Query 011881
Match_columns 475
No_of_seqs 467 out of 3086
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 17:13:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zgk_A Kelch-like ECH-associat 100.0 6.1E-44 2.1E-48 346.2 33.0 279 87-466 18-302 (308)
2 2xn4_A Kelch-like protein 2; s 100.0 1.2E-43 4.1E-48 343.0 34.2 275 92-465 14-291 (302)
3 3ii7_A Kelch-like protein 7; p 100.0 1.1E-43 3.6E-48 344.0 32.8 272 93-466 11-287 (306)
4 2vpj_A Kelch-like protein 12; 100.0 5.9E-43 2E-47 337.9 32.7 273 92-465 13-292 (301)
5 4asc_A Kelch repeat and BTB do 100.0 3.8E-41 1.3E-45 327.6 32.1 283 93-468 4-295 (315)
6 2woz_A Kelch repeat and BTB do 100.0 7.1E-41 2.4E-45 326.1 28.5 288 92-473 14-310 (318)
7 2uvk_A YJHT; unknown function, 100.0 9.3E-40 3.2E-44 323.3 23.1 278 92-462 18-353 (357)
8 2xn4_A Kelch-like protein 2; s 100.0 5.6E-39 1.9E-43 310.2 27.6 260 69-402 38-302 (302)
9 4asc_A Kelch repeat and BTB do 100.0 1.8E-39 6.2E-44 315.7 21.1 262 70-407 22-305 (315)
10 2woz_A Kelch repeat and BTB do 100.0 3.5E-39 1.2E-43 314.1 22.5 263 69-406 32-314 (318)
11 1zgk_A Kelch-like ECH-associat 100.0 4.4E-38 1.5E-42 304.9 26.8 256 66-398 44-308 (308)
12 3ii7_A Kelch-like protein 7; p 100.0 2.8E-38 9.5E-43 305.9 24.9 262 69-401 32-296 (306)
13 2vpj_A Kelch-like protein 12; 100.0 1.4E-37 4.9E-42 300.1 25.0 256 69-399 39-300 (301)
14 2uvk_A YJHT; unknown function, 100.0 6.6E-35 2.2E-39 288.5 27.8 259 167-465 7-308 (357)
15 2zwa_A Leucine carboxyl methyl 100.0 9E-34 3.1E-38 303.3 23.1 251 92-409 396-675 (695)
16 2zwa_A Leucine carboxyl methyl 100.0 5.5E-32 1.9E-36 289.4 24.9 235 167-458 386-642 (695)
17 1k3i_A Galactose oxidase precu 100.0 1.7E-32 5.9E-37 292.7 18.1 302 70-465 175-511 (656)
18 1k3i_A Galactose oxidase precu 100.0 5E-30 1.7E-34 273.7 15.0 269 68-409 226-531 (656)
19 2ovr_B FBW7, F-BOX/WD repeat p 98.7 3E-06 1E-10 85.0 23.9 44 41-84 17-60 (445)
20 1p22_A F-BOX/WD-repeat protein 98.6 2.2E-06 7.5E-11 85.8 21.0 41 42-82 10-54 (435)
21 3v7d_B Cell division control p 98.6 1.2E-05 4.3E-10 80.7 24.9 41 42-82 14-55 (464)
22 1fs1_A SKP2 F-BOX, cyclin A/CD 98.5 9.6E-08 3.3E-12 65.4 4.0 44 40-83 6-49 (53)
23 2e31_A FBS1, F-box only protei 98.4 6.8E-08 2.3E-12 90.4 3.4 51 37-87 45-96 (297)
24 3mbr_X Glutamine cyclotransfer 98.0 0.0016 5.5E-08 59.2 22.2 194 172-409 23-225 (243)
25 3nol_A Glutamine cyclotransfer 97.8 0.0035 1.2E-07 57.4 20.8 192 173-408 46-245 (262)
26 3q7m_A Lipoprotein YFGL, BAMB; 97.6 0.042 1.4E-06 53.1 26.4 188 176-422 140-337 (376)
27 3nok_A Glutaminyl cyclase; bet 97.6 0.0038 1.3E-07 57.3 17.3 154 173-373 58-212 (268)
28 3dsm_A Uncharacterized protein 97.6 0.021 7.3E-07 54.3 23.6 194 172-422 46-253 (328)
29 3q7m_A Lipoprotein YFGL, BAMB; 97.5 0.039 1.3E-06 53.3 24.4 168 174-406 183-366 (376)
30 3dsm_A Uncharacterized protein 97.4 0.058 2E-06 51.3 24.2 143 194-376 16-166 (328)
31 2iwa_A Glutamine cyclotransfer 97.2 0.054 1.8E-06 49.9 20.9 157 173-373 24-183 (266)
32 1l0q_A Surface layer protein; 97.0 0.035 1.2E-06 53.6 18.0 146 179-376 43-194 (391)
33 3mbr_X Glutamine cyclotransfer 96.9 0.08 2.7E-06 47.9 18.6 153 221-422 25-179 (243)
34 3nol_A Glutamine cyclotransfer 96.6 0.12 4E-06 47.4 17.0 153 221-422 47-201 (262)
35 1q7f_A NHL, brain tumor CG1071 96.5 0.5 1.7E-05 43.2 24.0 184 178-418 87-278 (286)
36 2hqs_A Protein TOLB; TOLB, PAL 96.5 0.43 1.5E-05 46.8 21.9 194 179-421 189-386 (415)
37 1rwi_B Serine/threonine-protei 96.5 0.47 1.6E-05 42.7 22.8 183 179-421 77-263 (270)
38 3l2o_B F-box only protein 4; s 96.5 0.0014 4.7E-08 60.7 3.1 44 42-85 4-47 (312)
39 1l0q_A Surface layer protein; 96.4 0.11 3.9E-06 49.9 16.9 147 179-374 85-236 (391)
40 2ovr_B FBW7, F-BOX/WD repeat p 96.2 0.47 1.6E-05 46.6 20.4 192 178-421 247-441 (445)
41 1pex_A Collagenase-3, MMP-13; 96.1 0.28 9.7E-06 43.2 16.4 156 175-375 29-196 (207)
42 3vgz_A Uncharacterized protein 96.1 0.89 3E-05 42.6 23.4 154 179-376 100-267 (353)
43 3bws_A Protein LP49; two-domai 96.1 0.23 7.8E-06 48.5 17.6 153 179-376 133-297 (433)
44 3v7d_B Cell division control p 96.1 1.1 3.9E-05 43.9 22.9 183 179-419 279-462 (464)
45 3v9f_A Two-component system se 96.1 0.27 9.4E-06 52.6 19.1 147 179-378 460-618 (781)
46 3nok_A Glutaminyl cyclase; bet 96.0 0.39 1.3E-05 43.9 16.9 151 221-423 59-211 (268)
47 1p22_A F-BOX/WD-repeat protein 95.8 0.46 1.6E-05 46.6 18.4 185 177-421 140-324 (435)
48 3no2_A Uncharacterized protein 95.7 1.2 4.3E-05 40.8 24.0 177 175-406 43-230 (276)
49 1rwi_B Serine/threonine-protei 95.7 1.1 3.9E-05 40.1 19.9 185 178-422 33-222 (270)
50 3bws_A Protein LP49; two-domai 95.6 0.91 3.1E-05 44.1 19.5 189 179-415 223-427 (433)
51 2ast_B S-phase kinase-associat 95.6 0.0042 1.4E-07 59.4 2.2 42 40-81 6-47 (336)
52 4ery_A WD repeat-containing pr 95.6 1.4 4.8E-05 40.6 21.6 148 179-374 76-226 (312)
53 2z2n_A Virginiamycin B lyase; 95.5 1.4 4.9E-05 39.9 24.2 172 179-406 109-283 (299)
54 1gxr_A ESG1, transducin-like e 95.4 1.3 4.4E-05 40.9 18.9 173 179-410 152-328 (337)
55 3jrp_A Fusion protein of prote 95.3 1 3.6E-05 42.4 18.2 64 180-257 69-136 (379)
56 3scy_A Hypothetical bacterial 95.3 1.5 5.1E-05 41.4 19.3 99 312-421 235-338 (361)
57 4a2l_A BT_4663, two-component 95.3 0.51 1.7E-05 50.6 17.5 150 179-378 462-621 (795)
58 3hfq_A Uncharacterized protein 95.2 0.43 1.5E-05 45.0 15.2 65 178-254 49-116 (347)
59 1itv_A MMP9; adaptive molecula 95.2 0.36 1.2E-05 42.1 13.1 153 175-373 12-176 (195)
60 3oyo_A Hemopexin fold protein 95.2 0.14 4.9E-06 45.8 10.6 156 178-370 12-197 (225)
61 2iwa_A Glutamine cyclotransfer 95.1 1.2 4E-05 40.9 16.9 156 220-423 24-182 (266)
62 2hqs_A Protein TOLB; TOLB, PAL 95.1 1.3 4.6E-05 43.2 18.7 158 180-378 235-394 (415)
63 3scy_A Hypothetical bacterial 95.1 1.7 5.8E-05 41.1 19.1 69 179-256 61-130 (361)
64 1gxr_A ESG1, transducin-like e 95.1 0.45 1.5E-05 44.1 14.6 184 179-421 108-295 (337)
65 3vgz_A Uncharacterized protein 95.0 2.4 8.1E-05 39.5 20.2 150 179-376 152-308 (353)
66 1nir_A Nitrite reductase; hemo 94.9 0.78 2.7E-05 46.9 16.9 69 345-420 332-402 (543)
67 3jrp_A Fusion protein of prote 94.9 0.72 2.5E-05 43.5 15.8 72 179-264 22-97 (379)
68 2qc5_A Streptogramin B lactona 94.7 2.4 8.1E-05 38.4 23.5 180 179-420 114-298 (300)
69 3v9f_A Two-component system se 94.7 1.2 4E-05 47.7 18.3 177 179-406 417-600 (781)
70 2ojh_A Uncharacterized protein 94.6 2.4 8.2E-05 38.0 19.1 157 179-378 52-213 (297)
71 2p1m_B Transport inhibitor res 94.6 0.013 4.3E-07 60.8 2.4 36 41-76 4-40 (594)
72 1ri6_A Putative isomerase YBHE 94.5 2.7 9.1E-05 38.9 18.6 25 349-377 244-270 (343)
73 1q7f_A NHL, brain tumor CG1071 94.5 2.7 9.2E-05 38.1 20.6 190 179-421 40-237 (286)
74 4ery_A WD repeat-containing pr 94.4 1.5 5.2E-05 40.4 16.4 146 179-375 34-184 (312)
75 1k8k_C P40, ARP2/3 complex 41 94.3 1.6 5.3E-05 41.1 16.6 65 179-257 63-129 (372)
76 1r5m_A SIR4-interacting protei 94.2 3.9 0.00013 38.9 20.7 147 179-375 160-323 (425)
77 3azo_A Aminopeptidase; POP fam 94.2 5.9 0.0002 40.9 22.7 197 194-422 160-369 (662)
78 3c7x_A Matrix metalloproteinas 94.2 0.59 2E-05 40.7 12.0 152 175-373 11-177 (196)
79 1su3_A Interstitial collagenas 94.2 0.37 1.3E-05 47.9 11.9 158 174-376 267-437 (450)
80 4a2l_A BT_4663, two-component 94.2 7.1 0.00024 41.6 25.3 155 178-378 140-298 (795)
81 2dg1_A DRP35, lactonase; beta 94.1 2.7 9.4E-05 39.0 17.8 79 179-261 97-177 (333)
82 1k8k_C P40, ARP2/3 complex 41 94.1 0.69 2.3E-05 43.7 13.5 69 179-261 19-89 (372)
83 1qhu_A Protein (hemopexin); be 94.0 1.2 4.1E-05 44.3 15.2 153 179-371 158-331 (460)
84 3u4y_A Uncharacterized protein 94.0 2 6.9E-05 39.7 16.5 134 196-377 109-258 (331)
85 2z2n_A Virginiamycin B lyase; 93.9 3.6 0.00012 37.1 24.1 183 178-420 66-253 (299)
86 3g4e_A Regucalcin; six bladed 93.8 2 6.8E-05 39.6 15.9 68 179-254 64-138 (297)
87 2ojh_A Uncharacterized protein 93.8 2.2 7.4E-05 38.3 15.9 160 179-377 95-264 (297)
88 2qc5_A Streptogramin B lactona 93.7 3.9 0.00013 36.9 23.1 183 179-420 72-258 (300)
89 1w6s_A Methanol dehydrogenase 93.6 7.4 0.00025 40.1 24.9 123 173-325 56-199 (599)
90 3ow8_A WD repeat-containing pr 93.6 4.5 0.00016 37.6 20.2 147 179-374 133-282 (321)
91 3no2_A Uncharacterized protein 93.4 4.6 0.00016 36.9 19.2 183 179-421 4-194 (276)
92 2aq5_A Coronin-1A; WD40 repeat 93.3 5.1 0.00017 38.4 18.5 153 179-372 93-255 (402)
93 3jro_A Fusion protein of prote 93.3 0.8 2.7E-05 48.8 13.5 107 179-320 20-133 (753)
94 3u4y_A Uncharacterized protein 93.2 1.7 5.9E-05 40.2 14.5 68 179-260 51-122 (331)
95 3vl1_A 26S proteasome regulato 93.2 6.1 0.00021 37.8 19.3 65 178-257 107-172 (420)
96 2xbg_A YCF48-like protein; pho 93.2 5.5 0.00019 37.3 18.7 179 174-407 84-268 (327)
97 1gen_A Gelatinase A; hydrolase 93.2 2.6 8.8E-05 37.3 14.5 155 175-373 36-204 (218)
98 3lp9_A LS-24; SEED albumin, pl 93.1 0.15 5.1E-06 45.7 6.3 66 292-372 129-202 (227)
99 1r5m_A SIR4-interacting protei 93.1 1.4 4.6E-05 42.3 13.9 144 179-373 217-363 (425)
100 3hfq_A Uncharacterized protein 93.1 2.1 7E-05 40.2 14.9 63 194-263 17-80 (347)
101 3ba0_A Macrophage metalloelast 93.1 2.5 8.6E-05 40.6 15.4 153 175-376 186-355 (365)
102 3ow8_A WD repeat-containing pr 93.0 5.7 0.00019 36.9 20.5 183 179-421 91-278 (321)
103 2ad6_A Methanol dehydrogenase 92.9 9.2 0.00031 39.1 26.9 122 174-325 57-193 (571)
104 4aez_A CDC20, WD repeat-contai 92.9 5.8 0.0002 38.0 18.2 148 179-375 145-297 (401)
105 4g56_B MGC81050 protein; prote 92.9 2.8 9.5E-05 39.8 15.5 183 179-421 150-342 (357)
106 3dwl_C Actin-related protein 2 92.9 0.52 1.8E-05 44.9 10.3 151 179-372 22-178 (377)
107 3jro_A Fusion protein of prote 92.8 1.9 6.4E-05 45.9 15.5 63 180-256 67-133 (753)
108 4e54_B DNA damage-binding prot 92.7 2.6 9E-05 41.1 15.5 64 179-256 176-241 (435)
109 1got_B GT-beta; complex (GTP-b 92.7 4.9 0.00017 37.6 17.0 148 178-373 153-303 (340)
110 3mkq_A Coatomer beta'-subunit; 92.7 4.5 0.00016 42.8 18.5 147 179-374 66-220 (814)
111 2dg1_A DRP35, lactonase; beta 92.6 3.6 0.00012 38.1 15.9 155 178-371 54-213 (333)
112 3azo_A Aminopeptidase; POP fam 92.6 4.3 0.00015 42.0 17.7 154 194-378 216-376 (662)
113 1kb0_A Quinohemoprotein alcoho 92.5 12 0.0004 39.2 27.5 121 174-325 72-207 (677)
114 1qhu_A Protein (hemopexin); be 92.5 7 0.00024 38.7 17.9 94 179-320 107-216 (460)
115 3vl1_A 26S proteasome regulato 92.4 7.8 0.00027 37.0 21.2 104 292-422 258-365 (420)
116 3fm0_A Protein CIAO1; WDR39,SG 92.2 1 3.5E-05 42.6 11.4 156 178-377 26-187 (345)
117 1pjx_A Dfpase, DIISOPROPYLFLUO 92.2 3.4 0.00011 37.8 14.8 74 180-261 83-167 (314)
118 1pex_A Collagenase-3, MMP-13; 92.1 5.7 0.0002 34.7 16.0 136 221-407 28-182 (207)
119 1itv_A MMP9; adaptive molecula 92.0 1.6 5.5E-05 37.9 11.3 137 221-408 11-165 (195)
120 3ott_A Two-component system se 91.9 3.6 0.00012 43.6 16.5 139 179-371 482-626 (758)
121 1vyh_C Platelet-activating fac 91.9 9.5 0.00032 36.8 19.7 64 179-258 161-226 (410)
122 3ei3_B DNA damage-binding prot 91.8 6.7 0.00023 37.1 16.9 144 181-371 87-236 (383)
123 3dwl_C Actin-related protein 2 91.7 0.83 2.8E-05 43.4 10.2 65 179-257 66-133 (377)
124 1kv9_A Type II quinohemoprotei 91.6 15 0.0005 38.4 27.0 121 174-325 61-195 (668)
125 2fp8_A Strictosidine synthase; 91.5 5.1 0.00018 37.2 15.4 141 194-372 164-314 (322)
126 4aez_A CDC20, WD repeat-contai 91.5 3.7 0.00013 39.4 14.8 134 195-373 113-250 (401)
127 2z3z_A Dipeptidyl aminopeptida 91.5 6.9 0.00024 40.7 17.9 162 179-373 268-437 (706)
128 1vyh_C Platelet-activating fac 91.4 5.5 0.00019 38.5 16.0 147 179-375 119-269 (410)
129 3e5z_A Putative gluconolactona 91.3 6.8 0.00023 35.6 15.8 128 194-374 152-289 (296)
130 1flg_A Protein (quinoprotein e 91.1 15 0.00051 37.6 26.3 72 174-261 63-144 (582)
131 3m0c_C LDL receptor, low-densi 91.1 18 0.00062 38.6 23.5 172 179-407 435-620 (791)
132 1hxn_A Hemopexin, HPX; heme, b 91.1 5 0.00017 35.4 13.7 58 178-255 27-90 (219)
133 3fvz_A Peptidyl-glycine alpha- 91.1 9.7 0.00033 35.4 21.0 155 195-376 69-232 (329)
134 1sq9_A Antiviral protein SKI8; 90.8 9.1 0.00031 36.1 16.7 24 347-374 302-325 (397)
135 1kb0_A Quinohemoprotein alcoho 90.6 18 0.00063 37.7 24.5 78 174-261 123-207 (677)
136 3ogk_B Coronatine-insensitive 90.4 0.081 2.8E-06 54.6 1.6 33 44-76 14-47 (592)
137 4gqb_B Methylosome protein 50; 90.4 5.4 0.00018 37.7 14.4 149 179-376 138-294 (344)
138 2vdu_B TRNA (guanine-N(7)-)-me 90.3 14 0.00048 35.9 20.3 107 179-323 160-275 (450)
139 4e54_B DNA damage-binding prot 90.1 7.2 0.00025 37.9 15.5 148 179-373 131-284 (435)
140 2z3z_A Dipeptidyl aminopeptida 89.9 20 0.00068 37.1 21.9 159 194-378 234-398 (706)
141 4a11_B DNA excision repair pro 89.9 7.7 0.00026 36.6 15.3 65 179-257 111-177 (408)
142 1qks_A Cytochrome CD1 nitrite 89.9 9.7 0.00033 38.9 16.6 64 179-257 208-277 (567)
143 2pbi_B Guanine nucleotide-bind 89.9 7.3 0.00025 36.7 15.0 136 195-373 176-317 (354)
144 2ad6_A Methanol dehydrogenase 89.9 19 0.00064 36.7 24.1 78 174-261 110-193 (571)
145 1yiq_A Quinohemoprotein alcoho 89.4 23 0.00078 37.0 27.9 121 174-325 65-200 (689)
146 3i2n_A WD repeat-containing pr 89.4 13 0.00044 34.2 16.2 62 291-371 178-243 (357)
147 4g56_B MGC81050 protein; prote 89.2 6.1 0.00021 37.4 13.8 142 181-371 195-343 (357)
148 4gqb_B Methylosome protein 50; 89.1 15 0.0005 34.6 16.4 149 178-373 91-248 (344)
149 3ei3_B DNA damage-binding prot 89.0 10 0.00035 35.7 15.4 64 179-256 130-195 (383)
150 1sq9_A Antiviral protein SKI8; 88.8 16 0.00054 34.4 17.4 68 181-264 27-115 (397)
151 2hz6_A Endoplasmic reticulum t 88.8 0.61 2.1E-05 45.0 6.3 67 175-260 5-75 (369)
152 1jmx_B Amine dehydrogenase; ox 88.7 2.3 8E-05 39.4 10.4 68 178-259 9-78 (349)
153 3p5b_L Low density lipoprotein 88.7 18 0.00061 34.9 23.4 181 179-420 123-318 (400)
154 3zwl_B Eukaryotic translation 88.7 15 0.0005 33.9 16.2 21 226-255 186-206 (369)
155 3mkq_A Coatomer beta'-subunit; 88.6 5.6 0.00019 42.1 14.4 146 179-373 24-174 (814)
156 1kv9_A Type II quinohemoprotei 88.5 10 0.00035 39.6 16.0 127 221-376 61-194 (668)
157 1got_B GT-beta; complex (GTP-b 88.5 16 0.00053 34.0 23.5 148 179-374 108-260 (340)
158 3c5m_A Oligogalacturonate lyas 88.5 9.9 0.00034 35.8 14.9 152 194-377 167-335 (396)
159 1ri6_A Putative isomerase YBHE 88.4 15 0.0005 33.6 18.2 62 179-254 49-114 (343)
160 3sfz_A APAF-1, apoptotic pepti 88.3 3.1 0.00011 46.7 12.7 142 196-374 1066-1210(1249)
161 3v65_B Low-density lipoprotein 88.2 19 0.00064 34.5 23.1 180 178-420 126-316 (386)
162 2pm9_A Protein WEB1, protein t 87.9 18 0.00063 34.1 18.6 158 180-374 126-297 (416)
163 1ijq_A LDL receptor, low-densi 87.8 17 0.00059 33.6 24.1 171 179-406 41-225 (316)
164 1n7d_A LDL receptor, low-densi 87.7 22 0.00076 37.2 18.0 172 179-407 417-602 (699)
165 2hes_X YDR267CP; beta-propelle 87.6 4.6 0.00016 37.6 11.6 70 179-262 118-191 (330)
166 1yiq_A Quinohemoprotein alcoho 87.6 10 0.00035 39.7 15.3 127 221-376 65-199 (689)
167 1pjx_A Dfpase, DIISOPROPYLFLUO 87.5 16 0.00055 33.0 18.2 73 178-261 27-106 (314)
168 2pm9_A Protein WEB1, protein t 87.5 13 0.00043 35.3 15.1 70 348-422 178-249 (416)
169 3i2n_A WD repeat-containing pr 87.2 18 0.00061 33.2 16.4 152 180-374 31-202 (357)
170 3ott_A Two-component system se 86.8 17 0.00058 38.3 16.8 109 178-326 72-181 (758)
171 2pm7_B Protein transport prote 86.8 18 0.00061 32.8 15.9 70 178-261 19-92 (297)
172 3k26_A Polycomb protein EED; W 86.5 7.5 0.00026 36.0 12.5 64 180-259 85-151 (366)
173 1w6s_A Methanol dehydrogenase 86.4 32 0.0011 35.3 21.7 75 178-262 116-200 (599)
174 1gen_A Gelatinase A; hydrolase 86.3 12 0.00043 32.8 12.8 53 347-407 135-192 (218)
175 3bg1_A Protein SEC13 homolog; 86.2 7.1 0.00024 36.0 12.0 69 179-261 24-96 (316)
176 2pbi_B Guanine nucleotide-bind 86.1 22 0.00076 33.2 20.6 65 292-374 209-274 (354)
177 3sfz_A APAF-1, apoptotic pepti 86.1 15 0.00051 41.2 16.6 147 179-374 1014-1161(1249)
178 3b7f_A Glycosyl hydrolase, BNR 86.0 25 0.00084 33.6 20.9 167 179-379 67-270 (394)
179 3zwl_B Eukaryotic translation 85.4 22 0.00077 32.6 17.4 67 179-256 85-152 (369)
180 3oyo_A Hemopexin fold protein 85.3 2.7 9.1E-05 37.4 8.0 55 347-408 127-189 (225)
181 4a11_B DNA excision repair pro 85.3 16 0.00056 34.2 14.5 62 180-257 156-220 (408)
182 3odt_A Protein DOA1; ubiquitin 85.0 21 0.00072 32.0 15.1 63 178-255 27-90 (313)
183 1ck7_A Protein (gelatinase A); 85.0 9.8 0.00033 39.2 13.0 155 174-372 448-616 (631)
184 4gga_A P55CDC, cell division c 85.0 11 0.00036 36.4 13.1 134 195-372 125-262 (420)
185 1yr2_A Prolyl oligopeptidase; 85.0 9.9 0.00034 40.1 13.7 150 193-379 292-449 (741)
186 2aq5_A Coronin-1A; WD40 repeat 84.9 27 0.00091 33.1 18.9 156 226-422 93-254 (402)
187 1npe_A Nidogen, entactin; glyc 84.9 21 0.00071 31.8 23.5 189 173-421 39-237 (267)
188 3e5z_A Putative gluconolactona 84.3 18 0.0006 32.7 13.7 114 227-377 40-167 (296)
189 3lrv_A PRE-mRNA-splicing facto 84.0 26 0.0009 32.3 17.5 65 179-257 138-203 (343)
190 1erj_A Transcriptional repress 83.9 9.7 0.00033 36.4 12.1 149 179-372 134-288 (393)
191 4gga_A P55CDC, cell division c 83.8 24 0.00082 33.8 15.1 63 179-257 158-220 (420)
192 3fm0_A Protein CIAO1; WDR39,SG 83.7 28 0.00095 32.3 16.5 147 179-369 72-223 (345)
193 2xbg_A YCF48-like protein; pho 83.6 28 0.00096 32.3 21.1 149 178-378 131-286 (327)
194 3c5m_A Oligogalacturonate lyas 83.5 22 0.00074 33.3 14.4 158 195-378 216-391 (396)
195 1pgu_A Actin interacting prote 83.4 39 0.0013 33.8 18.5 148 182-372 175-329 (615)
196 2xdw_A Prolyl endopeptidase; a 83.0 20 0.00069 37.4 15.0 147 194-377 258-422 (710)
197 3iz6_a 40S ribosomal protein R 82.4 33 0.0011 32.3 19.1 186 181-411 171-367 (380)
198 3dr2_A Exported gluconolactona 82.0 30 0.001 31.4 14.5 161 179-377 96-273 (305)
199 1pgu_A Actin interacting prote 81.9 24 0.00081 35.5 14.8 132 195-371 467-614 (615)
200 2ymu_A WD-40 repeat protein; u 81.9 36 0.0012 33.9 16.1 173 179-410 396-571 (577)
201 1erj_A Transcriptional repress 81.6 36 0.0012 32.2 15.5 106 226-375 134-242 (393)
202 2ynn_A Coatomer subunit beta'; 81.5 31 0.0011 31.3 15.9 65 179-257 24-88 (304)
203 2fp8_A Strictosidine synthase; 81.2 20 0.00067 33.1 12.8 202 174-421 84-312 (322)
204 3dr2_A Exported gluconolactona 81.1 19 0.00066 32.8 12.6 102 194-327 168-275 (305)
205 3b7f_A Glycosyl hydrolase, BNR 80.9 39 0.0013 32.1 24.1 166 179-382 128-333 (394)
206 1jmx_B Amine dehydrogenase; ox 80.8 6.6 0.00023 36.2 9.4 68 225-323 9-78 (349)
207 1flg_A Protein (quinoprotein e 80.7 30 0.001 35.3 14.9 125 221-376 63-200 (582)
208 2vdu_B TRNA (guanine-N(7)-)-me 80.6 42 0.0015 32.3 16.6 65 293-375 210-275 (450)
209 4aow_A Guanine nucleotide-bind 80.5 33 0.0011 31.1 19.1 64 292-374 226-289 (340)
210 1npe_A Nidogen, entactin; glyc 79.7 32 0.0011 30.4 21.0 148 179-376 90-243 (267)
211 1su3_A Interstitial collagenas 79.5 15 0.0005 36.3 11.6 54 347-408 367-423 (450)
212 2bkl_A Prolyl endopeptidase; m 78.8 65 0.0022 33.4 22.4 150 194-377 201-357 (695)
213 3v64_C Agrin; beta propeller, 78.6 44 0.0015 31.3 25.3 171 178-407 83-263 (349)
214 2ynn_A Coatomer subunit beta'; 78.6 38 0.0013 30.6 18.6 62 179-256 66-129 (304)
215 3odt_A Protein DOA1; ubiquitin 78.6 36 0.0012 30.3 18.9 25 344-373 192-216 (313)
216 1pby_B Quinohemoprotein amine 78.4 21 0.00073 32.3 12.1 56 195-259 11-69 (337)
217 3lrv_A PRE-mRNA-splicing facto 78.0 43 0.0015 30.8 21.3 105 226-373 138-246 (343)
218 2ecf_A Dipeptidyl peptidase IV 77.8 69 0.0024 33.2 19.7 57 195-263 129-189 (741)
219 3g4e_A Regucalcin; six bladed 77.7 19 0.00063 32.8 11.3 108 226-371 24-139 (297)
220 2bkl_A Prolyl endopeptidase; m 77.6 70 0.0024 33.1 20.5 209 179-420 131-349 (695)
221 2p4o_A Hypothetical protein; p 77.3 43 0.0015 30.5 20.1 66 179-256 82-148 (306)
222 3pe7_A Oligogalacturonate lyas 77.2 23 0.00078 33.2 12.1 204 194-421 167-383 (388)
223 3c7x_A Matrix metalloproteinas 77.0 8.6 0.00029 33.2 8.0 21 347-373 109-129 (196)
224 3hrp_A Uncharacterized protein 76.7 55 0.0019 31.5 21.9 163 179-378 182-361 (409)
225 3gre_A Serine/threonine-protei 75.8 43 0.0015 31.9 13.9 66 179-258 181-248 (437)
226 3o4h_A Acylamino-acid-releasin 75.7 35 0.0012 34.4 13.7 178 197-421 134-314 (582)
227 1yfq_A Cell cycle arrest prote 75.4 47 0.0016 30.1 17.8 63 179-255 67-131 (342)
228 3mmy_A MRNA export factor; mRN 75.2 49 0.0017 30.1 14.3 142 180-372 54-200 (368)
229 2ghs_A AGR_C_1268P; regucalcin 75.1 51 0.0017 30.3 14.0 112 226-377 60-174 (326)
230 1nir_A Nitrite reductase; hemo 74.9 58 0.002 32.7 15.0 67 179-259 291-359 (543)
231 3k26_A Polycomb protein EED; W 74.6 38 0.0013 30.9 12.8 107 227-373 85-194 (366)
232 3hxj_A Pyrrolo-quinoline quino 73.5 53 0.0018 29.7 16.9 139 177-376 105-250 (330)
233 1yfq_A Cell cycle arrest prote 73.1 54 0.0018 29.7 21.7 54 347-411 262-315 (342)
234 3mmy_A MRNA export factor; mRN 72.2 58 0.002 29.6 18.3 63 178-257 139-201 (368)
235 4aow_A Guanine nucleotide-bind 72.1 56 0.0019 29.5 18.6 148 179-373 97-248 (340)
236 3lp9_A LS-24; SEED albumin, pl 72.0 13 0.00045 32.9 8.1 62 177-257 70-149 (227)
237 3bg1_A Protein SEC13 homolog; 71.3 60 0.0021 29.4 17.2 68 180-261 71-143 (316)
238 2ecf_A Dipeptidyl peptidase IV 70.9 1E+02 0.0035 31.8 22.0 62 312-378 314-375 (741)
239 3fvz_A Peptidyl-glycine alpha- 70.8 64 0.0022 29.5 27.2 187 179-409 101-312 (329)
240 3iuj_A Prolyl endopeptidase; h 70.7 99 0.0034 32.0 16.0 72 345-423 242-315 (693)
241 2ymu_A WD-40 repeat protein; u 68.9 94 0.0032 30.7 17.3 143 179-373 355-500 (577)
242 3iz6_a 40S ribosomal protein R 68.4 78 0.0027 29.6 18.6 154 179-372 217-376 (380)
243 1pby_B Quinohemoprotein amine 67.9 57 0.0019 29.3 12.2 76 179-259 45-128 (337)
244 2ghs_A AGR_C_1268P; regucalcin 67.1 77 0.0026 29.0 19.4 72 178-261 99-174 (326)
245 1n7d_A LDL receptor, low-densi 67.0 52 0.0018 34.4 12.8 149 178-376 463-619 (699)
246 3m0c_C LDL receptor, low-densi 66.9 1.3E+02 0.0046 31.8 17.8 145 178-372 481-633 (791)
247 1xfd_A DIP, dipeptidyl aminope 66.7 96 0.0033 31.9 14.9 73 179-261 71-149 (723)
248 3dm0_A Maltose-binding peripla 66.5 1.2E+02 0.0041 31.1 20.8 150 179-374 441-595 (694)
249 4a0p_A LRP6, LRP-6, low-densit 65.8 1.2E+02 0.0043 31.0 24.8 169 178-406 47-224 (628)
250 2hes_X YDR267CP; beta-propelle 65.7 81 0.0028 28.8 16.3 157 176-377 21-190 (330)
251 3f3f_A Nucleoporin SEH1; struc 65.4 76 0.0026 28.3 20.4 64 180-257 71-145 (351)
252 4ggc_A P55CDC, cell division c 65.3 74 0.0025 28.2 12.6 63 179-257 78-140 (318)
253 1ijq_A LDL receptor, low-densi 65.2 84 0.0029 28.8 19.5 146 178-373 87-240 (316)
254 3hxj_A Pyrrolo-quinoline quino 65.0 79 0.0027 28.4 16.6 137 179-376 147-290 (330)
255 3o4h_A Acylamino-acid-releasin 63.7 1.2E+02 0.0042 30.2 15.8 141 194-376 89-232 (582)
256 3sov_A LRP-6, low-density lipo 63.5 92 0.0031 28.7 20.5 180 179-421 46-237 (318)
257 1hxn_A Hemopexin, HPX; heme, b 63.2 30 0.001 30.3 8.5 68 287-371 22-90 (219)
258 3ba0_A Macrophage metalloelast 63.2 1E+02 0.0035 29.2 13.9 111 179-324 236-355 (365)
259 1k32_A Tricorn protease; prote 62.9 85 0.0029 34.3 14.2 145 195-378 317-468 (1045)
260 3dm0_A Maltose-binding peripla 62.7 1.4E+02 0.0049 30.6 15.9 147 179-375 483-636 (694)
261 3hrp_A Uncharacterized protein 62.6 1.1E+02 0.0038 29.3 16.4 152 178-372 140-299 (409)
262 4ggc_A P55CDC, cell division c 61.7 55 0.0019 29.2 10.7 55 195-258 45-101 (318)
263 2xyi_A Probable histone-bindin 61.4 1.1E+02 0.0038 29.1 13.4 19 349-371 291-309 (430)
264 2xdw_A Prolyl endopeptidase; a 60.8 1.6E+02 0.0053 30.4 24.5 152 194-377 207-375 (710)
265 1qks_A Cytochrome CD1 nitrite 60.6 1.3E+02 0.0044 30.5 14.0 59 179-254 166-226 (567)
266 3tc9_A Hypothetical hydrolase; 59.5 60 0.0021 31.5 11.0 143 179-370 149-300 (430)
267 3pe7_A Oligogalacturonate lyas 58.9 1.1E+02 0.0038 28.2 17.6 161 195-377 102-279 (388)
268 1nr0_A Actin interacting prote 58.2 1.6E+02 0.0054 29.7 20.0 154 179-377 201-361 (611)
269 3s94_A LRP-6, low-density lipo 58.0 1.7E+02 0.0058 29.9 20.2 183 179-422 360-551 (619)
270 3f3f_A Nucleoporin SEH1; struc 57.8 1E+02 0.0035 27.4 18.7 64 179-256 22-91 (351)
271 3frx_A Guanine nucleotide-bind 57.1 1.1E+02 0.0038 27.6 16.0 144 179-373 76-229 (319)
272 1ck7_A Protein (gelatinase A); 55.2 42 0.0015 34.5 9.1 21 346-372 547-567 (631)
273 2cn3_A Xyloglucanase, beta-1,4 55.2 2E+02 0.0069 30.0 18.2 126 203-378 554-694 (737)
274 2gop_A Trilobed protease; beta 55.1 1.2E+02 0.0042 27.4 16.9 149 194-378 84-258 (347)
275 3p5b_L Low density lipoprotein 53.7 1.5E+02 0.0052 28.1 16.9 145 178-372 169-321 (400)
276 3ei3_A DNA damage-binding prot 52.8 2.8E+02 0.0095 30.9 18.3 186 195-421 807-1000(1158)
277 3ju4_A Endo-N-acetylneuraminid 51.7 92 0.0031 30.0 9.9 113 286-408 287-406 (670)
278 2xzm_R RACK1; ribosome, transl 51.5 1.4E+02 0.0049 27.1 13.7 61 179-256 87-150 (343)
279 2xyi_A Probable histone-bindin 50.3 1.7E+02 0.0059 27.7 16.3 22 226-256 243-264 (430)
280 1yr2_A Prolyl oligopeptidase; 50.0 2.4E+02 0.0081 29.2 20.5 83 312-409 296-383 (741)
281 4h5i_A Guanine nucleotide-exch 49.2 1.6E+02 0.0056 27.2 17.5 154 179-371 187-343 (365)
282 2pm7_B Protein transport prote 49.1 1.4E+02 0.0049 26.5 20.1 63 180-256 67-133 (297)
283 3v65_B Low-density lipoprotein 47.8 1.8E+02 0.0063 27.3 19.0 170 195-421 96-276 (386)
284 2xzm_R RACK1; ribosome, transl 45.4 1.8E+02 0.0061 26.5 16.5 24 226-258 87-110 (343)
285 3iuj_A Prolyl endopeptidase; h 45.4 2.7E+02 0.0092 28.6 23.1 149 194-377 207-365 (693)
286 2oit_A Nucleoporin 214KDA; NH2 45.1 2.2E+02 0.0074 27.3 17.0 56 362-419 269-332 (434)
287 3k6s_A Integrin alpha-X; cell 44.8 2.2E+02 0.0077 31.4 13.4 85 312-398 414-509 (1095)
288 2p9w_A MAL S 1 allergenic prot 41.1 2.3E+02 0.0077 26.5 11.0 63 179-255 147-215 (334)
289 3v64_C Agrin; beta propeller, 39.5 2.3E+02 0.008 26.1 19.1 170 195-421 53-233 (349)
290 2xe4_A Oligopeptidase B; hydro 39.3 3.5E+02 0.012 28.1 15.0 61 194-260 294-360 (751)
291 3ju4_A Endo-N-acetylneuraminid 39.3 2.7E+02 0.0093 26.9 16.1 189 170-410 284-483 (670)
292 3sre_A PON1, serum paraoxonase 38.8 2.4E+02 0.0081 26.5 11.0 72 170-255 166-252 (355)
293 4hw6_A Hypothetical protein, I 37.4 2.9E+02 0.0098 26.6 13.1 143 180-370 153-303 (433)
294 4h5i_A Guanine nucleotide-exch 36.8 2.6E+02 0.0087 25.8 14.1 140 246-421 157-299 (365)
295 3frx_A Guanine nucleotide-bind 30.2 3E+02 0.01 24.6 17.9 24 291-321 206-229 (319)
296 3sov_A LRP-6, low-density lipo 30.2 3.2E+02 0.011 24.9 20.8 144 178-373 89-240 (318)
297 3sjl_D Methylamine dehydrogena 28.7 1.6E+02 0.0054 28.1 8.0 75 226-324 291-368 (386)
298 2mad_H Methylamine dehydrogena 28.6 2.7E+02 0.0094 26.0 9.8 33 226-258 278-310 (373)
299 1xfd_A DIP, dipeptidyl aminope 27.1 5E+02 0.017 26.2 18.8 17 246-262 228-245 (723)
300 2kwv_A RAD30 homolog B, DNA po 26.9 51 0.0018 20.7 2.6 25 36-60 14-38 (48)
301 2cn3_A Xyloglucanase, beta-1,4 26.3 5.6E+02 0.019 26.5 13.2 56 179-234 254-321 (737)
302 4hvt_A Ritya.17583.B, post-pro 25.0 2.8E+02 0.0096 28.9 9.7 154 194-379 268-437 (711)
303 3gre_A Serine/threonine-protei 24.4 4.3E+02 0.015 24.5 15.2 108 226-373 181-294 (437)
304 3sjl_D Methylamine dehydrogena 22.9 1.3E+02 0.0044 28.8 6.1 71 178-259 290-367 (386)
305 2gop_A Trilobed protease; beta 22.8 4.1E+02 0.014 23.7 15.4 61 193-263 41-102 (347)
306 2oiz_A Aromatic amine dehydrog 21.7 2.3E+02 0.0078 26.2 7.7 65 178-256 264-335 (361)
307 2p9w_A MAL S 1 allergenic prot 21.2 5E+02 0.017 24.1 14.6 176 194-408 99-304 (334)
308 1nr0_A Actin interacting prote 21.1 6.2E+02 0.021 25.1 21.2 150 182-373 162-315 (611)
309 2hz6_A Endoplasmic reticulum t 20.8 1.2E+02 0.0041 28.4 5.5 66 223-324 6-75 (369)
310 1k32_A Tricorn protease; prote 20.2 8.3E+02 0.028 26.3 21.7 98 246-377 317-415 (1045)
311 2oiz_A Aromatic amine dehydrog 20.1 2.5E+02 0.0085 26.0 7.6 75 180-257 16-92 (361)
No 1
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=6.1e-44 Score=346.22 Aligned_cols=279 Identities=23% Similarity=0.380 Sum_probs=232.5
Q ss_pred hccCCCccEEEEEEeecCC-ceeeEEecCCCCceeeCCCCCCCcchhhhcccccccceeeccceeeeeEeeecccCCCCC
Q 011881 87 KELGTTEEWLYILTKVSDD-RLLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWNDTL 165 (475)
Q Consensus 87 ~~~~~~~~~lyv~gg~~~~-~~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (475)
+.....++.||++||.... ...+++||+.+++|..++++|.
T Consensus 18 ~~~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~-------------------------------------- 59 (308)
T 1zgk_A 18 SHAPKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQV-------------------------------------- 59 (308)
T ss_dssp ---CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSS--------------------------------------
T ss_pred ccccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCc--------------------------------------
Confidence 3344567899999997322 2378999999999999987775
Q ss_pred CCCCccceeEEEeCCEEEEEcCC----CCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCC
Q 011881 166 PQMPFCGCAIGAVDGCLYVLGGF----SRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGG 241 (475)
Q Consensus 166 ~p~pr~~~~~~~~~~~lyv~GG~----~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~ 241 (475)
||..|++++++++||++||. ++....+++++||+.+++|+.+++||.+|..|++++++++|||+||...
T Consensus 60 ---~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~---- 132 (308)
T 1zgk_A 60 ---PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG---- 132 (308)
T ss_dssp ---CCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEET----
T ss_pred ---ccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCC----
Confidence 48889999999999999998 5556678999999999999999999999999999999999999999853
Q ss_pred cccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCc
Q 011881 242 LTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNS 321 (475)
Q Consensus 242 ~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 321 (475)
...++++++||+.+++|+.++++|.+|.. +++++++++|||+||.+......++ ++||+.+++
T Consensus 133 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv~GG~~~~~~~~~~--~~yd~~~~~ 195 (308)
T 1zgk_A 133 CIHHNSVERYEPERDEWHLVAPMLTRRIG---------------VGVAVLNRLLYAVGGFDGTNRLNSA--ECYYPERNE 195 (308)
T ss_dssp TEECCCEEEEETTTTEEEECCCCSSCCBS---------------CEEEEETTEEEEECCBCSSCBCCCE--EEEETTTTE
T ss_pred CcccccEEEECCCCCeEeECCCCCccccc---------------eEEEEECCEEEEEeCCCCCCcCceE--EEEeCCCCe
Confidence 23578999999999999999999999998 8999999999999998876555444 999999999
Q ss_pred eEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCC-CCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCC
Q 011881 322 WVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSL-NSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHG 400 (475)
Q Consensus 322 W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~ 400 (475)
|+.+++ + |.++.+++ +++++++|||+||.+.. ..+++++||+++++|+++. .++.+|..++++.+++
T Consensus 196 W~~~~~-~----p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~ 263 (308)
T 1zgk_A 196 WRMITA-M----NTIRSGAG-VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA------PMKHRRSALGITVHQG 263 (308)
T ss_dssp EEECCC-C----SSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC------CCSSCCBSCEEEEETT
T ss_pred EeeCCC-C----CCccccce-EEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECC------CCCCCccceEEEEECC
Confidence 999875 4 44566665 67889999999997543 2479999999999999985 3567788999999999
Q ss_pred eEEEEeecCCCCeeEEEecCCCCCCCCccccccCCcccccccccccccccceeeeeeecccCCCcc
Q 011881 401 KLHVLTKDASRNISILRADPRDHLGSTSSSSVSLSADSLHEHSDSLAESDTVVWKAIATRNFGSAE 466 (475)
Q Consensus 401 ~l~v~GG~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~ 466 (475)
+|||+||..... .....+.||+++++|+.++.++.++..
T Consensus 264 ~i~v~GG~~~~~---------------------------~~~~v~~yd~~~~~W~~~~~~p~~r~~ 302 (308)
T 1zgk_A 264 RIYVLGGYDGHT---------------------------FLDSVECYDPDTDTWSEVTRMTSGRSG 302 (308)
T ss_dssp EEEEECCBCSSC---------------------------BCCEEEEEETTTTEEEEEEECSSCCBS
T ss_pred EEEEEcCcCCCc---------------------------ccceEEEEcCCCCEEeecCCCCCCccc
Confidence 999999976532 111234789999999999988776664
No 2
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.2e-43 Score=342.98 Aligned_cols=275 Identities=23% Similarity=0.386 Sum_probs=229.2
Q ss_pred CccEEEEEEeecCCc-eeeEEecCCCCceeeCCCCCCCcchhhhcccccccceeeccceeeeeEeeecccCCCCCCCCCc
Q 011881 92 TEEWLYILTKVSDDR-LLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWNDTLPQMPF 170 (475)
Q Consensus 92 ~~~~lyv~gg~~~~~-~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~pr 170 (475)
.++.||++||..... .++++||+.+++|..++++|. +|
T Consensus 14 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~-----------------------------------------~r 52 (302)
T 2xn4_A 14 LPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPS-----------------------------------------RR 52 (302)
T ss_dssp -CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSS-----------------------------------------CC
T ss_pred CCCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCc-----------------------------------------cc
Confidence 357899999975432 378999999999999987776 38
Q ss_pred cceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEE
Q 011881 171 CGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEV 250 (475)
Q Consensus 171 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 250 (475)
..|++++++++||++||.++....+++++||+.+++|+.+++||.+|..|++++++++|||+||... ...++++++
T Consensus 53 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~~~~ 128 (302)
T 2xn4_A 53 CRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDG----STGLSSVEA 128 (302)
T ss_dssp BSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECS----SCEEEEEEE
T ss_pred ccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCC----CccCceEEE
Confidence 8899999999999999998777789999999999999999999999999999999999999999852 335789999
Q ss_pred EeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCC
Q 011881 251 FDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMG 330 (475)
Q Consensus 251 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 330 (475)
||+.+++|+.++++|.+|.. +++++++++||++||.+..........++||+.+++|+.+++ +
T Consensus 129 ~d~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~- 191 (302)
T 2xn4_A 129 YNIKSNEWFHVAPMNTRRSS---------------VGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE-M- 191 (302)
T ss_dssp EETTTTEEEEECCCSSCCBS---------------CEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECC-C-
T ss_pred EeCCCCeEeecCCCCCcccC---------------ceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCC-C-
Confidence 99999999999999999998 899999999999999876542111334999999999999975 4
Q ss_pred CCCCCccCCCeEEEEECCeEEEEcCCCCC-CCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecC
Q 011881 331 EGWPARQAGTKLSVVLDGELYAFDPSSSL-NSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDA 409 (475)
Q Consensus 331 ~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~ 409 (475)
|.++.+++ +++++++|||+||.+.. ..+++++||+++++|+.+. .++.+|..++++.++++|||+||..
T Consensus 192 ---p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~------~~~~~r~~~~~~~~~~~i~v~GG~~ 261 (302)
T 2xn4_A 192 ---STRRSGAG-VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA------DMNMCRRNAGVCAVNGLLYVVGGDD 261 (302)
T ss_dssp ---SSCCBSCE-EEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC------CCSSCCBSCEEEEETTEEEEECCBC
T ss_pred ---cccccccc-EEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCC------CCCCccccCeEEEECCEEEEECCcC
Confidence 44566655 77889999999997543 2478999999999999985 3566788899999999999999975
Q ss_pred CCCeeEEEecCCCCCCCCccccccCCcccccccccccccccceeeeeee-cccCCCc
Q 011881 410 SRNISILRADPRDHLGSTSSSSVSLSADSLHEHSDSLAESDTVVWKAIA-TRNFGSA 465 (475)
Q Consensus 410 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~~~~~~ 465 (475)
... .....+.||+++++|+.++ .++.++.
T Consensus 262 ~~~---------------------------~~~~v~~yd~~~~~W~~~~~~~~~~r~ 291 (302)
T 2xn4_A 262 GSC---------------------------NLASVEYYNPTTDKWTVVSSCMSTGRS 291 (302)
T ss_dssp SSS---------------------------BCCCEEEEETTTTEEEECSSCCSSCCB
T ss_pred CCc---------------------------ccccEEEEcCCCCeEEECCcccCcccc
Confidence 442 0112347899999999998 5565555
No 3
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=1.1e-43 Score=344.04 Aligned_cols=272 Identities=20% Similarity=0.267 Sum_probs=230.1
Q ss_pred ccEEEEEEeecCCceeeEEecCCCCceeeCCCCCCCcchhhhcccccccceeeccceeeeeEeeecccCCCCCCCCCccc
Q 011881 93 EEWLYILTKVSDDRLLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWNDTLPQMPFCG 172 (475)
Q Consensus 93 ~~~lyv~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~pr~~ 172 (475)
.+.||++||... ..++++||+.+++|..++++|. +|..
T Consensus 11 ~~~l~~~GG~~~-~~~~~~~d~~~~~W~~~~~~p~-----------------------------------------~r~~ 48 (306)
T 3ii7_A 11 HDYRIALFGGSQ-PQSCRYFNPKDYSWTDIRCPFE-----------------------------------------KRRD 48 (306)
T ss_dssp CCEEEEEECCSS-TTSEEEEETTTTEEEECCCCSC-----------------------------------------CCBS
T ss_pred cceEEEEeCCCC-CceEEEecCCCCCEecCCCCCc-----------------------------------------ccce
Confidence 368999999765 4589999999999999988776 4889
Q ss_pred eeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEe
Q 011881 173 CAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFD 252 (475)
Q Consensus 173 ~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd 252 (475)
|++++++++||++||.+ ....+++++||+.+++|+.++++|.+|..|++++++++|||+||.+. +...++++++||
T Consensus 49 ~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~~~d 124 (306)
T 3ii7_A 49 AACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEV---GNSALYLFECYD 124 (306)
T ss_dssp CEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBT---TBSCCCCEEEEE
T ss_pred eEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCC---CCcEeeeEEEEe
Confidence 99999999999999988 66789999999999999999999999999999999999999999852 334678999999
Q ss_pred CCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCc----eeccceEEEeCCCCceEEcCCC
Q 011881 253 PTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPF----FVDVGGEIYDPDTNSWVEMPIG 328 (475)
Q Consensus 253 ~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~----~~~~~~~~yd~~~~~W~~~~~~ 328 (475)
+.+++|+.++++|.+|.. |+++.++++|||+||...... ..+ .++||+.+++|+++++
T Consensus 125 ~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~--~~~yd~~~~~W~~~~~- 186 (306)
T 3ii7_A 125 TRTESWHTKPSMLTQRCS---------------HGMVEANGLIYVCGGSLGNNVSGRVLNS--CEVYDPATETWTELCP- 186 (306)
T ss_dssp TTTTEEEEECCCSSCCBS---------------CEEEEETTEEEEECCEESCTTTCEECCC--EEEEETTTTEEEEECC-
T ss_pred CCCCceEeCCCCcCCcce---------------eEEEEECCEEEEECCCCCCCCcccccce--EEEeCCCCCeEEECCC-
Confidence 999999999999999998 899999999999999766543 333 4999999999999985
Q ss_pred CCCCCCCccCCCeEEEEECCeEEEEcCCCCC-CCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEee
Q 011881 329 MGEGWPARQAGTKLSVVLDGELYAFDPSSSL-NSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTK 407 (475)
Q Consensus 329 ~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG 407 (475)
+ |.++.+++ +++++++|||+||.+.. ..+++++||+++++|+.+. .++.+|..++++.++++|||+||
T Consensus 187 ~----p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~i~v~GG 255 (306)
T 3ii7_A 187 M----IEARKNHG-LVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS------PMPWKGVTVKCAAVGSIVYVLAG 255 (306)
T ss_dssp C----SSCCBSCE-EEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECC------CCSCCBSCCEEEEETTEEEEEEC
T ss_pred c----cchhhcce-EEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC------CCCCCccceeEEEECCEEEEEeC
Confidence 4 44566655 67889999999997543 2468999999999999985 35678889999999999999999
Q ss_pred cCCCCeeEEEecCCCCCCCCccccccCCcccccccccccccccceeeeeeecccCCCcc
Q 011881 408 DASRNISILRADPRDHLGSTSSSSVSLSADSLHEHSDSLAESDTVVWKAIATRNFGSAE 466 (475)
Q Consensus 408 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~ 466 (475)
..+.. .....|.||+++++|+.++.++.++..
T Consensus 256 ~~~~~---------------------------~~~~~~~yd~~~~~W~~~~~~~~~r~~ 287 (306)
T 3ii7_A 256 FQGVG---------------------------RLGHILEYNTETDKWVANSKVRAFPVT 287 (306)
T ss_dssp BCSSS---------------------------BCCEEEEEETTTTEEEEEEEEECCSCT
T ss_pred cCCCe---------------------------eeeeEEEEcCCCCeEEeCCCcccccce
Confidence 76542 111245789999999999986555543
No 4
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.9e-43 Score=337.87 Aligned_cols=273 Identities=21% Similarity=0.377 Sum_probs=230.5
Q ss_pred CccEEEEEEe-ecCCc--eeeEEecCCCCceeeCCCCCCCcchhhhcccccccceeeccceeeeeEeeecccCCCCCCCC
Q 011881 92 TEEWLYILTK-VSDDR--LLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWNDTLPQM 168 (475)
Q Consensus 92 ~~~~lyv~gg-~~~~~--~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 168 (475)
.++.||++|| ..... .++++||+.+++|..++++|.
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~----------------------------------------- 51 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITR----------------------------------------- 51 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSS-----------------------------------------
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCCh-----------------------------------------
Confidence 4679999999 44322 378999999999999987775
Q ss_pred CccceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc---EEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccC
Q 011881 169 PFCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT---WNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPL 245 (475)
Q Consensus 169 pr~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~---W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 245 (475)
+|..|++++.+++||++||.++....+++++||+.+++ |+.++++|.+|..|++++++++||++||... ...+
T Consensus 52 ~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~----~~~~ 127 (301)
T 2vpj_A 52 KRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDG----SRRH 127 (301)
T ss_dssp CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCS----SCBC
T ss_pred hhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCC----Cccc
Confidence 38889999999999999999877788999999999999 9999999999999999999999999999852 2357
Q ss_pred CeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEc
Q 011881 246 QSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEM 325 (475)
Q Consensus 246 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~ 325 (475)
+++++||+.+++|+.++++|.+|.. |++++++++||++||.++.....++ ++||+.+++|+++
T Consensus 128 ~~~~~~d~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv~GG~~~~~~~~~~--~~~d~~~~~W~~~ 190 (301)
T 2vpj_A 128 TSMERYDPNIDQWSMLGDMQTAREG---------------AGLVVASGVIYCLGGYDGLNILNSV--EKYDPHTGHWTNV 190 (301)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCBS---------------CEEEEETTEEEEECCBCSSCBCCCE--EEEETTTTEEEEE
T ss_pred ceEEEEcCCCCeEEECCCCCCCccc---------------ceEEEECCEEEEECCCCCCcccceE--EEEeCCCCcEEeC
Confidence 8999999999999999999999998 8999999999999998776555444 9999999999999
Q ss_pred CCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCC-CCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEE
Q 011881 326 PIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLN-SAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHV 404 (475)
Q Consensus 326 ~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~-~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v 404 (475)
++ + |.++.+++ +++++++|||+||.+... .+++++||+++++|+.+. .++.+|..|+++.++++|||
T Consensus 191 ~~-~----p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~i~v 258 (301)
T 2vpj_A 191 TP-M----ATKRSGAG-VALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT------SMTTPRCYVGATVLRGRLYA 258 (301)
T ss_dssp CC-C----SSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC------CCSSCCBSCEEEEETTEEEE
T ss_pred CC-C----Ccccccce-EEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC------CCCCcccceeEEEECCEEEE
Confidence 75 4 44555555 778899999999976443 579999999999999985 35677889999999999999
Q ss_pred EeecCCCCeeEEEecCCCCCCCCccccccCCcccccccccccccccceeeeeeecccCCCc
Q 011881 405 LTKDASRNISILRADPRDHLGSTSSSSVSLSADSLHEHSDSLAESDTVVWKAIATRNFGSA 465 (475)
Q Consensus 405 ~GG~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~ 465 (475)
+||..... .....+.||+++++|+.++.++..+.
