~yd~~~~~W--~~~~~~~~-~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 372 (475)
.. .+.++||+.+++| +..+.... .+-+.-+...++++...+++|.|=+ ..+.+.||...
T Consensus 171 g~--~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~r------GGi~vgnP~~~ 232 (339)
T PF09910_consen 171 GV--SGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVR------GGIFVGNPYNG 232 (339)
T ss_pred CC--ceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEe------ccEEEeCCCCC
Confidence 11 2348999999999 54432111 1112222333446778888887721 24778888743
No 76
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.41 E-value=10 Score=38.58 Aligned_cols=181 Identities=10% Similarity=0.008 Sum_probs=94.0
Q ss_pred cceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CC-EEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCC
Q 011881 194 MRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-ND-KLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQG 271 (475)
Q Consensus 194 ~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~ 271 (475)
...++++|+.+++-+.+...+.. ....... ++ +|++..-. ++ ..+++++|..++..+.+..-+....
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~--~~~~~~SpDG~~la~~~~~----~g---~~~Iy~~d~~~~~~~~lt~~~~~~~-- 290 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGL--NGAPAWSPDGSKLAFVLSK----DG---NPEIYVMDLASRQLSRVTNHPAIDT-- 290 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCC--cCCeEECCCCCEEEEEEcc----CC---CceEEEEECCCCCeEEcccCCCCcC--
Confidence 35799999999988877654321 1112222 44 45543221 11 2589999999998887754321111
Q ss_pred CCccccccccccceeeEEEeCC-EEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECC-e
Q 011881 272 LPNAFFADMLKPIATGMTSYMG-RLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDG-E 349 (475)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~-~ 349 (475)
.....-++ .|++.....+. ...+.+|..+++++++.... ...... ...-++ .
T Consensus 291 --------------~~~~spDg~~i~f~s~~~g~-----~~iy~~d~~~g~~~~lt~~~------~~~~~~-~~Spdg~~ 344 (430)
T PRK00178 291 --------------EPFWGKDGRTLYFTSDRGGK-----PQIYKVNVNGGRAERVTFVG------NYNARP-RLSADGKT 344 (430)
T ss_pred --------------CeEECCCCCEEEEEECCCCC-----ceEEEEECCCCCEEEeecCC------CCccce-EECCCCCE
Confidence 11223344 45443222211 12377898888888765311 111111 223344 4
Q ss_pred EEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCC
Q 011881 350 LYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPR 421 (475)
Q Consensus 350 lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~ 421 (475)
|++...... ...++.+|+.++..+.+... .. . . .-...-+|+.+++....+....+...+..
T Consensus 345 i~~~~~~~~--~~~l~~~dl~tg~~~~lt~~-~~---~--~--~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 345 LVMVHRQDG--NFHVAAQDLQRGSVRILTDT-SL---D--E--SPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EEEEEccCC--ceEEEEEECCCCCEEEccCC-CC---C--C--CceECCCCCEEEEEEecCCceEEEEEECC
Confidence 444432221 24799999999988877421 10 0 0 11233477777776655444445555554
No 77
>smart00284 OLF Olfactomedin-like domains.
Probab=93.37 E-value=6.8 Score=36.52 Aligned_cols=196 Identities=16% Similarity=0.146 Sum_probs=102.8
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeC----CCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDP----IANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~----~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
++++|++.+.. ...+.++.|.- ....+.+.-.+|.+-.+.+.++++|.+|.--.. ...+.+||+.
T Consensus 34 ~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~---------s~~iiKydL~ 102 (255)
T smart00284 34 KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFN---------SHDICRFDLT 102 (255)
T ss_pred CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecC---------CccEEEEECC
Confidence 57899887653 12345666643 233343333567777788889999999985431 4689999999
Q ss_pred CCCeEecCCCCccccCC-CCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCC----CceEEcCCCC
Q 011881 255 TDAWSEVPSMPFSRAQG-LPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDT----NSWVEMPIGM 329 (475)
Q Consensus 255 t~~W~~~~~~p~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~----~~W~~~~~~~ 329 (475)
+++-.....+|.+.... .+-.+.. .. -.-.++-++-|+|+=........ +-.-..|+.+ .+|..--
T Consensus 103 t~~v~~~~~Lp~a~y~~~~~Y~~~~---~s-diDlAvDE~GLWvIYat~~~~g~--ivvSkLnp~tL~ve~tW~T~~--- 173 (255)
T smart00284 103 TETYQKEPLLNGAGYNNRFPYAWGG---FS-DIDLAVDENGLWVIYATEQNAGK--IVISKLNPATLTIENTWITTY--- 173 (255)
T ss_pred CCcEEEEEecCccccccccccccCC---Cc-cEEEEEcCCceEEEEeccCCCCC--EEEEeeCcccceEEEEEEcCC---
Confidence 98765444344321110 0000000 00 02334445556554211111000 1124566654 4576521
Q ss_pred CCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEE---eCCeEEEE
Q 011881 330 GEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSA---FHGKLHVL 405 (475)
Q Consensus 330 ~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~---~~~~l~v~ 405 (475)
+.+.++. +.++=|.||++-........-.+.||+.+++=..+ .+| ++.....+++.- .+.+||+.
T Consensus 174 ----~k~sa~n--aFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~--~i~---f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 174 ----NKRSASN--AFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHL--DIP---FENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred ----Ccccccc--cEEEeeEEEEEccCCCCCcEEEEEEECCCCcccee--eee---eccccccceeceeCCCCCeEEEE
Confidence 2333433 56677899999643333334678999998753322 233 222223334443 36778875
No 78
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.25 E-value=4.3 Score=37.68 Aligned_cols=147 Identities=24% Similarity=0.259 Sum_probs=82.0
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.||+..- ....++++|+.+.+-+.+.... ..+++.. ++++|+... ....++|+.++
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~-----------~~~~~~d~~~g 70 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS-----------GGIAVVDPDTG 70 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET-----------TCEEEEETTTT
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc-----------CceEEEecCCC
Confidence 678888742 2358999999998766542222 2234443 688988864 24466699999
Q ss_pred CeEecCCCC-----ccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceec-cceEEEeCCCCceEEcCCCCC
Q 011881 257 AWSEVPSMP-----FSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVD-VGGEIYDPDTNSWVEMPIGMG 330 (475)
Q Consensus 257 ~W~~~~~~p-----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~-~~~~~yd~~~~~W~~~~~~~~ 330 (475)
+++.+...+ ..+.+ -.++.-+|.||+-.-........+ -..+++++. ++.+.+...+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~N---------------D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~ 134 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPN---------------DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG 134 (246)
T ss_dssp EEEEEEEEETTCSCTEEEE---------------EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES
T ss_pred cEEEEeeccCCCcccCCCc---------------eEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc
Confidence 998875542 22222 334455788988432111111000 123678887 66666544221
Q ss_pred CCCCCccCCCeEEEEECC-eEEEEcCCCCCCCCeEEEEeCCCC
Q 011881 331 EGWPARQAGTKLSVVLDG-ELYAFDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 331 ~~~p~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~v~~yd~~~~ 372 (475)
.+. +.+...++ .||+..- ..+.|+.|++...
T Consensus 135 ----~pN---Gi~~s~dg~~lyv~ds----~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 135 ----FPN---GIAFSPDGKTLYVADS----FNGRIWRFDLDAD 166 (246)
T ss_dssp ----SEE---EEEEETTSSEEEEEET----TTTEEEEEEEETT
T ss_pred ----ccc---ceEECCcchheeeccc----ccceeEEEecccc
Confidence 111 11333445 5777643 2367999998643
No 79
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=92.89 E-value=11 Score=37.81 Aligned_cols=147 Identities=16% Similarity=0.032 Sum_probs=78.5
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEEECC-EEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCC
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGILND-KLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLP 273 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 273 (475)
..++++|+.+++-+.+...+....... ..-++ +|++..... ....++.+|..++..+.+.........
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~-~spDg~~l~~~~~~~-------~~~~i~~~d~~~~~~~~l~~~~~~~~~--- 282 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPA-FSPDGSKLAVSLSKD-------GNPDIYVMDLDGKQLTRLTNGPGIDTE--- 282 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceE-ECCCCCEEEEEECCC-------CCccEEEEECCCCCEEECCCCCCCCCC---
Confidence 579999999887776654433222211 11244 565543321 135789999999887777543211111
Q ss_pred ccccccccccceeeEEEeCCE-EEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEE
Q 011881 274 NAFFADMLKPIATGMTSYMGR-LCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYA 352 (475)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv 352 (475)
. ...-+++ |++.....+. ...+.+|..++.+..+..... .........+++.++
T Consensus 283 ------------~-~~s~dg~~l~~~s~~~g~-----~~iy~~d~~~~~~~~l~~~~~-------~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 283 ------------P-SWSPDGKSIAFTSDRGGS-----PQIYMMDADGGEVRRLTFRGG-------YNASPSWSPDGDLIA 337 (417)
T ss_pred ------------E-EECCCCCEEEEEECCCCC-----ceEEEEECCCCCEEEeecCCC-------CccCeEECCCCCEEE
Confidence 1 1122443 4433222211 123778888888877653111 111112334566655
Q ss_pred EcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 353 FDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 353 ~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
+..... ....++.+|+.+..++.+.
T Consensus 338 ~~~~~~-~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 338 FVHREG-GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred EEEccC-CceEEEEEeCCCCCeEEcc
Confidence 544322 2348999999987777664
No 80
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.02 E-value=11 Score=35.46 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=35.7
Q ss_pred EEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCC-CccceeeeEEE-C-CEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 181 CLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMS-VGRAYCKTGIL-N-DKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 181 ~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p-~~R~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
.+|+.++.+ ..+.+||+.+++-...-... .++ .++.. + ..+|+.++. ...+.+||..+.+
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~---------~~~v~~~d~~~~~ 64 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASD---------SDTIQVIDLATGE 64 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECC---------CCeEEEEECCCCc
Confidence 466666543 37888898877643321111 111 22222 3 357777653 2578899998876
Q ss_pred eEe
Q 011881 258 WSE 260 (475)
Q Consensus 258 W~~ 260 (475)
...
T Consensus 65 ~~~ 67 (300)
T TIGR03866 65 VIG 67 (300)
T ss_pred EEE
Confidence 543
No 81
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.01 E-value=6.6 Score=39.11 Aligned_cols=147 Identities=13% Similarity=0.112 Sum_probs=82.0
Q ss_pred CCE-EEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCC--cccee-eeEEECCEEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 179 DGC-LYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSV--GRAYC-KTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 179 ~~~-lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~--~R~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
+|. ..+++|. ..-++.||+.+.+-+++.++-. .+.-. -.+..++.+.++-|. ...+......
T Consensus 268 ~G~~~i~~s~r-----rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~---------~G~I~lLhak 333 (514)
T KOG2055|consen 268 NGHSVIFTSGR-----RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN---------NGHIHLLHAK 333 (514)
T ss_pred CCceEEEeccc-----ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc---------CceEEeehhh
Confidence 444 6667664 3468999999999988866431 12211 223445666667664 2467777777
Q ss_pred CCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCC
Q 011881 255 TDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWP 334 (475)
Q Consensus 255 t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p 334 (475)
|+.|-.--.++..... .....-...|++.||.. .++++|+.++.-...- +. .
T Consensus 334 T~eli~s~KieG~v~~---------------~~fsSdsk~l~~~~~~G--------eV~v~nl~~~~~~~rf--~D---~ 385 (514)
T KOG2055|consen 334 TKELITSFKIEGVVSD---------------FTFSSDSKELLASGGTG--------EVYVWNLRQNSCLHRF--VD---D 385 (514)
T ss_pred hhhhhheeeeccEEee---------------EEEecCCcEEEEEcCCc--------eEEEEecCCcceEEEE--ee---c
Confidence 8877543223322222 23333445677777643 2388899887432211 11 1
Q ss_pred CccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCC
Q 011881 335 ARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKE 371 (475)
Q Consensus 335 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~ 371 (475)
....|.+.+...++.++..|-. ..-|=+||-++
T Consensus 386 G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s 418 (514)
T KOG2055|consen 386 GSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNS 418 (514)
T ss_pred CccceeeeeecCCCceEEeccC----cceEEEeccch
Confidence 1334555455678886666642 24566777554
No 82
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=91.56 E-value=14 Score=36.97 Aligned_cols=151 Identities=10% Similarity=0.060 Sum_probs=82.2
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEE--ECCE-EEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGI--LNDK-LYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~--~~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
.-.+.+.+|.++ .-.++..|-.+|. .+.++...+.--..+. -+|. ..+++|. ..-++.||+++
T Consensus 224 ~~plllvaG~d~---~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r---------rky~ysyDle~ 289 (514)
T KOG2055|consen 224 TAPLLLVAGLDG---TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR---------RKYLYSYDLET 289 (514)
T ss_pred CCceEEEecCCC---cEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc---------ceEEEEeeccc
Confidence 345788888765 3467777777776 4444433332222222 2454 6666664 36789999999
Q ss_pred CCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCC
Q 011881 256 DAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPA 335 (475)
Q Consensus 256 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~ 335 (475)
.+-+++.++-.--.... -.=-+..++.+.++-|..++ + ......|+.|-. . +.. +.
T Consensus 290 ak~~k~~~~~g~e~~~~------------e~FeVShd~~fia~~G~~G~-----I--~lLhakT~eli~--s-~Ki--eG 345 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSM------------ERFEVSHDSNFIAIAGNNGH-----I--HLLHAKTKELIT--S-FKI--EG 345 (514)
T ss_pred cccccccCCCCcccchh------------heeEecCCCCeEEEcccCce-----E--Eeehhhhhhhhh--e-eee--cc
Confidence 99888866432111000 01123455566666664432 1 445566777742 1 111 11
Q ss_pred ccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 336 RQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 336 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
...... ....+.+|++.||. ..||++|+..+.
T Consensus 346 ~v~~~~-fsSdsk~l~~~~~~-----GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 346 VVSDFT-FSSDSKELLASGGT-----GEVYVWNLRQNS 377 (514)
T ss_pred EEeeEE-EecCCcEEEEEcCC-----ceEEEEecCCcc
Confidence 222211 12234557777774 479999999873
No 83
>PRK13684 Ycf48-like protein; Provisional
Probab=91.46 E-value=15 Score=36.00 Aligned_cols=176 Identities=11% Similarity=0.121 Sum_probs=82.0
Q ss_pred EEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCC-CCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeC
Q 011881 176 GAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSM-SVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDP 253 (475)
Q Consensus 176 ~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~-p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 253 (475)
...++..|+.|.. ..+++=+-.-.+|+++... ..+........+ ++.+|+.|.. ..+++=+-
T Consensus 96 ~~~~~~~~~~G~~------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~----------G~i~~S~D 159 (334)
T PRK13684 96 SFKGDEGWIVGQP------SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV----------GAIYRTTD 159 (334)
T ss_pred EEcCCcEEEeCCC------ceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc----------ceEEEECC
Confidence 3345556766521 2344433334589988532 122222233333 3456666542 23444444
Q ss_pred CCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEE---eCCCCceEEcCCCCC
Q 011881 254 TTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIY---DPDTNSWVEMPIGMG 330 (475)
Q Consensus 254 ~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~y---d~~~~~W~~~~~~~~ 330 (475)
.-.+|+.+...... .- ..+....+..|+.-| ..+..| |....+|+.+..+
T Consensus 160 gG~tW~~~~~~~~g-~~---------------~~i~~~~~g~~v~~g---------~~G~i~~s~~~gg~tW~~~~~~-- 212 (334)
T PRK13684 160 GGKNWEALVEDAAG-VV---------------RNLRRSPDGKYVAVS---------SRGNFYSTWEPGQTAWTPHQRN-- 212 (334)
T ss_pred CCCCceeCcCCCcc-eE---------------EEEEECCCCeEEEEe---------CCceEEEEcCCCCCeEEEeeCC--
Confidence 55689987543211 11 334444444444333 122333 3445679987652
Q ss_pred CCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEE--eCCCCcEEEcCCcCccccCCCCCCCeEEEEe-CCeEEEEee
Q 011881 331 EGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVY--DQKEDTWKVVIGKVPIRDFADSESPYLLSAF-HGKLHVLTK 407 (475)
Q Consensus 331 ~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~y--d~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~GG 407 (475)
....-.......++.++++|.. ....+ +-.-.+|+.+.. |.. ......++++.. ++.++++|.
T Consensus 213 ----~~~~l~~i~~~~~g~~~~vg~~------G~~~~~s~d~G~sW~~~~~--~~~--~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 213 ----SSRRLQSMGFQPDGNLWMLARG------GQIRFNDPDDLESWSKPII--PEI--TNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred ----CcccceeeeEcCCCCEEEEecC------CEEEEccCCCCCccccccC--Ccc--ccccceeeEEEcCCCCEEEEcC
Confidence 1112222133457889888742 22334 223458997632 210 011122334433 667887775
Q ss_pred c
Q 011881 408 D 408 (475)
Q Consensus 408 ~ 408 (475)
.
T Consensus 279 ~ 279 (334)
T PRK13684 279 N 279 (334)
T ss_pred C
Confidence 3
No 84
>PRK04922 tolB translocation protein TolB; Provisional
Probab=90.83 E-value=21 Score=36.42 Aligned_cols=183 Identities=10% Similarity=-0.023 Sum_probs=92.7
Q ss_pred cceEEEEeCCCCcEEeCCCCCCccceeeeEEECC-EEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCC
Q 011881 194 MRCVRRYDPIANTWNEATSMSVGRAYCKTGILND-KLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGL 272 (475)
Q Consensus 194 ~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 272 (475)
...++++|+.+++-+.+...+..-.. ....-++ +|++.... ++ ..+++++|+.++.-+++..-.....
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~~-~~~SpDG~~l~~~~s~----~g---~~~Iy~~d~~~g~~~~lt~~~~~~~--- 295 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGINGA-PSFSPDGRRLALTLSR----DG---NPEIYVMDLGSRQLTRLTNHFGIDT--- 295 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCccC-ceECCCCCEEEEEEeC----CC---CceEEEEECCCCCeEECccCCCCcc---
Confidence 45799999999888777655421111 1112244 55544321 11 2579999999988776643221111
Q ss_pred CccccccccccceeeEEEeCCE-EEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCe-E
Q 011881 273 PNAFFADMLKPIATGMTSYMGR-LCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGE-L 350 (475)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~-l 350 (475)
.....-+|+ |++.....+. ...+.+|..+++.+.+.... .... .....-+|+ |
T Consensus 296 -------------~~~~spDG~~l~f~sd~~g~-----~~iy~~dl~~g~~~~lt~~g------~~~~-~~~~SpDG~~I 350 (433)
T PRK04922 296 -------------EPTWAPDGKSIYFTSDRGGR-----PQIYRVAASGGSAERLTFQG------NYNA-RASVSPDGKKI 350 (433)
T ss_pred -------------ceEECCCCCEEEEEECCCCC-----ceEEEEECCCCCeEEeecCC------CCcc-CEEECCCCCEE
Confidence 112233444 4333222211 12367788888887765311 1111 112333444 5
Q ss_pred EEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCCC
Q 011881 351 YAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPRD 422 (475)
Q Consensus 351 yv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~~ 422 (475)
++..+.+ ....++++|+.+++.+.+... + ... .-...-+|+.+++.........+..+|+..
T Consensus 351 a~~~~~~--~~~~I~v~d~~~g~~~~Lt~~-~-----~~~--~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 351 AMVHGSG--GQYRIAVMDLSTGSVRTLTPG-S-----LDE--SPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred EEEECCC--CceeEEEEECCCCCeEECCCC-C-----CCC--CceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 4443322 224799999998888876421 1 000 112344666666665544444455555543
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.61 E-value=13 Score=37.20 Aligned_cols=144 Identities=19% Similarity=0.217 Sum_probs=76.1
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcE-EeCCCCCCccc-eeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTW-NEATSMSVGRA-YCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~p~~R~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
.+|+|+.+|+..+ .+-+||..++.- +.+- -.+++. .--....++.+++.|+- -..+..+|..+
T Consensus 78 ~DG~LlaaGD~sG-----~V~vfD~k~r~iLR~~~-ah~apv~~~~f~~~d~t~l~s~sD---------d~v~k~~d~s~ 142 (487)
T KOG0310|consen 78 SDGRLLAAGDESG-----HVKVFDMKSRVILRQLY-AHQAPVHVTKFSPQDNTMLVSGSD---------DKVVKYWDLST 142 (487)
T ss_pred cCCeEEEccCCcC-----cEEEeccccHHHHHHHh-hccCceeEEEecccCCeEEEecCC---------CceEEEEEcCC
Confidence 5799999997644 678899555221 1111 111111 11123468889999873 13445555555
Q ss_pred CCeE-ecCC-CCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCC-ceEEcCCCCCCC
Q 011881 256 DAWS-EVPS-MPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTN-SWVEMPIGMGEG 332 (475)
Q Consensus 256 ~~W~-~~~~-~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~~ 332 (475)
..-. .+.. --.-|+ .++...++.|.+-||+++. +-.||+.+. .|.. . +..+
T Consensus 143 a~v~~~l~~htDYVR~----------------g~~~~~~~hivvtGsYDg~-------vrl~DtR~~~~~v~--e-lnhg 196 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVRC----------------GDISPANDHIVVTGSYDGK-------VRLWDTRSLTSRVV--E-LNHG 196 (487)
T ss_pred cEEEEEecCCcceeEe----------------eccccCCCeEEEecCCCce-------EEEEEeccCCceeE--E-ecCC
Confidence 5421 1111 111122 2444567889999998864 367888877 4543 1 2222
Q ss_pred CCCccCCCeEEEEECCeEEE-EcCCCCCCCCeEEEEeCCCC
Q 011881 333 WPARQAGTKLSVVLDGELYA-FDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 333 ~p~~~~~~~~~~~~~~~lyv-~GG~~~~~~~~v~~yd~~~~ 372 (475)
.|-... ++.-+|.+++ .|| +.+.++|..++
T Consensus 197 ~pVe~v----l~lpsgs~iasAgG------n~vkVWDl~~G 227 (487)
T KOG0310|consen 197 CPVESV----LALPSGSLIASAGG------NSVKVWDLTTG 227 (487)
T ss_pred CceeeE----EEcCCCCEEEEcCC------CeEEEEEecCC
Confidence 232221 2233434444 465 57888887754
No 86
>PRK13684 Ycf48-like protein; Provisional
Probab=90.21 E-value=20 Score=35.19 Aligned_cols=173 Identities=18% Similarity=0.174 Sum_probs=84.4
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEE-EeCCCCCe
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEV-FDPTTDAW 258 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~-yd~~t~~W 258 (475)
+.+|+.|. ...+++=+-.-.+|+.+..... -.-+.+....+..|++.|. . ..++. .|....+|
T Consensus 143 ~~~~~~g~------~G~i~~S~DgG~tW~~~~~~~~-g~~~~i~~~~~g~~v~~g~----~-----G~i~~s~~~gg~tW 206 (334)
T PRK13684 143 GTAEMATN------VGAIYRTTDGGKNWEALVEDAA-GVVRNLRRSPDGKYVAVSS----R-----GNFYSTWEPGQTAW 206 (334)
T ss_pred Ccceeeec------cceEEEECCCCCCceeCcCCCc-ceEEEEEECCCCeEEEEeC----C-----ceEEEEcCCCCCeE
Confidence 44565553 1245555556678998864332 2333444444444444432 1 12222 24455679
Q ss_pred EecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEe-C-CCCceEEcCCCCCCCCCC
Q 011881 259 SEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYD-P-DTNSWVEMPIGMGEGWPA 335 (475)
Q Consensus 259 ~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd-~-~~~~W~~~~~~~~~~~p~ 335 (475)
+.+.. +..+.- .+++ .-++.++++|. .|...+. . .-.+|+.+..+.. .
T Consensus 207 ~~~~~-~~~~~l---------------~~i~~~~~g~~~~vg~---------~G~~~~~s~d~G~sW~~~~~~~~----~ 257 (334)
T PRK13684 207 TPHQR-NSSRRL---------------QSMGFQPDGNLWMLAR---------GGQIRFNDPDDLESWSKPIIPEI----T 257 (334)
T ss_pred EEeeC-CCcccc---------------eeeeEcCCCCEEEEec---------CCEEEEccCCCCCccccccCCcc----c
Confidence 98754 222221 3333 34677888764 2223442 2 2358997654211 1
Q ss_pred ccCCCeEEE-EECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEe-CCeEEEEee
Q 011881 336 RQAGTKLSV-VLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAF-HGKLHVLTK 407 (475)
Q Consensus 336 ~~~~~~~~~-~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~GG 407 (475)
...+...++ ..++.+|++|.. ..++.-.....+|+.+.... ..+ ...+.++.. +++.|++|.