T Consensus 259 ~GG~~~~~---------------------------~~~~v~~yd~~~~~W~~~~~~~~~r~ 292 (301)
T 2vpj_A 259 IAGYDGNS---------------------------LLSSIECYDPIIDSWEVVTSMGTQRC 292 (301)
T ss_dssp ECCBCSSS---------------------------BEEEEEEEETTTTEEEEEEEEEEEEE
T ss_pred EcCcCCCc---------------------------ccccEEEEcCCCCeEEEcCCCCcccc
Confidence 99976543 11123478999999999998655554
No 5
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=3.8e-41 Score=327.55 Aligned_cols=283 Identities=17% Similarity=0.276 Sum_probs=222.9
Q ss_pred ccEEEEEEeecCCceeeEEecCCCCceeeCCCCCCCcchhhhcccccccceeeccceeeeeEeeecccCCCCCCCCCccc
Q 011881 93 EEWLYILTKVSDDRLLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWNDTLPQMPFCG 172 (475)
Q Consensus 93 ~~~lyv~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~pr~~ 172 (475)
++.||++|| ..+++|||.+++|.. +++|. |.||.+
T Consensus 4 ~~~l~~~GG-----~~~~~yd~~~~~W~~-~~~~~---------------------------------------p~~r~~ 38 (315)
T 4asc_A 4 QDLIFMISE-----EGAVAYDPAANECYC-ASLSS---------------------------------------QVPKNH 38 (315)
T ss_dssp EEEEEEEET-----TEEEEEETTTTEEEE-EECCC---------------------------------------CSCSSE
T ss_pred ceEEEEEcC-----CceEEECCCCCeEec-CCCCC---------------------------------------CCCccc
Confidence 468999998 368999999999986 55543 346999
Q ss_pred eeEEEeCCEEEEEcCCC----C--CCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCC
Q 011881 173 CAIGAVDGCLYVLGGFS----R--TSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQ 246 (475)
Q Consensus 173 ~~~~~~~~~lyv~GG~~----~--~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 246 (475)
|++++.+++||++||.. . ....+++++||+.+++|+.+++||.+|.+|++++++++|||+||.... ++...++
T Consensus 39 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~ 117 (315)
T 4asc_A 39 VSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIK-DGERCLD 117 (315)
T ss_dssp EEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESS-TTCCBCC
T ss_pred eEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCC-CCCcccc
Confidence 99999999999999962 1 233566999999999999999999999999999999999999998632 1234678
Q ss_pred eEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccC-CCCCceeccceEEEeCCCCceEEc
Q 011881 247 SAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSL-YSWPFFVDVGGEIYDPDTNSWVEM 325 (475)
Q Consensus 247 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~~~yd~~~~~W~~~ 325 (475)
++++||+.+++|+.++++|.+|.. |++++++++|||+||. .......+ .++||+.+++|+++
T Consensus 118 ~~~~~d~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv~GG~~~~~~~~~~--~~~yd~~~~~W~~~ 180 (315)
T 4asc_A 118 SVMCYDRLSFKWGESDPLPYVVYG---------------HTVLSHMDLVYVIGGKGSDRKCLNK--MCVYDPKKFEWKEL 180 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBS---------------CEEEEETTEEEEECCBCTTSCBCCC--EEEEETTTTEEEEC
T ss_pred eEEEECCCCCcEeECCCCCCcccc---------------eeEEEECCEEEEEeCCCCCCcccce--EEEEeCCCCeEEEC
Confidence 999999999999999999999998 8999999999999998 33333443 49999999999999
Q ss_pred CCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCC-CCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEE
Q 011881 326 PIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSL-NSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHV 404 (475)
Q Consensus 326 ~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v 404 (475)
++ + |.++.+++ +++++++|||+||.+.. ..+++++||+++++|+.+. .++.+|..|+++.++++|||
T Consensus 181 ~~-~----p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~l~v 248 (315)
T 4asc_A 181 AP-M----QTARSLFG-ATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE------AFPQERSSLSLVSLVGTLYA 248 (315)
T ss_dssp CC-C----SSCCBSCE-EEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC------CCSSCCBSCEEEEETTEEEE
T ss_pred CC-C----CCchhceE-EEEECCEEEEEeccCCCCccceEEEEECCCCeEEECC------CCCCcccceeEEEECCEEEE
Confidence 86 4 44566665 67889999999997543 2468999999999999985 36678999999999999999
Q ss_pred EeecCCCCeeEEEecCCCCCCCCccccccCCcccccccccccccccceeeeeeecc-cCCCccee
Q 011881 405 LTKDASRNISILRADPRDHLGSTSSSSVSLSADSLHEHSDSLAESDTVVWKAIATR-NFGSAELV 468 (475)
Q Consensus 405 ~GG~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-~~~~~~~~ 468 (475)
+||...... . . +. .........|.||+++++|+.+.+. ++++..++
T Consensus 249 ~GG~~~~~~-------~-~-~~---------~~~~~~~~v~~yd~~~~~W~~~~~~~r~~~~~~~ 295 (315)
T 4asc_A 249 IGGFATLET-------E-S-GE---------LVPTELNDIWRYNEEEKKWEGVLREIAYAAGATF 295 (315)
T ss_dssp EEEEEEEEC-------T-T-SC---------EEEEEEEEEEEEETTTTEEEEEESCSSCCSSCEE
T ss_pred ECCccccCc-------C-C-cc---------ccccccCcEEEecCCCChhhhhccCCcCccceEE
Confidence 999743210 0 0 00 0001122345899999999999763 44444333
No 6
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=7.1e-41 Score=326.09 Aligned_cols=288 Identities=19% Similarity=0.298 Sum_probs=223.4
Q ss_pred CccEEEEEEeecCCceeeEEecCCCCceeeCCCCCCCcchhhhcccccccceeeccceeeeeEeeecccCCCCCCCCCcc
Q 011881 92 TEEWLYILTKVSDDRLLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWNDTLPQMPFC 171 (475)
Q Consensus 92 ~~~~lyv~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~pr~ 171 (475)
.++.||++||. .+++|||.+++|.. ++++. |.||.
T Consensus 14 ~~~~i~~~GG~-----~~~~yd~~~~~W~~-~~~~~---------------------------------------~~~r~ 48 (318)
T 2woz_A 14 VKDLILLVNDT-----AAVAYDPMENECYL-TALAE---------------------------------------QIPRN 48 (318)
T ss_dssp EEEEEEEECSS-----EEEEEETTTTEEEE-EEECT---------------------------------------TSCSS
T ss_pred ecchhhhcccc-----ceEEECCCCCceec-ccCCc---------------------------------------cCCcc
Confidence 35689999984 47999999999988 33432 34689
Q ss_pred ceeEEEeCCEEEEEcCCCC------CCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccC
Q 011881 172 GCAIGAVDGCLYVLGGFSR------TSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPL 245 (475)
Q Consensus 172 ~~~~~~~~~~lyv~GG~~~------~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 245 (475)
.|++++.+++||++||... ....+++++||+.+++|+.+++||.+|..|++++++++|||+||.... +...+
T Consensus 49 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~ 126 (318)
T 2woz_A 49 HSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQ--TEASL 126 (318)
T ss_dssp EEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTT--TCCEE
T ss_pred ceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCC--CCccc
Confidence 9999999999999999631 123456999999999999999999999999999999999999998531 23457
Q ss_pred CeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCC-ceeccceEEEeCCCCceEE
Q 011881 246 QSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWP-FFVDVGGEIYDPDTNSWVE 324 (475)
Q Consensus 246 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~yd~~~~~W~~ 324 (475)
+++++||+.+++|+.++++|.+|.. |++++++++|||+||..... ...+ .++||+.+++|++
T Consensus 127 ~~~~~yd~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv~GG~~~~~~~~~~--~~~yd~~~~~W~~ 189 (318)
T 2woz_A 127 DSVLCYDPVAAKWSEVKNLPIKVYG---------------HNVISHNGMIYCLGGKTDDKKCTNR--VFIYNPKKGDWKD 189 (318)
T ss_dssp EEEEEEETTTTEEEEECCCSSCEES---------------CEEEEETTEEEEECCEESSSCBCCC--EEEEETTTTEEEE
T ss_pred ceEEEEeCCCCCEeECCCCCCcccc---------------cEEEEECCEEEEEcCCCCCCCccce--EEEEcCCCCEEEE
Confidence 8999999999999999999999998 89999999999999975432 2333 4999999999999
Q ss_pred cCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCC-CCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEE
Q 011881 325 MPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSL-NSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLH 403 (475)
Q Consensus 325 ~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~ 403 (475)
+++ + |.++.+++ +++++++|||+||.... ..+++++||+++++|+.+. .+|.+|..|+++.++++||
T Consensus 190 ~~~-~----p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~i~ 257 (318)
T 2woz_A 190 LAP-M----KTPRSMFG-VAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT------EFPQERSSISLVSLAGSLY 257 (318)
T ss_dssp ECC-C----SSCCBSCE-EEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECC------CCSSCCBSCEEEEETTEEE
T ss_pred CCC-C----CCCcccce-EEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECC------CCCCcccceEEEEECCEEE
Confidence 975 4 44555555 67899999999997543 2368999999999999985 3567788999999999999
Q ss_pred EEeecCCCCeeEEEecCCCCCCCCccccccCCcccccccccccccccceeeeeeec-ccCCCcceeeeEEe
Q 011881 404 VLTKDASRNISILRADPRDHLGSTSSSSVSLSADSLHEHSDSLAESDTVVWKAIAT-RNFGSAELVSCQVL 473 (475)
Q Consensus 404 v~GG~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-~~~~~~~~~~~~~~ 473 (475)
|+||.......- .+.. .......|.||+++++|+.+.+ .++++..++....|
T Consensus 258 v~GG~~~~~~~~--~~~~----------------~~~~~~v~~yd~~~~~W~~~~~~~r~~~~~~~~~~~i 310 (318)
T 2woz_A 258 AIGGFAMIQLES--KEFA----------------PTEVNDIWKYEDDKKEWAGMLKEIRYASGASCLATRL 310 (318)
T ss_dssp EECCBCCBC------CCB----------------CCBCCCEEEEETTTTEEEEEESCCGGGTTCEEEEEEE
T ss_pred EECCeeccCCCC--ceec----------------cceeeeEEEEeCCCCEehhhcccccccccceeeCCEE
Confidence 999976542000 0000 0122345689999999999954 34444444433333
No 7
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=9.3e-40 Score=323.28 Aligned_cols=278 Identities=19% Similarity=0.250 Sum_probs=210.6
Q ss_pred CccEEEEEEeecCCceeeEEecCC--CCceeeCCCCCCCcchhhhcccccccceeeccceeeeeEeeecccCCCCCCCCC
Q 011881 92 TEEWLYILTKVSDDRLLWHALDPL--SKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWNDTLPQMP 169 (475)
Q Consensus 92 ~~~~lyv~gg~~~~~~~~~~yd~~--~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p 169 (475)
.++.|||+||...+ ++++||+. +++|..++++|.. |
T Consensus 18 ~~~~iyv~GG~~~~--~~~~~d~~~~~~~W~~~~~~p~~----------------------------------------~ 55 (357)
T 2uvk_A 18 DNDTVYIGLGSAGT--AWYKLDTQAKDKKWTALAAFPGG----------------------------------------P 55 (357)
T ss_dssp ETTEEEEECGGGTT--CEEEEETTSSSCCEEECCCCTTC----------------------------------------C
T ss_pred ECCEEEEEeCcCCC--eEEEEccccCCCCeeECCCCCCC----------------------------------------c
Confidence 48999999997654 78999998 4999999988732 4
Q ss_pred ccceeEEEeCCEEEEEcCC-C----CCCCcceEEEEeCCCCcEEeCCCCC-CccceeeeEEECCEEEEEeceecCCC---
Q 011881 170 FCGCAIGAVDGCLYVLGGF-S----RTSAMRCVRRYDPIANTWNEATSMS-VGRAYCKTGILNDKLYVVGGVSRARG--- 240 (475)
Q Consensus 170 r~~~~~~~~~~~lyv~GG~-~----~~~~~~~~~~yd~~t~~W~~~~~~p-~~R~~~~~~~~~~~iyv~GG~~~~~~--- 240 (475)
|..|++++++++|||+||. + ....++++++||+.+++|+.+++|+ .+|.+|++++++++|||+||.+....
T Consensus 56 R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 135 (357)
T 2uvk_A 56 RDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGY 135 (357)
T ss_dssp CBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHH
T ss_pred CccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCccc
Confidence 8999999999999999998 3 1345789999999999999999998 99999999999999999999742100
Q ss_pred ---------------------------CcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCC
Q 011881 241 ---------------------------GLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMG 293 (475)
Q Consensus 241 ---------------------------~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (475)
....++++++||+.+++|+.++++|.++... ++++++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~--------------~~~~~~~~ 201 (357)
T 2uvk_A 136 FEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAG--------------AAVVNKGD 201 (357)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBS--------------CEEEEETT
T ss_pred ccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCccc--------------ccEEEECC
Confidence 0013689999999999999999999765431 78889999
Q ss_pred EEEEeccCCCCCceeccceEEEeC--CCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCC------------
Q 011881 294 RLCVPQSLYSWPFFVDVGGEIYDP--DTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSL------------ 359 (475)
Q Consensus 294 ~iyv~GG~~~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~------------ 359 (475)
+|||+||.+..... ....++||+ ++++|+++++ ++. |+.+.+++ +++++++|||+||....
T Consensus 202 ~iyv~GG~~~~~~~-~~~v~~~d~d~~~~~W~~~~~-~~~--~~~~~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~g~~~ 276 (357)
T 2uvk_A 202 KTWLINGEAKPGLR-TDAVFELDFTGNNLKWNKLAP-VSS--PDGVAGGF-AGISNDSLIFAGGAGFKGSRENYQNGKNY 276 (357)
T ss_dssp EEEEECCEEETTEE-CCCEEEEECC---CEEEECCC-SST--TTCCBSCE-EEEETTEEEEECCEECTTHHHHHHTTCSS
T ss_pred EEEEEeeecCCCcc-cCceEEEEecCCCCcEEecCC-CCC--Ccccccce-EEEECCEEEEEcCccccCCccccccccee
Confidence 99999997643221 133477876 9999999986 432 55555554 78899999999995321
Q ss_pred ------CCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCCCCCCCCcccccc
Q 011881 360 ------NSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPRDHLGSTSSSSVS 433 (475)
Q Consensus 360 ------~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~~~~~~~~~~~~~ 433 (475)
..+++++||+++++|+++. .++.+|..|+++.++++||||||...+...
T Consensus 277 ~~~~~~~~~~~~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~------------------- 331 (357)
T 2uvk_A 277 AHEGLKKSYSTDIHLWHNGKWDKSG------ELSQGRAYGVSLPWNNSLLIIGGETAGGKA------------------- 331 (357)
T ss_dssp TTTTCCCEECCEEEECC---CEEEE------ECSSCCBSSEEEEETTEEEEEEEECGGGCE-------------------
T ss_pred ccccccceeeEEEEecCCCceeeCC------CCCCCcccceeEEeCCEEEEEeeeCCCCCE-------------------
Confidence 1257999999999999984 366788889999999999999998765411
Q ss_pred CCcccccccccccccccceeeeeeecccC
Q 011881 434 LSADSLHEHSDSLAESDTVVWKAIATRNF 462 (475)
Q Consensus 434 ~~~~~~~~~~~~~~d~~~~~W~~~~~~~~ 462 (475)
....+.++.++++|.++.+.+.
T Consensus 332 -------~~~v~~l~~~~~~~~~~~~~~~ 353 (357)
T 2uvk_A 332 -------VTDSVLITVKDNKVTVQNLEHH 353 (357)
T ss_dssp -------EEEEEEEEC-CCSCEEEC----
T ss_pred -------eeeEEEEEEcCcEeEeeecccc
Confidence 1123356788899999887543
No 8
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=5.6e-39 Score=310.24 Aligned_cols=260 Identities=21% Similarity=0.385 Sum_probs=214.3
Q ss_pred hhhhhhhhcCChhhHHhhh--ccCCCccEEEEEEeecCCc--eeeEEecCCCCceeeCCCCCCCcchhhhccccccccee
Q 011881 69 VSRKWKATVTSPELFEVRK--ELGTTEEWLYILTKVSDDR--LLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNM 144 (475)
Q Consensus 69 vck~W~~l~~s~~~~~~r~--~~~~~~~~lyv~gg~~~~~--~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~ 144 (475)
..++|..+. .++..|. .....++.||++||..... .++++||+.+++|..++++|.+
T Consensus 38 ~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---------------- 98 (302)
T 2xn4_A 38 KEERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDR---------------- 98 (302)
T ss_dssp TTTEEEEEC---CCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSC----------------
T ss_pred cCCcEeEcc---cCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcc----------------
Confidence 346788873 3333333 3334588999999976443 3789999999999999988764
Q ss_pred eccceeeeeEeeecccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEE
Q 011881 145 VGSGIKIAEVVRGWLGWNDTLPQMPFCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGI 224 (475)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~ 224 (475)
|..|++++++++||++||.++...++++++||+.+++|+.+++||.+|..|++++
T Consensus 99 -------------------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 153 (302)
T 2xn4_A 99 -------------------------RSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV 153 (302)
T ss_dssp -------------------------CBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred -------------------------ccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE
Confidence 8899999999999999999877778999999999999999999999999999999
Q ss_pred ECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCC
Q 011881 225 LNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSW 304 (475)
Q Consensus 225 ~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~ 304 (475)
++++||++||..... ...++++++||+.+++|+.++++|.+|.. |++++++++|||+||.++.
T Consensus 154 ~~~~iyv~GG~~~~~--~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv~GG~~~~ 216 (302)
T 2xn4_A 154 VGGLLYAVGGYDVAS--RQCLSTVECYNATTNEWTYIAEMSTRRSG---------------AGVGVLNNLLYAVGGHDGP 216 (302)
T ss_dssp ETTEEEEECCEETTT--TEECCCEEEEETTTTEEEEECCCSSCCBS---------------CEEEEETTEEEEECCBSSS
T ss_pred ECCEEEEEeCCCCCC--CccccEEEEEeCCCCcEEECCCCcccccc---------------ccEEEECCEEEEECCCCCC
Confidence 999999999986321 13478999999999999999999999998 8999999999999998765
Q ss_pred CceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCC-CCCeEEEEeCCCCcEEEcCCcCcc
Q 011881 305 PFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSL-NSAKIKVYDQKEDTWKVVIGKVPI 383 (475)
Q Consensus 305 ~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~~~~p~ 383 (475)
....+ .++||+++++|+.+++ + |.++.+++ +++++++|||+||.+.. ..+++++||+++++|+.++.
T Consensus 217 ~~~~~--~~~yd~~~~~W~~~~~-~----~~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~---- 284 (302)
T 2xn4_A 217 LVRKS--VEVYDPTTNAWRQVAD-M----NMCRRNAG-VCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSS---- 284 (302)
T ss_dssp SBCCC--EEEEETTTTEEEEECC-C----SSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECSS----
T ss_pred cccce--EEEEeCCCCCEeeCCC-C----CCccccCe-EEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECCc----
Confidence 44443 4999999999999986 4 33455555 77889999999997543 34789999999999999853
Q ss_pred ccCCCCCCCeEEEEeCCeE
Q 011881 384 RDFADSESPYLLSAFHGKL 402 (475)
Q Consensus 384 ~~~~~~r~~~~~~~~~~~l 402 (475)
.++.+|..|++++++++|
T Consensus 285 -~~~~~r~~~~~~~~~~~i 302 (302)
T 2xn4_A 285 -CMSTGRSYAGVTVIDKRL 302 (302)
T ss_dssp -CCSSCCBSCEEEEEEC--
T ss_pred -ccCcccccceEEEecccC
Confidence 356789999999998875
No 9
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=315.71 Aligned_cols=262 Identities=22% Similarity=0.370 Sum_probs=214.6
Q ss_pred hhhhhhhcCCh-hhHHhhhccCCCccEEEEEEeec----C-C---ceeeEEecCCCCceeeCCCCCCCcchhhhcccccc
Q 011881 70 SRKWKATVTSP-ELFEVRKELGTTEEWLYILTKVS----D-D---RLLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSG 140 (475)
Q Consensus 70 ck~W~~l~~s~-~~~~~r~~~~~~~~~lyv~gg~~----~-~---~~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~ 140 (475)
.++|.. ...| ..++..+.....++.||++||.. . . ...+++||+.+++|..++++|.+
T Consensus 22 ~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~------------ 88 (315)
T 4asc_A 22 ANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSP------------ 88 (315)
T ss_dssp TTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSC------------
T ss_pred CCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcc------------
Confidence 467875 2222 12333334445689999999962 1 1 12589999999999999888764
Q ss_pred cceeeccceeeeeEeeecccCCCCCCCCCccceeEEEeCCEEEEEcCCC---CCCCcceEEEEeCCCCcEEeCCCCCCcc
Q 011881 141 LWNMVGSGIKIAEVVRGWLGWNDTLPQMPFCGCAIGAVDGCLYVLGGFS---RTSAMRCVRRYDPIANTWNEATSMSVGR 217 (475)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~---~~~~~~~~~~yd~~t~~W~~~~~~p~~R 217 (475)
|..|++++++++||++||.+ +....+++++||+.+++|+.++++|.+|
T Consensus 89 -----------------------------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 139 (315)
T 4asc_A 89 -----------------------------RCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV 139 (315)
T ss_dssp -----------------------------EESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred -----------------------------hhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc
Confidence 88999999999999999974 3567899999999999999999999999
Q ss_pred ceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEE
Q 011881 218 AYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCV 297 (475)
Q Consensus 218 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv 297 (475)
.+|++++++++|||+||... ....++++++||+.+++|+.+++||.+|.. |++++++++|||
T Consensus 140 ~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv 201 (315)
T 4asc_A 140 YGHTVLSHMDLVYVIGGKGS---DRKCLNKMCVYDPKKFEWKELAPMQTARSL---------------FGATVHDGRIIV 201 (315)
T ss_dssp BSCEEEEETTEEEEECCBCT---TSCBCCCEEEEETTTTEEEECCCCSSCCBS---------------CEEEEETTEEEE
T ss_pred cceeEEEECCEEEEEeCCCC---CCcccceEEEEeCCCCeEEECCCCCCchhc---------------eEEEEECCEEEE
Confidence 99999999999999999842 334688999999999999999999999998 899999999999
Q ss_pred eccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCC----------CCCCeEEEE
Q 011881 298 PQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSS----------LNSAKIKVY 367 (475)
Q Consensus 298 ~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~----------~~~~~v~~y 367 (475)
+||.+......++ ++||+++++|+.+++ + |.++.+++ +++++++|||+||.+. ...+++++|
T Consensus 202 ~GG~~~~~~~~~~--~~yd~~~~~W~~~~~-~----p~~r~~~~-~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~y 273 (315)
T 4asc_A 202 AAGVTDTGLTSSA--EVYSITDNKWAPFEA-F----PQERSSLS-LVSLVGTLYAIGGFATLETESGELVPTELNDIWRY 273 (315)
T ss_dssp EEEECSSSEEEEE--EEEETTTTEEEEECC-C----SSCCBSCE-EEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred EeccCCCCccceE--EEEECCCCeEEECCC-C----CCccccee-EEEECCEEEEECCccccCcCCccccccccCcEEEe
Confidence 9998776555444 999999999999976 3 44566665 6788999999999742 123689999
Q ss_pred eCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEee
Q 011881 368 DQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTK 407 (475)
Q Consensus 368 d~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG 407 (475)
|+++++|+.+. +.+|..+++++++++||++..
T Consensus 274 d~~~~~W~~~~--------~~~r~~~~~~~~~~~l~v~~~ 305 (315)
T 4asc_A 274 NEEEKKWEGVL--------REIAYAAGATFLPVRLNVLRL 305 (315)
T ss_dssp ETTTTEEEEEE--------SCSSCCSSCEEEEEEECGGGS
T ss_pred cCCCChhhhhc--------cCCcCccceEEeCCEEEEEEe
Confidence 99999999982 456778899999999999865
No 10
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=3.5e-39 Score=314.07 Aligned_cols=263 Identities=21% Similarity=0.403 Sum_probs=214.2
Q ss_pred hhhhhhhhcCChhhHHhhhccCCCccEEEEEEeecC---C-----ceeeEEecCCCCceeeCCCCCCCcchhhhcccccc
Q 011881 69 VSRKWKATVTSPELFEVRKELGTTEEWLYILTKVSD---D-----RLLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSG 140 (475)
Q Consensus 69 vck~W~~l~~s~~~~~~r~~~~~~~~~lyv~gg~~~---~-----~~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~ 140 (475)
..++|.........++..+.....++.||++||... . ...+++||+.+++|..++++|.+
T Consensus 32 ~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~------------ 99 (318)
T 2woz_A 32 MENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA------------ 99 (318)
T ss_dssp TTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC------------
T ss_pred CCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc------------
Confidence 346787621111123333444456899999999521 1 11489999999999999888764
Q ss_pred cceeeccceeeeeEeeecccCCCCCCCCCccceeEEEeCCEEEEEcCCC--CCCCcceEEEEeCCCCcEEeCCCCCCccc
Q 011881 141 LWNMVGSGIKIAEVVRGWLGWNDTLPQMPFCGCAIGAVDGCLYVLGGFS--RTSAMRCVRRYDPIANTWNEATSMSVGRA 218 (475)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~yd~~t~~W~~~~~~p~~R~ 218 (475)
|..|++++++++||++||.+ +...++++++||+.+++|+.++++|.+|.
T Consensus 100 -----------------------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 150 (318)
T 2woz_A 100 -----------------------------RCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVY 150 (318)
T ss_dssp -----------------------------BCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEE
T ss_pred -----------------------------ccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccc
Confidence 88999999999999999986 45668899999999999999999999999
Q ss_pred eeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEe
Q 011881 219 YCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVP 298 (475)
Q Consensus 219 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~ 298 (475)
+|++++++++|||+||.... ...++++++||+.+++|+.++++|.+|.. |++++++++|||+
T Consensus 151 ~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv~ 212 (318)
T 2woz_A 151 GHNVISHNGMIYCLGGKTDD---KKCTNRVFIYNPKKGDWKDLAPMKTPRSM---------------FGVAIHKGKIVIA 212 (318)
T ss_dssp SCEEEEETTEEEEECCEESS---SCBCCCEEEEETTTTEEEEECCCSSCCBS---------------CEEEEETTEEEEE
T ss_pred ccEEEEECCEEEEEcCCCCC---CCccceEEEEcCCCCEEEECCCCCCCccc---------------ceEEEECCEEEEE
Confidence 99999999999999998632 34578999999999999999999999998 8999999999999
Q ss_pred ccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCC----------CCCCeEEEEe
Q 011881 299 QSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSS----------LNSAKIKVYD 368 (475)
Q Consensus 299 GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~----------~~~~~v~~yd 368 (475)
||.+......++ ++||+++++|+++++ + |.++.+++ +++++++||++||... ...+++++||
T Consensus 213 GG~~~~~~~~~~--~~yd~~~~~W~~~~~-~----p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd 284 (318)
T 2woz_A 213 GGVTEDGLSASV--EAFDLKTNKWEVMTE-F----PQERSSIS-LVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYE 284 (318)
T ss_dssp EEEETTEEEEEE--EEEETTTCCEEECCC-C----SSCCBSCE-EEEETTEEEEECCBCCBC----CCBCCBCCCEEEEE
T ss_pred cCcCCCCccceE--EEEECCCCeEEECCC-C----CCcccceE-EEEECCEEEEECCeeccCCCCceeccceeeeEEEEe
Confidence 998765544444 999999999999976 4 44556555 7889999999999753 2247999999
Q ss_pred CCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEe
Q 011881 369 QKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLT 406 (475)
Q Consensus 369 ~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~G 406 (475)
+++++|+++ ++.+|..|+++.++++|||+.
T Consensus 285 ~~~~~W~~~--------~~~~r~~~~~~~~~~~iyi~~ 314 (318)
T 2woz_A 285 DDKKEWAGM--------LKEIRYASGASCLATRLNLFK 314 (318)
T ss_dssp TTTTEEEEE--------ESCCGGGTTCEEEEEEEEGGG
T ss_pred CCCCEehhh--------cccccccccceeeCCEEEEEE
Confidence 999999997 246678889999999999874
No 11
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=4.4e-38 Score=304.95 Aligned_cols=256 Identities=21% Similarity=0.384 Sum_probs=212.1
Q ss_pred HHHhhhhhhhhcCChhhHHhhh--ccCCCccEEEEEEeec----CCc--eeeEEecCCCCceeeCCCCCCCcchhhhccc
Q 011881 66 LRAVSRKWKATVTSPELFEVRK--ELGTTEEWLYILTKVS----DDR--LLWHALDPLSKRWQRLPPLPNVVDEEESRKS 137 (475)
Q Consensus 66 l~~vck~W~~l~~s~~~~~~r~--~~~~~~~~lyv~gg~~----~~~--~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~ 137 (475)
+....++|..+. .++..|. .....++.||++||.. ... .++++||+.+++|..++++|.+
T Consensus 44 ~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--------- 111 (308)
T 1zgk_A 44 YNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP--------- 111 (308)
T ss_dssp EETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC---------
T ss_pred EcCCCCeEeECC---CCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC---------
Confidence 334567899873 3333343 3334588999999973 221 2789999999999999888764
Q ss_pred ccccceeeccceeeeeEeeecccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCcc
Q 011881 138 SSGLWNMVGSGIKIAEVVRGWLGWNDTLPQMPFCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGR 217 (475)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R 217 (475)
|..|++++++++||++||.+....++++++||+.+++|+.++++|.+|
T Consensus 112 --------------------------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 159 (308)
T 1zgk_A 112 --------------------------------RNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR 159 (308)
T ss_dssp --------------------------------CBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC
T ss_pred --------------------------------ccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccc
Confidence 889999999999999999887777889999999999999999999999
Q ss_pred ceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEE
Q 011881 218 AYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCV 297 (475)
Q Consensus 218 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv 297 (475)
..|++++++++||++||.+.. ..++++++||+.+++|+.++++|.+|.. +++++++++|||
T Consensus 160 ~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv 220 (308)
T 1zgk_A 160 IGVGVAVLNRLLYAVGGFDGT----NRLNSAECYYPERNEWRMITAMNTIRSG---------------AGVCVLHNCIYA 220 (308)
T ss_dssp BSCEEEEETTEEEEECCBCSS----CBCCCEEEEETTTTEEEECCCCSSCCBS---------------CEEEEETTEEEE
T ss_pred cceEEEEECCEEEEEeCCCCC----CcCceEEEEeCCCCeEeeCCCCCCcccc---------------ceEEEECCEEEE
Confidence 999999999999999998532 3478999999999999999999999998 889999999999
Q ss_pred eccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCC-CCCeEEEEeCCCCcEEE
Q 011881 298 PQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSL-NSAKIKVYDQKEDTWKV 376 (475)
Q Consensus 298 ~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~ 376 (475)
+||.+......++ ++||+++++|+++++ + |.++.+++ +++++++|||+||.+.. ..+++++||+++++|++
T Consensus 221 ~GG~~~~~~~~~v--~~yd~~~~~W~~~~~-~----p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 221 AGGYDGQDQLNSV--ERYDVETETWTFVAP-M----KHRRSALG-ITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp ECCBCSSSBCCCE--EEEETTTTEEEECCC-C----SSCCBSCE-EEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred EeCCCCCCccceE--EEEeCCCCcEEECCC-C----CCCccceE-EEEECCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 9998866555444 999999999999885 4 44555555 67889999999997543 35799999999999999
Q ss_pred cCCcCccccCCCCCCCeEEEEe
Q 011881 377 VIGKVPIRDFADSESPYLLSAF 398 (475)
Q Consensus 377 v~~~~p~~~~~~~r~~~~~~~~ 398 (475)
+. .++.+|..|+++++
T Consensus 293 ~~------~~p~~r~~~~~~~l 308 (308)
T 1zgk_A 293 VT------RMTSGRSGVGVAVT 308 (308)
T ss_dssp EE------ECSSCCBSCEEEEC
T ss_pred cC------CCCCCcccceeEeC
Confidence 84 46778888888753
No 12
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=305.91 Aligned_cols=262 Identities=21% Similarity=0.260 Sum_probs=212.6
Q ss_pred hhhhhhhhcCChhhHHhhhccCCCccEEEEEEeecCC-ceeeEEecCCCCceeeCCCCCCCcchhhhcccccccceeecc
Q 011881 69 VSRKWKATVTSPELFEVRKELGTTEEWLYILTKVSDD-RLLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGS 147 (475)
Q Consensus 69 vck~W~~l~~s~~~~~~r~~~~~~~~~lyv~gg~~~~-~~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (475)
..++|..+...|. ++..+.....++.||++||.... ..++++||+.+++|..++++|.
T Consensus 32 ~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~-------------------- 90 (306)
T 3ii7_A 32 KDYSWTDIRCPFE-KRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT-------------------- 90 (306)
T ss_dssp TTTEEEECCCCSC-CCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS--------------------
T ss_pred CCCCEecCCCCCc-ccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc--------------------
Confidence 4578988743222 22233333458899999998622 2378999999999999988776
Q ss_pred ceeeeeEeeecccCCCCCCCCCccceeEEEeCCEEEEEcCCC-CCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEEC
Q 011881 148 GIKIAEVVRGWLGWNDTLPQMPFCGCAIGAVDGCLYVLGGFS-RTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILN 226 (475)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~ 226 (475)
||..|++++++++||++||.+ +...++++++||+.+++|+.+++||.+|..|++++++
T Consensus 91 ---------------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~ 149 (306)
T 3ii7_A 91 ---------------------PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEAN 149 (306)
T ss_dssp ---------------------CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred ---------------------cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEEC
Confidence 488999999999999999997 5667899999999999999999999999999999999
Q ss_pred CEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCc
Q 011881 227 DKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPF 306 (475)
Q Consensus 227 ~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~ 306 (475)
++||++||..........++++++||+.+++|+.++++|.+|.. |++++++++|||+||.+....
T Consensus 150 ~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~i~v~GG~~~~~~ 214 (306)
T 3ii7_A 150 GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN---------------HGLVFVKDKIFAVGGQNGLGG 214 (306)
T ss_dssp TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS---------------CEEEEETTEEEEECCEETTEE
T ss_pred CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc---------------ceEEEECCEEEEEeCCCCCCC
Confidence 99999999864332222378999999999999999999999998 899999999999999876544
Q ss_pred eeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCC-CCCeEEEEeCCCCcEEEcCCcCcccc
Q 011881 307 FVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSL-NSAKIKVYDQKEDTWKVVIGKVPIRD 385 (475)
Q Consensus 307 ~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~~~~p~~~ 385 (475)
..++ ++||+++++|+.+++ + |.++.+++ +++++++|||+||.+.. ..+++++||+++++|+.+. .
T Consensus 215 ~~~~--~~yd~~~~~W~~~~~-~----p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~------~ 280 (306)
T 3ii7_A 215 LDNV--EYYDIKLNEWKMVSP-M----PWKGVTVK-CAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANS------K 280 (306)
T ss_dssp BCCE--EEEETTTTEEEECCC-C----SCCBSCCE-EEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEE------E
T ss_pred CceE--EEeeCCCCcEEECCC-C----CCCcccee-EEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCC------C
Confidence 4434 999999999999975 4 44566655 67889999999997543 4479999999999999985 3
Q ss_pred CCCCCCCeEEEEeCCe
Q 011881 386 FADSESPYLLSAFHGK 401 (475)
Q Consensus 386 ~~~~r~~~~~~~~~~~ 401 (475)
++.+|..|+++.+.+.
T Consensus 281 ~~~~r~~~~~~~~~~~ 296 (306)
T 3ii7_A 281 VRAFPVTSCLICVVDT 296 (306)
T ss_dssp EECCSCTTCEEEEEEC
T ss_pred cccccceeEEEEECCc
Confidence 5677888888766543
No 13
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=300.11 Aligned_cols=256 Identities=21% Similarity=0.369 Sum_probs=211.1
Q ss_pred hhhhhhhhcCChhhHHhhhccCCCccEEEEEEeecCCc--eeeEEecCCCCc---eeeCCCCCCCcchhhhcccccccce
Q 011881 69 VSRKWKATVTSPELFEVRKELGTTEEWLYILTKVSDDR--LLWHALDPLSKR---WQRLPPLPNVVDEEESRKSSSGLWN 143 (475)
Q Consensus 69 vck~W~~l~~s~~~~~~r~~~~~~~~~lyv~gg~~~~~--~~~~~yd~~~~~---W~~l~~~~~~~~~~~~~~~~~~~~~ 143 (475)
..++|..+...|. ++..+.....++.||++||..... .++++||+.+++ |..++++|.+
T Consensus 39 ~~~~W~~~~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~--------------- 102 (301)
T 2vpj_A 39 KTQEWSFLPSITR-KRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVR--------------- 102 (301)
T ss_dssp TTTEEEECCCCSS-CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSC---------------
T ss_pred CCCeEEeCCCCCh-hhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCC---------------
Confidence 4578888743322 222233334588999999976433 379999999999 9999887764
Q ss_pred eeccceeeeeEeeecccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeE
Q 011881 144 MVGSGIKIAEVVRGWLGWNDTLPQMPFCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTG 223 (475)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~ 223 (475)
|..|++++++++||++||.++...++++++||+.+++|+.++++|.+|..|+++
T Consensus 103 --------------------------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 156 (301)
T 2vpj_A 103 --------------------------RGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLV 156 (301)
T ss_dssp --------------------------CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEE
T ss_pred --------------------------ccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEE
Confidence 889999999999999999987777899999999999999999999999999999
Q ss_pred EECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCC
Q 011881 224 ILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYS 303 (475)
Q Consensus 224 ~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~ 303 (475)
+++++||++||.+. ...++++++||+.+++|+.++++|.+|.. ++++.++++|||+||.+.
T Consensus 157 ~~~~~iyv~GG~~~----~~~~~~~~~~d~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~i~v~GG~~~ 217 (301)
T 2vpj_A 157 VASGVIYCLGGYDG----LNILNSVEKYDPHTGHWTNVTPMATKRSG---------------AGVALLNDHIYVVGGFDG 217 (301)
T ss_dssp EETTEEEEECCBCS----SCBCCCEEEEETTTTEEEEECCCSSCCBS---------------CEEEEETTEEEEECCBCS
T ss_pred EECCEEEEECCCCC----CcccceEEEEeCCCCcEEeCCCCCccccc---------------ceEEEECCEEEEEeCCCC
Confidence 99999999999742 23678999999999999999999999998 899999999999999876
Q ss_pred CCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCC-CCeEEEEeCCCCcEEEcCCcCc
Q 011881 304 WPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLN-SAKIKVYDQKEDTWKVVIGKVP 382 (475)
Q Consensus 304 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~-~~~v~~yd~~~~~W~~v~~~~p 382 (475)
.....++ ++||+++++|++++. + |.++.+++ +++++++|||+||.+... .+++++||+++++|+.+.
T Consensus 218 ~~~~~~v--~~yd~~~~~W~~~~~-~----p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~---- 285 (301)
T 2vpj_A 218 TAHLSSV--EAYNIRTDSWTTVTS-M----TTPRCYVG-ATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVT---- 285 (301)
T ss_dssp SSBCCCE--EEEETTTTEEEEECC-C----SSCCBSCE-EEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEE----
T ss_pred CcccceE--EEEeCCCCcEEECCC-C----CCccccee-EEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcC----
Confidence 6544444 999999999999975 4 44555555 678899999999975432 368999999999999985
Q ss_pred cccCCCCCCCeEEEEeC
Q 011881 383 IRDFADSESPYLLSAFH 399 (475)
Q Consensus 383 ~~~~~~~r~~~~~~~~~ 399 (475)
.++.+|..|+++.++
T Consensus 286 --~~~~~r~~~~~~~~~ 300 (301)
T 2vpj_A 286 --SMGTQRCDAGVCVLR 300 (301)
T ss_dssp --EEEEEEESCEEEEEE
T ss_pred --CCCcccccceEEEeC
Confidence 355678888887764
No 14
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=6.6e-35 Score=288.47 Aligned_cols=259 Identities=14% Similarity=0.168 Sum_probs=186.4
Q ss_pred CCCccceeEEEeCCEEEEEcCCCCCCCcceEEEEeCC--CCcEEeCCCCC-CccceeeeEEECCEEEEEeceec-CCCCc
Q 011881 167 QMPFCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPI--ANTWNEATSMS-VGRAYCKTGILNDKLYVVGGVSR-ARGGL 242 (475)
Q Consensus 167 p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~--t~~W~~~~~~p-~~R~~~~~~~~~~~iyv~GG~~~-~~~~~ 242 (475)
|.||.++++++++++|||+||.+. +++++||+. +++|+.+++|| .+|.+|++++++++|||+||... .....
T Consensus 7 P~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~ 82 (357)
T 2uvk_A 7 PVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLT 82 (357)
T ss_dssp SSCCCSCEEEEETTEEEEECGGGT----TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCE
T ss_pred CccccceEEEEECCEEEEEeCcCC----CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccc
Confidence 335888888888999999999764 489999998 49999999999 89999999999999999999832 22234
Q ss_pred ccCCeEEEEeCCCCCeEecCCCC-ccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCC----------------
Q 011881 243 TPLQSAEVFDPTTDAWSEVPSMP-FSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWP---------------- 305 (475)
Q Consensus 243 ~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~---------------- 305 (475)
..++++++||+.+++|+++++|+ .+|.. |++++.+++|||+||.+...
T Consensus 83 ~~~~~v~~yd~~~~~W~~~~~~~p~~r~~---------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~ 147 (357)
T 2uvk_A 83 QVFNDVHKYNPKTNSWVKLMSHAPMGMAG---------------HVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDST 147 (357)
T ss_dssp EECCCEEEEETTTTEEEECSCCCSSCCSS---------------EEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHH
T ss_pred eeeccEEEEeCCCCcEEECCCCCCccccc---------------ceEEEECCEEEEEeCcCCCcCcccccchhhcCCccc
Confidence 56889999999999999999998 88887 88888999999999976432
Q ss_pred ------------------ceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCC--CCCeEE
Q 011881 306 ------------------FFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSL--NSAKIK 365 (475)
Q Consensus 306 ------------------~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~--~~~~v~ 365 (475)
.. ...++||+.+++|+.+++ + |.++...+++++++++|||+||.... ..++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~--~~v~~yd~~~~~W~~~~~-~----p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~ 220 (357)
T 2uvk_A 148 AIDKINAHYFDKKAEDYFFN--KFLLSFDPSTQQWSYAGE-S----PWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVF 220 (357)
T ss_dssp HHHHHHHHHHSSCGGGGCCC--CEEEEEETTTTEEEEEEE-C----SSCCCBSCEEEEETTEEEEECCEEETTEECCCEE
T ss_pred chhhhhhhhccccccccCCc--ccEEEEeCCCCcEEECCC-C----CCCCcccccEEEECCEEEEEeeecCCCcccCceE
Confidence 11 234999999999999875 3 22333323378899999999996432 246899
Q ss_pred EEeC--CCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCCCCCCCCccccccCCcccccccc
Q 011881 366 VYDQ--KEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPRDHLGSTSSSSVSLSADSLHEHS 443 (475)
Q Consensus 366 ~yd~--~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 443 (475)
+||+ ++++|+.+.. +| .+..|..|+++.++++|||+||.......- .++ .... ....+......
T Consensus 221 ~~d~d~~~~~W~~~~~-~~---~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~-~g~~--------~~~~~~~~~~~ 286 (357)
T 2uvk_A 221 ELDFTGNNLKWNKLAP-VS---SPDGVAGGFAGISNDSLIFAGGAGFKGSRE-NYQ-NGKN--------YAHEGLKKSYS 286 (357)
T ss_dssp EEECC---CEEEECCC-SS---TTTCCBSCEEEEETTEEEEECCEECTTHHH-HHH-TTCS--------STTTTCCCEEC
T ss_pred EEEecCCCCcEEecCC-CC---CCcccccceEEEECCEEEEEcCccccCCcc-ccc-ccce--------eccccccceee
Confidence 9986 9999999853 32 244566788999999999999965431000 000 0000 00000011123
Q ss_pred cccccccceeeeeeecccCCCc
Q 011881 444 DSLAESDTVVWKAIATRNFGSA 465 (475)
Q Consensus 444 ~~~~d~~~~~W~~~~~~~~~~~ 465 (475)
.+.||+++++|+.++..+.++.
T Consensus 287 ~~~yd~~~~~W~~~~~~p~~r~ 308 (357)
T 2uvk_A 287 TDIHLWHNGKWDKSGELSQGRA 308 (357)
T ss_dssp CEEEECC---CEEEEECSSCCB
T ss_pred EEEEecCCCceeeCCCCCCCcc
Confidence 4578999999999998655544
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=9e-34 Score=303.27 Aligned_cols=251 Identities=11% Similarity=0.094 Sum_probs=199.0
Q ss_pred CccEEEEEEeecCC-ceeeEEecCCCCceeeCC-CCCCCcchhhhcccccccceeeccceeeeeEeeecccCCCCCCCCC
Q 011881 92 TEEWLYILTKVSDD-RLLWHALDPLSKRWQRLP-PLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWLGWNDTLPQMP 169 (475)
Q Consensus 92 ~~~~lyv~gg~~~~-~~~~~~yd~~~~~W~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p 169 (475)
.++.||++||.... ..++++||+.+++|..++ ++|.. ..|.|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~------------------------------------~~p~~ 439 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSS------------------------------------EVPVA 439 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCS------------------------------------CCCCC
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCC------------------------------------CCCcc
Confidence 57899999997642 237899999999999988 65421 13457
Q ss_pred ccceeEEEe--CCEEEEEcCCCCCC-CcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccC
Q 011881 170 FCGCAIGAV--DGCLYVLGGFSRTS-AMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPL 245 (475)
Q Consensus 170 r~~~~~~~~--~~~lyv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~ 245 (475)
|..|+++++ +++|||+||.+... .++++++||+.+++|+.+++||.+|.+|+++++ +++|||+||.+.. .
T Consensus 440 R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~----~-- 513 (695)
T 2zwa_A 440 RMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEG----P-- 513 (695)
T ss_dssp CBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSS----C--
T ss_pred ccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCC----C--
Confidence 999999999 99999999987644 689999999999999999999999999999997 9999999998521 1
Q ss_pred CeEEEEeCCCCCeEecCC---CCccccCCCCccccccccccceeeEEEeC---CEEEEeccCCCC--CceeccceEEEeC
Q 011881 246 QSAEVFDPTTDAWSEVPS---MPFSRAQGLPNAFFADMLKPIATGMTSYM---GRLCVPQSLYSW--PFFVDVGGEIYDP 317 (475)
Q Consensus 246 ~~~~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~iyv~GG~~~~--~~~~~~~~~~yd~ 317 (475)
++++||+.+++|+.+++ +|.+|.. |++++++ ++|||+||.... .... ..++||+
T Consensus 514 -~v~~yd~~t~~W~~~~~~g~~p~~r~~---------------~~a~v~~~~~~~iyv~GG~~~~~~~~~~--~v~~yd~ 575 (695)
T 2zwa_A 514 -AMLLYNVTEEIFKDVTPKDEFFQNSLV---------------SAGLEFDPVSKQGIILGGGFMDQTTVSD--KAIIFKY 575 (695)
T ss_dssp -SEEEEETTTTEEEECCCSSGGGGSCCB---------------SCEEEEETTTTEEEEECCBCTTSSCBCC--EEEEEEE
T ss_pred -CEEEEECCCCceEEccCCCCCCCcccc---------------eeEEEEeCCCCEEEEECCcCCCCCeeeC--cEEEEEc
Confidence 89999999999999987 8889988 7777766 899999998543 2233 3499999
Q ss_pred CCCc------eEEcCCCCCCCCCCccCCCeEEEEEC-CeEEEEcCCCCC----CCCeEEEEeCCCCcEEEcCCcCcccc-
Q 011881 318 DTNS------WVEMPIGMGEGWPARQAGTKLSVVLD-GELYAFDPSSSL----NSAKIKVYDQKEDTWKVVIGKVPIRD- 385 (475)
Q Consensus 318 ~~~~------W~~~~~~~~~~~p~~~~~~~~~~~~~-~~lyv~GG~~~~----~~~~v~~yd~~~~~W~~v~~~~p~~~- 385 (475)
.+++ |+.+.. ++ +.++.+++ +++++ ++|||+||.+.. ..+++++||+++++|+.+. +|...
T Consensus 576 ~~~~w~~~~~W~~~~~-~p---~~~R~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~--~p~~~~ 648 (695)
T 2zwa_A 576 DAENATEPITVIKKLQ-HP---LFQRYGSQ-IKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP--ISRRIW 648 (695)
T ss_dssp CTTCSSCCEEEEEEEE-CG---GGCCBSCE-EEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECC--CCHHHH
T ss_pred cCCccccceEEEEcCC-CC---CCCcccce-EEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEee--cccccc
Confidence 9999 888865 21 34566665 56777 999999997533 3579999999999999653 33211
Q ss_pred --CCCCCCCeEEEEeCC-eEEEEeecC
Q 011881 386 --FADSESPYLLSAFHG-KLHVLTKDA 409 (475)
Q Consensus 386 --~~~~r~~~~~~~~~~-~l~v~GG~~ 409 (475)
.+..+.+|+++.+++ +|||+||..
T Consensus 649 ~~~~p~~~gh~~~~~~~g~i~v~GGg~ 675 (695)
T 2zwa_A 649 EDHSLMLAGFSLVSTSMGTIHIIGGGA 675 (695)
T ss_dssp HHSCCCCSSCEEECC---CEEEECCEE
T ss_pred CCCCccceeeeEEEeCCCEEEEEeCCc
Confidence 123567788887776 999999964
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=5.5e-32 Score=289.45 Aligned_cols=235 Identities=12% Similarity=0.133 Sum_probs=188.2
Q ss_pred CCCccceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCC-C-----CCCccceeeeEEE--CCEEEEEeceecC
Q 011881 167 QMPFCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEAT-S-----MSVGRAYCKTGIL--NDKLYVVGGVSRA 238 (475)
Q Consensus 167 p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~-~-----~p~~R~~~~~~~~--~~~iyv~GG~~~~ 238 (475)
|.+|.++ ++++++.||++||.+. ...+++++||+.+++|+.++ + ||.+|.+|+++++ +++|||+||.+..
T Consensus 386 p~rr~g~-~~~~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~ 463 (695)
T 2zwa_A 386 INRKFGD-VDVAGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAP 463 (695)
T ss_dssp TCCBSCE-EEECSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSST
T ss_pred CCCceeE-EEEECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCC
Confidence 3345554 4458999999999877 77899999999999999998 5 8999999999999 9999999998532
Q ss_pred CCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEe-CCEEEEeccCCCCCceeccceEEEeC
Q 011881 239 RGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY-MGRLCVPQSLYSWPFFVDVGGEIYDP 317 (475)
Q Consensus 239 ~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~ 317 (475)
...++++++||+.+++|+.+++||.+|.. |+++++ +++|||+||.+... ..++||+
T Consensus 464 ---~~~~~dv~~yd~~t~~W~~~~~~p~~R~~---------------h~~~~~~~~~iyv~GG~~~~~-----~v~~yd~ 520 (695)
T 2zwa_A 464 ---HQGLSDNWIFDMKTREWSMIKSLSHTRFR---------------HSACSLPDGNVLILGGVTEGP-----AMLLYNV 520 (695)
T ss_dssp ---TCBCCCCEEEETTTTEEEECCCCSBCCBS---------------CEEEECTTSCEEEECCBCSSC-----SEEEEET
T ss_pred ---CCccccEEEEeCCCCcEEECCCCCCCccc---------------ceEEEEcCCEEEEECCCCCCC-----CEEEEEC
Confidence 22578999999999999999999999999 888886 99999999987654 3499999
Q ss_pred CCCceEEcCCCCCCCCCCccCCCeEEEEEC---CeEEEEcCCCC---CCCCeEEEEeCCCCc------EEEcCCcCcccc
Q 011881 318 DTNSWVEMPIGMGEGWPARQAGTKLSVVLD---GELYAFDPSSS---LNSAKIKVYDQKEDT------WKVVIGKVPIRD 385 (475)
Q Consensus 318 ~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~---~~lyv~GG~~~---~~~~~v~~yd~~~~~------W~~v~~~~p~~~ 385 (475)
.+++|+.++.. . ..|.++.+++ +++++ ++|||+||... ...+++++||+.+++ |+.+.. +|
T Consensus 521 ~t~~W~~~~~~-g-~~p~~r~~~~-a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~-~p--- 593 (695)
T 2zwa_A 521 TEEIFKDVTPK-D-EFFQNSLVSA-GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ-HP--- 593 (695)
T ss_dssp TTTEEEECCCS-S-GGGGSCCBSC-EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE-CG---
T ss_pred CCCceEEccCC-C-CCCCccccee-EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC-CC---
Confidence 99999998862 1 1356667666 45555 89999999743 235799999999999 888753 22
Q ss_pred CCCCCCCeEEEEeC-CeEEEEeecCCCCeeEEEecCCCCCCCCccccccCCcccccccccccccccceeeeeee
Q 011881 386 FADSESPYLLSAFH-GKLHVLTKDASRNISILRADPRDHLGSTSSSSVSLSADSLHEHSDSLAESDTVVWKAIA 458 (475)
Q Consensus 386 ~~~~r~~~~~~~~~-~~l~v~GG~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 458 (475)
+.+|..|++++++ ++|||+||....... ......+.||+.+++|+.+.
T Consensus 594 -~~~R~~~~~~~~~~~~iyv~GG~~~~~~~------------------------~~~~~v~~yd~~t~~W~~~~ 642 (695)
T 2zwa_A 594 -LFQRYGSQIKYITPRKLLIVGGTSPSGLF------------------------DRTNSIISLDPLSETLTSIP 642 (695)
T ss_dssp -GGCCBSCEEEEEETTEEEEECCBCSSCCC------------------------CTTTSEEEEETTTTEEEECC
T ss_pred -CCCcccceEEEeCCCEEEEECCccCCCCC------------------------CCCCeEEEEECCCCeEEEee
Confidence 4678899999999 999999997654300 01123457899999999764
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=100.00 E-value=1.7e-32 Score=292.70 Aligned_cols=302 Identities=15% Similarity=0.186 Sum_probs=210.8
Q ss_pred hhhhhhhcCChhhHHhhhccCCC--ccEEEEEEeecCC--------ceeeEEecCCCCceeeCCCCCCCcchhhhccccc
Q 011881 70 SRKWKATVTSPELFEVRKELGTT--EEWLYILTKVSDD--------RLLWHALDPLSKRWQRLPPLPNVVDEEESRKSSS 139 (475)
Q Consensus 70 ck~W~~l~~s~~~~~~r~~~~~~--~~~lyv~gg~~~~--------~~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~ 139 (475)
..+|..+...|. ..+..... ++.||++||.... ...+++||+.+++|..++.++.+
T Consensus 175 ~~~W~~~~~~P~---~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~----------- 240 (656)
T 1k3i_A 175 LGRWGPTIDLPI---VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK----------- 240 (656)
T ss_dssp SCEEEEEEECSS---CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS-----------
T ss_pred CCeeeeeccCCC---CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC-----------
Confidence 468888755444 22222222 7899999997532 12689999999999998877653
Q ss_pred ccceeeccceeeeeEeeecccCCCCCCCCCccce--eE-EEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCc
Q 011881 140 GLWNMVGSGIKIAEVVRGWLGWNDTLPQMPFCGC--AI-GAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVG 216 (475)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~pr~~~--~~-~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~ 216 (475)
|..+ ++ +..+++||++||.+.. ++++||+.+++|+.+++|+.+
T Consensus 241 ------------------------------~~~~~~~~~~~~~g~lyv~GG~~~~----~v~~yd~~t~~W~~~~~~~~~ 286 (656)
T 1k3i_A 241 ------------------------------HDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVA 286 (656)
T ss_dssp ------------------------------CCCSSCEEEECTTSCEEEECSSSTT----CEEEEEGGGTEEEECCCCSSC
T ss_pred ------------------------------CCCccccccCCCCCCEEEeCCCCCC----ceEEecCcCCceeECCCCCcc
Confidence 3222 23 3468999999997653 799999999999999999999
Q ss_pred cceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecC-----CCCccccCCCCccccccccccceeeEEE
Q 011881 217 RAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVP-----SMPFSRAQGLPNAFFADMLKPIATGMTS 290 (475)
Q Consensus 217 R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~-----~~p~~r~~~~~~~~~~~~~~~~~~~~~~ 290 (475)
|.+|+++++ +++|||+||.. ++...++++++||+.+++|+.++ +|+..+. ++++.
T Consensus 287 R~~~s~~~~~dg~iyv~GG~~---~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~----------------~~~~~ 347 (656)
T 1k3i_A 287 RGYQSSATMSDGRVFTIGGSW---SGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK----------------QGLYR 347 (656)
T ss_dssp CSSCEEEECTTSCEEEECCCC---CSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT----------------TGGGT
T ss_pred ccccceEEecCCeEEEEeCcc---cCCcccccceEeCCCCCcceeCCCccccccccccc----------------cceee
Confidence 999999999 99999999953 22235789999999999999984 3443332 34456
Q ss_pred eCCEEEEeccCCCCCce--eccceEEEeCCCCceEEcCCCCCCC---CCCccCCCeEEEE---ECCeEEEEcCCCCC---
Q 011881 291 YMGRLCVPQSLYSWPFF--VDVGGEIYDPDTNSWVEMPIGMGEG---WPARQAGTKLSVV---LDGELYAFDPSSSL--- 359 (475)
Q Consensus 291 ~~~~iyv~GG~~~~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~---~p~~~~~~~~~~~---~~~~lyv~GG~~~~--- 359 (475)
.++++|++||.++.... .....+.||+++++|.......... .|.+..+ + ++. .+++|||+||....
T Consensus 348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~-~-av~~~~~~~~i~v~GG~~~~~~~ 425 (656)
T 1k3i_A 348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG-N-AVMYDAVKGKILTFGGSPDYQDS 425 (656)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC-E-EEEEETTTTEEEEECCBSSSSSS
T ss_pred cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC-c-eEeccCCCCeEEEEeCCCCCCCC
Confidence 78999999997654211 0123489999999997643211100 0112222 2 332 58999999996421
Q ss_pred -CCC---eEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEe-CCeEEEEeecCCCCeeEEEecCCCCCCCCccccccC
Q 011881 360 -NSA---KIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAF-HGKLHVLTKDASRNISILRADPRDHLGSTSSSSVSL 434 (475)
Q Consensus 360 -~~~---~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~GG~~~~~~~v~~~d~~~~~~~~~~~~~~~ 434 (475)
..+ .+++||+++++|.++.. ..++.+|..|+++++ +|+|||+||...... ++
T Consensus 426 ~~~~~~~~v~~yd~~~~~W~~~~~----~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~----~~--------------- 482 (656)
T 1k3i_A 426 DATTNAHIITLGEPGTSPNTVFAS----NGLYFARTFHTSVVLPDGSTFITGGQRRGIP----FE--------------- 482 (656)
T ss_dssp BCCCCEEEEECCSTTSCCEEEECT----TCCSSCCBSCEEEECTTSCEEEECCBSBCCT----TC---------------
T ss_pred CcCCcceEEEcCCCCCCCeeEEcc----CCCCCCcccCCeEECCCCCEEEECCcccCcC----cC---------------
Confidence 123 79999999999998751 136778888998887 999999999653310 00
Q ss_pred CcccccccccccccccceeeeeeecccCCCc
Q 011881 435 SADSLHEHSDSLAESDTVVWKAIATRNFGSA 465 (475)
Q Consensus 435 ~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~ 465 (475)
+.......+.|||++++|+.+++...++.
T Consensus 483 --~~~~~~~v~~ydp~t~~W~~~~~~~~~R~ 511 (656)
T 1k3i_A 483 --DSTPVFTPEIYVPEQDTFYKQNPNSIVRV 511 (656)
T ss_dssp --CCSBCCCCEEEEGGGTEEEECCCCSSCCC
T ss_pred --CCCcccceEEEcCCCCceeecCCCCCccc
Confidence 00111223478999999999998654444
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.96 E-value=5e-30 Score=273.68 Aligned_cols=269 Identities=12% Similarity=0.067 Sum_probs=195.4
Q ss_pred HhhhhhhhhcCChhhHHhhhccC-----CCccEEEEEEeecCCceeeEEecCCCCceeeCCCCCCCcchhhhcccccccc
Q 011881 68 AVSRKWKATVTSPELFEVRKELG-----TTEEWLYILTKVSDDRLLWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLW 142 (475)
Q Consensus 68 ~vck~W~~l~~s~~~~~~r~~~~-----~~~~~lyv~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~~~~~~~~~ 142 (475)
...++|+.+. .++..|..+. ..++.||++||.... .+++||+.+++|..+++|+.+
T Consensus 226 ~~t~~w~~~~---~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~--~v~~yd~~t~~W~~~~~~~~~-------------- 286 (656)
T 1k3i_A 226 PSTGIVSDRT---VTVTKHDMFCPGISMDGNGQIVVTGGNDAK--KTSLYDSSSDSWIPGPDMQVA-------------- 286 (656)
T ss_dssp TTTCCBCCCE---EEECSCCCSSCEEEECTTSCEEEECSSSTT--CEEEEEGGGTEEEECCCCSSC--------------
T ss_pred CCCCcEEeCc---ccCCCCCCccccccCCCCCCEEEeCCCCCC--ceEEecCcCCceeECCCCCcc--------------
Confidence 3456787763 2333333222 257899999997654 689999999999999888764
Q ss_pred eeeccceeeeeEeeecccCCCCCCCCCccceeEEEe-CCEEEEEcC-CCCCCCcceEEEEeCCCCcEEeC-----CCCCC
Q 011881 143 NMVGSGIKIAEVVRGWLGWNDTLPQMPFCGCAIGAV-DGCLYVLGG-FSRTSAMRCVRRYDPIANTWNEA-----TSMSV 215 (475)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~p~pr~~~~~~~~-~~~lyv~GG-~~~~~~~~~~~~yd~~t~~W~~~-----~~~p~ 215 (475)
|..|+++++ +++||++|| .++....+++++||+.+++|+.+ ++|+.
T Consensus 287 ---------------------------R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~ 339 (656)
T 1k3i_A 287 ---------------------------RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT 339 (656)
T ss_dssp ---------------------------CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCC
T ss_pred ---------------------------ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccc
Confidence 888999988 999999999 45556788999999999999997 45666
Q ss_pred ccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCC-CCc------cccCCCCccccccccccceeeE
Q 011881 216 GRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPS-MPF------SRAQGLPNAFFADMLKPIATGM 288 (475)
Q Consensus 216 ~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~-~p~------~r~~~~~~~~~~~~~~~~~~~~ 288 (475)
+|.. +++..++++|++||.+.........++++.||+.++.|..... .+. ++.. +++
T Consensus 340 ~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~---------------~~a 403 (656)
T 1k3i_A 340 ADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC---------------GNA 403 (656)
T ss_dssp CCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT---------------CEE
T ss_pred cccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCC---------------Cce
Confidence 6653 5556799999999974321111246799999999999875322 111 1112 333
Q ss_pred E---EeCCEEEEeccCCCC---Cceecc-ceEEEeCCCCceEEcC-CCCCCCCCCccCCCeEEEEE-CCeEEEEcCCCC-
Q 011881 289 T---SYMGRLCVPQSLYSW---PFFVDV-GGEIYDPDTNSWVEMP-IGMGEGWPARQAGTKLSVVL-DGELYAFDPSSS- 358 (475)
Q Consensus 289 ~---~~~~~iyv~GG~~~~---~~~~~~-~~~~yd~~~~~W~~~~-~~~~~~~p~~~~~~~~~~~~-~~~lyv~GG~~~- 358 (475)
+ ..+++|||+||.... ....+. ..++||+.+++|+++. ..| |.+|..+. ++++ +|+|||+||.+.
T Consensus 404 v~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~m----p~~R~~~~-~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 404 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL----YFARTFHT-SVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC----SSCCBSCE-EEECTTSCEEEECCBSBC
T ss_pred EeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCC----CCCcccCC-eEECCCCCEEEECCcccC
Confidence 3 258999999996432 112111 2489999999999886 224 45666665 4555 999999999642
Q ss_pred ------CCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEe--CCeEEEEeecC
Q 011881 359 ------LNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAF--HGKLHVLTKDA 409 (475)
Q Consensus 359 ------~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~--~~~l~v~GG~~ 409 (475)
....++++||+++++|+.+. .++.+|..|+++++ +|+|||+||..
T Consensus 479 ~~~~~~~~~~~v~~ydp~t~~W~~~~------~~~~~R~~hs~a~ll~dg~v~v~GG~~ 531 (656)
T 1k3i_A 479 IPFEDSTPVFTPEIYVPEQDTFYKQN------PNSIVRVYHSISLLLPDGRVFNGGGGL 531 (656)
T ss_dssp CTTCCCSBCCCCEEEEGGGTEEEECC------CCSSCCCTTEEEEECTTSCEEEEECCC
T ss_pred cCcCCCCcccceEEEcCCCCceeecC------CCCCccccccHhhcCCCcEEEecCCCC
Confidence 12468999999999999975 35678999988887 99999999964
No 19
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.70 E-value=3e-06 Score=85.05 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=39.4
Q ss_pred CCCCCCCHHHHHHHhccCChhhhHHHHHhhhhhhhhcCChhhHH
Q 011881 41 RLIPSLPDELSIQILARVPRIFYLNLRAVSRKWKATVTSPELFE 84 (475)
Q Consensus 41 ~~~~~LP~dl~~~iL~~lp~~~l~~l~~vck~W~~l~~s~~~~~ 84 (475)
..+..||+|++..||++|+..+|.++..|||+|+.++.++.+-+
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~ 60 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWR 60 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHH
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhh
Confidence 45778999999999999999999999999999999998876644
No 20
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.64 E-value=2.2e-06 Score=85.84 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=36.4
Q ss_pred CCCCCCHH----HHHHHhccCChhhhHHHHHhhhhhhhhcCChhh
Q 011881 42 LIPSLPDE----LSIQILARVPRIFYLNLRAVSRKWKATVTSPEL 82 (475)
Q Consensus 42 ~~~~LP~d----l~~~iL~~lp~~~l~~l~~vck~W~~l~~s~~~ 82 (475)
.+..||+| |+..||++|+..+|.++..|||+|+.++.++.+
T Consensus 10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~ 54 (435)
T 1p22_A 10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGML 54 (435)
T ss_dssp HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTH
T ss_pred hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHH
Confidence 44579999 999999999999999999999999998876654
No 21
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.59 E-value=1.2e-05 Score=80.74 Aligned_cols=41 Identities=32% Similarity=0.462 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHhccCChhhhHHHHHhhhhhhhhcCC-hhh
Q 011881 42 LIPSLPDELSIQILARVPRIFYLNLRAVSRKWKATVTS-PEL 82 (475)
Q Consensus 42 ~~~~LP~dl~~~iL~~lp~~~l~~l~~vck~W~~l~~s-~~~ 82 (475)
.+..||+|++.+||++|+..+|.++..|||+|+.++.+ +.+
T Consensus 14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~ 55 (464)
T 3v7d_B 14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 55 (464)
T ss_dssp HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHH
T ss_pred ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45679999999999999999999999999999999987 543
No 22
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.48 E-value=9.6e-08 Score=65.38 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=38.4
Q ss_pred CCCCCCCCHHHHHHHhccCChhhhHHHHHhhhhhhhhcCChhhH
Q 011881 40 LRLIPSLPDELSIQILARVPRIFYLNLRAVSRKWKATVTSPELF 83 (475)
Q Consensus 40 ~~~~~~LP~dl~~~iL~~lp~~~l~~l~~vck~W~~l~~s~~~~ 83 (475)
+..|..||+|++.+||++||..++.+++.|||+|+.++.++.+-
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW 49 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 49 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHH
Confidence 35678999999999999999999999999999999999887763
No 23
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.45 E-value=6.8e-08 Score=90.36 Aligned_cols=51 Identities=24% Similarity=0.501 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCHHHHHHHhccCChhhhH-HHHHhhhhhhhhcCChhhHHhhh
Q 011881 37 EDGLRLIPSLPDELSIQILARVPRIFYL-NLRAVSRKWKATVTSPELFEVRK 87 (475)
Q Consensus 37 ~~~~~~~~~LP~dl~~~iL~~lp~~~l~-~l~~vck~W~~l~~s~~~~~~r~ 87 (475)
.+....+..||+||+++||++||..+|. ++++|||+|+.|+.++.|-+.+.
T Consensus 45 ~~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~ 96 (297)
T 2e31_A 45 AEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKC 96 (297)
T ss_dssp --CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHH
T ss_pred cccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHh
Confidence 3445678899999999999999999999 99999999999999999866543
No 24
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.01 E-value=0.0016 Score=59.17 Aligned_cols=194 Identities=18% Similarity=0.077 Sum_probs=119.6
Q ss_pred ceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEE
Q 011881 172 GCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVF 251 (475)
Q Consensus 172 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~y 251 (475)
-.++...++.||+-.|..+ .+.+.++|+.+++=..--+++..-.+.+++..+++||+.... .+.+++|
T Consensus 23 tqGL~~~~~~LyestG~~g---~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~---------~~~v~v~ 90 (243)
T 3mbr_X 23 TEGLFYLRGHLYESTGETG---RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR---------NHEGFVY 90 (243)
T ss_dssp EEEEEEETTEEEEEECCTT---SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS---------SSEEEEE
T ss_pred cccEEEECCEEEEECCCCC---CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee---------CCEEEEE
Confidence 3467778999999988654 358899999999876655666655667788889999998653 4789999
Q ss_pred eCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEE-cCCCCC
Q 011881 252 DPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE-MPIGMG 330 (475)
Q Consensus 252 d~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~ 330 (475)
|+.|.+-. ..++.+..+ .+++.-+++||+.-|.. ....+|+++.+-.. +....
T Consensus 91 D~~tl~~~--~ti~~~~~G---------------wglt~dg~~L~vSdgs~--------~l~~iDp~t~~~~~~I~V~~- 144 (243)
T 3mbr_X 91 DLATLTPR--ARFRYPGEG---------------WALTSDDSHLYMSDGTA--------VIRKLDPDTLQQVGSIKVTA- 144 (243)
T ss_dssp ETTTTEEE--EEEECSSCC---------------CEEEECSSCEEEECSSS--------EEEEECTTTCCEEEEEECEE-
T ss_pred ECCcCcEE--EEEeCCCCc---------------eEEeeCCCEEEEECCCC--------eEEEEeCCCCeEEEEEEEcc-
Confidence 99886533 233333333 45666677899865521 23789999876532 32211
Q ss_pred CCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc---EEEcCCcCcccc---CCCCCCCeEEEE--eCCeE
Q 011881 331 EGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT---WKVVIGKVPIRD---FADSESPYLLSA--FHGKL 402 (475)
Q Consensus 331 ~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~---W~~v~~~~p~~~---~~~~r~~~~~~~--~~~~l 402 (475)
. +.+....--+...+|+||+--- ..+.|.+-|+++.+ |..+.+..|... .+.....-+++. -++++
T Consensus 145 ~--g~~~~~lNeLe~~~G~lyanvw----~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l 218 (243)
T 3mbr_X 145 G--GRPLDNLNELEWVNGELLANVW----LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL 218 (243)
T ss_dssp T--TEECCCEEEEEEETTEEEEEET----TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred C--CcccccceeeEEeCCEEEEEEC----CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence 1 1111111113456999996542 34799999999986 555443222110 011112223443 26788
Q ss_pred EEEeecC
Q 011881 403 HVLTKDA 409 (475)
Q Consensus 403 ~v~GG~~ 409 (475)
||.|..=
T Consensus 219 fVTGK~w 225 (243)
T 3mbr_X 219 FVTGKRW 225 (243)
T ss_dssp EEEETTC
T ss_pred EEECCCC
Confidence 8877543
No 25
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.81 E-value=0.0035 Score=57.45 Aligned_cols=192 Identities=14% Similarity=0.021 Sum_probs=114.3
Q ss_pred eeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEe
Q 011881 173 CAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFD 252 (475)
Q Consensus 173 ~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd 252 (475)
.++...++.||+..|..+ .+.+.++|+.|.+=..--+++..-.+.+++..+++||+.... .+.+.+||
T Consensus 46 qGL~~~~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~---------~~~v~v~D 113 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNG---RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK---------NGLGFVWN 113 (262)
T ss_dssp EEEEEETTEEEEEEEETT---EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS---------SSEEEEEE
T ss_pred ceEEEECCEEEEECCCCC---CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee---------CCEEEEEE
Confidence 455666899999988644 358899999999865544555444556678889999999653 37899999
Q ss_pred CCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEE-cCCCCCC
Q 011881 253 PTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE-MPIGMGE 331 (475)
Q Consensus 253 ~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~ 331 (475)
+++.+-. ..++.+..+ .+++.-++.+|+.-|. .....+|+++.+-.. ++... .
T Consensus 114 ~~t~~~~--~ti~~~~eG---------------~glt~dg~~L~~SdGs--------~~i~~iDp~T~~v~~~I~V~~-~ 167 (262)
T 3nol_A 114 IRNLRQV--RSFNYDGEG---------------WGLTHNDQYLIMSDGT--------PVLRFLDPESLTPVRTITVTA-H 167 (262)
T ss_dssp TTTCCEE--EEEECSSCC---------------CCEEECSSCEEECCSS--------SEEEEECTTTCSEEEEEECEE-T
T ss_pred CccCcEE--EEEECCCCc---------------eEEecCCCEEEEECCC--------CeEEEEcCCCCeEEEEEEecc-C
Confidence 9987633 222222233 4555566778886542 123789999876433 33210 1
Q ss_pred CCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc---EEEcCCcCccc--cCCCCCCCeEEEEe--CCeEEE
Q 011881 332 GWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT---WKVVIGKVPIR--DFADSESPYLLSAF--HGKLHV 404 (475)
Q Consensus 332 ~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~---W~~v~~~~p~~--~~~~~r~~~~~~~~--~~~l~v 404 (475)
+++....--+...+|+||+--- ..+.|.+-|+++.+ |..+.+..|.. ..+.....-+++.. ++++||
T Consensus 168 --g~~~~~lNELe~~~G~lyan~w----~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfV 241 (262)
T 3nol_A 168 --GEELPELNELEWVDGEIFANVW----QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFV 241 (262)
T ss_dssp --TEECCCEEEEEEETTEEEEEET----TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEE
T ss_pred --CccccccceeEEECCEEEEEEc----cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEE
Confidence 1111111113445899997432 34799999999986 44443322211 01111122344433 577887
Q ss_pred Eeec
Q 011881 405 LTKD 408 (475)
Q Consensus 405 ~GG~ 408 (475)
.|..
T Consensus 242 TGK~ 245 (262)
T 3nol_A 242 TGKL 245 (262)
T ss_dssp EETT
T ss_pred ECCC
Confidence 7754
No 26
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.59 E-value=0.042 Score=53.07 Aligned_cols=188 Identities=12% Similarity=0.081 Sum_probs=103.0
Q ss_pred EEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCC--ccceeeeEEECCEEEEEeceecCCCCcccCCeEEEE
Q 011881 176 GAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSV--GRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVF 251 (475)
Q Consensus 176 ~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~y 251 (475)
++.++.||+... ...++.||+.+.+ |+.-...+. .+.....+..++.||+... ...+..|
T Consensus 140 ~~~~~~v~v~~~------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~----------~g~l~~~ 203 (376)
T 3q7m_A 140 VVSDGLVLIHTS------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGD----------NGRVSAV 203 (376)
T ss_dssp EEETTEEEEECT------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCT----------TTEEEEE
T ss_pred EEECCEEEEEcC------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcC----------CCEEEEE
Confidence 456888887543 2479999998876 876432221 1223345556888877321 2478999
Q ss_pred eCCCCC--eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCc--eEEcCC
Q 011881 252 DPTTDA--WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNS--WVEMPI 327 (475)
Q Consensus 252 d~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~ 327 (475)
|+.+++ |+.-...+...... +.+..+....+..++.+|+.+. + -...++|+++++ |+.-..
T Consensus 204 d~~tG~~~w~~~~~~~~~~~~~-------~~~~~~~~~p~~~~~~v~~~~~-~-------g~l~~~d~~tG~~~w~~~~~ 268 (376)
T 3q7m_A 204 LMEQGQMIWQQRISQATGSTEI-------DRLSDVDTTPVVVNGVVFALAY-N-------GNLTALDLRSGQIMWKRELG 268 (376)
T ss_dssp ETTTCCEEEEEECCC------------------CCCCCCEEETTEEEEECT-T-------SCEEEEETTTCCEEEEECCC
T ss_pred ECCCCcEEEEEecccCCCCccc-------ccccccCCCcEEECCEEEEEec-C-------cEEEEEECCCCcEEeeccCC
Confidence 998765 87643322111000 0000000233456888888542 1 123789998774 775321
Q ss_pred CCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc--EEEcCCcCccccCCCCCCCeEEEEeCCeEEEE
Q 011881 328 GMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT--WKVVIGKVPIRDFADSESPYLLSAFHGKLHVL 405 (475)
Q Consensus 328 ~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~--W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~ 405 (475)
. ....++.++.||+... ...++.||+++.+ |+.-. .+ .+.....+..+++||+.
T Consensus 269 --------~---~~~~~~~~~~l~~~~~-----~g~l~~~d~~tG~~~w~~~~--~~------~~~~~~~~~~~~~l~v~ 324 (376)
T 3q7m_A 269 --------S---VNDFIVDGNRIYLVDQ-----NDRVMALTIDGGVTLWTQSD--LL------HRLLTSPVLYNGNLVVG 324 (376)
T ss_dssp --------C---EEEEEEETTEEEEEET-----TCCEEEEETTTCCEEEEECT--TT------TSCCCCCEEETTEEEEE
T ss_pred --------C---CCCceEECCEEEEEcC-----CCeEEEEECCCCcEEEeecc--cC------CCcccCCEEECCEEEEE
Confidence 0 1125667899999863 2479999998765 77521 11 11122345568888875
Q ss_pred eecCCCCeeEEEecCCC
Q 011881 406 TKDASRNISILRADPRD 422 (475)
Q Consensus 406 GG~~~~~~~v~~~d~~~ 422 (475)
... -.+.++|+.+
T Consensus 325 ~~~----g~l~~~d~~t 337 (376)
T 3q7m_A 325 DSE----GYLHWINVED 337 (376)
T ss_dssp CTT----SEEEEEETTT
T ss_pred eCC----CeEEEEECCC
Confidence 421 1355666543
No 27
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.58 E-value=0.0038 Score=57.33 Aligned_cols=154 Identities=12% Similarity=0.014 Sum_probs=97.9
Q ss_pred eeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEe
Q 011881 173 CAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFD 252 (475)
Q Consensus 173 ~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd 252 (475)
.++...++.||+..|..+ .+.++|+.|.+=..-- ++..-.+.+++..+++||+.... .+.+.+||
T Consensus 58 qGL~~~~~~Ly~stG~~g-----~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~---------~~~v~V~D 122 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQG-----TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT---------EGLLFTWS 122 (268)
T ss_dssp EEEEEETTEEEEEETTTT-----EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS---------SCEEEEEE
T ss_pred ceEEEECCEEEEEcCCCC-----EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc---------CCEEEEEE
Confidence 566677999999988654 3889999998754322 44433455677789999998653 37899999
Q ss_pred CCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEE-cCCCCCC
Q 011881 253 PTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE-MPIGMGE 331 (475)
Q Consensus 253 ~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~ 331 (475)
+++.+-. ..++.+..+ .+++.-+++||+.-|.+ ....+|+++.+-.. +.... .
T Consensus 123 ~~Tl~~~--~ti~~~~eG---------------wGLt~Dg~~L~vSdGs~--------~l~~iDp~T~~v~~~I~V~~-~ 176 (268)
T 3nok_A 123 GMPPQRE--RTTRYSGEG---------------WGLCYWNGKLVRSDGGT--------MLTFHEPDGFALVGAVQVKL-R 176 (268)
T ss_dssp TTTTEEE--EEEECSSCC---------------CCEEEETTEEEEECSSS--------EEEEECTTTCCEEEEEECEE-T
T ss_pred CCcCcEE--EEEeCCCce---------------eEEecCCCEEEEECCCC--------EEEEEcCCCCeEEEEEEeCC-C
Confidence 9986533 222222233 45666778899976521 23789999876543 32211 1
Q ss_pred CCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 332 GWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 332 ~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
+.+....--....+|+||+--- ..+.|.+-|+++.+
T Consensus 177 --g~~v~~lNeLe~~dG~lyanvw----~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 177 --GQPVELINELECANGVIYANIW----HSSDVLEIDPATGT 212 (268)
T ss_dssp --TEECCCEEEEEEETTEEEEEET----TCSEEEEECTTTCB
T ss_pred --CcccccccccEEeCCEEEEEEC----CCCeEEEEeCCCCc
Confidence 1111111113455899996431 34799999999986
No 28
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.57 E-value=0.021 Score=54.34 Aligned_cols=194 Identities=13% Similarity=0.024 Sum_probs=112.0
Q ss_pred ceeEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcE-EeCCCCCCccceeeeEE-ECCEEEEEeceecCCCCcccCCeEE
Q 011881 172 GCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTW-NEATSMSVGRAYCKTGI-LNDKLYVVGGVSRARGGLTPLQSAE 249 (475)
Q Consensus 172 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~ 249 (475)
...++..++++|+.... .+.+.++|+.+.+- ..++....| ..++. -++++||.... ...+.
T Consensus 46 ~~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~~~~~p---~~i~~~~~g~lyv~~~~---------~~~v~ 108 (328)
T 3dsm_A 46 AQSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRITGFTSP---RYIHFLSDEKAYVTQIW---------DYRIF 108 (328)
T ss_dssp EEEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEECCSSE---EEEEEEETTEEEEEEBS---------CSEEE
T ss_pred ceEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcCCCCCC---cEEEEeCCCeEEEEECC---------CCeEE
Confidence 34566789999998642 35899999998876 334433333 23444 67899998742 26899
Q ss_pred EEeCCCCCeEecCCCCcc--ccCCCCccccccccccceeeEEEeCCEEEEecc-CCCCCceeccceEEEeCCCCceEE-c
Q 011881 250 VFDPTTDAWSEVPSMPFS--RAQGLPNAFFADMLKPIATGMTSYMGRLCVPQS-LYSWPFFVDVGGEIYDPDTNSWVE-M 325 (475)
Q Consensus 250 ~yd~~t~~W~~~~~~p~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG-~~~~~~~~~~~~~~yd~~~~~W~~-~ 325 (475)
++|+.+.+-...-+.... +.. .+ ..++..++++||..- .. ....++|+++++... +
T Consensus 109 ~iD~~t~~~~~~i~~g~~~~~~~-~p------------~~i~~~~~~lyv~~~~~~-------~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 109 IINPKTYEITGYIECPDMDMESG-ST------------EQMVQYGKYVYVNCWSYQ-------NRILKIDTETDKVVDEL 168 (328)
T ss_dssp EEETTTTEEEEEEECTTCCTTTC-BC------------CCEEEETTEEEEEECTTC-------CEEEEEETTTTEEEEEE
T ss_pred EEECCCCeEEEEEEcCCccccCC-Cc------------ceEEEECCEEEEEcCCCC-------CEEEEEECCCCeEEEEE
Confidence 999999874421111110 000 00 344557899999742 11 234899999988654 2
Q ss_pred CCCCCCCCCCccCCCeEEEEECCeEEEEcCCCC--C----CCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEe-
Q 011881 326 PIGMGEGWPARQAGTKLSVVLDGELYAFDPSSS--L----NSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAF- 398 (475)
Q Consensus 326 ~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~--~----~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~- 398 (475)
+. .. .+. + .+..-+|++|+...... . ..+.++++|+++.+....- .+ +.......++..
T Consensus 169 ~~-g~----~p~-~--i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~-~~-----~~g~~p~~la~~~ 234 (328)
T 3dsm_A 169 TI-GI----QPT-S--LVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF-KF-----KLGDWPSEVQLNG 234 (328)
T ss_dssp EC-SS----CBC-C--CEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE-EC-----CTTCCCEEEEECT
T ss_pred Ec-CC----Ccc-c--eEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE-ec-----CCCCCceeEEEec
Confidence 22 11 111 1 13345688888753211 0 1268999999998765421 11 111223455554
Q ss_pred -CCeEEEEeecCCCCeeEEEecCCC
Q 011881 399 -HGKLHVLTKDASRNISILRADPRD 422 (475)
Q Consensus 399 -~~~l~v~GG~~~~~~~v~~~d~~~ 422 (475)
++.||+..+ .+..+|+.+
T Consensus 235 d~~~lyv~~~------~v~~~d~~t 253 (328)
T 3dsm_A 235 TRDTLYWINN------DIWRMPVEA 253 (328)
T ss_dssp TSCEEEEESS------SEEEEETTC
T ss_pred CCCEEEEEcc------EEEEEECCC
Confidence 567777643 466777754
No 29
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.47 E-value=0.039 Score=53.31 Aligned_cols=168 Identities=15% Similarity=0.125 Sum_probs=97.7
Q ss_pred eEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCCcc--------ceeeeEEECCEEEEEeceecCCCCcc
Q 011881 174 AIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSVGR--------AYCKTGILNDKLYVVGGVSRARGGLT 243 (475)
Q Consensus 174 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~R--------~~~~~~~~~~~iyv~GG~~~~~~~~~ 243 (475)
+.+..++.||+ |.. ...+..||+.+.+ |+.-...+... .....+..++.||+.+.
T Consensus 183 ~~~~~~~~v~~-g~~-----~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~--------- 247 (376)
T 3q7m_A 183 APTTAFGAAVV-GGD-----NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY--------- 247 (376)
T ss_dssp CCEEETTEEEE-CCT-----TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT---------
T ss_pred CcEEECCEEEE-EcC-----CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec---------
Confidence 34456787776 322 2378999998765 77543322111 22344566889988652
Q ss_pred cCCeEEEEeCCCCC--eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCc
Q 011881 244 PLQSAEVFDPTTDA--WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNS 321 (475)
Q Consensus 244 ~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 321 (475)
...+..+|+.+++ |+.-.. . . ...+..++.||+.... -+..+||+++++
T Consensus 248 -~g~l~~~d~~tG~~~w~~~~~--~---~---------------~~~~~~~~~l~~~~~~--------g~l~~~d~~tG~ 298 (376)
T 3q7m_A 248 -NGNLTALDLRSGQIMWKRELG--S---V---------------NDFIVDGNRIYLVDQN--------DRVMALTIDGGV 298 (376)
T ss_dssp -TSCEEEEETTTCCEEEEECCC--C---E---------------EEEEEETTEEEEEETT--------CCEEEEETTTCC
T ss_pred -CcEEEEEECCCCcEEeeccCC--C---C---------------CCceEECCEEEEEcCC--------CeEEEEECCCCc
Confidence 2468899998774 775321 1 1 3456678999986421 134889998876
Q ss_pred --eEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc--EEEcCCcCccccCCCCCCCeEEEE
Q 011881 322 --WVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT--WKVVIGKVPIRDFADSESPYLLSA 397 (475)
Q Consensus 322 --W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~--W~~v~~~~p~~~~~~~r~~~~~~~ 397 (475)
|+.-.. . ..... ..++.++.||+... ...+++||+++.+ |+.-.. ........+.
T Consensus 299 ~~w~~~~~--~----~~~~~--~~~~~~~~l~v~~~-----~g~l~~~d~~tG~~~~~~~~~--------~~~~~~~~~~ 357 (376)
T 3q7m_A 299 TLWTQSDL--L----HRLLT--SPVLYNGNLVVGDS-----EGYLHWINVEDGRFVAQQKVD--------SSGFQTEPVA 357 (376)
T ss_dssp EEEEECTT--T----TSCCC--CCEEETTEEEEECT-----TSEEEEEETTTCCEEEEEECC--------TTCBCSCCEE
T ss_pred EEEeeccc--C----CCccc--CCEEECCEEEEEeC-----CCeEEEEECCCCcEEEEEecC--------CCcceeCCEE
Confidence 875321 1 11111 14567899998753 2479999998876 654210 1111123445
Q ss_pred eCCeEEEEe
Q 011881 398 FHGKLHVLT 406 (475)
Q Consensus 398 ~~~~l~v~G 406 (475)
.+++||+..
T Consensus 358 ~~~~l~v~~ 366 (376)
T 3q7m_A 358 ADGKLLIQA 366 (376)
T ss_dssp ETTEEEEEB
T ss_pred ECCEEEEEe
Confidence 688888754
No 30
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.40 E-value=0.058 Score=51.27 Aligned_cols=143 Identities=13% Similarity=-0.009 Sum_probs=88.7
Q ss_pred cceEEEEeCCCCcEEeCC-----CCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCe-EecCCCCcc
Q 011881 194 MRCVRRYDPIANTWNEAT-----SMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAW-SEVPSMPFS 267 (475)
Q Consensus 194 ~~~~~~yd~~t~~W~~~~-----~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W-~~~~~~p~~ 267 (475)
...+..||+.|++...-- ..+.......++..++++|+.... .+.+.++|+.+.+- ..++....|
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~---------~~~v~viD~~t~~~~~~i~~~~~p 86 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN---------SHVIFAIDINTFKEVGRITGFTSP 86 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG---------GTEEEEEETTTCCEEEEEECCSSE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC---------CCEEEEEECcccEEEEEcCCCCCC
Confidence 568999999999886521 123333345566789999998752 36899999998875 334333222
Q ss_pred ccCCCCccccccccccceeeEEE-eCCEEEEeccCCCCCceeccceEEEeCCCCceEE-cCCCCCCCCCCccCCCeEEEE
Q 011881 268 RAQGLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE-MPIGMGEGWPARQAGTKLSVV 345 (475)
Q Consensus 268 r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~p~~~~~~~~~~~ 345 (475)
..++. -++++|+....+ ....++|+++++-.. ++.....+......+ ++.
T Consensus 87 ------------------~~i~~~~~g~lyv~~~~~-------~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~---i~~ 138 (328)
T 3dsm_A 87 ------------------RYIHFLSDEKAYVTQIWD-------YRIFIINPKTYEITGYIECPDMDMESGSTEQ---MVQ 138 (328)
T ss_dssp ------------------EEEEEEETTEEEEEEBSC-------SEEEEEETTTTEEEEEEECTTCCTTTCBCCC---EEE
T ss_pred ------------------cEEEEeCCCeEEEEECCC-------CeEEEEECCCCeEEEEEEcCCccccCCCcce---EEE
Confidence 33444 688999965322 234889999887542 332110000001112 455
Q ss_pred ECCeEEEEcCCCCCCCCeEEEEeCCCCcEEE
Q 011881 346 LDGELYAFDPSSSLNSAKIKVYDQKEDTWKV 376 (475)
Q Consensus 346 ~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 376 (475)
.+++||+..-. ..+.|.++|+++++...
T Consensus 139 ~~~~lyv~~~~---~~~~v~viD~~t~~~~~ 166 (328)
T 3dsm_A 139 YGKYVYVNCWS---YQNRILKIDTETDKVVD 166 (328)
T ss_dssp ETTEEEEEECT---TCCEEEEEETTTTEEEE
T ss_pred ECCEEEEEcCC---CCCEEEEEECCCCeEEE
Confidence 89999998521 13689999999987654
No 31
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.25 E-value=0.054 Score=49.91 Aligned_cols=157 Identities=16% Similarity=0.095 Sum_probs=95.5
Q ss_pred eeEEEeC-CEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEE
Q 011881 173 CAIGAVD-GCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVF 251 (475)
Q Consensus 173 ~~~~~~~-~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~y 251 (475)
++++..+ +.||+..|..+ .+.+.++|+.|++=..--+++.......++..+++||+..-. .+.+.+|
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~---------~~~v~vi 91 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL---------KNIGFIY 91 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT---------CSEEEEE
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec---------CCEEEEE
Confidence 5666655 89999876422 368999999999865543344333455677778999999642 3689999
Q ss_pred eCCCCCeEecCCCCcc-ccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceE-EcCCCC
Q 011881 252 DPTTDAWSEVPSMPFS-RAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWV-EMPIGM 329 (475)
Q Consensus 252 d~~t~~W~~~~~~p~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~~ 329 (475)
|+.+.+ .+..++.+ ..+ .+++.-++++|+..|. ....++|+++.+=. .++...
T Consensus 92 D~~t~~--v~~~i~~g~~~g---------------~glt~Dg~~l~vs~gs--------~~l~viD~~t~~v~~~I~Vg~ 146 (266)
T 2iwa_A 92 DRRTLS--NIKNFTHQMKDG---------------WGLATDGKILYGSDGT--------SILYEIDPHTFKLIKKHNVKY 146 (266)
T ss_dssp ETTTTE--EEEEEECCSSSC---------------CEEEECSSSEEEECSS--------SEEEEECTTTCCEEEEEECEE
T ss_pred ECCCCc--EEEEEECCCCCe---------------EEEEECCCEEEEECCC--------CeEEEEECCCCcEEEEEEECC
Confidence 998764 22223222 122 3444446678986541 12378999887643 333211
Q ss_pred CCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 330 GEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 330 ~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
. +++....-.+...+++||+--. ..+.|.+-|+++.+
T Consensus 147 -~--~~p~~~~nele~~dg~lyvn~~----~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 147 -N--GHRVIRLNELEYINGEVWANIW----QTDCIARISAKDGT 183 (266)
T ss_dssp -T--TEECCCEEEEEEETTEEEEEET----TSSEEEEEETTTCC
T ss_pred -C--CcccccceeEEEECCEEEEecC----CCCeEEEEECCCCc
Confidence 0 1111111113444889997643 24689999999875
No 32
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.98 E-value=0.035 Score=53.62 Aligned_cols=146 Identities=18% Similarity=0.162 Sum_probs=78.6
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
+..||+.|+.+ ..+.+||+.+++....-..+. .-..++.. +..||+.+.. ...+.+||+.++
T Consensus 43 g~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~---------~~~v~v~d~~~~ 106 (391)
T 1l0q_A 43 GTKVYVANAHS-----NDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMA---------SSTLSVIDTTSN 106 (391)
T ss_dssp SSEEEEEEGGG-----TEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETT---------TTEEEEEETTTT
T ss_pred CCEEEEECCCC-----CeEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEEECC---------CCEEEEEECCCC
Confidence 34577776543 478999998887654322222 11223332 3457676542 257999999988
Q ss_pred CeEecCCCCccccCCCCccccccccccceeeEEE-eCC-EEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCC
Q 011881 257 AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-YMG-RLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWP 334 (475)
Q Consensus 257 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p 334 (475)
+-...-...... .+++. -++ .+|+.++.++ ...+||+.+++....-. ...
T Consensus 107 ~~~~~~~~~~~~-----------------~~~~~s~dg~~l~~~~~~~~-------~v~~~d~~~~~~~~~~~-~~~--- 158 (391)
T 1l0q_A 107 TVAGTVKTGKSP-----------------LGLALSPDGKKLYVTNNGDK-------TVSVINTVTKAVINTVS-VGR--- 158 (391)
T ss_dssp EEEEEEECSSSE-----------------EEEEECTTSSEEEEEETTTT-------EEEEEETTTTEEEEEEE-CCS---
T ss_pred eEEEEEeCCCCc-----------------ceEEECCCCCEEEEEeCCCC-------EEEEEECCCCcEEEEEe-cCC---
Confidence 654322111100 22232 234 4767665432 24789998887654322 110
Q ss_pred CccCCCeEEEE-ECC-eEEEEcCCCCCCCCeEEEEeCCCCcEEE
Q 011881 335 ARQAGTKLSVV-LDG-ELYAFDPSSSLNSAKIKVYDQKEDTWKV 376 (475)
Q Consensus 335 ~~~~~~~~~~~-~~~-~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 376 (475)
.. .. ++. .++ .||+.++. .+.+.+||+.+.+-..
T Consensus 159 ~~---~~-~~~~~dg~~l~~~~~~----~~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 159 SP---KG-IAVTPDGTKVYVANFD----SMSISVIDTVTNSVID 194 (391)
T ss_dssp SE---EE-EEECTTSSEEEEEETT----TTEEEEEETTTTEEEE
T ss_pred Cc---ce-EEECCCCCEEEEEeCC----CCEEEEEECCCCeEEE
Confidence 01 11 222 234 56676653 2579999998876544
No 33
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.95 E-value=0.08 Score=47.90 Aligned_cols=153 Identities=20% Similarity=0.143 Sum_probs=92.5
Q ss_pred eeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEecc
Q 011881 221 KTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQS 300 (475)
Q Consensus 221 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG 300 (475)
.....++.||+..|.. + .+.+.++|+++++=..--+++....+ .+++..+++||+...
T Consensus 25 GL~~~~~~LyestG~~----g---~S~v~~vD~~tgkv~~~~~l~~~~fg---------------eGi~~~~~~ly~ltw 82 (243)
T 3mbr_X 25 GLFYLRGHLYESTGET----G---RSSVRKVDLETGRILQRAEVPPPYFG---------------AGIVAWRDRLIQLTW 82 (243)
T ss_dssp EEEEETTEEEEEECCT----T---SCEEEEEETTTCCEEEEEECCTTCCE---------------EEEEEETTEEEEEES
T ss_pred cEEEECCEEEEECCCC----C---CceEEEEECCCCCEEEEEeCCCCcce---------------eEEEEeCCEEEEEEe
Confidence 5666789999998852 1 36899999999986554444443333 677888999999754
Q ss_pred CCCCCceeccceEEEeCCCCceEE-cCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCC
Q 011881 301 LYSWPFFVDVGGEIYDPDTNSWVE-MPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIG 379 (475)
Q Consensus 301 ~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~ 379 (475)
.. .-+.+||+++.+=.. ++. ...|.+ ++..+++||+-.| .+.++.+|+++.+-..-
T Consensus 83 ~~-------~~v~v~D~~tl~~~~ti~~--------~~~Gwg-lt~dg~~L~vSdg-----s~~l~~iDp~t~~~~~~-- 139 (243)
T 3mbr_X 83 RN-------HEGFVYDLATLTPRARFRY--------PGEGWA-LTSDDSHLYMSDG-----TAVIRKLDPDTLQQVGS-- 139 (243)
T ss_dssp SS-------SEEEEEETTTTEEEEEEEC--------SSCCCE-EEECSSCEEEECS-----SSEEEEECTTTCCEEEE--
T ss_pred eC-------CEEEEEECCcCcEEEEEeC--------CCCceE-EeeCCCEEEEECC-----CCeEEEEeCCCCeEEEE--
Confidence 33 234899998866432 332 112333 4555677898876 25899999998764321
Q ss_pred cCccccCCCC-CCCeEEEEeCCeEEEEeecCCCCeeEEEecCCC
Q 011881 380 KVPIRDFADS-ESPYLLSAFHGKLHVLTKDASRNISILRADPRD 422 (475)
Q Consensus 380 ~~p~~~~~~~-r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~~ 422 (475)
++...-+.+ +..-.+...+|+||+-- ...+ .+...|+.+
T Consensus 140 -I~V~~~g~~~~~lNeLe~~~G~lyanv-w~s~--~I~vIDp~t 179 (243)
T 3mbr_X 140 -IKVTAGGRPLDNLNELEWVNGELLANV-WLTS--RIARIDPAS 179 (243)
T ss_dssp -EECEETTEECCCEEEEEEETTEEEEEE-TTTT--EEEEECTTT
T ss_pred -EEEccCCcccccceeeEEeCCEEEEEE-CCCC--eEEEEECCC
Confidence 111111111 11113445688888533 2223 366666654
No 34
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.60 E-value=0.12 Score=47.35 Aligned_cols=153 Identities=15% Similarity=0.060 Sum_probs=89.4
Q ss_pred eeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEecc
Q 011881 221 KTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQS 300 (475)
Q Consensus 221 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG 300 (475)
.....++.||+..|.. + .+.+.++|++|++=..--+++....+ .+++..+++||+...
T Consensus 47 GL~~~~~~LyestG~~----g---~S~v~~vD~~Tgkv~~~~~l~~~~Fg---------------eGit~~g~~ly~ltw 104 (262)
T 3nol_A 47 GFFYRNGYFYESTGLN----G---RSSIRKVDIESGKTLQQIELGKRYFG---------------EGISDWKDKIVGLTW 104 (262)
T ss_dssp EEEEETTEEEEEEEET----T---EEEEEEECTTTCCEEEEEECCTTCCE---------------EEEEEETTEEEEEES
T ss_pred eEEEECCEEEEECCCC----C---CceEEEEECCCCcEEEEEecCCccce---------------eEEEEeCCEEEEEEe
Confidence 4445589999998852 1 35899999999975543334432222 567888999999754
Q ss_pred CCCCCceeccceEEEeCCCCceE-EcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEE-cC
Q 011881 301 LYSWPFFVDVGGEIYDPDTNSWV-EMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKV-VI 378 (475)
Q Consensus 301 ~~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~-v~ 378 (475)
.. .-+.+||+++.+=. +++. + ..|.+ .+..+++||+..| .+.++.+|+++.+-.. +.
T Consensus 105 ~~-------~~v~v~D~~t~~~~~ti~~------~--~eG~g-lt~dg~~L~~SdG-----s~~i~~iDp~T~~v~~~I~ 163 (262)
T 3nol_A 105 KN-------GLGFVWNIRNLRQVRSFNY------D--GEGWG-LTHNDQYLIMSDG-----TPVLRFLDPESLTPVRTIT 163 (262)
T ss_dssp SS-------SEEEEEETTTCCEEEEEEC------S--SCCCC-EEECSSCEEECCS-----SSEEEEECTTTCSEEEEEE
T ss_pred eC-------CEEEEEECccCcEEEEEEC------C--CCceE-EecCCCEEEEECC-----CCeEEEEcCCCCeEEEEEE
Confidence 32 23489999887754 3332 1 12222 4555667888765 2589999999875432 21
Q ss_pred CcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCCC
Q 011881 379 GKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPRD 422 (475)
Q Consensus 379 ~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~~ 422 (475)
......+... .-.+...+|+||+-- ...+ .+...|+.+
T Consensus 164 --V~~~g~~~~~-lNELe~~~G~lyan~-w~~~--~I~vIDp~t 201 (262)
T 3nol_A 164 --VTAHGEELPE-LNELEWVDGEIFANV-WQTN--KIVRIDPET 201 (262)
T ss_dssp --CEETTEECCC-EEEEEEETTEEEEEE-TTSS--EEEEECTTT
T ss_pred --eccCCccccc-cceeEEECCEEEEEE-ccCC--eEEEEECCC
Confidence 1100001111 002444588888532 2233 366667654
No 35
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=96.48 E-value=0.5 Score=43.18 Aligned_cols=184 Identities=10% Similarity=0.138 Sum_probs=95.0
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
.++.||+.+.. ....+.+||+....-..+..... ..-..+++. ++++|+.... ...+.+||+...
T Consensus 87 ~~g~l~v~~~~----~~~~i~~~d~~g~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~~g~ 152 (286)
T 1q7f_A 87 NSGDIIVTERS----PTHQIQIYNQYGQFVRKFGATIL-QHPRGVTVDNKGRIIVVECK---------VMRVIIFDQNGN 152 (286)
T ss_dssp TTTEEEEEECG----GGCEEEEECTTSCEEEEECTTTC-SCEEEEEECTTSCEEEEETT---------TTEEEEECTTSC
T ss_pred CCCeEEEEcCC----CCCEEEEECCCCcEEEEecCccC-CCceEEEEeCCCCEEEEECC---------CCEEEEEcCCCC
Confidence 36889988632 12478899965544443322111 111233332 6789987642 257899998665
Q ss_pred CeEecCC---CCccccCCCCccccccccccceeeEEE-eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCC
Q 011881 257 AWSEVPS---MPFSRAQGLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEG 332 (475)
Q Consensus 257 ~W~~~~~---~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~ 332 (475)
....+.. +..+ .+++. -++++|+....+ ....+||+.......+.......
T Consensus 153 ~~~~~~~~~~~~~p------------------~~i~~~~~g~l~v~~~~~-------~~i~~~~~~g~~~~~~~~~g~~~ 207 (286)
T 1q7f_A 153 VLHKFGCSKHLEFP------------------NGVVVNDKQEIFISDNRA-------HCVKVFNYEGQYLRQIGGEGITN 207 (286)
T ss_dssp EEEEEECTTTCSSE------------------EEEEECSSSEEEEEEGGG-------TEEEEEETTCCEEEEESCTTTSC
T ss_pred EEEEeCCCCccCCc------------------EEEEECCCCCEEEEECCC-------CEEEEEcCCCCEEEEEccCCccC
Confidence 4443321 1111 23333 368899864322 23488998665544444311000
Q ss_pred CCCccCCCeEEEE-ECCeEEEEcCCCCCCCC-eEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEE-eCCeEEEEeecC
Q 011881 333 WPARQAGTKLSVV-LDGELYAFDPSSSLNSA-KIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSA-FHGKLHVLTKDA 409 (475)
Q Consensus 333 ~p~~~~~~~~~~~-~~~~lyv~GG~~~~~~~-~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~-~~~~l~v~GG~~ 409 (475)
.| .. +++ -+|+||+.+.. .+ .|.+||++...-..+.... .. ....+++. -+|+|||.. .
T Consensus 208 ~p-----~~-i~~d~~G~l~v~~~~----~~~~i~~~~~~g~~~~~~~~~~-----~~-~~~~~i~~~~~g~l~vs~--~ 269 (286)
T 1q7f_A 208 YP-----IG-VGINSNGEILIADNH----NNFNLTIFTQDGQLISALESKV-----KH-AQCFDVALMDDGSVVLAS--K 269 (286)
T ss_dssp SE-----EE-EEECTTCCEEEEECS----SSCEEEEECTTSCEEEEEEESS-----CC-SCEEEEEEETTTEEEEEE--T
T ss_pred CC-----cE-EEECCCCCEEEEeCC----CCEEEEEECCCCCEEEEEcccC-----CC-CcceeEEECCCCcEEEEC--C
Confidence 01 11 233 36789998642 23 7999998765444432111 11 11234443 378888874 3
Q ss_pred CCCeeEEEe
Q 011881 410 SRNISILRA 418 (475)
Q Consensus 410 ~~~~~v~~~ 418 (475)
++.+.+..+
T Consensus 270 ~~~v~v~~~ 278 (286)
T 1q7f_A 270 DYRLYIYRY 278 (286)
T ss_dssp TTEEEEEEC
T ss_pred CCeEEEEEc
Confidence 455555544
No 36
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.47 E-value=0.43 Score=46.77 Aligned_cols=194 Identities=10% Similarity=-0.044 Sum_probs=101.8
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCE-EEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDK-LYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
+++.+++++.++ ....++++|+.+.+...+...+. ...+.+.. +++ |++.+.. + ....++++|+.+.
T Consensus 189 dg~~la~~s~~~--~~~~i~~~d~~tg~~~~l~~~~~--~~~~~~~spdg~~la~~~~~----~---g~~~i~~~d~~~~ 257 (415)
T 2hqs_A 189 DGSKLAYVTFES--GRSALVIQTLANGAVRQVASFPR--HNGAPAFSPDGSKLAFALSK----T---GSLNLYVMDLASG 257 (415)
T ss_dssp TSSEEEEEECTT--SSCEEEEEETTTCCEEEEECCSS--CEEEEEECTTSSEEEEEECT----T---SSCEEEEEETTTC
T ss_pred CCCEEEEEEecC--CCcEEEEEECCCCcEEEeecCCC--cccCEEEcCCCCEEEEEEec----C---CCceEEEEECCCC
Confidence 454444544332 13589999999988776654332 11222222 454 5544432 1 1357999999998
Q ss_pred CeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccC-CCCCceeccceEEEeCCCCceEEcCCCCCCCCCC
Q 011881 257 AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSL-YSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPA 335 (475)
Q Consensus 257 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~ 335 (475)
+...+........ .....-+|+..++++. ++. ...+.+|+.+++-..+....
T Consensus 258 ~~~~l~~~~~~~~----------------~~~~spdg~~l~~~s~~~g~-----~~i~~~d~~~~~~~~l~~~~------ 310 (415)
T 2hqs_A 258 QIRQVTDGRSNNT----------------EPTWFPDSQNLAFTSDQAGR-----PQVYKVNINGGAPQRITWEG------ 310 (415)
T ss_dssp CEEECCCCSSCEE----------------EEEECTTSSEEEEEECTTSS-----CEEEEEETTSSCCEECCCSS------
T ss_pred CEEeCcCCCCccc----------------ceEECCCCCEEEEEECCCCC-----cEEEEEECCCCCEEEEecCC------
Confidence 8776654321110 1112235554444332 221 12377898887755543210
Q ss_pred ccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEE-EeCCeEEEEeecCCCCee
Q 011881 336 RQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLS-AFHGKLHVLTKDASRNIS 414 (475)
Q Consensus 336 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~-~~~~~l~v~GG~~~~~~~ 414 (475)
. .........+|+.+++++... ....++.+|+++.+...+... . ....++ .-+|+.+++++..+....
T Consensus 311 ~-~~~~~~~spdG~~l~~~~~~~-g~~~i~~~d~~~~~~~~l~~~--------~-~~~~~~~spdg~~l~~~s~~~~~~~ 379 (415)
T 2hqs_A 311 S-QNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQVLSST--------F-LDETPSLAPNGTMVIYSSSQGMGSV 379 (415)
T ss_dssp S-EEEEEEECTTSSEEEEEEECS-SCEEEEEEETTTCCEEECCCS--------S-SCEEEEECTTSSEEEEEEEETTEEE
T ss_pred C-cccCeEECCCCCEEEEEECcC-CceEEEEEECCCCCEEEecCC--------C-CcCCeEEcCCCCEEEEEEcCCCccE
Confidence 1 111112234666555544321 135899999999888766421 1 122333 337787777776655545
Q ss_pred EEEecCC
Q 011881 415 ILRADPR 421 (475)
Q Consensus 415 v~~~d~~ 421 (475)
+..+|+.
T Consensus 380 l~~~d~~ 386 (415)
T 2hqs_A 380 LNLVSTD 386 (415)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 6666665
No 37
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=96.47 E-value=0.47 Score=42.75 Aligned_cols=183 Identities=11% Similarity=0.089 Sum_probs=94.8
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
++.||+... ...+.+||+.+.....+..... ..-..++.. +++||+.... ...+.+||..+..
T Consensus 77 ~g~l~v~~~------~~~i~~~d~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~~~~ 140 (270)
T 1rwi_B 77 AGTVYVTDF------NNRVVTLAAGSNNQTVLPFDGL-NYPEGLAVDTQGAVYVADRG---------NNRVVKLAAGSKT 140 (270)
T ss_dssp TCCEEEEET------TTEEEEECTTCSCCEECCCCSC-SSEEEEEECTTCCEEEEEGG---------GTEEEEECTTCCS
T ss_pred CCCEEEEcC------CCEEEEEeCCCceEeeeecCCc-CCCcceEECCCCCEEEEECC---------CCEEEEEECCCce
Confidence 567888754 2478999998876554432111 112233333 6789987542 2578888877765
Q ss_pred eEecCCCCccccCCCCccccccccccceeeEEE-eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCc
Q 011881 258 WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPAR 336 (475)
Q Consensus 258 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~ 336 (475)
............ .+++. -+++||+..... ....+||+.+..-..... .. .
T Consensus 141 ~~~~~~~~~~~p----------------~~i~~~~~g~l~v~~~~~-------~~i~~~~~~~~~~~~~~~-~~--~--- 191 (270)
T 1rwi_B 141 QTVLPFTGLNDP----------------DGVAVDNSGNVYVTDTDN-------NRVVKLEAESNNQVVLPF-TD--I--- 191 (270)
T ss_dssp CEECCCCSCCSC----------------CCEEECTTCCEEEEEGGG-------TEEEEECTTTCCEEECCC-SS--C---
T ss_pred eEeeccccCCCc----------------eeEEEeCCCCEEEEECCC-------CEEEEEecCCCceEeecc-cC--C---
Confidence 543321110011 23333 367899864321 234789988766444321 10 0
Q ss_pred cCCCeEEEE-ECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEe-CCeEEEEeecCCCCee
Q 011881 337 QAGTKLSVV-LDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAF-HGKLHVLTKDASRNIS 414 (475)
Q Consensus 337 ~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~GG~~~~~~~ 414 (475)
.....+++ -+|.||+.... .+.|.+||+....-..+. . .......+++.- +|+||+..... +.
T Consensus 192 -~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~~~----~---~~~~~p~~i~~~~~g~l~v~~~~~-~~-- 256 (270)
T 1rwi_B 192 -TAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTVLP----F---TGLNTPLAVAVDSDRTVYVADRGN-DR-- 256 (270)
T ss_dssp -CSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEECC----C---CSCSCEEEEEECTTCCEEEEEGGG-TE--
T ss_pred -CCceEEEECCCCCEEEEECC----CCcEEEEcCCCCcceeec----c---CCCCCceeEEECCCCCEEEEECCC-CE--
Confidence 11111333 25689988642 257999999775433321 0 111122344443 57888765433 33
Q ss_pred EEEecCC
Q 011881 415 ILRADPR 421 (475)
Q Consensus 415 v~~~d~~ 421 (475)
+..+++.
T Consensus 257 v~~~~~~ 263 (270)
T 1rwi_B 257 VVKLTSL 263 (270)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 4444443
No 38
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.45 E-value=0.0014 Score=60.71 Aligned_cols=44 Identities=23% Similarity=0.389 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHhccCChhhhHHHHHhhhhhhhhcCChhhHHh
Q 011881 42 LIPSLPDELSIQILARVPRIFYLNLRAVSRKWKATVTSPELFEV 85 (475)
Q Consensus 42 ~~~~LP~dl~~~iL~~lp~~~l~~l~~vck~W~~l~~s~~~~~~ 85 (475)
.+..||+|++..||+.|+..+++++..|||.|+.+..++.+-+.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~ 47 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRY 47 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 34579999999999999999999999999999999999887654
No 39
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.39 E-value=0.11 Score=49.92 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=75.4
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
+..||+.+..+ ..+.+||+.+++-...-... ..-..++.. +..||+.++. ...+.+||+.+.
T Consensus 85 g~~l~~~~~~~-----~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~---------~~~v~~~d~~~~ 148 (391)
T 1l0q_A 85 GKQVYVTNMAS-----STLSVIDTTSNTVAGTVKTG--KSPLGLALSPDGKKLYVTNNG---------DKTVSVINTVTK 148 (391)
T ss_dssp SSEEEEEETTT-----TEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEETT---------TTEEEEEETTTT
T ss_pred CCEEEEEECCC-----CEEEEEECCCCeEEEEEeCC--CCcceEEECCCCCEEEEEeCC---------CCEEEEEECCCC
Confidence 44576665432 47999999988754432222 112233333 3467777653 258999999887
Q ss_pred CeEecCCCCccccCCCCccccccccccceeeEEE-eCC-EEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCC
Q 011881 257 AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-YMG-RLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWP 334 (475)
Q Consensus 257 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p 334 (475)
+....-...... ..++. -++ .||+.++.++ ...+||+.+++-...-. ..
T Consensus 149 ~~~~~~~~~~~~-----------------~~~~~~~dg~~l~~~~~~~~-------~v~~~d~~~~~~~~~~~-~~---- 199 (391)
T 1l0q_A 149 AVINTVSVGRSP-----------------KGIAVTPDGTKVYVANFDSM-------SISVIDTVTNSVIDTVK-VE---- 199 (391)
T ss_dssp EEEEEEECCSSE-----------------EEEEECTTSSEEEEEETTTT-------EEEEEETTTTEEEEEEE-CS----
T ss_pred cEEEEEecCCCc-----------------ceEEECCCCCEEEEEeCCCC-------EEEEEECCCCeEEEEEe-cC----
Confidence 654432111100 22222 233 5666654332 23789998876544322 10
Q ss_pred CccCCCeEEEEECCe-EEEEcCCCCCCCCeEEEEeCCCCcE
Q 011881 335 ARQAGTKLSVVLDGE-LYAFDPSSSLNSAKIKVYDQKEDTW 374 (475)
Q Consensus 335 ~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~v~~yd~~~~~W 374 (475)
... ...+..-+++ ||+.+. .. ..+.+.+||+.+.+-
T Consensus 200 ~~~--~~~~~~~~g~~l~~~~~-~~-~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 200 AAP--SGIAVNPEGTKAYVTNV-DK-YFNTVSMIDTGTNKI 236 (391)
T ss_dssp SEE--EEEEECTTSSEEEEEEE-CS-SCCEEEEEETTTTEE
T ss_pred CCc--cceEECCCCCEEEEEec-Cc-CCCcEEEEECCCCeE
Confidence 010 1111222454 555442 11 236899999987754
No 40
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.18 E-value=0.47 Score=46.65 Aligned_cols=192 Identities=14% Similarity=0.139 Sum_probs=96.7
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
.++..++.|+.+ ..+.+||+.+.+-... +........+..+++..++.|+. ...+.+||..+.+
T Consensus 247 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~ 310 (445)
T 2ovr_B 247 YDGRRVVSGAYD-----FMVKVWDPETETCLHT--LQGHTNRVYSLQFDGIHVVSGSL---------DTSIRVWDVETGN 310 (445)
T ss_dssp ECSSCEEEEETT-----SCEEEEEGGGTEEEEE--ECCCSSCEEEEEECSSEEEEEET---------TSCEEEEETTTCC
T ss_pred ECCCEEEEEcCC-----CEEEEEECCCCcEeEE--ecCCCCceEEEEECCCEEEEEeC---------CCeEEEEECCCCC
Confidence 366666666654 3578888876643221 11111222333447777777764 2578999998875
Q ss_pred eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEE-cCCCCCCCCCCc
Q 011881 258 WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE-MPIGMGEGWPAR 336 (475)
Q Consensus 258 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~p~~ 336 (475)
-... +...... ......++.+++.|+.++ ...+||..+++-.. +.. +..
T Consensus 311 ~~~~--~~~~~~~---------------v~~~~~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~~------~~~ 360 (445)
T 2ovr_B 311 CIHT--LTGHQSL---------------TSGMELKDNILVSGNADS-------TVKIWDIKTGQCLQTLQG------PNK 360 (445)
T ss_dssp EEEE--ECCCCSC---------------EEEEEEETTEEEEEETTS-------CEEEEETTTCCEEEEECS------TTS
T ss_pred EEEE--EcCCccc---------------EEEEEEeCCEEEEEeCCC-------eEEEEECCCCcEEEEEcc------CCC
Confidence 3221 1111111 222334555666666543 23789987765432 221 111
Q ss_pred cCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEe-CCeEEEEeecCCC-Cee
Q 011881 337 QAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAF-HGKLHVLTKDASR-NIS 414 (475)
Q Consensus 337 ~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~GG~~~~-~~~ 414 (475)
.......+..++.+++.|+.+ +.|.+||..+.+....-..... ........++... ++.++++|+.++. ...
T Consensus 361 ~~~~v~~~~~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~ 434 (445)
T 2ovr_B 361 HQSAVTCLQFNKNFVITSSDD----GTVKLWDLKTGEFIRNLVTLES--GGSGGVVWRIRASNTKLVCAVGSRNGTEETK 434 (445)
T ss_dssp CSSCEEEEEECSSEEEEEETT----SEEEEEETTTCCEEEEEEECTT--GGGTCEEEEEEECSSEEEEEEECSSSSSCCE
T ss_pred CCCCEEEEEECCCEEEEEeCC----CeEEEEECCCCceeeeeecccc--CCCCceEEEEEecCCEEEEEEcccCCCCccE
Confidence 112222455677777777743 5899999998765442100000 0111112233333 4556666665554 334
Q ss_pred EEEecCC
Q 011881 415 ILRADPR 421 (475)
Q Consensus 415 v~~~d~~ 421 (475)
+..+|..
T Consensus 435 l~v~df~ 441 (445)
T 2ovr_B 435 LLVLDFD 441 (445)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 5555544
No 41
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=96.15 E-value=0.28 Score=43.18 Aligned_cols=156 Identities=15% Similarity=0.184 Sum_probs=79.9
Q ss_pred EEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEe--C----CCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCC
Q 011881 175 IGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNE--A----TSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQ 246 (475)
Q Consensus 175 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~--~----~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 246 (475)
++..++++|+|=| ..+|+++.....+.. + +.+|. ... ++... ++++|+|-| +
T Consensus 29 i~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG-----------~ 88 (207)
T 1pex_A 29 ITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRG-----------R 88 (207)
T ss_dssp EEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEET-----------T
T ss_pred EEeCCCcEEEEEC-------CEEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEcc-----------C
Confidence 4457999999965 367777765433321 1 23442 122 22223 689999987 4
Q ss_pred eEEEEeCCCCCeEecCCCCccccC-CCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCceE
Q 011881 247 SAEVFDPTTDAWSEVPSMPFSRAQ-GLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWV 323 (475)
Q Consensus 247 ~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 323 (475)
..++|+..+ ..+.-|.+... +.+.. ...| -++... ++++|+|-|. .-++||..+++=.
T Consensus 89 ~~w~~~~~~----~~~gyPk~I~~~GlP~~-----~~~I-DAA~~~~~~gk~yfFkG~---------~ywr~d~~~~~~d 149 (207)
T 1pex_A 89 KFWALNGYD----ILEGYPKKISELGLPKE-----VKKI-SAAVHFEDTGKTLLFSGN---------QVWRYDDTNHIMD 149 (207)
T ss_dssp EEEEESTTC----CCTTCSEESTTTTCCTT-----CCCC-CEEEECTTTSEEEEEETT---------EEEEEETTTTEEC
T ss_pred EEEEEeCCe----eccCCceeccccCCCCC-----Cccc-cEEEEeCCCCEEEEEeCC---------EEEEEeCcCcccc
Confidence 677786432 12211211111 01100 0000 233332 4899998762 2388988765311
Q ss_pred E-cCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEE
Q 011881 324 E-MPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWK 375 (475)
Q Consensus 324 ~-~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~ 375 (475)
. -+..+...||.-.....++...++++|++-| +..+.||..+++=.
T Consensus 150 ~gyPr~i~~~~~Gip~~iDaAf~~~g~~YfFkg------~~y~rf~~~~~~v~ 196 (207)
T 1pex_A 150 KDYPRLIEEDFPGIGDKVDAVYEKNGYIYFFNG------PIQFEYSIWSNRIV 196 (207)
T ss_dssp SSCCCBHHHHSTTSCSCCSEEEEETTEEEEEET------TEEEEEETTTTEEE
T ss_pred CCCCccHHHcCCCCCCCccEEEEcCCcEEEEEC------CEEEEEeCCccEEe
Confidence 0 0000000111111122335567999999977 58999999876543
No 42
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.13 E-value=0.89 Score=42.56 Aligned_cols=154 Identities=11% Similarity=-0.002 Sum_probs=76.2
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCc--------cceeeeEEE--CCEEEEEeceecCCCCcccCCeE
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVG--------RAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSA 248 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~--------R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 248 (475)
++.+|+.+..+ ..+.+||+.+.+-...-+.+.. ..-..++.. ++.+|+.+... ...+
T Consensus 100 g~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--------~~~i 166 (353)
T 3vgz_A 100 TQTLWFGNTVN-----SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK--------ESVI 166 (353)
T ss_dssp TTEEEEEETTT-----TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS--------SCEE
T ss_pred CCEEEEEecCC-----CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC--------CceE
Confidence 45688876532 4799999988774332112111 111223332 45678776321 2579
Q ss_pred EEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEE-EeC-CEEEEeccCCCCCceeccceEEEeCCCCceEEcC
Q 011881 249 EVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYM-GRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMP 326 (475)
Q Consensus 249 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~ 326 (475)
.+||+.+.+-...-+...... .+++ .-+ +.+|+... + ....+||+.+++-...-
T Consensus 167 ~~~d~~~~~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~-~-------~~i~~~d~~~~~~~~~~ 222 (353)
T 3vgz_A 167 WVVDGGNIKLKTAIQNTGKMS----------------TGLALDSEGKRLYTTNA-D-------GELITIDTADNKILSRK 222 (353)
T ss_dssp EEEETTTTEEEEEECCCCTTC----------------CCCEEETTTTEEEEECT-T-------SEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCceEEEecCCCCcc----------------ceEEECCCCCEEEEEcC-C-------CeEEEEECCCCeEEEEE
Confidence 999998875332211111101 1222 223 45666543 1 12368998877643221
Q ss_pred CCCCCCCCCccCCCeEEEE-E-CCeEEEEcCCCCCCCCeEEEEeCCCCcEEE
Q 011881 327 IGMGEGWPARQAGTKLSVV-L-DGELYAFDPSSSLNSAKIKVYDQKEDTWKV 376 (475)
Q Consensus 327 ~~~~~~~p~~~~~~~~~~~-~-~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 376 (475)
. ... .........++. - ++.||+... ..+.+.+||+.+.+...