T Consensus 258 ~~~~l~~v~~~~~~~~~~~G~~-----G~v~~S~d~G~tW~~~~~~~---~~~--~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 258 NGYGYLDLAYRTPGEIWAGGGN-----GTLLVSKDGGKTWEKDPVGE---EVP--SNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred cccceeeEEEcCCCCEEEEcCC-----CeEEEeCCCCCCCeECCcCC---CCC--cceEEEEEeCCCceEEECC
Confidence 111111122 236788888753 24444444557899874201 111 233445544 677777664
No 87
>PRK04792 tolB translocation protein TolB; Provisional
Probab=90.11 E-value=24 Score=36.12 Aligned_cols=141 Identities=15% Similarity=0.024 Sum_probs=72.3
Q ss_pred CeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCE-EEEeccCCCCCceeccceEEEeCCCCceEE
Q 011881 246 QSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGR-LCVPQSLYSWPFFVDVGGEIYDPDTNSWVE 324 (475)
Q Consensus 246 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~ 324 (475)
..++++|+.+++-+.+...+.... .....-+|+ |++....++. ...+.+|.++++.++
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~----------------~~~wSPDG~~La~~~~~~g~-----~~Iy~~dl~tg~~~~ 300 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGING----------------APRFSPDGKKLALVLSKDGQ-----PEIYVVDIATKALTR 300 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcC----------------CeeECCCCCEEEEEEeCCCC-----eEEEEEECCCCCeEE
Confidence 579999999887776655432111 111223343 5443222211 123788999998887
Q ss_pred cCCCCCCCCCCccCCCeEEEEECCe-EEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEE
Q 011881 325 MPIGMGEGWPARQAGTKLSVVLDGE-LYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLH 403 (475)
Q Consensus 325 ~~~~~~~~~p~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~ 403 (475)
+..... ... ......+++ |++..... ....++.+|.++++++++... ..........-+|+.+
T Consensus 301 lt~~~~------~~~-~p~wSpDG~~I~f~s~~~--g~~~Iy~~dl~~g~~~~Lt~~-------g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 301 ITRHRA------IDT-EPSWHPDGKSLIFTSERG--GKPQIYRVNLASGKVSRLTFE-------GEQNLGGSITPDGRSM 364 (448)
T ss_pred CccCCC------Ccc-ceEECCCCCEEEEEECCC--CCceEEEEECCCCCEEEEecC-------CCCCcCeeECCCCCEE
Confidence 764211 011 112233554 44443222 225899999999999887310 0011111223355555
Q ss_pred EEeecCCCCeeEEEecCCCC
Q 011881 404 VLTKDASRNISILRADPRDH 423 (475)
Q Consensus 404 v~GG~~~~~~~v~~~d~~~~ 423 (475)
++....+....+..+|+.+.
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred EEEEecCCceEEEEEECCCC
Confidence 55554444455666776543
No 88
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=90.05 E-value=3.8 Score=33.87 Aligned_cols=87 Identities=14% Similarity=0.067 Sum_probs=50.8
Q ss_pred EeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCC--CCCeEEEE
Q 011881 290 SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSL--NSAKIKVY 367 (475)
Q Consensus 290 ~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~--~~~~v~~y 367 (475)
.+||-+|-..-...... ....+||.++.+|+.++.| .. +.........+.++|+|-++.-.... ..-++|+.
T Consensus 3 cinGvly~~a~~~~~~~---~~IvsFDv~~E~f~~i~~P-~~--~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvL 76 (129)
T PF08268_consen 3 CINGVLYWLAWSEDSDN---NVIVSFDVRSEKFRFIKLP-ED--PYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVL 76 (129)
T ss_pred EECcEEEeEEEECCCCC---cEEEEEEcCCceEEEEEee-ee--eccccCccEEEEeCCeEEEEEecCCCCcceEEEEEe
Confidence 45666665443311100 2237999999999998763 11 12222233377899999887543322 12478877
Q ss_pred -eCCCCcEEEcCCcCc
Q 011881 368 -DQKEDTWKVVIGKVP 382 (475)
Q Consensus 368 -d~~~~~W~~v~~~~p 382 (475)
|.++.+|.+....+|
T Consensus 77 eD~~k~~Wsk~~~~lp 92 (129)
T PF08268_consen 77 EDYEKQEWSKKHIVLP 92 (129)
T ss_pred eccccceEEEEEEECC
Confidence 466788998643333
No 89
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=89.60 E-value=18 Score=33.82 Aligned_cols=196 Identities=18% Similarity=0.189 Sum_probs=106.2
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeC-----CCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEe
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDP-----IANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFD 252 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~-----~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd 252 (475)
.++++|++.+..+. .++.|.- ..++..+.-.+|.+-.+.+.++++|.+|---. ....+.+||
T Consensus 29 ~~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~---------~s~~Ivkyd 95 (250)
T PF02191_consen 29 DSEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY---------NSRNIVKYD 95 (250)
T ss_pred CCCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec---------CCceEEEEE
Confidence 46789999886543 5555533 23333444456677777788889999888643 257999999
Q ss_pred CCCCCeEecCCCCccccCC-CCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCC----CceEEcCC
Q 011881 253 PTTDAWSEVPSMPFSRAQG-LPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDT----NSWVEMPI 327 (475)
Q Consensus 253 ~~t~~W~~~~~~p~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~----~~W~~~~~ 327 (475)
+.++.=..-..+|.+.... .+-... ... -.-.++-++-|+|+-........ +-.-..|+++ .+|..--
T Consensus 96 L~t~~v~~~~~L~~A~~~n~~~y~~~--~~t--~iD~AvDE~GLWvIYat~~~~g~--ivvskld~~tL~v~~tw~T~~- 168 (250)
T PF02191_consen 96 LTTRSVVARRELPGAGYNNRFPYYWS--GYT--DIDFAVDENGLWVIYATEDNNGN--IVVSKLDPETLSVEQTWNTSY- 168 (250)
T ss_pred CcCCcEEEEEECCccccccccceecC--CCc--eEEEEEcCCCEEEEEecCCCCCc--EEEEeeCcccCceEEEEEecc-
Confidence 9998744222222221110 000000 000 02334445556665332221111 1124566654 4565421
Q ss_pred CCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEe---CCeEEE
Q 011881 328 GMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAF---HGKLHV 404 (475)
Q Consensus 328 ~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~---~~~l~v 404 (475)
+.+..+. +.++-|.||++.........-.+.||+.+++=..+. +| ++..-...++..+ +.+||+
T Consensus 169 ------~k~~~~n--aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~--i~---f~~~~~~~~~l~YNP~dk~LY~ 235 (250)
T PF02191_consen 169 ------PKRSAGN--AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVS--IP---FPNPYGNISMLSYNPRDKKLYA 235 (250)
T ss_pred ------Cchhhcc--eeeEeeEEEEEEECCCCCcEEEEEEECCCCceecee--ee---eccccCceEeeeECCCCCeEEE
Confidence 2333333 567779999998765544556789999988655432 33 2222233444443 678887
Q ss_pred Ee
Q 011881 405 LT 406 (475)
Q Consensus 405 ~G 406 (475)
.-
T Consensus 236 wd 237 (250)
T PF02191_consen 236 WD 237 (250)
T ss_pred EE
Confidence 64
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=89.53 E-value=19 Score=37.69 Aligned_cols=44 Identities=27% Similarity=0.467 Sum_probs=38.3
Q ss_pred CCCCCCCCCHHHHHHHhccCChhhhHHHHHhhhhhhhhcCChhh
Q 011881 39 GLRLIPSLPDELSIQILARVPRIFYLNLRAVSRKWKATVTSPEL 82 (475)
Q Consensus 39 ~~~~~~~LP~dl~~~iL~~lp~~~l~~l~~vck~W~~l~~s~~~ 82 (475)
+...+..||.|+...||..|+...++.++.||+.|+.+......
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~ 147 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKV 147 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccch
Confidence 34567789999999999999999999999999999999876544
No 91
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.41 E-value=31 Score=36.25 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=67.0
Q ss_pred eEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCCc--------cceeeeEEECCEEEEEeceecCCCCcc
Q 011881 174 AIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSVG--------RAYCKTGILNDKLYVVGGVSRARGGLT 243 (475)
Q Consensus 174 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~--------R~~~~~~~~~~~iyv~GG~~~~~~~~~ 243 (475)
+.++.++.||+... ...++.+|..|.+ |+.-...+.. ......++.+++||+...
T Consensus 64 tPvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~--------- 128 (527)
T TIGR03075 64 QPLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL--------- 128 (527)
T ss_pred CCEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC---------
Confidence 44567999998653 2368899988765 8764432211 112234567889887432
Q ss_pred cCCeEEEEeCCCCC--eEecC-CCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCC
Q 011881 244 PLQSAEVFDPTTDA--WSEVP-SMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTN 320 (475)
Q Consensus 244 ~~~~~~~yd~~t~~--W~~~~-~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 320 (475)
...+..+|.+|.+ |+.-. ..... .. +..+-++.+++||+-....... .+-....||.+++
T Consensus 129 -dg~l~ALDa~TGk~~W~~~~~~~~~~-~~-------------~tssP~v~~g~Vivg~~~~~~~--~~G~v~AlD~~TG 191 (527)
T TIGR03075 129 -DARLVALDAKTGKVVWSKKNGDYKAG-YT-------------ITAAPLVVKGKVITGISGGEFG--VRGYVTAYDAKTG 191 (527)
T ss_pred -CCEEEEEECCCCCEEeeccccccccc-cc-------------ccCCcEEECCEEEEeecccccC--CCcEEEEEECCCC
Confidence 2478999998876 87532 11110 11 0033456788888742211100 0012368898887
Q ss_pred c--eEE
Q 011881 321 S--WVE 324 (475)
Q Consensus 321 ~--W~~ 324 (475)
+ |+.
T Consensus 192 ~~lW~~ 197 (527)
T TIGR03075 192 KLVWRR 197 (527)
T ss_pred ceeEec
Confidence 5 764
No 92
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.37 E-value=2.8 Score=39.16 Aligned_cols=106 Identities=19% Similarity=0.140 Sum_probs=68.3
Q ss_pred ccEEEEEEeecCCceeeEEecCCCCceeeCCCCCCCcchhhhcccccccceeeccceeeeeEeeecccCCCCCCCCCccc
Q 011881 93 EEWLYILTKVSDDRLLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWNDTLPQMPFCG 172 (475)
Q Consensus 93 ~~~lyv~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~pr~~ 172 (475)
++.||.-.|..+. ..+..||+.+++-....+++.. ..+
T Consensus 55 ~g~LyESTG~yG~-S~l~~~d~~tg~~~~~~~l~~~-----------------------------------------~Fg 92 (264)
T PF05096_consen 55 DGTLYESTGLYGQ-SSLRKVDLETGKVLQSVPLPPR-----------------------------------------YFG 92 (264)
T ss_dssp TTEEEEEECSTTE-EEEEEEETTTSSEEEEEE-TTT-------------------------------------------E
T ss_pred CCEEEEeCCCCCc-EEEEEEECCCCcEEEEEECCcc-----------------------------------------ccc
Confidence 4566665554433 3678899998876544444432 345
Q ss_pred eeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEe
Q 011881 173 CAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFD 252 (475)
Q Consensus 173 ~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd 252 (475)
-+++.++++||..==. ....++||+.+ .+.+...+.+.-+...+..+..||+--| .+.++..|
T Consensus 93 EGit~~~d~l~qLTWk-----~~~~f~yd~~t--l~~~~~~~y~~EGWGLt~dg~~Li~SDG----------S~~L~~~d 155 (264)
T PF05096_consen 93 EGITILGDKLYQLTWK-----EGTGFVYDPNT--LKKIGTFPYPGEGWGLTSDGKRLIMSDG----------SSRLYFLD 155 (264)
T ss_dssp EEEEEETTEEEEEESS-----SSEEEEEETTT--TEEEEEEE-SSS--EEEECSSCEEEE-S----------SSEEEEE-
T ss_pred eeEEEECCEEEEEEec-----CCeEEEEcccc--ceEEEEEecCCcceEEEcCCCEEEEECC----------ccceEEEC
Confidence 6788899999988422 34789999986 4555555666678888888888998877 36899999
Q ss_pred CCCCC
Q 011881 253 PTTDA 257 (475)
Q Consensus 253 ~~t~~ 257 (475)
|++-+
T Consensus 156 P~~f~ 160 (264)
T PF05096_consen 156 PETFK 160 (264)
T ss_dssp TTT-S
T ss_pred Ccccc
Confidence 98643
No 93
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=88.67 E-value=21 Score=33.43 Aligned_cols=62 Identities=16% Similarity=0.027 Sum_probs=35.2
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEe-CCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNE-ATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
+..+|+.++. .+.+.+||..+.+... ++....+ ..++.. ++.+|+.++. ...+.+||+.+
T Consensus 42 g~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~g~~l~~~~~~---------~~~l~~~d~~~ 104 (300)
T TIGR03866 42 GKLLYVCASD-----SDTIQVIDLATGEVIGTLPSGPDP---ELFALHPNGKILYIANED---------DNLVTVIDIET 104 (300)
T ss_pred CCEEEEEECC-----CCeEEEEECCCCcEEEeccCCCCc---cEEEECCCCCEEEEEcCC---------CCeEEEEECCC
Confidence 3457777653 2468889998877654 2221111 122222 3456666542 24788999987
Q ss_pred CC
Q 011881 256 DA 257 (475)
Q Consensus 256 ~~ 257 (475)
.+
T Consensus 105 ~~ 106 (300)
T TIGR03866 105 RK 106 (300)
T ss_pred Ce
Confidence 54
No 94
>PRK04043 tolB translocation protein TolB; Provisional
Probab=88.64 E-value=30 Score=35.14 Aligned_cols=182 Identities=9% Similarity=0.044 Sum_probs=96.7
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEEECC-EEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCC
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGILND-KLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLP 273 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 273 (475)
.++|++|+.+++=+.+...+.. .......-++ +|.+.-.. + ...+++.+|..++.++++...+..-.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~----~---g~~~Iy~~dl~~g~~~~LT~~~~~d~---- 280 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAP----K---GQPDIYLYDTNTKTLTQITNYPGIDV---- 280 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEcc----C---CCcEEEEEECCCCcEEEcccCCCccC----
Confidence 4899999999887777653221 1111122244 55554332 1 13689999999999998865543111
Q ss_pred ccccccccccceeeEEEeCC-EEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEE
Q 011881 274 NAFFADMLKPIATGMTSYMG-RLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYA 352 (475)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv 352 (475)
.....-+| +||+.....+. ...+++|..+++.+++... .. . . . ...-+|+..+
T Consensus 281 ------------~p~~SPDG~~I~F~Sdr~g~-----~~Iy~~dl~~g~~~rlt~~-g~----~--~-~-~~SPDG~~Ia 334 (419)
T PRK04043 281 ------------NGNFVEDDKRIVFVSDRLGY-----PNIFMKKLNSGSVEQVVFH-GK----N--N-S-SVSTYKNYIV 334 (419)
T ss_pred ------------ccEECCCCCEEEEEECCCCC-----ceEEEEECCCCCeEeCccC-CC----c--C-c-eECCCCCEEE
Confidence 11223334 56654432221 1237889999888776541 10 1 1 1 2334555433
Q ss_pred EcCCCC-C----CCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCCC
Q 011881 353 FDPSSS-L----NSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPRD 422 (475)
Q Consensus 353 ~GG~~~-~----~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~~ 422 (475)
+-.... . ....++.+|+++..++.+... . ....-...-+|+.+++-...+....+..+++..
T Consensus 335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~-------~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 335 YSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-G-------VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-C-------CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 322211 1 225899999999999888531 1 111112234666555554444444455555554
No 95
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.31 E-value=14 Score=38.86 Aligned_cols=127 Identities=17% Similarity=0.241 Sum_probs=69.1
Q ss_pred eeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCC--eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEe
Q 011881 221 KTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA--WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVP 298 (475)
Q Consensus 221 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~ 298 (475)
+-++.+++||+... ...++.+|..|.+ |+.-...+......... + .+..+.++.+++||+.
T Consensus 64 tPvv~~g~vyv~s~----------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~----~---~~~rg~av~~~~v~v~ 126 (527)
T TIGR03075 64 QPLVVDGVMYVTTS----------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCC----D---VVNRGVALYDGKVFFG 126 (527)
T ss_pred CCEEECCEEEEECC----------CCcEEEEECCCCceeeEecCCCCccccccccc----c---cccccceEECCEEEEE
Confidence 45567999999654 2468899988765 88654332111000000 0 0003456778888873
Q ss_pred ccCCCCCceeccceEEEeCCCCc--eEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCC-CCCCCCeEEEEeCCCCc--
Q 011881 299 QSLYSWPFFVDVGGEIYDPDTNS--WVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPS-SSLNSAKIKVYDQKEDT-- 373 (475)
Q Consensus 299 GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~-~~~~~~~v~~yd~~~~~-- 373 (475)
.. + -...++|.++++ |+.-...... .....++-++.+++||+-... .......+..||.++.+
T Consensus 127 t~-d-------g~l~ALDa~TGk~~W~~~~~~~~~----~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 127 TL-D-------ARLVALDAKTGKVVWSKKNGDYKA----GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred cC-C-------CEEEEEECCCCCEEeecccccccc----cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCcee
Confidence 31 1 123789998876 8753221111 111112246778888775321 11123589999998875
Q ss_pred EEE
Q 011881 374 WKV 376 (475)
Q Consensus 374 W~~ 376 (475)
|+.
T Consensus 195 W~~ 197 (527)
T TIGR03075 195 WRR 197 (527)
T ss_pred Eec
Confidence 774
No 96
>PRK04792 tolB translocation protein TolB; Provisional
Probab=87.29 E-value=38 Score=34.75 Aligned_cols=149 Identities=13% Similarity=0.005 Sum_probs=78.9
Q ss_pred cceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCC
Q 011881 194 MRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLP 273 (475)
Q Consensus 194 ~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 273 (475)
...++++|+.+.+-+.+...+..-......--+.+|++.... ++ ...++.+|..+++.+++..-.....
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~----~g---~~~Iy~~dl~tg~~~~lt~~~~~~~---- 309 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSK----DG---QPEIYVVDIATKALTRITRHRAIDT---- 309 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeC----CC---CeEEEEEECCCCCeEECccCCCCcc----
Confidence 357999999988877776554221111111123456554322 11 3579999999998887754321111
Q ss_pred ccccccccccceeeEEEeCCE-EEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEE
Q 011881 274 NAFFADMLKPIATGMTSYMGR-LCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYA 352 (475)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv 352 (475)
.....-+++ |++.....+. ...+.+|+.+++++.+..... .... . ...-+|+.++
T Consensus 310 ------------~p~wSpDG~~I~f~s~~~g~-----~~Iy~~dl~~g~~~~Lt~~g~-----~~~~-~-~~SpDG~~l~ 365 (448)
T PRK04792 310 ------------EPSWHPDGKSLIFTSERGGK-----PQIYRVNLASGKVSRLTFEGE-----QNLG-G-SITPDGRSMI 365 (448)
T ss_pred ------------ceEECCCCCEEEEEECCCCC-----ceEEEEECCCCCEEEEecCCC-----CCcC-e-eECCCCCEEE
Confidence 112233444 4443222211 223788999999988752111 1111 1 2334554444
Q ss_pred EcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 353 FDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 353 ~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
+..... ....++.+|+.+.+.+.+.
T Consensus 366 ~~~~~~-g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 366 MVNRTN-GKFNIARQDLETGAMQVLT 390 (448)
T ss_pred EEEecC-CceEEEEEECCCCCeEEcc
Confidence 432221 2347999999998887764
No 97
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=86.43 E-value=39 Score=37.13 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=25.1
Q ss_pred eeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCC--eEecCCC
Q 011881 220 CKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA--WSEVPSM 264 (475)
Q Consensus 220 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~ 264 (475)
.+-++++++||+... .+.++.+|..|++ |+.-+..
T Consensus 188 ~TPlvvgg~lYv~t~----------~~~V~ALDa~TGk~lW~~d~~~ 224 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP----------HNKVIALDAATGKEKWKFDPKL 224 (764)
T ss_pred cCCEEECCEEEEECC----------CCeEEEEECCCCcEEEEEcCCC
Confidence 455678999999754 3578888888765 8865443
No 98
>PTZ00421 coronin; Provisional
Probab=86.18 E-value=46 Score=34.62 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=52.4
Q ss_pred CEEEEEeceecCCCCcccCCeEEEEeCCCCCeEe-cCCCCccccCCCCccccccccccceeeE-EEeCCEEEEeccCCCC
Q 011881 227 DKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSE-VPSMPFSRAQGLPNAFFADMLKPIATGM-TSYMGRLCVPQSLYSW 304 (475)
Q Consensus 227 ~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~iyv~GG~~~~ 304 (475)
+.+++.||.+ ..+.+||..+.+-.. +....... .++ ...++.+.+.|+.++
T Consensus 138 ~~iLaSgs~D---------gtVrIWDl~tg~~~~~l~~h~~~V-----------------~sla~spdG~lLatgs~Dg- 190 (493)
T PTZ00421 138 MNVLASAGAD---------MVVNVWDVERGKAVEVIKCHSDQI-----------------TSLEWNLDGSLLCTTSKDK- 190 (493)
T ss_pred CCEEEEEeCC---------CEEEEEECCCCeEEEEEcCCCCce-----------------EEEEEECCCCEEEEecCCC-
Confidence 4577777642 578899998764221 11111000 222 234677777776553
Q ss_pred CceeccceEEEeCCCCceE-EcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCC
Q 011881 305 PFFVDVGGEIYDPDTNSWV-EMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 305 ~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 372 (475)
...+||+.+++=. .+.... .... .......++..++..|.+....+.+.+||+.+.
T Consensus 191 ------~IrIwD~rsg~~v~tl~~H~-----~~~~-~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 191 ------KLNIIDPRDGTIVSSVEAHA-----SAKS-QRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred ------EEEEEECCCCcEEEEEecCC-----CCcc-eEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 2378999876522 222100 0000 011122233344444433333468999998653
No 99
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=86.02 E-value=46 Score=34.53 Aligned_cols=74 Identities=14% Similarity=0.147 Sum_probs=45.6
Q ss_pred eeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCC----cc-ceeeeEEEC-CEEEEEeceecCCCCccc
Q 011881 173 CAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSV----GR-AYCKTGILN-DKLYVVGGVSRARGGLTP 244 (475)
Q Consensus 173 ~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~----~R-~~~~~~~~~-~~iyv~GG~~~~~~~~~~ 244 (475)
.+.++.++.||+.... ..++.+|..+.+ |+.-...+. +. .....++.+ ++||+...
T Consensus 55 ~sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~---------- 118 (488)
T cd00216 55 GTPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF---------- 118 (488)
T ss_pred cCCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC----------
Confidence 3446779999987532 478899988765 876432221 10 111234456 88887543
Q ss_pred CCeEEEEeCCCCC--eEecC
Q 011881 245 LQSAEVFDPTTDA--WSEVP 262 (475)
Q Consensus 245 ~~~~~~yd~~t~~--W~~~~ 262 (475)
...+..+|.+|.+ |+.-.
T Consensus 119 ~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 119 DGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCeEEEEECCCCCEeeeecC
Confidence 2578999998765 88643
No 100
>smart00284 OLF Olfactomedin-like domains.
Probab=85.84 E-value=30 Score=32.28 Aligned_cols=160 Identities=19% Similarity=0.177 Sum_probs=85.6
Q ss_pred ccceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCc------------cceeeeEEECCEEEEEeceec
Q 011881 170 FCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVG------------RAYCKTGILNDKLYVVGGVSR 237 (475)
Q Consensus 170 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~------------R~~~~~~~~~~~iyv~GG~~~ 237 (475)
-.+.+.++.+|.||.--. ....+.+||+.+++-.....+|.+ -...-.++-.+-|+|+=....