T Consensus 223 ~-~~~--~~~~~~~~~~~~s~dg~~l~~~~~----~~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 223 K-LLD--DGKEHFFINISLDTARQRAFITDS----KAAEVLVVDTRNGNILA 267 (353)
T ss_dssp E-CCC--SSSCCCEEEEEEETTTTEEEEEES----SSSEEEEEETTTCCEEE
T ss_pred E-cCC--CCCCcccceEEECCCCCEEEEEeC----CCCEEEEEECCCCcEEE
Confidence 1 100 001111111222 2 445777653 23689999998876544
No 43
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.11 E-value=0.23 Score=48.49 Aligned_cols=153 Identities=10% Similarity=0.011 Sum_probs=81.0
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCC---CccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMS---VGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDP 253 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p---~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 253 (475)
++.+++.++.+ ..+.+||+.+.+.....+.. ........+.+ ++++|+.++. ...+.+||+
T Consensus 133 ~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~---------d~~v~~~d~ 198 (433)
T 3bws_A 133 NTRLAIPLLED-----EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ---------ANAVHVFDL 198 (433)
T ss_dssp SSEEEEEBTTS-----SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG---------GTEEEEEET
T ss_pred CCeEEEEeCCC-----CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC---------CCEEEEEEC
Confidence 67888887643 35899999988776543221 11112222333 7888888874 257899999
Q ss_pred CCCCeEecCCCCccccCCCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCC
Q 011881 254 TTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGE 331 (475)
Q Consensus 254 ~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 331 (475)
.+.+-...-....... .+++.. +..+|+.++.++ ...+||+.+++....-. ..
T Consensus 199 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~-------~i~~~d~~~~~~~~~~~-~~- 253 (433)
T 3bws_A 199 KTLAYKATVDLTGKWS----------------KILLYDPIRDLVYCSNWISE-------DISVIDRKTKLEIRKTD-KI- 253 (433)
T ss_dssp TTCCEEEEEECSSSSE----------------EEEEEETTTTEEEEEETTTT-------EEEEEETTTTEEEEECC-CC-
T ss_pred CCceEEEEEcCCCCCe----------------eEEEEcCCCCEEEEEecCCC-------cEEEEECCCCcEEEEec-CC-
Confidence 8865332111110000 222322 345666654332 23789998877654322 11
Q ss_pred CCCCccCCCeEEEE-ECCeEEEEcCCCCC----CCCeEEEEeCCCCcEEE
Q 011881 332 GWPARQAGTKLSVV-LDGELYAFDPSSSL----NSAKIKVYDQKEDTWKV 376 (475)
Q Consensus 332 ~~p~~~~~~~~~~~-~~~~lyv~GG~~~~----~~~~v~~yd~~~~~W~~ 376 (475)
.. ...++. .+++.+++++.... ....|.+||+.+.+-..
T Consensus 254 ---~~---~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~ 297 (433)
T 3bws_A 254 ---GL---PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID 297 (433)
T ss_dssp ---SE---EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE
T ss_pred ---CC---ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe
Confidence 01 111222 24544444332111 23589999998875443
No 44
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.10 E-value=1.1 Score=43.94 Aligned_cols=183 Identities=11% Similarity=0.072 Sum_probs=91.7
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
++.+++.|+.++ .+.+||..+.+-...-....... .+++.. +++.++.|+. ...+.+||..+.+
T Consensus 279 ~~~~l~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~sg~~---------dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 279 HGNIVVSGSYDN-----TLIVWDVAQMKCLYILSGHTDRI-YSTIYDHERKRCISASM---------DTTIRIWDLENGE 343 (464)
T ss_dssp ETTEEEEEETTS-----CEEEEETTTTEEEEEECCCSSCE-EEEEEETTTTEEEEEET---------TSCEEEEETTTTE
T ss_pred CCCEEEEEeCCC-----eEEEEECCCCcEEEEecCCCCCE-EEEEEcCCCCEEEEEeC---------CCcEEEEECCCCc
Confidence 444556665443 68889988765432211111111 122222 5566666664 2578999998765
Q ss_pred eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCcc
Q 011881 258 WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQ 337 (475)
Q Consensus 258 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~ 337 (475)
-... +...... ......++...+.|+.++ ...+||+.+..-..... . ..
T Consensus 344 ~~~~--~~~h~~~---------------v~~~~~~~~~l~s~s~dg-------~v~vwd~~~~~~~~~~~-~------~~ 392 (464)
T 3v7d_B 344 LMYT--LQGHTAL---------------VGLLRLSDKFLVSAAADG-------SIRGWDANDYSRKFSYH-H------TN 392 (464)
T ss_dssp EEEE--ECCCSSC---------------EEEEEECSSEEEEEETTS-------EEEEEETTTCCEEEEEE-C------TT
T ss_pred EEEE--EeCCCCc---------------EEEEEEcCCEEEEEeCCC-------cEEEEECCCCceeeeec-C------CC
Confidence 3221 1111111 233444566666666543 23788988765322111 0 11
Q ss_pred CCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEE
Q 011881 338 AGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILR 417 (475)
Q Consensus 338 ~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~ 417 (475)
.....+...++++++.|+ + +.+.+||.++++-..... .... .....+.++++.+++++..+....+..
T Consensus 393 ~~~~~~~~~~~~~l~~~~-d----g~i~iwd~~~g~~~~~~~------~~~~-~~v~~v~~~~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 393 LSAITTFYVSDNILVSGS-E----NQFNIYNLRSGKLVHANI------LKDA-DQIWSVNFKGKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CCCEEEEEECSSEEEEEE-T----TEEEEEETTTCCEEESCT------TTTC-SEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred CccEEEEEeCCCEEEEec-C----CeEEEEECCCCcEEehhh------ccCC-CcEEEEEecCCEEEEEEEeCCeEEEEE
Confidence 112224556778777776 2 589999999887554210 1111 222233344555555554444444444
Q ss_pred ec
Q 011881 418 AD 419 (475)
Q Consensus 418 ~d 419 (475)
.|
T Consensus 461 ld 462 (464)
T 3v7d_B 461 LD 462 (464)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 45
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.05 E-value=0.27 Score=52.63 Aligned_cols=147 Identities=9% Similarity=0.046 Sum_probs=87.9
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCC-----CccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEe
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMS-----VGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFD 252 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p-----~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd 252 (475)
++.||+... .-+++||+.+++|+.....+ ..+. .+++.. ++.|++..- ...+.+||
T Consensus 460 ~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i-~~i~~d~~g~lWigt~----------~~Gl~~~~ 521 (781)
T 3v9f_A 460 NKKIWIGTH-------AGVFVIDLASKKVIHHYDTSNSQLLENFV-RSIAQDSEGRFWIGTF----------GGGVGIYT 521 (781)
T ss_dssp TSEEEEEET-------TEEEEEESSSSSCCEEECTTTSSCSCSCE-EEEEECTTCCEEEEES----------SSCEEEEC
T ss_pred CCCEEEEEC-------CceEEEeCCCCeEEecccCccccccccee-EEEEEcCCCCEEEEEc----------CCCEEEEe
Confidence 577877431 46899999999887764322 1111 122222 567777431 13578899
Q ss_pred CCCCCeEecCC---CCccccCCCCccccccccccceeeEEE-eCCEEEEeccCCCCCceeccce-EEEeCCCCceEEcCC
Q 011881 253 PTTDAWSEVPS---MPFSRAQGLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWPFFVDVGG-EIYDPDTNSWVEMPI 327 (475)
Q Consensus 253 ~~t~~W~~~~~---~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~-~~yd~~~~~W~~~~~ 327 (475)
+.+++++.... ++.... .++.. .+|.|++... .|. .+||++++++.....
T Consensus 522 ~~~~~~~~~~~~~~l~~~~i----------------~~i~~d~~g~lWi~T~---------~Glv~~~d~~~~~~~~~~~ 576 (781)
T 3v9f_A 522 PDMQLVRKFNQYEGFCSNTI----------------NQIYRSSKGQMWLATG---------EGLVCFPSARNFDYQVFQR 576 (781)
T ss_dssp TTCCEEEEECTTTTCSCSCE----------------EEEEECTTSCEEEEET---------TEEEEESCTTTCCCEEECG
T ss_pred CCCCeEEEccCCCCCCCCee----------------EEEEECCCCCEEEEEC---------CCceEEECCCCCcEEEccc
Confidence 99998887653 211100 22332 3678888432 355 789999999887653
Q ss_pred CCCCCCCCccCCCeEEEE-ECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 328 GMGEGWPARQAGTKLSVV-LDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 328 ~~~~~~p~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
..++|.... .+ ++. -+|.|++.+. +.+.+||+++.+++...
T Consensus 577 --~~gl~~~~i-~~-i~~d~~g~lW~~t~------~Gl~~~~~~~~~~~~~~ 618 (781)
T 3v9f_A 577 --KEGLPNTHI-RA-ISEDKNGNIWASTN------TGISCYITSKKCFYTYD 618 (781)
T ss_dssp --GGTCSCCCC-CE-EEECSSSCEEEECS------SCEEEEETTTTEEEEEC
T ss_pred --cCCCCCceE-EE-EEECCCCCEEEEcC------CceEEEECCCCceEEec
Confidence 122232222 12 333 3678888753 46999999999988764
No 46
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.00 E-value=0.39 Score=43.93 Aligned_cols=151 Identities=11% Similarity=-0.054 Sum_probs=89.1
Q ss_pred eeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEecc
Q 011881 221 KTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQS 300 (475)
Q Consensus 221 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG 300 (475)
+....++.||+..|.. ..+.++|++|++=..-- ++....+ .+++..+++||+...
T Consensus 59 GL~~~~~~Ly~stG~~---------g~v~~iD~~Tgkv~~~~-l~~~~Fg---------------eGit~~g~~Ly~ltw 113 (268)
T 3nok_A 59 GLVFHQGHFFESTGHQ---------GTLRQLSLESAQPVWME-RLGNIFA---------------EGLASDGERLYQLTW 113 (268)
T ss_dssp EEEEETTEEEEEETTT---------TEEEECCSSCSSCSEEE-ECTTCCE---------------EEEEECSSCEEEEES
T ss_pred eEEEECCEEEEEcCCC---------CEEEEEECCCCcEEeEE-CCCCcce---------------eEEEEeCCEEEEEEc
Confidence 4555689999999852 34999999998743322 3322222 567788999999754
Q ss_pred CCCCCceeccceEEEeCCCCceEE-cCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCC
Q 011881 301 LYSWPFFVDVGGEIYDPDTNSWVE-MPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIG 379 (475)
Q Consensus 301 ~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~ 379 (475)
.. .-+.+||+++.+=.. ++. . ..|.+ .+..+++||+..| .+.+..+|+++.+-..-
T Consensus 114 ~~-------~~v~V~D~~Tl~~~~ti~~-~-------~eGwG-Lt~Dg~~L~vSdG-----s~~l~~iDp~T~~v~~~-- 170 (268)
T 3nok_A 114 TE-------GLLFTWSGMPPQRERTTRY-S-------GEGWG-LCYWNGKLVRSDG-----GTMLTFHEPDGFALVGA-- 170 (268)
T ss_dssp SS-------CEEEEEETTTTEEEEEEEC-S-------SCCCC-EEEETTEEEEECS-----SSEEEEECTTTCCEEEE--
T ss_pred cC-------CEEEEEECCcCcEEEEEeC-C-------CceeE-EecCCCEEEEECC-----CCEEEEEcCCCCeEEEE--
Confidence 32 234899998876543 332 1 12233 5667788999876 25899999998764431
Q ss_pred cCccccCCCCC-CCeEEEEeCCeEEEEeecCCCCeeEEEecCCCC
Q 011881 380 KVPIRDFADSE-SPYLLSAFHGKLHVLTKDASRNISILRADPRDH 423 (475)
Q Consensus 380 ~~p~~~~~~~r-~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~~~ 423 (475)
++...-+.+. ..-.+...+|+||+ .-...+ .+...|+.+.
T Consensus 171 -I~V~~~g~~v~~lNeLe~~dG~lya-nvw~s~--~I~vIDp~TG 211 (268)
T 3nok_A 171 -VQVKLRGQPVELINELECANGVIYA-NIWHSS--DVLEIDPATG 211 (268)
T ss_dssp -EECEETTEECCCEEEEEEETTEEEE-EETTCS--EEEEECTTTC
T ss_pred -EEeCCCCcccccccccEEeCCEEEE-EECCCC--eEEEEeCCCC
Confidence 1111101110 11124445888885 322333 4677777643
No 47
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.83 E-value=0.46 Score=46.60 Aligned_cols=185 Identities=11% Similarity=0.063 Sum_probs=96.3
Q ss_pred EeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 177 AVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 177 ~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
..++..++.|+.++ .+.+||..+.+-... +........+...++.+++.|+. ...+.+||..++
T Consensus 140 ~~d~~~l~~g~~dg-----~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sg~~---------dg~i~vwd~~~~ 203 (435)
T 1p22_A 140 QYDDQKIVSGLRDN-----TIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSS---------DSTVRVWDVNTG 203 (435)
T ss_dssp ECCSSEEEEEESSS-----CEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEET---------TSCEEEEESSSC
T ss_pred EECCCEEEEEeCCC-----eEEEEeCCCCeEEEE--EcCCCCcEEEEEECCCEEEEEcC---------CCeEEEEECCCC
Confidence 34677777777543 688889877654332 11111222344457788888874 257899999887
Q ss_pred CeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCc
Q 011881 257 AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPAR 336 (475)
Q Consensus 257 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~ 336 (475)
+-... +...... ......++.+++.|+.++ ...+||..+.+-........ .
T Consensus 204 ~~~~~--~~~h~~~---------------v~~l~~~~~~l~s~s~dg-------~i~vwd~~~~~~~~~~~~~~-----~ 254 (435)
T 1p22_A 204 EMLNT--LIHHCEA---------------VLHLRFNNGMMVTCSKDR-------SIAVWDMASPTDITLRRVLV-----G 254 (435)
T ss_dssp CEEEE--ECCCCSC---------------EEEEECCTTEEEEEETTS-------CEEEEECSSSSCCEEEEEEC-----C
T ss_pred cEEEE--EcCCCCc---------------EEEEEEcCCEEEEeeCCC-------cEEEEeCCCCCCceeeeEec-----C
Confidence 64322 1111111 222334555666666543 23788887654321100000 0
Q ss_pred cCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEE
Q 011881 337 QAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISIL 416 (475)
Q Consensus 337 ~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~ 416 (475)
..+...++..++..++.|+. .+.+.+||..+.+-... +...........+++.+++.|+.++. +.
T Consensus 255 ~~~~v~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~--------~~~~~~~v~~~~~~~~~l~~g~~dg~---i~ 319 (435)
T 1p22_A 255 HRAAVNVVDFDDKYIVSASG----DRTIKVWNTSTCEFVRT--------LNGHKRGIACLQYRDRLVVSGSSDNT---IR 319 (435)
T ss_dssp CSSCEEEEEEETTEEEEEET----TSEEEEEETTTCCEEEE--------EECCSSCEEEEEEETTEEEEEETTSC---EE
T ss_pred CCCcEEEEEeCCCEEEEEeC----CCeEEEEECCcCcEEEE--------EcCCCCcEEEEEeCCCEEEEEeCCCe---EE
Confidence 11111133446666666663 35799999987653321 11111223344557777777775443 44
Q ss_pred EecCC
Q 011881 417 RADPR 421 (475)
Q Consensus 417 ~~d~~ 421 (475)
.+|+.
T Consensus 320 iwd~~ 324 (435)
T 1p22_A 320 LWDIE 324 (435)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 45554
No 48
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=95.70 E-value=1.2 Score=40.76 Aligned_cols=177 Identities=11% Similarity=-0.003 Sum_probs=87.7
Q ss_pred EEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEE
Q 011881 175 IGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVF 251 (475)
Q Consensus 175 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~y 251 (475)
.+..++.|++.+ .+.+..||+ +.+ |+.-.+ .....+++... ++++++.... ....+..+
T Consensus 43 ~~~pdG~ilvs~-------~~~V~~~d~-~G~~~W~~~~~--~~~~~~~~~~~~dG~~lv~~~~--------~~~~v~~v 104 (276)
T 3no2_A 43 AATKAGEILFSY-------SKGAKMITR-DGRELWNIAAP--AGCEMQTARILPDGNALVAWCG--------HPSTILEV 104 (276)
T ss_dssp EECTTSCEEEEC-------BSEEEEECT-TSCEEEEEECC--TTCEEEEEEECTTSCEEEEEES--------TTEEEEEE
T ss_pred EECCCCCEEEeC-------CCCEEEECC-CCCEEEEEcCC--CCccccccEECCCCCEEEEecC--------CCCEEEEE
Confidence 334577788743 246899999 443 765432 11122233333 6777766431 02467788
Q ss_pred eCCCCC-eEec--CCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCc--eEEcC
Q 011881 252 DPTTDA-WSEV--PSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNS--WVEMP 326 (475)
Q Consensus 252 d~~t~~-W~~~--~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~ 326 (475)
|+.-+. |+.- ...+.+.... .......+|.+++....+ ..+.+||++ ++ |+.-.
T Consensus 105 d~~Gk~l~~~~~~~~~~~~~~~~-------------~~v~~~~~G~~lv~~~~~-------~~v~~~d~~-G~~~w~~~~ 163 (276)
T 3no2_A 105 NMKGEVLSKTEFETGIERPHAQF-------------RQINKNKKGNYLVPLFAT-------SEVREIAPN-GQLLNSVKL 163 (276)
T ss_dssp CTTSCEEEEEEECCSCSSGGGSC-------------SCCEECTTSCEEEEETTT-------TEEEEECTT-SCEEEEEEC
T ss_pred eCCCCEEEEEeccCCCCcccccc-------------cCceECCCCCEEEEecCC-------CEEEEECCC-CCEEEEEEC
Confidence 874432 4432 1111111100 012234466666643322 124789987 44 66432
Q ss_pred CCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc--EEEcCCcCccccCCCCCCCeEEE-EeCCeEE
Q 011881 327 IGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT--WKVVIGKVPIRDFADSESPYLLS-AFHGKLH 403 (475)
Q Consensus 327 ~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~--W~~v~~~~p~~~~~~~r~~~~~~-~~~~~l~ 403 (475)
. . .| ++.....+|.++|.+.. ...+..+|+++.+ |+.-....+...+. ...++. ..+|.+|
T Consensus 164 ~-~---~~-----~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~~l~---~~~~~~~~~~G~i~ 227 (276)
T 3no2_A 164 S-G---TP-----FSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGVQLF---FVAQLFPLQNGGLY 227 (276)
T ss_dssp S-S---CC-----CEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSCCCS---EEEEEEECTTSCEE
T ss_pred C-C---Cc-----cceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCcccc---ccccceEcCCCCEE
Confidence 2 0 11 12234457888887653 2479999999654 76532111110111 112333 3488898
Q ss_pred EEe
Q 011881 404 VLT 406 (475)
Q Consensus 404 v~G 406 (475)
|..
T Consensus 228 v~~ 230 (276)
T 3no2_A 228 ICN 230 (276)
T ss_dssp EEE
T ss_pred EEe
Confidence 877
No 49
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=95.68 E-value=1.1 Score=40.14 Aligned_cols=185 Identities=12% Similarity=0.128 Sum_probs=93.3
Q ss_pred eCCEEEE-EcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 178 VDGCLYV-LGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 178 ~~~~lyv-~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
-++.||+ .... ...+.+||+.+........... ..-..++.. +++||+... ...+.+||+.+
T Consensus 33 ~~g~l~v~~~~~-----~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~----------~~~i~~~d~~~ 96 (270)
T 1rwi_B 33 SAGNVYVTSEGM-----YGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDF----------NNRVVTLAAGS 96 (270)
T ss_dssp TTCCEEEEECSS-----SCEEEEECC-----EECCCCSC-CSCCCEEECTTCCEEEEET----------TTEEEEECTTC
T ss_pred CCCCEEEEccCC-----CCcEEEecCCCcccceEeeCCc-CCcceeEECCCCCEEEEcC----------CCEEEEEeCCC
Confidence 3567998 5332 2478899988776554432111 111233433 578888754 14789999988
Q ss_pred CCeEecCCCCccccCCCCccccccccccceeeEEEe-CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCC
Q 011881 256 DAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY-MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWP 334 (475)
Q Consensus 256 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p 334 (475)
.....+........ .+++.. +|++|+..... ....+||..+........ ... .
T Consensus 97 ~~~~~~~~~~~~~p----------------~~i~~~~~g~l~v~~~~~-------~~i~~~~~~~~~~~~~~~-~~~--~ 150 (270)
T 1rwi_B 97 NNQTVLPFDGLNYP----------------EGLAVDTQGAVYVADRGN-------NRVVKLAAGSKTQTVLPF-TGL--N 150 (270)
T ss_dssp SCCEECCCCSCSSE----------------EEEEECTTCCEEEEEGGG-------TEEEEECTTCCSCEECCC-CSC--C
T ss_pred ceEeeeecCCcCCC----------------cceEECCCCCEEEEECCC-------CEEEEEECCCceeEeecc-ccC--C
Confidence 76554432110000 333333 67899864321 124778877665544322 110 1
Q ss_pred CccCCCeEEEE-ECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEe-CCeEEEEeecCCCC
Q 011881 335 ARQAGTKLSVV-LDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAF-HGKLHVLTKDASRN 412 (475)
Q Consensus 335 ~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~GG~~~~~ 412 (475)
.+ .. ++. -+|+||+.... .+.|.+||+....-..... ..+ ....+++.- +|.||+.... +..
T Consensus 151 ~p---~~-i~~~~~g~l~v~~~~----~~~i~~~~~~~~~~~~~~~----~~~---~~p~~i~~d~~g~l~v~~~~-~~~ 214 (270)
T 1rwi_B 151 DP---DG-VAVDNSGNVYVTDTD----NNRVVKLEAESNNQVVLPF----TDI---TAPWGIAVDEAGTVYVTEHN-TNQ 214 (270)
T ss_dssp SC---CC-EEECTTCCEEEEEGG----GTEEEEECTTTCCEEECCC----SSC---CSEEEEEECTTCCEEEEETT-TSC
T ss_pred Cc---ee-EEEeCCCCEEEEECC----CCEEEEEecCCCceEeecc----cCC---CCceEEEECCCCCEEEEECC-CCc
Confidence 11 11 333 36789987542 2579999998765443311 011 222344443 4678776533 223
Q ss_pred eeEEEecCCC
Q 011881 413 ISILRADPRD 422 (475)
Q Consensus 413 ~~v~~~d~~~ 422 (475)
+..+|+..
T Consensus 215 --v~~~~~~~ 222 (270)
T 1rwi_B 215 --VVKLLAGS 222 (270)
T ss_dssp --EEEECTTC
T ss_pred --EEEEcCCC
Confidence 55666654
No 50
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=95.61 E-value=0.91 Score=44.09 Aligned_cols=189 Identities=14% Similarity=0.069 Sum_probs=89.0
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
+..+|+.++.+ ..+.+||+.+.+....-+.. ..-..++.. +++.+++++.....- ......+.+||+.+.+
T Consensus 223 ~~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~-~~~dg~i~~~d~~~~~ 294 (433)
T 3bws_A 223 RDLVYCSNWIS-----EDISVIDRKTKLEIRKTDKI--GLPRGLLLSKDGKELYIAQFSASNQ-ESGGGRLGIYSMDKEK 294 (433)
T ss_dssp TTEEEEEETTT-----TEEEEEETTTTEEEEECCCC--SEEEEEEECTTSSEEEEEEEESCTT-CSCCEEEEEEETTTTE
T ss_pred CCEEEEEecCC-----CcEEEEECCCCcEEEEecCC--CCceEEEEcCCCCEEEEEECCCCcc-ccCCCeEEEEECCCCc
Confidence 45677776433 37899999887764432221 112223332 454444444322110 0013578999998875
Q ss_pred eEecCCCCccccCCCCccccccccccceeeEE-EeCC-EEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCC
Q 011881 258 WSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMG-RLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPA 335 (475)
Q Consensus 258 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~ 335 (475)
-......+. .- ..++ .-++ .+|+.++.++ ...+||+.+++-...-. .. .
T Consensus 295 ~~~~~~~~~--~~---------------~~~~~~~~g~~l~~~~~~~~-------~v~v~d~~~~~~~~~~~-~~----~ 345 (433)
T 3bws_A 295 LIDTIGPPG--NK---------------RHIVSGNTENKIYVSDMCCS-------KIEVYDLKEKKVQKSIP-VF----D 345 (433)
T ss_dssp EEEEEEEEE--CE---------------EEEEECSSTTEEEEEETTTT-------EEEEEETTTTEEEEEEE-CS----S
T ss_pred EEeeccCCC--Cc---------------ceEEECCCCCEEEEEecCCC-------EEEEEECCCCcEEEEec-CC----C
Confidence 433211111 00 1222 2234 6777655432 23789988765433211 10 0
Q ss_pred ccCCCeEEEE-ECCe-EEEEcCCCCC----------CCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEE-eCCeE
Q 011881 336 RQAGTKLSVV-LDGE-LYAFDPSSSL----------NSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSA-FHGKL 402 (475)
Q Consensus 336 ~~~~~~~~~~-~~~~-lyv~GG~~~~----------~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~-~~~~l 402 (475)
. -.. ++. .+++ ||+.+..... ....+++||+.+.+....-. .......++. -+++.
T Consensus 346 ~--~~~-~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~--------~~~~~~~~~~s~dg~~ 414 (433)
T 3bws_A 346 K--PNT-IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE--------AGNQPTGLDVSPDNRY 414 (433)
T ss_dssp S--EEE-EEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE--------CSSSEEEEEECTTSCE
T ss_pred C--CCe-EEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec--------CCCCCceEEEcCCCCE
Confidence 0 011 222 3454 5554332110 12489999998876554311 1111223332 35666
Q ss_pred EEEeecCCCCeeE
Q 011881 403 HVLTKDASRNISI 415 (475)
Q Consensus 403 ~v~GG~~~~~~~v 415 (475)
+++++.....+.+
T Consensus 415 l~~~~~~d~~i~v 427 (433)
T 3bws_A 415 LVISDFLDHQIRV 427 (433)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEECCCCeEEE
Confidence 6666654444333
No 51
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=95.59 E-value=0.0042 Score=59.37 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=37.3
Q ss_pred CCCCCCCCHHHHHHHhccCChhhhHHHHHhhhhhhhhcCChh
Q 011881 40 LRLIPSLPDELSIQILARVPRIFYLNLRAVSRKWKATVTSPE 81 (475)
Q Consensus 40 ~~~~~~LP~dl~~~iL~~lp~~~l~~l~~vck~W~~l~~s~~ 81 (475)
...|..||+|++.+||.+|+...+.+++.|||+|+.+..++.
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~ 47 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES 47 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCST
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCch
Confidence 456889999999999999999999999999999999976654
No 52
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=95.59 E-value=1.4 Score=40.61 Aligned_cols=148 Identities=15% Similarity=0.198 Sum_probs=74.4
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.+++.|+.+ ..+.+||..+.+-... +........++.+ ++.+++.|+. ...+.+||..+.
T Consensus 76 ~~~~l~s~~~d-----~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~ 139 (312)
T 4ery_A 76 DSNLLVSASDD-----KTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSF---------DESVRIWDVKTG 139 (312)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEECSSSSEEEEEET---------TSCEEEEETTTC
T ss_pred CCCEEEEECCC-----CEEEEEECCCCcEEEE--EcCCCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEECCCC
Confidence 45566666654 3688888887653321 1111111112222 4566677764 257889999876
Q ss_pred CeEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCC
Q 011881 257 AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPA 335 (475)
Q Consensus 257 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~ 335 (475)
+-... ++..... + .++. .-++++++.|+.++. ..+||..+.+-...-....
T Consensus 140 ~~~~~--~~~~~~~-------------v-~~~~~~~~~~~l~~~~~d~~-------i~~wd~~~~~~~~~~~~~~----- 191 (312)
T 4ery_A 140 KCLKT--LPAHSDP-------------V-SAVHFNRDGSLIVSSSYDGL-------CRIWDTASGQCLKTLIDDD----- 191 (312)
T ss_dssp CEEEE--ECCCSSC-------------E-EEEEECTTSSEEEEEETTSC-------EEEEETTTCCEEEEECCSS-----
T ss_pred EEEEE--ecCCCCc-------------E-EEEEEcCCCCEEEEEeCCCc-------EEEEECCCCceeeEEeccC-----
Confidence 53221 1111111 0 1222 235667777765532 3789988776533211000
Q ss_pred ccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcE
Q 011881 336 RQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTW 374 (475)
Q Consensus 336 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W 374 (475)
...-.......+++.++.|+.+ +.+.+||..+.+-
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~ 226 (312)
T 4ery_A 192 NPPVSFVKFSPNGKYILAATLD----NTLKLWDYSKGKC 226 (312)
T ss_dssp CCCEEEEEECTTSSEEEEEETT----TEEEEEETTTTEE
T ss_pred CCceEEEEECCCCCEEEEEcCC----CeEEEEECCCCcE
Confidence 0000111222356666766643 5799999987653
No 53
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=95.46 E-value=1.4 Score=39.90 Aligned_cols=172 Identities=11% Similarity=0.037 Sum_probs=89.6
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
++.||+.... ...+.+||+ +.+............-..++.. ++++|+.... ...+.+||+ +++
T Consensus 109 ~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~-~g~ 172 (299)
T 2z2n_A 109 NGDIWFTEMN-----GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ---------NNAIGRITE-SGD 172 (299)
T ss_dssp TSCEEEEETT-----TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT---------TTEEEEECT-TCC
T ss_pred CCCEEEEecC-----CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC---------CCEEEEEcC-CCc
Confidence 5788887532 247889998 6665543211111222233333 5788886521 257899999 777
Q ss_pred eEecCCCCccccCCCCccccccccccceeeEEE-eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCc
Q 011881 258 WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPAR 336 (475)
Q Consensus 258 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~ 336 (475)
...+. ++..... ..+++. -+++||+..... .+..+||+ +++...+..+. .
T Consensus 173 ~~~~~-~~~~~~~--------------~~~i~~~~~g~l~v~~~~~-------~~i~~~~~-~g~~~~~~~~~------~ 223 (299)
T 2z2n_A 173 ITEFK-IPTPASG--------------PVGITKGNDDALWFVEIIG-------NKIGRITT-SGEITEFKIPT------P 223 (299)
T ss_dssp EEEEE-CSSTTCC--------------EEEEEECTTSSEEEEETTT-------TEEEEECT-TCCEEEEECSS------T
T ss_pred EEEee-CCCCCCc--------------ceeEEECCCCCEEEEccCC-------ceEEEECC-CCcEEEEECCC------C
Confidence 66541 1111111 033333 357888854211 23488999 77777653211 1
Q ss_pred cCCCeEEEE-ECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEe
Q 011881 337 QAGTKLSVV-LDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLT 406 (475)
Q Consensus 337 ~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~G 406 (475)
......++. -+|+||+.... .+.+.+||+ +.+...+. .+. ......+++.-+|+||+..
T Consensus 224 ~~~~~~i~~~~~g~l~v~~~~----~~~i~~~d~-~g~~~~~~--~~~----~~~~~~~i~~~~g~l~v~~ 283 (299)
T 2z2n_A 224 NARPHAITAGAGIDLWFTEWG----ANKIGRLTS-NNIIEEYP--IQI----KSAEPHGICFDGETIWFAM 283 (299)
T ss_dssp TCCEEEEEECSTTCEEEEETT----TTEEEEEET-TTEEEEEE--CSS----SSCCEEEEEECSSCEEEEE
T ss_pred CCCceeEEECCCCCEEEeccC----CceEEEECC-CCceEEEe--CCC----CCCccceEEecCCCEEEEe
Confidence 111111333 36789987521 257999999 45544432 111 0112234444667787754
No 54
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=95.36 E-value=1.3 Score=40.93 Aligned_cols=173 Identities=9% Similarity=-0.013 Sum_probs=87.6
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++..++.|+.+ ..+.+||..+.+....-.... .......+ +++.++.|+. ...+.+||..+.
T Consensus 152 ~~~~l~~~~~d-----g~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~---------dg~i~~~d~~~~ 215 (337)
T 1gxr_A 152 DSKVCFSCCSD-----GNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGL---------DNTVRSWDLREG 215 (337)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEET---------TSEEEEEETTTT
T ss_pred CCCEEEEEeCC-----CcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEec---------CCcEEEEECCCC
Confidence 45566666543 358889988876443211111 11222222 5666666663 257899999877
Q ss_pred CeEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCC
Q 011881 257 AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPA 335 (475)
Q Consensus 257 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~ 335 (475)
+-...-..+.+. .+++ .-+++++++|+.++ ....||..+.+=..+...
T Consensus 216 ~~~~~~~~~~~v-----------------~~~~~s~~~~~l~~~~~~~-------~i~~~~~~~~~~~~~~~~------- 264 (337)
T 1gxr_A 216 RQLQQHDFTSQI-----------------FSLGYCPTGEWLAVGMESS-------NVEVLHVNKPDKYQLHLH------- 264 (337)
T ss_dssp EEEEEEECSSCE-----------------EEEEECTTSSEEEEEETTS-------CEEEEETTSSCEEEECCC-------
T ss_pred ceEeeecCCCce-----------------EEEEECCCCCEEEEEcCCC-------cEEEEECCCCCeEEEcCC-------
Confidence 533221111110 2222 23566666665443 237888887664433321
Q ss_pred ccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEE-eCCeEEEEeecCC
Q 011881 336 RQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSA-FHGKLHVLTKDAS 410 (475)
Q Consensus 336 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~-~~~~l~v~GG~~~ 410 (475)
...-.......++++++.++. .+.+.+||..+.+-.... .......++.. -+++.++.|+..+
T Consensus 265 ~~~v~~~~~~~~~~~l~~~~~----dg~i~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 265 ESCVLSLKFAYCGKWFVSTGK----DNLLNAWRTPYGASIFQS--------KESSSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEET----TSEEEEEETTTCCEEEEE--------ECSSCEEEEEECTTSCEEEEEETTS
T ss_pred ccceeEEEECCCCCEEEEecC----CCcEEEEECCCCeEEEEe--------cCCCcEEEEEECCCCCEEEEecCCC
Confidence 001111122235677777764 357999999887644321 11111223332 3567777776543
No 55
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=95.26 E-value=1 Score=42.39 Aligned_cols=64 Identities=13% Similarity=0.167 Sum_probs=39.5
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--C--CEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--N--DKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
+.+++.|+.++ .+.+||..+.+|..+..+.........+.+ + +.+++.|+. ...+.+||..+
T Consensus 69 ~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~~i~v~d~~~ 134 (379)
T 3jrp_A 69 GTILASCSYDG-----KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS---------DGKVSVVEFKE 134 (379)
T ss_dssp CSEEEEEETTS-----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET---------TSEEEEEECCT
T ss_pred CCEEEEeccCC-----EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC---------CCcEEEEecCC
Confidence 55666666543 688889999888766544332222333333 3 566777764 25788999887
Q ss_pred CC
Q 011881 256 DA 257 (475)
Q Consensus 256 ~~ 257 (475)
..
T Consensus 135 ~~ 136 (379)
T 3jrp_A 135 NG 136 (379)
T ss_dssp TS
T ss_pred CC
Confidence 63
No 56
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.26 E-value=1.5 Score=41.45 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=46.7
Q ss_pred eEEEeCCCCceEEcCCCCCCCCCCccCCCeEEE-EECCe-EEEEcCCCCCCCCeEEEEeC--CCCcEEEcCCcCccccCC
Q 011881 312 GEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSV-VLDGE-LYAFDPSSSLNSAKIKVYDQ--KEDTWKVVIGKVPIRDFA 387 (475)
Q Consensus 312 ~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~-~~~~~-lyv~GG~~~~~~~~v~~yd~--~~~~W~~v~~~~p~~~~~ 387 (475)
..+||..+++...+.. ... .+....+...++ .-+|+ ||+.... ..+.+.+|+. .+++++.+.. .+.
T Consensus 235 v~v~~~~~g~~~~~~~-~~~-~~~~~~~~~~i~~spdg~~l~v~~~~---~~~~i~v~~~~~~~g~~~~~~~-~~~---- 304 (361)
T 3scy_A 235 VIAFRYADGMLDEIQT-VAA-DTVNAQGSGDIHLSPDGKYLYASNRL---KADGVAIFKVDETNGTLTKVGY-QLT---- 304 (361)
T ss_dssp EEEEEEETTEEEEEEE-EES-CSSCCCCEEEEEECTTSSEEEEEECS---SSCEEEEEEECTTTCCEEEEEE-EEC----
T ss_pred EEEEEecCCceEEeEE-Eec-CCCCCCCcccEEECCCCCEEEEECCC---CCCEEEEEEEcCCCCcEEEeeE-ecC----
Confidence 3678887777655432 100 011111111122 23555 6665431 0246777766 4677766532 221
Q ss_pred CCCCCeEEE-EeCCeEEEEeecCCCCeeEEEecCC
Q 011881 388 DSESPYLLS-AFHGKLHVLTKDASRNISILRADPR 421 (475)
Q Consensus 388 ~~r~~~~~~-~~~~~l~v~GG~~~~~~~v~~~d~~ 421 (475)
......++ .-+|+.+++++...+.+.+..+|+.
T Consensus 305 -g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~ 338 (361)
T 3scy_A 305 -GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQA 338 (361)
T ss_dssp -SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTT
T ss_pred -CCCCceEEECCCCCEEEEEECCCCCEEEEEEECC
Confidence 11112333 3367756666655566666666654
No 57
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.25 E-value=0.51 Score=50.63 Aligned_cols=150 Identities=12% Similarity=0.145 Sum_probs=85.7
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCC--C--Cccce-eeeEE-ECCEEEEEeceecCCCCcccCCeEEEEe
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSM--S--VGRAY-CKTGI-LNDKLYVVGGVSRARGGLTPLQSAEVFD 252 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~--p--~~R~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd 252 (475)
++.||+... .-+++||+.+++|+..... + .+... .++.. -++.|++... ..+.+||
T Consensus 462 ~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-----------~Gl~~~~ 523 (795)
T 4a2l_A 462 EGNLWLGTL-------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-----------EGLSVFK 523 (795)
T ss_dssp SSCEEEEES-------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-----------SCEEEEE
T ss_pred CCCEEEEec-------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-----------CceEEEe
Confidence 567776532 3589999999999887533 1 11111 12222 2567877532 3578899
Q ss_pred CCCCCeEecCCCC--ccccCCCCccccccccccceeeEEE-eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCC
Q 011881 253 PTTDAWSEVPSMP--FSRAQGLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGM 329 (475)
Q Consensus 253 ~~t~~W~~~~~~p--~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 329 (475)
+.++++ ...... ..... . ...+++. .+|.|++... .|..+||+++++++....
T Consensus 524 ~~~~~~-~~~~~~~~~~l~~----~--------~i~~i~~d~~g~lWigT~---------~Gl~~~d~~~~~~~~~~~-- 579 (795)
T 4a2l_A 524 QEGLDI-QKASILPVSNVTK----L--------FTNCIYEASNGIIWVGTR---------EGFYCFNEKDKQIKRYNT-- 579 (795)
T ss_dssp EETTEE-EECCCSCSCGGGG----S--------CEEEEEECTTSCEEEEES---------SCEEEEETTTTEEEEECG--
T ss_pred CCCCeE-EEecCCCCCCCCC----C--------eeEEEEECCCCCEEEEeC---------CCceeECCCCCcEEEeCC--
Confidence 988887 433110 00000 0 0023332 3678887432 244899999999987643
Q ss_pred CCCCCCccCCCeEEEE-ECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 330 GEGWPARQAGTKLSVV-LDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 330 ~~~~p~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
..+.|.... .+++. -+|.|++.+. +.+.+||+++++++...
T Consensus 580 ~~gl~~~~i--~~i~~d~~g~lWi~t~------~Gl~~~~~~~~~~~~~~ 621 (795)
T 4a2l_A 580 TNGLPNNVV--YGILEDSFGRLWLSTN------RGISCFNPETEKFRNFT 621 (795)
T ss_dssp GGTCSCSCE--EEEEECTTSCEEEEET------TEEEEEETTTTEEEEEC
T ss_pred CCCCchhhe--EEEEECCCCCEEEEcC------CceEEEcCCCCcEEEcC
Confidence 112232221 11222 2578888763 57999999999988764
No 58
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.24 E-value=0.43 Score=45.04 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=36.4
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCcccee-eeEEE-CC-EEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYC-KTGIL-ND-KLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
-+++||+.+... ....+++||+.+.+++.+.......... .++.. ++ .||+.+.. ...+.+||..
T Consensus 49 pdg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~---------~~~v~v~~~~ 116 (347)
T 3hfq_A 49 AKDCLYSVDKED---DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH---------KGTAEVMKIA 116 (347)
T ss_dssp TTCEEEEEEEET---TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT---------TTEEEEEEEC
T ss_pred cCCeEEEEEecC---CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC---------CCEEEEEEeC
Confidence 367787775321 1357899999888877665422111111 23332 44 57776531 2467788874
No 59
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=95.17 E-value=0.36 Score=42.06 Aligned_cols=153 Identities=11% Similarity=0.072 Sum_probs=79.2
Q ss_pred EEEeCCEEEEEcCCCCCCCcceEEEEeCCCC--cEEe--C----CCCCCccceeeeEEE--CCEEEEEeceecCCCCccc
Q 011881 175 IGAVDGCLYVLGGFSRTSAMRCVRRYDPIAN--TWNE--A----TSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTP 244 (475)
Q Consensus 175 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~--~W~~--~----~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 244 (475)
++.+++++|+|=| +.+|+++.... .... + +.+|.. .. ++... ++++|+|-|
T Consensus 12 i~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~-ID-Aa~~~~~~~~~yfFkG---------- 72 (195)
T 1itv_A 12 IAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRK-LD-SVFEEPLSKKLFFFSG---------- 72 (195)
T ss_dssp EEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS-CS-EEEECTTTCCEEEEET----------
T ss_pred EEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhhhccCCCCCC-cc-EEEEECCCCeEEEEeC----------
Confidence 4557999999966 47788877552 2211 1 234432 11 22222 689999987
Q ss_pred CCeEEEEeCCCCCeEecCCCCccccC-CCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceE
Q 011881 245 LQSAEVFDPTTDAWSEVPSMPFSRAQ-GLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWV 323 (475)
Q Consensus 245 ~~~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 323 (475)
+..++|+..+- . + |.+... +.+. ....+=+++...++++|+|-|. .-++||..+++=.
T Consensus 73 -~~yw~~~~~~~--~--~--Pk~i~~~G~p~-----~~~~iDAA~~~~~g~~yfFkg~---------~ywr~d~~~~~~~ 131 (195)
T 1itv_A 73 -RQVWVYTGASV--L--G--PRRLDKLGLGA-----DVAQVTGALRSGRGKMLLFSGR---------RLWRFDVKAQMVD 131 (195)
T ss_dssp -TEEEEEETTEE--E--E--EEEGGGGTCCT-----TCCCCCEEEECSTTEEEEEETT---------EEEEEETTTTEEC
T ss_pred -CEEEEEcCCcc--C--C--CEEeeecccCC-----CccceeEEEEcCCCeEEEEeCC---------EEEEEeCCccccc
Confidence 46778875421 1 1 211111 1110 0001113333347899998652 2378998765321
Q ss_pred E-cCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 324 E-MPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 324 ~-~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
. -+..+...||.-.....++...+|.+|++-| +..+.||..+..
T Consensus 132 ~gyPr~i~~~w~Gvp~~idaa~~~~g~~Yffkg------~~y~~~~~~~~~ 176 (195)
T 1itv_A 132 PRSASEVDRMFPGVPLDTHDVFQFREKAYFCQD------RFYWRVSSRSEL 176 (195)
T ss_dssp GGGCEEHHHHSTTSCSSCSEEEEETTEEEEEET------TEEEEEECCTTC
T ss_pred CCCccChhhcCCCCCCCCCEEEEeCCeEEEEeC------CEEEEEECCccE
Confidence 1 0000000111111122235667899999977 578999987764
No 60
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=95.16 E-value=0.14 Score=45.77 Aligned_cols=156 Identities=13% Similarity=0.140 Sum_probs=78.5
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeC---------------CCCcEEeCCCCCCccceeeeEE--ECCEEEEEeceecCCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDP---------------IANTWNEATSMSVGRAYCKTGI--LNDKLYVVGGVSRARG 240 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~---------------~t~~W~~~~~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~ 240 (475)
.+|++|+|-| ..+|+++. .+..|..||+-+......-++. .++++|+|-|
T Consensus 12 ~~ge~~fFk~-------~~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg------ 78 (225)
T 3oyo_A 12 SEYEVYFFAK-------NKYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSG------ 78 (225)
T ss_dssp STTEEEEEET-------TEEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEET------
T ss_pred CCCEEEEEEC-------CEEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcC------
Confidence 4789999965 35677761 1233444443222222333333 5899999987
Q ss_pred CcccCCeEEEEeCCCC--CeEecCCCCccccCCCCcccccc--ccccceeeEEE--eCCEEEEeccCCCCCceeccceEE
Q 011881 241 GLTPLQSAEVFDPTTD--AWSEVPSMPFSRAQGLPNAFFAD--MLKPIATGMTS--YMGRLCVPQSLYSWPFFVDVGGEI 314 (475)
Q Consensus 241 ~~~~~~~~~~yd~~t~--~W~~~~~~p~~r~~~~~~~~~~~--~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~ 314 (475)
+..++||..++ .-..++. |.......++ +-. ....| -++.. .++++|+|-|. .-++
T Consensus 79 -----~~~W~~d~~~~t~~~~~~~g-P~~I~~~wp~--LP~~~~~~~I-DAA~~~~~~gk~yfFkG~---------~yw~ 140 (225)
T 3oyo_A 79 -----NHSAYIDYAPGTTNDKILVG-PTTIAEMFPV--LNNTVFEDSI-DSAFRSTKGKEVYLFKGN---------KYVR 140 (225)
T ss_dssp -----TEEEEEECCTTSSCCEEEEE-EEEHHHHCGG--GTTSTTTSCC-CEEEECSSTTEEEEEETT---------EEEE
T ss_pred -----CEEEEEecccccCCCceecC-chhhhhcCCC--CCCccccccc-ceEEEECCCCcEEEEeCC---------eEEE
Confidence 46788876432 1122111 1111100000 000 00000 23333 37999998763 2388
Q ss_pred EeCCCCceEEcCCCCCCCCCCc-----cCCCeEEEE--ECCeEEEEcCCCCCCCCeEEEEeCC
Q 011881 315 YDPDTNSWVEMPIGMGEGWPAR-----QAGTKLSVV--LDGELYAFDPSSSLNSAKIKVYDQK 370 (475)
Q Consensus 315 yd~~~~~W~~~~~~~~~~~p~~-----~~~~~~~~~--~~~~lyv~GG~~~~~~~~v~~yd~~ 370 (475)
||..+++-..-+..+...+|.. .....++.. .++++|++-| +..|.||..
T Consensus 141 ~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG------~~ywr~d~~ 197 (225)
T 3oyo_A 141 IAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG------QNYVRIDFT 197 (225)
T ss_dssp EETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET------TEEEEEECC
T ss_pred EECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC------CEEEEEeCC
Confidence 9977766543111111123322 112222444 3789999977 589999998
No 61
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=95.09 E-value=1.2 Score=40.88 Aligned_cols=156 Identities=17% Similarity=0.056 Sum_probs=87.9
Q ss_pred eeeEEEC-CEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEe
Q 011881 220 CKTGILN-DKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVP 298 (475)
Q Consensus 220 ~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~ 298 (475)
+.++... +.||+..|.. ..+.+.++|+.+++=...-+++..... .+++..+++||+.
T Consensus 24 ~Gl~~~~dg~Lyvstg~~-------~~s~v~~iD~~tg~v~~~i~l~~~~fg---------------eGi~~~g~~lyv~ 81 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLY-------GRSSVRQVALQTGKVENIHKMDDSYFG---------------EGLTLLNEKLYQV 81 (266)
T ss_dssp EEEEECSTTEEEEEECST-------TTCEEEEEETTTCCEEEEEECCTTCCE---------------EEEEEETTEEEEE
T ss_pred ccEEEeCCCeEEEECCCC-------CCCEEEEEECCCCCEEEEEecCCCcce---------------EEEEEeCCEEEEE
Confidence 4555554 8999987731 136899999999875443223222122 5667778999996
Q ss_pred ccCCCCCceeccceEEEeCCCCceE-EcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEc
Q 011881 299 QSLYSWPFFVDVGGEIYDPDTNSWV-EMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVV 377 (475)
Q Consensus 299 GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 377 (475)
.-.. ..+.+||+++.+=. +++.+ . | .+.+ .+.-++++|+..| .+.+.++|+++.+=..-
T Consensus 82 t~~~-------~~v~viD~~t~~v~~~i~~g--~--~---~g~g-lt~Dg~~l~vs~g-----s~~l~viD~~t~~v~~~ 141 (266)
T 2iwa_A 82 VWLK-------NIGFIYDRRTLSNIKNFTHQ--M--K---DGWG-LATDGKILYGSDG-----TSILYEIDPHTFKLIKK 141 (266)
T ss_dssp ETTC-------SEEEEEETTTTEEEEEEECC--S--S---SCCE-EEECSSSEEEECS-----SSEEEEECTTTCCEEEE
T ss_pred EecC-------CEEEEEECCCCcEEEEEECC--C--C---CeEE-EEECCCEEEEECC-----CCeEEEEECCCCcEEEE
Confidence 5322 23489999876432 23321 0 1 2222 3445667998765 36899999998653321
Q ss_pred CCcCccccCCCC-CCCeEEEEeCCeEEEEeecCCCCeeEEEecCCCC
Q 011881 378 IGKVPIRDFADS-ESPYLLSAFHGKLHVLTKDASRNISILRADPRDH 423 (475)
Q Consensus 378 ~~~~p~~~~~~~-r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~~~ 423 (475)
++.+.-+.+ +....+...+++||+--.. .+ .+...|+.+.
T Consensus 142 ---I~Vg~~~~p~~~~nele~~dg~lyvn~~~-~~--~V~vID~~tg 182 (266)
T 2iwa_A 142 ---HNVKYNGHRVIRLNELEYINGEVWANIWQ-TD--CIARISAKDG 182 (266)
T ss_dssp ---EECEETTEECCCEEEEEEETTEEEEEETT-SS--EEEEEETTTC
T ss_pred ---EEECCCCcccccceeEEEECCEEEEecCC-CC--eEEEEECCCC
Confidence 111111111 1122444458888865422 23 3667777643
No 62
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.09 E-value=1.3 Score=43.16 Aligned_cols=158 Identities=9% Similarity=-0.086 Sum_probs=83.4
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
..|++.+..++ ...++.+|+.+.+...+..-.. ......+ +++.+++++.. + ....++.+|..+.+
T Consensus 235 ~~la~~~~~~g---~~~i~~~d~~~~~~~~l~~~~~---~~~~~~~spdg~~l~~~s~~---~---g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 235 SKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRS---NNTEPTWFPDSQNLAFTSDQ---A---GRPQVYKVNINGGA 302 (415)
T ss_dssp SEEEEEECTTS---SCEEEEEETTTCCEEECCCCSS---CEEEEEECTTSSEEEEEECT---T---SSCEEEEEETTSSC
T ss_pred CEEEEEEecCC---CceEEEEECCCCCEEeCcCCCC---cccceEECCCCCEEEEEECC---C---CCcEEEEEECCCCC
Confidence 34554543322 3579999999988776654321 1122222 55544444321 1 13578999998877
Q ss_pred eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCcc
Q 011881 258 WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQ 337 (475)
Q Consensus 258 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~ 337 (475)
-..+...... .. .....-+|+..++++.+... .....+|+.+++...+... .
T Consensus 303 ~~~l~~~~~~-~~---------------~~~~spdG~~l~~~~~~~g~----~~i~~~d~~~~~~~~l~~~-------~- 354 (415)
T 2hqs_A 303 PQRITWEGSQ-NQ---------------DADVSSDGKFMVMVSSNGGQ----QHIAKQDLATGGVQVLSST-------F- 354 (415)
T ss_dssp CEECCCSSSE-EE---------------EEEECTTSSEEEEEEECSSC----EEEEEEETTTCCEEECCCS-------S-
T ss_pred EEEEecCCCc-cc---------------CeEECCCCCEEEEEECcCCc----eEEEEEECCCCCEEEecCC-------C-
Confidence 5554321110 00 12223456544444332110 2237899999888766531 1
Q ss_pred CCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 338 AGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 338 ~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
.-......-+++.+++++... ....++.+|++.+....+.
T Consensus 355 ~~~~~~~spdg~~l~~~s~~~-~~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 355 LDETPSLAPNGTMVIYSSSQG-MGSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp SCEEEEECTTSSEEEEEEEET-TEEEEEEEETTSCCEEECC
T ss_pred CcCCeEEcCCCCEEEEEEcCC-CccEEEEEECCCCcEEEee
Confidence 111112334677666655321 1237999999888777764
No 63
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.08 E-value=1.7 Score=41.08 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCcc-ceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGR-AYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
+..||+.+..+.....-.+|.+|..+.+.+.+...+..- .-...+.-+..||+.... ...+.+||..++
T Consensus 61 g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~---------~~~v~~~~~~~~ 130 (361)
T 3scy_A 61 GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYS---------GGSITVFPIGQD 130 (361)
T ss_dssp SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETT---------TTEEEEEEBCTT
T ss_pred CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECC---------CCEEEEEEeCCC
Confidence 345777654321222334566677667777765443222 222233333456665431 257888887654
No 64
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=95.06 E-value=0.45 Score=44.15 Aligned_cols=184 Identities=15% Similarity=0.102 Sum_probs=90.4
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++..++.|+.+ ..+.+||..+.+......+...........+ +++.++.|+. ...+.+||..+.
T Consensus 108 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~v~~~d~~~~ 173 (337)
T 1gxr_A 108 DGCTLIVGGEA-----STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS---------DGNIAVWDLHNQ 173 (337)
T ss_dssp TSSEEEEEESS-----SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET---------TSCEEEEETTTT
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC---------CCcEEEEeCCCC
Confidence 45556666543 3788999988875443332222222222222 5666666663 246889999887
Q ss_pred CeEecCCCCccccCCCCccccccccccceeeEEE-eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCC
Q 011881 257 AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPA 335 (475)
Q Consensus 257 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~ 335 (475)
+....-... ... ..++.. -+++.++.++.++ ...+||+.+.+-...-. .. .
T Consensus 174 ~~~~~~~~~--~~~--------------i~~~~~~~~~~~l~~~~~dg-------~i~~~d~~~~~~~~~~~-~~----~ 225 (337)
T 1gxr_A 174 TLVRQFQGH--TDG--------------ASCIDISNDGTKLWTGGLDN-------TVRSWDLREGRQLQQHD-FT----S 225 (337)
T ss_dssp EEEEEECCC--SSC--------------EEEEEECTTSSEEEEEETTS-------EEEEEETTTTEEEEEEE-CS----S
T ss_pred ceeeeeecc--cCc--------------eEEEEECCCCCEEEEEecCC-------cEEEEECCCCceEeeec-CC----C
Confidence 543221111 111 022222 2566666665443 23788988765433211 10 1
Q ss_pred ccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEE-eCCeEEEEeecCCCCee
Q 011881 336 RQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSA-FHGKLHVLTKDASRNIS 414 (475)
Q Consensus 336 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~-~~~~l~v~GG~~~~~~~ 414 (475)
.. .......+++++++|+.+ +.+.+||..+.+=..+.. .......+.. -++++++.|+..+ .
T Consensus 226 ~v--~~~~~s~~~~~l~~~~~~----~~i~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg---~ 288 (337)
T 1gxr_A 226 QI--FSLGYCPTGEWLAVGMES----SNVEVLHVNKPDKYQLHL--------HESCVLSLKFAYCGKWFVSTGKDN---L 288 (337)
T ss_dssp CE--EEEEECTTSSEEEEEETT----SCEEEEETTSSCEEEECC--------CSSCEEEEEECTTSSEEEEEETTS---E
T ss_pred ce--EEEEECCCCCEEEEEcCC----CcEEEEECCCCCeEEEcC--------CccceeEEEECCCCCEEEEecCCC---c
Confidence 11 111222366777777643 579999998765433321 1111122332 2567777776533 2
Q ss_pred EEEecCC
Q 011881 415 ILRADPR 421 (475)
Q Consensus 415 v~~~d~~ 421 (475)
+..+|+.
T Consensus 289 i~~~~~~ 295 (337)
T 1gxr_A 289 LNAWRTP 295 (337)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 4445544
No 65
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=94.95 E-value=2.4 Score=39.53 Aligned_cols=150 Identities=11% Similarity=0.025 Sum_probs=77.2
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.+|+.+... ...+++||+.+.+-...-+.. ...-..++.. +..+|+... ...+.+||+.+.
T Consensus 152 g~~l~~~~~~~----~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~----------~~~i~~~d~~~~ 216 (353)
T 3vgz_A 152 TNTVYISGIGK----ESVIWVVDGGNIKLKTAIQNT-GKMSTGLALDSEGKRLYTTNA----------DGELITIDTADN 216 (353)
T ss_dssp TTEEEEEEESS----SCEEEEEETTTTEEEEEECCC-CTTCCCCEEETTTTEEEEECT----------TSEEEEEETTTT
T ss_pred CCEEEEEecCC----CceEEEEcCCCCceEEEecCC-CCccceEEECCCCCEEEEEcC----------CCeEEEEECCCC
Confidence 56688776221 246999999887644322211 1111223332 456777643 257889999887
Q ss_pred CeEecCCCCc--cccCCCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCC
Q 011881 257 AWSEVPSMPF--SRAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEG 332 (475)
Q Consensus 257 ~W~~~~~~p~--~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~ 332 (475)
+-...-..+. +... ..+++.. ++.+|+..... ....+||+.+++....-. ..
T Consensus 217 ~~~~~~~~~~~~~~~~--------------~~~~~~s~dg~~l~~~~~~~-------~~v~~~d~~~~~~~~~~~-~~-- 272 (353)
T 3vgz_A 217 KILSRKKLLDDGKEHF--------------FINISLDTARQRAFITDSKA-------AEVLVVDTRNGNILAKVA-AP-- 272 (353)
T ss_dssp EEEEEEECCCSSSCCC--------------EEEEEEETTTTEEEEEESSS-------SEEEEEETTTCCEEEEEE-CS--
T ss_pred eEEEEEEcCCCCCCcc--------------cceEEECCCCCEEEEEeCCC-------CEEEEEECCCCcEEEEEE-cC--
Confidence 5332211111 1111 0223322 44577754321 223789998887644322 11
Q ss_pred CCCccCCCeEEEEECC-eEEEEcCCCCCCCCeEEEEeCCCCcEEE
Q 011881 333 WPARQAGTKLSVVLDG-ELYAFDPSSSLNSAKIKVYDQKEDTWKV 376 (475)
Q Consensus 333 ~p~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 376 (475)
.+ ...+..-++ .+|+.+.. .+.+.+||+.+.+...
T Consensus 273 --~~---~~~~~s~dg~~l~v~~~~----~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 273 --ES---LAVLFNPARNEAYVTHRQ----AGKVSVIDAKSYKVVK 308 (353)
T ss_dssp --SC---CCEEEETTTTEEEEEETT----TTEEEEEETTTTEEEE
T ss_pred --CC---ceEEECCCCCEEEEEECC----CCeEEEEECCCCeEEE
Confidence 11 111233344 47877642 3689999998876554
No 66
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=94.92 E-value=0.78 Score=46.85 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=34.8
Q ss_pred EECCe-EEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEe-CCeEEEEeecCCCCeeEEEecC
Q 011881 345 VLDGE-LYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAF-HGKLHVLTKDASRNISILRADP 420 (475)
Q Consensus 345 ~~~~~-lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~GG~~~~~~~v~~~d~ 420 (475)
.-+++ +|+.+. ..+.|.++|.++++-... ++.+..|.+........- ++.+|+.+....+.+.++..|.