T Consensus 74 ~~GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~ 148 (255)
T smart00284 74 GQGTGVVVYNGSLYFNKF-----NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQ 148 (255)
T ss_pred cccccEEEECceEEEEec-----CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccC
Confidence 456677889999998532 246899999999886433333322 112334555666777644321
Q ss_pred CCCCcccCCeEEEEeCCCC----CeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceE
Q 011881 238 ARGGLTPLQSAEVFDPTTD----AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGE 313 (475)
Q Consensus 238 ~~~~~~~~~~~~~yd~~t~----~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 313 (475)
+. + .-.+-..||.+- +|.. +.+.+.. ..+.++-|.||+.-........ -..
T Consensus 149 ~~-g---~ivvSkLnp~tL~ve~tW~T--~~~k~sa----------------~naFmvCGvLY~~~s~~~~~~~---I~y 203 (255)
T smart00284 149 NA-G---KIVISKLNPATLTIENTWIT--TYNKRSA----------------SNAFMICGILYVTRSLGSKGEK---VFY 203 (255)
T ss_pred CC-C---CEEEEeeCcccceEEEEEEc--CCCcccc----------------cccEEEeeEEEEEccCCCCCcE---EEE
Confidence 11 1 123456677653 4665 3333222 3345556899997532221111 127
Q ss_pred EEeCCCCceEEcCCCCCCCCCCccCCCeEEEEE---CCeEEEEcCCCCCCCCeEEEEeCC
Q 011881 314 IYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVL---DGELYAFDPSSSLNSAKIKVYDQK 370 (475)
Q Consensus 314 ~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~v~~yd~~ 370 (475)
+||+.+++=..+.-+ ++..... .++.-+ +.+||+.. ...+..||+.
T Consensus 204 ayDt~t~~~~~~~i~----f~n~y~~-~s~l~YNP~d~~LY~wd------ng~~l~Y~v~ 252 (255)
T smart00284 204 AYDTNTGKEGHLDIP----FENMYEY-ISMLDYNPNDRKLYAWN------NGHLVHYDIA 252 (255)
T ss_pred EEECCCCccceeeee----ecccccc-ceeceeCCCCCeEEEEe------CCeEEEEEEE
Confidence 899998764433221 2323222 223333 57788874 2356666653
No 101
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=85.66 E-value=35 Score=32.85 Aligned_cols=176 Identities=20% Similarity=0.228 Sum_probs=75.8
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEE-ECCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGI-LNDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
-++.++++|.. ..+++=.-.-.+|+.+..-...- -..+.. -++++++++.. + +-....|+...
T Consensus 113 ~~~~~~l~~~~------G~iy~T~DgG~tW~~~~~~~~gs-~~~~~r~~dG~~vavs~~-----G----~~~~s~~~G~~ 176 (302)
T PF14870_consen 113 GDGSAELAGDR------GAIYRTTDGGKTWQAVVSETSGS-INDITRSSDGRYVAVSSR-----G----NFYSSWDPGQT 176 (302)
T ss_dssp ETTEEEEEETT--------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETT-----S----SEEEEE-TT-S
T ss_pred CCCcEEEEcCC------CcEEEeCCCCCCeeEcccCCcce-eEeEEECCCCcEEEEECc-----c----cEEEEecCCCc
Confidence 35566666532 34555555667899875432221 112222 35676666542 1 34456788888
Q ss_pred CeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceE-EEe---CCCCceEEcCCCCCCC
Q 011881 257 AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGE-IYD---PDTNSWVEMPIGMGEG 332 (475)
Q Consensus 257 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-~yd---~~~~~W~~~~~~~~~~ 332 (475)
.|++..-....|-. .....-++.|++.. .|+. .+. -...+|++...+.
T Consensus 177 ~w~~~~r~~~~riq---------------~~gf~~~~~lw~~~----------~Gg~~~~s~~~~~~~~w~~~~~~~--- 228 (302)
T PF14870_consen 177 TWQPHNRNSSRRIQ---------------SMGFSPDGNLWMLA----------RGGQIQFSDDPDDGETWSEPIIPI--- 228 (302)
T ss_dssp S-EEEE--SSS-EE---------------EEEE-TTS-EEEEE----------TTTEEEEEE-TTEEEEE---B-TT---
T ss_pred cceEEccCccceeh---------------hceecCCCCEEEEe----------CCcEEEEccCCCCccccccccCCc---
Confidence 99987543333332 22234467777653 2222 232 2455787732211
Q ss_pred CCCccCCCeEEEE-ECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEe-CCeEEEEeec
Q 011881 333 WPARQAGTKLSVV-LDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAF-HGKLHVLTKD 408 (475)
Q Consensus 333 ~p~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~GG~ 408 (475)
+....+...++. -++.+++.||.. .+++=.-.-++|++...-. +.+-..+.++.. .++-+|+|-.
T Consensus 229 -~~~~~~~ld~a~~~~~~~wa~gg~G-----~l~~S~DgGktW~~~~~~~-----~~~~n~~~i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 229 -KTNGYGILDLAYRPPNEIWAVGGSG-----TLLVSTDGGKTWQKDRVGE-----NVPSNLYRIVFVNPDKGFVLGQD 295 (302)
T ss_dssp -SS--S-EEEEEESSSS-EEEEESTT------EEEESSTTSS-EE-GGGT-----TSSS---EEEEEETTEEEEE-ST
T ss_pred -ccCceeeEEEEecCCCCEEEEeCCc-----cEEEeCCCCccceECcccc-----CCCCceEEEEEcCCCceEEECCC
Confidence 122232221232 358899999843 4555555667899974311 122223445544 5688998843
No 102
>PRK04922 tolB translocation protein TolB; Provisional
Probab=85.22 E-value=46 Score=33.84 Aligned_cols=141 Identities=11% Similarity=0.018 Sum_probs=70.8
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEEECCE-EEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCC
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGILNDK-LYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLP 273 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 273 (475)
.+++++|+.+++-+.+..-...-... ...-+++ |++.... .+ ...++.+|..+++.+.+..-. ....
T Consensus 272 ~~Iy~~d~~~g~~~~lt~~~~~~~~~-~~spDG~~l~f~sd~----~g---~~~iy~~dl~~g~~~~lt~~g--~~~~-- 339 (433)
T PRK04922 272 PEIYVMDLGSRQLTRLTNHFGIDTEP-TWAPDGKSIYFTSDR----GG---RPQIYRVAASGGSAERLTFQG--NYNA-- 339 (433)
T ss_pred ceEEEEECCCCCeEECccCCCCccce-EECCCCCEEEEEECC----CC---CceEEEEECCCCCeEEeecCC--CCcc--
Confidence 58999999998877764332111111 1112444 4443221 11 247889999888887764211 1110
Q ss_pred ccccccccccceeeEEEeCC-EEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEE
Q 011881 274 NAFFADMLKPIATGMTSYMG-RLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYA 352 (475)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv 352 (475)
.....-+| .|++..+..+ . ....++|+.+++...+..... . .. .....+|+.++
T Consensus 340 ------------~~~~SpDG~~Ia~~~~~~~-~----~~I~v~d~~~g~~~~Lt~~~~-----~-~~--p~~spdG~~i~ 394 (433)
T PRK04922 340 ------------RASVSPDGKKIAMVHGSGG-Q----YRIAVMDLSTGSVRTLTPGSL-----D-ES--PSFAPNGSMVL 394 (433)
T ss_pred ------------CEEECCCCCEEEEEECCCC-c----eeEEEEECCCCCeEECCCCCC-----C-CC--ceECCCCCEEE
Confidence 11222344 4444332111 1 123789999888887654211 0 11 13345666555
Q ss_pred EcCCCCCCCCeEEEEeCCCCc
Q 011881 353 FDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 353 ~GG~~~~~~~~v~~yd~~~~~ 373 (475)
+..... ....++.+|.+...
T Consensus 395 ~~s~~~-g~~~L~~~~~~g~~ 414 (433)
T PRK04922 395 YATREG-GRGVLAAVSTDGRV 414 (433)
T ss_pred EEEecC-CceEEEEEECCCCc
Confidence 533221 23578888886543
No 103
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=84.30 E-value=36 Score=31.80 Aligned_cols=160 Identities=21% Similarity=0.238 Sum_probs=90.6
Q ss_pred ccceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEE---eCCCCCC---------ccceeeeEEECCEEEEEeceec
Q 011881 170 FCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWN---EATSMSV---------GRAYCKTGILNDKLYVVGGVSR 237 (475)
Q Consensus 170 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~---~~~~~p~---------~R~~~~~~~~~~~iyv~GG~~~ 237 (475)
-.+.+.++.+|.+|.--. .++.+.+||+.+++-. .++.... +-...-.++-.+-|+|+-....
T Consensus 69 ~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~ 143 (250)
T PF02191_consen 69 WQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATED 143 (250)
T ss_pred eccCCeEEECCcEEEEec-----CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCC
Confidence 456667788888887532 3679999999998744 4543211 1122345556677888865432
Q ss_pred CCCCcccCCeEEEEeCCC----CCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceE
Q 011881 238 ARGGLTPLQSAEVFDPTT----DAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGE 313 (475)
Q Consensus 238 ~~~~~~~~~~~~~yd~~t----~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 313 (475)
..+ .-.+-..||.+ .+|.. ..+.+..+ .+.++-|.||++...+..... -..
T Consensus 144 ~~g----~ivvskld~~tL~v~~tw~T--~~~k~~~~----------------naFmvCGvLY~~~s~~~~~~~---I~y 198 (250)
T PF02191_consen 144 NNG----NIVVSKLDPETLSVEQTWNT--SYPKRSAG----------------NAFMVCGVLYATDSYDTRDTE---IFY 198 (250)
T ss_pred CCC----cEEEEeeCcccCceEEEEEe--ccCchhhc----------------ceeeEeeEEEEEEECCCCCcE---EEE
Confidence 211 13445567665 34764 34433332 345566899998765543211 127
Q ss_pred EEeCCCCceEEcCCCCCCCCCCccCCCeEEEEE---CCeEEEEcCCCCCCCCeEEEEeCC
Q 011881 314 IYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVL---DGELYAFDPSSSLNSAKIKVYDQK 370 (475)
Q Consensus 314 ~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~v~~yd~~ 370 (475)
+||+.+++=..+.-+. +.+....+ +..+ +.+||+..- .....|++.
T Consensus 199 afDt~t~~~~~~~i~f----~~~~~~~~-~l~YNP~dk~LY~wd~------G~~v~Y~v~ 247 (250)
T PF02191_consen 199 AFDTYTGKEEDVSIPF----PNPYGNIS-MLSYNPRDKKLYAWDN------GYQVTYDVR 247 (250)
T ss_pred EEECCCCceeceeeee----ccccCceE-eeeECCCCCeEEEEEC------CeEEEEEEE
Confidence 8999988766544322 22322222 4443 577888842 356666653
No 104
>PRK05137 tolB translocation protein TolB; Provisional
Probab=84.29 E-value=51 Score=33.54 Aligned_cols=147 Identities=12% Similarity=0.027 Sum_probs=75.1
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEEECC-EEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCC
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGILND-KLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLP 273 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 273 (475)
..++++|+.+.+.+.+...+..-.... ..-++ +|++.... ++ ..+++.+|..++.-+.+...+....
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~-~SPDG~~la~~~~~----~g---~~~Iy~~d~~~~~~~~Lt~~~~~~~---- 293 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPR-FSPDGRKVVMSLSQ----GG---NTDIYTMDLRSGTTTRLTDSPAIDT---- 293 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcE-ECCCCCEEEEEEec----CC---CceEEEEECCCCceEEccCCCCccC----
Confidence 689999999998888765543222111 12244 45444322 11 3578999999988777654331111
Q ss_pred ccccccccccceeeEEEeCCE-EEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEE
Q 011881 274 NAFFADMLKPIATGMTSYMGR-LCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYA 352 (475)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv 352 (475)
.....-+|+ |++.....+. ...+++|..+.+.+.+.... ...... ...-+|+.++
T Consensus 294 ------------~~~~spDG~~i~f~s~~~g~-----~~Iy~~d~~g~~~~~lt~~~------~~~~~~-~~SpdG~~ia 349 (435)
T PRK05137 294 ------------SPSYSPDGSQIVFESDRSGS-----PQLYVMNADGSNPRRISFGG------GRYSTP-VWSPRGDLIA 349 (435)
T ss_pred ------------ceeEcCCCCEEEEEECCCCC-----CeEEEEECCCCCeEEeecCC------CcccCe-EECCCCCEEE
Confidence 112233444 3332211111 12377888877777665311 111111 2334554433
Q ss_pred EcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 353 FDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 353 ~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
+..... ....++.+|+++...+.+.
T Consensus 350 ~~~~~~-~~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 350 FTKQGG-GQFSIGVMKPDGSGERILT 374 (435)
T ss_pred EEEcCC-CceEEEEEECCCCceEecc
Confidence 322111 1247899999877666553
No 105
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=83.71 E-value=10 Score=31.18 Aligned_cols=65 Identities=18% Similarity=0.330 Sum_probs=45.3
Q ss_pred EEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCC
Q 011881 344 VVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASR 411 (475)
Q Consensus 344 ~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~ 411 (475)
+.+||.||-..-........|..||.++.+|+.+..+ ...........++.++|+|-++.-....
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P---~~~~~~~~~~~L~~~~G~L~~v~~~~~~ 66 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLP---EDPYSSDCSSTLIEYKGKLALVSYNDQG 66 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEee---eeeccccCccEEEEeCCeEEEEEecCCC
Confidence 3568888877655333457899999999999988532 1122344556888999999998764433
No 106
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=83.43 E-value=16 Score=35.37 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=64.6
Q ss_pred ceEEEEeCCCC-----cEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCC-eEecCCCCccc
Q 011881 195 RCVRRYDPIAN-----TWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA-WSEVPSMPFSR 268 (475)
Q Consensus 195 ~~~~~yd~~t~-----~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~-W~~~~~~p~~r 268 (475)
..+..|+.... +++.+.....+-.-.+++.++++|.+.-| +.+.+|+...++ +...+.+..+-
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-----------~~l~v~~l~~~~~l~~~~~~~~~~ 130 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-----------NKLYVYDLDNSKTLLKKAFYDSPF 130 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-----------TEEEEEEEETTSSEEEEEEE-BSS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-----------CEEEEEEccCcccchhhheecceE
Confidence 67888988885 56666544443345567778999776655 578888888888 77776554433
Q ss_pred cCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCC
Q 011881 269 AQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPI 327 (475)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~ 327 (475)
.- ..+.++++.|++---..+ +....|+.+..+-..+..
T Consensus 131 ~i---------------~sl~~~~~~I~vgD~~~s------v~~~~~~~~~~~l~~va~ 168 (321)
T PF03178_consen 131 YI---------------TSLSVFKNYILVGDAMKS------VSLLRYDEENNKLILVAR 168 (321)
T ss_dssp SE---------------EEEEEETTEEEEEESSSS------EEEEEEETTTE-EEEEEE
T ss_pred EE---------------EEEeccccEEEEEEcccC------EEEEEEEccCCEEEEEEe
Confidence 32 677788888776322221 333677886666777654
No 107
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=83.43 E-value=52 Score=32.99 Aligned_cols=139 Identities=18% Similarity=0.089 Sum_probs=72.6
Q ss_pred CeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCC-EEEEeccCCCCCceeccceEEEeCCCCceEE
Q 011881 246 QSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMG-RLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE 324 (475)
Q Consensus 246 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~ 324 (475)
..+++||..+++-+.+...+.... .....-++ .|++.....+. ...+.+|+.++..+.
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~----------------~~~~spDg~~l~~~~~~~~~-----~~i~~~d~~~~~~~~ 272 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNG----------------APAFSPDGSKLAVSLSKDGN-----PDIYVMDLDGKQLTR 272 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCcc----------------ceEECCCCCEEEEEECCCCC-----ccEEEEECCCCCEEE
Confidence 579999999887666654332211 11223344 45543322211 223778998888777
Q ss_pred cCCCCCCCCCCccCCCeEEEEECCe-EEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeE-EEEeCCeE
Q 011881 325 MPIGMGEGWPARQAGTKLSVVLDGE-LYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYL-LSAFHGKL 402 (475)
Q Consensus 325 ~~~~~~~~~p~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~-~~~~~~~l 402 (475)
+..... .. ... ....+++ |++..... ....++.+|..+.+++.+... ...... ...-+|+.
T Consensus 273 l~~~~~-----~~-~~~-~~s~dg~~l~~~s~~~--g~~~iy~~d~~~~~~~~l~~~--------~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 273 LTNGPG-----ID-TEP-SWSPDGKSIAFTSDRG--GSPQIYMMDADGGEVRRLTFR--------GGYNASPSWSPDGDL 335 (417)
T ss_pred CCCCCC-----CC-CCE-EECCCCCEEEEEECCC--CCceEEEEECCCCCEEEeecC--------CCCccCeEECCCCCE
Confidence 654111 00 011 1223454 44443222 124899999998888776421 111112 22346677
Q ss_pred EEEeecCCCCeeEEEecCCC
Q 011881 403 HVLTKDASRNISILRADPRD 422 (475)
Q Consensus 403 ~v~GG~~~~~~~v~~~d~~~ 422 (475)
+++.........+..+|+..
T Consensus 336 i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred EEEEEccCCceEEEEEeCCC
Confidence 77766555555677777654
No 108
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=83.00 E-value=50 Score=32.43 Aligned_cols=163 Identities=21% Similarity=0.181 Sum_probs=76.9
Q ss_pred eeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCCC--eEecCCC-----CccccCCCCccccccccccceeeEE
Q 011881 219 YCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA--WSEVPSM-----PFSRAQGLPNAFFADMLKPIATGMT 289 (475)
Q Consensus 219 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~-----p~~r~~~~~~~~~~~~~~~~~~~~~ 289 (475)
-|.+... +..+||.-= -.+.+.+|+...+. ....... ..|| |.+.
T Consensus 146 ~H~v~~~pdg~~v~v~dl---------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR-----------------h~~f 199 (345)
T PF10282_consen 146 PHQVVFSPDGRFVYVPDL---------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR-----------------HLAF 199 (345)
T ss_dssp EEEEEE-TTSSEEEEEET---------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE-----------------EEEE
T ss_pred ceeEEECCCCCEEEEEec---------CCCEEEEEEEeCCCceEEEeeccccccCCCCc-----------------EEEE
Confidence 3444444 346777531 14678888887765 5442222 2222 3233
Q ss_pred EeC-CEEEEeccCCCCCceeccceEEEeCCCCceEEcCCC--CCCCCCCccCCCeEEEEE--CCeEEEEcCCCCCCCCeE
Q 011881 290 SYM-GRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIG--MGEGWPARQAGTKLSVVL--DGELYAFDPSSSLNSAKI 364 (475)
Q Consensus 290 ~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~--~~~~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v 364 (475)
.-+ ..+||..-..+. +....|+..+++++.+..- .+..+.... ..+.++.. +..||+..- ..+.|
T Consensus 200 ~pdg~~~Yv~~e~s~~-----v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~i~ispdg~~lyvsnr----~~~sI 269 (345)
T PF10282_consen 200 SPDGKYAYVVNELSNT-----VSVFDYDPSDGSLTEIQTISTLPEGFTGEN-APAEIAISPDGRFLYVSNR----GSNSI 269 (345)
T ss_dssp -TTSSEEEEEETTTTE-----EEEEEEETTTTEEEEEEEEESCETTSCSSS-SEEEEEE-TTSSEEEEEEC----TTTEE
T ss_pred cCCcCEEEEecCCCCc-----EEEEeecccCCceeEEEEeeeccccccccC-CceeEEEecCCCEEEEEec----cCCEE
Confidence 333 468887654332 3335566557777664321 211111111 12223333 345787642 13678
Q ss_pred EEEeC--CCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCC
Q 011881 365 KVYDQ--KEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPR 421 (475)
Q Consensus 365 ~~yd~--~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~ 421 (475)
.+|+. ++++-+.+. ..+.. ...+| +....-+|+.++++....+.+.+...|..
T Consensus 270 ~vf~~d~~~g~l~~~~-~~~~~-G~~Pr--~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQ-TVPTG-GKFPR--HFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp EEEEECTTTTTEEEEE-EEEES-SSSEE--EEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred EEEEEecCCCceEEEE-EEeCC-CCCcc--EEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 88887 445666553 22221 11122 12223366666667766776666655443
No 109
>PRK05137 tolB translocation protein TolB; Provisional
Probab=82.93 E-value=58 Score=33.14 Aligned_cols=149 Identities=13% Similarity=-0.012 Sum_probs=71.7
Q ss_pred cceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCC
Q 011881 194 MRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLP 273 (475)
Q Consensus 194 ~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 273 (475)
..+++.+|..+...+.+..-+..-.. ....-+++-.++.... .+ ...++++|..+...+.+..... ...
T Consensus 269 ~~~Iy~~d~~~~~~~~Lt~~~~~~~~-~~~spDG~~i~f~s~~---~g---~~~Iy~~d~~g~~~~~lt~~~~-~~~--- 337 (435)
T PRK05137 269 NTDIYTMDLRSGTTTRLTDSPAIDTS-PSYSPDGSQIVFESDR---SG---SPQLYVMNADGSNPRRISFGGG-RYS--- 337 (435)
T ss_pred CceEEEEECCCCceEEccCCCCccCc-eeEcCCCCEEEEEECC---CC---CCeEEEEECCCCCeEEeecCCC-ccc---
Confidence 35899999999888777543321111 1112244433333211 11 2578999988877776643211 111
Q ss_pred ccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEE
Q 011881 274 NAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAF 353 (475)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~ 353 (475)
.....-+|+..++....... .....+|+.++....+.... . .... ...-+|+.+++
T Consensus 338 ------------~~~~SpdG~~ia~~~~~~~~----~~i~~~d~~~~~~~~lt~~~------~-~~~p-~~spDG~~i~~ 393 (435)
T PRK05137 338 ------------TPVWSPRGDLIAFTKQGGGQ----FSIGVMKPDGSGERILTSGF------L-VEGP-TWAPNGRVIMF 393 (435)
T ss_pred ------------CeEECCCCCEEEEEEcCCCc----eEEEEEECCCCceEeccCCC------C-CCCC-eECCCCCEEEE
Confidence 11223344433322211110 12377888777666554311 1 1111 23445554444
Q ss_pred cCC-CCCC-CCeEEEEeCCCCcEEEc
Q 011881 354 DPS-SSLN-SAKIKVYDQKEDTWKVV 377 (475)
Q Consensus 354 GG~-~~~~-~~~v~~yd~~~~~W~~v 377 (475)
... .... ...++.+|.....-+.+
T Consensus 394 ~~~~~~~~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 394 FRQTPGSGGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred EEccCCCCCcceEEEEECCCCceEEc
Confidence 222 2111 14789999887665555
No 110
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=82.72 E-value=48 Score=32.08 Aligned_cols=63 Identities=13% Similarity=-0.042 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCC-CCcEEeCCCCCCccceeeeEEE-CC-EEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPI-ANTWNEATSMSVGRAYCKTGIL-ND-KLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~-t~~W~~~~~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
+..||+.+. . ...+..|+.. +.+++.+...+.+..-+.++.. ++ .||+..-. .+.+.+||..+
T Consensus 46 ~~~lyv~~~-~----~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~---------~~~v~v~~~~~ 111 (330)
T PRK11028 46 KRHLYVGVR-P----EFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN---------ANCVSVSPLDK 111 (330)
T ss_pred CCEEEEEEC-C----CCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC---------CCeEEEEEECC
Confidence 445676543 1 2456666665 4567655443332222223333 34 56665421 25777888764
No 111
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=82.33 E-value=49 Score=31.89 Aligned_cols=182 Identities=15% Similarity=0.180 Sum_probs=76.9
Q ss_pred eEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCC-CCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEE
Q 011881 174 AIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEAT-SMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVF 251 (475)
Q Consensus 174 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~-~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~y 251 (475)
++...++..|++|.. .-++.-.-.-.+|++++ +.+.+-..+.+..+ ++.++++|.. ..+++=
T Consensus 66 ~I~f~~~~g~ivG~~------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~----------G~iy~T 129 (302)
T PF14870_consen 66 SISFDGNEGWIVGEP------GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR----------GAIYRT 129 (302)
T ss_dssp EEEEETTEEEEEEET------TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT------------EEEE
T ss_pred EEEecCCceEEEcCC------ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC----------CcEEEe
Confidence 444567889988731 13444444567899985 23334444444444 5677777642 244444
Q ss_pred eCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCC
Q 011881 252 DPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGE 331 (475)
Q Consensus 252 d~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 331 (475)
.-.-.+|+.+..-...-.. .....-+|++.+++.... + -...|+-...|+.....
T Consensus 130 ~DgG~tW~~~~~~~~gs~~---------------~~~r~~dG~~vavs~~G~------~-~~s~~~G~~~w~~~~r~--- 184 (302)
T PF14870_consen 130 TDGGKTWQAVVSETSGSIN---------------DITRSSDGRYVAVSSRGN------F-YSSWDPGQTTWQPHNRN--- 184 (302)
T ss_dssp SSTTSSEEEEE-S----EE---------------EEEE-TTS-EEEEETTSS------E-EEEE-TT-SS-EEEE-----
T ss_pred CCCCCCeeEcccCCcceeE---------------eEEECCCCcEEEEECccc------E-EEEecCCCccceEEccC---
Confidence 4455689986432211000 222234566554442111 0 03457888889987652
Q ss_pred CCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEe--CCCCcEEEcCCcCccccCCCCCCC-eEEEE-eCCeEEEEee
Q 011881 332 GWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYD--QKEDTWKVVIGKVPIRDFADSESP-YLLSA-FHGKLHVLTK 407 (475)
Q Consensus 332 ~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd--~~~~~W~~v~~~~p~~~~~~~r~~-~~~~~-~~~~l~v~GG 407 (475)
..+.-......-++.|+++. .. ..+..=+ ....+|.+-. .| ......+ ..++. -++.+++.||
T Consensus 185 ---~~~riq~~gf~~~~~lw~~~-~G----g~~~~s~~~~~~~~w~~~~--~~---~~~~~~~~ld~a~~~~~~~wa~gg 251 (302)
T PF14870_consen 185 ---SSRRIQSMGFSPDGNLWMLA-RG----GQIQFSDDPDDGETWSEPI--IP---IKTNGYGILDLAYRPPNEIWAVGG 251 (302)
T ss_dssp ---SSS-EEEEEE-TTS-EEEEE-TT----TEEEEEE-TTEEEEE---B---T---TSS--S-EEEEEESSSS-EEEEES
T ss_pred ---ccceehhceecCCCCEEEEe-CC----cEEEEccCCCCcccccccc--CC---cccCceeeEEEEecCCCCEEEEeC
Confidence 12222222334567787774 11 2455444 3456788721 11 1112222 22332 2578888887
Q ss_pred cC
Q 011881 408 DA 409 (475)
Q Consensus 408 ~~ 409 (475)
.+
T Consensus 252 ~G 253 (302)
T PF14870_consen 252 SG 253 (302)
T ss_dssp TT
T ss_pred Cc
Confidence 54
No 112
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=82.15 E-value=37 Score=31.54 Aligned_cols=214 Identities=12% Similarity=0.134 Sum_probs=93.5
Q ss_pred EEEeCCEEEE--EcCC-CCCCCcceEEEEeC-CCCcEEeC---CC----CCC-ccceeeeEEECCEEEEEeceecCCCCc
Q 011881 175 IGAVDGCLYV--LGGF-SRTSAMRCVRRYDP-IANTWNEA---TS----MSV-GRAYCKTGILNDKLYVVGGVSRARGGL 242 (475)
Q Consensus 175 ~~~~~~~lyv--~GG~-~~~~~~~~~~~yd~-~t~~W~~~---~~----~p~-~R~~~~~~~~~~~iyv~GG~~~~~~~~ 242 (475)
+.+.++-||. .+|. .+-..+.-.|+=.- ..++|+.- .+ -|. .-..+++.+++++||++=-...-. .
T Consensus 21 aFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a--~ 98 (367)
T PF12217_consen 21 AFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVA--S 98 (367)
T ss_dssp -EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETT--T
T ss_pred ceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhh--h
Confidence 3467777774 3443 23333444444333 24567642 22 222 223456778999999986543211 1
Q ss_pred ccCCeEEEEe---CCCCCeEe--cCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeC
Q 011881 243 TPLQSAEVFD---PTTDAWSE--VPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDP 317 (475)
Q Consensus 243 ~~~~~~~~yd---~~t~~W~~--~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~ 317 (475)
..+...+.|| ...+.|+. ++..|....... -..-.|+.+.+++.-|.+|-.++.-....+|...|..
T Consensus 99 ~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~--------~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~ 170 (367)
T PF12217_consen 99 NKMVRAELWSRPMFHDSPWRITELGTIASFTSAGV--------AVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSD 170 (367)
T ss_dssp --EEEEEEEEEE-STTS--EEEEEES-TT----------------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETT
T ss_pred hhhhhhhhhcccccccCCceeeecccccccccccc--------eeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecc
Confidence 2344556665 35677875 333333222211 1122388899999888888655543332233333311
Q ss_pred ----CCCce-EEcCCCCCCCCCCccCCCeEEEEECCeEEEEc-CCCC-CCCCeEEEEeCCCCcEEEcCCcCccccCCCCC
Q 011881 318 ----DTNSW-VEMPIGMGEGWPARQAGTKLSVVLDGELYAFD-PSSS-LNSAKIKVYDQKEDTWKVVIGKVPIRDFADSE 390 (475)
Q Consensus 318 ----~~~~W-~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~G-G~~~-~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r 390 (475)
-...= ..++... .+.+.-.++-.++|.||+.. |... .....+.+-+.....|..+.- |. +. ..
T Consensus 171 ~~~sp~~~vrr~i~sey-----~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf--p~-nv--Hh 240 (367)
T PF12217_consen 171 AFASPGVFVRRIIPSEY-----ERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF--PN-NV--HH 240 (367)
T ss_dssp TTT-TT--EEEE--GGG------TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE---TT------S
T ss_pred cccCCcceeeeechhhh-----ccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc--cc-cc--cc
Confidence 11111 1122111 11122223557899999983 3222 223467777777788998742 21 11 12
Q ss_pred CCeEEEEeCCeEEEEeec
Q 011881 391 SPYLLSAFHGKLHVLTKD 408 (475)
Q Consensus 391 ~~~~~~~~~~~l~v~GG~ 408 (475)
...-.+..++.||+||-+
T Consensus 241 tnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 241 TNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp S---EEEETTEEEEEEE-
T ss_pred cCCCceeeCCEEEEEecc
Confidence 223456789999999963
No 113
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=81.32 E-value=54 Score=31.72 Aligned_cols=69 Identities=12% Similarity=0.010 Sum_probs=36.8
Q ss_pred EEEEEcCCCCCCCcceEEEEeCCC-CcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCC-CC
Q 011881 181 CLYVLGGFSRTSAMRCVRRYDPIA-NTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPT-TD 256 (475)
Q Consensus 181 ~lyv~GG~~~~~~~~~~~~yd~~t-~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~-t~ 256 (475)
.+|+..+.+ ..+.+||..+ .+++.+...+.....+.++.. +..||+.+.. ...+..|+.. ++
T Consensus 3 ~~y~~~~~~-----~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~---------~~~i~~~~~~~~g 68 (330)
T PRK11028 3 IVYIASPES-----QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP---------EFRVLSYRIADDG 68 (330)
T ss_pred EEEEEcCCC-----CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC---------CCcEEEEEECCCC
Confidence 467764432 4667777754 567766555433222223332 3457775431 2466677775 45
Q ss_pred CeEecCC
Q 011881 257 AWSEVPS 263 (475)
Q Consensus 257 ~W~~~~~ 263 (475)
+++.+..
T Consensus 69 ~l~~~~~ 75 (330)
T PRK11028 69 ALTFAAE 75 (330)
T ss_pred ceEEeee
Confidence 6765543
No 114
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=81.11 E-value=5.3 Score=38.74 Aligned_cols=55 Identities=24% Similarity=0.206 Sum_probs=32.7
Q ss_pred eeeEeeecccCCC------CCCCCCccc-------eeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEe
Q 011881 151 IAEVVRGWLGWND------TLPQMPFCG-------CAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNE 209 (475)
Q Consensus 151 ~~~~~~~~~~~~~------~~~p~pr~~-------~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~ 209 (475)
..+.+..|+..+- .+|+.||.. .++..-+..+||. +-.+..+|-+.|...++-..
T Consensus 65 RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~----N~TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 65 RTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQ----NFTPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEE----EESSSEEEEEEETTTTEEEE
T ss_pred ceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEE----ccCCCCeEEEEECCCCceee
Confidence 3566777777664 344444432 1222234557776 45677899999999988654
No 115
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=80.87 E-value=59 Score=31.89 Aligned_cols=70 Identities=26% Similarity=0.126 Sum_probs=37.6
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE---CCEEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL---NDKLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
-++.||+..........-..+..+..+.+.+.+...+..-...+-+.+ +..||+.--. ...+.+|+..
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~---------~g~v~v~~l~ 117 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG---------GGSVSVFPLD 117 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT---------TTEEEEEEEC
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc---------CCeEEEEEcc
Confidence 467789886432122222344455555788888766532222222333 4567765311 2567788777
Q ss_pred CC
Q 011881 255 TD 256 (475)
Q Consensus 255 t~ 256 (475)
.+
T Consensus 118 ~~ 119 (345)
T PF10282_consen 118 DD 119 (345)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 116
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=80.34 E-value=49 Score=30.59 Aligned_cols=193 Identities=16% Similarity=0.162 Sum_probs=100.1
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeC----CCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDP----IANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~----~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
++++|++.+.. ...+..|.. ....|...-.+|.+-.+..-++++|.+|.-.+. ...+-+||.+
T Consensus 30 ~~r~~~~~~~~----~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk~~---------t~~ivky~l~ 96 (249)
T KOG3545|consen 30 DDRIYVMNYFD----GLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNKAG---------TRNIIKYDLE 96 (249)
T ss_pred cCceEEecccc----CceEEEeccHHHhhccCcceEEeCCCCccccceEEEcceEEeeccC---------CcceEEEEee
Confidence 67889884433 245555554 234465556678877888888999998887642 4678899998
Q ss_pred CC---CeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCC----CCceEEcCC
Q 011881 255 TD---AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPD----TNSWVEMPI 327 (475)
Q Consensus 255 t~---~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~----~~~W~~~~~ 327 (475)
+. .|+.++.+-..-..........+ .-.++-..-++++=-..+.... +-....|+. ..+|..--
T Consensus 97 ~~~~~~~~~lp~a~y~~~~~y~~~g~sd------iD~avDE~GLWviYat~~~~g~--iv~skLdp~tl~~e~tW~T~~- 167 (249)
T KOG3545|consen 97 TRTVAGSAALPYAGYHNPSPYYWGGHSD------IDLAVDENGLWVIYATPENAGT--IVLSKLDPETLEVERTWNTTL- 167 (249)
T ss_pred cceeeeeeeccccccCCCcccccCCCcc------ccceecccceeEEecccccCCc--EEeeccCHHHhheeeeecccc-
Confidence 84 36666543221110000000000 1223333445543211111111 111456663 34574322
Q ss_pred CCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEE---EeCCeEEE
Q 011881 328 GMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLS---AFHGKLHV 404 (475)
Q Consensus 328 ~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~---~~~~~l~v 404 (475)
+....+. +.++=|.||++-........--+.||..+++=+.+ .+|.. ..-...++. ..+.+||+
T Consensus 168 ------~k~~~~~--aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~--~ipf~---N~y~~~~~idYNP~D~~LY~ 234 (249)
T KOG3545|consen 168 ------PKRSAGN--AFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERI--DLPFP---NPYSYATMIDYNPRDRRLYA 234 (249)
T ss_pred ------CCCCcCc--eEEEeeeeEEEeccccCCceEEEEEEcCCCceecc--ccccc---chhhhhhccCCCcccceeeE
Confidence 2233332 56677889999765443333337999998877554 23322 222222333 34677887
Q ss_pred Ee
Q 011881 405 LT 406 (475)
Q Consensus 405 ~G 406 (475)
+-
T Consensus 235 wd 236 (249)
T KOG3545|consen 235 WD 236 (249)
T ss_pred ec
Confidence 63
No 117
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=79.10 E-value=84 Score=32.59 Aligned_cols=83 Identities=17% Similarity=0.272 Sum_probs=42.3
Q ss_pred EEEeCCCCc--eEEcCCCCCCCCC--CccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc--EEEcCCcCccccC
Q 011881 313 EIYDPDTNS--WVEMPIGMGEGWP--ARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT--WKVVIGKVPIRDF 386 (475)
Q Consensus 313 ~~yd~~~~~--W~~~~~~~~~~~p--~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~--W~~v~~~~p~~~~ 386 (475)
..+|..+++ |+.-.......++ .+..+ +..++.++.||+... ...++.+|.++.+ |+.- ++..
T Consensus 369 ~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~-~~~~~~g~~v~~g~~-----dG~l~ald~~tG~~lW~~~---~~~~-- 437 (488)
T cd00216 369 AALDPKTGKVVWEKREGTIRDSWNIGFPHWG-GSLATAGNLVFAGAA-----DGYFRAFDATTGKELWKFR---TPSG-- 437 (488)
T ss_pred EEEeCCCCcEeeEeeCCccccccccCCcccC-cceEecCCeEEEECC-----CCeEEEEECCCCceeeEEE---CCCC--
Confidence 678887665 8763220100000 01111 114566666666442 2579999998775 7742 1111
Q ss_pred CCCCCCeEEEEeCCeEEEEeec
Q 011881 387 ADSESPYLLSAFHGKLHVLTKD 408 (475)
Q Consensus 387 ~~~r~~~~~~~~~~~l~v~GG~ 408 (475)
....-.+...+|++||.--.
T Consensus 438 --~~a~P~~~~~~g~~yv~~~~ 457 (488)
T cd00216 438 --IQATPMTYEVNGKQYVGVMV 457 (488)
T ss_pred --ceEcCEEEEeCCEEEEEEEe
Confidence 01111233569999997643
No 118
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=78.94 E-value=50 Score=29.87 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.++++|+.+ ..+.+||..+.+-...-....... ..+... +++.+++++. ...+.+||..++
T Consensus 20 ~~~~l~~~~~~-----g~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~---------~~~i~i~~~~~~ 83 (289)
T cd00200 20 DGKLLATGSGD-----GTIKVWDLETGELLRTLKGHTGPV-RDVAASADGTYLASGSS---------DKTIRLWDLETG 83 (289)
T ss_pred CCCEEEEeecC-----cEEEEEEeeCCCcEEEEecCCcce-eEEEECCCCCEEEEEcC---------CCeEEEEEcCcc
Confidence 34566666542 367777777654211111111111 122222 4446666653 257888998875
No 119
>PRK00178 tolB translocation protein TolB; Provisional
Probab=78.36 E-value=80 Score=31.94 Aligned_cols=103 Identities=14% Similarity=-0.028 Sum_probs=55.5
Q ss_pred CeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCC-EEEEeccCCCCCceeccceEEEeCCCCceEE
Q 011881 246 QSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMG-RLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE 324 (475)
Q Consensus 246 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~ 324 (475)
..++++|+.+++-+.+...+.... .....-+| +|++....++. ...++||..+++.+.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~----------------~~~~SpDG~~la~~~~~~g~-----~~Iy~~d~~~~~~~~ 281 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNG----------------APAWSPDGSKLAFVLSKDGN-----PEIYVMDLASRQLSR 281 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcC----------------CeEECCCCCEEEEEEccCCC-----ceEEEEECCCCCeEE
Confidence 579999999988777754432111 11122344 34432211111 123788999999887
Q ss_pred cCCCCCCCCCCccCCCeEEEEECC-eEEEEcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 325 MPIGMGEGWPARQAGTKLSVVLDG-ELYAFDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 325 ~~~~~~~~~p~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
+..... . . ......-++ +|++..... ....++.+|..+++++++.
T Consensus 282 lt~~~~-----~-~-~~~~~spDg~~i~f~s~~~--g~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 282 VTNHPA-----I-D-TEPFWGKDGRTLYFTSDRG--GKPQIYKVNVNGGRAERVT 327 (430)
T ss_pred cccCCC-----C-c-CCeEECCCCCEEEEEECCC--CCceEEEEECCCCCEEEee
Confidence 754211 1 1 111223344 455543222 2257999999998888764
No 120
>PLN00181 protein SPA1-RELATED; Provisional
Probab=76.65 E-value=1.3e+02 Score=33.42 Aligned_cols=140 Identities=12% Similarity=0.068 Sum_probs=67.0
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
+...+.|+.+ ..+.+||..+++-...-.... ..-.+++.. ++.+++.||.+ ..+.+||..+..
T Consensus 545 ~~~las~~~D-----g~v~lWd~~~~~~~~~~~~H~-~~V~~l~~~p~~~~~L~Sgs~D---------g~v~iWd~~~~~ 609 (793)
T PLN00181 545 KSQVASSNFE-----GVVQVWDVARSQLVTEMKEHE-KRVWSIDYSSADPTLLASGSDD---------GSVKLWSINQGV 609 (793)
T ss_pred CCEEEEEeCC-----CeEEEEECCCCeEEEEecCCC-CCEEEEEEcCCCCCEEEEEcCC---------CEEEEEECCCCc
Confidence 3444555543 367778887654322111111 111122232 46777777742 578889987653
Q ss_pred eE-ecCCCCccccCCCCccccccccccceeeEE--EeCCEEEEeccCCCCCceeccceEEEeCCCCc--eEEcCCCCCCC
Q 011881 258 WS-EVPSMPFSRAQGLPNAFFADMLKPIATGMT--SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNS--WVEMPIGMGEG 332 (475)
Q Consensus 258 W~-~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~ 332 (475)
-. .+.. .... .++. ..++.+++.|+.++ ...+||..+.+ ...+..
T Consensus 610 ~~~~~~~----~~~v--------------~~v~~~~~~g~~latgs~dg-------~I~iwD~~~~~~~~~~~~~----- 659 (793)
T PLN00181 610 SIGTIKT----KANI--------------CCVQFPSESGRSLAFGSADH-------KVYYYDLRNPKLPLCTMIG----- 659 (793)
T ss_pred EEEEEec----CCCe--------------EEEEEeCCCCCEEEEEeCCC-------eEEEEECCCCCccceEecC-----
Confidence 21 1111 0110 1111 12466777776543 23778886543 222211
Q ss_pred CCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCC
Q 011881 333 WPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKE 371 (475)
Q Consensus 333 ~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~ 371 (475)
.......+...++..++.|+.+ +.+.+||+.+
T Consensus 660 ---h~~~V~~v~f~~~~~lvs~s~D----~~ikiWd~~~ 691 (793)
T PLN00181 660 ---HSKTVSYVRFVDSSTLVSSSTD----NTLKLWDLSM 691 (793)
T ss_pred ---CCCCEEEEEEeCCCEEEEEECC----CEEEEEeCCC
Confidence 1111111333466666666633 5688888764
No 121
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=75.88 E-value=61 Score=29.27 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=31.1
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCcccee-eeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYC-KTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
+..+++++.+ ..+.+||..+.+.... +....... .+... ++++++.++. ...+.+||+.+.+
T Consensus 63 ~~~l~~~~~~-----~~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~ 126 (289)
T cd00200 63 GTYLASGSSD-----KTIRLWDLETGECVRT--LTGHTSYVSSVAFSPDGRILSSSSR---------DKTIKVWDVETGK 126 (289)
T ss_pred CCEEEEEcCC-----CeEEEEEcCcccceEE--EeccCCcEEEEEEcCCCCEEEEecC---------CCeEEEEECCCcE
Confidence 3455555542 4678888876532211 11111111 22222 3466666652 2578899988544
No 122
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=75.17 E-value=69 Score=29.57 Aligned_cols=157 Identities=11% Similarity=0.102 Sum_probs=79.1
Q ss_pred CCcEEeCCCCCC-----ccceeeeEE-ECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCcccc
Q 011881 204 ANTWNEATSMSV-----GRAYCKTGI-LNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFF 277 (475)
Q Consensus 204 t~~W~~~~~~p~-----~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 277 (475)
..-|+..+||.. |-.+.-... -.+.|+..||- ..++..|.++++-+..=.-. ..
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD----------~~~y~~dlE~G~i~r~~rGH---tD------- 157 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD----------GVIYQVDLEDGRIQREYRGH---TD------- 157 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC----------eEEEEEEecCCEEEEEEcCC---cc-------
Confidence 345888777654 222211111 35788888882 47889999999876531100 00
Q ss_pred ccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCceEEc-CCCCCCCCCCccCCC--eEEEEECCeEEE
Q 011881 278 ADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEM-PIGMGEGWPARQAGT--KLSVVLDGELYA 352 (475)
Q Consensus 278 ~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~~~p~~~~~~--~~~~~~~~~lyv 352 (475)
+.|+++.- ++.| +-|+.++. +.++|.+|.+=.++ .+-.....-++..+. . +...+..-.|
T Consensus 158 ------YvH~vv~R~~~~qi-lsG~EDGt-------vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig-ala~~edWlv 222 (325)
T KOG0649|consen 158 ------YVHSVVGRNANGQI-LSGAEDGT-------VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG-ALAVNEDWLV 222 (325)
T ss_pred ------eeeeeeecccCcce-eecCCCcc-------EEEEeccccceeEEeccccChhhcCcccCceeE-EEeccCceEE
Confidence 11666542 3444 34555442 36789988887654 221111112333333 3 3344555566
Q ss_pred EcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecC
Q 011881 353 FDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDA 409 (475)
Q Consensus 353 ~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~ 409 (475)
+||- ..+-.+++...+=+.+ +|.+-. ...+.+.++.+++||+.
T Consensus 223 CGgG-----p~lslwhLrsse~t~v--------fpipa~-v~~v~F~~d~vl~~G~g 265 (325)
T KOG0649|consen 223 CGGG-----PKLSLWHLRSSESTCV--------FPIPAR-VHLVDFVDDCVLIGGEG 265 (325)
T ss_pred ecCC-----CceeEEeccCCCceEE--------Eecccc-eeEeeeecceEEEeccc
Confidence 6652 2344555554444443 122212 23455666666666644
No 123
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=74.36 E-value=82 Score=30.05 Aligned_cols=174 Identities=15% Similarity=0.206 Sum_probs=88.0
Q ss_pred EeCCCCCCc--cceeeeEEECCEEEEEeceecC-------CCC------cccCCeEEEEeCCCCC----eEecCCCCccc
Q 011881 208 NEATSMSVG--RAYCKTGILNDKLYVVGGVSRA-------RGG------LTPLQSAEVFDPTTDA----WSEVPSMPFSR 268 (475)
Q Consensus 208 ~~~~~~p~~--R~~~~~~~~~~~iyv~GG~~~~-------~~~------~~~~~~~~~yd~~t~~----W~~~~~~p~~r 268 (475)
+.+.+.|.. -.+-++..+++.||+ ||+-.. .++ .+..+.++.||.++++ |++- +..+.
T Consensus 26 elvG~~P~SGGDTYNAV~~vDd~IyF-GGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkes--ih~~~ 102 (339)
T PF09910_consen 26 ELVGPPPTSGGDTYNAVEWVDDFIYF-GGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKES--IHDKT 102 (339)
T ss_pred eeccCCCCCCCccceeeeeecceEEE-eeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecc--cCCcc
Confidence 345555532 223344556777774 665331 111 1235679999999987 5542 22222
Q ss_pred cCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECC
Q 011881 269 AQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDG 348 (475)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~ 348 (475)
... . =+.+ .-.--++++|++.-+ ++.. ..|++..|.+++.=+++... |.. -+ +.+.+-
T Consensus 103 ~Wa-G--EVSd------IlYdP~~D~LLlAR~-DGh~---nLGvy~ldr~~g~~~~L~~~-----ps~-KG---~~~~D~ 160 (339)
T PF09910_consen 103 KWA-G--EVSD------ILYDPYEDRLLLARA-DGHA---NLGVYSLDRRTGKAEKLSSN-----PSL-KG---TLVHDY 160 (339)
T ss_pred ccc-c--chhh------eeeCCCcCEEEEEec-CCcc---eeeeEEEcccCCceeeccCC-----CCc-Cc---eEeeee
Confidence 210 0 0000 000124677777432 2211 16778999999988887652 111 22 344554
Q ss_pred eEEEEcCCCCCCCCeEEEEeCCCCcE--EEcCCcCcc-ccCCCCCCCeEEEEeCCeEEEEee
Q 011881 349 ELYAFDPSSSLNSAKIKVYDQKEDTW--KVVIGKVPI-RDFADSESPYLLSAFHGKLHVLTK 407 (475)
Q Consensus 349 ~lyv~GG~~~~~~~~v~~yd~~~~~W--~~v~~~~p~-~~~~~~r~~~~~~~~~~~l~v~GG 407 (475)
..|-+ -.-......|.+||+.+++| +........ +.....+....++...+++|.|=+
T Consensus 161 a~F~i-~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~r 221 (339)
T PF09910_consen 161 ACFGI-NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVR 221 (339)
T ss_pred EEEec-cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEe
Confidence 44433 11111346899999999999 433211111 111223344466777788777643
No 124
>PRK03629 tolB translocation protein TolB; Provisional
Probab=71.47 E-value=1.2e+02 Score=30.77 Aligned_cols=181 Identities=11% Similarity=-0.004 Sum_probs=91.6
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEE-ECC-EEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCC
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGI-LND-KLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGL 272 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 272 (475)
..++++|+.+++-+.+...+..-. .... -++ +|++.... .+ ...++.+|..+++.+++..-+....