T Consensus 332 spdg~~l~va~~----~~~~v~v~D~~tg~l~~~---i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 332 DSSHRYFMTAAN----NSNKVAVIDSKDRRLSAL---VDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp CTTSCEEEEEEG----GGTEEEEEETTTTEEEEE---EECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCCCEEEEEec----CCCeEEEEECCCCeEEEe---eccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCC
Confidence 34565 555432 236899999998864432 222223333222232222 3677776654445555554443
No 67
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=94.89 E-value=0.72 Score=43.53 Aligned_cols=72 Identities=6% Similarity=0.035 Sum_probs=42.9
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--C--CEEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--N--DKLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
++.+++.|+.++ .+.+||....+++.+..+........++.+ + +.+++.|+. ...+.+||..
T Consensus 22 ~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---------dg~v~iwd~~ 87 (379)
T 3jrp_A 22 YGKRLATCSSDK-----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY---------DGKVLIWKEE 87 (379)
T ss_dssp SSSEEEEEETTS-----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET---------TSCEEEEEEE
T ss_pred CCCEEEEEECCC-----cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc---------CCEEEEEEcC
Confidence 455666666543 577788776666655444322222233333 2 566777764 2478999999
Q ss_pred CCCeEecCCC
Q 011881 255 TDAWSEVPSM 264 (475)
Q Consensus 255 t~~W~~~~~~ 264 (475)
+++|..+..+
T Consensus 88 ~~~~~~~~~~ 97 (379)
T 3jrp_A 88 NGRWSQIAVH 97 (379)
T ss_dssp TTEEEEEEEE
T ss_pred CCceeEeeee
Confidence 9887765433
No 68
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=94.72 E-value=2.4 Score=38.43 Aligned_cols=180 Identities=15% Similarity=0.098 Sum_probs=92.2
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCc-cceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVG-RAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.||+.... ...+.+||+. .+..... ++.. ..-..++.. +++||+.... ...+.+||+ ++
T Consensus 114 ~g~l~v~~~~-----~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~---------~~~i~~~~~-~g 176 (300)
T 2qc5_A 114 NGDIWFTQLN-----GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQ---------NNSIGRITN-TG 176 (300)
T ss_dssp TTCEEEEETT-----TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT---------TTEEEEECT-TC
T ss_pred CCCEEEEccC-----CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEecC---------CCeEEEECC-CC
Confidence 6788887532 2478899987 6555432 1211 122233332 5778886531 257899998 66
Q ss_pred CeEecCCCCccccCCCCccccccccccceeeEEE-eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCC
Q 011881 257 AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPA 335 (475)
Q Consensus 257 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~ 335 (475)
+...+. ++..... + .+++. -++.||+..... ....+||+ ++++.....+..
T Consensus 177 ~~~~~~-~~~~~~~--~------------~~i~~d~~g~l~v~~~~~-------~~i~~~~~-~g~~~~~~~~~~----- 228 (300)
T 2qc5_A 177 KLEEYP-LPTNAAA--P------------VGITSGNDGALWFVEIMG-------NKIGRITT-TGEISEYDIPTP----- 228 (300)
T ss_dssp CEEEEE-CSSTTCC--E------------EEEEECTTSSEEEEETTT-------TEEEEECT-TCCEEEEECSST-----
T ss_pred cEEEee-CCCCCCC--c------------ceEEECCCCCEEEEccCC-------CEEEEEcC-CCcEEEEECCCC-----
Confidence 666542 1111111 0 23333 267898854211 13478998 666665432111
Q ss_pred ccCCCeEEEE-ECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEe-CCeEEEEeecCCCCe
Q 011881 336 RQAGTKLSVV-LDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAF-HGKLHVLTKDASRNI 413 (475)
Q Consensus 336 ~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~GG~~~~~~ 413 (475)
......++. -+|+||+... ..+.|.+||+ +.+...+. ++.. .....+++.- +|+||+... +
T Consensus 229 -~~~~~~i~~d~~g~l~v~~~----~~~~i~~~~~-~g~~~~~~--~~~~----~~~~~~i~~~~~g~l~v~~~--~--- 291 (300)
T 2qc5_A 229 -NARPHAITAGKNSEIWFTEW----GANQIGRITN-DNTIQEYQ--LQTE----NAEPHGITFGKDGSVWFALK--C--- 291 (300)
T ss_dssp -TCCEEEEEECSTTCEEEEET----TTTEEEEECT-TSCEEEEE--CCST----TCCCCCEEECTTSCEEEECS--S---
T ss_pred -CCCceEEEECCCCCEEEecc----CCCeEEEECC-CCcEEEEE--CCcc----CCccceeEeCCCCCEEEEcc--C---
Confidence 111111233 3578998763 1358999999 45565442 1110 1112344443 677777543 2
Q ss_pred eEEEecC
Q 011881 414 SILRADP 420 (475)
Q Consensus 414 ~v~~~d~ 420 (475)
.+..+|+
T Consensus 292 ~i~~~~p 298 (300)
T 2qc5_A 292 KIGKLNL 298 (300)
T ss_dssp EEEEEEE
T ss_pred ceEEeCC
Confidence 3555554
No 69
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=94.69 E-value=1.2 Score=47.69 Aligned_cols=177 Identities=14% Similarity=0.118 Sum_probs=97.6
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCc-cceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVG-RAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.||+ |.. ..-+++||+.+++++.......+ ..-.+++.. ++.|++... ..+.+||+.++
T Consensus 417 ~g~lWi-gt~-----~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-----------~Gl~~~~~~~~ 479 (781)
T 3v9f_A 417 EGNLWF-GTY-----LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-----------AGVFVIDLASK 479 (781)
T ss_dssp TSCEEE-EET-----TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-----------TEEEEEESSSS
T ss_pred CCCEEE-Eec-----cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-----------CceEEEeCCCC
Confidence 577877 321 14689999999999887532111 111222232 578777431 46899999999
Q ss_pred CeEecCCCCcc-ccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCC
Q 011881 257 AWSEVPSMPFS-RAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWP 334 (475)
Q Consensus 257 ~W~~~~~~p~~-r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p 334 (475)
+|+.....+.. ... . . ..+++ --+|.|++-... .|..+||+.+++++..... .+.|
T Consensus 480 ~~~~~~~~~~~~~~~----~-------~-i~~i~~d~~g~lWigt~~--------~Gl~~~~~~~~~~~~~~~~--~~l~ 537 (781)
T 3v9f_A 480 KVIHHYDTSNSQLLE----N-------F-VRSIAQDSEGRFWIGTFG--------GGVGIYTPDMQLVRKFNQY--EGFC 537 (781)
T ss_dssp SCCEEECTTTSSCSC----S-------C-EEEEEECTTCCEEEEESS--------SCEEEECTTCCEEEEECTT--TTCS
T ss_pred eEEecccCccccccc----c-------e-eEEEEEcCCCCEEEEEcC--------CCEEEEeCCCCeEEEccCC--CCCC
Confidence 88766432210 000 0 0 02222 236788874210 2458999999999887541 1122
Q ss_pred CccCCCeEEEE-ECCeEEEEcCCCCCCCCeE-EEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEe-CCeEEEEe
Q 011881 335 ARQAGTKLSVV-LDGELYAFDPSSSLNSAKI-KVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAF-HGKLHVLT 406 (475)
Q Consensus 335 ~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v-~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~G 406 (475)
.... ..++. .+|.|++... +.+ ..||+++++++..... ..++.... .+++.- +|.|++.+
T Consensus 538 ~~~i--~~i~~d~~g~lWi~T~------~Glv~~~d~~~~~~~~~~~~---~gl~~~~i-~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 538 SNTI--NQIYRSSKGQMWLATG------EGLVCFPSARNFDYQVFQRK---EGLPNTHI-RAISEDKNGNIWAST 600 (781)
T ss_dssp CSCE--EEEEECTTSCEEEEET------TEEEEESCTTTCCCEEECGG---GTCSCCCC-CEEEECSSSCEEEEC
T ss_pred CCee--EEEEECCCCCEEEEEC------CCceEEECCCCCcEEEcccc---CCCCCceE-EEEEECCCCCEEEEc
Confidence 1111 11222 3577888642 356 9999999988776421 12332222 344433 67777654
No 70
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=94.60 E-value=2.4 Score=37.97 Aligned_cols=157 Identities=12% Similarity=0.018 Sum_probs=78.7
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCC-CcEEeCCCCCCccceeeeEE-ECCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIA-NTWNEATSMSVGRAYCKTGI-LNDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t-~~W~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
+++.+++++ ...+++||+.+ .+...+........-..++. -+++.+++++...+ ....++.+|..+.
T Consensus 52 dg~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-----~~~~l~~~~~~~~ 120 (297)
T 2ojh_A 52 DGKYLLLNS------EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEF-----GKSAIYLLPSTGG 120 (297)
T ss_dssp TSSEEEEEE------TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTT-----SSCEEEEEETTCC
T ss_pred CCCEEEEEc------CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCC-----CcceEEEEECCCC
Confidence 455555543 13799999998 77776654332121122222 25665555553211 2468889998887
Q ss_pred CeEecCCCCccccCCCCccccccccccceeeEE-EeCCE-EEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCC
Q 011881 257 AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGR-LCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWP 334 (475)
Q Consensus 257 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p 334 (475)
.-..+..... . ..+. .-+++ |++.++.++. ...+.+|..+.....+....
T Consensus 121 ~~~~~~~~~~--~----------------~~~~~spdg~~l~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~----- 172 (297)
T 2ojh_A 121 TPRLMTKNLP--S----------------YWHGWSPDGKSFTYCGIRDQV-----FDIYSMDIDSGVETRLTHGE----- 172 (297)
T ss_dssp CCEECCSSSS--E----------------EEEEECTTSSEEEEEEEETTE-----EEEEEEETTTCCEEECCCSS-----
T ss_pred ceEEeecCCC--c----------------cceEECCCCCEEEEEECCCCc-----eEEEEEECCCCcceEcccCC-----
Confidence 7655543221 1 1222 22444 4433332221 22366677777776654311
Q ss_pred CccCCCeEEEEECCeEEEEcC-CCCCCCCeEEEEeCCCCcEEEcC
Q 011881 335 ARQAGTKLSVVLDGELYAFDP-SSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 335 ~~~~~~~~~~~~~~~lyv~GG-~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
... .......+++.+++.+ .+. ...++.++........+.
T Consensus 173 ~~~--~~~~~s~dg~~l~~~~~~~~--~~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 173 GRN--DGPDYSPDGRWIYFNSSRTG--QMQIWRVRVDGSSVERIT 213 (297)
T ss_dssp SCE--EEEEECTTSSEEEEEECTTS--SCEEEEEETTSSCEEECC
T ss_pred Ccc--ccceECCCCCEEEEEecCCC--CccEEEECCCCCCcEEEe
Confidence 011 1112223555444433 222 357888887777776664
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=94.59 E-value=0.013 Score=60.78 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=29.0
Q ss_pred CCCCCCCHHHHHHHhccCC-hhhhHHHHHhhhhhhhh
Q 011881 41 RLIPSLPDELSIQILARVP-RIFYLNLRAVSRKWKAT 76 (475)
Q Consensus 41 ~~~~~LP~dl~~~iL~~lp-~~~l~~l~~vck~W~~l 76 (475)
..|..||||++.+||.+|| .....+++.|||+|+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 4678899999999999999 89999999999999987
No 72
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=94.52 E-value=2.7 Score=38.86 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=16.2
Q ss_pred eEEEEcCCCCCCCCeEEEEeCC--CCcEEEc
Q 011881 349 ELYAFDPSSSLNSAKIKVYDQK--EDTWKVV 377 (475)
Q Consensus 349 ~lyv~GG~~~~~~~~v~~yd~~--~~~W~~v 377 (475)
.||+.+.. .+.+.+||+. +.+++.+
T Consensus 244 ~l~v~~~~----~~~i~v~d~~~~~~~~~~~ 270 (343)
T 1ri6_A 244 HLYACDRT----ASLITVFSVSEDGSVLSKE 270 (343)
T ss_dssp EEEEEETT----TTEEEEEEECTTSCCEEEE
T ss_pred EEEEEecC----CCEEEEEEEcCCCCceEEe
Confidence 56665532 3578889887 5566665
No 73
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=94.49 E-value=2.7 Score=38.07 Aligned_cols=190 Identities=11% Similarity=0.096 Sum_probs=95.7
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCC---Cc-cceeeeEE--ECCEEEEEeceecCCCCcccCCeEEEEe
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMS---VG-RAYCKTGI--LNDKLYVVGGVSRARGGLTPLQSAEVFD 252 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p---~~-R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd 252 (475)
++.||+.... ...+.+||+.......++... .. ..-..+++ -+++|||.+.. ....+.+||
T Consensus 40 ~g~l~v~~~~-----~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~--------~~~~i~~~d 106 (286)
T 1q7f_A 40 QNDIIVADTN-----NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS--------PTHQIQIYN 106 (286)
T ss_dssp TCCEEEEEGG-----GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG--------GGCEEEEEC
T ss_pred CCCEEEEECC-----CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC--------CCCEEEEEC
Confidence 5778887543 247889998865444443211 11 12233444 26899998632 025788999
Q ss_pred CCCCCeEecCCCCccccCCCCccccccccccceeeEEE-eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCC
Q 011881 253 PTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGE 331 (475)
Q Consensus 253 ~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 331 (475)
+....-..+........ .+++. -+|++|+..... ....+||+.......+......
T Consensus 107 ~~g~~~~~~~~~~~~~~----------------~~i~~~~~g~l~v~~~~~-------~~i~~~~~~g~~~~~~~~~~~~ 163 (286)
T 1q7f_A 107 QYGQFVRKFGATILQHP----------------RGVTVDNKGRIIVVECKV-------MRVIIFDQNGNVLHKFGCSKHL 163 (286)
T ss_dssp TTSCEEEEECTTTCSCE----------------EEEEECTTSCEEEEETTT-------TEEEEECTTSCEEEEEECTTTC
T ss_pred CCCcEEEEecCccCCCc----------------eEEEEeCCCCEEEEECCC-------CEEEEEcCCCCEEEEeCCCCcc
Confidence 65443333321110000 23333 367898864322 2347889766554444321000
Q ss_pred CCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEE-eCCeEEEEeecCC
Q 011881 332 GWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSA-FHGKLHVLTKDAS 410 (475)
Q Consensus 332 ~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~-~~~~l~v~GG~~~ 410 (475)
..+ .+.+..-+|+||+.+.. .+.|.+||+.......+... +.+ ....+++. -+|+|||.....+
T Consensus 164 --~~p---~~i~~~~~g~l~v~~~~----~~~i~~~~~~g~~~~~~~~~---g~~---~~p~~i~~d~~G~l~v~~~~~~ 228 (286)
T 1q7f_A 164 --EFP---NGVVVNDKQEIFISDNR----AHCVKVFNYEGQYLRQIGGE---GIT---NYPIGVGINSNGEILIADNHNN 228 (286)
T ss_dssp --SSE---EEEEECSSSEEEEEEGG----GTEEEEEETTCCEEEEESCT---TTS---CSEEEEEECTTCCEEEEECSSS
T ss_pred --CCc---EEEEECCCCCEEEEECC----CCEEEEEcCCCCEEEEEccC---Ccc---CCCcEEEECCCCCEEEEeCCCC
Confidence 011 11122235889987642 35899999976654444310 001 12234443 3678887764433
Q ss_pred CCeeEEEecCC
Q 011881 411 RNISILRADPR 421 (475)
Q Consensus 411 ~~~~v~~~d~~ 421 (475)
.. +..+|..
T Consensus 229 ~~--i~~~~~~ 237 (286)
T 1q7f_A 229 FN--LTIFTQD 237 (286)
T ss_dssp CE--EEEECTT
T ss_pred EE--EEEECCC
Confidence 23 4455543
No 74
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=94.40 E-value=1.5 Score=40.38 Aligned_cols=146 Identities=11% Similarity=0.111 Sum_probs=75.7
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.+++.|+.++ .+.+||..+.+....-.-. ......+.+ ++++++.|+. ...+.+||..+.
T Consensus 34 ~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~---------d~~i~vwd~~~~ 97 (312)
T 4ery_A 34 NGEWLASSSADK-----LIKIWGAYDGKFEKTISGH--KLGISDVAWSSDSNLLVSASD---------DKTLKIWDVSSG 97 (312)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEET---------TSEEEEEETTTC
T ss_pred CCCEEEEeeCCC-----eEEEEeCCCcccchhhccC--CCceEEEEEcCCCCEEEEECC---------CCEEEEEECCCC
Confidence 455666666543 5777888777665432111 111122222 5677777764 257899999877
Q ss_pred CeEecCCCCccccCCCCccccccccccceeeE-EEeCCEEEEeccCCCCCceeccceEEEeCCCCceEE-cCCCCCCCCC
Q 011881 257 AWSEVPSMPFSRAQGLPNAFFADMLKPIATGM-TSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE-MPIGMGEGWP 334 (475)
Q Consensus 257 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~p 334 (475)
+-... +...... + .++ ..-++.+++.|+.++. ..+||+.+++-.. +.. .
T Consensus 98 ~~~~~--~~~~~~~-------------v-~~~~~~~~~~~l~s~~~d~~-------i~iwd~~~~~~~~~~~~-~----- 148 (312)
T 4ery_A 98 KCLKT--LKGHSNY-------------V-FCCNFNPQSNLIVSGSFDES-------VRIWDVKTGKCLKTLPA-H----- 148 (312)
T ss_dssp CEEEE--EECCSSC-------------E-EEEEECSSSSEEEEEETTSC-------EEEEETTTCCEEEEECC-C-----
T ss_pred cEEEE--EcCCCCC-------------E-EEEEEcCCCCEEEEEeCCCc-------EEEEECCCCEEEEEecC-C-----
Confidence 53221 1100010 0 112 2235566666665532 3788988766432 221 1
Q ss_pred CccCCCeEEE-EECCeEEEEcCCCCCCCCeEEEEeCCCCcEE
Q 011881 335 ARQAGTKLSV-VLDGELYAFDPSSSLNSAKIKVYDQKEDTWK 375 (475)
Q Consensus 335 ~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~ 375 (475)
......++ ..++++++.|+.+ +.+.+||..+.+-.
T Consensus 149 --~~~v~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~~ 184 (312)
T 4ery_A 149 --SDPVSAVHFNRDGSLIVSSSYD----GLCRIWDTASGQCL 184 (312)
T ss_dssp --SSCEEEEEECTTSSEEEEEETT----SCEEEEETTTCCEE
T ss_pred --CCcEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCcee
Confidence 01111122 2356777777643 57999999876543
No 75
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=94.31 E-value=1.6 Score=41.12 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=36.0
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.+++.|+.+ ..+.+||..+.++.....+.........+.+ ++++++.|+. ...+.+||..+.
T Consensus 63 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~v~i~d~~~~ 128 (372)
T 1k8k_C 63 DSNRIVTCGTD-----RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG---------SRVISICYFEQE 128 (372)
T ss_dssp TTTEEEEEETT-----SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET---------TSSEEEEEEETT
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeC---------CCEEEEEEecCC
Confidence 45566666643 3578888888877654332221222222333 5666666663 145677777665
Q ss_pred C
Q 011881 257 A 257 (475)
Q Consensus 257 ~ 257 (475)
.
T Consensus 129 ~ 129 (372)
T 1k8k_C 129 N 129 (372)
T ss_dssp T
T ss_pred C
Confidence 4
No 76
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=94.22 E-value=3.9 Score=38.91 Aligned_cols=147 Identities=12% Similarity=0.074 Sum_probs=70.4
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCcc--------------ceeeeEEECCEEEEEeceecCCCCccc
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGR--------------AYCKTGILNDKLYVVGGVSRARGGLTP 244 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R--------------~~~~~~~~~~~iyv~GG~~~~~~~~~~ 244 (475)
++..++.|+.+ ..+.+||..+.+....-..+... .-..+....+..++.|+.
T Consensus 160 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 225 (425)
T 1r5m_A 160 DGTHIISMDVE-----NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP--------- 225 (425)
T ss_dssp TSSEEEEEETT-----CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECG---------
T ss_pred CCCEEEEEecC-----CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC---------
Confidence 44455555543 35778888776644322211111 022233333344566654
Q ss_pred CCeEEEEeCCCCCeEe-cCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCce
Q 011881 245 LQSAEVFDPTTDAWSE-VPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSW 322 (475)
Q Consensus 245 ~~~~~~yd~~t~~W~~-~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 322 (475)
...+.+||..+.+-.. +.... .. + .+++ .-++++++.|+.++ ...+||..+.+-
T Consensus 226 ~g~i~~~d~~~~~~~~~~~~~~---~~-------------i-~~~~~~~~~~~l~~~~~d~-------~i~i~d~~~~~~ 281 (425)
T 1r5m_A 226 KGAIFVYQITEKTPTGKLIGHH---GP-------------I-SVLEFNDTNKLLLSASDDG-------TLRIWHGGNGNS 281 (425)
T ss_dssp GGCEEEEETTCSSCSEEECCCS---SC-------------E-EEEEEETTTTEEEEEETTS-------CEEEECSSSBSC
T ss_pred CCeEEEEEcCCCceeeeeccCC---Cc-------------e-EEEEECCCCCEEEEEcCCC-------EEEEEECCCCcc
Confidence 2578999998764221 11100 00 0 2222 33566666666443 237788876543
Q ss_pred EEcCCCCCCCCCCccCCCeEEEEE-CCeEEEEcCCCCCCCCeEEEEeCCCCcEE
Q 011881 323 VEMPIGMGEGWPARQAGTKLSVVL-DGELYAFDPSSSLNSAKIKVYDQKEDTWK 375 (475)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~v~~yd~~~~~W~ 375 (475)
...-... . .....++.. ++ +++.++. ...+.+||..+.+-.
T Consensus 282 ~~~~~~~------~-~~i~~~~~~~~~-~l~~~~~----d~~i~i~d~~~~~~~ 323 (425)
T 1r5m_A 282 QNCFYGH------S-QSIVSASWVGDD-KVISCSM----DGSVRLWSLKQNTLL 323 (425)
T ss_dssp SEEECCC------S-SCEEEEEEETTT-EEEEEET----TSEEEEEETTTTEEE
T ss_pred ceEecCC------C-ccEEEEEECCCC-EEEEEeC----CCcEEEEECCCCcEe
Confidence 2211101 0 111113333 45 5666653 358999999876533
No 77
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=94.22 E-value=5.9 Score=40.90 Aligned_cols=197 Identities=11% Similarity=0.032 Sum_probs=101.0
Q ss_pred cceEEEEeCCC------CcEEeCC-CCCCccceeeeEE-ECCEEEEEeceecCCCCcccCCeEEEEeCC-CCCeEecCCC
Q 011881 194 MRCVRRYDPIA------NTWNEAT-SMSVGRAYCKTGI-LNDKLYVVGGVSRARGGLTPLQSAEVFDPT-TDAWSEVPSM 264 (475)
Q Consensus 194 ~~~~~~yd~~t------~~W~~~~-~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~-t~~W~~~~~~ 264 (475)
..+++++|+.+ .+.+.+. .-. ......+. -+++..++........ ......++++|.. ++++.....+
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~SpDG~~la~~~~~~~~~-~~~~~~i~~~d~~~~g~~~~~~~l 236 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDAH--RFVTGPRLSPDGRQAVWLAWDHPRM-PWEGTELKTARVTEDGRFADTRTL 236 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSCS--SEECCCEECTTSSEEEEEEECTTCC-TTTCEEEEEEEECTTSCEEEEEEE
T ss_pred eeEEEEEECCCCccccCCceeEEEecCC--CcccCceECCCCCEEEEEECCCCCC-CCCCcEEEEEEECCCCcccccEEe
Confidence 46899999988 6666664 322 11112222 2565555444322110 0013579999998 5633322211
Q ss_pred CccccCCCCccccccccccceeeE-EEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCC-CCCCccCCCeE
Q 011881 265 PFSRAQGLPNAFFADMLKPIATGM-TSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGE-GWPARQAGTKL 342 (475)
Q Consensus 265 p~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-~~p~~~~~~~~ 342 (475)
....... .... ..-+|++|+.+..++. ...+.+|+.++++..+...... ..|.-..+...
T Consensus 237 ~~~~~~~-------------~~~~~~spdg~l~~~~~~~~~-----~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 237 LGGPEEA-------------IAQAEWAPDGSLIVATDRTGW-----WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW 298 (662)
T ss_dssp EEETTBC-------------EEEEEECTTSCEEEEECTTSS-----CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred CCCCCce-------------EcceEECCCCeEEEEECCCCC-----eEEEEEECCCCceeecccccccccCccccccCce
Confidence 1110010 0122 2347777776654432 2238889989999887542111 00111111111
Q ss_pred EEEE-CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEE-EEeCCeEEEEeecCCCCeeEEEecC
Q 011881 343 SVVL-DGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLL-SAFHGKLHVLTKDASRNISILRADP 420 (475)
Q Consensus 343 ~~~~-~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~-~~~~~~l~v~GG~~~~~~~v~~~d~ 420 (475)
.+.. ++++++.+.. ....++.+|.++.+.+.+.. +. .....+ ..-++++++..+.......+..+|+
T Consensus 299 ~~~~~~~~~~~~~~~---~~~~l~~~d~~~~~~~~l~~-------~~-~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~ 367 (662)
T 3azo_A 299 FAPLANGLIAVVHGK---GAAVLGILDPESGELVDAAG-------PW-TEWAATLTVSGTRAVGVAASPRTAYEVVELDT 367 (662)
T ss_dssp EEECTTSCEEEEEBS---SSCEEEEEETTTTEEEECCS-------SC-CEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred EeEeCCCEEEEEEEc---CccEEEEEECCCCcEEEecC-------CC-CeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence 3333 6787777654 34588999998888777642 11 111223 3446677777666555555666776
Q ss_pred CC
Q 011881 421 RD 422 (475)
Q Consensus 421 ~~ 422 (475)
.+
T Consensus 368 ~~ 369 (662)
T 3azo_A 368 VT 369 (662)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 78
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=94.22 E-value=0.59 Score=40.74 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=75.1
Q ss_pred EEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--E-EeC----CCCCCccceeeeEEECCEEEEEeceecCCCCcccCCe
Q 011881 175 IGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--W-NEA----TSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQS 247 (475)
Q Consensus 175 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W-~~~----~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 247 (475)
+..+++++|+|-| +.+|+++...-. . +.+ +.+|. ....+....++++|+|-| +.
T Consensus 11 ~~~~~g~~~fFkg-------~~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg-----------~~ 71 (196)
T 3c7x_A 11 VAMLRGEMFVFKE-------RWFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG-----------DK 71 (196)
T ss_dssp EEEETTEEEEEET-------TEEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET-----------TE
T ss_pred EEEcCCEEEEEEC-------CEEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC-----------CE
Confidence 3467899999976 467777543100 0 111 23443 222221124789999977 46
Q ss_pred EEEEeCCCCCeEecCCCCccccCC---CCccccccccccceeeEEE--eCCEEEEeccCCCCCceeccceEEEeCCCCce
Q 011881 248 AEVFDPTTDAWSEVPSMPFSRAQG---LPNAFFADMLKPIATGMTS--YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSW 322 (475)
Q Consensus 248 ~~~yd~~t~~W~~~~~~p~~r~~~---~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 322 (475)
.++||..+ ..+.-|.+.... .|.. -+-++.. .++++|+|-|. .-++||..+++=
T Consensus 72 yw~~~~~~----~~~gyPk~I~~~~~glP~~--------~IDAA~~~~~~g~~yfFkG~---------~yw~yd~~~~~v 130 (196)
T 3c7x_A 72 HWVFDEAS----LEPGYPKHIKELGRGLPTD--------KIDAALFWMPNGKTYFFRGN---------KYYRFNEELRAV 130 (196)
T ss_dssp EEEEETTE----ECTTCSEEGGGTCBSCCSS--------CCSEEEEETTTTEEEEEETT---------EEEEEETTTTEE
T ss_pred EEEEeCCc----ccCCCCeEhhhcCCCCCCC--------cccEEEEEccCCEEEEEECC---------EEEEEeCCcccc
Confidence 78887542 111112111110 0000 0023333 26899998662 237899876532
Q ss_pred EEc-CCCCCCCCCCccCCCeEEEEE-CC-eEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 323 VEM-PIGMGEGWPARQAGTKLSVVL-DG-ELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 323 ~~~-~~~~~~~~p~~~~~~~~~~~~-~~-~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
..- +..+. .|+.-.....++... ++ ++|++-| +..+.||..+++
T Consensus 131 ~~gyPk~i~-~~~gip~~idaAf~~~~~~~~YfFkg------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 131 DSEYPKNIK-VWEGIPESPRGSFMGSDEVFTYFYKG------NKYWKFNNQKLK 177 (196)
T ss_dssp CTTCSEEGG-GSBTCCSSCSEEEECTTSSEEEEEET------TEEEEEETTTTE
T ss_pred cCCCCccHH-HCCCcCCCcceeEEecCCCEEEEEEC------CEEEEEECCcce
Confidence 110 00000 111111112223334 44 8999977 579999998764
No 79
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=94.17 E-value=0.37 Score=47.88 Aligned_cols=158 Identities=17% Similarity=0.149 Sum_probs=78.7
Q ss_pred eEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEe--C----CCCCCccceeeeEE--ECCEEEEEeceecCCCCcccC
Q 011881 174 AIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNE--A----TSMSVGRAYCKTGI--LNDKLYVVGGVSRARGGLTPL 245 (475)
Q Consensus 174 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~--~----~~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 245 (475)
+++.+++++|+|-| ..+|+++.....+.. + +.+|.. .. ++.. .++++|+|=|
T Consensus 267 Ai~~~~ge~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~Wp~LP~~-iD-Aa~~~~~~g~~~fFKg----------- 326 (450)
T 1su3_A 267 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVFWPQLPNG-LE-AAYEFADRDEVRFFKG----------- 326 (450)
T ss_dssp EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGTCTTSCSS-CC-EEEEEGGGTEEEEEET-----------
T ss_pred eEEecCCeEEEEeC-------CEEEEEcCCCCcccceehhHhccCCCCC-ee-EEEEEcCCCeEEEEeC-----------
Confidence 44567999999976 356666654433221 1 123321 11 2222 2689999977
Q ss_pred CeEEEEeCCCCCeEecCCCCcccc--CCCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCc
Q 011881 246 QSAEVFDPTTDAWSEVPSMPFSRA--QGLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNS 321 (475)
Q Consensus 246 ~~~~~yd~~t~~W~~~~~~p~~r~--~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 321 (475)
+.+++|+..+ ..+.-|.+.. .+.+.. ...| -++... ++++|+|-|. .-++||..+++
T Consensus 327 ~~~W~~~~~~----~~~gyP~~i~~~~g~P~~-----~~~I-DAA~~~~~~~k~yfFkG~---------~yw~yd~~~~~ 387 (450)
T 1su3_A 327 NKYWAVQGQN----VLHGYPKDIYSSFGFPRT-----VKHI-DAALSEENTGKTYFFVAN---------KYWRYDEYKRS 387 (450)
T ss_dssp TEEEEEETTE----ECTTCSEEHHHHHCCCTT-----CCCC-CEEEEETTTTEEEEEETT---------EEEEEETTTTE
T ss_pred CEEEEecCCc----ccCCCceeeehhhcCCCC-----CCcc-ceEEEEcCCCeEEEEeCC---------EEEEEeCCCcc
Confidence 3667776432 1111111111 000000 0000 233333 6899998662 23788876543
Q ss_pred eEEc-CCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEE
Q 011881 322 WVEM-PIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKV 376 (475)
Q Consensus 322 W~~~-~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 376 (475)
-..- +..+...+|.......++...++++|+|-| +..|.||..+++=..
T Consensus 388 ~~~gYPk~I~~~fpgip~~iDAA~~~~g~~YFFkg------~~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 388 MDPGYPKMIAHDFPGIGHKVDAVFMKDGFFYFFHG------TRQYKFDPKTKRILT 437 (450)
T ss_dssp ECSSCSEEHHHHSTTSCSCCSEEEEETTEEEEEET------TEEEEEETTTTEEEE
T ss_pred ccCCCCcchhhcCCCCCCCccEEEEcCCeEEEEeC------CEEEEEECCcceEec
Confidence 2210 000001112111122235567899999977 579999998776443
No 80
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=94.16 E-value=7.1 Score=41.60 Aligned_cols=155 Identities=10% Similarity=0.088 Sum_probs=87.3
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCC-CCCccceeeeEE-ECCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATS-MSVGRAYCKTGI-LNDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~-~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
.++.||+... ..+++||+.+++++.+.. .+....-.++.. -++.||+... ...+.+||+.+
T Consensus 140 ~~g~lwi~t~-------~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~----------~~Gl~~~~~~~ 202 (795)
T 4a2l_A 140 SPEQLLISTP-------EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGTS----------TDGLYTYSITQ 202 (795)
T ss_dssp ETTEEEEEET-------TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEEEEES----------SSCEEEEETTT
T ss_pred CCCCEEEEEC-------CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCEEEEEC----------CCCEEEEeCCC
Confidence 4788887532 368999999988876643 111110112222 3788888321 13588999999
Q ss_pred CCeEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCC
Q 011881 256 DAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWP 334 (475)
Q Consensus 256 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p 334 (475)
++++.+...+.. .. ..++. --++.|+|.... .|..+||+.+++++........+..
T Consensus 203 ~~~~~~~~~~~~-~~--------------i~~i~~d~~g~lwigt~~--------~Gl~~~~~~~~~~~~~~~~~~~~~~ 259 (795)
T 4a2l_A 203 KTFEKVIPILGT-KQ--------------IQAILQQSPTRIWVATEG--------AGLFLINPKTKEIKNYLHSPSNPKS 259 (795)
T ss_dssp CCEEECC----C-CC--------------EEEEEEEETTEEEEEEBS--------SCEEEEETTTTEEEEECCCTTCTTS
T ss_pred CeEEEecCCCCC-Ce--------------eEEEEEcCCCCEEEEECC--------CCeEEEeCCCCeEEEeecCCCCccc
Confidence 999876432211 11 02222 347888884210 3458999999998876542110000
Q ss_pred CccCCCeEEEEE-CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 335 ARQAGTKLSVVL-DGELYAFDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 335 ~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
.......+++.. +|.|+|-.. +.+..||+.++++..+.
T Consensus 260 l~~~~i~~i~~d~~g~lWigt~------~Gl~~~~~~~~~~~~~~ 298 (795)
T 4a2l_A 260 ISSNYIRSLAMDSQNRLWIGTF------NDLNIYHEGTDSFASYS 298 (795)
T ss_dssp CSCSBEEEEEECTTSCEEEEES------SCEEEEETTTTEEEEEC
T ss_pred cCCCeEEEEEEcCCCCEEEEeC------ChhheEcCCCCeEEEEe
Confidence 011111112222 577877532 25899999999998764
No 81
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=94.14 E-value=2.7 Score=39.00 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=42.9
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEe-CCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNE-ATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.+|+....+ ......+++||+.+.+.+. +........-..++.. ++++|+...... .......+++||+.+.
T Consensus 97 dg~l~v~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~---~~~~~~~l~~~~~~~~ 172 (333)
T 2dg1_A 97 DGRLFVCYLGD-FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY---STNPLGGVYYVSPDFR 172 (333)
T ss_dssp TSCEEEEECTT-SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB---TTBCCEEEEEECTTSC
T ss_pred CCcEEEEeCCC-CCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc---ccCCCceEEEEeCCCC
Confidence 66788765322 1123579999999887653 2222111111222332 678888643210 0112357899999887
Q ss_pred CeEec
Q 011881 257 AWSEV 261 (475)
Q Consensus 257 ~W~~~ 261 (475)
+...+
T Consensus 173 ~~~~~ 177 (333)
T 2dg1_A 173 TVTPI 177 (333)
T ss_dssp CEEEE
T ss_pred EEEEe
Confidence 76654
No 82
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=94.07 E-value=0.69 Score=43.68 Aligned_cols=69 Identities=14% Similarity=0.208 Sum_probs=42.8
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCcccee-eeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYC-KTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.+++.|+.+ ..+.+||..+.+++.+..+....... +++.. ++++++.|+. ...+.+||..+.
T Consensus 19 ~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~~ 84 (372)
T 1k8k_C 19 DRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT---------DRNAYVWTLKGR 84 (372)
T ss_dssp TSSEEEEECSS-----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET---------TSCEEEEEEETT
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcC---------CCeEEEEECCCC
Confidence 56666777643 47889999988776655443222222 22222 5666677763 247889999888
Q ss_pred CeEec
Q 011881 257 AWSEV 261 (475)
Q Consensus 257 ~W~~~ 261 (475)
++...
T Consensus 85 ~~~~~ 89 (372)
T 1k8k_C 85 TWKPT 89 (372)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 76654
No 83
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=94.04 E-value=1.2 Score=44.25 Aligned_cols=153 Identities=16% Similarity=0.248 Sum_probs=81.2
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeC--CCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEA--TSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~--~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++++|+|-| +..|+||..+++.... +.+| . --++....+++|+|-| +..++||+.+.
T Consensus 158 ~~~~yfFkG-------~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG-----------~~y~rfd~~~~ 216 (460)
T 1qhu_A 158 DEGILFFQG-------NRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQG-----------NQFLRFNPVSG 216 (460)
T ss_dssp SSEEEEEET-------TEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEET-----------TEEEEECTTTC
T ss_pred CCeEEEEec-------ccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEEC-----------CEEEEEcCccC
Confidence 678898876 4789999988765431 2232 2 2244455799999988 46788988765
Q ss_pred CeEecCCCCccccC---CCCc-------------ccccccc--ccceeeEEE-eCCEEEEeccCCCCCceeccceEEEeC
Q 011881 257 AWSEVPSMPFSRAQ---GLPN-------------AFFADML--KPIATGMTS-YMGRLCVPQSLYSWPFFVDVGGEIYDP 317 (475)
Q Consensus 257 ~W~~~~~~p~~r~~---~~~~-------------~~~~~~~--~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~ 317 (475)
+=. +..|.+... ..+. ....+.. ....-++.. .+|++|+|-|.. -+++|.
T Consensus 217 ~v~--~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~~---------yWR~~~ 285 (460)
T 1qhu_A 217 EVP--PGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGSH---------YWRLDT 285 (460)
T ss_dssp CCC--TTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETTE---------EEECTT
T ss_pred ccc--CCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCCE---------EEEEec
Confidence 311 222211100 0000 0000000 000134444 578999986633 256666
Q ss_pred CCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCC
Q 011881 318 DTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKE 371 (475)
Q Consensus 318 ~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~ 371 (475)
..+.+.. ......||.-....-++...++++|+|=| +.+|+|+..+
T Consensus 286 ~~~~~~p--~~Is~~WpglP~~IDAAf~~~~~~yfFkG------~~yw~f~~~~ 331 (460)
T 1qhu_A 286 NRDGWHS--WPIAHQWPQGPSTVDAAFSWEDKLYLIQD------TKVYVFLTKG 331 (460)
T ss_dssp GGGCCCC--EEGGGTCTTSCSSCSEEEEETTEEEEEET------TEEEEEECSB
T ss_pred CCCCcCc--cchhhhccCCCCCCcEEEEECCeEEEEeC------CEEEEEeCCC
Confidence 5443321 01112232222223335667899999966 5799998754
No 84
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.03 E-value=2 Score=39.75 Aligned_cols=134 Identities=14% Similarity=0.174 Sum_probs=67.8
Q ss_pred eEEEEeCCCCcEEeCCCCCCccceeeeEEE-CC-EEEEEeceecCCCCcccCCe-EEEEeCCCCC-e-----EecCCCCc
Q 011881 196 CVRRYDPIANTWNEATSMSVGRAYCKTGIL-ND-KLYVVGGVSRARGGLTPLQS-AEVFDPTTDA-W-----SEVPSMPF 266 (475)
Q Consensus 196 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~-~~~yd~~t~~-W-----~~~~~~p~ 266 (475)
.+.+||+.+.+....-+. ....+.++.. ++ .||+.+.. ... +.+|+...+. - ..++.-..
T Consensus 109 ~i~v~d~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~---------~~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 177 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIPI--PYDAVGIAISPNGNGLILIDRS---------SANTVRRFKIDADGVLFDTGQEFISGGTR 177 (331)
T ss_dssp EEEEEETTTTEEEEEEEC--CTTEEEEEECTTSSCEEEEEET---------TTTEEEEEEECTTCCEEEEEEEEECSSSS
T ss_pred cEEEEECCCCCeEEEEEC--CCCccceEECCCCCEEEEEecC---------CCceEEEEEECCCCcEeecCCccccCCCC
Confidence 899999988876543222 2222334443 44 57777542 134 6777765432 1 11110000
Q ss_pred cccCCCCccccccccccceeeEE-EeCCE-EEEeccCCCCCceeccceEEEeCCCCce---E-EcCCCCCCCCCCccCCC
Q 011881 267 SRAQGLPNAFFADMLKPIATGMT-SYMGR-LCVPQSLYSWPFFVDVGGEIYDPDTNSW---V-EMPIGMGEGWPARQAGT 340 (475)
Q Consensus 267 ~r~~~~~~~~~~~~~~~~~~~~~-~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W---~-~~~~~~~~~~p~~~~~~ 340 (475)
+ ..++ .-+++ +|+.+..+ ....+||+.+.+. . .++.. . .| .
T Consensus 178 ~------------------~~~~~spdg~~l~v~~~~~-------~~v~v~d~~~~~~~~~~~~~~~~-~--~~-----~ 224 (331)
T 3u4y_A 178 P------------------FNITFTPDGNFAFVANLIG-------NSIGILETQNPENITLLNAVGTN-N--LP-----G 224 (331)
T ss_dssp E------------------EEEEECTTSSEEEEEETTT-------TEEEEEECSSTTSCEEEEEEECS-S--CC-----C
T ss_pred c------------------cceEECCCCCEEEEEeCCC-------CeEEEEECCCCcccceeeeccCC-C--CC-----c
Confidence 0 2222 23454 77755322 1247899988775 2 23221 0 01 1
Q ss_pred eEEEEECCe-EEEEcCCCCCCCCeEEEEeCCCCcEEEc
Q 011881 341 KLSVVLDGE-LYAFDPSSSLNSAKIKVYDQKEDTWKVV 377 (475)
Q Consensus 341 ~~~~~~~~~-lyv~GG~~~~~~~~v~~yd~~~~~W~~v 377 (475)
..+..-+++ ||+... ..+.+.+||+++.+.+.+
T Consensus 225 ~~~~spdg~~l~v~~~----~~~~i~~~d~~~~~~~~~ 258 (331)
T 3u4y_A 225 TIVVSRDGSTVYVLTE----STVDVFNFNQLSGTLSFV 258 (331)
T ss_dssp CEEECTTSSEEEEECS----SEEEEEEEETTTTEEEEE
T ss_pred eEEECCCCCEEEEEEc----CCCEEEEEECCCCceeee
Confidence 112333555 777654 235799999999887554
No 85
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=93.86 E-value=3.6 Score=37.14 Aligned_cols=183 Identities=13% Similarity=0.003 Sum_probs=93.8
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCC-ccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSV-GRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
-++.+|+.... ...+++||+. .+.+... ++. ...-..++.. +++||+.... ...+.+||+ +
T Consensus 66 ~~g~l~v~~~~-----~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~d~-~ 128 (299)
T 2z2n_A 66 SDGEVWFTENA-----ANKIGRITKK-GIIKEYT-LPNPDSAPYGITEGPNGDIWFTEMN---------GNRIGRITD-D 128 (299)
T ss_dssp TTSCEEEEETT-----TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSCEEEEETT---------TTEEEEECT-T
T ss_pred CCCCEEEeCCC-----CCeEEEECCC-CcEEEEe-CCCcCCCceeeEECCCCCEEEEecC---------CceEEEECC-C
Confidence 36778887432 2368889986 4554443 221 1222333333 5789987532 257889998 6
Q ss_pred CCeEecCCCCccccCCCCccccccccccceeeEEEe-CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCC
Q 011881 256 DAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY-MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWP 334 (475)
Q Consensus 256 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p 334 (475)
++...+.. +..... ..+++.. ++++|+..... .+..+||+ +++...+..+.
T Consensus 129 g~~~~~~~-~~~~~~--------------~~~i~~~~~g~l~v~~~~~-------~~i~~~~~-~g~~~~~~~~~----- 180 (299)
T 2z2n_A 129 GKIREYEL-PNKGSY--------------PSFITLGSDNALWFTENQN-------NAIGRITE-SGDITEFKIPT----- 180 (299)
T ss_dssp CCEEEEEC-SSTTCC--------------EEEEEECTTSCEEEEETTT-------TEEEEECT-TCCEEEEECSS-----
T ss_pred CCEEEecC-CCCCCC--------------CceEEEcCCCCEEEEeCCC-------CEEEEEcC-CCcEEEeeCCC-----
Confidence 66554321 111111 0333333 67888854211 23478999 77777642211
Q ss_pred CccCCCeEEEE-ECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEe-CCeEEEEeecCCCC
Q 011881 335 ARQAGTKLSVV-LDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAF-HGKLHVLTKDASRN 412 (475)
Q Consensus 335 ~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~GG~~~~~ 412 (475)
.......++. -+++||+.... .+.+.+||+ +++...+.. +. ......+++.- +|+||+... ....
T Consensus 181 -~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~~--~~----~~~~~~~i~~~~~g~l~v~~~-~~~~ 247 (299)
T 2z2n_A 181 -PASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEITEFKI--PT----PNARPHAITAGAGIDLWFTEW-GANK 247 (299)
T ss_dssp -TTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEEC--SS----TTCCEEEEEECSTTCEEEEET-TTTE
T ss_pred -CCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcEEEEEC--CC----CCCCceeEEECCCCCEEEecc-CCce
Confidence 1111111333 35789887532 357999999 777765421 10 11122344443 567777542 2222
Q ss_pred eeEEEecC
Q 011881 413 ISILRADP 420 (475)
Q Consensus 413 ~~v~~~d~ 420 (475)
+..+|+
T Consensus 248 --i~~~d~ 253 (299)
T 2z2n_A 248 --IGRLTS 253 (299)
T ss_dssp --EEEEET
T ss_pred --EEEECC
Confidence 445555
No 86
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=93.85 E-value=2 Score=39.56 Aligned_cols=68 Identities=4% Similarity=-0.096 Sum_probs=36.9
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCC--ccceeeeEEE--CCEEEEEeceecCCC---CcccCCeEEEE
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSV--GRAYCKTGIL--NDKLYVVGGVSRARG---GLTPLQSAEVF 251 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~--~R~~~~~~~~--~~~iyv~GG~~~~~~---~~~~~~~~~~y 251 (475)
++.+|+.. ...+++||+.+.+++.+..... +........+ +++||+.. ...... .......++++
T Consensus 64 dG~l~v~~-------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~ 135 (297)
T 3g4e_A 64 SGGYVATI-------GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSL 135 (297)
T ss_dssp TSSEEEEE-------TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEE
T ss_pred CCCEEEEE-------CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEE
Confidence 56666653 2478999999998887654322 2222222333 67888743 111000 00123578888
Q ss_pred eCC
Q 011881 252 DPT 254 (475)
Q Consensus 252 d~~ 254 (475)
|+.
T Consensus 136 d~~ 138 (297)
T 3g4e_A 136 FPD 138 (297)
T ss_dssp CTT
T ss_pred ECC
Confidence 875
No 87
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=93.78 E-value=2.2 Score=38.27 Aligned_cols=160 Identities=11% Similarity=-0.030 Sum_probs=78.4
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CC-EEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-ND-KLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
+++.+++++... .....++.+|..+.+-+.+..... ...+... ++ .|++.++.+ + ...++.+|..+.
T Consensus 95 dg~~l~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~----~---~~~l~~~~~~~~ 163 (297)
T 2ojh_A 95 DGALYAISDKVE-FGKSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRD----Q---VFDIYSMDIDSG 163 (297)
T ss_dssp TSSEEEEEECTT-TSSCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEET----T---EEEEEEEETTTC
T ss_pred CCCEEEEEEeCC-CCcceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECCC----C---ceEEEEEECCCC
Confidence 455444544221 135688999988877666543322 2222222 44 455455431 1 236777778877
Q ss_pred CeEecCCCCccccCCCCccccccccccceeeEEEeCCE-EEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCC
Q 011881 257 AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGR-LCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPA 335 (475)
Q Consensus 257 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~ 335 (475)
....+...+.... .....-+++ |++.+..++. ...+.++........+....
T Consensus 164 ~~~~~~~~~~~~~----------------~~~~s~dg~~l~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~------ 216 (297)
T 2ojh_A 164 VETRLTHGEGRND----------------GPDYSPDGRWIYFNSSRTGQ-----MQIWRVRVDGSSVERITDSA------ 216 (297)
T ss_dssp CEEECCCSSSCEE----------------EEEECTTSSEEEEEECTTSS-----CEEEEEETTSSCEEECCCCS------
T ss_pred cceEcccCCCccc----------------cceECCCCCEEEEEecCCCC-----ccEEEECCCCCCcEEEecCC------
Confidence 7766654322111 112223455 4443322321 32366676777766654311
Q ss_pred ccCCCeEEEEECCeEEEEcCCCCC-------CCCeEEEEeCCCCcEEEc
Q 011881 336 RQAGTKLSVVLDGELYAFDPSSSL-------NSAKIKVYDQKEDTWKVV 377 (475)
Q Consensus 336 ~~~~~~~~~~~~~~lyv~GG~~~~-------~~~~v~~yd~~~~~W~~v 377 (475)
. .........+++.+++++.... ....+++||.++.+...+
T Consensus 217 ~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 264 (297)
T 2ojh_A 217 Y-GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL 264 (297)
T ss_dssp E-EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred c-ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence 1 0111112235655555432211 124699999998877655
No 88
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=93.65 E-value=3.9 Score=36.90 Aligned_cols=183 Identities=11% Similarity=0.003 Sum_probs=93.9
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
++.||+.... ...+.+||+. .+++..........-+.++.. ++++|+.... ...+.+||+. ++
T Consensus 72 ~g~l~v~~~~-----~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 72 LGDIWFTENG-----ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLN---------GDRIGKLTAD-GT 135 (300)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETT---------TTEEEEECTT-SC
T ss_pred CCCEEEEecC-----CCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccC---------CCeEEEECCC-CC
Confidence 5778886432 2468999988 666544211111222333333 6789887532 2578899987 66
Q ss_pred eEecCCCCccccCCCCccccccccccceeeEEE-eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCc
Q 011881 258 WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPAR 336 (475)
Q Consensus 258 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~ 336 (475)
..... ++..... ..+++. -+++||+..... ....+||+ +++...+..+. .
T Consensus 136 ~~~~~-~~~~~~~--------------~~~i~~d~~g~l~v~~~~~-------~~i~~~~~-~g~~~~~~~~~------~ 186 (300)
T 2qc5_A 136 IYEYD-LPNKGSY--------------PAFITLGSDNALWFTENQN-------NSIGRITN-TGKLEEYPLPT------N 186 (300)
T ss_dssp EEEEE-CSSTTCC--------------EEEEEECTTSSEEEEETTT-------TEEEEECT-TCCEEEEECSS------T
T ss_pred EEEcc-CCCCCCC--------------ceeEEECCCCCEEEEecCC-------CeEEEECC-CCcEEEeeCCC------C
Confidence 55432 1111111 033333 357788854211 23478998 67776643211 1
Q ss_pred cCCCeEEEE-ECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEe-CCeEEEEeecCCCCee
Q 011881 337 QAGTKLSVV-LDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAF-HGKLHVLTKDASRNIS 414 (475)
Q Consensus 337 ~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~GG~~~~~~~ 414 (475)
......++. -++.||+.... .+.+.+||+ +.++..+.. +. ......+++.- +|+||+.... ++.
T Consensus 187 ~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~~--~~----~~~~~~~i~~d~~g~l~v~~~~-~~~-- 252 (300)
T 2qc5_A 187 AAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISEYDI--PT----PNARPHAITAGKNSEIWFTEWG-ANQ-- 252 (300)
T ss_dssp TCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEEC--SS----TTCCEEEEEECSTTCEEEEETT-TTE--
T ss_pred CCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEEEEC--CC----CCCCceEEEECCCCCEEEeccC-CCe--
Confidence 111111333 26789987531 247999999 566665421 10 11122344433 5777776522 222
Q ss_pred EEEecC
Q 011881 415 ILRADP 420 (475)
Q Consensus 415 v~~~d~ 420 (475)
+..+|+
T Consensus 253 i~~~~~ 258 (300)
T 2qc5_A 253 IGRITN 258 (300)
T ss_dssp EEEECT
T ss_pred EEEECC
Confidence 455555
No 89
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=93.64 E-value=7.4 Score=40.07 Aligned_cols=123 Identities=15% Similarity=0.074 Sum_probs=70.2
Q ss_pred eeEEEeCCEEEEEcCCCCCCCcceEEEEeC-CCCc--EEeCCCCCCc-----c---ceeeeEE--ECCE----EEEEece
Q 011881 173 CAIGAVDGCLYVLGGFSRTSAMRCVRRYDP-IANT--WNEATSMSVG-----R---AYCKTGI--LNDK----LYVVGGV 235 (475)
Q Consensus 173 ~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~-~t~~--W~~~~~~p~~-----R---~~~~~~~--~~~~----iyv~GG~ 235 (475)
.+.++.++.||+.... ...++.+|. .+.+ |+.-...+.. + .....++ .+++ ||+...
T Consensus 56 ~tP~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~- 129 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL- 129 (599)
T ss_dssp SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-
T ss_pred eccEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-
Confidence 3445679999998652 246899999 7765 8875443221 1 1123455 5777 888543
Q ss_pred ecCCCCcccCCeEEEEeCCCCC--eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceE
Q 011881 236 SRARGGLTPLQSAEVFDPTTDA--WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGE 313 (475)
Q Consensus 236 ~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 313 (475)
...+..+|.+|.+ |+.-..-+...... ..+-++.++.||+-.+..... .+-...
T Consensus 130 ---------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~-------------~ssP~v~~g~V~vg~~g~e~g--~~g~v~ 185 (599)
T 1w6s_A 130 ---------DGNVAALNAETGETVWKVENSDIKVGSTL-------------TIAPYVVKDKVIIGSSGAELG--VRGYLT 185 (599)
T ss_dssp ---------TSEEEEEETTTCCEEEEEECCCGGGTCBC-------------CSCCEEETTEEEECCBCGGGT--CCCEEE
T ss_pred ---------CCEEEEEECCCCCEEEeecCCCCCcccee-------------ecCCEEECCEEEEEecccccC--CCCeEE
Confidence 2478999998876 88532211111110 023356789888754311100 001237
Q ss_pred EEeCCCCc--eEEc
Q 011881 314 IYDPDTNS--WVEM 325 (475)
Q Consensus 314 ~yd~~~~~--W~~~ 325 (475)
.||.++++ |+.-
T Consensus 186 A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 186 AYDVKTGEQVWRAY 199 (599)
T ss_dssp EEETTTCCEEEEEE
T ss_pred EEECCCCcEEEEEc
Confidence 89998876 8754
No 90
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=93.64 E-value=4.5 Score=37.59 Aligned_cols=147 Identities=15% Similarity=0.097 Sum_probs=74.7
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
++..++.|+.+ ..+.+||..+.+-...-.... ..-.+++.. +++.++.|+. ...+.+||..+.+
T Consensus 133 dg~~l~~g~~d-----g~v~i~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~lasg~~---------dg~i~iwd~~~~~ 197 (321)
T 3ow8_A 133 DSQYLATGTHV-----GKVNIFGVESGKKEYSLDTRG-KFILSIAYSPDGKYLASGAI---------DGIINIFDIATGK 197 (321)
T ss_dssp TSSEEEEECTT-----SEEEEEETTTCSEEEEEECSS-SCEEEEEECTTSSEEEEEET---------TSCEEEEETTTTE
T ss_pred CCCEEEEEcCC-----CcEEEEEcCCCceeEEecCCC-ceEEEEEECCCCCEEEEEcC---------CCeEEEEECCCCc
Confidence 45566666543 367778877665322111111 111122222 5677777764 2578899998875
Q ss_pred eEe-cCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCc
Q 011881 258 WSE-VPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPAR 336 (475)
Q Consensus 258 W~~-~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~ 336 (475)
-.. +..-..+ .. .....-++++++.|+.++. ..+||..+.+-...-.. .
T Consensus 198 ~~~~~~~h~~~-v~---------------~l~~spd~~~l~s~s~dg~-------i~iwd~~~~~~~~~~~~-------h 247 (321)
T 3ow8_A 198 LLHTLEGHAMP-IR---------------SLTFSPDSQLLVTASDDGY-------IKIYDVQHANLAGTLSG-------H 247 (321)
T ss_dssp EEEEECCCSSC-CC---------------EEEECTTSCEEEEECTTSC-------EEEEETTTCCEEEEECC-------C
T ss_pred EEEEEcccCCc-ee---------------EEEEcCCCCEEEEEcCCCe-------EEEEECCCcceeEEEcC-------C
Confidence 322 1111100 00 1122336677777765542 37889887665432110 0
Q ss_pred cCCCeEEE-EECCeEEEEcCCCCCCCCeEEEEeCCCCcE
Q 011881 337 QAGTKLSV-VLDGELYAFDPSSSLNSAKIKVYDQKEDTW 374 (475)
Q Consensus 337 ~~~~~~~~-~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W 374 (475)
......++ ..+++.++.|+.+ ..|.+||..+.+-
T Consensus 248 ~~~v~~~~~sp~~~~l~s~s~D----~~v~iwd~~~~~~ 282 (321)
T 3ow8_A 248 ASWVLNVAFCPDDTHFVSSSSD----KSVKVWDVGTRTC 282 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEE
T ss_pred CCceEEEEECCCCCEEEEEeCC----CcEEEEeCCCCEE
Confidence 11111122 2367777777643 5799999987653
No 91
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=93.39 E-value=4.6 Score=36.87 Aligned_cols=183 Identities=10% Similarity=0.032 Sum_probs=90.6
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
.+.+++.|..+ ..+.++|+.+.+ |+.-..-. .......+.-+++|++.+ .+.+..||+ ++
T Consensus 4 ~~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs~-----------~~~V~~~d~-~G 65 (276)
T 3no2_A 4 PQHLLVGGSGW-----NKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFSY-----------SKGAKMITR-DG 65 (276)
T ss_dssp CCEEEEECTTC-----SEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEEC-----------BSEEEEECT-TS
T ss_pred CCcEEEeeCCC-----CEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEeC-----------CCCEEEECC-CC
Confidence 45677776533 578888987775 76543211 112222333478888832 146899999 55
Q ss_pred C--eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCC-ceEEc-CCCCCCC
Q 011881 257 A--WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTN-SWVEM-PIGMGEG 332 (475)
Q Consensus 257 ~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-~W~~~-~~~~~~~ 332 (475)
+ |+.-.+...... ......+|++++....+. .....+|++.. .|+.- ......
T Consensus 66 ~~~W~~~~~~~~~~~----------------~~~~~~dG~~lv~~~~~~------~~v~~vd~~Gk~l~~~~~~~~~~~- 122 (276)
T 3no2_A 66 RELWNIAAPAGCEMQ----------------TARILPDGNALVAWCGHP------STILEVNMKGEVLSKTEFETGIER- 122 (276)
T ss_dssp CEEEEEECCTTCEEE----------------EEEECTTSCEEEEEESTT------EEEEEECTTSCEEEEEEECCSCSS-
T ss_pred CEEEEEcCCCCcccc----------------ccEECCCCCEEEEecCCC------CEEEEEeCCCCEEEEEeccCCCCc-
Confidence 3 775432111110 122345677776543211 12367787443 24432 211111
Q ss_pred CCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCC-cEEEcCCcCccccCCCCCCCeEEE-EeCCeEEEEeecCC
Q 011881 333 WPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKED-TWKVVIGKVPIRDFADSESPYLLS-AFHGKLHVLTKDAS 410 (475)
Q Consensus 333 ~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~-~W~~v~~~~p~~~~~~~r~~~~~~-~~~~~l~v~GG~~~ 410 (475)
+.... .......+|.+++... ....|.+||++-+ .|+.-.. ...+++. ..+|.++|.+...+
T Consensus 123 -~~~~~-~~v~~~~~G~~lv~~~----~~~~v~~~d~~G~~~w~~~~~----------~~~~~~~~~~~g~~~v~~~~~~ 186 (276)
T 3no2_A 123 -PHAQF-RQINKNKKGNYLVPLF----ATSEVREIAPNGQLLNSVKLS----------GTPFSSAFLDNGDCLVACGDAH 186 (276)
T ss_dssp -GGGSC-SCCEECTTSCEEEEET----TTTEEEEECTTSCEEEEEECS----------SCCCEEEECTTSCEEEECBTTS
T ss_pred -ccccc-cCceECCCCCEEEEec----CCCEEEEECCCCCEEEEEECC----------CCccceeEcCCCCEEEEeCCCC
Confidence 11111 1113445677766653 2358999999833 3664321 0112333 34677777765432
Q ss_pred CCeeEEEecCC
Q 011881 411 RNISILRADPR 421 (475)
Q Consensus 411 ~~~~v~~~d~~ 421 (475)
.+..+|+.
T Consensus 187 ---~v~~~d~~ 194 (276)
T 3no2_A 187 ---CFVQLNLE 194 (276)
T ss_dssp ---EEEEECTT
T ss_pred ---eEEEEeCc
Confidence 25666655
No 92
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=93.33 E-value=5.1 Score=38.36 Aligned_cols=153 Identities=11% Similarity=0.034 Sum_probs=75.7
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEe-----CCCCCCccceeeeEEE--CC-EEEEEeceecCCCCcccCCeEEE
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNE-----ATSMSVGRAYCKTGIL--ND-KLYVVGGVSRARGGLTPLQSAEV 250 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~-----~~~~p~~R~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~~~ 250 (475)
++.+++.|+.+ ..+.+||..++.... +..+.........+.+ ++ .+++.|+. ...+.+
T Consensus 93 ~~~~l~s~s~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~---------dg~i~i 158 (402)
T 2aq5_A 93 NDNVIASGSED-----CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC---------DNVILV 158 (402)
T ss_dssp CTTEEEEEETT-----SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET---------TSCEEE
T ss_pred CCCEEEEEeCC-----CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC---------CCEEEE
Confidence 56677777654 368888888765421 1111111111122222 33 57777764 257899
Q ss_pred EeCCCCCeEecCCCCccccCCCCccccccccccceeeEEE-eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcC-CC
Q 011881 251 FDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMP-IG 328 (475)
Q Consensus 251 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~ 328 (475)
||..+.+....-........ ..+++. -++.+++.|+.++ ...+||+.+++-...- .
T Consensus 159 wd~~~~~~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~- 216 (402)
T 2aq5_A 159 WDVGTGAAVLTLGPDVHPDT--------------IYSVDWSRDGALICTSCRDK-------RVRVIEPRKGTVVAEKDR- 216 (402)
T ss_dssp EETTTTEEEEEECTTTCCSC--------------EEEEEECTTSSCEEEEETTS-------EEEEEETTTTEEEEEEEC-
T ss_pred EECCCCCccEEEecCCCCCc--------------eEEEEECCCCCEEEEEecCC-------cEEEEeCCCCceeeeecc-
Confidence 99988764432100000011 022222 2566666666443 2378999887643321 1
Q ss_pred CCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCC
Q 011881 329 MGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 329 ~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 372 (475)
... .......+...++++++.|... .....+.+||..+.
T Consensus 217 ~~~----~~~~~~~~~~~~~~~l~~g~~~-~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 217 PHE----GTRPVHAVFVSEGKILTTGFSR-MSERQVALWDTKHL 255 (402)
T ss_dssp SSC----SSSCCEEEECSTTEEEEEEECT-TCCEEEEEEETTBC
T ss_pred CCC----CCcceEEEEcCCCcEEEEeccC-CCCceEEEEcCccc
Confidence 110 1101121333467777776211 12368999998764
No 93
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=93.25 E-value=0.8 Score=48.77 Aligned_cols=107 Identities=8% Similarity=0.037 Sum_probs=61.5
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--C--CEEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--N--DKLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
++.+++.|+.+ ..+.+||..+.++..+..+........++.+ + +.+++.|+. ...+.+||..
T Consensus 20 dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~---------Dg~I~vwd~~ 85 (753)
T 3jro_A 20 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY---------DGKVLIWKEE 85 (753)
T ss_dssp SSCCEEEEETT-----TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET---------TSCEEEEEEE
T ss_pred CCCeEEEEECC-----CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC---------CCeEEEEECC
Confidence 45566666654 3678888877777766544432322333333 3 667777764 2578999999
Q ss_pred CCCeEecCCCCccccCCCCccccccccccceeeEEE-eC--CEEEEeccCCCCCceeccceEEEeCCCC
Q 011881 255 TDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-YM--GRLCVPQSLYSWPFFVDVGGEIYDPDTN 320 (475)
Q Consensus 255 t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 320 (475)
++.|..+..+...... ..++.. -+ +.+++.|+.++ ...+||..++
T Consensus 86 ~~~~~~~~~~~~h~~~--------------V~~v~~sp~~~~~~l~sgs~dg-------~I~vwdl~~~ 133 (753)
T 3jro_A 86 NGRWSQIAVHAVHSAS--------------VNSVQWAPHEYGPLLLVASSDG-------KVSVVEFKEN 133 (753)
T ss_dssp TTEEEEEEEECCCSSC--------------EEEEEECCGGGCSEEEEEETTS-------EEEEEECCSS
T ss_pred CCcccccccccCCCCC--------------eEEEEECCCCCCCEEEEEeCCC-------cEEEEEeecC
Confidence 9887765443322221 022222 23 66777776553 2367888765
No 94
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=93.23 E-value=1.7 Score=40.21 Aligned_cols=68 Identities=4% Similarity=-0.078 Sum_probs=36.3
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcE-E-eCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTW-N-EATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W-~-~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
+..+|+.+..+ ..+++||+.+.+. . .+..-..++ ++++.. +..|| .+.. .+ ....+.+||+.
T Consensus 51 g~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~s~dg~~l~-~~~~----~~--~~~~i~v~d~~ 116 (331)
T 3u4y_A 51 CSNVVVTSDFC-----QTLVQIETQLEPPKVVAIQEGQSSM--ADVDITPDDQFAV-TVTG----LN--HPFNMQSYSFL 116 (331)
T ss_dssp SCEEEEEESTT-----CEEEEEECSSSSCEEEEEEECSSCC--CCEEECTTSSEEE-ECCC----SS--SSCEEEEEETT
T ss_pred CCEEEEEeCCC-----CeEEEEECCCCceeEEecccCCCCc--cceEECCCCCEEE-EecC----CC--CcccEEEEECC
Confidence 34577776422 3899999988774 2 222222222 113332 34566 3321 10 12389999999
Q ss_pred CCCeEe
Q 011881 255 TDAWSE 260 (475)
Q Consensus 255 t~~W~~ 260 (475)
+++-..
T Consensus 117 ~~~~~~ 122 (331)
T 3u4y_A 117 KNKFIS 122 (331)
T ss_dssp TTEEEE
T ss_pred CCCeEE
Confidence 886543
No 95
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=93.22 E-value=6.1 Score=37.79 Aligned_cols=65 Identities=11% Similarity=0.117 Sum_probs=37.1
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
.++.+++.|+.+ ..+.+||+.+.+-...-.... ..-.+++.. ++++++.|+. ...+.+||..+.
T Consensus 107 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~---------d~~i~iwd~~~~ 171 (420)
T 3vl1_A 107 LQMRRFILGTTE-----GDIKVLDSNFNLQREIDQAHV-SEITKLKFFPSGEALISSSQ---------DMQLKIWSVKDG 171 (420)
T ss_dssp SSSCEEEEEETT-----SCEEEECTTSCEEEEETTSSS-SCEEEEEECTTSSEEEEEET---------TSEEEEEETTTC
T ss_pred cCCCEEEEEECC-----CCEEEEeCCCcceeeeccccc-CccEEEEECCCCCEEEEEeC---------CCeEEEEeCCCC
Confidence 466677777654 367888988765443311111 111122222 5666666664 257899999875
Q ss_pred C
Q 011881 257 A 257 (475)
Q Consensus 257 ~ 257 (475)
+
T Consensus 172 ~ 172 (420)
T 3vl1_A 172 S 172 (420)
T ss_dssp C
T ss_pred c
Confidence 4
No 96
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=93.21 E-value=5.5 Score=37.30 Aligned_cols=179 Identities=10% Similarity=0.096 Sum_probs=87.9
Q ss_pred eEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCC-CccceeeeEE-ECCEEEEEeceecCCCCcccCCeEEEE
Q 011881 174 AIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMS-VGRAYCKTGI-LNDKLYVVGGVSRARGGLTPLQSAEVF 251 (475)
Q Consensus 174 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p-~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~y 251 (475)
++...++.+|+.|.. ..+++-+-.-.+|+.+.... .+-....++. -++.+|+.|.. ..+++-
T Consensus 84 ~i~~~~~~~~~~g~~------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------g~v~~S 147 (327)
T 2xbg_A 84 SVSFQGNEGWIVGEP------PIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNV----------GAIYRT 147 (327)
T ss_dssp EEEEETTEEEEEEET------TEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETT----------CCEEEE
T ss_pred EEEecCCeEEEEECC------CeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCC----------ccEEEE
Confidence 444556788887521 24555433457899986431 1211223333 46788887741 134443
Q ss_pred eCCCCCeEecCCCCccccCCCCccccccccccceeeEEE-eCCEEEEeccCCCCCceeccceEEE-eCCCCceEEcCCCC
Q 011881 252 DPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWPFFVDVGGEIY-DPDTNSWVEMPIGM 329 (475)
Q Consensus 252 d~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~y-d~~~~~W~~~~~~~ 329 (475)
+-.-.+|+.+..... ..- ++++. -++.+|++|- .+ ..++- |....+|+.+..+.
T Consensus 148 ~DgG~tW~~~~~~~~-~~~---------------~~~~~~~~~~~~~~g~-~G-------~~~~S~d~gG~tW~~~~~~~ 203 (327)
T 2xbg_A 148 KDSGKNWQALVQEAI-GVM---------------RNLNRSPSGEYVAVSS-RG-------SFYSTWEPGQTAWEPHNRTT 203 (327)
T ss_dssp SSTTSSEEEEECSCC-CCE---------------EEEEECTTSCEEEEET-TS-------SEEEEECTTCSSCEEEECCS
T ss_pred cCCCCCCEEeecCCC-cce---------------EEEEEcCCCcEEEEEC-CC-------cEEEEeCCCCCceeECCCCC
Confidence 333457998753221 111 33333 2566666542 11 01222 33357899885421
Q ss_pred CCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCC-CCcEEEcCCcCccccCCCCCCCeEEEEe-CCeEEEEee
Q 011881 330 GEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQK-EDTWKVVIGKVPIRDFADSESPYLLSAF-HGKLHVLTK 407 (475)
Q Consensus 330 ~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~-~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~GG 407 (475)
.......+..-++.+|+.+.. ..++..+.+ ..+|+.+... .++.....+.++.. ++.+|++|+
T Consensus 204 ------~~~~~~~~~~~~g~~~~~~~~-----G~~~~s~~D~G~tW~~~~~~----~~~~~~~~~~v~~~~~~~~~~~g~ 268 (327)
T 2xbg_A 204 ------SRRLHNMGFTPDGRLWMIVNG-----GKIAFSDPDNSENWGELLSP----LRRNSVGFLDLAYRTPNEVWLAGG 268 (327)
T ss_dssp ------SSCEEEEEECTTSCEEEEETT-----TEEEEEETTEEEEECCCBCT----TSSCCSCEEEEEESSSSCEEEEES
T ss_pred ------CCccceeEECCCCCEEEEeCC-----ceEEEecCCCCCeeEeccCC----cccCCcceEEEEecCCCEEEEEeC
Confidence 111122122246788887642 245555433 5689987421 11121222344333 678888876
No 97
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=93.20 E-value=2.6 Score=37.29 Aligned_cols=155 Identities=13% Similarity=0.137 Sum_probs=77.2
Q ss_pred EEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc-E--EeC----CCCCCccceeeeEE-ECCEEEEEeceecCCCCcccCC
Q 011881 175 IGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT-W--NEA----TSMSVGRAYCKTGI-LNDKLYVVGGVSRARGGLTPLQ 246 (475)
Q Consensus 175 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~-W--~~~----~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 246 (475)
+...++++|+|=| +.+|+++..... . ..+ +.+|. ....+... .++++|+|-| +
T Consensus 36 i~~~~g~~~fFkg-------~~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~IDAA~~~~~~~k~yfFkG-----------~ 96 (218)
T 1gen_A 36 IAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG-----------N 96 (218)
T ss_dssp EEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSCS-CCSEEEEETTTTEEEEEET-----------T
T ss_pred EEeCCCcEEEEEC-------CEEEEEeCCCCccCCCEEHHHhcCCCCC-CccEEEEECCCCEEEEEeC-----------C
Confidence 4457899999976 356666554321 1 111 23332 22222221 2689999977 4
Q ss_pred eEEEEeCCCCCeEecCCCCccccC-CCCccccccccccceeeEEE--eCCEEEEeccCCCCCceeccceEEEeCCCCceE
Q 011881 247 SAEVFDPTTDAWSEVPSMPFSRAQ-GLPNAFFADMLKPIATGMTS--YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWV 323 (475)
Q Consensus 247 ~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 323 (475)
..++||.. +..+.-|.+... +.+.. ...+ .++.. .++++|+|-|. .-++||..+++=.
T Consensus 97 ~yW~y~~~----~~~~gyPk~I~~~g~p~~-----~~~I-DAAf~~~~~g~~YfFkG~---------~ywr~d~~~~~v~ 157 (218)
T 1gen_A 97 EYWIYSAS----TLERGYPKPLTSLGLPPD-----VQRV-DAAFNWSKNKKTYIFAGD---------KFWRYNEVKKKMD 157 (218)
T ss_dssp EEEEEETT----EECTTCSEEGGGGTCCTT-----CCCC-SEEEEETTTTEEEEEETT---------EEEEEETTTTEEC
T ss_pred EEEEEcCc----cccCCCCccHhhcCCCCC-----cCCc-cEEEEEcCCCeEEEEECC---------EEEEEECcccccc
Confidence 78888852 223322322221 11110 0001 33443 47899998662 2378998765322
Q ss_pred Ec-CCCCCCCCCCccCCCeEEEEEC--CeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 324 EM-PIGMGEGWPARQAGTKLSVVLD--GELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 324 ~~-~~~~~~~~p~~~~~~~~~~~~~--~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
.- +..+...|+.-.....++...+ |++|++-| +..+.||..+..
T Consensus 158 ~gyPr~i~~~w~g~p~~idaAf~~~~~g~~YfFkg------~~y~~~~~~~~~ 204 (218)
T 1gen_A 158 PGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKG------AYYLKLENQSLK 204 (218)
T ss_dssp SSCCEEHHHHSSSCCSSCSEEEECTTTCEEEEEET------TEEEEEETTEEE
T ss_pred CCCCcchhhccCCCCCCCCEEEEEcCCCcEEEEEC------CEEEEEECCcee
Confidence 10 0000001111111122244444 89999977 578899886554
No 98
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=93.14 E-value=0.15 Score=45.71 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=37.1
Q ss_pred CCEEEEeccCCCCCceeccceEEEeCCCCceEE-cCCCCCCCCCCcc-----CCCeEEEE--ECCeEEEEcCCCCCCCCe
Q 011881 292 MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE-MPIGMGEGWPARQ-----AGTKLSVV--LDGELYAFDPSSSLNSAK 363 (475)
Q Consensus 292 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~p~~~-----~~~~~~~~--~~~~lyv~GG~~~~~~~~ 363 (475)
++++|+|-|. .-++||..+++=.. -+..+..++|... ....++.. .++++|++-| +.
T Consensus 129 ~~k~yfFkG~---------~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg------~~ 193 (227)
T 3lp9_A 129 GKEVYLFKGD---------QYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKD------DH 193 (227)
T ss_dssp TTEEEEEETT---------EEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEET------TE
T ss_pred CCEEEEEECC---------EEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEEC------CE
Confidence 6899998762 23789887553211 0100111233211 11222333 3589999977 57
Q ss_pred EEEEeCCCC
Q 011881 364 IKVYDQKED 372 (475)
Q Consensus 364 v~~yd~~~~ 372 (475)
.|.||..++
T Consensus 194 Ywr~d~~~~ 202 (227)
T 3lp9_A 194 YARVKVTPX 202 (227)
T ss_dssp EEEEECCSS
T ss_pred EEEEECCcc
Confidence 999998876
No 99
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=93.10 E-value=1.4 Score=42.31 Aligned_cols=144 Identities=14% Similarity=0.109 Sum_probs=68.9
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
++. ++.|+.+ ..+.+||..+.+-...-..... .-..++.. ++++++.|+. ...+.+||..+.+
T Consensus 217 ~~~-~~~~~~~-----g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~ 280 (425)
T 1r5m_A 217 DDK-FVIPGPK-----GAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASD---------DGTLRIWHGGNGN 280 (425)
T ss_dssp TTE-EEEECGG-----GCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEET---------TSCEEEECSSSBS
T ss_pred CCE-EEEEcCC-----CeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcC---------CCEEEEEECCCCc
Confidence 444 5566543 4688899887642211111111 11122222 5666666663 2468889987754
Q ss_pred eEe-cCCCCccccCCCCccccccccccceeeEEEe-CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCC
Q 011881 258 WSE-VPSMPFSRAQGLPNAFFADMLKPIATGMTSY-MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPA 335 (475)
Q Consensus 258 W~~-~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~ 335 (475)
-.. +.... .. ..+++.. ++ +++.++.++ ...+||..+.+-...-....
T Consensus 281 ~~~~~~~~~---~~--------------i~~~~~~~~~-~l~~~~~d~-------~i~i~d~~~~~~~~~~~~~~----- 330 (425)
T 1r5m_A 281 SQNCFYGHS---QS--------------IVSASWVGDD-KVISCSMDG-------SVRLWSLKQNTLLALSIVDG----- 330 (425)
T ss_dssp CSEEECCCS---SC--------------EEEEEEETTT-EEEEEETTS-------EEEEEETTTTEEEEEEECTT-----
T ss_pred cceEecCCC---cc--------------EEEEEECCCC-EEEEEeCCC-------cEEEEECCCCcEeEecccCC-----
Confidence 221 11111 11 0233333 45 555555443 23788987765433211000
Q ss_pred ccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 336 RQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 336 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
. .-.......++++++.|+.+ +.+.+||..+.+
T Consensus 331 ~-~i~~~~~s~~~~~l~~~~~d----g~i~i~~~~~~~ 363 (425)
T 1r5m_A 331 V-PIFAGRISQDGQKYAVAFMD----GQVNVYDLKKLN 363 (425)
T ss_dssp C-CEEEEEECTTSSEEEEEETT----SCEEEEECHHHH
T ss_pred c-cEEEEEEcCCCCEEEEEECC----CeEEEEECCCCc
Confidence 0 00111122356777777643 478899887554
No 100
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=93.09 E-value=2.1 Score=40.16 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=37.4
Q ss_pred cceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCC
Q 011881 194 MRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPS 263 (475)
Q Consensus 194 ~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 263 (475)
.-.++.+|..+.+++.+........-..++.. +++||+.+... ....+.+||+.+++++.+..
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~-------~~~~v~~~~~~~g~~~~~~~ 80 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKED-------DEGGIAAWQIDGQTAHKLNT 80 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEET-------TEEEEEEEEEETTEEEEEEE
T ss_pred CEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecC-------CCceEEEEEecCCcEEEeee
Confidence 34578888888888765322111111123322 67888776421 12578999998888776654
No 101
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=93.07 E-value=2.5 Score=40.60 Aligned_cols=153 Identities=9% Similarity=0.010 Sum_probs=79.4
Q ss_pred EEEeCCEEEEEcCCCCCCCcceEEEEeCCCCcE--EeC----CCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCC
Q 011881 175 IGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTW--NEA----TSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQ 246 (475)
Q Consensus 175 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W--~~~----~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 246 (475)
+..+++++|+|=| ..+|+++.....- ..+ +.+|. ... ++... ++++|+|-| +
T Consensus 186 v~~~~g~~~fFkg-------~~~Wr~~~~~~~~~p~~I~~~wpgLP~-~iD-Aa~~~~~~g~~~fFkg-----------~ 245 (365)
T 3ba0_A 186 VTTVGNKIFFFKD-------RFFWLKVSERPKTSVNLISSLWPTLPS-GIE-AAYEIEARNQVFLFKD-----------D 245 (365)
T ss_dssp EEEETTEEEEEET-------TEEEECCSSCCCCCEEEHHHHCSSCCS-SCC-EEEEEGGGTEEEEEET-----------T
T ss_pred EEEcCCeEEEEeC-------CEEEEEcCCCccCCccchhhhccCCCC-Ccc-EEEEecCCCEEEEEeC-----------C
Confidence 4457899999965 3667776543221 111 23342 222 22233 799999977 4
Q ss_pred eEEEEeCCCCC--e-EecCC--CCccccCCCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCC
Q 011881 247 SAEVFDPTTDA--W-SEVPS--MPFSRAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDT 319 (475)
Q Consensus 247 ~~~~yd~~t~~--W-~~~~~--~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~ 319 (475)
..++|+..+.. + +.+.. +|..... + -++... ++++|+|-|. .-++||..+
T Consensus 246 ~yWr~~~~~~~~gyPk~I~~~GlP~~~~~-------------I-DAA~~~~~~~~~yfFkG~---------~yw~yd~~~ 302 (365)
T 3ba0_A 246 KYWLISNLRPEPNYPKSIHSFGFPNFVKK-------------I-DAAVFNPRFYRTYFFVDN---------QYWRYDERR 302 (365)
T ss_dssp EEEECSTTSCTTTCSEETTTTTCCTTCCC-------------C-CEEEEETTTTEEEEEETT---------EEEEEETTT
T ss_pred EEEEEcCCcccCCCCceeeeccCCCCCCC-------------c-CEEEEeCCCCEEEEEECC---------EEEEEeCCc
Confidence 67777654211 1 12221 1211001 0 233333 5899998662 237898776
Q ss_pred CceEEc-CCCCCCCCCCccCCCeEEEEE-CCeEEEEcCCCCCCCCeEEEEeCCCCcEEE
Q 011881 320 NSWVEM-PIGMGEGWPARQAGTKLSVVL-DGELYAFDPSSSLNSAKIKVYDQKEDTWKV 376 (475)
Q Consensus 320 ~~W~~~-~~~~~~~~p~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 376 (475)
++-..- +..+...||.-.....++... ++++|+|-| +..|.||..+.+-..
T Consensus 303 ~~v~~gyPk~I~~~f~g~p~~iDaA~~~~~g~~YfFkg------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 303 QMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFFQG------SNQFEYDFLLQRITK 355 (365)
T ss_dssp TEECSSCCCCHHHHSTTCCSSCSEEEEETTTEEEEEET------TEEEEEETTTTEEEE
T ss_pred ceecCCCCcchhhcCCCCCCccceeeEecCCcEEEEeC------CEEEEEECCccEEec
Confidence 532210 100111122211222334555 899999977 589999998876554
No 102
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=93.01 E-value=5.7 Score=36.89 Aligned_cols=183 Identities=11% Similarity=0.057 Sum_probs=90.0
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEe-CCCCCCccceeeeEE-ECCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNE-ATSMSVGRAYCKTGI-LNDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.+++.|+.+ ..+.+||..+.+-.. +..-+.. -.+++. -+++.++.|+. ...+.+||..+.
T Consensus 91 ~~~~l~s~s~D-----~~i~lWd~~~~~~~~~~~~~~~~--~~~~~~spdg~~l~~g~~---------dg~v~i~~~~~~ 154 (321)
T 3ow8_A 91 TLPIAASSSLD-----AHIRLWDLENGKQIKSIDAGPVD--AWTLAFSPDSQYLATGTH---------VGKVNIFGVESG 154 (321)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEECCTTC--CCCEEECTTSSEEEEECT---------TSEEEEEETTTC
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCCEEEEEeCCCcc--EEEEEECCCCCEEEEEcC---------CCcEEEEEcCCC
Confidence 34455666654 367788887765432 2111111 112222 25667777764 257888988876
Q ss_pred CeEecCCCCccccCCCCccccccccccceeeE-EEeCCEEEEeccCCCCCceeccceEEEeCCCCceEE-cCCCCCCCCC
Q 011881 257 AWSEVPSMPFSRAQGLPNAFFADMLKPIATGM-TSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE-MPIGMGEGWP 334 (475)
Q Consensus 257 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~p 334 (475)
+-...-... ... + .++ ..-++++.+.|+.++. ..+||..+++-.. +.. ..
T Consensus 155 ~~~~~~~~~--~~~-------------v-~~~~~spdg~~lasg~~dg~-------i~iwd~~~~~~~~~~~~-h~---- 206 (321)
T 3ow8_A 155 KKEYSLDTR--GKF-------------I-LSIAYSPDGKYLASGAIDGI-------INIFDIATGKLLHTLEG-HA---- 206 (321)
T ss_dssp SEEEEEECS--SSC-------------E-EEEEECTTSSEEEEEETTSC-------EEEEETTTTEEEEEECC-CS----
T ss_pred ceeEEecCC--Cce-------------E-EEEEECCCCCEEEEEcCCCe-------EEEEECCCCcEEEEEcc-cC----
Confidence 532211000 000 0 122 2336677777765532 3788988775432 221 10
Q ss_pred CccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEE-eCCeEEEEeecCCCCe
Q 011881 335 ARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSA-FHGKLHVLTKDASRNI 413 (475)
Q Consensus 335 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~-~~~~l~v~GG~~~~~~ 413 (475)
.+ -...+...++++++.|+.+ ..|.+||..+.+-...-. ........++. -+++.++.|+.++.
T Consensus 207 ~~--v~~l~~spd~~~l~s~s~d----g~i~iwd~~~~~~~~~~~-------~h~~~v~~~~~sp~~~~l~s~s~D~~-- 271 (321)
T 3ow8_A 207 MP--IRSLTFSPDSQLLVTASDD----GYIKIYDVQHANLAGTLS-------GHASWVLNVAFCPDDTHFVSSSSDKS-- 271 (321)
T ss_dssp SC--CCEEEECTTSCEEEEECTT----SCEEEEETTTCCEEEEEC-------CCSSCEEEEEECTTSSEEEEEETTSC--
T ss_pred Cc--eeEEEEcCCCCEEEEEcCC----CeEEEEECCCcceeEEEc-------CCCCceEEEEECCCCCEEEEEeCCCc--
Confidence 01 1111223467777777743 579999998765443210 01111122222 25777777765443
Q ss_pred eEEEecCC
Q 011881 414 SILRADPR 421 (475)
Q Consensus 414 ~v~~~d~~ 421 (475)
+...|+.
T Consensus 272 -v~iwd~~ 278 (321)
T 3ow8_A 272 -VKVWDVG 278 (321)
T ss_dssp -EEEEETT
T ss_pred -EEEEeCC
Confidence 4445554
No 103
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=92.94 E-value=9.2 Score=39.09 Aligned_cols=122 Identities=11% Similarity=0.057 Sum_probs=70.9
Q ss_pred eEEEeCCEEEEEcCCCCCCCcceEEEEeC-CCCc--EEeCCCCCCc--------cceeeeEEECCEEEEEeceecCCCCc
Q 011881 174 AIGAVDGCLYVLGGFSRTSAMRCVRRYDP-IANT--WNEATSMSVG--------RAYCKTGILNDKLYVVGGVSRARGGL 242 (475)
Q Consensus 174 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~-~t~~--W~~~~~~p~~--------R~~~~~~~~~~~iyv~GG~~~~~~~~ 242 (475)
+.++.++.||+.... ...++.+|. .+.+ |+.-...... ....+.++.+++||+...
T Consensus 57 ~P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------- 123 (571)
T 2ad6_A 57 APLVIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------- 123 (571)
T ss_dssp CCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT--------
T ss_pred ccEEECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC--------
Confidence 445679999998652 247899999 7765 8875433211 112245667999998753
Q ss_pred ccCCeEEEEeCCCCC--eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCC
Q 011881 243 TPLQSAEVFDPTTDA--WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTN 320 (475)
Q Consensus 243 ~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 320 (475)
...+..+|.+|++ |+.-..-+...... ..+-++.++.+|+-.+..... .+-....||++++
T Consensus 124 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~-------------~~~P~v~~g~v~vg~~~~~~~--~~g~v~a~D~~tG 186 (571)
T 2ad6_A 124 --NGHLLALDAKTGKINWEVEVCDPKVGSTL-------------TQAPFVAKDTVLMGCSGAELG--VRGAVNAFDLKTG 186 (571)
T ss_dssp --TSEEEEEETTTCCEEEEEECCCGGGTCBC-------------CSCCEEETTEEEEECBCGGGT--CCCEEEEEETTTC
T ss_pred --CCEEEEEECCCCCEEEEecCCCCCcccee-------------ccCCEEECCEEEEEecCCccC--CCCEEEEEECCCC
Confidence 2578999998875 88532211110010 023345689988854321100 0012378999877
Q ss_pred c--eEEc
Q 011881 321 S--WVEM 325 (475)
Q Consensus 321 ~--W~~~ 325 (475)
+ |+.-
T Consensus 187 ~~~W~~~ 193 (571)
T 2ad6_A 187 ELKWRAF 193 (571)
T ss_dssp CEEEEEE
T ss_pred cEEEEEc
Confidence 5 8753
No 104
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=92.90 E-value=5.8 Score=38.01 Aligned_cols=148 Identities=14% Similarity=0.054 Sum_probs=74.9
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCe
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAW 258 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 258 (475)
++.+++.|+.+ ..+.+||..+.+....-. .......+...++.+++.|+. ...+.+||..+..-
T Consensus 145 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~ 208 (401)
T 4aez_A 145 DGSFLSVGLGN-----GLVDIYDVESQTKLRTMA--GHQARVGCLSWNRHVLSSGSR---------SGAIHHHDVRIANH 208 (401)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTCCEEEEEC--CCSSCEEEEEEETTEEEEEET---------TSEEEEEETTSSSC
T ss_pred CCCEEEEECCC-----CeEEEEECcCCeEEEEec--CCCCceEEEEECCCEEEEEcC---------CCCEEEEecccCcc
Confidence 55566666543 367888988766433211 111222333446667777764 25788999874331
Q ss_pred --EecCCCCccccCCCCccccccccccceeeEEE-eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCC
Q 011881 259 --SEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPA 335 (475)
Q Consensus 259 --~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~ 335 (475)
..+.... .. ..++.. -++.+++.|+.++ ...+||..+.+-...-...
T Consensus 209 ~~~~~~~~~---~~--------------v~~~~~~~~~~~l~s~~~d~-------~v~iwd~~~~~~~~~~~~~------ 258 (401)
T 4aez_A 209 QIGTLQGHS---SE--------------VCGLAWRSDGLQLASGGNDN-------VVQIWDARSSIPKFTKTNH------ 258 (401)
T ss_dssp EEEEEECCS---SC--------------EEEEEECTTSSEEEEEETTS-------CEEEEETTCSSEEEEECCC------
T ss_pred eeeEEcCCC---CC--------------eeEEEEcCCCCEEEEEeCCC-------eEEEccCCCCCccEEecCC------
Confidence 1111111 11 022222 2566777776553 2378898875533211101
Q ss_pred ccCCCeEEEEE--CCeEEEEcCCCCCCCCeEEEEeCCCCcEE
Q 011881 336 RQAGTKLSVVL--DGELYAFDPSSSLNSAKIKVYDQKEDTWK 375 (475)
Q Consensus 336 ~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~W~ 375 (475)
. .....++.. +..+++.||.. ....+.+||..+.+-.
T Consensus 259 ~-~~v~~~~~~p~~~~ll~~~~gs--~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 259 N-AAVKAVAWCPWQSNLLATGGGT--MDKQIHFWNAATGARV 297 (401)
T ss_dssp S-SCCCEEEECTTSTTEEEEECCT--TTCEEEEEETTTCCEE
T ss_pred c-ceEEEEEECCCCCCEEEEecCC--CCCEEEEEECCCCCEE
Confidence 1 111113332 44677776411 2357999999876543
No 105
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=92.86 E-value=2.8 Score=39.80 Aligned_cols=183 Identities=9% Similarity=-0.014 Sum_probs=90.4
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--C-CEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--N-DKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
++..++.|+.++ .+.+||..+.+-...-.... ....++.+ + +.+++.||. -..+.+||..+
T Consensus 150 dg~~l~sgs~dg-----~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~~~~~~~s~~~---------dg~v~~wd~~~ 213 (357)
T 4g56_B 150 DGTQAVSGGKDF-----SVKVWDLSQKAVLKSYNAHS--SEVNCVAACPGKDTIFLSCGE---------DGRILLWDTRK 213 (357)
T ss_dssp SSSEEEEEETTS-----CEEEEETTTTEEEEEECCCS--SCEEEEEECTTCSSCEEEEET---------TSCEEECCTTS
T ss_pred CCCEEEEEeCCC-----eEEEEECCCCcEEEEEcCCC--CCEEEEEEccCCCceeeeecc---------CCceEEEECCC
Confidence 566667776543 57888988876433211111 11122222 3 346677764 24688899887
Q ss_pred CCeEecCCCCccccCCCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCceEE-cCCCCCCC
Q 011881 256 DAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE-MPIGMGEG 332 (475)
Q Consensus 256 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~ 332 (475)
.+-...-........ ..+++.. ++.+++.|+.++ ....||+.+.+=.. +..
T Consensus 214 ~~~~~~~~~~~~~~~--------------v~~v~~sp~~~~~la~g~~d~-------~i~~wd~~~~~~~~~~~~----- 267 (357)
T 4g56_B 214 PKPATRIDFCASDTI--------------PTSVTWHPEKDDTFACGDETG-------NVSLVNIKNPDSAQTSAV----- 267 (357)
T ss_dssp SSCBCBCCCTTCCSC--------------EEEEEECTTSTTEEEEEESSS-------CEEEEESSCGGGCEEECC-----
T ss_pred Cceeeeeeecccccc--------------ccchhhhhcccceEEEeeccc-------ceeEEECCCCcEeEEEec-----
Confidence 653322221111111 0222222 356777666543 23778887654221 111
Q ss_pred CCCccCCCeEEEE-ECC-eEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEE--eCCeEEEEeec
Q 011881 333 WPARQAGTKLSVV-LDG-ELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSA--FHGKLHVLTKD 408 (475)
Q Consensus 333 ~p~~~~~~~~~~~-~~~-~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~--~~~~l~v~GG~ 408 (475)
.......++. .++ ++++.|+.+ ..|.+||.++.+-.... .....-.+++. .++++++.||.
T Consensus 268 ---~~~~v~~l~~sp~~~~~lasgs~D----~~i~iwd~~~~~~~~~~--------~H~~~V~~vafsP~d~~~l~s~s~ 332 (357)
T 4g56_B 268 ---HSQNITGLAYSYHSSPFLASISED----CTVAVLDADFSEVFRDL--------SHRDFVTGVAWSPLDHSKFTTVGW 332 (357)
T ss_dssp ---CSSCEEEEEECSSSSCCEEEEETT----SCEEEECTTSCEEEEEC--------CCSSCEEEEEECSSSTTEEEEEET
T ss_pred ---cceeEEEEEEcCCCCCEEEEEeCC----CEEEEEECCCCcEeEEC--------CCCCCEEEEEEeCCCCCEEEEEcC
Confidence 1111111222 244 556666533 57999999887654432 11112223333 36788888876
Q ss_pred CCCCeeEEEecCC
Q 011881 409 ASRNISILRADPR 421 (475)
Q Consensus 409 ~~~~~~v~~~d~~ 421 (475)
++. +...|+.
T Consensus 333 Dg~---v~iW~~~ 342 (357)
T 4g56_B 333 DHK---VLHHHLP 342 (357)
T ss_dssp TSC---EEEEECC
T ss_pred CCe---EEEEECC
Confidence 554 4455554
No 106
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=92.86 E-value=0.52 Score=44.88 Aligned_cols=151 Identities=15% Similarity=0.059 Sum_probs=72.1
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.+++.|+.+ ..+.+||..++.|+.+..+.........+.+ ++++++.|+. ...+.+||..+.
T Consensus 22 ~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---------d~~v~vwd~~~~ 87 (377)
T 3dwl_C 22 QRTEFVTTTAT-----NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ---------DRNAYVYEKRPD 87 (377)
T ss_dssp SSSEEECCCSS-----SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET---------TSSEEEC-----
T ss_pred CCCEEEEecCC-----CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC---------CCeEEEEEcCCC
Confidence 56666777654 3577888888888877666543333333333 5677777764 246889999887
Q ss_pred C-eEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCc-eEEcCCCCCCCC
Q 011881 257 A-WSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNS-WVEMPIGMGEGW 333 (475)
Q Consensus 257 ~-W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~ 333 (475)
. |.....+...... ..++. .-++++++.|+.++ ...+||..+++ |..+.. +..
T Consensus 88 ~~~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~-~~~-- 143 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRA--------------ATFVRWSPNEDKFAVGSGAR-------VISVCYFEQENDWWVSKH-LKR-- 143 (377)
T ss_dssp -CCCCEEECCCCSSC--------------EEEEECCTTSSCCEEEESSS-------CEEECCC-----CCCCEE-ECS--
T ss_pred CceeeeeEecccCCc--------------eEEEEECCCCCEEEEEecCC-------eEEEEEECCcccceeeeE-eec--
Confidence 6 5433222111111 02222 22556666665443 23677877664 332221 110
Q ss_pred CCccCCCeEEEE-ECCeEEEEcCCCCCCCCeEEEEeCCCC
Q 011881 334 PARQAGTKLSVV-LDGELYAFDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 334 p~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~ 372 (475)
+.. .....++. -++++++.|+.+ ..+.+||..+.
T Consensus 144 ~h~-~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~ 178 (377)
T 3dwl_C 144 PLR-STILSLDWHPNNVLLAAGCAD----RKAYVLSAYVR 178 (377)
T ss_dssp SCC-SCEEEEEECTTSSEEEEEESS----SCEEEEEECCS
T ss_pred ccC-CCeEEEEEcCCCCEEEEEeCC----CEEEEEEEEec
Confidence 001 11111222 256777777643 46888887644
No 107
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=92.81 E-value=1.9 Score=45.90 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=40.0
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--C--CEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--N--DKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
+.+++.|+.++ .+.+||..+++|..+..+........++.+ + +.+++.|+. ...+.+||..+
T Consensus 67 ~~~l~s~s~Dg-----~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---------dg~I~vwdl~~ 132 (753)
T 3jro_A 67 GTILASCSYDG-----KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS---------DGKVSVVEFKE 132 (753)
T ss_dssp CSEEEEEETTS-----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET---------TSEEEEEECCS
T ss_pred CCEEEEEeCCC-----eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC---------CCcEEEEEeec
Confidence 56666776543 688889888887766544332333333333 3 667777764 25788999877
Q ss_pred C
Q 011881 256 D 256 (475)
Q Consensus 256 ~ 256 (475)
.
T Consensus 133 ~ 133 (753)
T 3jro_A 133 N 133 (753)
T ss_dssp S
T ss_pred C
Confidence 6
No 108
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=92.69 E-value=2.6 Score=41.10 Aligned_cols=64 Identities=11% Similarity=0.150 Sum_probs=37.0
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccce-eeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAY-CKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.+++.|+.++ .+.+||..++....+......... .++... ++++++.|+. ...+.+||....
T Consensus 176 ~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~---------dg~i~~wd~~~~ 241 (435)
T 4e54_B 176 NTNQFYASSMEG-----TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN---------VGNVILLNMDGK 241 (435)
T ss_dssp CTTEEEEECSSS-----CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS---------SSBEEEEESSSC
T ss_pred CCCEEEEEeCCC-----EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC---------CCcEeeeccCcc
Confidence 455666676543 577889888766554332221111 122222 6677777774 247888998654
No 109
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=92.69 E-value=4.9 Score=37.55 Aligned_cols=148 Identities=13% Similarity=0.090 Sum_probs=73.9
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
-++.+ +.|+.+ ..+.+||+.+.+-...-.-.... -.+++.. ++++++.|+. -..+.+||..+.
T Consensus 153 ~~~~l-~s~s~d-----~~i~~wd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~sg~~---------d~~v~~wd~~~~ 216 (340)
T 1got_B 153 DDNQI-VTSSGD-----TTCALWDIETGQQTTTFTGHTGD-VMSLSLAPDTRLFVSGAC---------DASAKLWDVREG 216 (340)
T ss_dssp ETTEE-EEEETT-----SCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEET---------TSCEEEEETTTC
T ss_pred CCCcE-EEEECC-----CcEEEEECCCCcEEEEEcCCCCc-eEEEEECCCCCEEEEEeC---------CCcEEEEECCCC
Confidence 35554 444433 35788898877643221111111 1122222 5677777774 257889998876
Q ss_pred CeEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCC
Q 011881 257 AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPA 335 (475)
Q Consensus 257 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~ 335 (475)
.-... +...... + .+++ .-++++++.|+.++. ..+||..+++-...-. . +.
T Consensus 217 ~~~~~--~~~h~~~-------------v-~~v~~~p~~~~l~s~s~d~~-------v~iwd~~~~~~~~~~~-~----~~ 268 (340)
T 1got_B 217 MCRQT--FTGHESD-------------I-NAICFFPNGNAFATGSDDAT-------CRLFDLRADQELMTYS-H----DN 268 (340)
T ss_dssp SEEEE--ECCCSSC-------------E-EEEEECTTSSEEEEEETTSC-------EEEEETTTTEEEEEEC-C----TT
T ss_pred eeEEE--EcCCcCC-------------E-EEEEEcCCCCEEEEEcCCCc-------EEEEECCCCcEEEEEc-c----CC
Confidence 53221 1100000 0 2222 235677777775542 3788887765322111 0 01
Q ss_pred ccCCCeEE-EEECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 336 RQAGTKLS-VVLDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 336 ~~~~~~~~-~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
...+...+ ...++++++.|+.+ ..+.+||..+.+
T Consensus 269 ~~~~v~~~~~s~~g~~l~~g~~d----~~i~vwd~~~~~ 303 (340)
T 1got_B 269 IICGITSVSFSKSGRLLLAGYDD----FNCNVWDALKAD 303 (340)
T ss_dssp CCSCEEEEEECTTSSEEEEEETT----SEEEEEETTTCC
T ss_pred cccceEEEEECCCCCEEEEECCC----CeEEEEEcccCc
Confidence 11111112 22367788877743 579999987654
No 110
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.67 E-value=4.5 Score=42.81 Aligned_cols=147 Identities=7% Similarity=0.015 Sum_probs=72.3
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCC-
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD- 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~- 256 (475)
++..+++|+.+ ..+.+||..+.+....-.-.... -.+++.. +++..+.|+. ...+.+||..++
T Consensus 66 ~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~---------dg~i~vw~~~~~~ 130 (814)
T 3mkq_A 66 RKNWIIVGSDD-----FRIRVFNYNTGEKVVDFEAHPDY-IRSIAVHPTKPYVLSGSD---------DLTVKLWNWENNW 130 (814)
T ss_dssp GGTEEEEEETT-----SEEEEEETTTCCEEEEEECCSSC-EEEEEECSSSSEEEEEET---------TSEEEEEEGGGTS
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEEecCCCC-EEEEEEeCCCCEEEEEcC---------CCEEEEEECCCCc
Confidence 45555666543 37888998887654321111111 1122222 4555556653 257889998775
Q ss_pred CeEecCCCCccccCCCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCceEE-cCCCCCCCC
Q 011881 257 AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE-MPIGMGEGW 333 (475)
Q Consensus 257 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~ 333 (475)
..... +...... ..+++.. ++.+++.|+.++ ...+||..+.+-.. +....
T Consensus 131 ~~~~~--~~~~~~~--------------v~~~~~~p~~~~~l~~~~~dg-------~v~vwd~~~~~~~~~~~~~~---- 183 (814)
T 3mkq_A 131 ALEQT--FEGHEHF--------------VMCVAFNPKDPSTFASGCLDR-------TVKVWSLGQSTPNFTLTTGQ---- 183 (814)
T ss_dssp EEEEE--EECCSSC--------------EEEEEEETTEEEEEEEEETTS-------EEEEEETTCSSCSEEEECCC----
T ss_pred eEEEE--EcCCCCc--------------EEEEEEEcCCCCEEEEEeCCC-------eEEEEECCCCcceeEEecCC----
Confidence 22211 1100011 0223332 456777666543 23678876554322 11100
Q ss_pred CCccCCCeEEEEE---CCeEEEEcCCCCCCCCeEEEEeCCCCcE
Q 011881 334 PARQAGTKLSVVL---DGELYAFDPSSSLNSAKIKVYDQKEDTW 374 (475)
Q Consensus 334 p~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~v~~yd~~~~~W 374 (475)
. .....++.. ++.+++.|+.+ ..+.+||..+.+-
T Consensus 184 --~-~~v~~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~ 220 (814)
T 3mkq_A 184 --E-RGVNYVDYYPLPDKPYMITASDD----LTIKIWDYQTKSC 220 (814)
T ss_dssp --T-TCCCEEEECCSTTCCEEEEECTT----SEEEEEETTTTEE
T ss_pred --C-CCEEEEEEEECCCCCEEEEEeCC----CEEEEEECCCCcE
Confidence 0 111112222 67777777643 5799999887653
No 111
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=92.64 E-value=3.6 Score=38.11 Aligned_cols=155 Identities=10% Similarity=0.066 Sum_probs=80.7
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
-++.||+.+..+ ..+++||+.+.+.+.+...+. ..-.+++.. ++++|+..... ......+.+||+.+.
T Consensus 54 ~~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~-~~~~~i~~~~dg~l~v~~~~~-----~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 54 RQGQLFLLDVFE-----GNIFKINPETKEIKRPFVSHK-ANPAAIKIHKDGRLFVCYLGD-----FKSTGGIFAATENGD 122 (333)
T ss_dssp TTSCEEEEETTT-----CEEEEECTTTCCEEEEEECSS-SSEEEEEECTTSCEEEEECTT-----SSSCCEEEEECTTSC
T ss_pred CCCCEEEEECCC-----CEEEEEeCCCCcEEEEeeCCC-CCcceEEECCCCcEEEEeCCC-----CCCCceEEEEeCCCC
Confidence 367788876432 479999999988776532111 112233332 67888875321 001257899999988
Q ss_pred CeEec-CCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCC
Q 011881 257 AWSEV-PSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWP 334 (475)
Q Consensus 257 ~W~~~-~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p 334 (475)
.-+.+ ...... .. + ..++ .-+|++|+....... .....+.++||+++++...+.....
T Consensus 123 ~~~~~~~~~~~~-~~--~------------~~i~~d~~g~l~v~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~---- 182 (333)
T 2dg1_A 123 NLQDIIEDLSTA-YC--I------------DDMVFDSKGGFYFTDFRGYS-TNPLGGVYYVSPDFRTVTPIIQNIS---- 182 (333)
T ss_dssp SCEEEECSSSSC-CC--E------------EEEEECTTSCEEEEECCCBT-TBCCEEEEEECTTSCCEEEEEEEES----
T ss_pred EEEEEEccCccC-Cc--c------------cceEECCCCCEEEEeccccc-cCCCceEEEEeCCCCEEEEeecCCC----
Confidence 76532 211111 11 0 2222 236788885421100 0001234788888777765532110
Q ss_pred CccCCCeEEEE-ECC-eEEEEcCCCCCCCCeEEEEeCCC
Q 011881 335 ARQAGTKLSVV-LDG-ELYAFDPSSSLNSAKIKVYDQKE 371 (475)
Q Consensus 335 ~~~~~~~~~~~-~~~-~lyv~GG~~~~~~~~v~~yd~~~ 371 (475)
.. .. .+. -++ .||+.... .+.|++||+.+
T Consensus 183 ~~---~~-i~~~~dg~~l~v~~~~----~~~i~~~d~~~ 213 (333)
T 2dg1_A 183 VA---NG-IALSTDEKVLWVTETT----ANRLHRIALED 213 (333)
T ss_dssp SE---EE-EEECTTSSEEEEEEGG----GTEEEEEEECT
T ss_pred cc---cc-eEECCCCCEEEEEeCC----CCeEEEEEecC
Confidence 01 11 222 344 48877531 25799999864
No 112
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=92.57 E-value=4.3 Score=41.99 Aligned_cols=154 Identities=13% Similarity=0.053 Sum_probs=81.8
Q ss_pred cceEEEEeCC-CC---cEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccc
Q 011881 194 MRCVRRYDPI-AN---TWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSR 268 (475)
Q Consensus 194 ~~~~~~yd~~-t~---~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r 268 (475)
..+++++|.. +. +.+.+..-.. ......+.. ++++|+.+..+ + ...++.+|+.+.+++.+.+.....
T Consensus 216 ~~~i~~~d~~~~g~~~~~~~l~~~~~-~~~~~~~~spdg~l~~~~~~~----~---~~~l~~~~~~~~~~~~l~~~~~~~ 287 (662)
T 3azo_A 216 GTELKTARVTEDGRFADTRTLLGGPE-EAIAQAEWAPDGSLIVATDRT----G---WWNLHRVDPATGAATQLCRREEEF 287 (662)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEETT-BCEEEEEECTTSCEEEEECTT----S---SCEEEEECTTTCCEEESSCCSSBS
T ss_pred CcEEEEEEECCCCcccccEEeCCCCC-ceEcceEECCCCeEEEEECCC----C---CeEEEEEECCCCceeecccccccc
Confidence 3689999998 56 4444422111 111222222 67777766431 1 347999999999998876543221
Q ss_pred cCCCCccccccccccceeeEEEe-CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEE-EEE
Q 011881 269 AQGLPNAFFADMLKPIATGMTSY-MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLS-VVL 346 (475)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~-~~~ 346 (475)
.. + .|. .....++.. ++++++.+.. +. ...+.+|+.+++...+.... .. ...+ ...
T Consensus 288 ~~--p-~w~-----~~~~~~~~~~~~~~~~~~~~-~~-----~~l~~~d~~~~~~~~l~~~~------~~--~~~~~s~~ 345 (662)
T 3azo_A 288 AG--P-LWT-----PGMRWFAPLANGLIAVVHGK-GA-----AVLGILDPESGELVDAAGPW------TE--WAATLTVS 345 (662)
T ss_dssp SC--C-CCS-----TTCCSEEECTTSCEEEEEBS-SS-----CEEEEEETTTTEEEECCSSC------CE--EEEEEEEE
T ss_pred cC--c-ccc-----ccCceEeEeCCCEEEEEEEc-Cc-----cEEEEEECCCCcEEEecCCC------Ce--EEEEEecC
Confidence 10 0 000 000223333 6777766543 22 22366798888877765421 11 1112 344
Q ss_pred CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 347 DGELYAFDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 347 ~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
++.+++..+... ....++.+|+.+.+.+.+.
T Consensus 346 ~~~~~~~~~~~~-~~~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 346 GTRAVGVAASPR-TAYEVVELDTVTGRARTIG 376 (662)
T ss_dssp TTEEEEEEEETT-EEEEEEEEETTTCCEEEEE
T ss_pred CCEEEEEEcCCC-CCCEEEEEECCCCceEEee
Confidence 566666543221 2247889999888887763
No 113
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=92.53 E-value=12 Score=39.23 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=72.5
Q ss_pred eEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCCc--------cceeeeEEECCEEEEEeceecCCCCcc
Q 011881 174 AIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSVG--------RAYCKTGILNDKLYVVGGVSRARGGLT 243 (475)
Q Consensus 174 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~--------R~~~~~~~~~~~iyv~GG~~~~~~~~~ 243 (475)
+.++.++.||+... ...++.+|..|.+ |+.-...+.. ....+.++.+++||+...
T Consensus 72 ~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~--------- 136 (677)
T 1kb0_A 72 TPVVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW--------- 136 (677)
T ss_dssp CCEEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT---------
T ss_pred CCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC---------
Confidence 34567999999864 2578999998875 8875443211 112345667899998643
Q ss_pred cCCeEEEEeCCCCC--eEecCC-CCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCC
Q 011881 244 PLQSAEVFDPTTDA--WSEVPS-MPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTN 320 (475)
Q Consensus 244 ~~~~~~~yd~~t~~--W~~~~~-~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 320 (475)
...+..+|.+|++ |+.-.. -+...... ..+.++.++.+|+..+..... .+-....||.+++
T Consensus 137 -dg~l~alD~~tG~~~W~~~~~~~~~~~~~~-------------~~~p~v~~~~v~v~~~~~~~~--~~g~v~a~D~~tG 200 (677)
T 1kb0_A 137 -DGRLIALDAATGKEVWHQNTFEGQKGSLTI-------------TGAPRVFKGKVIIGNGGAEYG--VRGYITAYDAETG 200 (677)
T ss_dssp -TSEEEEEETTTCCEEEEEETTTTCCSSCBC-------------CSCCEEETTEEEECCBCTTTC--CBCEEEEEETTTC
T ss_pred -CCEEEEEECCCCCEEeeecCCcCcCcCccc-------------ccCcEEECCEEEEEecccccC--CCCEEEEEECCCC
Confidence 2579999998875 886432 11100110 023456789998854321110 0112378999887
Q ss_pred c--eEEc
Q 011881 321 S--WVEM 325 (475)
Q Consensus 321 ~--W~~~ 325 (475)
+ |+.-
T Consensus 201 ~~~W~~~ 207 (677)
T 1kb0_A 201 ERKWRWF 207 (677)
T ss_dssp CEEEEEE
T ss_pred cEEEEec
Confidence 6 8764
No 114
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=92.48 E-value=7 Score=38.72 Aligned_cols=94 Identities=17% Similarity=0.265 Sum_probs=54.2
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCc--E-EeC----CCCCCccceeeeEE-------ECCEEEEEeceecCCCCccc
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANT--W-NEA----TSMSVGRAYCKTGI-------LNDKLYVVGGVSRARGGLTP 244 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W-~~~----~~~p~~R~~~~~~~-------~~~~iyv~GG~~~~~~~~~~ 244 (475)
++++|+|=| +.+|+|+-..-. . +.+ +.+|. . --+++ .++++|+|-|
T Consensus 107 ~g~~yfFkG-------~~yW~~~~~~~~~GYPk~I~~~fpGlp~-~--IDAA~~~~~~~~~~~~~yfFkG---------- 166 (460)
T 1qhu_A 107 HTSVYLIKG-------DKVWVYTSEKNEKVYPKSLQDEFPGIPF-P--LDAAVECHRGECQDEGILFFQG---------- 166 (460)
T ss_dssp TTEEEEEET-------TEEEEECC-------CEEHHHHSTTCCS-S--CCEEEEECBBTBSSSEEEEEET----------
T ss_pred CCcEEEEec-------cEEEEEeCCcccCCCCeEhhhccCCCCC-C--eeEEEECCccCCCCCeEEEEec----------
Confidence 589999976 478888643211 0 111 22332 1 22332 2688999987
Q ss_pred CCeEEEEeCCCCCeEec--CCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCC
Q 011881 245 LQSAEVFDPTTDAWSEV--PSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTN 320 (475)
Q Consensus 245 ~~~~~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 320 (475)
+..++||..+++...- +.+|. . -++...+|++|+|-|. .-++||..++
T Consensus 167 -~~yw~yd~~~~~~~~~~w~gi~~--i----------------DAA~~~~g~~YfFkG~---------~y~rfd~~~~ 216 (460)
T 1qhu_A 167 -NRKWFWDLTTGTKKERSWPAVGN--C----------------TSALRWLGRYYCFQGN---------QFLRFNPVSG 216 (460)
T ss_dssp -TEEEEEETTTTEEEEECCTTSCC--C----------------SEEEEETTEEEEEETT---------EEEEECTTTC
T ss_pred -ccEEEEecccceeecccCCCCCc--c----------------chheeeCCceEEEECC---------EEEEEcCccC
Confidence 3679999987754421 22221 1 3555667999998773 2378887654
No 115
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=92.42 E-value=7.8 Score=37.00 Aligned_cols=104 Identities=8% Similarity=-0.064 Sum_probs=51.7
Q ss_pred CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEE-ECCe-EEEEcCCCCCCCCeEEEEeC
Q 011881 292 MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVV-LDGE-LYAFDPSSSLNSAKIKVYDQ 369 (475)
Q Consensus 292 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~-~~~~-lyv~GG~~~~~~~~v~~yd~ 369 (475)
++++.+.|+.++ ...+||..+.+-...-... .......++. -++. +++.|+.+ ..+.+||.
T Consensus 258 ~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~g~~d----g~i~vwd~ 320 (420)
T 3vl1_A 258 YGKYVIAGHVSG-------VITVHNVFSKEQTIQLPSK------FTCSCNSLTVDGNNANYIYAGYEN----GMLAQWDL 320 (420)
T ss_dssp TTEEEEEEETTS-------CEEEEETTTCCEEEEECCT------TSSCEEEEEECSSCTTEEEEEETT----SEEEEEET
T ss_pred CCCEEEEEcCCC-------eEEEEECCCCceeEEcccc------cCCCceeEEEeCCCCCEEEEEeCC----CeEEEEEc
Confidence 566777666543 2378998876533221100 0011111222 2454 77777643 58999999
Q ss_pred CCCcE--EEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCCC
Q 011881 370 KEDTW--KVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPRD 422 (475)
Q Consensus 370 ~~~~W--~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~~ 422 (475)
.+.+- ..+.. ........+...++++++.|+..+. +...|+..
T Consensus 321 ~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~l~s~~~d~~---v~iw~~~~ 365 (420)
T 3vl1_A 321 RSPECPVGEFLI-------NEGTPINNVYFAAGALFVSSGFDTS---IKLDIISD 365 (420)
T ss_dssp TCTTSCSEEEEE-------STTSCEEEEEEETTEEEEEETTTEE---EEEEEECC
T ss_pred CCCcCchhhhhc-------cCCCCceEEEeCCCCEEEEecCCcc---EEEEeccC
Confidence 87532 22210 1112223444557887777764432 44445443
No 116
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=92.24 E-value=1 Score=42.61 Aligned_cols=156 Identities=15% Similarity=0.238 Sum_probs=80.3
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCcc-ceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGR-AYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
-++.+++.||.++ .+.+||..+++|.....+.... .....+.+ ++++++.|+.+ ..+.+||..
T Consensus 26 p~g~~las~~~D~-----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D---------~~v~iw~~~ 91 (345)
T 3fm0_A 26 PAGTLLASCGGDR-----RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD---------ATTCIWKKN 91 (345)
T ss_dssp TTSSCEEEEETTS-----CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT---------SCEEEEEEC
T ss_pred CCCCEEEEEcCCC-----eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC---------CcEEEEEcc
Confidence 3567777777543 5777888888775432221111 11122222 56777777642 467788887
Q ss_pred CCCeEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCc-eEEcCCCCCCC
Q 011881 255 TDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNS-WVEMPIGMGEG 332 (475)
Q Consensus 255 t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~ 332 (475)
++.+..+..+...... + .+++ .-++++++.|+.++. ..+||..+.. +..+.. +..