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~--~~~~SPDG~~La~~~~~----~g---~~~I~~~d~~tg~~~~lt~~~~~~~--- 290 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNG--APAFSPDGSKLAFALSK----TG---SLNLYVMDLASGQIRQVTDGRSNNT--- 290 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcC--CeEECCCCCEEEEEEcC----CC---CcEEEEEECCCCCEEEccCCCCCcC---
Confidence 578999998888777665443211 1222 244 55554321 11 2469999999988877754321111
Q ss_pred CccccccccccceeeEEEeCCEEEEecc-CCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEE
Q 011881 273 PNAFFADMLKPIATGMTSYMGRLCVPQS-LYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELY 351 (475)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~iyv~GG-~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~ly 351 (475)
.....-+|+..++.. ..+. ...+.+|+.++.-.++.... ...... ...-+|+.+
T Consensus 291 -------------~~~wSPDG~~I~f~s~~~g~-----~~Iy~~d~~~g~~~~lt~~~------~~~~~~-~~SpDG~~I 345 (429)
T PRK03629 291 -------------EPTWFPDSQNLAYTSDQAGR-----PQVYKVNINGGAPQRITWEG------SQNQDA-DVSSDGKFM 345 (429)
T ss_pred -------------ceEECCCCCEEEEEeCCCCC-----ceEEEEECCCCCeEEeecCC------CCccCE-EECCCCCEE
Confidence 112233454333322 1111 12366788877766654311 111111 233455544
Q ss_pred EEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCC
Q 011881 352 AFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPR 421 (475)
Q Consensus 352 v~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~ 421 (475)
++..... ....++.+|+++++++.+... ... .. -...-+|+.+++.+..+....+...++.
T Consensus 346 a~~~~~~-g~~~I~~~dl~~g~~~~Lt~~-----~~~--~~-p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 346 VMVSSNG-GQQHIAKQDLATGGVQVLTDT-----FLD--ET-PSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEEEccC-CCceEEEEECCCCCeEEeCCC-----CCC--CC-ceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 4432221 124799999999998887521 000 01 1233577777777765544334444443
No 125
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=70.25 E-value=99 Score=29.23 Aligned_cols=57 Identities=19% Similarity=0.459 Sum_probs=36.2
Q ss_pred EEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 313 EIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 313 ~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
.+|||.+..|.+.+-+-.. +++.. .-+--.+++++-.- ..+.|..||+++.+.+.++
T Consensus 257 ~rfdPs~~sW~eypLPgs~--arpys---~rVD~~grVW~sea----~agai~rfdpeta~ftv~p 313 (353)
T COG4257 257 HRFDPSVTSWIEYPLPGSK--ARPYS---MRVDRHGRVWLSEA----DAGAIGRFDPETARFTVLP 313 (353)
T ss_pred eEeCcccccceeeeCCCCC--CCcce---eeeccCCcEEeecc----ccCceeecCcccceEEEec
Confidence 6899999999987632111 22221 12223455666321 3468999999999999875
No 126
>PRK04043 tolB translocation protein TolB; Provisional
Probab=70.14 E-value=1.3e+02 Score=30.53 Aligned_cols=150 Identities=9% Similarity=-0.061 Sum_probs=77.8
Q ss_pred cceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCC
Q 011881 194 MRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLP 273 (475)
Q Consensus 194 ~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 273 (475)
..++|.+|..+.+++++.+.+..-....-.--+.+||+..... -...++++|..+++.+++..-. ...
T Consensus 256 ~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~-------g~~~Iy~~dl~~g~~~rlt~~g--~~~--- 323 (419)
T PRK04043 256 QPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL-------GYPNIFMKKLNSGSVEQVVFHG--KNN--- 323 (419)
T ss_pred CcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCC-------CCceEEEEECCCCCeEeCccCC--CcC---
Confidence 4689999999999998865443111111111244677665321 1368999999998887764321 111
Q ss_pred ccccccccccceeeEEEeCCEEEEeccCCCCCce--eccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEE
Q 011881 274 NAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFF--VDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELY 351 (475)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~ly 351 (475)
. ...-+|+..++-........ .....+.+|++++.++.+..... .... ...-||+.+
T Consensus 324 ------------~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~-------~~~p-~~SPDG~~I 382 (419)
T PRK04043 324 ------------S-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV-------NQFP-RFSSDGGSI 382 (419)
T ss_pred ------------c-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCC-------cCCe-EECCCCCEE
Confidence 1 22334443332222111000 00123788999999988875211 1111 344566544
Q ss_pred EEcCCCCCCCCeEEEEeCCCCcEEEc
Q 011881 352 AFDPSSSLNSAKIKVYDQKEDTWKVV 377 (475)
Q Consensus 352 v~GG~~~~~~~~v~~yd~~~~~W~~v 377 (475)
++-... .....++.++.+.+.=..+
T Consensus 383 ~f~~~~-~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 383 MFIKYL-GNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred EEEEcc-CCcEEEEEEecCCCeeEEe
Confidence 442211 1234688888876544444
No 127
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.23 E-value=97 Score=28.70 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=37.6
Q ss_pred eeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEE
Q 011881 286 TGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIK 365 (475)
Q Consensus 286 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~ 365 (475)
.+.+..+++++| +.-+.+.+.|+.-.- ..+|-.-.. ..-..-|.++.++|- .+.+.
T Consensus 226 iAS~SqDg~viI---------------wt~~~e~e~wk~tll---~~f~~~~w~--vSWS~sGn~LaVs~G----dNkvt 281 (299)
T KOG1332|consen 226 IASCSQDGTVII---------------WTKDEEYEPWKKTLL---EEFPDVVWR--VSWSLSGNILAVSGG----DNKVT 281 (299)
T ss_pred eEEecCCCcEEE---------------EEecCccCccccccc---ccCCcceEE--EEEeccccEEEEecC----CcEEE
Confidence 455677888877 555667788975321 112222221 123344445544431 25677
Q ss_pred EEeCCC-CcEEEcC
Q 011881 366 VYDQKE-DTWKVVI 378 (475)
Q Consensus 366 ~yd~~~-~~W~~v~ 378 (475)
++-... ++|.++.
T Consensus 282 lwke~~~Gkw~~v~ 295 (299)
T KOG1332|consen 282 LWKENVDGKWEEVG 295 (299)
T ss_pred EEEeCCCCcEEEcc
Confidence 776654 4899984
No 128
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=68.74 E-value=1.4e+02 Score=30.19 Aligned_cols=52 Identities=21% Similarity=0.142 Sum_probs=30.8
Q ss_pred EECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEE-eCCeEEEEe
Q 011881 345 VLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSA-FHGKLHVLT 406 (475)
Q Consensus 345 ~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~-~~~~l~v~G 406 (475)
.-++.+++.|.. ..+..-...-++|+++...- ..+ -..+.+.. -+++.|++|
T Consensus 336 ~~d~~~~a~G~~-----G~v~~s~D~G~tW~~~~~~~---~~~--~~ly~v~f~~~~~g~~~G 388 (398)
T PLN00033 336 RSKKEAWAAGGS-----GILLRSTDGGKSWKRDKGAD---NIA--ANLYSVKFFDDKKGFVLG 388 (398)
T ss_pred cCCCcEEEEECC-----CcEEEeCCCCcceeEccccC---CCC--cceeEEEEcCCCceEEEe
Confidence 346788888863 34666666778999975211 111 12334553 357888887
No 129
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=68.73 E-value=77 Score=31.88 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=77.7
Q ss_pred cceEEEEeCCCC-----cEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCC---eE-ecCCC
Q 011881 194 MRCVRRYDPIAN-----TWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA---WS-EVPSM 264 (475)
Q Consensus 194 ~~~~~~yd~~t~-----~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~---W~-~~~~~ 264 (475)
.+.++..|.... .|+.+.+--.. ....+...++.+|+....+ .....+..+++.+.. |. .+.+-
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~~~yi~Tn~~------a~~~~l~~~~l~~~~~~~~~~~l~~~ 323 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPREDG-VEYYVDHHGDRLYILTNDD------APNGRLVAVDLADPSPAEWWTVLIPE 323 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEESSSS--EEEEEEETTEEEEEE-TT-------TT-EEEEEETTSTSGGGEEEEEE--
T ss_pred CCeEEEEeccccCCCcCCcEEEeCCCCc-eEEEEEccCCEEEEeeCCC------CCCcEEEEecccccccccceeEEcCC
Confidence 478999999875 78887542222 2223444589999986521 234678888888765 66 43322
Q ss_pred CccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEE
Q 011881 265 PFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSV 344 (475)
Q Consensus 265 p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~ 344 (475)
.....- ..+...++.|++.-=.++. ....+||+. ..|.....++ +..+.....
T Consensus 324 ~~~~~l---------------~~~~~~~~~Lvl~~~~~~~-----~~l~v~~~~-~~~~~~~~~~------p~~g~v~~~ 376 (414)
T PF02897_consen 324 DEDVSL---------------EDVSLFKDYLVLSYRENGS-----SRLRVYDLD-DGKESREIPL------PEAGSVSGV 376 (414)
T ss_dssp SSSEEE---------------EEEEEETTEEEEEEEETTE-----EEEEEEETT--TEEEEEEES------SSSSEEEEE
T ss_pred CCceeE---------------EEEEEECCEEEEEEEECCc-----cEEEEEECC-CCcEEeeecC------CcceEEecc
Confidence 211111 4556678888774322211 112688887 3344332211 112211111
Q ss_pred E--E-CCeEEE-EcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 345 V--L-DGELYA-FDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 345 ~--~-~~~lyv-~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
. . .+.+++ +.+... ...++.||+.+++.+.++
T Consensus 377 ~~~~~~~~~~~~~ss~~~--P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 377 SGDFDSDELRFSYSSFTT--PPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ES-TT-SEEEEEEEETTE--EEEEEEEETTTTCEEEEE
T ss_pred CCCCCCCEEEEEEeCCCC--CCEEEEEECCCCCEEEEE
Confidence 1 1 233433 344322 258999999999887663
No 130
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=67.68 E-value=6.2 Score=39.19 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=33.8
Q ss_pred CCCCCCHHHHHHHhccCChhhhHHHHHhhhhhhhhcCC
Q 011881 42 LIPSLPDELSIQILARVPRIFYLNLRAVSRKWKATVTS 79 (475)
Q Consensus 42 ~~~~LP~dl~~~iL~~lp~~~l~~l~~vck~W~~l~~s 79 (475)
+.-.||+|++.++|+.|-..++.+.+.+|+.|+.+..+
T Consensus 71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD 108 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALD 108 (483)
T ss_pred ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc
Confidence 34469999999999999999999999999999998654
No 131
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=65.75 E-value=1.5e+02 Score=29.69 Aligned_cols=72 Identities=13% Similarity=0.109 Sum_probs=43.8
Q ss_pred eEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc---EE-eCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEE
Q 011881 174 AIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT---WN-EATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAE 249 (475)
Q Consensus 174 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~---W~-~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 249 (475)
.+...++.+|+.-. .+.....+..+++.... |. .+.+-.....--.+...+++|++.-=. .....+.
T Consensus 282 ~v~~~~~~~yi~Tn--~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~-------~~~~~l~ 352 (414)
T PF02897_consen 282 YVDHHGDRLYILTN--DDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE-------NGSSRLR 352 (414)
T ss_dssp EEEEETTEEEEEE---TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEE-------TTEEEEE
T ss_pred EEEccCCEEEEeeC--CCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEE-------CCccEEE
Confidence 34456888998764 33445688888888765 66 444333323334455678888887532 1357899
Q ss_pred EEeCC
Q 011881 250 VFDPT 254 (475)
Q Consensus 250 ~yd~~ 254 (475)
+||+.
T Consensus 353 v~~~~ 357 (414)
T PF02897_consen 353 VYDLD 357 (414)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99998
No 132
>PRK02889 tolB translocation protein TolB; Provisional
Probab=65.44 E-value=1.6e+02 Score=29.85 Aligned_cols=180 Identities=9% Similarity=-0.010 Sum_probs=87.8
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEE-ECC-EEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCC
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGI-LND-KLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGL 272 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 272 (475)
..++++|+.+.+=+.+...+..- ...+. -++ +|++.... ++ ..+++.+|..+...+++..-.. ...
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~--~~~~~SPDG~~la~~~~~----~g---~~~Iy~~d~~~~~~~~lt~~~~-~~~-- 287 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSN--SAPAWSPDGRTLAVALSR----DG---NSQIYTVNADGSGLRRLTQSSG-IDT-- 287 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCc--cceEECCCCCEEEEEEcc----CC---CceEEEEECCCCCcEECCCCCC-CCc--
Confidence 57999999888766665443211 11222 244 55544332 11 3578899988777666643211 111
Q ss_pred CccccccccccceeeEEEeCCE-EEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEE
Q 011881 273 PNAFFADMLKPIATGMTSYMGR-LCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELY 351 (475)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~ly 351 (475)
.....-+|+ |++.....+. ...+.+|..+++.+.+.... .... ......+|+..
T Consensus 288 -------------~~~wSpDG~~l~f~s~~~g~-----~~Iy~~~~~~g~~~~lt~~g------~~~~-~~~~SpDG~~I 342 (427)
T PRK02889 288 -------------EPFFSPDGRSIYFTSDRGGA-----PQIYRMPASGGAAQRVTFTG------SYNT-SPRISPDGKLL 342 (427)
T ss_pred -------------CeEEcCCCCEEEEEecCCCC-----cEEEEEECCCCceEEEecCC------CCcC-ceEECCCCCEE
Confidence 112333554 4433221111 12266777777776664211 1111 11233455543
Q ss_pred EE-cCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCC
Q 011881 352 AF-DPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPR 421 (475)
Q Consensus 352 v~-GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~ 421 (475)
++ ..... ...++++|+.+.+.+.+... . .. ..-...-+|+.+++....+....+...|+.
T Consensus 343 a~~s~~~g--~~~I~v~d~~~g~~~~lt~~-~-----~~--~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 343 AYISRVGG--AFKLYVQDLATGQVTALTDT-T-----RD--ESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred EEEEccCC--cEEEEEEECCCCCeEEccCC-C-----Cc--cCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 33 32221 23799999998887776421 0 00 111233467776666654444344455543
No 133
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=61.35 E-value=1.7e+02 Score=28.85 Aligned_cols=109 Identities=15% Similarity=0.172 Sum_probs=59.8
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCC--cEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIAN--TWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
.+|+||+-. .++ .+++||..+. .|+.-.+.. .+..-..++.++.+|+.-. ...+..+|..+
T Consensus 110 ~~G~i~~g~-~~g-----~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s~----------~g~~~al~~~t 172 (370)
T COG1520 110 SDGKIYVGS-WDG-----KLYALDASTGTLVWSRNVGGS-PYYASPPVVGDGTVYVGTD----------DGHLYALNADT 172 (370)
T ss_pred eCCeEEEec-ccc-----eEEEEECCCCcEEEEEecCCC-eEEecCcEEcCcEEEEecC----------CCeEEEEEccC
Confidence 377877543 322 7899999654 587654332 3333344555777777531 25778888876
Q ss_pred C--CeEecCCCC-ccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCc--eEE
Q 011881 256 D--AWSEVPSMP-FSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNS--WVE 324 (475)
Q Consensus 256 ~--~W~~~~~~p-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~ 324 (475)
. .|+.-.+.+ ..+.. ...+..++.+|+-... . +-....+|+++++ |+.
T Consensus 173 G~~~W~~~~~~~~~~~~~---------------~~~~~~~~~vy~~~~~--~----~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 173 GTLKWTYETPAPLSLSIY---------------GSPAIASGTVYVGSDG--Y----DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred CcEEEEEecCCccccccc---------------cCceeecceEEEecCC--C----cceEEEEEccCCcEeeee
Confidence 5 488543321 11111 1223566777773211 0 0123778887654 875
No 134
>PTZ00420 coronin; Provisional
Probab=60.76 E-value=2.3e+02 Score=30.07 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=15.7
Q ss_pred CCeEEEEcCCCCCCCCeEEEEeCCC
Q 011881 347 DGELYAFDPSSSLNSAKIKVYDQKE 371 (475)
Q Consensus 347 ~~~lyv~GG~~~~~~~~v~~yd~~~ 371 (475)
++..++.+|.+......+.+||+.+
T Consensus 225 d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 225 DDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred CCCEEEEEEcCCCCccEEEEEECCC
Confidence 4455666665543335799999874
No 135
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=58.82 E-value=1.1e+02 Score=28.31 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=58.9
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEEEC--CEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCC
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGILN--DKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGL 272 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 272 (475)
..+.+||..|.+-.+- +..--.....+.++ ..+.+-|+. -.++..+|..++.-+++.-+...+.+
T Consensus 81 k~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~Sgsf---------D~s~r~wDCRS~s~ePiQildea~D~-- 147 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSF---------DSSVRLWDCRSRSFEPIQILDEAKDG-- 147 (307)
T ss_pred ceEEEEEcccCeeeee--cccccceeeEEEecCcceEEEeccc---------cceeEEEEcccCCCCccchhhhhcCc--
Confidence 4788999998763221 00000111233443 346666665 36899999999998888877777776
Q ss_pred CccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCce
Q 011881 273 PNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSW 322 (475)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 322 (475)
...+.+.+...|.|..++. ...||...++-
T Consensus 148 -------------V~Si~v~~heIvaGS~DGt-------vRtydiR~G~l 177 (307)
T KOG0316|consen 148 -------------VSSIDVAEHEIVAGSVDGT-------VRTYDIRKGTL 177 (307)
T ss_pred -------------eeEEEecccEEEeeccCCc-------EEEEEeeccee
Confidence 4556667777776665543 25677766654
No 136
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=58.57 E-value=3.4e+02 Score=31.36 Aligned_cols=171 Identities=15% Similarity=0.108 Sum_probs=84.0
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCC-------CC------c--cceeeeEEE--CCEEEEEeceecCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSM-------SV------G--RAYCKTGIL--NDKLYVVGGVSRARGG 241 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~-------p~------~--R~~~~~~~~--~~~iyv~GG~~~~~~~ 241 (475)
++.|||.-.. ...+.++|+.++.=+.+..- .. . ..-+.+++. ++.|||....
T Consensus 635 gn~LYVaDt~-----n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~------ 703 (1057)
T PLN02919 635 KNLLYVADTE-----NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG------ 703 (1057)
T ss_pred CCEEEEEeCC-----CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC------
Confidence 5678887532 24678888877765544210 00 0 011223333 6789987542
Q ss_pred cccCCeEEEEeCCCCCeEecCCCCc--cccCCCCccccccccccceeeEEEe-C-CEEEEeccCCCCCceeccceEEEeC
Q 011881 242 LTPLQSAEVFDPTTDAWSEVPSMPF--SRAQGLPNAFFADMLKPIATGMTSY-M-GRLCVPQSLYSWPFFVDVGGEIYDP 317 (475)
Q Consensus 242 ~~~~~~~~~yd~~t~~W~~~~~~p~--~r~~~~~~~~~~~~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~ 317 (475)
.+.+++||+.++....+..-.. ...+..+. ........+++.. + +.|||....+ ....+||+
T Consensus 704 ---~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~----~~~~~~P~GIavspdG~~LYVADs~n-------~~Irv~D~ 769 (1057)
T PLN02919 704 ---QHQIWEYNISDGVTRVFSGDGYERNLNGSSGT----STSFAQPSGISLSPDLKELYIADSES-------SSIRALDL 769 (1057)
T ss_pred ---CCeEEEEECCCCeEEEEecCCccccCCCCccc----cccccCccEEEEeCCCCEEEEEECCC-------CeEEEEEC
Confidence 3678999998876554321100 00000000 0000001333332 3 4599865433 22378898
Q ss_pred CCCceEEcCCC-------C---C--CCC-CCccCC--CeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 318 DTNSWVEMPIG-------M---G--EGW-PARQAG--TKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 318 ~~~~W~~~~~~-------~---~--~~~-p~~~~~--~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
+++.-..+... + . .+. ...... .+.++.-+|.|||.... .+.|.+||++++....+.
T Consensus 770 ~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~----N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 770 KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY----NHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC----CCEEEEEECCCCeEEEEe
Confidence 87654322100 0 0 000 000000 12133456789998652 368999999998877654
No 137
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=58.47 E-value=2.1e+02 Score=28.85 Aligned_cols=70 Identities=10% Similarity=0.040 Sum_probs=38.0
Q ss_pred eEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCC---CCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEE
Q 011881 174 AIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSM---SVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAE 249 (475)
Q Consensus 174 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~ 249 (475)
.+...++..|++|-. ..++.=+-.-.+|+.++.. |.. ......+ ++.++++|.. ..++
T Consensus 141 ~v~f~~~~g~~vG~~------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~----------G~v~ 202 (398)
T PLN00033 141 SISFKGKEGWIIGKP------AILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE----------GAIY 202 (398)
T ss_pred eeEEECCEEEEEcCc------eEEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc----------ceEE
Confidence 344557788888632 1333333345789987542 322 2233334 4567777742 2344
Q ss_pred EEeCCCCCeEec
Q 011881 250 VFDPTTDAWSEV 261 (475)
Q Consensus 250 ~yd~~t~~W~~~ 261 (475)
+=+-.-.+|+.+
T Consensus 203 ~S~D~G~tW~~~ 214 (398)
T PLN00033 203 VTSNAGRNWKAA 214 (398)
T ss_pred EECCCCCCceEc
Confidence 444445689986
No 138
>PRK01742 tolB translocation protein TolB; Provisional
Probab=58.26 E-value=2.1e+02 Score=28.93 Aligned_cols=61 Identities=10% Similarity=0.016 Sum_probs=34.2
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEE-ECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCC
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGI-LNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPS 263 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 263 (475)
..++++|..+.+-+.+...+..- ..... -+++..+++... ++ ..+++.+|..++..+.+..
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~--~~~~wSPDG~~La~~~~~---~g---~~~Iy~~d~~~~~~~~lt~ 289 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHN--GAPAFSPDGSRLAFASSK---DG---VLNIYVMGANGGTPSQLTS 289 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCcc--CceeECCCCCEEEEEEec---CC---cEEEEEEECCCCCeEeecc
Confidence 57899999888766665443211 11222 255444443321 11 2468888998887766643
No 139
>PRK02889 tolB translocation protein TolB; Provisional
Probab=54.92 E-value=2.4e+02 Score=28.53 Aligned_cols=149 Identities=13% Similarity=-0.071 Sum_probs=69.7
Q ss_pred cceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCC
Q 011881 194 MRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLP 273 (475)
Q Consensus 194 ~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 273 (475)
...++..|......+.+..-...-... ...-+++.+++.... + ....++++|..+++=+.+...+....
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p-~wSPDG~~la~~s~~---~---~~~~I~~~dl~~g~~~~l~~~~g~~~---- 243 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISP-AWSPDGTKLAYVSFE---S---KKPVVYVHDLATGRRRVVANFKGSNS---- 243 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccc-eEcCCCCEEEEEEcc---C---CCcEEEEEECCCCCEEEeecCCCCcc----
Confidence 457888888655545443222111111 111244433333321 1 13579999998876555543331111
Q ss_pred ccccccccccceeeEEEeCC-EEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEE
Q 011881 274 NAFFADMLKPIATGMTSYMG-RLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYA 352 (475)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv 352 (475)
.....-+| +|++....++. ...+.+|..++...++.... .... .....-+|+.++
T Consensus 244 ------------~~~~SPDG~~la~~~~~~g~-----~~Iy~~d~~~~~~~~lt~~~------~~~~-~~~wSpDG~~l~ 299 (427)
T PRK02889 244 ------------APAWSPDGRTLAVALSRDGN-----SQIYTVNADGSGLRRLTQSS------GIDT-EPFFSPDGRSIY 299 (427)
T ss_pred ------------ceEECCCCCEEEEEEccCCC-----ceEEEEECCCCCcEECCCCC------CCCc-CeEEcCCCCEEE
Confidence 12223344 34433222221 22367788777766664311 0011 112334555333
Q ss_pred EcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 353 FDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 353 ~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
+.... .....++.+|..+...+.+.