T Consensus 92 ~~~~~~~~~~~~h~~~-------------v-~~v~~sp~~~~l~s~s~D~~-------v~iwd~~~~~~~~~~~~-~~~- 148 (345)
T 3fm0_A 92 QDDFECVTTLEGHENE-------------V-KSVAWAPSGNLLATCSRDKS-------VWVWEVDEEDEYECVSV-LNS- 148 (345)
T ss_dssp CC-EEEEEEECCCSSC-------------E-EEEEECTTSSEEEEEETTSC-------EEEEEECTTSCEEEEEE-ECC-
T ss_pred CCCeEEEEEccCCCCC-------------c-eEEEEeCCCCEEEEEECCCe-------EEEEECCCCCCeEEEEE-ecC-
Confidence 7766544322211111 0 2222 235677777765542 3677776542 332221 100
Q ss_pred CCCccCCCeEEE-EECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEc
Q 011881 333 WPARQAGTKLSV-VLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVV 377 (475)
Q Consensus 333 ~p~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 377 (475)
.......++ .-++++++.|+.+ ..+.+||..+..|..+
T Consensus 149 ---h~~~v~~~~~~p~~~~l~s~s~d----~~i~~w~~~~~~~~~~ 187 (345)
T 3fm0_A 149 ---HTQDVKHVVWHPSQELLASASYD----DTVKLYREEEDDWVCC 187 (345)
T ss_dssp ---CCSCEEEEEECSSSSCEEEEETT----SCEEEEEEETTEEEEE
T ss_pred ---cCCCeEEEEECCCCCEEEEEeCC----CcEEEEEecCCCEEEE
Confidence 001111122 2356677777643 4788999988888754
No 117
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=92.17 E-value=3.4 Score=37.83 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=39.7
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCCcEEeC-CCCCCc--ccee-eeEEE-CCEEEEEeceecC------CCCcccCCeE
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIANTWNEA-TSMSVG--RAYC-KTGIL-NDKLYVVGGVSRA------RGGLTPLQSA 248 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~-~~~p~~--R~~~-~~~~~-~~~iyv~GG~~~~------~~~~~~~~~~ 248 (475)
+.||+.... +.+++||+. ++.+.+ ...... .... .++.. ++++|+....... .........+
T Consensus 83 g~l~v~~~~------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 83 NQLFVADMR------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp SEEEEEETT------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred CcEEEEECC------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeE
Confidence 788887531 368999998 777665 332211 1112 23332 6788886542100 0000123578
Q ss_pred EEEeCCCCCeEec
Q 011881 249 EVFDPTTDAWSEV 261 (475)
Q Consensus 249 ~~yd~~t~~W~~~ 261 (475)
++||+. .+...+
T Consensus 156 ~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 156 YCFTTD-GQMIQV 167 (314)
T ss_dssp EEECTT-SCEEEE
T ss_pred EEECCC-CCEEEe
Confidence 899987 555443
No 118
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=92.07 E-value=5.7 Score=34.67 Aligned_cols=136 Identities=11% Similarity=0.062 Sum_probs=70.6
Q ss_pred eeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEe--c----CCCCccccCCCCccccccccccceeeEEEe--C
Q 011881 221 KTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSE--V----PSMPFSRAQGLPNAFFADMLKPIATGMTSY--M 292 (475)
Q Consensus 221 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~--~----~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~ 292 (475)
+++..++++|+|=| ..+++++.....+.. + +.+|.. . -++... +
T Consensus 28 Ai~~~~g~~y~Fkg-----------~~~wr~~~~~~~~~p~~I~~~wp~Lp~~-i----------------DAa~~~~~~ 79 (207)
T 1pex_A 28 AITSLRGETMIFKD-----------RFFWRLHPQQVDAELFLTKSFWPELPNR-I----------------DAAYEHPSH 79 (207)
T ss_dssp EEEEETTEEEEEET-----------TEEEEECSSSSCCEEEEHHHHCTTSCSS-C----------------CEEEEETTT
T ss_pred EEEeCCCcEEEEEC-----------CEEEEEeCCCcCCCceehhHhccCCCCC-c----------------cEEEEeccC
Confidence 34457999999976 356777665433321 1 233321 1 233333 6
Q ss_pred CEEEEeccCCCCCceeccceEEEeCCCCce---EEcCCCCCCCCCCccCCCeEEEEE--CCeEEEEcCCCCCCCCeEEEE
Q 011881 293 GRLCVPQSLYSWPFFVDVGGEIYDPDTNSW---VEMPIGMGEGWPARQAGTKLSVVL--DGELYAFDPSSSLNSAKIKVY 367 (475)
Q Consensus 293 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W---~~~~~~~~~~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~y 367 (475)
+++|+|-|.. .++|+..+-.- ..+.. .++|......-++... ++++|+|-| +..|.|
T Consensus 80 ~~iyfFkG~~---------~w~~~~~~~~~gyPk~I~~---~GlP~~~~~IDAA~~~~~~gk~yfFkG------~~ywr~ 141 (207)
T 1pex_A 80 DLIFIFRGRK---------FWALNGYDILEGYPKKISE---LGLPKEVKKISAAVHFEDTGKTLLFSG------NQVWRY 141 (207)
T ss_dssp TEEEEEETTE---------EEEESTTCCCTTCSEESTT---TTCCTTCCCCCEEEECTTTSEEEEEET------TEEEEE
T ss_pred CcEEEEccCE---------EEEEeCCeeccCCceeccc---cCCCCCCccccEEEEeCCCCEEEEEeC------CEEEEE
Confidence 9999986622 26665322110 11211 1234321122223333 489999977 689999
Q ss_pred eCCCCcEEEcCCcCc--c----ccCCCCCCCeEEEEeCCeEEEEee
Q 011881 368 DQKEDTWKVVIGKVP--I----RDFADSESPYLLSAFHGKLHVLTK 407 (475)
Q Consensus 368 d~~~~~W~~v~~~~p--~----~~~~~~r~~~~~~~~~~~l~v~GG 407 (475)
|..+++ +...-| . +.++. + .-++...+|++|+|-|
T Consensus 142 d~~~~~---~d~gyPr~i~~~~~Gip~-~-iDaAf~~~g~~YfFkg 182 (207)
T 1pex_A 142 DDTNHI---MDKDYPRLIEEDFPGIGD-K-VDAVYEKNGYIYFFNG 182 (207)
T ss_dssp ETTTTE---ECSSCCCBHHHHSTTSCS-C-CSEEEEETTEEEEEET
T ss_pred eCcCcc---ccCCCCccHHHcCCCCCC-C-ccEEEEcCCcEEEEEC
Confidence 987753 221111 1 12222 2 2344456999999966
No 119
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=92.00 E-value=1.6 Score=37.87 Aligned_cols=137 Identities=12% Similarity=0.124 Sum_probs=71.3
Q ss_pred eeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCC--CeEe--c----CCCCccccCCCCccccccccccceeeEEEe-
Q 011881 221 KTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTD--AWSE--V----PSMPFSRAQGLPNAFFADMLKPIATGMTSY- 291 (475)
Q Consensus 221 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~--~W~~--~----~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~- 291 (475)
+++..++++|+|=| +.+++++.... .... + +.+|... -++...
T Consensus 11 Ai~~~~g~~yfFkg-----------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~I-----------------DAa~~~~ 62 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-----------GKYWRFSEGRGSRPQGPFLIADKWPALPRKL-----------------DSVFEEP 62 (195)
T ss_dssp EEEEETTEEEEEET-----------TEEEEECCSSSCCCEEEEEHHHHCTTSCSSC-----------------SEEEECT
T ss_pred EEEEeCCEEEEEEC-----------CEEEEEECCccccCCCcEEhhhccCCCCCCc-----------------cEEEEEC
Confidence 34557999999977 36777776542 2211 1 2333211 233333
Q ss_pred -CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCC-CCCCccCCCeEEEE-ECCeEEEEcCCCCCCCCeEEEEe
Q 011881 292 -MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGE-GWPARQAGTKLSVV-LDGELYAFDPSSSLNSAKIKVYD 368 (475)
Q Consensus 292 -~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-~~p~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd 368 (475)
++++|+|-|.. .++|+..+ -.. +..+.. ++|......-++.. .++++|+|-| +..|.||
T Consensus 63 ~~~~~yfFkG~~---------yw~~~~~~--~~~-Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg------~~ywr~d 124 (195)
T 1itv_A 63 LSKKLFFFSGRQ---------VWVYTGAS--VLG-PRRLDKLGLGADVAQVTGALRSGRGKMLLFSG------RRLWRFD 124 (195)
T ss_dssp TTCCEEEEETTE---------EEEEETTE--EEE-EEEGGGGTCCTTCCCCCEEEECSTTEEEEEET------TEEEEEE
T ss_pred CCCeEEEEeCCE---------EEEEcCCc--cCC-CEEeeecccCCCccceeEEEEcCCCeEEEEeC------CEEEEEe
Confidence 68899987632 36676432 111 111111 23332111221222 3689999976 5899999
Q ss_pred CCCCcEEEcCCcCc------cccCCCCCCCeEEEEeCCeEEEEeec
Q 011881 369 QKEDTWKVVIGKVP------IRDFADSESPYLLSAFHGKLHVLTKD 408 (475)
Q Consensus 369 ~~~~~W~~v~~~~p------~~~~~~~r~~~~~~~~~~~l~v~GG~ 408 (475)
..+++=. ..-| ...+| ...-++...+|++|+|-|.
T Consensus 125 ~~~~~~~---~gyPr~i~~~w~Gvp--~~idaa~~~~g~~Yffkg~ 165 (195)
T 1itv_A 125 VKAQMVD---PRSASEVDRMFPGVP--LDTHDVFQFREKAYFCQDR 165 (195)
T ss_dssp TTTTEEC---GGGCEEHHHHSTTSC--SSCSEEEEETTEEEEEETT
T ss_pred CCccccc---CCCccChhhcCCCCC--CCCCEEEEeCCeEEEEeCC
Confidence 8876421 1111 11222 2233555567999999763
No 120
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=91.94 E-value=3.6 Score=43.60 Aligned_cols=139 Identities=12% Similarity=0.085 Sum_probs=77.3
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCc-cceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVG-RAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
++.|+++||.. .-+.+||+.+++++....-... .....+... ++.|++... .-+.+||+.+
T Consensus 482 ~g~lWi~~~t~-----~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~-----------~Gl~~~~~~~ 545 (758)
T 3ott_A 482 EGNVWVLLYNN-----KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFH-----------GGVMRINPKD 545 (758)
T ss_dssp TSCEEEEETTC-----SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEET-----------TEEEEECC--
T ss_pred CCCEEEEccCC-----CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEec-----------CceEEEecCC
Confidence 57799865543 3488999999998876421111 111222222 577886421 3589999999
Q ss_pred CCeEecC--CCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCC
Q 011881 256 DAWSEVP--SMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGW 333 (475)
Q Consensus 256 ~~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~ 333 (475)
++++... .+|... ..++..-+|.|++... .|..+||+++.+......
T Consensus 546 ~~~~~~~~~gl~~~~----------------i~~i~~~~g~lWi~t~---------~Gl~~~~~~~~~~~~~~~------ 594 (758)
T 3ott_A 546 ESQQSISFGSFSNNE----------------ILSMTCVKNSIWVSTT---------NGLWIIDRKTMDARQQNM------ 594 (758)
T ss_dssp CCCCBCCCCC---CC----------------EEEEEEETTEEEEEES---------SCEEEEETTTCCEEEC--------
T ss_pred CceEEecccCCCccc----------------eEEEEECCCCEEEECC---------CCeEEEcCCCceeEEecC------
Confidence 8877653 222111 1444556899998542 455899999998876432
Q ss_pred CCccCCCeEEEE-ECCeEEEEcCCCCCCCCeEEEEeCCC
Q 011881 334 PARQAGTKLSVV-LDGELYAFDPSSSLNSAKIKVYDQKE 371 (475)
Q Consensus 334 p~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~ 371 (475)
|..... .++.. -+|.||+- |. +.+..|||+.
T Consensus 595 ~~~~~~-~~~~~~~~G~l~fG-~~-----~Gl~~f~p~~ 626 (758)
T 3ott_A 595 TNKRFT-SLLFDPKEDCVYLG-GA-----DGFGISHSNL 626 (758)
T ss_dssp CCCCCS-EEEEETTTTEEEEE-CB-----SEEEEEEC--
T ss_pred CCCcee-eeEEECCCCcEEEe-cC-----CceEEEChhh
Confidence 111111 21222 26777764 42 4688899874
No 121
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=91.86 E-value=9.5 Score=36.75 Aligned_cols=64 Identities=11% Similarity=0.039 Sum_probs=35.5
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.+++.|+.++ .+.+||..+.+-.. .+........++.+ ++..++.|+. -..+.+||..+.
T Consensus 161 ~~~~l~sgs~D~-----~i~iwd~~~~~~~~--~~~~h~~~V~~v~~~p~~~~l~s~s~---------D~~i~~wd~~~~ 224 (410)
T 1vyh_C 161 SGKLLASCSADM-----TIKLWDFQGFECIR--TMHGHDHNVSSVSIMPNGDHIVSASR---------DKTIKMWEVQTG 224 (410)
T ss_dssp TSSEEEEEETTS-----CCCEEETTSSCEEE--CCCCCSSCEEEEEECSSSSEEEEEET---------TSEEEEEETTTC
T ss_pred CCCEEEEEeCCC-----eEEEEeCCCCceeE--EEcCCCCCEEEEEEeCCCCEEEEEeC---------CCeEEEEECCCC
Confidence 566777777654 45677776654322 22211111222223 5566667764 257899999887
Q ss_pred Ce
Q 011881 257 AW 258 (475)
Q Consensus 257 ~W 258 (475)
.-
T Consensus 225 ~~ 226 (410)
T 1vyh_C 225 YC 226 (410)
T ss_dssp CE
T ss_pred cE
Confidence 53
No 122
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=91.79 E-value=6.7 Score=37.07 Aligned_cols=144 Identities=9% Similarity=-0.031 Sum_probs=75.8
Q ss_pred EEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCcccee-eeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 181 CLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYC-KTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 181 ~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
.+++.|+.+ ..+.+||..+.+....-......... +++.. ++.+++.|+. ...+.+||..+..
T Consensus 87 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~ 152 (383)
T 3ei3_B 87 TTVAVGSKG-----GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI---------RGATTLRDFSGSV 152 (383)
T ss_dssp TEEEEEEBT-----SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET---------TTEEEEEETTSCE
T ss_pred CEEEEEcCC-----CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC---------CCEEEEEECCCCc
Confidence 566777654 36888999887766543321111222 23333 3466666664 2578899998766
Q ss_pred eEecCCCCccccCCCCccccccccccceeeE-EEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCc
Q 011881 258 WSEVPSMPFSRAQGLPNAFFADMLKPIATGM-TSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPAR 336 (475)
Q Consensus 258 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~ 336 (475)
...+......... + .++ ..-++++++.|+.++ ....||+....-..+...
T Consensus 153 ~~~~~~~~~~~~~-------------v-~~~~~~~~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~h-------- 203 (383)
T 3ei3_B 153 IQVFAKTDSWDYW-------------Y-CCVDVSVSRQMLATGDSTG-------RLLLLGLDGHEIFKEKLH-------- 203 (383)
T ss_dssp EEEEECCCCSSCC-------------E-EEEEEETTTTEEEEEETTS-------EEEEEETTSCEEEEEECS--------
T ss_pred eEEEeccCCCCCC-------------e-EEEEECCCCCEEEEECCCC-------CEEEEECCCCEEEEeccC--------
Confidence 6554332211111 0 222 233566666666543 237788854444333321
Q ss_pred cCCCeEEEE-ECCe-EEEEcCCCCCCCCeEEEEeCCC
Q 011881 337 QAGTKLSVV-LDGE-LYAFDPSSSLNSAKIKVYDQKE 371 (475)
Q Consensus 337 ~~~~~~~~~-~~~~-lyv~GG~~~~~~~~v~~yd~~~ 371 (475)
......++. -++. +++.|+.+ ..+.+||..+
T Consensus 204 ~~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~ 236 (383)
T 3ei3_B 204 KAKVTHAEFNPRCDWLMATSSVD----ATVKLWDLRN 236 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEETT----SEEEEEEGGG
T ss_pred CCcEEEEEECCCCCCEEEEEeCC----CEEEEEeCCC
Confidence 011111222 2444 77777643 5799999876
No 123
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=91.70 E-value=0.83 Score=43.40 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=29.6
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCc-EEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANT-WNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
++.+++.|+.++ .+.+||..+.+ |.....+.........+.+ ++++++.|+. ...+.+||..+
T Consensus 66 ~~~~l~s~s~d~-----~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~ 131 (377)
T 3dwl_C 66 KSNRIVTCSQDR-----NAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG---------ARVISVCYFEQ 131 (377)
T ss_dssp TTCCEEEEETTS-----SEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEES---------SSCEEECCC--
T ss_pred CCCEEEEEeCCC-----eEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEec---------CCeEEEEEECC
Confidence 456666666543 57888888776 5443332222222223333 5666777764 24688888887
Q ss_pred CC
Q 011881 256 DA 257 (475)
Q Consensus 256 ~~ 257 (475)
.+
T Consensus 132 ~~ 133 (377)
T 3dwl_C 132 EN 133 (377)
T ss_dssp --
T ss_pred cc
Confidence 65
No 124
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=91.58 E-value=15 Score=38.37 Aligned_cols=121 Identities=18% Similarity=0.183 Sum_probs=71.6
Q ss_pred eEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCCcc--------ceeeeEEECCEEEEEeceecCCCCcc
Q 011881 174 AIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSVGR--------AYCKTGILNDKLYVVGGVSRARGGLT 243 (475)
Q Consensus 174 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~R--------~~~~~~~~~~~iyv~GG~~~~~~~~~ 243 (475)
+.++.++.||+... ...++.+|..|.+ |+.-...+... ...+.++.+++||+...
T Consensus 61 ~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--------- 125 (668)
T 1kv9_A 61 TPLFHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL--------- 125 (668)
T ss_dssp CCEEETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---------
T ss_pred CCEEECCEEEEECC------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC---------
Confidence 44578999999864 2478999988775 88754332110 12234567899988643
Q ss_pred cCCeEEEEeCCCCC--eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCc
Q 011881 244 PLQSAEVFDPTTDA--WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNS 321 (475)
Q Consensus 244 ~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 321 (475)
...+..+|.+|.+ |+.-..-+...... ..+-++.++.+|+..+..... .+-....||+++++
T Consensus 126 -dg~l~alD~~tG~~~W~~~~~~~~~~~~~-------------~~~P~v~~~~v~vg~~~~~~~--~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 126 -DGRLIALDAKTGKAIWSQQTTDPAKPYSI-------------TGAPRVVKGKVIIGNGGAEYG--VRGFVSAYDADTGK 189 (668)
T ss_dssp -TSEEEEEETTTCCEEEEEECSCTTSSCBC-------------CSCCEEETTEEEECCBCTTTC--CBCEEEEEETTTCC
T ss_pred -CCEEEEEECCCCCEeeeeccCCCCCccee-------------cCCCEEECCEEEEeCCCCCcC--CCCEEEEEECCCCc
Confidence 2579999998876 88643211111110 023356789988853321100 00123789998876
Q ss_pred --eEEc
Q 011881 322 --WVEM 325 (475)
Q Consensus 322 --W~~~ 325 (475)
|+.-
T Consensus 190 ~~W~~~ 195 (668)
T 1kv9_A 190 LAWRFY 195 (668)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 8763
No 125
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=91.54 E-value=5.1 Score=37.17 Aligned_cols=141 Identities=13% Similarity=0.046 Sum_probs=71.2
Q ss_pred cceEEEEeCCCCcEEeCC-CCCCccceeeeEEE-CC-EEEEEeceecCCCCcccCCeEEEEeCCCC---CeEecCCCCcc
Q 011881 194 MRCVRRYDPIANTWNEAT-SMSVGRAYCKTGIL-ND-KLYVVGGVSRARGGLTPLQSAEVFDPTTD---AWSEVPSMPFS 267 (475)
Q Consensus 194 ~~~~~~yd~~t~~W~~~~-~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~t~---~W~~~~~~p~~ 267 (475)
...+++||+.+.+.+.+. .+..+ ..++.. ++ .|||.-.. .+.+.+||+... ..+.+..++.|
T Consensus 164 ~g~v~~~d~~~~~~~~~~~~~~~p---~gia~~~dg~~lyv~d~~---------~~~I~~~~~~~~~~~~~~~~~~~~gP 231 (322)
T 2fp8_A 164 TGRLIKYDPSTKETTLLLKELHVP---GGAEVSADSSFVLVAEFL---------SHQIVKYWLEGPKKGTAEVLVKIPNP 231 (322)
T ss_dssp CEEEEEEETTTTEEEEEEEEESCC---CEEEECTTSSEEEEEEGG---------GTEEEEEESSSTTTTCEEEEEECSSE
T ss_pred CceEEEEeCCCCEEEEeccCCccC---cceEECCCCCEEEEEeCC---------CCeEEEEECCCCcCCccceEEeCCCC
Confidence 357999999888765542 11111 123333 33 58887431 367899998753 33332222211
Q ss_pred ccCCCCccccccccccceeeEEE-eCCEEEEeccCCCCC--c-eeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEE
Q 011881 268 RAQGLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWP--F-FVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLS 343 (475)
Q Consensus 268 r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~--~-~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~ 343 (475)
.+++. -+|+|||........ . .....+.+||+....-..+..+-. .+ ......+
T Consensus 232 ------------------~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g--~~--~~~~~~~ 289 (322)
T 2fp8_A 232 ------------------GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPP--FA--GEHFEQI 289 (322)
T ss_dssp ------------------EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTT--TT--TSCCCEE
T ss_pred ------------------CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCC--Cc--cccceEE
Confidence 23332 357888864210000 0 000224789987554444543111 11 1112224
Q ss_pred EEECCeEEEEcCCCCCCCCeEEEEeCCCC
Q 011881 344 VVLDGELYAFDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 344 ~~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 372 (475)
+..+++|||.+. ..+.|.+|+++.+
T Consensus 290 ~~~~g~L~v~~~----~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 290 QEHDGLLYIGTL----FHGSVGILVYDKK 314 (322)
T ss_dssp EEETTEEEEECS----SCSEEEEEEC---
T ss_pred EEeCCEEEEeec----CCCceEEEecccc
Confidence 567899999864 2368999987643
No 126
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=91.54 E-value=3.7 Score=39.41 Aligned_cols=134 Identities=10% Similarity=0.035 Sum_probs=71.4
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCC
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLP 273 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 273 (475)
..+.+||..+.+............-.+++.. ++++++.|+. ...+.+||..+.+-...-. .....
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~--~~~~~--- 178 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLG---------NGLVDIYDVESQTKLRTMA--GHQAR--- 178 (401)
T ss_dssp TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEET---------TSCEEEEETTTCCEEEEEC--CCSSC---
T ss_pred CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECC---------CCeEEEEECcCCeEEEEec--CCCCc---
Confidence 3788999988887665443322222222222 5666677663 2478899998876432211 11111
Q ss_pred ccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceE--EcCCCCCCCCCCccCCCeEEEE-ECCeE
Q 011881 274 NAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWV--EMPIGMGEGWPARQAGTKLSVV-LDGEL 350 (475)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~--~~~~~~~~~~p~~~~~~~~~~~-~~~~l 350 (475)
...+..++.+++.|+.++ ...+||..+..-. .+.. .......++. .++.+
T Consensus 179 ------------v~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~ 231 (401)
T 4aez_A 179 ------------VGCLSWNRHVLSSGSRSG-------AIHHHDVRIANHQIGTLQG--------HSSEVCGLAWRSDGLQ 231 (401)
T ss_dssp ------------EEEEEEETTEEEEEETTS-------EEEEEETTSSSCEEEEEEC--------CSSCEEEEEECTTSSE
T ss_pred ------------eEEEEECCCEEEEEcCCC-------CEEEEecccCcceeeEEcC--------CCCCeeEEEEcCCCCE
Confidence 223334666777676553 2377888743321 1211 0011111222 26777
Q ss_pred EEEcCCCCCCCCeEEEEeCCCCc
Q 011881 351 YAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 351 yv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
++.|+.+ +.|.+||..+.+
T Consensus 232 l~s~~~d----~~v~iwd~~~~~ 250 (401)
T 4aez_A 232 LASGGND----NVVQIWDARSSI 250 (401)
T ss_dssp EEEEETT----SCEEEEETTCSS
T ss_pred EEEEeCC----CeEEEccCCCCC
Confidence 7777743 579999998754
No 127
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=91.49 E-value=6.9 Score=40.74 Aligned_cols=162 Identities=12% Similarity=-0.026 Sum_probs=81.4
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCC-cEEeCCCCCCccc---eeeeEE-E--CCEEEEEeceecCCCCcccCCeEEEE
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIAN-TWNEATSMSVGRA---YCKTGI-L--NDKLYVVGGVSRARGGLTPLQSAEVF 251 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~-~W~~~~~~p~~R~---~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~~~~y 251 (475)
+++..+++..+.......++.+|+.+. ..+.+........ ...++. - ++++++.+.. + ....++.+
T Consensus 268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~----~---g~~~l~~~ 340 (706)
T 2z3z_A 268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR----D---GWNHLYLY 340 (706)
T ss_dssp TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT----T---SSCEEEEE
T ss_pred CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc----C---CccEEEEE
Confidence 454344444444444568999999988 6665532111110 011222 2 6776555532 1 14678888
Q ss_pred eCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCC-EEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCC
Q 011881 252 DPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMG-RLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMG 330 (475)
Q Consensus 252 d~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 330 (475)
|......+.+..-...... .....-++ .||+.+..++... ...+.+|..+++...+.. .
T Consensus 341 ~~~~~~~~~l~~~~~~v~~---------------~~~~spdg~~l~~~~~~~~~~~---~~l~~~d~~~~~~~~l~~-~- 400 (706)
T 2z3z_A 341 DTTGRLIRQVTKGEWEVTN---------------FAGFDPKGTRLYFESTEASPLE---RHFYCIDIKGGKTKDLTP-E- 400 (706)
T ss_dssp ETTSCEEEECCCSSSCEEE---------------EEEECTTSSEEEEEESSSCTTC---BEEEEEETTCCCCEESCC-S-
T ss_pred ECCCCEEEecCCCCeEEEe---------------eeEEcCCCCEEEEEecCCCCce---EEEEEEEcCCCCceeccC-C-
Confidence 8777767766432111110 01122234 4665544322100 223778888877666643 1
Q ss_pred CCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 331 EGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 331 ~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
.. -......-+++.+++...+......++.+|.++++
T Consensus 401 ----~~--~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 401 ----SG--MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ----SS--EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ----Cc--eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 01 11112334676666654333333579999998876
No 128
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=91.37 E-value=5.5 Score=38.46 Aligned_cols=147 Identities=12% Similarity=0.062 Sum_probs=74.1
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.+++.|+.++ .+.+||..+.+-...-.... .....+.+ ++++++.|+.+ ..+.+||..+.
T Consensus 119 ~~~~l~s~s~Dg-----~i~vwd~~~~~~~~~l~~h~--~~V~~v~~~~~~~~l~sgs~D---------~~i~iwd~~~~ 182 (410)
T 1vyh_C 119 VFSVMVSASEDA-----TIKVWDYETGDFERTLKGHT--DSVQDISFDHSGKLLASCSAD---------MTIKLWDFQGF 182 (410)
T ss_dssp SSSEEEEEESSS-----CEEEEETTTCCCCEEECCCS--SCEEEEEECTTSSEEEEEETT---------SCCCEEETTSS
T ss_pred CCCEEEEEeCCC-----eEEEEECCCCcEEEEEeccC--CcEEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCC
Confidence 456677776543 67888887765432211111 11122222 56777777742 46778888765
Q ss_pred CeEecCCCCccccCCCCccccccccccceeeEEE-eCCEEEEeccCCCCCceeccceEEEeCCCCceEE-cCCCCCCCCC
Q 011881 257 AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE-MPIGMGEGWP 334 (475)
Q Consensus 257 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~p 334 (475)
+-.. .+...... + .++.. -++..++.|+.++ ....||..++.-.. +.. .
T Consensus 183 ~~~~--~~~~h~~~-------------V-~~v~~~p~~~~l~s~s~D~-------~i~~wd~~~~~~~~~~~~-h----- 233 (410)
T 1vyh_C 183 ECIR--TMHGHDHN-------------V-SSVSIMPNGDHIVSASRDK-------TIKMWEVQTGYCVKTFTG-H----- 233 (410)
T ss_dssp CEEE--CCCCCSSC-------------E-EEEEECSSSSEEEEEETTS-------EEEEEETTTCCEEEEEEC-C-----
T ss_pred ceeE--EEcCCCCC-------------E-EEEEEeCCCCEEEEEeCCC-------eEEEEECCCCcEEEEEeC-C-----
Confidence 4322 12111111 0 22222 2566666666553 23788988776432 211 0
Q ss_pred CccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEE
Q 011881 335 ARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWK 375 (475)
Q Consensus 335 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~ 375 (475)
...-.......++.+++.|+.+ +.+.+||..+.+-.
T Consensus 234 -~~~v~~~~~~~~g~~l~s~s~D----~~v~vwd~~~~~~~ 269 (410)
T 1vyh_C 234 -REWVRMVRPNQDGTLIASCSND----QTVRVWVVATKECK 269 (410)
T ss_dssp -SSCEEEEEECTTSSEEEEEETT----SCEEEEETTTCCEE
T ss_pred -CccEEEEEECCCCCEEEEEcCC----CeEEEEECCCCcee
Confidence 0000111122356777777643 56888898776543
No 129
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=91.30 E-value=6.8 Score=35.58 Aligned_cols=128 Identities=13% Similarity=0.080 Sum_probs=66.9
Q ss_pred cceEEEEeCCCCcEEeCC-CCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCC-CCCe-Ee--cCCCCcc
Q 011881 194 MRCVRRYDPIANTWNEAT-SMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPT-TDAW-SE--VPSMPFS 267 (475)
Q Consensus 194 ~~~~~~yd~~t~~W~~~~-~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~-t~~W-~~--~~~~p~~ 267 (475)
...+++||+. .+.+.+. .+..+ ..++.. ++++++.... ...+++||+. +++. .. +-.....
T Consensus 152 ~~~l~~~~~~-g~~~~~~~~~~~~---~gi~~s~dg~~lv~~~~---------~~~i~~~~~~~~g~~~~~~~~~~~~~~ 218 (296)
T 3e5z_A 152 GRWVFRLAPD-GTLSAPIRDRVKP---NGLAFLPSGNLLVSDTG---------DNATHRYCLNARGETEYQGVHFTVEPG 218 (296)
T ss_dssp SCEEEEECTT-SCEEEEECCCSSE---EEEEECTTSCEEEEETT---------TTEEEEEEECSSSCEEEEEEEECCSSS
T ss_pred CcEEEEECCC-CCEEEeecCCCCC---ccEEECCCCCEEEEeCC---------CCeEEEEEECCCCcCcCCCeEeeCCCC
Confidence 3589999987 5554442 22211 123332 5666644431 3578899886 4454 11 1111110
Q ss_pred ccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEE
Q 011881 268 RAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVL 346 (475)
Q Consensus 268 r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~ 346 (475)
.. .+++ .-+|+||+..+ .+..+||++...-..+.. |.. ...++.-
T Consensus 219 ~p----------------~~i~~d~~G~l~v~~~---------~~v~~~~~~g~~~~~~~~------~~~---~~~~~f~ 264 (296)
T 3e5z_A 219 KT----------------DGLRVDAGGLIWASAG---------DGVHVLTPDGDELGRVLT------PQT---TSNLCFG 264 (296)
T ss_dssp CC----------------CSEEEBTTSCEEEEET---------TEEEEECTTSCEEEEEEC------SSC---CCEEEEE
T ss_pred CC----------------CeEEECCCCCEEEEcC---------CeEEEECCCCCEEEEEEC------CCC---ceeEEEE
Confidence 00 2223 34788988651 345899998655555543 111 1112321
Q ss_pred --C-CeEEEEcCCCCCCCCeEEEEeCCCCcE
Q 011881 347 --D-GELYAFDPSSSLNSAKIKVYDQKEDTW 374 (475)
Q Consensus 347 --~-~~lyv~GG~~~~~~~~v~~yd~~~~~W 374 (475)
+ +.||+... +.++.|++++++-
T Consensus 265 ~~d~~~L~v~t~------~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 265 GPEGRTLYMTVS------TEFWSIETNVRGL 289 (296)
T ss_dssp STTSCEEEEEET------TEEEEEECSCCBC
T ss_pred CCCCCEEEEEcC------CeEEEEEcccccc
Confidence 2 35777653 4799999988754
No 130
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=91.14 E-value=15 Score=37.62 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=48.1
Q ss_pred eEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCCc---c---ceeeeEEECCEEEEEeceecCCCCcccC
Q 011881 174 AIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSVG---R---AYCKTGILNDKLYVVGGVSRARGGLTPL 245 (475)
Q Consensus 174 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~---R---~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 245 (475)
+.++.++.||+.... ..++.+|..|.+ |+.-...+.. . ...+.++.+++||+... .
T Consensus 63 ~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~----------d 126 (582)
T 1flg_A 63 QAIVSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL----------D 126 (582)
T ss_dssp CCEEETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET----------T
T ss_pred ccEEECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC----------C
Confidence 345689999998652 248999998765 8875433221 1 11344567999998542 2
Q ss_pred CeEEEEeCCCCC--eEec
Q 011881 246 QSAEVFDPTTDA--WSEV 261 (475)
Q Consensus 246 ~~~~~yd~~t~~--W~~~ 261 (475)
..+..+|.+|.+ |+.-
T Consensus 127 g~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 127 ASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp TEEEEEESSSCCEEEEEE
T ss_pred CEEEEEECCCCCEEeeec
Confidence 578999998876 8854
No 131
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=91.13 E-value=18 Score=38.57 Aligned_cols=172 Identities=13% Similarity=0.162 Sum_probs=92.5
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCC----cEEe-CC-CCCCccceeeeEE--ECCEEEEEeceecCCCCcccCCeEEE
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIAN----TWNE-AT-SMSVGRAYCKTGI--LNDKLYVVGGVSRARGGLTPLQSAEV 250 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~----~W~~-~~-~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ 250 (475)
++.||+.-.. ...++++++... ..+. +. .+..|. ++++ .+++||+.-.. ...+++
T Consensus 435 ~~~lY~sD~~-----~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~---GLAvD~~~~~LY~tD~~---------~~~I~v 497 (791)
T 3m0c_C 435 SNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQAPD---GLAVDWIHSNIYWTDSV---------LGTVSV 497 (791)
T ss_dssp TTEEEEEETT-----TTEEEEEEC--------CEEEECSSCSCCC---EEEEETTTTEEEEEETT---------TTEEEE
T ss_pred CCeeEEeecc-----ceeEEEEeccCCCCCcceeEEEecCCCCcc---eeeeeecCCcEEEEecC---------CCeEEE
Confidence 6889988532 346778877642 2222 22 222222 2343 36799998532 468999
Q ss_pred EeCCCCCeEecC--CCCccccCCCCccccccccccceeeEEE--eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcC
Q 011881 251 FDPTTDAWSEVP--SMPFSRAQGLPNAFFADMLKPIATGMTS--YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMP 326 (475)
Q Consensus 251 yd~~t~~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~ 326 (475)
+|+....-+.+. .+..| .++++ .++.||+.--... ..++++++....=..+.
T Consensus 498 ~~ldG~~~~~l~~~~l~~P------------------~gIaVDp~~g~LYwtD~g~~------~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 498 ADTKGVKRKTLFRENGSKP------------------RAIVVDPVHGFMYWTDWGTP------AKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp EETTSSSEEEEEECTTCCE------------------EEEEEETTTTEEEEEECSSS------CEEEEEETTSCCEEEEE
T ss_pred EeCCCCeEEEEEeCCCCCc------------------ceEEEecCCCCEEEecCCCC------CeEEEEecCCCceEEEE
Confidence 999876554442 23323 33444 4689998531110 12377787655443332
Q ss_pred CCCCCCCCCccCCCeEEEE--ECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEE
Q 011881 327 IGMGEGWPARQAGTKLSVV--LDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHV 404 (475)
Q Consensus 327 ~~~~~~~p~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v 404 (475)
. ....+|. + +++ .+++||+... ..+.|+++|+....=+.+... . ..+ ...+++++.+++||+
T Consensus 554 ~-~~l~~P~---G---LavD~~~~~LYwaD~----~~~~I~~~d~dG~~~~~v~~~-~-~~l---~~P~glav~~~~lYw 617 (791)
T 3m0c_C 554 T-ENIQWPN---G---ITLDLLSGRLYWVDS----KLHSISSIDVNGGNRKTILED-E-KRL---AHPFSLAVFEDKVFW 617 (791)
T ss_dssp C-SSCSCEE---E---EEEETTTTEEEEEET----TTTEEEEEETTSCSCEEEEEC-T-TTT---SSEEEEEEETTEEEE
T ss_pred e-CCCCCce---E---EEEecCCCeEEEEeC----CCCcEEEEecCCCceEEEecC-C-Ccc---CCCCEEEEeCCEEEE
Confidence 2 1111121 1 343 3789999964 236899999876543333210 0 011 234678888999998
Q ss_pred Eee
Q 011881 405 LTK 407 (475)
Q Consensus 405 ~GG 407 (475)
.--
T Consensus 618 tD~ 620 (791)
T 3m0c_C 618 TDI 620 (791)
T ss_dssp EET
T ss_pred EEC
Confidence 763
No 132
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=91.07 E-value=5 Score=35.40 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=34.7
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcE--EeC----CCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEE
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTW--NEA----TSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVF 251 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W--~~~----~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~y 251 (475)
.++++|+|=| +.+|+++.....+ ..+ +.+|.. .. ++...++++|+|-| +..++|
T Consensus 27 ~~g~~yfFkg-------~~~Wr~~~~~~~~~p~~Is~~wpgLP~~-ID-AA~~~~~~~yfFkG-----------~~yw~~ 86 (219)
T 1hxn_A 27 NHGATYVFSG-------SHYWRLDTNRDGWHSWPIAHQWPQGPST-VD-AAFSWEDKLYLIQD-----------TKVYVF 86 (219)
T ss_dssp TTSCEEEEET-------TEEEESSSSSCTTCCEEGGGTCTTSCSS-CS-EEEEETTEEEEEET-----------TEEEEE
T ss_pred CCCcEEEEeC-------CEEEEEcCCCCCCCceEhhhhccCCCCC-cc-EEEEECCcEEEecC-----------CEEEEE
Confidence 5789999966 3667776543221 111 123321 22 33345899999977 468889
Q ss_pred eCCC
Q 011881 252 DPTT 255 (475)
Q Consensus 252 d~~t 255 (475)
+..+
T Consensus 87 ~~~~ 90 (219)
T 1hxn_A 87 LTKG 90 (219)
T ss_dssp ECSS
T ss_pred eCCC
Confidence 8754
No 133
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=91.07 E-value=9.7 Score=35.37 Aligned_cols=155 Identities=10% Similarity=0.075 Sum_probs=75.8
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCC--CeEecCCCCccccCC
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD--AWSEVPSMPFSRAQG 271 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~r~~~ 271 (475)
..+.++|+.+.+.........-..-..+++. +++|||.... ...+.+||+... .-..+.....+...
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~---------~~~v~~~~~~g~~~~~~~~~~~~~~g~~- 138 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVA---------LHQVFKLDPHSKEGPLLILGRSMQPGSD- 138 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETT---------TTEEEEECTTCSSCCSEEESBTTBCCCS-
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECC---------CCEEEEEeCCCCeEEEEEecccCCCCCC-
Confidence 3699999988775432111100111233333 6789988642 367999998765 22222211000000
Q ss_pred CCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCC--CCCCccCCCeEEEEE-
Q 011881 272 LPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGE--GWPARQAGTKLSVVL- 346 (475)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--~~p~~~~~~~~~~~~- 346 (475)
. ..+ ....++++. ++.|||..++.. ....+||+....-..+...... ..+........+++.
T Consensus 139 -~-----~~~-~~P~~ia~~~~~g~lyv~d~~~~------~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~ 205 (329)
T 3fvz_A 139 -Q-----NHF-CQPTDVAVEPSTGAVFVSDGYCN------SRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVP 205 (329)
T ss_dssp -T-----TCC-SSEEEEEECTTTCCEEEEECSSC------CEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEET
T ss_pred -c-----ccc-CCCcEEEEeCCCCeEEEEeCCCC------CeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEEC
Confidence 0 000 001344544 689999865211 2347888654433333221000 000111111113333
Q ss_pred C-CeEEEEcCCCCCCCCeEEEEeCCCCcEEE
Q 011881 347 D-GELYAFDPSSSLNSAKIKVYDQKEDTWKV 376 (475)
Q Consensus 347 ~-~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 376 (475)
+ +.|||.... .+.|.+||+++.+...
T Consensus 206 ~~g~l~v~d~~----~~~I~~~~~~~G~~~~ 232 (329)
T 3fvz_A 206 HLDQLCVADRE----NGRIQCFKTDTKEFVR 232 (329)
T ss_dssp TTTEEEEEETT----TTEEEEEETTTCCEEE
T ss_pred CCCEEEEEECC----CCEEEEEECCCCcEEE
Confidence 4 899998752 3689999999766654
No 134
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=90.80 E-value=9.1 Score=36.13 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=17.2
Q ss_pred CCeEEEEcCCCCCCCCeEEEEeCCCCcE
Q 011881 347 DGELYAFDPSSSLNSAKIKVYDQKEDTW 374 (475)
Q Consensus 347 ~~~lyv~GG~~~~~~~~v~~yd~~~~~W 374 (475)
++++++.|+. .+.|.+||..+.+-
T Consensus 302 ~~~~l~~~~~----dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 302 SGETLCSAGW----DGKLRFWDVKTKER 325 (397)
T ss_dssp SSSEEEEEET----TSEEEEEETTTTEE
T ss_pred CCCEEEEEeC----CCeEEEEEcCCCce
Confidence 5677777763 35899999987653
No 135
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=90.58 E-value=18 Score=37.70 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=48.1
Q ss_pred eEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCC--CCC-ccceeeeEEECCEEEEEeceecCCCCcccCCeE
Q 011881 174 AIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATS--MSV-GRAYCKTGILNDKLYVVGGVSRARGGLTPLQSA 248 (475)
Q Consensus 174 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~--~p~-~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 248 (475)
+.++.+++||+... ...++.+|..|.+ |+.-.. .+. .....+.++.+++||+..+..+ ......+
T Consensus 123 ~~a~~~~~v~v~~~------dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~----~~~~g~v 192 (677)
T 1kb0_A 123 GVALWKGKVYVGAW------DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE----YGVRGYI 192 (677)
T ss_dssp CCEEETTEEEEECT------TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT----TCCBCEE
T ss_pred CceEECCEEEEEcC------CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccc----cCCCCEE
Confidence 45567889988642 2479999998875 876422 111 1122244567899988654211 1124679
Q ss_pred EEEeCCCCC--eEec
Q 011881 249 EVFDPTTDA--WSEV 261 (475)
Q Consensus 249 ~~yd~~t~~--W~~~ 261 (475)
..||..|++ |+.-
T Consensus 193 ~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 193 TAYDAETGERKWRWF 207 (677)
T ss_dssp EEEETTTCCEEEEEE
T ss_pred EEEECCCCcEEEEec
Confidence 999999876 8753
No 136
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=90.44 E-value=0.081 Score=54.59 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHhccC-ChhhhHHHHHhhhhhhhh
Q 011881 44 PSLPDELSIQILARV-PRIFYLNLRAVSRKWKAT 76 (475)
Q Consensus 44 ~~LP~dl~~~iL~~l-p~~~l~~l~~vck~W~~l 76 (475)
..||||++..||.+| |.....+++.|||+|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 469999999999999 899999999999999987
No 137
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=90.38 E-value=5.4 Score=37.66 Aligned_cols=149 Identities=11% Similarity=0.051 Sum_probs=72.5
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE---CCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL---NDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
++..++.|+.++ .+.+||+.+++-... +........++.+ +..+++.|+.+ ..+.+||..+
T Consensus 138 dg~~l~sgs~d~-----~i~iwd~~~~~~~~~--~~~h~~~V~~~~~~~~~~~~l~s~s~D---------~~v~iwd~~~ 201 (344)
T 4gqb_B 138 SGTQAVSGSKDI-----CIKVWDLAQQVVLSS--YRAHAAQVTCVAASPHKDSVFLSCSED---------NRILLWDTRC 201 (344)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTTEEEEE--ECCCSSCEEEEEECSSCTTEEEEEETT---------SCEEEEETTS
T ss_pred CCCEEEEEeCCC-----eEEEEECCCCcEEEE--EcCcCCceEEEEecCCCCCceeeeccc---------cccccccccc
Confidence 566677776543 578889887754322 1111111122222 33577777642 5788999988
Q ss_pred CCeEecCCCCccccCCCCccccccccccceeeEEE--eCCEEEEeccCCCCCceeccceEEEeCCCCceE-EcCCCCCCC
Q 011881 256 DAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS--YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWV-EMPIGMGEG 332 (475)
Q Consensus 256 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~ 332 (475)
.+-...-........ ..+++. .++++++.|+.++ ...+||..+++-. .+..
T Consensus 202 ~~~~~~~~~~~~~~~--------------~~~~~~~p~~~~~l~sg~~dg-------~v~~wd~~~~~~~~~~~~----- 255 (344)
T 4gqb_B 202 PKPASQIGCSAPGYL--------------PTSLAWHPQQSEVFVFGDENG-------TVSLVDTKSTSCVLSSAV----- 255 (344)
T ss_dssp SSCEEECC----CCC--------------EEEEEECSSCTTEEEEEETTS-------EEEEEESCC--CCEEEEC-----
T ss_pred cceeeeeecceeecc--------------ceeeeecCCCCcceEEeccCC-------cEEEEECCCCcEEEEEcC-----
Confidence 764322111111110 022222 2556777776543 2367888765421 1111
Q ss_pred CCCccCCCeEEEEE-CC-eEEEEcCCCCCCCCeEEEEeCCCCcEEE
Q 011881 333 WPARQAGTKLSVVL-DG-ELYAFDPSSSLNSAKIKVYDQKEDTWKV 376 (475)
Q Consensus 333 ~p~~~~~~~~~~~~-~~-~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 376 (475)
.......++.. ++ ++++.|+.+ ..|.+||..+.+-..
T Consensus 256 ---h~~~v~~v~fsp~g~~~lasgs~D----~~i~vwd~~~~~~~~ 294 (344)
T 4gqb_B 256 ---HSQCVTGLVFSPHSVPFLASLSED----CSLAVLDSSLSELFR 294 (344)
T ss_dssp ---CSSCEEEEEECSSSSCCEEEEETT----SCEEEECTTCCEEEE
T ss_pred ---CCCCEEEEEEccCCCeEEEEEeCC----CeEEEEECCCCcEEE
Confidence 01111112222 34 456666643 579999998876443
No 138
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=90.27 E-value=14 Score=35.90 Aligned_cols=107 Identities=6% Similarity=-0.094 Sum_probs=53.7
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEe--CCCCCCcccee-eeEE-EC---CEEEEEeceecCCCCcccCCeEEEE
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNE--ATSMSVGRAYC-KTGI-LN---DKLYVVGGVSRARGGLTPLQSAEVF 251 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~--~~~~p~~R~~~-~~~~-~~---~~iyv~GG~~~~~~~~~~~~~~~~y 251 (475)
++..++.|+.+ ..++.+|..+.+... +..+....... +++. -+ +++++.|+. -..+.+|
T Consensus 160 ~~~~l~~~~~~-----g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~---------d~~i~vw 225 (450)
T 2vdu_B 160 DDTTVIIADKF-----GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR---------DEHIKIS 225 (450)
T ss_dssp TSSEEEEEETT-----SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET---------TSCEEEE
T ss_pred CCCEEEEEeCC-----CcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC---------CCcEEEE
Confidence 45555566432 357888876654332 11111111111 2222 25 777777764 2578889
Q ss_pred eCCCCCeEec-C-CCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceE
Q 011881 252 DPTTDAWSEV-P-SMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWV 323 (475)
Q Consensus 252 d~~t~~W~~~-~-~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 323 (475)
|..+.+.... . .-. .. + .+++..++++++.|+.++ ...+||..+++-.
T Consensus 226 d~~~~~~~~~~~~~h~---~~-------------v-~~~~~sd~~~l~s~~~d~-------~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 226 HYPQCFIVDKWLFGHK---HF-------------V-SSICCGKDYLLLSAGGDD-------KIFAWDWKTGKNL 275 (450)
T ss_dssp EESCTTCEEEECCCCS---SC-------------E-EEEEECSTTEEEEEESSS-------EEEEEETTTCCEE
T ss_pred ECCCCceeeeeecCCC---Cc-------------e-EEEEECCCCEEEEEeCCC-------eEEEEECCCCcEe
Confidence 9877653321 1 111 00 0 122222777777776543 2378888877643
No 139
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=90.05 E-value=7.2 Score=37.88 Aligned_cols=148 Identities=7% Similarity=-0.031 Sum_probs=74.1
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE---CCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL---NDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
++.+++.|+.++ .+.+||..+.+-..+-.+........++.+ ++.+++.|+.+ ..+.+||.++
T Consensus 131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D---------~~v~iwd~~~ 196 (435)
T 4e54_B 131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME---------GTTRLQDFKG 196 (435)
T ss_dssp CTTCEEEEETTS-----CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS---------SCEEEEETTS
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC---------CEEEEeeccC
Confidence 456777787654 578888877654333222111111122222 45666667642 4688899988
Q ss_pred CCeEecCCCCccccCCCCccccccccccceeeE-EEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCC
Q 011881 256 DAWSEVPSMPFSRAQGLPNAFFADMLKPIATGM-TSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWP 334 (475)
Q Consensus 256 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p 334 (475)
+.-..+.......... .++ ..-++++++.|+.++. ...||.....-..+..
T Consensus 197 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~g~~dg~-------i~~wd~~~~~~~~~~~------- 248 (435)
T 4e54_B 197 NILRVFASSDTINIWF--------------CSLDVSASSRMVVTGDNVGN-------VILLNMDGKELWNLRM------- 248 (435)
T ss_dssp CEEEEEECCSSCSCCC--------------CCEEEETTTTEEEEECSSSB-------EEEEESSSCBCCCSBC-------
T ss_pred CceeEEeccCCCCccE--------------EEEEECCCCCEEEEEeCCCc-------EeeeccCcceeEEEec-------
Confidence 7655443221111110 122 2346777777775542 3678876543222111
Q ss_pred CccCCCeEEEEE-C-CeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 335 ARQAGTKLSVVL-D-GELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 335 ~~~~~~~~~~~~-~-~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
.......++.. + +.+++.|+.+ ..|.+||..+.+
T Consensus 249 -h~~~v~~v~~~p~~~~~~~s~s~d----~~v~iwd~~~~~ 284 (435)
T 4e54_B 249 -HKKKVTHVALNPCCDWFLATASVD----QTVKIWDLRQVR 284 (435)
T ss_dssp -CSSCEEEEEECTTCSSEEEEEETT----SBCCEEETTTCC
T ss_pred -ccceEEeeeecCCCceEEEEecCc----ceeeEEeccccc
Confidence 11111112221 3 3466667643 467888887643
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=89.93 E-value=20 Score=37.14 Aligned_cols=159 Identities=12% Similarity=0.008 Sum_probs=78.7
Q ss_pred cceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC-CeEecCCCCccccC
Q 011881 194 MRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD-AWSEVPSMPFSRAQ 270 (475)
Q Consensus 194 ~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~-~W~~~~~~p~~r~~ 270 (475)
...++++|+.+.+-..+............+.+ +++..+++..+. ......+..+|+.+. ..+.+.........
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~----~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNR----AQNECKVNAYDAETGRFVRTLFVETDKHYV 309 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECT----TSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCC----CCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence 46799999998887665432111122222333 565444444321 112458899999988 66654311100000
Q ss_pred CCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECC
Q 011881 271 GLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDG 348 (475)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~ 348 (475)
. .+......- +|++++.+..++. ...+.+|........+.... ..... .....-++
T Consensus 310 ~-----------~~~~~~~sp~~dg~~l~~~~~~g~-----~~l~~~~~~~~~~~~l~~~~-----~~v~~-~~~~spdg 367 (706)
T 2z3z_A 310 E-----------PLHPLTFLPGSNNQFIWQSRRDGW-----NHLYLYDTTGRLIRQVTKGE-----WEVTN-FAGFDPKG 367 (706)
T ss_dssp C-----------CCSCCEECTTCSSEEEEEECTTSS-----CEEEEEETTSCEEEECCCSS-----SCEEE-EEEECTTS
T ss_pred C-----------ccCCceeecCCCCEEEEEEccCCc-----cEEEEEECCCCEEEecCCCC-----eEEEe-eeEEcCCC
Confidence 0 000112233 6776555544432 22367777666677664311 01100 00112244
Q ss_pred -eEEEEcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 349 -ELYAFDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 349 -~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
.||+.+..+......++.+|.++.+.+.+.
T Consensus 368 ~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 398 (706)
T 2z3z_A 368 TRLYFESTEASPLERHFYCIDIKGGKTKDLT 398 (706)
T ss_dssp SEEEEEESSSCTTCBEEEEEETTCCCCEESC
T ss_pred CEEEEEecCCCCceEEEEEEEcCCCCceecc
Confidence 566665443322358999999887766653
No 141
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=89.91 E-value=7.7 Score=36.62 Aligned_cols=65 Identities=11% Similarity=0.128 Sum_probs=35.6
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.+++.|+.+ ..+.+||..+.+-...-..+.+......... ++.+++.|+. ...+.+||..+.
T Consensus 111 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~d~~~~ 176 (408)
T 4a11_B 111 DTGMFTSSSFD-----KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTR---------GPKVQLCDLKSG 176 (408)
T ss_dssp CTTCEEEEETT-----SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEES---------SSSEEEEESSSS
T ss_pred CCcEEEEEeCC-----CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcC---------CCeEEEEeCCCc
Confidence 44466666543 3688888888765444333222221111111 3446666664 257889998776
Q ss_pred C
Q 011881 257 A 257 (475)
Q Consensus 257 ~ 257 (475)
.
T Consensus 177 ~ 177 (408)
T 4a11_B 177 S 177 (408)
T ss_dssp C
T ss_pred c
Confidence 4
No 142
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=89.86 E-value=9.7 Score=38.91 Aligned_cols=64 Identities=14% Similarity=0.037 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-----CC-EEEEEeceecCCCCcccCCeEEEEe
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-----ND-KLYVVGGVSRARGGLTPLQSAEVFD 252 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~~~~~yd 252 (475)
+..+|+.+. ...+.+||+.+.+-+.+..++....-..+++. ++ .+||..-. .+.+.++|
T Consensus 208 Gr~lyv~~~------dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~---------~~~v~ViD 272 (567)
T 1qks_A 208 GRYLFVIGR------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW---------PPQYVIMD 272 (567)
T ss_dssp SCEEEEEET------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE---------TTEEEEEE
T ss_pred CCEEEEEcC------CCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEcc---------CCeEEEEE
Confidence 456787642 24799999962222333333332222234444 44 56666432 36788999
Q ss_pred CCCCC
Q 011881 253 PTTDA 257 (475)
Q Consensus 253 ~~t~~ 257 (475)
..|.+
T Consensus 273 ~~t~~ 277 (567)
T 1qks_A 273 GETLE 277 (567)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 77754
No 143
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=89.86 E-value=7.3 Score=36.69 Aligned_cols=136 Identities=15% Similarity=0.076 Sum_probs=68.5
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEEE----CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccC
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGIL----NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQ 270 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~ 270 (475)
..+.+||+.+.+-...-.-.. ....+..+ ++.+++.|+. -..+.+||..+.+....-.... ..
T Consensus 176 ~~v~lwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~g~~l~sgs~---------Dg~v~~wd~~~~~~~~~~~~h~--~~ 242 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFHGHG--ADVLCLDLAPSETGNTFVSGGC---------DKKAMVWDMRSGQCVQAFETHE--SD 242 (354)
T ss_dssp SEEEEEETTTCCEEEEEECCS--SCEEEEEECCCSSCCEEEEEET---------TSCEEEEETTTCCEEEEECCCS--SC
T ss_pred CcEEEEeCCCCeEEEEEcCCC--CCeEEEEEEeCCCCCEEEEEeC---------CCeEEEEECCCCcEEEEecCCC--CC
Confidence 368888988776432211111 11112222 3567777774 2578999998876543211110 11
Q ss_pred CCCccccccccccceeeEEE-eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEE-EEECC
Q 011881 271 GLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLS-VVLDG 348 (475)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~-~~~~~ 348 (475)
+ .+++. -++.+++.|+.++. ...||..+++-..+-... ....+...+ ...++
T Consensus 243 -------------v-~~v~~~p~~~~l~s~s~D~~-------v~lwd~~~~~~~~~~~~~-----~~~~~~~~~~~s~~g 296 (354)
T 2pbi_B 243 -------------V-NSVRYYPSGDAFASGSDDAT-------CRLYDLRADREVAIYSKE-----SIIFGASSVDFSLSG 296 (354)
T ss_dssp -------------E-EEEEECTTSSEEEEEETTSC-------EEEEETTTTEEEEEECCT-----TCCSCEEEEEECTTS
T ss_pred -------------e-EEEEEeCCCCEEEEEeCCCe-------EEEEECCCCcEEEEEcCC-----CcccceeEEEEeCCC
Confidence 0 22222 25667777765542 377888776533221101 011111112 22367
Q ss_pred eEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 349 ELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 349 ~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
++++.|+.+ ..+.+||..+.+
T Consensus 297 ~~l~~g~~d----~~i~vwd~~~~~ 317 (354)
T 2pbi_B 297 RLLFAGYND----YTINVWDVLKGS 317 (354)
T ss_dssp SEEEEEETT----SCEEEEETTTCS
T ss_pred CEEEEEECC----CcEEEEECCCCc
Confidence 777777643 579999987654
No 144
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=89.85 E-value=19 Score=36.72 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=47.3
Q ss_pred eEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeC-CCCCCc-cceeeeEEECCEEEEEeceecCCCCcccCCeEE
Q 011881 174 AIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEA-TSMSVG-RAYCKTGILNDKLYVVGGVSRARGGLTPLQSAE 249 (475)
Q Consensus 174 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~-~~~p~~-R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 249 (475)
+.++.+++||+... ...++.+|..|.+ |+.- ...+.. ....+.++.+++||+-.+..+ ......+.
T Consensus 110 ~~~~~~~~v~v~~~------dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~----~~~~g~v~ 179 (571)
T 2ad6_A 110 GLAYGAGQIVKKQA------NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAE----LGVRGAVN 179 (571)
T ss_dssp CCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGG----GTCCCEEE
T ss_pred ccEEECCEEEEEeC------CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCc----cCCCCEEE
Confidence 34567899988743 2479999998875 8753 221111 112233457899988653211 01135799
Q ss_pred EEeCCCCC--eEec
Q 011881 250 VFDPTTDA--WSEV 261 (475)
Q Consensus 250 ~yd~~t~~--W~~~ 261 (475)
.||.+|.+ |+.-
T Consensus 180 a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 180 AFDLKTGELKWRAF 193 (571)
T ss_dssp EEETTTCCEEEEEE
T ss_pred EEECCCCcEEEEEc
Confidence 99999875 8754
No 145
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=89.38 E-value=23 Score=37.04 Aligned_cols=121 Identities=18% Similarity=0.175 Sum_probs=71.9
Q ss_pred eEEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCCc--------cceeeeEEECCEEEEEeceecCCCCcc
Q 011881 174 AIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSVG--------RAYCKTGILNDKLYVVGGVSRARGGLT 243 (475)
Q Consensus 174 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~--------R~~~~~~~~~~~iyv~GG~~~~~~~~~ 243 (475)
+.++.++.||+... ...++.+|..|.+ |+.-...+.. ....+.++.+++||+...
T Consensus 65 ~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~--------- 129 (689)
T 1yiq_A 65 TPIVVDGVMYTTGP------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL--------- 129 (689)
T ss_dssp CCEEETTEEEEECG------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---------
T ss_pred cCEEECCEEEEEcC------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc---------
Confidence 34568999999764 2468999998775 8865433211 112234667899988653
Q ss_pred cCCeEEEEeCCCCC--eEecCC-CCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCC
Q 011881 244 PLQSAEVFDPTTDA--WSEVPS-MPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTN 320 (475)
Q Consensus 244 ~~~~~~~yd~~t~~--W~~~~~-~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 320 (475)
...+..+|.+|++ |+.-.. -+...... ..+-++.++.+|+-.+..... .+-....||.+++
T Consensus 130 -dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~-------------~~sP~v~~g~v~vg~~~~~~~--~~g~v~a~D~~tG 193 (689)
T 1yiq_A 130 -DGRLEAIDAKTGQRAWSVDTRADHKRSYTI-------------TGAPRVVNGKVVIGNGGAEFG--VRGYVTAYDAETG 193 (689)
T ss_dssp -TSEEEEEETTTCCEEEEEECCSCTTSCCBC-------------CSCCEEETTEEEECCBCTTTC--CBCEEEEEETTTC
T ss_pred -CCEEEEEECCCCCEeeeecCcCCCCCCccc-------------cCCcEEECCEEEEEeCCCccC--CCCEEEEEECCCC
Confidence 2578999998875 886442 11110110 023456789998843321110 0112478999988
Q ss_pred c--eEEc
Q 011881 321 S--WVEM 325 (475)
Q Consensus 321 ~--W~~~ 325 (475)
+ |+.-
T Consensus 194 ~~~W~~~ 200 (689)
T 1yiq_A 194 KEAWRFY 200 (689)
T ss_dssp CEEEEEE
T ss_pred cEEEEec
Confidence 6 8764
No 146
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=89.37 E-value=13 Score=34.23 Aligned_cols=62 Identities=10% Similarity=-0.019 Sum_probs=33.3
Q ss_pred eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEE----CCeEEEEcCCCCCCCCeEEE
Q 011881 291 YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVL----DGELYAFDPSSSLNSAKIKV 366 (475)
Q Consensus 291 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~----~~~lyv~GG~~~~~~~~v~~ 366 (475)
.++.+++.|+.++ ....||..+.+-..... .. .....++.. ++..++.|+.+ +.+.+
T Consensus 178 ~~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~-~~-------~~v~~~~~~~~~~~~~~l~~~~~d----g~i~i 238 (357)
T 3i2n_A 178 QEERVVCAGYDNG-------DIKLFDLRNMALRWETN-IK-------NGVCSLEFDRKDISMNKLVATSLE----GKFHV 238 (357)
T ss_dssp -CCCEEEEEETTS-------EEEEEETTTTEEEEEEE-CS-------SCEEEEEESCSSSSCCEEEEEEST----TEEEE
T ss_pred CCCCEEEEEccCC-------eEEEEECccCceeeecC-CC-------CceEEEEcCCCCCCCCEEEEECCC----CeEEE
Confidence 4666666665443 23788988776433221 10 111112332 56677777633 57888
Q ss_pred EeCCC
Q 011881 367 YDQKE 371 (475)
Q Consensus 367 yd~~~ 371 (475)
||..+
T Consensus 239 ~d~~~ 243 (357)
T 3i2n_A 239 FDMRT 243 (357)
T ss_dssp EEEEE
T ss_pred EeCcC
Confidence 88765
No 147
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=89.17 E-value=6.1 Score=37.35 Aligned_cols=142 Identities=10% Similarity=0.040 Sum_probs=70.1
Q ss_pred EEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE---CCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 181 CLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL---NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 181 ~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
.+++.|+.++ .+.+||..+.+-...-..........++.+ ++++++.|+. ...+.+||..+.+
T Consensus 195 ~~~~s~~~dg-----~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~---------d~~i~~wd~~~~~ 260 (357)
T 4g56_B 195 TIFLSCGEDG-----RILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE---------TGNVSLVNIKNPD 260 (357)
T ss_dssp SCEEEEETTS-----CEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES---------SSCEEEEESSCGG
T ss_pred ceeeeeccCC-----ceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec---------ccceeEEECCCCc
Confidence 4666666543 577888877654332222222222233333 4567777764 2468889987754
Q ss_pred eEecCCCCccccCCCCccccccccccceeeEEE-eCC-EEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCC
Q 011881 258 WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-YMG-RLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPA 335 (475)
Q Consensus 258 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~ 335 (475)
=.. .+...... + .+++. .++ ++.+.|+.++ ...+||.++++-...-.