T Consensus 300 f~s~~-~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 300 FTSDR-GGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred EEecC-CCCcEEEEEECCCCceEEEe
Confidence 32211 12247888898887777663
No 140
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=52.37 E-value=79 Score=30.90 Aligned_cols=74 Identities=23% Similarity=0.236 Sum_probs=35.4
Q ss_pred eCCEEEEec--cCCCCCceeccceEEEeCCCCceE-EcCCCCCCCCCCccCCCeEEEEECCe--EEEEcCCCCCCCCeEE
Q 011881 291 YMGRLCVPQ--SLYSWPFFVDVGGEIYDPDTNSWV-EMPIGMGEGWPARQAGTKLSVVLDGE--LYAFDPSSSLNSAKIK 365 (475)
Q Consensus 291 ~~~~iyv~G--G~~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~p~~~~~~~~~~~~~~~--lyv~GG~~~~~~~~v~ 365 (475)
-.++|||.- |..+........+++||+++.+=- +++- . .. ..+..+.-+++ ||.+-+ ....++
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l--~----~~--~~Si~Vsqd~~P~L~~~~~----~~~~l~ 315 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL--E----HP--IDSIAVSQDDKPLLYALSA----GDGTLD 315 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE--E----EE--ESEEEEESSSS-EEEEEET----TTTEEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC--C----Cc--cceEEEccCCCcEEEEEcC----CCCeEE
Confidence 367888762 211111111123489999988633 2221 0 01 11223344444 665533 125899
Q ss_pred EEeCCCCcEEE
Q 011881 366 VYDQKEDTWKV 376 (475)
Q Consensus 366 ~yd~~~~~W~~ 376 (475)
+||..+.+=..
T Consensus 316 v~D~~tGk~~~ 326 (342)
T PF06433_consen 316 VYDAATGKLVR 326 (342)
T ss_dssp EEETTT--EEE
T ss_pred EEeCcCCcEEe
Confidence 99999986544
No 141
>PTZ00421 coronin; Provisional
Probab=51.53 E-value=3e+02 Score=28.62 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=34.8
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCCcEEe-CCCCCCccceeeeEE-ECCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIANTWNE-ATSMSVGRAYCKTGI-LNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
+.+++.||.+ ..+.+||+.+.+-.. +...... -.++.. -++.+++.|+. -..+.+||+.+++
T Consensus 138 ~~iLaSgs~D-----gtVrIWDl~tg~~~~~l~~h~~~--V~sla~spdG~lLatgs~---------Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGAD-----MVVNVWDVERGKAVEVIKCHSDQ--ITSLEWNLDGSLLCTTSK---------DKKLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCC-----CEEEEEECCCCeEEEEEcCCCCc--eEEEEEECCCCEEEEecC---------CCEEEEEECCCCc
Confidence 3466666654 367888888764321 1111111 111222 26777777774 2578899998765
No 142
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=51.27 E-value=3.8e+02 Score=29.68 Aligned_cols=72 Identities=11% Similarity=0.104 Sum_probs=40.0
Q ss_pred eeEEEeCCEEEEEcCCC-C----CCCcceEEEEeCCCCc--EEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccC
Q 011881 173 CAIGAVDGCLYVLGGFS-R----TSAMRCVRRYDPIANT--WNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPL 245 (475)
Q Consensus 173 ~~~~~~~~~lyv~GG~~-~----~~~~~~~~~yd~~t~~--W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 245 (475)
.+-++.++.||+ |+.. + ......+..||..|.+ |+.-..-|... .....+..|..||-+ .
T Consensus 310 s~P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~----~~~~~g~~~~~gg~n--------~ 376 (764)
T TIGR03074 310 SPPLVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPT----APPAPGETYTRNTPN--------S 376 (764)
T ss_pred cCCEEECCEEEE-EecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcc----cCCCCCCEeccCCCC--------c
Confidence 334567787776 4331 1 1234578999999986 76432111110 111256677766531 2
Q ss_pred CeEEEEeCCCCC
Q 011881 246 QSAEVFDPTTDA 257 (475)
Q Consensus 246 ~~~~~yd~~t~~ 257 (475)
-....||++++.
T Consensus 377 W~~~s~D~~~gl 388 (764)
T TIGR03074 377 WSVASYDEKLGL 388 (764)
T ss_pred cCceEEcCCCCe
Confidence 345678888876
No 143
>PRK03629 tolB translocation protein TolB; Provisional
Probab=50.18 E-value=2.9e+02 Score=28.02 Aligned_cols=141 Identities=13% Similarity=0.085 Sum_probs=68.6
Q ss_pred CeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCE-EEEeccCCCCCceeccceEEEeCCCCceEE
Q 011881 246 QSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGR-LCVPQSLYSWPFFVDVGGEIYDPDTNSWVE 324 (475)
Q Consensus 246 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~ 324 (475)
..++++|..+++-+.+...+.... .....-+|+ |++.....+. ...+.+|.++++..+
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~----------------~~~~SPDG~~La~~~~~~g~-----~~I~~~d~~tg~~~~ 281 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNG----------------APAFSPDGSKLAFALSKTGS-----LNLYVMDLASGQIRQ 281 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcC----------------CeEECCCCCEEEEEEcCCCC-----cEEEEEECCCCCEEE
Confidence 578899998887666655432211 112233443 4443222211 123788999888877
Q ss_pred cCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEE
Q 011881 325 MPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHV 404 (475)
Q Consensus 325 ~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v 404 (475)
+.... .. . ......-+|+.+++..... ....++.+|+++..-+++.. ...........-+|+.++
T Consensus 282 lt~~~-----~~-~-~~~~wSPDG~~I~f~s~~~-g~~~Iy~~d~~~g~~~~lt~-------~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 282 VTDGR-----SN-N-TEPTWFPDSQNLAYTSDQA-GRPQVYKVNINGGAPQRITW-------EGSQNQDADVSSDGKFMV 346 (429)
T ss_pred ccCCC-----CC-c-CceEECCCCCEEEEEeCCC-CCceEEEEECCCCCeEEeec-------CCCCccCEEECCCCCEEE
Confidence 65421 01 1 1112334555444432111 12478999998877666531 011111122233555555
Q ss_pred EeecCCCCeeEEEecCCC
Q 011881 405 LTKDASRNISILRADPRD 422 (475)
Q Consensus 405 ~GG~~~~~~~v~~~d~~~ 422 (475)
+.+..+....+..+|+.+
T Consensus 347 ~~~~~~g~~~I~~~dl~~ 364 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLAT 364 (429)
T ss_pred EEEccCCCceEEEEECCC
Confidence 544333334455566543
No 144
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=49.56 E-value=3e+02 Score=28.03 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=38.0
Q ss_pred EeCCEEEEEcCCCCCCCcceEEEEeCCCCcEE-eC-CCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 177 AVDGCLYVLGGFSRTSAMRCVRRYDPIANTWN-EA-TSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 177 ~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~-~~-~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
..++.+++.|+-+. -+-.+|..+..-. .+ ..--.-|++ ++.-.++.|++.||++ ..+..||..
T Consensus 120 ~~d~t~l~s~sDd~-----v~k~~d~s~a~v~~~l~~htDYVR~g-~~~~~~~hivvtGsYD---------g~vrl~DtR 184 (487)
T KOG0310|consen 120 PQDNTMLVSGSDDK-----VVKYWDLSTAYVQAELSGHTDYVRCG-DISPANDHIVVTGSYD---------GKVRLWDTR 184 (487)
T ss_pred ccCCeEEEecCCCc-----eEEEEEcCCcEEEEEecCCcceeEee-ccccCCCeEEEecCCC---------ceEEEEEec
Confidence 56889999987432 2233444443311 11 111112222 2333578899999984 478889988
Q ss_pred CC-CeE
Q 011881 255 TD-AWS 259 (475)
Q Consensus 255 t~-~W~ 259 (475)
+. .|.
T Consensus 185 ~~~~~v 190 (487)
T KOG0310|consen 185 SLTSRV 190 (487)
T ss_pred cCCcee
Confidence 87 444
No 145
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=48.35 E-value=3e+02 Score=27.72 Aligned_cols=118 Identities=12% Similarity=0.241 Sum_probs=61.0
Q ss_pred cceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEE-EeCCE
Q 011881 217 RAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGR 294 (475)
Q Consensus 217 R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~ 294 (475)
...++++.+ +|-|+..|-. ...+.+||..... .++.+|..-.-. -+.. .-||.
T Consensus 348 v~~ts~~fHpDgLifgtgt~---------d~~vkiwdlks~~--~~a~Fpght~~v--------------k~i~FsENGY 402 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTP---------DGVVKIWDLKSQT--NVAKFPGHTGPV--------------KAISFSENGY 402 (506)
T ss_pred ceeEEeeEcCCceEEeccCC---------CceEEEEEcCCcc--ccccCCCCCCce--------------eEEEeccCce
Confidence 334555555 6666666643 2578889998876 566665421110 1222 23444
Q ss_pred EEEeccCCCCCceeccceEEEeCCCCc-eEEcCCCCCCCCCCccCCCeEEEEE--CCeEEEEcCCCCCCCCeEEEEeCCC
Q 011881 295 LCVPQSLYSWPFFVDVGGEIYDPDTNS-WVEMPIGMGEGWPARQAGTKLSVVL--DGELYAFDPSSSLNSAKIKVYDQKE 371 (475)
Q Consensus 295 iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~ 371 (475)
-.+.+- + |..+..+|+...+ ...+.. +... +.. ...+ -|+..+++|. .-.|+.|+-.+
T Consensus 403 ~Lat~a-d------d~~V~lwDLRKl~n~kt~~l------~~~~-~v~-s~~fD~SGt~L~~~g~----~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 403 WLATAA-D------DGSVKLWDLRKLKNFKTIQL------DEKK-EVN-SLSFDQSGTYLGIAGS----DLQVYICKKKT 463 (506)
T ss_pred EEEEEe-c------CCeEEEEEehhhcccceeec------cccc-cce-eEEEcCCCCeEEeecc----eeEEEEEeccc
Confidence 333221 1 1224677876544 111211 1111 111 2222 4667777763 23677778889
Q ss_pred CcEEEcC
Q 011881 372 DTWKVVI 378 (475)
Q Consensus 372 ~~W~~v~ 378 (475)
..|+++.
T Consensus 464 k~W~~~~ 470 (506)
T KOG0289|consen 464 KSWTEIK 470 (506)
T ss_pred ccceeee
Confidence 9999985
No 146
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=47.92 E-value=1.6e+02 Score=30.68 Aligned_cols=125 Identities=14% Similarity=0.064 Sum_probs=0.0
Q ss_pred CCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEE
Q 011881 213 MSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS 290 (475)
Q Consensus 213 ~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~ 290 (475)
+..|+.+..++.. .-.||+.|- -.+++++|++.++|-.--..-.+--. +.-..
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gs----------g~evYRlNLEqGrfL~P~~~~~~~lN---------------~v~in 184 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGS----------GSEVYRLNLEQGRFLNPFETDSGELN---------------VVSIN 184 (703)
T ss_pred eecCcCCccccccCCCccEEEeec----------CcceEEEEccccccccccccccccce---------------eeeec
Q ss_pred eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCC-----CeEEEEECCeEEEEcCCCCCCCCeEE
Q 011881 291 YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAG-----TKLSVVLDGELYAFDPSSSLNSAKIK 365 (475)
Q Consensus 291 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~-----~~~~~~~~~~lyv~GG~~~~~~~~v~ 365 (475)
--..|..+||.++. + +.+|+.+..=...-. .....+....+ .++...-++-|-+.=|... ..++
T Consensus 185 ~~hgLla~Gt~~g~-----V--EfwDpR~ksrv~~l~-~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~---G~v~ 253 (703)
T KOG2321|consen 185 EEHGLLACGTEDGV-----V--EFWDPRDKSRVGTLD-AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST---GSVL 253 (703)
T ss_pred CccceEEecccCce-----E--EEecchhhhhheeee-cccccCCCccccccCcceEEEecCCceeEEeeccC---CcEE
Q ss_pred EEeCCCCc
Q 011881 366 VYDQKEDT 373 (475)
Q Consensus 366 ~yd~~~~~ 373 (475)
+||+.+.+
T Consensus 254 iyDLRa~~ 261 (703)
T KOG2321|consen 254 IYDLRASK 261 (703)
T ss_pred EEEcccCC
No 147
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=47.46 E-value=2.5e+02 Score=27.78 Aligned_cols=77 Identities=17% Similarity=-0.066 Sum_probs=44.5
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeE-EECCEEEEEeceecCCCCcccCCeEEEEeCCCCCe
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTG-ILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAW 258 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 258 (475)
..+||.-...... .+.+.++|..+.+- +...+.+...+... --+..||+.-.+..........+.+.+||+.|.+=
T Consensus 13 ~~v~V~d~~~~~~-~~~v~ViD~~~~~v--~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 13 RRVYVLDPGHFAA-TTQVYTIDGEAGRV--LGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CEEEEECCccccc-CceEEEEECCCCEE--EEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 4577775432222 27899999888553 33333333222232 23568999876422222223467899999999874
Q ss_pred E
Q 011881 259 S 259 (475)
Q Consensus 259 ~ 259 (475)
.
T Consensus 90 ~ 90 (352)
T TIGR02658 90 I 90 (352)
T ss_pred E
Confidence 4
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=46.71 E-value=3.5e+02 Score=27.89 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=19.5
Q ss_pred EEEECCeEEEEcCCCCCCCCeEEEEeCCCCcE
Q 011881 343 SVVLDGELYAFDPSSSLNSAKIKVYDQKEDTW 374 (475)
Q Consensus 343 ~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W 374 (475)
....+..|++-=|. ...|..||...+.=
T Consensus 216 fspsne~l~vsVG~----Dkki~~yD~~s~~s 243 (673)
T KOG4378|consen 216 FSPSNEALLVSVGY----DKKINIYDIRSQAS 243 (673)
T ss_pred ecCCccceEEEecc----cceEEEeecccccc
Confidence 34567778887664 36899999986543
No 149
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=45.13 E-value=3.4e+02 Score=27.41 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=38.5
Q ss_pred CCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 190 RTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 190 ~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
.++..+.++++|-..+.--++.-+-..-.-.++-..++.+|++-=.. ++-+.+.|...
T Consensus 401 ~de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrq--------tDPlfviDlsN 458 (603)
T COG4880 401 EDEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQ--------TDPLFVIDLSN 458 (603)
T ss_pred CCCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEEec--------cCceEEEEcCC
Confidence 46778999999998887777665544333345566788888875331 34566666654
No 150
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=44.18 E-value=3e+02 Score=26.41 Aligned_cols=107 Identities=17% Similarity=0.128 Sum_probs=57.8
Q ss_pred eEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEE-EECCeEEEEcCCCCCCCCeEE
Q 011881 287 GMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSV-VLDGELYAFDPSSSLNSAKIK 365 (475)
Q Consensus 287 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~v~ 365 (475)
.++..+..=.+.||.++ .+-+||..+..=.++...-. +..++. ......+|.||.+ ..|.
T Consensus 59 ~c~F~d~~~~~~G~~dg-------~vr~~Dln~~~~~~igth~~--------~i~ci~~~~~~~~vIsgsWD----~~ik 119 (323)
T KOG1036|consen 59 DCAFADESTIVTGGLDG-------QVRRYDLNTGNEDQIGTHDE--------GIRCIEYSYEVGCVISGSWD----KTIK 119 (323)
T ss_pred eeeccCCceEEEeccCc-------eEEEEEecCCcceeeccCCC--------ceEEEEeeccCCeEEEcccC----ccEE
Confidence 34444544445566553 23789999988877765211 111112 1234456667754 5788
Q ss_pred EEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCCCCC
Q 011881 366 VYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPRDHL 424 (475)
Q Consensus 366 ~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~~~~ 424 (475)
.+|+... .. ...+.....-+++.+.+++|+| |+. +-.+..||++...
T Consensus 120 ~wD~R~~---~~-----~~~~d~~kkVy~~~v~g~~LvV-g~~---~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 120 FWDPRNK---VV-----VGTFDQGKKVYCMDVSGNRLVV-GTS---DRKVLIYDLRNLD 166 (323)
T ss_pred EEecccc---cc-----ccccccCceEEEEeccCCEEEE-eec---CceEEEEEccccc
Confidence 8888761 11 1122333344555555555554 443 2347888887543
No 151
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=44.05 E-value=3e+02 Score=26.40 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=66.2
Q ss_pred eEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCcc
Q 011881 196 CVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNA 275 (475)
Q Consensus 196 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~ 275 (475)
++..||..++.-+.. +...-.--.++..+..=.+.||. -..+.+||..+..=.++..--.+..
T Consensus 36 slrlYdv~~~~l~~~--~~~~~plL~c~F~d~~~~~~G~~---------dg~vr~~Dln~~~~~~igth~~~i~------ 98 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLK--FKHGAPLLDCAFADESTIVTGGL---------DGQVRRYDLNTGNEDQIGTHDEGIR------ 98 (323)
T ss_pred cEEEEeccchhhhhh--eecCCceeeeeccCCceEEEecc---------CceEEEEEecCCcceeeccCCCceE------
Confidence 677788877732221 11111112344556655666775 2589999999987666653222211
Q ss_pred ccccccccceeeEEE-eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEc
Q 011881 276 FFADMLKPIATGMTS-YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFD 354 (475)
Q Consensus 276 ~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~G 354 (475)
++.. ......|.||.+.. ...+|+.+..= +.. ... +.. .. +..+.+..+|+|
T Consensus 99 -----------ci~~~~~~~~vIsgsWD~~-------ik~wD~R~~~~--~~~-~d~--~kk-Vy---~~~v~g~~LvVg 151 (323)
T KOG1036|consen 99 -----------CIEYSYEVGCVISGSWDKT-------IKFWDPRNKVV--VGT-FDQ--GKK-VY---CMDVSGNRLVVG 151 (323)
T ss_pred -----------EEEeeccCCeEEEcccCcc-------EEEEecccccc--ccc-ccc--Cce-EE---EEeccCCEEEEe
Confidence 1111 22334566776542 36777765110 000 100 111 11 334556666666
Q ss_pred CCCCCCCCeEEEEeCCCC
Q 011881 355 PSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 355 G~~~~~~~~v~~yd~~~~ 372 (475)
+.+ ..+.+||+.+.
T Consensus 152 ~~~----r~v~iyDLRn~ 165 (323)
T KOG1036|consen 152 TSD----RKVLIYDLRNL 165 (323)
T ss_pred ecC----ceEEEEEcccc
Confidence 643 57999998764
No 152
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=41.95 E-value=3.5e+02 Score=26.63 Aligned_cols=154 Identities=15% Similarity=0.147 Sum_probs=83.4
Q ss_pred EEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEe
Q 011881 175 IGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFD 252 (475)
Q Consensus 175 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd 252 (475)
.+..++++|+.. .+ ..++.+|+.+.+ |+....-...........-+|+||+-.. + ..+++||
T Consensus 64 ~~~~dg~v~~~~-~~-----G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~-----~-----g~~y~ld 127 (370)
T COG1520 64 PADGDGTVYVGT-RD-----GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSW-----D-----GKLYALD 127 (370)
T ss_pred cEeeCCeEEEec-CC-----CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecc-----c-----ceEEEEE
Confidence 366788999861 11 178999999887 8754322001111112223788777543 1 2789999
Q ss_pred CCCC--CeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCC--ceEEcCCC
Q 011881 253 PTTD--AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTN--SWVEMPIG 328 (475)
Q Consensus 253 ~~t~--~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~ 328 (475)
..+. .|+.-.+.. ++.. ...+..++.+|+... + --..++|..++ .|+.-...
T Consensus 128 ~~~G~~~W~~~~~~~-~~~~---------------~~~v~~~~~v~~~s~-~-------g~~~al~~~tG~~~W~~~~~~ 183 (370)
T COG1520 128 ASTGTLVWSRNVGGS-PYYA---------------SPPVVGDGTVYVGTD-D-------GHLYALNADTGTLKWTYETPA 183 (370)
T ss_pred CCCCcEEEEEecCCC-eEEe---------------cCcEEcCcEEEEecC-C-------CeEEEEEccCCcEEEEEecCC
Confidence 9654 588654331 2222 445666777777420 0 11256666644 58743221
Q ss_pred CCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCC--cEEE
Q 011881 329 MGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKED--TWKV 376 (475)
Q Consensus 329 ~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~--~W~~ 376 (475)
. .+....+. .+..++.+|+-... . ...++.+|+++. .|+.
T Consensus 184 ~---~~~~~~~~--~~~~~~~vy~~~~~--~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 184 P---LSLSIYGS--PAIASGTVYVGSDG--Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred c---cccccccC--ceeecceEEEecCC--C-cceEEEEEccCCcEeeee
Confidence 0 01122222 23667777776332 1 337999999765 4874
No 153
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=41.52 E-value=50 Score=20.58 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=16.9
Q ss_pred EEEECCeEEEEcCCCCCCCCeEEEEeCCC
Q 011881 343 SVVLDGELYAFDPSSSLNSAKIKVYDQKE 371 (475)
Q Consensus 343 ~~~~~~~lyv~GG~~~~~~~~v~~yd~~~ 371 (475)
.++.++++|+.+. ...++++|+++
T Consensus 17 ~~v~~g~vyv~~~-----dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTG-----DGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-T-----TSEEEEEETT-
T ss_pred CEEECCEEEEEcC-----CCEEEEEeCCC
Confidence 4677899998875 35899999874
No 154
>PLN00181 protein SPA1-RELATED; Provisional
Probab=41.10 E-value=5.4e+02 Score=28.54 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=34.0
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE---CCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL---NDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
++.+++.||.++ .+.+||..+..-.. .+.. .....++.+ ++.+++.|+. ...+.+||..+
T Consensus 587 ~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~--~~~~-~~~v~~v~~~~~~g~~latgs~---------dg~I~iwD~~~ 649 (793)
T PLN00181 587 DPTLLASGSDDG-----SVKLWSINQGVSIG--TIKT-KANICCVQFPSESGRSLAFGSA---------DHKVYYYDLRN 649 (793)
T ss_pred CCCEEEEEcCCC-----EEEEEECCCCcEEE--EEec-CCCeEEEEEeCCCCCEEEEEeC---------CCeEEEEECCC
Confidence 456777777543 57788887643211 1111 111122222 4677777764 25789999876
Q ss_pred C
Q 011881 256 D 256 (475)
Q Consensus 256 ~ 256 (475)
.
T Consensus 650 ~ 650 (793)
T PLN00181 650 P 650 (793)
T ss_pred C
Confidence 4
No 155
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.61 E-value=3e+02 Score=26.51 Aligned_cols=111 Identities=19% Similarity=0.187 Sum_probs=54.0
Q ss_pred CCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCC-CCceEEcCCC--C
Q 011881 253 PTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPD-TNSWVEMPIG--M 329 (475)
Q Consensus 253 ~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~-~~~W~~~~~~--~ 329 (475)
....+|.+...|...|..+..-.|. +.-.....+++..+|.|-|+ +..||. -..|+..... +
T Consensus 97 ~~~~~Wv~~ttl~DsrssV~DV~Fa-P~hlGLklA~~~aDG~lRIY--------------EA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 97 AHGRRWVRRTTLVDSRSSVTDVKFA-PKHLGLKLAAASADGILRIY--------------EAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred cccceeEEEEEeecCCcceeEEEec-chhcceEEEEeccCcEEEEE--------------ecCCccccccchhhhhhhhc
Confidence 3446798888887777653211110 01111224455556665552 444543 3468754321 1
Q ss_pred CCCCCCccCCCeEEEEE-----CCeEEEEcCCCC-C--CCCeEEEEeCCCCcEEEcCC
Q 011881 330 GEGWPARQAGTKLSVVL-----DGELYAFDPSSS-L--NSAKIKVYDQKEDTWKVVIG 379 (475)
Q Consensus 330 ~~~~p~~~~~~~~~~~~-----~~~lyv~GG~~~-~--~~~~v~~yd~~~~~W~~v~~ 379 (475)
.. .|........++.. ...++++|-... . +...||.|+-..++|.++..
T Consensus 162 ~~-pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~ 218 (361)
T KOG2445|consen 162 ID-PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE 218 (361)
T ss_pred cC-CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh
Confidence 11 12222222213333 233666665431 1 22367777888889999854
No 156
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=39.90 E-value=3.1e+02 Score=25.44 Aligned_cols=29 Identities=17% Similarity=0.099 Sum_probs=22.2
Q ss_pred EEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEc
Q 011881 343 SVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVV 377 (475)
Q Consensus 343 ~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 377 (475)
++.....|++++- +.+++++..+.+..+.
T Consensus 234 ~~~~~pyli~~~~------~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 234 VAYSSPYLIAFSS------NSIEVRSLETGELVQT 262 (275)
T ss_pred EEEECCEEEEECC------CEEEEEECcCCcEEEE
Confidence 5667777777763 5799999999977654
No 157
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=38.74 E-value=6.8e+02 Score=29.01 Aligned_cols=170 Identities=14% Similarity=0.016 Sum_probs=81.1
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCC----------CCcc--ceeeeEEE--CCEEEEEeceecCCCCcc
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSM----------SVGR--AYCKTGIL--NDKLYVVGGVSRARGGLT 243 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~----------p~~R--~~~~~~~~--~~~iyv~GG~~~~~~~~~ 243 (475)
.++.|||.- ...+.+.++|+....-..+... ..++ .-+.+++. ++.|||.-..
T Consensus 578 ~~g~lyVaD-----s~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~-------- 644 (1057)
T PLN02919 578 LNNRLFISD-----SNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE-------- 644 (1057)
T ss_pred CCCeEEEEE-----CCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC--------
Confidence 468899874 2246788899876543333321 1111 11334443 4678997542
Q ss_pred cCCeEEEEeCCCCCeEecCCCCcc---ccCCCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCC
Q 011881 244 PLQSAEVFDPTTDAWSEVPSMPFS---RAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPD 318 (475)
Q Consensus 244 ~~~~~~~yd~~t~~W~~~~~~p~~---r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~ 318 (475)
.+.+.++|+.++.=+.+..-... ..+..... ...++ ....+++. ++.|||....+ ....+||+.
T Consensus 645 -n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~--~~~ln-~P~gVa~dp~~g~LyVad~~~-------~~I~v~d~~ 713 (1057)
T PLN02919 645 -NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGT--SQVLN-SPWDVCFEPVNEKVYIAMAGQ-------HQIWEYNIS 713 (1057)
T ss_pred -CceEEEEecCCCEEEEEeccCcccCCCCCChhhh--HhhcC-CCeEEEEecCCCeEEEEECCC-------CeEEEEECC
Confidence 25788899888765544321000 00000000 00000 00233333 67899864322 123778887
Q ss_pred CCceEEcCCCCC----CC-CCC--ccCCCeEEEE-EC-CeEEEEcCCCCCCCCeEEEEeCCCCcEE
Q 011881 319 TNSWVEMPIGMG----EG-WPA--RQAGTKLSVV-LD-GELYAFDPSSSLNSAKIKVYDQKEDTWK 375 (475)
Q Consensus 319 ~~~W~~~~~~~~----~~-~p~--~~~~~~~~~~-~~-~~lyv~GG~~~~~~~~v~~yd~~~~~W~ 375 (475)
++....+..... .+ .+. .......+++ -+ +.|||.... .+.|.+||++++.-.
T Consensus 714 ~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~----n~~Irv~D~~tg~~~ 775 (1057)
T PLN02919 714 DGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE----SSSIRALDLKTGGSR 775 (1057)
T ss_pred CCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC----CCeEEEEECCCCcEE
Confidence 776554321100 00 000 0001111232 33 459998653 368999999876543
No 158
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=37.15 E-value=6.6e+02 Score=28.41 Aligned_cols=187 Identities=13% Similarity=0.102 Sum_probs=99.2
Q ss_pred CcceEEEEeCCCCcEEeCCCCCCccceeeeE---EEC--CEEEEEec-eecCCCCcccCCeEEEEeCCC-CCeEecCCCC
Q 011881 193 AMRCVRRYDPIANTWNEATSMSVGRAYCKTG---ILN--DKLYVVGG-VSRARGGLTPLQSAEVFDPTT-DAWSEVPSMP 265 (475)
Q Consensus 193 ~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~---~~~--~~iyv~GG-~~~~~~~~~~~~~~~~yd~~t-~~W~~~~~~p 265 (475)
.+..+-+||..|-+-...-.+...-...++. ..+ +..|++|- .............+.+|..+. ++-+.++.+.
T Consensus 748 ~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~ 827 (1096)
T KOG1897|consen 748 EVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV 827 (1096)
T ss_pred eEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee
Confidence 3556778888765543333332222222222 222 57888873 322222212234556665555 6666666654
Q ss_pred ccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeE---
Q 011881 266 FSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKL--- 342 (475)
Q Consensus 266 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~--- 342 (475)
..-+- .+.+.++|++.+-=| ..+..|+..+++=-.+.. ....+..
T Consensus 828 v~Gav---------------~aL~~fngkllA~In---------~~vrLye~t~~~eLr~e~--------~~~~~~~aL~ 875 (1096)
T KOG1897|consen 828 VKGAV---------------YALVEFNGKLLAGIN---------QSVRLYEWTTERELRIEC--------NISNPIIALD 875 (1096)
T ss_pred eccce---------------eehhhhCCeEEEecC---------cEEEEEEccccceehhhh--------cccCCeEEEE
Confidence 33222 567788998765211 223677766652222221 1111111
Q ss_pred EEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCC
Q 011881 343 SVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPR 421 (475)
Q Consensus 343 ~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~ 421 (475)
.-+.++.|+|-.=.. +-.+..|+...+...+++. --.++..-++..+++..|+ |++..-++.++.+|-+
T Consensus 876 l~v~gdeI~VgDlm~---Sitll~y~~~eg~f~evAr------D~~p~Wmtaveil~~d~yl-gae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 876 LQVKGDEIAVGDLMR---SITLLQYKGDEGNFEEVAR------DYNPNWMTAVEILDDDTYL-GAENSGNLFTVRKDSD 944 (1096)
T ss_pred EEecCcEEEEeeccc---eEEEEEEeccCCceEEeeh------hhCccceeeEEEecCceEE-eecccccEEEEEecCC
Confidence 234567777754321 2378889999988998863 2223333455567888775 5666667778887743
No 159
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=36.53 E-value=3.7e+02 Score=25.27 Aligned_cols=168 Identities=16% Similarity=0.111 Sum_probs=73.8
Q ss_pred ccceeEEEeCCEEEEEcCCCCCCCcceE--EEEeCC-----CCcEEeCCCC-CCccceeeeEEECCEEEEEeceecCCCC
Q 011881 170 FCGCAIGAVDGCLYVLGGFSRTSAMRCV--RRYDPI-----ANTWNEATSM-SVGRAYCKTGILNDKLYVVGGVSRARGG 241 (475)
Q Consensus 170 r~~~~~~~~~~~lyv~GG~~~~~~~~~~--~~yd~~-----t~~W~~~~~~-p~~R~~~~~~~~~~~iyv~GG~~~~~~~ 241 (475)
..-|+.+.+++.=|.+|=.+++..-..+ ..|... .-.=+.++.- ...-+.+++-.++++||+.---. ..
T Consensus 136 Te~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt---~~ 212 (367)
T PF12217_consen 136 TELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGT---LP 212 (367)
T ss_dssp SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES----T
T ss_pred eeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCc---CC
Confidence 3467888888888888755554332222 222111 1111223322 11223344556799999986322 12
Q ss_pred cccCCeEEEEeCCCCCeEecCCCC-ccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccce--------
Q 011881 242 LTPLQSAEVFDPTTDAWSEVPSMP-FSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGG-------- 312 (475)
Q Consensus 242 ~~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~-------- 312 (475)
...-..+.+-+..-..|+.+.-.. .-... .-.+..++.||+||-....+.- .+|
T Consensus 213 ~~~GS~L~rs~d~G~~w~slrfp~nvHhtn---------------lPFakvgD~l~mFgsERA~~EW--E~G~~D~RY~~ 275 (367)
T PF12217_consen 213 TNPGSSLHRSDDNGQNWSSLRFPNNVHHTN---------------LPFAKVGDVLYMFGSERAENEW--EGGEPDNRYRA 275 (367)
T ss_dssp TS---EEEEESSTTSS-EEEE-TT---SS------------------EEEETTEEEEEEE-SSTT-S--STT-----SS-
T ss_pred CCCcceeeeecccCCchhhccccccccccC---------------CCceeeCCEEEEEecccccccc--ccCCCcccccc
Confidence 223466777777778898763111 11112 3456789999999853221100 000
Q ss_pred -----E-------EEeCCCCceEEcCCCCCCC-CCCccCCCeEEEEECCeEE-EEcCCC
Q 011881 313 -----E-------IYDPDTNSWVEMPIGMGEG-WPARQAGTKLSVVLDGELY-AFDPSS 357 (475)
Q Consensus 313 -----~-------~yd~~~~~W~~~~~~~~~~-~p~~~~~~~~~~~~~~~ly-v~GG~~ 357 (475)
+ .+.++.-+|..+....-++ .-.+..|.+++++-+|-|| +|||++
T Consensus 276 ~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 276 NYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred cCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 1 1355566777665432221 1223445566778888875 568864
No 160
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=35.69 E-value=1.6e+02 Score=24.56 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=11.0
Q ss_pred CCeEEEEeCCCCC
Q 011881 245 LQSAEVFDPTTDA 257 (475)
Q Consensus 245 ~~~~~~yd~~t~~ 257 (475)
.+.+..||.+.|+
T Consensus 72 ~t~llaYDV~~N~ 84 (136)
T PF14781_consen 72 QTSLLAYDVENNS 84 (136)
T ss_pred cceEEEEEcccCc
Confidence 3689999999886
No 161
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=35.56 E-value=4.6e+02 Score=26.13 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=46.8
Q ss_pred eeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCC-----CCCc--cceeeeEEECCEEEEEeceecCCCC----
Q 011881 173 CAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATS-----MSVG--RAYCKTGILNDKLYVVGGVSRARGG---- 241 (475)
Q Consensus 173 ~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~-----~p~~--R~~~~~~~~~~~iyv~GG~~~~~~~---- 241 (475)
--++..+|++|++.- ...++.+|..- +-.++.+ +... +.....+...|+|+++.........
T Consensus 203 ~DIi~~kGkfYAvD~------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~ 275 (373)
T PLN03215 203 SDIIVHKGQTYALDS------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKA 275 (373)
T ss_pred eEEEEECCEEEEEcC------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEEEEEEEEccCccccccc
Confidence 456778999999831 13455555321 1112211 1111 1223466678899999875321100
Q ss_pred ----cccCC--eEEEEeCCCCCeEecCCCCc
Q 011881 242 ----LTPLQ--SAEVFDPTTDAWSEVPSMPF 266 (475)
Q Consensus 242 ----~~~~~--~~~~yd~~t~~W~~~~~~p~ 266 (475)
..... .++..|.+..+|.++..+..
T Consensus 276 ~~~~~~~t~~f~VfklD~~~~~WveV~sLgd 306 (373)
T PLN03215 276 DGFEYSRTVGFKVYKFDDELAKWMEVKTLGD 306 (373)
T ss_pred ccccccceeEEEEEEEcCCCCcEEEecccCC
Confidence 00122 34455888899999988753
No 162
>PRK01742 tolB translocation protein TolB; Provisional
Probab=35.48 E-value=4.8e+02 Score=26.35 Aligned_cols=18 Identities=17% Similarity=-0.049 Sum_probs=13.8
Q ss_pred ceEEEEeCCCCcEEeCCC
Q 011881 195 RCVRRYDPIANTWNEATS 212 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~ 212 (475)
.++|.+|+.+...+.+..
T Consensus 272 ~~Iy~~d~~~~~~~~lt~ 289 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTS 289 (429)
T ss_pred EEEEEEECCCCCeEeecc
Confidence 468999998888777643
No 163
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=34.90 E-value=4.5e+02 Score=25.76 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=77.1
Q ss_pred CCeEEEEeCCCCCeEecCCCCc-cccCCCCccccccccccceeeEEEeCCE-EEEeccCCCCCceeccceEEEeCCCCce
Q 011881 245 LQSAEVFDPTTDAWSEVPSMPF-SRAQGLPNAFFADMLKPIATGMTSYMGR-LCVPQSLYSWPFFVDVGGEIYDPDTNSW 322 (475)
Q Consensus 245 ~~~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W 322 (475)
.+.+..|+...+.-+...+... +-++.. |-+.--+++ .|++.-.++. +.++.||+...+.
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPR-------------Hi~FHpn~k~aY~v~EL~st-----V~v~~y~~~~g~~ 227 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPR-------------HIVFHPNGKYAYLVNELNST-----VDVLEYNPAVGKF 227 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcc-------------eEEEcCCCcEEEEEeccCCE-----EEEEEEcCCCceE
Confidence 4678888888766554432211 111110 333333444 4776543332 3447899988888
Q ss_pred EEcCCC--CCCCCCCccCCCeEEEEECC-eEEEEcCCCCCCCCeEEEE--eCCCCcEEEcCCcCccccCCCCCCCeEEEE
Q 011881 323 VEMPIG--MGEGWPARQAGTKLSVVLDG-ELYAFDPSSSLNSAKIKVY--DQKEDTWKVVIGKVPIRDFADSESPYLLSA 397 (475)
Q Consensus 323 ~~~~~~--~~~~~p~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~v~~y--d~~~~~W~~v~~~~p~~~~~~~r~~~~~~~ 397 (475)
+++... ++..+.....+.+.....+| .||+..= ..+.|.+| |+.+++-.-+. ..+.. ...+|. ....
T Consensus 228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR----g~dsI~~f~V~~~~g~L~~~~-~~~te-g~~PR~--F~i~ 299 (346)
T COG2706 228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR----GHDSIAVFSVDPDGGKLELVG-ITPTE-GQFPRD--FNIN 299 (346)
T ss_pred EEeeeeccCccccCCCCceeEEEECCCCCEEEEecC----CCCeEEEEEEcCCCCEEEEEE-EeccC-CcCCcc--ceeC
Confidence 887652 33333333333221222344 4666531 12466666 45555433332 11111 122343 2334
Q ss_pred eCCeEEEEeecCCCCeeEEEecCCC
Q 011881 398 FHGKLHVLTKDASRNISILRADPRD 422 (475)
Q Consensus 398 ~~~~l~v~GG~~~~~~~v~~~d~~~ 422 (475)
-+++++++-+...+++.+...|..+
T Consensus 300 ~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 300 PSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred CCCCEEEEEccCCCcEEEEEEcCCC
Confidence 5677777777777777777776654
No 164
>PF13013 F-box-like_2: F-box-like domain
Probab=32.57 E-value=71 Score=25.58 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHhccCChhhhHHHHHhhh
Q 011881 43 IPSLPDELSIQILARVPRIFYLNLRAVSR 71 (475)
Q Consensus 43 ~~~LP~dl~~~iL~~lp~~~l~~l~~vck 71 (475)
+..||+||+..|+..-....+..+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 66799999999999888777777666555
No 165
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=32.37 E-value=5.1e+02 Score=25.64 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=19.6
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEe
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNE 209 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~ 209 (475)
-+..|||. +....+.+-+.|..+++-..
T Consensus 115 dgk~l~V~----n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 115 DNKTLLFY----QFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCCEEEEe----cCCCCCEEEEEECCCCcEEE
Confidence 34568876 33446789999999887654
No 166
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=32.30 E-value=5.9e+02 Score=26.39 Aligned_cols=168 Identities=11% Similarity=0.079 Sum_probs=81.1
Q ss_pred eEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCc-cccCCC
Q 011881 196 CVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPF-SRAQGL 272 (475)
Q Consensus 196 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~~ 272 (475)
.++.+|-.+..-+.+.++. +...+.+.. +|...++|=. ...+++||.++.+ .+..|.. ....
T Consensus 198 ~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~---------~g~v~iwD~~~~k--~~~~~~~~h~~r-- 262 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTS---------DGTVQIWDVKEQK--KTRTLRGSHASR-- 262 (484)
T ss_pred eEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeec---------CCeEEEEehhhcc--ccccccCCcCce--
Confidence 4444444444444444443 444455544 4677777643 3578899987654 2222322 1111
Q ss_pred CccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEE
Q 011881 273 PNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYA 352 (475)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv 352 (475)
.++...++.+...|..++. ...+|.....=. +.. +.. ..+.-++..-..++..+.
T Consensus 263 -------------vg~laW~~~~lssGsr~~~-------I~~~dvR~~~~~-~~~-~~~---H~qeVCgLkws~d~~~lA 317 (484)
T KOG0305|consen 263 -------------VGSLAWNSSVLSSGSRDGK-------ILNHDVRISQHV-VST-LQG---HRQEVCGLKWSPDGNQLA 317 (484)
T ss_pred -------------eEEEeccCceEEEecCCCc-------EEEEEEecchhh-hhh-hhc---ccceeeeeEECCCCCeec
Confidence 3455667888887776543 144454321100 000 000 011111112234666666
Q ss_pred EcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCC
Q 011881 353 FDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRN 412 (475)
Q Consensus 353 ~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~ 412 (475)
-||. .+.+.+||.....+..--. .....-...+.+.....|+..||+..++
T Consensus 318 SGgn----DN~~~Iwd~~~~~p~~~~~-----~H~aAVKA~awcP~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 318 SGGN----DNVVFIWDGLSPEPKFTFT-----EHTAAVKALAWCPWQSGLLATGGGSADR 368 (484)
T ss_pred cCCC----ccceEeccCCCccccEEEe-----ccceeeeEeeeCCCccCceEEcCCCccc
Confidence 6773 4678888873332221100 0111122234445678888888877664
No 167
>PRK10115 protease 2; Provisional
Probab=31.55 E-value=7.2e+02 Score=27.15 Aligned_cols=153 Identities=11% Similarity=-0.016 Sum_probs=74.0
Q ss_pred cceEEEEeC--CCCcEE-eCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCC-CCCeEecCCCCcccc
Q 011881 194 MRCVRRYDP--IANTWN-EATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPT-TDAWSEVPSMPFSRA 269 (475)
Q Consensus 194 ~~~~~~yd~--~t~~W~-~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~-t~~W~~~~~~p~~r~ 269 (475)
.+.++.|+. .+..|. .++.-....+ .....++.+|+.--.. .....+...+.. ++.|+.+-+......
T Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ly~~tn~~------~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 317 (686)
T PRK10115 246 TSEVLLLDAELADAEPFVFLPRRKDHEY--SLDHYQHRFYLRSNRH------GKNFGLYRTRVRDEQQWEELIPPRENIM 317 (686)
T ss_pred cccEEEEECcCCCCCceEEEECCCCCEE--EEEeCCCEEEEEEcCC------CCCceEEEecCCCcccCeEEECCCCCCE
Confidence 456777773 234443 3322222222 2334568888875321 123456666776 578988754321111
Q ss_pred CCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEEC-C
Q 011881 270 QGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLD-G 348 (475)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~-~ 348 (475)
- -.+...++.|++..-.++.. ...++|..++....+.-.. |............+ +
T Consensus 318 i---------------~~~~~~~~~l~~~~~~~g~~-----~l~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~ 373 (686)
T PRK10115 318 L---------------EGFTLFTDWLVVEERQRGLT-----SLRQINRKTREVIGIAFDD----PAYVTWIAYNPEPETS 373 (686)
T ss_pred E---------------EEEEEECCEEEEEEEeCCEE-----EEEEEcCCCCceEEecCCC----CceEeeecccCCCCCc
Confidence 1 33445577777643222211 1267777666665544101 11100000000012 3
Q ss_pred eEEEEcCCCCCCCCeEEEEeCCCCcEEEcCC
Q 011881 349 ELYAFDPSSSLNSAKIKVYDQKEDTWKVVIG 379 (475)
Q Consensus 349 ~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~ 379 (475)
.+++. -.+......++.||+.+++|+.+..
T Consensus 374 ~~~~~-~ss~~~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 374 RLRYG-YSSMTTPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred eEEEE-EecCCCCCEEEEEECCCCcEEEEEe
Confidence 33332 2222234699999999999988753
No 168
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=30.41 E-value=1.7e+02 Score=27.75 Aligned_cols=60 Identities=27% Similarity=0.481 Sum_probs=37.5
Q ss_pred CCeEEEEeCCCCCeEecCCCCc--cccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCce
Q 011881 245 LQSAEVFDPTTDAWSEVPSMPF--SRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSW 322 (475)
Q Consensus 245 ~~~~~~yd~~t~~W~~~~~~p~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 322 (475)
...+++|||.+.+|.+-+ +|. +|.. ..-+--.+++++.-- ......+||+++.+.
T Consensus 253 ~g~l~rfdPs~~sW~eyp-LPgs~arpy---------------s~rVD~~grVW~sea-------~agai~rfdpeta~f 309 (353)
T COG4257 253 TGSLHRFDPSVTSWIEYP-LPGSKARPY---------------SMRVDRHGRVWLSEA-------DAGAIGRFDPETARF 309 (353)
T ss_pred CceeeEeCcccccceeee-CCCCCCCcc---------------eeeeccCCcEEeecc-------ccCceeecCcccceE
Confidence 357899999999999764 332 2332 222333466666210 001127999999999
Q ss_pred EEcCC
Q 011881 323 VEMPI 327 (475)
Q Consensus 323 ~~~~~ 327 (475)
+.++.
T Consensus 310 tv~p~ 314 (353)
T COG4257 310 TVLPI 314 (353)
T ss_pred EEecC
Confidence 99875
No 169
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=29.85 E-value=3.6e+02 Score=27.95 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=37.9
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++...++||.++ .+.+|.+....-....-+...|...+.+.+ +++.++.|-. ...+..||.+++
T Consensus 454 ~~~~vaVGG~Dg-----kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da---------~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 454 DGSEVAVGGQDG-----KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA---------SRKVVLYDVASR 519 (603)
T ss_pred CCCEEEEecccc-----eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc---------CCcEEEEEcccC
Confidence 455666677554 477787776554444334444555555555 5565555532 457777877665
Q ss_pred C
Q 011881 257 A 257 (475)
Q Consensus 257 ~ 257 (475)
.
T Consensus 520 ~ 520 (603)
T KOG0318|consen 520 E 520 (603)
T ss_pred c
Confidence 4
No 170
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=29.44 E-value=6.1e+02 Score=25.68 Aligned_cols=117 Identities=14% Similarity=0.158 Sum_probs=60.7
Q ss_pred eeEEEe-CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEE
Q 011881 173 CAIGAV-DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEV 250 (475)
Q Consensus 173 ~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~ 250 (475)
.+++.+ +|.|+..|-.+ ..+-+||..... .++.+|.--.-.....+ ++--|+.-+.+ -..+..
T Consensus 351 ts~~fHpDgLifgtgt~d-----~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~ad--------d~~V~l 415 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTPD-----GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAAD--------DGSVKL 415 (506)
T ss_pred EEeeEcCCceEEeccCCC-----ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEec--------CCeEEE
Confidence 344444 56666665432 367788988776 55555542222223333 33344444442 134888
Q ss_pred EeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCC
Q 011881 251 FDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPI 327 (475)
Q Consensus 251 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~ 327 (475)
+|+.+.+ .++.++.+-... .....+ .|...+++|.+ +.++.|+-.+..|+++..
T Consensus 416 wDLRKl~--n~kt~~l~~~~~--------------v~s~~fD~SGt~L~~~g~~-------l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 416 WDLRKLK--NFKTIQLDEKKE--------------VNSLSFDQSGTYLGIAGSD-------LQVYICKKKTKSWTEIKE 471 (506)
T ss_pred EEehhhc--ccceeecccccc--------------ceeEEEcCCCCeEEeecce-------eEEEEEecccccceeeeh
Confidence 9998765 222222111100 112222 24445555422 444788999999999875
No 171
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.16 E-value=4.5e+02 Score=23.99 Aligned_cols=192 Identities=17% Similarity=0.182 Sum_probs=97.7
Q ss_pred eeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCc-cceeeeEEECCEEEEEeceecCCCCcccCCeEEEE
Q 011881 173 CAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVG-RAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVF 251 (475)
Q Consensus 173 ~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~y 251 (475)
.++...+|+||.--|.-+ .+.+.++|+.+.+=..-.+++.+ -.+-..+.+++.+|+.-=. ....++|
T Consensus 49 QGL~~~~g~i~esTG~yg---~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~---------egvaf~~ 116 (262)
T COG3823 49 QGLEYLDGHILESTGLYG---FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWK---------EGVAFKY 116 (262)
T ss_pred cceeeeCCEEEEeccccc---cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEec---------cceeEEE
Confidence 355667888888766544 36889999987663222223323 3556778889999998521 2356778
Q ss_pred eCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEE-cCCCCC
Q 011881 252 DPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE-MPIGMG 330 (475)
Q Consensus 252 d~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~ 330 (475)
|+.+ .+.+...+.+-.+ -+.+.-+..|..-.|... . ..-||++-.=.. +.. -.
T Consensus 117 d~~t--~~~lg~~~y~GeG---------------WgLt~d~~~LimsdGsat------L--~frdP~tfa~~~~v~V-T~ 170 (262)
T COG3823 117 DADT--LEELGRFSYEGEG---------------WGLTSDDKNLIMSDGSAT------L--QFRDPKTFAELDTVQV-TD 170 (262)
T ss_pred ChHH--hhhhcccccCCcc---------------eeeecCCcceEeeCCceE------E--EecCHHHhhhcceEEE-EE
Confidence 8765 3344444444443 455555555555333211 1 333554322110 100 00
Q ss_pred CCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc---EEEcCCcCccccCCCCC----CCeEEEEeCCeEE
Q 011881 331 EGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT---WKVVIGKVPIRDFADSE----SPYLLSAFHGKLH 403 (475)
Q Consensus 331 ~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~---W~~v~~~~p~~~~~~~r----~~~~~~~~~~~l~ 403 (475)
.+.|..... -.-.++|.+|.= -...+.|.+-||++++ |..+.+..+.......+ .+.+.-.-.+++|
T Consensus 171 ~g~pv~~LN--ELE~VdG~lyAN----Vw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~ 244 (262)
T COG3823 171 DGVPVSKLN--ELEWVDGELYAN----VWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFL 244 (262)
T ss_pred CCeeccccc--ceeeeccEEEEe----eeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEE
Confidence 011111100 022345555541 1123678889999874 99886544422221111 1222333467888
Q ss_pred EEeec
Q 011881 404 VLTKD 408 (475)
Q Consensus 404 v~GG~ 408 (475)
|.|..
T Consensus 245 iTGK~ 249 (262)
T COG3823 245 ITGKL 249 (262)
T ss_pred EecCc
Confidence 87754
No 172
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=28.32 E-value=6.6e+02 Score=25.70 Aligned_cols=66 Identities=20% Similarity=0.088 Sum_probs=39.2
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCe
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAW 258 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 258 (475)
.+.+++.|+.++ .+.++|..+.+-...=.............-++.+++.+.+ ...+.+||..+..=
T Consensus 257 ~g~~i~Sgs~D~-----tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---------d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 257 DGNLLVSGSDDG-----TVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---------DGTIRVWDLETGSK 322 (456)
T ss_pred CCCEEEEecCCC-----cEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---------CccEEEEECCCCce
Confidence 457888887654 6788888885443321212211111122236677777754 25789999998873
No 173
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=27.70 E-value=6.2e+02 Score=25.18 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=47.2
Q ss_pred EEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCC---------
Q 011881 289 TSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSL--------- 359 (475)
Q Consensus 289 ~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~--------- 359 (475)
-..+|.+||.-.+ .|.+.-+++.+.=+.+.+ ...+.|......- -+.-+|.||....+...
T Consensus 123 ~~~ggdL~VaDAY--------lGL~~V~p~g~~a~~l~~-~~~G~~~kf~N~l-dI~~~g~vyFTDSSsk~~~rd~~~a~ 192 (376)
T KOG1520|consen 123 DKKGGDLYVADAY--------LGLLKVGPEGGLAELLAD-EAEGKPFKFLNDL-DIDPEGVVYFTDSSSKYDRRDFVFAA 192 (376)
T ss_pred ccCCCeEEEEecc--------eeeEEECCCCCcceeccc-cccCeeeeecCce-eEcCCCeEEEeccccccchhheEEee
Confidence 3456699997654 355788888888555554 3333333322221 22236777777654311
Q ss_pred ----CCCeEEEEeCCCCcEEEcCC
Q 011881 360 ----NSAKIKVYDQKEDTWKVVIG 379 (475)
Q Consensus 360 ----~~~~v~~yd~~~~~W~~v~~ 379 (475)
....+..||+.++.=+.+..
T Consensus 193 l~g~~~GRl~~YD~~tK~~~VLld 216 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTKVTKVLLD 216 (376)
T ss_pred ecCCCccceEEecCcccchhhhhh
Confidence 23579999999987665533
No 174
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.14 E-value=5.4e+02 Score=24.01 Aligned_cols=47 Identities=13% Similarity=0.263 Sum_probs=26.8
Q ss_pred EEEEEcCCCCCCCcceEEEEeCCCCcEEeC----------------CCCCCccceeeeEEECCEEEEE
Q 011881 181 CLYVLGGFSRTSAMRCVRRYDPIANTWNEA----------------TSMSVGRAYCKTGILNDKLYVV 232 (475)
Q Consensus 181 ~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~----------------~~~p~~R~~~~~~~~~~~iyv~ 232 (475)
+=++-||+++ +-.+|.||-. +|..- |....++...+.+.-+++++++
T Consensus 176 krlvSgGcDn---~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 176 KRLVSGGCDN---LVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred ceeeccCCcc---ceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 3467788765 3456666553 55321 3344566666666666666665
No 175
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=25.65 E-value=7.3e+02 Score=25.30 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=19.7
Q ss_pred EEEECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 343 SVVLDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 343 ~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
+...+|.+.+.|+.+ +.+-++|+.+.+
T Consensus 284 ais~DgtlLlSGd~d----g~VcvWdi~S~Q 310 (476)
T KOG0646|consen 284 AISTDGTLLLSGDED----GKVCVWDIYSKQ 310 (476)
T ss_pred EEecCccEEEeeCCC----CCEEEEecchHH
Confidence 456799999999854 457777776654
No 176
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.63 E-value=6.2e+02 Score=24.46 Aligned_cols=122 Identities=14% Similarity=0.053 Sum_probs=0.0
Q ss_pred CCCccceeEEEeC--CEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCcc--ceeeeEEECCEEEEEeceecCCCCc
Q 011881 167 QMPFCGCAIGAVD--GCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGR--AYCKTGILNDKLYVVGGVSRARGGL 242 (475)
Q Consensus 167 p~pr~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R--~~~~~~~~~~~iyv~GG~~~~~~~~ 242 (475)
|+|--.|.+++.- ..+.+|+-..+. .+.+||+.+.+=...-..+..| ++|++..-++++...--. +..
T Consensus 2 ~lP~RgH~~a~~p~~~~avafaRRPG~----~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEn----d~~ 73 (305)
T PF07433_consen 2 PLPARGHGVAAHPTRPEAVAFARRPGT----FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEN----DYE 73 (305)
T ss_pred CCCccccceeeCCCCCeEEEEEeCCCc----EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecc----ccC
Q ss_pred ccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCE-EEEeccCCCCCceeccceEEEeCCCCc
Q 011881 243 TPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGR-LCVPQSLYSWPFFVDVGGEIYDPDTNS 321 (475)
Q Consensus 243 ~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~ 321 (475)
...-.+-+||.. +..+++...+..--+. |-+....+. -.|++ +||-.-+|++++
T Consensus 74 ~g~G~IgVyd~~-~~~~ri~E~~s~GIGP--------------Hel~l~pDG~tLvVA----------NGGI~Thpd~GR 128 (305)
T PF07433_consen 74 TGRGVIGVYDAA-RGYRRIGEFPSHGIGP--------------HELLLMPDGETLVVA----------NGGIETHPDSGR 128 (305)
T ss_pred CCcEEEEEEECc-CCcEEEeEecCCCcCh--------------hhEEEcCCCCEEEEE----------cCCCccCcccCc
No 177
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=25.20 E-value=5.6e+02 Score=23.88 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=44.6
Q ss_pred CCCCcccee-EEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCc
Q 011881 166 PQMPFCGCA-IGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGL 242 (475)
Q Consensus 166 ~p~pr~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~ 242 (475)
.++|-...- +.-..|.|+..||- ..++..|+.+.+-++.-.-. .-+-|+++.- ++. ++.|+.+
T Consensus 112 ~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~rGH-tDYvH~vv~R~~~~q-ilsG~ED------ 177 (325)
T KOG0649|consen 112 VEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREYRGH-TDYVHSVVGRNANGQ-ILSGAED------ 177 (325)
T ss_pred ccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEEcCC-cceeeeeeecccCcc-eeecCCC------
Confidence 345543332 23356888888872 47888999998877542111 1133444432 233 3345442
Q ss_pred ccCCeEEEEeCCCCCeEec
Q 011881 243 TPLQSAEVFDPTTDAWSEV 261 (475)
Q Consensus 243 ~~~~~~~~yd~~t~~W~~~ 261 (475)
..+.++|.+|.+=.++
T Consensus 178 ---GtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 178 ---GTVRVWDTKTQKHVSM 193 (325)
T ss_pred ---ccEEEEeccccceeEE
Confidence 4678889988875543
No 178
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=24.69 E-value=5.7e+02 Score=23.78 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=26.9
Q ss_pred CCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCC---cEEEcC
Q 011881 334 PARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKED---TWKVVI 378 (475)
Q Consensus 334 p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~---~W~~v~ 378 (475)
|..-.|.+ -++++|.+|.-.. ....|..||+++. .|..++
T Consensus 65 p~~~~gTg-~VVynGs~yynk~----~t~~ivky~l~~~~~~~~~~lp 107 (249)
T KOG3545|consen 65 PYSWDGTG-HVVYNGSLYYNKA----GTRNIIKYDLETRTVAGSAALP 107 (249)
T ss_pred CCCccccc-eEEEcceEEeecc----CCcceEEEEeecceeeeeeecc
Confidence 44445554 5888999888764 3467999999884 355553
No 179
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=22.91 E-value=6.3e+02 Score=23.65 Aligned_cols=55 Identities=18% Similarity=0.058 Sum_probs=31.0
Q ss_pred eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCC
Q 011881 291 YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSS 357 (475)
Q Consensus 291 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~ 357 (475)
-+..+||.||.+.+ .++||..|+.=...- ..+-+.+. ++.-..-+|.+|..|-.+
T Consensus 234 P~k~~fVaGged~~-------~~kfDy~TgeEi~~~---nkgh~gpV--hcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 234 PKKEFFVAGGEDFK-------VYKFDYNTGEEIGSY---NKGHFGPV--HCVRFSPDGELYASGSED 288 (334)
T ss_pred CCCceEEecCcceE-------EEEEeccCCceeeec---ccCCCCce--EEEEECCCCceeeccCCC
Confidence 35579999997643 377888776533221 11101111 221234589999998754
No 180
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=22.76 E-value=3.5e+02 Score=20.70 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCC-------------CCCeEEEEeCCCCcEEEcCC
Q 011881 348 GELYAFDPSSSL-------------NSAKIKVYDQKEDTWKVVIG 379 (475)
Q Consensus 348 ~~lyv~GG~~~~-------------~~~~v~~yd~~~~~W~~v~~ 379 (475)
|.||+...+... ....++.|||.+++.+.+..
T Consensus 10 g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~ 54 (89)
T PF03088_consen 10 GTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD 54 (89)
T ss_dssp --EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE
T ss_pred CEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh
Confidence 678877654321 22589999999999988754
No 181
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=22.13 E-value=5.4e+02 Score=25.01 Aligned_cols=99 Identities=18% Similarity=0.269 Sum_probs=57.6
Q ss_pred eeEEEeCCEE-EEe--ccC---CCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCC
Q 011881 286 TGMTSYMGRL-CVP--QSL---YSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSL 359 (475)
Q Consensus 286 ~~~~~~~~~i-yv~--GG~---~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~ 359 (475)
.+++..+|+. ||. |-. .+|......||.+.|..+|+= +...+.. |.. --.++|+||+..-
T Consensus 155 NGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~ev--l~~GLsm--PhS------PRWhdgrLwvlds---- 220 (335)
T TIGR03032 155 NGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEV--VASGLSM--PHS------PRWYQGKLWLLNS---- 220 (335)
T ss_pred cceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCE--EEcCccC--CcC------CcEeCCeEEEEEC----
Confidence 4667777774 432 221 234333335677888888843 3222221 111 2468999999853
Q ss_pred CCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEee
Q 011881 360 NSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTK 407 (475)
Q Consensus 360 ~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG 407 (475)
....+..+|+++++.+.+. .+| .++ .++... |.+.++|-
T Consensus 221 gtGev~~vD~~~G~~e~Va-~vp--G~~-----rGL~f~-G~llvVgm 259 (335)
T TIGR03032 221 GRGELGYVDPQAGKFQPVA-FLP--GFT-----RGLAFA-GDFAFVGL 259 (335)
T ss_pred CCCEEEEEcCCCCcEEEEE-ECC--CCC-----ccccee-CCEEEEEe
Confidence 2358999999999999884 333 122 234444 66666664
No 182
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=21.76 E-value=2.6e+02 Score=29.75 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=41.5
Q ss_pred EeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeC--------CCCC-Cccce-eeeEEE-CCEEEEEeceecCCCCcccC
Q 011881 177 AVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEA--------TSMS-VGRAY-CKTGIL-NDKLYVVGGVSRARGGLTPL 245 (475)
Q Consensus 177 ~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~--------~~~p-~~R~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~ 245 (475)
+-++.+++-||.+. .+++||..+..=+.+ .+++ .++.. ++.+.- .+.++|-||. .
T Consensus 127 ak~~~lvaSgGLD~-----~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt---------e 192 (735)
T KOG0308|consen 127 AKNNELVASGGLDR-----KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT---------E 192 (735)
T ss_pred ccCceeEEecCCCc-----cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc---------c
Confidence 45788999999865 567777765532222 2344 33432 233332 3568888886 3
Q ss_pred CeEEEEeCCCCC
Q 011881 246 QSAEVFDPTTDA 257 (475)
Q Consensus 246 ~~~~~yd~~t~~ 257 (475)
+++..|||.+.+
T Consensus 193 k~lr~wDprt~~ 204 (735)
T KOG0308|consen 193 KDLRLWDPRTCK 204 (735)
T ss_pred cceEEecccccc
Confidence 688999998864
No 183
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=21.08 E-value=1e+03 Score=25.48 Aligned_cols=157 Identities=15% Similarity=0.155 Sum_probs=83.0
Q ss_pred EeCCEEEEEcCCCCCCCcceEEEEeCCCC-cEEeCCCCCCccceeeeEE---ECCEEEEEeceecCCCCcccCCeEEEEe
Q 011881 177 AVDGCLYVLGGFSRTSAMRCVRRYDPIAN-TWNEATSMSVGRAYCKTGI---LNDKLYVVGGVSRARGGLTPLQSAEVFD 252 (475)
Q Consensus 177 ~~~~~lyv~GG~~~~~~~~~~~~yd~~t~-~W~~~~~~p~~R~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~~yd 252 (475)
.-++.+.++|-.. ...+++..+.-+ +=+.+..+|..+...+... -++++++.- . ...+++.++
T Consensus 391 SPdg~~Ia~st~~----~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s-~--------~~~~le~~e 457 (691)
T KOG2048|consen 391 SPDGNLIAISTVS----RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS-K--------NIFSLEEFE 457 (691)
T ss_pred CCCCCEEEEeecc----ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe-c--------ccceeEEEE
Confidence 3345555554321 123444444332 3445567777765444333 367777765 1 246788899
Q ss_pred CCCCCeEecCCCCcc-ccCCCCccccccccccceeeE-EEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCC
Q 011881 253 PTTDAWSEVPSMPFS-RAQGLPNAFFADMLKPIATGM-TSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMG 330 (475)
Q Consensus 253 ~~t~~W~~~~~~p~~-r~~~~~~~~~~~~~~~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 330 (475)
.++.+-+++.+.... ... ++.+-+ ...++.|-+.++.. ..++||+++.+-..+...+.
T Consensus 458 l~~ps~kel~~~~~~~~~~------------~I~~l~~SsdG~yiaa~~t~g--------~I~v~nl~~~~~~~l~~rln 517 (691)
T KOG2048|consen 458 LETPSFKELKSIQSQAKCP------------SISRLVVSSDGNYIAAISTRG--------QIFVYNLETLESHLLKVRLN 517 (691)
T ss_pred ecCcchhhhhccccccCCC------------cceeEEEcCCCCEEEEEeccc--------eEEEEEcccceeecchhccC
Confidence 988888776543221 111 111222 24566677766432 23899999988776653221
Q ss_pred CCCCCccCCCeEE--EEECCeEEEEcCCCCCCCCeEEEEeCCC---CcEEEc
Q 011881 331 EGWPARQAGTKLS--VVLDGELYAFDPSSSLNSAKIKVYDQKE---DTWKVV 377 (475)
Q Consensus 331 ~~~p~~~~~~~~~--~~~~~~lyv~GG~~~~~~~~v~~yd~~~---~~W~~v 377 (475)
....+++ ....++|.|..- .+.++.||.+. .+|.+.
T Consensus 518 ------~~vTa~~~~~~~~~~lvvats-----~nQv~efdi~~~~l~~ws~~ 558 (691)
T KOG2048|consen 518 ------IDVTAAAFSPFVRNRLVVATS-----NNQVFEFDIEARNLTRWSKN 558 (691)
T ss_pred ------cceeeeeccccccCcEEEEec-----CCeEEEEecchhhhhhhhhc
Confidence 1111111 123455666532 36888999853 346654
No 184
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=20.79 E-value=5.3e+02 Score=21.92 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=43.2
Q ss_pred EEeCCEEEEeccCCCCCceeccceEEEeCCCCce-EEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEE
Q 011881 289 TSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSW-VEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVY 367 (475)
Q Consensus 289 ~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~y 367 (475)
+.++|.+|=+.......... -...||+.+.+. ..++.|... ..........++.+++|-++--......-+||+.
T Consensus 2 V~vnG~~hW~~~~~~~~~~~--~IlsFDl~~E~F~~~~~lP~~~--~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm 77 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKD--FILSFDLSTEKFGRSLPLPFCN--DDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVM 77 (164)
T ss_pred EEECCEEEeeEEecCCCCce--EEEEEeccccccCCEECCCCcc--CccCCEEEEEEecCCEEEEEEeccCCccEEEEEE
Confidence 34566666544322221110 127899999999 666543221 1011111112334778877743222222477776
Q ss_pred eC---CCCcEEEc
Q 011881 368 DQ---KEDTWKVV 377 (475)
Q Consensus 368 d~---~~~~W~~v 377 (475)
+- ...+|+++
T Consensus 78 ~~~~~~~~SWtK~ 90 (164)
T PF07734_consen 78 KKYGYGKESWTKL 90 (164)
T ss_pred eeeccCcceEEEE
Confidence 62 36789986
No 185
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=20.50 E-value=9.8e+02 Score=24.93 Aligned_cols=123 Identities=20% Similarity=0.293 Sum_probs=63.2
Q ss_pred CccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeC
Q 011881 215 VGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYM 292 (475)
Q Consensus 215 ~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~ 292 (475)
..|...+.|.+ ++++ +.+|+. + .++..+|. ..|..-+.+-...+. .++. .|..-....+
T Consensus 315 g~Rv~~tsC~~nrdg~~-iAagc~---D-----GSIQ~W~~--~~~~v~p~~~vk~AH-~~g~-------~Itsi~FS~d 375 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKL-IAAGCL---D-----GSIQIWDK--GSRTVRPVMKVKDAH-LPGQ-------DITSISFSYD 375 (641)
T ss_pred CcccCceeeecCCCcch-hhhccc---C-----Cceeeeec--CCcccccceEeeecc-CCCC-------ceeEEEeccc
Confidence 45666666666 4666 666664 2 35666665 445544443322111 1100 0112234567
Q ss_pred CEEEEeccCCCCCceeccceEEEeCCC-----CceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCC--CCCCCeEE
Q 011881 293 GRLCVPQSLYSWPFFVDVGGEIYDPDT-----NSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSS--SLNSAKIK 365 (475)
Q Consensus 293 ~~iyv~GG~~~~~~~~~~~~~~yd~~~-----~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~--~~~~~~v~ 365 (475)
|++.+--|+++. . -++|+.. +.|+-++. +..+.-++..-+.+|++.|-.. +.....++
T Consensus 376 g~~LlSRg~D~t-----L--KvWDLrq~kkpL~~~tgL~t--------~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~ 440 (641)
T KOG0772|consen 376 GNYLLSRGFDDT-----L--KVWDLRQFKKPLNVRTGLPT--------PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLF 440 (641)
T ss_pred cchhhhccCCCc-----e--eeeeccccccchhhhcCCCc--------cCCCCccccCCCceEEEecccccCCCCCceEE
Confidence 777776555542 1 3445443 34554444 2223333566788888887642 22235788
Q ss_pred EEeCCC
Q 011881 366 VYDQKE 371 (475)
Q Consensus 366 ~yd~~~ 371 (475)
.||..+
T Consensus 441 f~d~~t 446 (641)
T KOG0772|consen 441 FFDRMT 446 (641)
T ss_pred EEeccc
Confidence 998765
No 186
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=20.35 E-value=5.7e+02 Score=22.74 Aligned_cols=64 Identities=13% Similarity=0.210 Sum_probs=0.0
Q ss_pred CEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCe--EEEEcCCCCCCC--CeEEEEe
Q 011881 293 GRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGE--LYAFDPSSSLNS--AKIKVYD 368 (475)
Q Consensus 293 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~--lyv~GG~~~~~~--~~v~~yd 368 (475)
|+||+ +|..++.|..+.......--.|.. +..+++. ++|+|...+... ..+++|+
T Consensus 88 GkIYI-----------------kn~~~~~~~~L~i~~~~~k~sPK~----i~WiDD~~L~vIIG~a~GTvS~GGnLy~~n 146 (200)
T PF15525_consen 88 GKIYI-----------------KNLNNNNWWSLQIDQNEEKYSPKY----IEWIDDNNLAVIIGYAHGTVSKGGNLYKYN 146 (200)
T ss_pred eeEEE-----------------EecCCCceEEEEecCcccccCCce----eEEecCCcEEEEEccccceEccCCeEEEEE
Q ss_pred CCCCcEEEc
Q 011881 369 QKEDTWKVV 377 (475)
Q Consensus 369 ~~~~~W~~v 377 (475)
+.++.=+.+
T Consensus 147 l~tg~~~~l 155 (200)
T PF15525_consen 147 LNTGNLTEL 155 (200)
T ss_pred ccCCceeEe
No 187
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=20.29 E-value=4e+02 Score=26.09 Aligned_cols=80 Identities=10% Similarity=0.052 Sum_probs=49.6
Q ss_pred eEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCcc
Q 011881 196 CVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNA 275 (475)
Q Consensus 196 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~ 275 (475)
.+-++|..|....+ .+..-+.+-++..+++++.|.|.. -+++..||.+.+.--.+-.-....
T Consensus 341 TikvW~~st~efvR--tl~gHkRGIAClQYr~rlvVSGSS---------DntIRlwdi~~G~cLRvLeGHEeL------- 402 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVR--TLNGHKRGIACLQYRDRLVVSGSS---------DNTIRLWDIECGACLRVLEGHEEL------- 402 (499)
T ss_pred eEEEEeccceeeeh--hhhcccccceehhccCeEEEecCC---------CceEEEEeccccHHHHHHhchHHh-------
Confidence 45556666655433 233445566788899999998864 368889999887644332111111
Q ss_pred ccccccccceeeEEEeCCEEEEeccCCC
Q 011881 276 FFADMLKPIATGMTSYMGRLCVPQSLYS 303 (475)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~iyv~GG~~~ 303 (475)
.-+.-++++-.|-||+++
T Consensus 403 ----------vRciRFd~krIVSGaYDG 420 (499)
T KOG0281|consen 403 ----------VRCIRFDNKRIVSGAYDG 420 (499)
T ss_pred ----------hhheeecCceeeeccccc
Confidence 224567888888787665
Done!