T Consensus 261 ~~~--~~~~~~~~-------------v-~~l~~sp~~~~~lasgs~D~-------~i~iwd~~~~~~~~~~~-------- 309 (357)
T 4g56_B 261 SAQ--TSAVHSQN-------------I-TGLAYSYHSSPFLASISEDC-------TVAVLDADFSEVFRDLS-------- 309 (357)
T ss_dssp GCE--EECCCSSC-------------E-EEEEECSSSSCCEEEEETTS-------CEEEECTTSCEEEEECC--------
T ss_pred EeE--EEecccee-------------E-EEEEEcCCCCCEEEEEeCCC-------EEEEEECCCCcEeEECC--------
Confidence 111 11110111 0 22222 233 4555555443 23788988776543321
Q ss_pred ccCCCeEEEE--ECCeEEEEcCCCCCCCCeEEEEeCCC
Q 011881 336 RQAGTKLSVV--LDGELYAFDPSSSLNSAKIKVYDQKE 371 (475)
Q Consensus 336 ~~~~~~~~~~--~~~~lyv~GG~~~~~~~~v~~yd~~~ 371 (475)
.......++. .++.+++.||.+ ..|.+||..+
T Consensus 310 H~~~V~~vafsP~d~~~l~s~s~D----g~v~iW~~~~ 343 (357)
T 4g56_B 310 HRDFVTGVAWSPLDHSKFTTVGWD----HKVLHHHLPS 343 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETT----SCEEEEECC-
T ss_pred CCCCEEEEEEeCCCCCEEEEEcCC----CeEEEEECCC
Confidence 0111111232 267788877754 4688888654
No 148
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=89.12 E-value=15 Score=34.56 Aligned_cols=149 Identities=12% Similarity=0.032 Sum_probs=71.0
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCC-Ccc-ceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMS-VGR-AYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDP 253 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p-~~R-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 253 (475)
..+..++.|+.+ ..+.+||..+++-....... ... ....++.+ +++.++.|+. -..+.+||.
T Consensus 91 s~d~~l~~~s~d-----g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~---------d~~i~iwd~ 156 (344)
T 4gqb_B 91 VGERGILVASDS-----GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK---------DICIKVWDL 156 (344)
T ss_dssp ETTTEEEEEETT-----SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET---------TSCEEEEET
T ss_pred eCCCeEEEEECC-----CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC---------CCeEEEEEC
Confidence 333334556543 36778888776532211100 010 11122222 6777777774 257889999
Q ss_pred CCCCeEecCCCCccccCCCCccccccccccceeeEEE-eCC-EEEEeccCCCCCceeccceEEEeCCCCceEE-cCCCCC
Q 011881 254 TTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-YMG-RLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE-MPIGMG 330 (475)
Q Consensus 254 ~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~ 330 (475)
.+++-... +...... + .+++. .++ .+++.|+.++ ...+||..+.+-.. +....
T Consensus 157 ~~~~~~~~--~~~h~~~-------------V-~~~~~~~~~~~~l~s~s~D~-------~v~iwd~~~~~~~~~~~~~~- 212 (344)
T 4gqb_B 157 AQQVVLSS--YRAHAAQ-------------V-TCVAASPHKDSVFLSCSEDN-------RILLWDTRCPKPASQIGCSA- 212 (344)
T ss_dssp TTTEEEEE--ECCCSSC-------------E-EEEEECSSCTTEEEEEETTS-------CEEEEETTSSSCEEECC----
T ss_pred CCCcEEEE--EcCcCCc-------------e-EEEEecCCCCCceeeecccc-------ccccccccccceeeeeecce-
Confidence 88753221 1110111 0 22222 233 4667666553 23788988776443 22100
Q ss_pred CCCCCccCCCeEEEE--ECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 331 EGWPARQAGTKLSVV--LDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 331 ~~~p~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
......+++. .++++++.|+.+ ..|.+||..+.+
T Consensus 213 -----~~~~~~~~~~~p~~~~~l~sg~~d----g~v~~wd~~~~~ 248 (344)
T 4gqb_B 213 -----PGYLPTSLAWHPQQSEVFVFGDEN----GTVSLVDTKSTS 248 (344)
T ss_dssp ------CCCEEEEEECSSCTTEEEEEETT----SEEEEEESCC--
T ss_pred -----eeccceeeeecCCCCcceEEeccC----CcEEEEECCCCc
Confidence 1111111222 256688887743 579999987653
No 149
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=88.99 E-value=10 Score=35.75 Aligned_cols=64 Identities=3% Similarity=-0.040 Sum_probs=36.3
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCcccee-eeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYC-KTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.+++.|+.+ ..+.+||..+.....+.......... +++.. ++++++.|+. ...+.+||....
T Consensus 130 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~ 195 (383)
T 3ei3_B 130 NTNQLFVSSIR-----GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS---------TGRLLLLGLDGH 195 (383)
T ss_dssp EEEEEEEEETT-----TEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEET---------TSEEEEEETTSC
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECC---------CCCEEEEECCCC
Confidence 34666666544 36788898877666554322111111 22222 5666677664 258899998544
No 150
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=88.80 E-value=16 Score=34.40 Aligned_cols=68 Identities=9% Similarity=0.034 Sum_probs=37.6
Q ss_pred EEEEEcCCCCCCCcceEEEEeCCCCc-------EEeCCCCCCccceeeeEEE-C----C---EEEEEeceecCCCCcccC
Q 011881 181 CLYVLGGFSRTSAMRCVRRYDPIANT-------WNEATSMSVGRAYCKTGIL-N----D---KLYVVGGVSRARGGLTPL 245 (475)
Q Consensus 181 ~lyv~GG~~~~~~~~~~~~yd~~t~~-------W~~~~~~p~~R~~~~~~~~-~----~---~iyv~GG~~~~~~~~~~~ 245 (475)
.+++.|+.+ ..+.+||..+.+ -..+..-..+ -.++... + + ++++.|+. .
T Consensus 27 ~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~g~~~~~l~s~~~---------d 90 (397)
T 1sq9_A 27 SFTVSCSGD-----GYLKVWDNKLLDNENPKDKSYSHFVHKSG--LHHVDVLQAIERDAFELCLVATTSF---------S 90 (397)
T ss_dssp SEEEEEETT-----SEEEEEESBCCTTCCGGGGEEEEECCTTC--EEEEEEEEEEETTTEEEEEEEEEET---------T
T ss_pred CeEEEEcCC-----CEEEEEECCCcccccCCCcceEEecCCCc--EEEEEEecccccCCccccEEEEEcC---------C
Confidence 566666654 367888887765 2222211111 1122222 4 6 77777764 2
Q ss_pred CeEEEEeCCCCC------eEecCCC
Q 011881 246 QSAEVFDPTTDA------WSEVPSM 264 (475)
Q Consensus 246 ~~~~~yd~~t~~------W~~~~~~ 264 (475)
..+.+||..+.. +..+...
T Consensus 91 g~i~iw~~~~~~~~~~~~~~~~~~~ 115 (397)
T 1sq9_A 91 GDLLFYRITREDETKKVIFEKLDLL 115 (397)
T ss_dssp SCEEEEEEEECTTTCCEEEEEECCS
T ss_pred CCEEEEEccCCcccccccceeeccc
Confidence 568888888776 6665443
No 151
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=88.75 E-value=0.61 Score=44.97 Aligned_cols=67 Identities=6% Similarity=0.024 Sum_probs=33.0
Q ss_pred EEEeCCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEe
Q 011881 175 IGAVDGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFD 252 (475)
Q Consensus 175 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd 252 (475)
.++.++.||+.+. + ..++.+|..+.+ |+.-. . ....+.++.++++|+.++. ...+..+|
T Consensus 5 P~v~~~~v~~gs~-d-----g~v~a~d~~tG~~~W~~~~--~--~~~s~p~~~~g~~~v~~s~---------dg~l~a~d 65 (369)
T 2hz6_A 5 VTLPETLLFVSTL-D-----GSLHAVSKRTGSIKWTLKE--D--PVLQVPTHVEEPAFLPDPN---------DGSLYTLG 65 (369)
T ss_dssp ---CTTEEEEEET-T-----SEEEEEETTTCCEEEEEEC--C--CSCCCC-----CCEEECTT---------TCCEEEC-
T ss_pred CeeeCCEEEEEcC-C-----CEEEEEECCCCCEEEEecC--C--CceecceEcCCCEEEEeCC---------CCEEEEEE
Confidence 3456777776542 2 378999988775 77543 1 1112334456778887643 24688999
Q ss_pred CCCC--CeEe
Q 011881 253 PTTD--AWSE 260 (475)
Q Consensus 253 ~~t~--~W~~ 260 (475)
.+++ .|+.
T Consensus 66 ~~tG~~~w~~ 75 (369)
T 2hz6_A 66 SKNNEGLTKL 75 (369)
T ss_dssp ----CCSEEC
T ss_pred CCCCceeeee
Confidence 8765 4664
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=88.71 E-value=2.3 Score=39.44 Aligned_cols=68 Identities=10% Similarity=0.038 Sum_probs=41.3
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CC-EEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-ND-KLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
.++.+|+.++.+ ..++++|+.+.+....-+.+.....+.++.. ++ .+|+.+.. ...+.+||+.+
T Consensus 9 ~~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~---------~~~i~~~d~~t 74 (349)
T 1jmx_B 9 AGHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH---------YGDIYGIDLDT 74 (349)
T ss_dssp TTCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT---------TTEEEEEETTT
T ss_pred CCCEEEEEeCCC-----CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC---------CCcEEEEeCCC
Confidence 467788887543 5799999998875543222221012233333 34 57877642 25799999998
Q ss_pred CCeE
Q 011881 256 DAWS 259 (475)
Q Consensus 256 ~~W~ 259 (475)
.+-.
T Consensus 75 ~~~~ 78 (349)
T 1jmx_B 75 CKNT 78 (349)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 7644
No 153
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=88.69 E-value=18 Score=34.92 Aligned_cols=181 Identities=13% Similarity=0.143 Sum_probs=96.3
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCC----cEEe-CC-CCCCccceeeeEE--ECCEEEEEeceecCCCCcccCCeEEE
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIAN----TWNE-AT-SMSVGRAYCKTGI--LNDKLYVVGGVSRARGGLTPLQSAEV 250 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~----~W~~-~~-~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ 250 (475)
++.||+.--. ...++++++... .... +. .+.. -..+++ .+++||+.-.. ...+++
T Consensus 123 ~~~lywsD~~-----~~~I~~~~~~g~~~~~~~~~~~~~~~~~---p~glavD~~~~~lY~~d~~---------~~~I~~ 185 (400)
T 3p5b_L 123 SNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQA---PDGLAVDWIHSNIYWTDSV---------LGTVSV 185 (400)
T ss_dssp TTEEEEEETT-----TTEEEEEEC------CCCEEEECSSCSC---EEEEEEETTTTEEEEEETT---------TTEEEE
T ss_pred cCceEEEecC-----CCeEEEEEcccCCCCCcceEEEeCCCCC---cccEEEEecCCceEEEECC---------CCeEEE
Confidence 6889987422 357888888652 2222 22 2221 123344 37899998542 358899
Q ss_pred EeCCCCCeEecC--CCCccccCCCCccccccccccceeeEEE--eCCEEEEeccCCCCCceeccceEEEeCCCCceEEc-
Q 011881 251 FDPTTDAWSEVP--SMPFSRAQGLPNAFFADMLKPIATGMTS--YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEM- 325 (475)
Q Consensus 251 yd~~t~~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~- 325 (475)
+|+....-+.+. .+..| .++++ .++.||+.--... ...+++++....=..+
T Consensus 186 ~~~~g~~~~~l~~~~~~~P------------------~~iavdp~~g~ly~td~~~~------~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 186 ADTKGVKRKTLFRENGSKP------------------RAIVVDPVHGFMYWTDWGTP------AKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp ECTTTCSEEEEEECSSCCE------------------EEEEEETTTTEEEEEECSSS------CCEEEEETTSCSCEEEE
T ss_pred EeCCCCceEEEEeCCCCCc------------------ceEEEecccCeEEEEeCCCC------CEEEEEeCCCCccEEEE
Confidence 999876654432 22222 23344 4788998541110 1237777765433332
Q ss_pred CCCCCCCCCCccCCCeEEEEE--CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEE
Q 011881 326 PIGMGEGWPARQAGTKLSVVL--DGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLH 403 (475)
Q Consensus 326 ~~~~~~~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~ 403 (475)
...+. +|. + +++- +++||+... ..+.|+++|.+...-+.+... + ......+++++.++.||
T Consensus 242 ~~~l~--~P~---g---lavd~~~~~lY~aD~----~~~~I~~~d~dG~~~~~~~~~-~----~~l~~P~gl~v~~~~ly 304 (400)
T 3p5b_L 242 TENIQ--WPN---G---ITLDLLSGRLYWVDS----KLHSISSIDVNGGNRKTILED-E----KRLAHPFSLAVFEDKVF 304 (400)
T ss_dssp CSSCS--CEE---E---EEEETTTTEEEEEET----TTTEEEEEETTSCCCEEEEEC-S----STTSSEEEEEEETTEEE
T ss_pred ECCCC--ceE---E---EEEEeCCCEEEEEEC----CCCEEEEEeCCCCccEEEEeC-C----CCCCCCEEEEEeCCEEE
Confidence 22111 121 1 3443 689999964 236899999876443333210 0 11123467888999999
Q ss_pred EEeecCCCCeeEEEecC
Q 011881 404 VLTKDASRNISILRADP 420 (475)
Q Consensus 404 v~GG~~~~~~~v~~~d~ 420 (475)
+.--. +.. |..+|.
T Consensus 305 wtd~~-~~~--V~~~~~ 318 (400)
T 3p5b_L 305 WTDII-NEA--IFSANR 318 (400)
T ss_dssp EEESS-SCS--EEEEES
T ss_pred EecCC-CCe--EEEEEc
Confidence 98632 222 555553
No 154
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=88.69 E-value=15 Score=33.92 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=14.7
Q ss_pred CCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 226 NDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 226 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
+++.++.|+. ...+.+||..+
T Consensus 186 ~~~~l~~~~~---------dg~i~i~d~~~ 206 (369)
T 3zwl_B 186 KGKYIIAGHK---------DGKISKYDVSN 206 (369)
T ss_dssp GGCEEEEEET---------TSEEEEEETTT
T ss_pred CCCEEEEEcC---------CCEEEEEECCC
Confidence 4566666653 25789999987
No 155
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.65 E-value=5.6 Score=42.12 Aligned_cols=146 Identities=10% Similarity=-0.032 Sum_probs=72.5
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEE-ECCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGI-LNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
++.+.++|+.+ ..+.+||..+.+....-....... .+++. -+++.+++|+. ...+.+||..+++
T Consensus 24 ~~~~la~~~~~-----g~v~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~---------dg~i~vw~~~~~~ 88 (814)
T 3mkq_A 24 TEPWVLTTLYS-----GRVEIWNYETQVEVRSIQVTETPV-RAGKFIARKNWIIVGSD---------DFRIRVFNYNTGE 88 (814)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSCE-EEEEEEGGGTEEEEEET---------TSEEEEEETTTCC
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCceEEEEecCCCcE-EEEEEeCCCCEEEEEeC---------CCeEEEEECCCCc
Confidence 45566666543 378889988876433211111111 12222 25666677763 2578999998876
Q ss_pred eEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCC-ceEEcCCCCCCCCCC
Q 011881 258 WSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTN-SWVEMPIGMGEGWPA 335 (475)
Q Consensus 258 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~~~p~ 335 (475)
....-... ... + .+++ .-++...+.|+.++ ...+||..++ .....-. .
T Consensus 89 ~~~~~~~~--~~~-------------v-~~~~~s~~~~~l~~~~~dg-------~i~vw~~~~~~~~~~~~~-~------ 138 (814)
T 3mkq_A 89 KVVDFEAH--PDY-------------I-RSIAVHPTKPYVLSGSDDL-------TVKLWNWENNWALEQTFE-G------ 138 (814)
T ss_dssp EEEEEECC--SSC-------------E-EEEEECSSSSEEEEEETTS-------EEEEEEGGGTSEEEEEEE-C------
T ss_pred EEEEEecC--CCC-------------E-EEEEEeCCCCEEEEEcCCC-------EEEEEECCCCceEEEEEc-C------
Confidence 54321101 010 0 2222 23555555555432 2367888765 2222211 0
Q ss_pred ccCCCeEEEEE--CCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 336 RQAGTKLSVVL--DGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 336 ~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
.......++.. ++.+++.|+.+ ..|.+||..+.+
T Consensus 139 ~~~~v~~~~~~p~~~~~l~~~~~d----g~v~vwd~~~~~ 174 (814)
T 3mkq_A 139 HEHFVMCVAFNPKDPSTFASGCLD----RTVKVWSLGQST 174 (814)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETT----SEEEEEETTCSS
T ss_pred CCCcEEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCc
Confidence 00111112333 46677777643 579999986543
No 156
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=88.52 E-value=10 Score=39.60 Aligned_cols=127 Identities=13% Similarity=0.177 Sum_probs=71.4
Q ss_pred eeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCC--eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEe
Q 011881 221 KTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA--WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVP 298 (475)
Q Consensus 221 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~ 298 (475)
+-++.+++||+... ...++.+|..|.+ |+.-...+....... ....+..+.++.+++||+.
T Consensus 61 ~P~v~~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~v~ 123 (668)
T 1kv9_A 61 TPLFHDGVIYTSMS----------WSRVIAVDAASGKELWRYDPEVAKVKARTS-------CCDAVNRGVALWGDKVYVG 123 (668)
T ss_dssp CCEEETTEEEEEEG----------GGEEEEEETTTCCEEEEECCCCCGGGGGGC-------TTCSCCCCCEEEBTEEEEE
T ss_pred CCEEECCEEEEECC----------CCeEEEEECCCChhceEECCCCCccccccc-------cccCCccceEEECCEEEEE
Confidence 44578999999865 2478999988775 987544332110000 0000003445678999884
Q ss_pred ccCCCCCceeccceEEEeCCCCc--eEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCC-CCCCeEEEEeCCCCc--
Q 011881 299 QSLYSWPFFVDVGGEIYDPDTNS--WVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSS-LNSAKIKVYDQKEDT-- 373 (475)
Q Consensus 299 GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~-~~~~~v~~yd~~~~~-- 373 (475)
.. + -....+|.++++ |+.-..... ......+..++.++++|+..+... .....++.||+++.+
T Consensus 124 ~~-d-------g~l~alD~~tG~~~W~~~~~~~~----~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 191 (668)
T 1kv9_A 124 TL-D-------GRLIALDAKTGKAIWSQQTTDPA----KPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLA 191 (668)
T ss_dssp CT-T-------SEEEEEETTTCCEEEEEECSCTT----SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred cC-C-------CEEEEEECCCCCEeeeeccCCCC----CcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence 32 1 123789998875 886432111 011111113567888887533211 123589999998765
Q ss_pred EEE
Q 011881 374 WKV 376 (475)
Q Consensus 374 W~~ 376 (475)
|+.
T Consensus 192 W~~ 194 (668)
T 1kv9_A 192 WRF 194 (668)
T ss_dssp EEE
T ss_pred EEe
Confidence 876
No 157
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=88.49 E-value=16 Score=33.99 Aligned_cols=148 Identities=12% Similarity=0.178 Sum_probs=71.8
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCCccceee-eEE-ECCEEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSVGRAYCK-TGI-LNDKLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~R~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
++.+++.||.+ ..+.+||..+.. .+....+........ +.. -++++ +.|+. -..+.+||..
T Consensus 108 ~~~~l~s~~~d-----~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l-~s~s~---------d~~i~~wd~~ 172 (340)
T 1got_B 108 SGNYVACGGLD-----NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI-VTSSG---------DTTCALWDIE 172 (340)
T ss_dssp TSSEEEEEETT-----CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEE-EEEET---------TSCEEEEETT
T ss_pred CCCEEEEEeCC-----CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcE-EEEEC---------CCcEEEEECC
Confidence 45566677654 367788877643 111111111011111 222 25564 44442 2578899998
Q ss_pred CCCeEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCC
Q 011881 255 TDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGW 333 (475)
Q Consensus 255 t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~ 333 (475)
+.+-... +...... + .+++ .-++++++.|+.++. ...||+.+++-...-...
T Consensus 173 ~~~~~~~--~~~h~~~-------------v-~~~~~~~~~~~l~sg~~d~~-------v~~wd~~~~~~~~~~~~h---- 225 (340)
T 1got_B 173 TGQQTTT--FTGHTGD-------------V-MSLSLAPDTRLFVSGACDAS-------AKLWDVREGMCRQTFTGH---- 225 (340)
T ss_dssp TTEEEEE--ECCCSSC-------------E-EEEEECTTSSEEEEEETTSC-------EEEEETTTCSEEEEECCC----
T ss_pred CCcEEEE--EcCCCCc-------------e-EEEEECCCCCEEEEEeCCCc-------EEEEECCCCeeEEEEcCC----
Confidence 8754321 1100011 0 2222 235677777775542 378898776543221100
Q ss_pred CCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcE
Q 011881 334 PARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTW 374 (475)
Q Consensus 334 p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W 374 (475)
...-.+.+...++.+++.|+.+ ..+.+||..+.+-
T Consensus 226 --~~~v~~v~~~p~~~~l~s~s~d----~~v~iwd~~~~~~ 260 (340)
T 1got_B 226 --ESDINAICFFPNGNAFATGSDD----ATCRLFDLRADQE 260 (340)
T ss_dssp --SSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEE
T ss_pred --cCCEEEEEEcCCCCEEEEEcCC----CcEEEEECCCCcE
Confidence 0000111122367777777743 5799999987653
No 158
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=88.49 E-value=9.9 Score=35.79 Aligned_cols=152 Identities=11% Similarity=-0.047 Sum_probs=76.9
Q ss_pred cceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCE-EEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccC
Q 011881 194 MRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDK-LYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQ 270 (475)
Q Consensus 194 ~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~ 270 (475)
...++++|+.+.+.+.+..-+ ......... +++ |++... . ........++.+|..+..++.+.. ..+...
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~~--~~~~~~~~sp~dg~~l~~~~~-~---~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~ 239 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQDT--AWLGHPIYRPFDDSTVGFCHE-G---PHDLVDARMWLVNEDGSNVRKIKE-HAEGES 239 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEES--SCEEEEEEETTEEEEEEEEEC-S---CSSSCSCCCEEEETTSCCCEESSC-CCTTEE
T ss_pred cceEEEEECCCCcEEeeccCC--cccccceECCCCCCEEEEEec-C---CCCCCCceEEEEECCCCceeEeec-cCCCcc
Confidence 457899999988877664211 111122222 344 444432 1 111122578999998888777654 111111
Q ss_pred CCCccccccccccceeeEEEeCCE-EEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEE-CC
Q 011881 271 GLPNAFFADMLKPIATGMTSYMGR-LCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVL-DG 348 (475)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~-~~ 348 (475)
. ......-+|+ |++.....+.. ....+++|+.+++...+.. . +.. ...... ++
T Consensus 240 ~-------------~~~~~spdg~~l~~~~~~~~~~---~~~l~~~d~~~g~~~~l~~-~----~~~----~~~~s~~dg 294 (396)
T 3c5m_A 240 C-------------THEFWIPDGSAMAYVSYFKGQT---DRVIYKANPETLENEEVMV-M----PPC----SHLMSNFDG 294 (396)
T ss_dssp E-------------EEEEECTTSSCEEEEEEETTTC---CEEEEEECTTTCCEEEEEE-C----CSE----EEEEECSSS
T ss_pred c-------------cceEECCCCCEEEEEecCCCCc---cceEEEEECCCCCeEEeee-C----CCC----CCCccCCCC
Confidence 0 0112223454 43332111110 0114788998888776543 1 111 123444 77
Q ss_pred eEEEEcCCC------------CCCCCeEEEEeCCCCcEEEc
Q 011881 349 ELYAFDPSS------------SLNSAKIKVYDQKEDTWKVV 377 (475)
Q Consensus 349 ~lyv~GG~~------------~~~~~~v~~yd~~~~~W~~v 377 (475)
+++++.+.. ......++.+|+.+++...+
T Consensus 295 ~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 335 (396)
T 3c5m_A 295 SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKL 335 (396)
T ss_dssp SEEEEEECCC----------CCCCCCEEEEEETTTTBCCEE
T ss_pred ceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEc
Confidence 777764421 11236899999988876655
No 159
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=88.39 E-value=15 Score=33.58 Aligned_cols=62 Identities=13% Similarity=-0.038 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCC--CCcEEeCCCCCCccceeeeEEE-CC-EEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPI--ANTWNEATSMSVGRAYCKTGIL-ND-KLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~--t~~W~~~~~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
+..||+.+..+ ..+.+||.. +.+++.+..++....-..++.. ++ .||+.+.. ...+.+||..
T Consensus 49 g~~l~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---------~~~i~~~d~~ 114 (343)
T 1ri6_A 49 KRYLYVGVRPE-----FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN---------AGNVSVTRLE 114 (343)
T ss_dssp SSEEEEEETTT-----TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT---------TTEEEEEEEE
T ss_pred CCEEEEeecCC-----CeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecC---------CCeEEEEECC
Confidence 34466654321 456666665 7787766544322222223332 34 56666531 2468888874
No 160
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=88.26 E-value=3.1 Score=46.74 Aligned_cols=142 Identities=8% Similarity=0.030 Sum_probs=65.9
Q ss_pred eEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCcc
Q 011881 196 CVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNA 275 (475)
Q Consensus 196 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~ 275 (475)
.+.+||..+.+-...-..........+..-+++.++.|+.+ ..+.+||..+.+ .+..+......
T Consensus 1066 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d---------~~v~iwd~~~~~--~~~~l~~h~~~----- 1129 (1249)
T 3sfz_A 1066 TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD---------KTAKIWSFDLLS--PLHELKGHNGC----- 1129 (1249)
T ss_dssp EEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCS---------SCCCEECSSSSS--CSBCCCCCSSC-----
T ss_pred cEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCC---------CcEEEEECCCcc--eeeeeccCCCc-----
Confidence 68888887765322111111111111112256677777642 457788877654 12222111111
Q ss_pred ccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCC--CCCCccC-CCeEEEEECCeEEE
Q 011881 276 FFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGE--GWPARQA-GTKLSVVLDGELYA 352 (475)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--~~p~~~~-~~~~~~~~~~~lyv 352 (475)
+......-++++.+.|+.++. ..+||..+++-...-.+... ....... -...+..-++++++
T Consensus 1130 --------v~~~~~s~dg~~lat~~~dg~-------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~ 1194 (1249)
T 3sfz_A 1130 --------VRCSAFSLDGILLATGDDNGE-------IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV 1194 (1249)
T ss_dssp --------EEEEEECSSSSEEEEEETTSC-------CCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEE
T ss_pred --------EEEEEECCCCCEEEEEeCCCE-------EEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEE
Confidence 001222346777777775542 37788877654322110100 0000111 11112234566666
Q ss_pred EcCCCCCCCCeEEEEeCCCCcE
Q 011881 353 FDPSSSLNSAKIKVYDQKEDTW 374 (475)
Q Consensus 353 ~GG~~~~~~~~v~~yd~~~~~W 374 (475)
.+| +.+.+||..+++-
T Consensus 1195 s~~------g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1195 SAG------GYLKWWNVATGDS 1210 (1249)
T ss_dssp EES------SSEEEBCSSSCBC
T ss_pred ECC------CeEEEEECCCCce
Confidence 654 4789999887654
No 161
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=88.18 E-value=19 Score=34.54 Aligned_cols=180 Identities=15% Similarity=0.153 Sum_probs=99.4
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCC--CCCCccceeeeEE--ECCEEEEEeceecCCCCcccCCeEEEEeC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEAT--SMSVGRAYCKTGI--LNDKLYVVGGVSRARGGLTPLQSAEVFDP 253 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 253 (475)
.++.||+.-- ....++++++.....+.+. .+..| ..+++ .+++||+.-.. ...++++++
T Consensus 126 ~~~~ly~~D~-----~~~~I~r~~~~g~~~~~~~~~~~~~p---~glavd~~~g~lY~~d~~---------~~~I~~~~~ 188 (386)
T 3v65_B 126 RRELVFWSDV-----TLDRILRANLNGSNVEEVVSTGLESP---GGLAVDWVHDKLYWTDSG---------TSRIEVANL 188 (386)
T ss_dssp TTTEEEEEET-----TTTEEEEEETTSCCEEEEECSSCSCC---CCEEEETTTTEEEEEETT---------TTEEEECBT
T ss_pred CCCeEEEEeC-----CCCcEEEEecCCCCcEEEEeCCCCCc---cEEEEEeCCCeEEEEcCC---------CCeEEEEeC
Confidence 3688998742 2357899999887765542 22222 23333 37899998542 357888888
Q ss_pred CCCCeEec--CCCCccccCCCCccccccccccceeeEEE--eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcC-CC
Q 011881 254 TTDAWSEV--PSMPFSRAQGLPNAFFADMLKPIATGMTS--YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMP-IG 328 (475)
Q Consensus 254 ~t~~W~~~--~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~ 328 (475)
....-+.+ ..+..| .++++ .++.||+.--... ...+++|+....=..+. ..
T Consensus 189 dg~~~~~l~~~~l~~P------------------~giavdp~~g~ly~td~~~~------~~I~r~~~dG~~~~~~~~~~ 244 (386)
T 3v65_B 189 DGAHRKVLLWQSLEKP------------------RAIALHPMEGTIYWTDWGNT------PRIEASSMDGSGRRIIADTH 244 (386)
T ss_dssp TSCSCEEEECSSCSCE------------------EEEEEETTTTEEEEEECSSS------CEEEEEETTSCSCEEEECSS
T ss_pred CCCceEEeecCCCCCC------------------cEEEEEcCCCeEEEeccCCC------CEEEEEeCCCCCcEEEEECC
Confidence 76543332 122222 23344 3788998532110 12378888754433332 21
Q ss_pred CCCCCCCccCCCeEEEE--ECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEe
Q 011881 329 MGEGWPARQAGTKLSVV--LDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLT 406 (475)
Q Consensus 329 ~~~~~p~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~G 406 (475)
+. +|. + +++ .+++||+... ..+.|+++|++...-+.+.. .. .....++++.++.||+.-
T Consensus 245 ~~--~Pn---G---lavd~~~~~lY~aD~----~~~~I~~~d~dG~~~~~~~~----~~---~~~P~giav~~~~ly~td 305 (386)
T 3v65_B 245 LF--WPN---G---LTIDYAGRRMYWVDA----KHHVIERANLDGSHRKAVIS----QG---LPHPFAITVFEDSLYWTD 305 (386)
T ss_dssp CS--CEE---E---EEEEGGGTEEEEEET----TTTEEEEECTTSCSCEEEEC----SS---CSSEEEEEEETTEEEEEE
T ss_pred CC--Cee---e---EEEeCCCCEEEEEEC----CCCEEEEEeCCCCeeEEEEE----CC---CCCceEEEEECCEEEEee
Confidence 11 121 1 344 3789999964 23689999987543222211 01 123367777899999976
Q ss_pred ecCCCCeeEEEecC
Q 011881 407 KDASRNISILRADP 420 (475)
Q Consensus 407 G~~~~~~~v~~~d~ 420 (475)
-. +. .|..+|.
T Consensus 306 ~~-~~--~V~~~~~ 316 (386)
T 3v65_B 306 WH-TK--SINSANK 316 (386)
T ss_dssp TT-TT--EEEEEET
T ss_pred CC-CC--eEEEEEC
Confidence 32 22 2555553
No 162
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=87.90 E-value=18 Score=34.12 Aligned_cols=158 Identities=9% Similarity=-0.040 Sum_probs=74.1
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCCc------EE-eCCCCCCcccee-eeEEE-C-CEEEEEeceecCCCCcccCCeEE
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIANT------WN-EATSMSVGRAYC-KTGIL-N-DKLYVVGGVSRARGGLTPLQSAE 249 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~~------W~-~~~~~p~~R~~~-~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~ 249 (475)
+.+++.|+.+ ..+.+||..+.+ -. .+.......... +++.. + +.+++.|+. ...+.
T Consensus 126 ~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~v~ 191 (416)
T 2pm9_A 126 DNVLASGGNN-----GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS---------SNFAS 191 (416)
T ss_dssp TTBEEEECSS-----SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS---------SSCEE
T ss_pred CCEEEEEcCC-----CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC---------CCCEE
Confidence 5666677654 357888887765 11 111111111111 22222 2 567777764 25789
Q ss_pred EEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEe-CC-EEEEeccCCCCCceeccceEEEeCCCCceEEcCC
Q 011881 250 VFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY-MG-RLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPI 327 (475)
Q Consensus 250 ~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~ 327 (475)
+||..+.+-...-..+....+... . ..+++.. ++ .+++.|+.++... ...+||..+..-. +..
T Consensus 192 iwd~~~~~~~~~~~~~~~~~~~~~---------~-v~~~~~~~~~~~~l~~~~~d~~~~----~i~~~d~~~~~~~-~~~ 256 (416)
T 2pm9_A 192 IWDLKAKKEVIHLSYTSPNSGIKQ---------Q-LSVVEWHPKNSTRVATATGSDNDP----SILIWDLRNANTP-LQT 256 (416)
T ss_dssp EEETTTTEEEEEECCCCCSSCCCC---------C-EEEEEECSSCTTEEEEEECCSSSC----CCCEEETTSTTSC-SBC
T ss_pred EEECCCCCcceEEeccccccccCC---------c-eEEEEECCCCCCEEEEEECCCCCc----eEEEEeCCCCCCC-cEE
Confidence 999988764432222111000000 0 0233332 23 4666666543110 2378888765311 111
Q ss_pred CCCCCCCCccCCCeEEEEE--CCeEEEEcCCCCCCCCeEEEEeCCCCcE
Q 011881 328 GMGEGWPARQAGTKLSVVL--DGELYAFDPSSSLNSAKIKVYDQKEDTW 374 (475)
Q Consensus 328 ~~~~~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~W 374 (475)
+.. ........++.. ++.+++.|+.+ +.+.+||..+.+-
T Consensus 257 -~~~---~~~~~v~~~~~s~~~~~~l~s~~~d----g~v~~wd~~~~~~ 297 (416)
T 2pm9_A 257 -LNQ---GHQKGILSLDWCHQDEHLLLSSGRD----NTVLLWNPESAEQ 297 (416)
T ss_dssp -CCS---CCSSCEEEEEECSSCSSCEEEEESS----SEEEEECSSSCCE
T ss_pred -eec---CccCceeEEEeCCCCCCeEEEEeCC----CCEEEeeCCCCcc
Confidence 100 011111112222 67777777743 5799999887653
No 163
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=87.76 E-value=17 Score=33.62 Aligned_cols=171 Identities=13% Similarity=0.135 Sum_probs=90.4
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCC----CcEEeC-C-CCCCccceeeeEE--ECCEEEEEeceecCCCCcccCCeEEE
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIA----NTWNEA-T-SMSVGRAYCKTGI--LNDKLYVVGGVSRARGGLTPLQSAEV 250 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t----~~W~~~-~-~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ 250 (475)
++.||+.... ...++++|+.+ ..-+.+ + .+..| ..+++ .+++||+.-.. ...+++
T Consensus 41 ~~~ly~~D~~-----~~~I~~~~~~g~~~~~~~~~~~~~~~~~p---~glavd~~~~~ly~~d~~---------~~~I~~ 103 (316)
T 1ijq_A 41 SNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDSV---------LGTVSV 103 (316)
T ss_dssp TTEEEEEETT-----TTEEEEEEC--------CEEEECSSCSCC---CEEEEETTTTEEEEEETT---------TTEEEE
T ss_pred CCEEEEEECC-----CCcEEEEECCCCCCCcccEEEEeCCCCCc---CEEEEeecCCeEEEEECC---------CCEEEE
Confidence 6789988532 35788999876 222222 1 22222 23444 47899997432 367889
Q ss_pred EeCCCCCeEecC--CCCccccCCCCccccccccccceeeEEE--eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcC
Q 011881 251 FDPTTDAWSEVP--SMPFSRAQGLPNAFFADMLKPIATGMTS--YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMP 326 (475)
Q Consensus 251 yd~~t~~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~ 326 (475)
+|+....-+.+. .+..| .++++ .++.||+..-... -..+++++....=+.+.
T Consensus 104 ~~~~g~~~~~~~~~~~~~P------------------~~iavdp~~g~ly~~d~~~~------~~I~~~~~dG~~~~~~~ 159 (316)
T 1ijq_A 104 ADTKGVKRKTLFRENGSKP------------------RAIVVDPVHGFMYWTDWGTP------AKIKKGGLNGVDIYSLV 159 (316)
T ss_dssp EETTSSSEEEEEECTTCCE------------------EEEEEETTTTEEEEEECSSS------CEEEEEETTSCCEEEEE
T ss_pred EeCCCCceEEEEECCCCCc------------------ceEEeCCCCCEEEEEccCCC------CeEEEEcCCCCCeEEEE
Confidence 998765433321 22222 23344 4788998642110 12377887654433332
Q ss_pred CCCCCCCCCccCCCeEEEEE--CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEE
Q 011881 327 IGMGEGWPARQAGTKLSVVL--DGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHV 404 (475)
Q Consensus 327 ~~~~~~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v 404 (475)
. ....+|. + +++. +++||+.... .+.|+++|++...-+.+... + .......++++.++.||+
T Consensus 160 ~-~~~~~P~---g---la~d~~~~~lY~~D~~----~~~I~~~d~dg~~~~~~~~~-~----~~~~~P~giav~~~~ly~ 223 (316)
T 1ijq_A 160 T-ENIQWPN---G---ITLDLLSGRLYWVDSK----LHSISSIDVNGGNRKTILED-E----KRLAHPFSLAVFEDKVFW 223 (316)
T ss_dssp C-SSCSCEE---E---EEEETTTTEEEEEETT----TTEEEEEETTSCSCEEEEEC-T----TTTSSEEEEEEETTEEEE
T ss_pred E-CCCCCce---E---EEEeccCCEEEEEECC----CCeEEEEecCCCceEEEeec-C----CccCCcEEEEEECCEEEE
Confidence 1 1111111 1 3443 6899998642 36899999875433333110 0 111234577778899998
Q ss_pred Ee
Q 011881 405 LT 406 (475)
Q Consensus 405 ~G 406 (475)
.-
T Consensus 224 ~d 225 (316)
T 1ijq_A 224 TD 225 (316)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 164
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=87.70 E-value=22 Score=37.22 Aligned_cols=172 Identities=13% Similarity=0.131 Sum_probs=86.8
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCC----CcEEeC-C-CCCCccceeeeEE--ECCEEEEEeceecCCCCcccCCeEEE
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIA----NTWNEA-T-SMSVGRAYCKTGI--LNDKLYVVGGVSRARGGLTPLQSAEV 250 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t----~~W~~~-~-~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ 250 (475)
++.||+.--. ...++++++.+ ..-..+ . .+..| .++++ .+++||+.-. ....+++
T Consensus 417 ~~~Ly~sD~~-----~~~I~~~~~~g~~~~~~~~~~i~~~~~~P---~glavD~~~g~LY~tD~---------~~~~I~v 479 (699)
T 1n7d_A 417 SNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDS---------VLGTVSV 479 (699)
T ss_dssp TTEEEECCTT-----TTSBEEEESCCCCC-CCCCCBCCSCC--C---CCEECCCSSSBCEECCT---------TTSCEEE
T ss_pred cCeEEEEecC-----CCeEEEEecCCCCCCcceEEEEeCCCCCc---ceEEEEeeCCcEEEEec---------cCCeEEE
Confidence 6789887321 34688888875 111111 1 11111 12333 4678998632 1357889
Q ss_pred EeCCCCCeEecCC--CCccccCCCCccccccccccceeeEEE--eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcC
Q 011881 251 FDPTTDAWSEVPS--MPFSRAQGLPNAFFADMLKPIATGMTS--YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMP 326 (475)
Q Consensus 251 yd~~t~~W~~~~~--~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~ 326 (475)
+|+....-+.+.. +..| .++++ .++.||+..-... -..+++++....-..+.
T Consensus 480 ~d~dg~~~~~l~~~~~~~P------------------~giavDp~~g~ly~td~~~~------~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 480 ADTKGVKRKTLFREQGSKP------------------RAIVVDPVHGFMYWTDWGTP------AKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp EBSSSCCEEEECCCSSCCC------------------CCEECCSSSSCCEECCCSSS------CCEEBCCSSSCCCCEES
T ss_pred EecCCCceEEEEeCCCCCc------------------ceEEEccCCCcEEEcccCCC------CeEEEEeCCCCCeeEEE
Confidence 9987765444322 2222 22333 3678887531110 11256666543333322
Q ss_pred CCCCCCCCCccCCCeEEEE--ECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEE
Q 011881 327 IGMGEGWPARQAGTKLSVV--LDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHV 404 (475)
Q Consensus 327 ~~~~~~~p~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v 404 (475)
. ....+|. + +++ .+++||+.... .+.|+++|+....-+.+.... .......++++.+++||+
T Consensus 536 ~-~~l~~Pn---G---lavd~~~~~LY~aD~~----~~~I~~~d~dG~~~~~~~~~~-----~~~~~P~glavd~~~lyw 599 (699)
T 1n7d_A 536 T-ENIQWPN---G---ITLDLLSGRLYWVDSK----LHSISSIDVNGGNRKTILEDE-----KRLAHPFSLAVFEDKVFW 599 (699)
T ss_dssp C-SSCSSCC---C---EEECTTTCCEEEEETT----TTEEEEECSSSSCCEEECCCS-----SSCSSCCCCEEETTEEEE
T ss_pred e-CCCCCcc---E---EEEeccCCEEEEEecC----CCeEEEEccCCCceEEEEecC-----CcCCCceEeEEECCEEEE
Confidence 1 0111121 1 344 36889998642 368999999764433332110 111223566778889998
Q ss_pred Eee
Q 011881 405 LTK 407 (475)
Q Consensus 405 ~GG 407 (475)
.-.
T Consensus 600 td~ 602 (699)
T 1n7d_A 600 TDI 602 (699)
T ss_dssp ECS
T ss_pred EeC
Confidence 873
No 165
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=87.57 E-value=4.6 Score=37.60 Aligned_cols=70 Identities=13% Similarity=0.221 Sum_probs=37.7
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCC--CcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIA--NTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t--~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
++..++.|+.++ .+.+||... ..++.+..+.........+.+ ++.+++.|+.+ ..+.+||..
T Consensus 118 ~g~~las~s~D~-----~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D---------~~i~iW~~~ 183 (330)
T 2hes_X 118 DGYYLATCSRDK-----SVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD---------DTVRIWKDY 183 (330)
T ss_dssp TSCEEEEEETTS-----CEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT---------SCEEEEEEE
T ss_pred CCCEEEEEeCCC-----EEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC---------CeEEEEECC
Confidence 556666676543 577788742 334433222211111222233 56677777642 467888887
Q ss_pred CCCeEecC
Q 011881 255 TDAWSEVP 262 (475)
Q Consensus 255 t~~W~~~~ 262 (475)
++.|+.+.
T Consensus 184 ~~~~~~~~ 191 (330)
T 2hes_X 184 DDDWECVA 191 (330)
T ss_dssp TTEEEEEE
T ss_pred CCCeeEEE
Confidence 77776543
No 166
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=87.57 E-value=10 Score=39.74 Aligned_cols=127 Identities=16% Similarity=0.246 Sum_probs=71.4
Q ss_pred eeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCC--eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEe
Q 011881 221 KTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA--WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVP 298 (475)
Q Consensus 221 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~ 298 (475)
+-++.+++||+... ...++.+|..|++ |+.-...+....... ....+..+.++.+++||+.
T Consensus 65 ~P~v~~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~v~v~ 127 (689)
T 1yiq_A 65 TPIVVDGVMYTTGP----------FSVVYALDARDGRLIWKYDPQSDRHRAGEA-------CCDAVNRGVAVWKGKVYVG 127 (689)
T ss_dssp CCEEETTEEEEECG----------GGCEEEEETTTCCEEEEECCCCCGGGGGGC-------TTCSCCCCCEEETTEEEEE
T ss_pred cCEEECCEEEEEcC----------CCeEEEEECCCCceeEEEcCCCCccccccc-------cccCCCCccEEECCEEEEE
Confidence 44568999999764 2468999998875 986543332110000 0000003446678999885
Q ss_pred ccCCCCCceeccceEEEeCCCCc--eEEcCC-CCCCCCCCccCCCeEEEEECCeEEEEcCCCC-CCCCeEEEEeCCCCc-
Q 011881 299 QSLYSWPFFVDVGGEIYDPDTNS--WVEMPI-GMGEGWPARQAGTKLSVVLDGELYAFDPSSS-LNSAKIKVYDQKEDT- 373 (475)
Q Consensus 299 GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~-~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~-~~~~~v~~yd~~~~~- 373 (475)
.. + -....+|.++++ |+.-.. .... .... .+.-++.++++|+-.+... .....++.||.++.+
T Consensus 128 ~~-d-------g~l~AlDa~TG~~~W~~~~~~~~~~--~~~~--~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~ 195 (689)
T 1yiq_A 128 VL-D-------GRLEAIDAKTGQRAWSVDTRADHKR--SYTI--TGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKE 195 (689)
T ss_dssp CT-T-------SEEEEEETTTCCEEEEEECCSCTTS--CCBC--CSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred cc-C-------CEEEEEECCCCCEeeeecCcCCCCC--Cccc--cCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcE
Confidence 42 1 123789998875 886432 1110 0111 1113567898888532211 123589999998875
Q ss_pred -EEE
Q 011881 374 -WKV 376 (475)
Q Consensus 374 -W~~ 376 (475)
|+.
T Consensus 196 ~W~~ 199 (689)
T 1yiq_A 196 AWRF 199 (689)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 875
No 167
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=87.50 E-value=16 Score=33.03 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=41.9
Q ss_pred eCCEEEEEcCCC--CCCCcceEEEEeCCCCcEEeCCCC--C-CccceeeeEEE-C-CEEEEEeceecCCCCcccCCeEEE
Q 011881 178 VDGCLYVLGGFS--RTSAMRCVRRYDPIANTWNEATSM--S-VGRAYCKTGIL-N-DKLYVVGGVSRARGGLTPLQSAEV 250 (475)
Q Consensus 178 ~~~~lyv~GG~~--~~~~~~~~~~yd~~t~~W~~~~~~--p-~~R~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~ 250 (475)
.++.||+..... .......+.+||+.+.+++.+... . ....-..++.. + ++||+.... ..+.+
T Consensus 27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~----------~~l~~ 96 (314)
T 1pjx_A 27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR----------LGLLV 96 (314)
T ss_dssp TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT----------TEEEE
T ss_pred CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC----------CCEEE
Confidence 367888871100 001124799999999888765320 0 11112233332 4 789987641 36889
Q ss_pred EeCCCCCeEec
Q 011881 251 FDPTTDAWSEV 261 (475)
Q Consensus 251 yd~~t~~W~~~ 261 (475)
||+. ++...+
T Consensus 97 ~d~~-g~~~~~ 106 (314)
T 1pjx_A 97 VQTD-GTFEEI 106 (314)
T ss_dssp EETT-SCEEEC
T ss_pred EeCC-CCEEEE
Confidence 9998 777665
No 168
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=87.46 E-value=13 Score=35.29 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=34.8
Q ss_pred CeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEe-C-CeEEEEeecCCCCeeEEEecCCC
Q 011881 348 GELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAF-H-GKLHVLTKDASRNISILRADPRD 422 (475)
Q Consensus 348 ~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~-~~l~v~GG~~~~~~~v~~~d~~~ 422 (475)
+.+++.|+.+ ..+.+||..+.+-..... .+............++.. + ..+++.|+..+..-.+..+|+..
T Consensus 178 ~~~l~~~~~d----g~v~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 178 AHVFASAGSS----NFASIWDLKAKKEVIHLS-YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp TTEEEEESSS----SCEEEEETTTTEEEEEEC-CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred CcEEEEEcCC----CCEEEEECCCCCcceEEe-ccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 5677777643 579999998876543211 000000001122233332 2 35777777665322345555543
No 169
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=87.17 E-value=18 Score=33.21 Aligned_cols=152 Identities=11% Similarity=0.098 Sum_probs=74.8
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-C---CEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-N---DKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~---~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
..+++.|+... .-..+.+||..+.+............-.+++.. + +.+++.|+. ...+.+||..+
T Consensus 31 ~~l~~~~s~~~--~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~ 99 (357)
T 3i2n_A 31 AKFVTMGNFAR--GTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF---------GGNLHIWNLEA 99 (357)
T ss_dssp SEEEEEEC--C--CCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET---------TSCEEEECTTS
T ss_pred ceEEEecCccC--CCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC---------CCeEEEEeCCC
Confidence 36666765421 124788889888776544222111111122222 2 467777764 25788899887
Q ss_pred CC--eEecCCCCccccCCCCccccccccccceeeEE-------EeCCEEEEeccCCCCCceeccceEEEeCCCCc--eEE
Q 011881 256 DA--WSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-------SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNS--WVE 324 (475)
Q Consensus 256 ~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~ 324 (475)
.. -..+.....+. .++. .-++.+.+.|+.++ ...+||+.+.+ ...
T Consensus 100 ~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~s~~~~~l~~~~~d~-------~i~vwd~~~~~~~~~~ 155 (357)
T 3i2n_A 100 PEMPVYSVKGHKEII-----------------NAIDGIGGLGIGEGAPEIVTGSRDG-------TVKVWDPRQKDDPVAN 155 (357)
T ss_dssp CSSCSEEECCCSSCE-----------------EEEEEESGGGCC-CCCEEEEEETTS-------CEEEECTTSCSSCSEE
T ss_pred CCccEEEEEecccce-----------------EEEeeccccccCCCccEEEEEeCCC-------eEEEEeCCCCCCccee
Confidence 64 12221111100 1111 23555666666543 23788888765 333
Q ss_pred cCCCCCCCCCCccCCCeEEE-----EECCeEEEEcCCCCCCCCeEEEEeCCCCcE
Q 011881 325 MPIGMGEGWPARQAGTKLSV-----VLDGELYAFDPSSSLNSAKIKVYDQKEDTW 374 (475)
Q Consensus 325 ~~~~~~~~~p~~~~~~~~~~-----~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W 374 (475)
+...... .......++ ..++.+++.|+.+ ..+.+||..+.+-
T Consensus 156 ~~~~~~~----~~~~v~~~~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~ 202 (357)
T 3i2n_A 156 MEPVQGE----NKRDCWTVAFGNAYNQEERVVCAGYDN----GDIKLFDLRNMAL 202 (357)
T ss_dssp ECCCTTS----CCCCEEEEEEECCCC-CCCEEEEEETT----SEEEEEETTTTEE
T ss_pred ccccCCC----CCCceEEEEEEeccCCCCCEEEEEccC----CeEEEEECccCce
Confidence 3321110 000111111 1467777777643 5899999988764
No 170
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=86.84 E-value=17 Score=38.32 Aligned_cols=109 Identities=10% Similarity=0.089 Sum_probs=62.3
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
.++.||+.. .+-+.+||+.+++++...... ...-.+....++.|++... ..+.+||+.+++
T Consensus 72 ~~g~lWigT-------~~Gl~~yd~~~~~f~~~~~~~-~~~i~~i~~~~g~lWigt~-----------~Gl~~~~~~~~~ 132 (758)
T 3ott_A 72 DNTYLYMGT-------DNGILVYNYRADRYEQPETDF-PTDVRTMALQGDTLWLGAL-----------NGLYTYQLQSRK 132 (758)
T ss_dssp TTTEEEEEE-------TTEEEEEETTTTEECCCSCCC-CSCEEEEEEETTEEEEEET-----------TEEEEEETTTCC
T ss_pred CCCcEEEEe-------CCCeEEEeCCCCEEECcccCC-CceEEEEEecCCcEEEEcC-----------CcceeEeCCCCe
Confidence 467788753 135789999998887521111 1111123335788887421 368899999988
Q ss_pred eEecCCCCccccCCCCccccccccccceeeEEEe-CCEEEEeccCCCCCceeccceEEEeCCCCceEEcC
Q 011881 258 WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY-MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMP 326 (475)
Q Consensus 258 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~ 326 (475)
.+.+...+..... . ...++..- ++.|+|... .|..+||+.+++++.+.
T Consensus 133 ~~~~~~~~~~l~~----~--------~i~~i~~d~~g~lWigt~---------~Gl~~~~~~~~~~~~~~ 181 (758)
T 3ott_A 133 LTSFDTRRNGLPN----N--------TIYSIIRTKDNQIYVGTY---------NGLCRYIPSNGKFEGIP 181 (758)
T ss_dssp EEEECHHHHCCSC----S--------CEEEEEECTTCCEEEEET---------TEEEEEETTTTEEEEEC
T ss_pred EEEeccCCCCcCC----C--------eEEEEEEcCCCCEEEEeC---------CCHhhCccCCCceEEec
Confidence 8766311100000 0 00223332 678888321 34588999999887654
No 171
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=86.77 E-value=18 Score=32.78 Aligned_cols=70 Identities=6% Similarity=0.033 Sum_probs=39.0
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE----CCEEEEEeceecCCCCcccCCeEEEEeC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL----NDKLYVVGGVSRARGGLTPLQSAEVFDP 253 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 253 (475)
.+++.++.|+.++ .+.+||..+.+.+.+..+..-......+.+ ++++++.|+. -..+.+||.
T Consensus 19 ~~g~~las~s~D~-----~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~---------D~~v~iWd~ 84 (297)
T 2pm7_B 19 YYGKRMATCSSDK-----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY---------DGKVMIWKE 84 (297)
T ss_dssp TTSSEEEEEETTS-----CEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET---------TTEEEEEEB
T ss_pred CCCCEEEEEeCCC-----EEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC---------CCEEEEEEc
Confidence 3566777777543 567777765443333222211111122222 2567777764 257889999
Q ss_pred CCCCeEec
Q 011881 254 TTDAWSEV 261 (475)
Q Consensus 254 ~t~~W~~~ 261 (475)
.+..|..+
T Consensus 85 ~~~~~~~~ 92 (297)
T 2pm7_B 85 ENGRWSQI 92 (297)
T ss_dssp SSSCBCCC
T ss_pred CCCceEEE
Confidence 88877654
No 172
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=86.46 E-value=7.5 Score=36.00 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=36.7
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE---CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL---NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
+.+++.|+.++ .+.+||+.+.+-... +.........+.+ ++.+++.|+. ...+.+||..+.
T Consensus 85 ~~~l~~~~~dg-----~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~ 148 (366)
T 3k26_A 85 HPLLAVAGSRG-----IIRIINPITMQCIKH--YVGHGNAINELKFHPRDPNLLLSVSK---------DHALRLWNIQTD 148 (366)
T ss_dssp CEEEEEEETTC-----EEEEECTTTCCEEEE--EESCCSCEEEEEECSSCTTEEEEEET---------TSCEEEEETTTT
T ss_pred CCEEEEecCCC-----EEEEEEchhceEeee--ecCCCCcEEEEEECCCCCCEEEEEeC---------CCeEEEEEeecC
Confidence 56777776543 688899887653221 1111111122222 5677777764 257899999887
Q ss_pred CeE
Q 011881 257 AWS 259 (475)
Q Consensus 257 ~W~ 259 (475)
+-.
T Consensus 149 ~~~ 151 (366)
T 3k26_A 149 TLV 151 (366)
T ss_dssp EEE
T ss_pred eEE
Confidence 543
No 173
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=86.44 E-value=32 Score=35.31 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=43.9
Q ss_pred eCCE----EEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCCc--cceeeeEEECCEEEEEeceecCCCCcccCCeEE
Q 011881 178 VDGC----LYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSVG--RAYCKTGILNDKLYVVGGVSRARGGLTPLQSAE 249 (475)
Q Consensus 178 ~~~~----lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~--R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 249 (475)
.+++ ||+... ...++.+|..|.+ |+.-..-+.. ....+.++.+++||+-.+..+ ......+.
T Consensus 116 ~~g~~~~rV~v~t~------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e----~g~~g~v~ 185 (599)
T 1w6s_A 116 GDGKTPALILKTQL------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAE----LGVRGYLT 185 (599)
T ss_dssp CCSSSCCEEEEECT------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGG----GTCCCEEE
T ss_pred cCCcceeEEEEEcC------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccc----cCCCCeEE
Confidence 5666 877532 2478999998876 8753211111 112234567899887543110 01235899
Q ss_pred EEeCCCCC--eEecC
Q 011881 250 VFDPTTDA--WSEVP 262 (475)
Q Consensus 250 ~yd~~t~~--W~~~~ 262 (475)
.||.+|.+ |+.-.
T Consensus 186 A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 186 AYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEETTTCCEEEEEES
T ss_pred EEECCCCcEEEEEcC
Confidence 99999876 87543
No 174
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=86.28 E-value=12 Score=32.77 Aligned_cols=53 Identities=9% Similarity=0.146 Sum_probs=30.2
Q ss_pred CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCC-cCc--cccCCCCCCCeEEEEeC--CeEEEEee
Q 011881 347 DGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIG-KVP--IRDFADSESPYLLSAFH--GKLHVLTK 407 (475)
Q Consensus 347 ~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~-~~p--~~~~~~~r~~~~~~~~~--~~l~v~GG 407 (475)
++++|+|-| +..|.||..+++-..--+ .+. ...++ ...-++.... |++|+|=|
T Consensus 135 ~g~~YfFkG------~~ywr~d~~~~~v~~gyPr~i~~~w~g~p--~~idaAf~~~~~g~~YfFkg 192 (218)
T 1gen_A 135 NKKTYIFAG------DKFWRYNEVKKKMDPGFPKLIADAWNAIP--DNLDAVVDLQGGGHSYFFKG 192 (218)
T ss_dssp TTEEEEEET------TEEEEEETTTTEECSSCCEEHHHHSSSCC--SSCSEEEECTTTCEEEEEET
T ss_pred CCeEEEEEC------CEEEEEECccccccCCCCcchhhccCCCC--CCCCEEEEEcCCCcEEEEEC
Confidence 689999977 589999998764221100 000 01122 2223444444 89999866
No 175
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=86.16 E-value=7.1 Score=36.01 Aligned_cols=69 Identities=7% Similarity=0.021 Sum_probs=38.5
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE----CCEEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL----NDKLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
++.+++.|+.++ .+.+||+.+.+...+..+..-......+.+ ++.+++.|+. -..+.+||..
T Consensus 24 ~g~~lasgs~D~-----~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~---------D~~v~iWd~~ 89 (316)
T 3bg1_A 24 YGTRLATCSSDR-----SVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY---------DRKVIIWREE 89 (316)
T ss_dssp GGCEEEEEETTT-----EEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET---------TSCEEEECCS
T ss_pred CCCEEEEEeCCC-----eEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC---------CCEEEEEECC
Confidence 556667776543 677788776654333222111111122222 2567777764 2578899998
Q ss_pred CCCeEec
Q 011881 255 TDAWSEV 261 (475)
Q Consensus 255 t~~W~~~ 261 (475)
+..|..+
T Consensus 90 ~~~~~~~ 96 (316)
T 3bg1_A 90 NGTWEKS 96 (316)
T ss_dssp SSCCCEE
T ss_pred CCcceEE
Confidence 8877654
No 176
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=86.11 E-value=22 Score=33.23 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=36.9
Q ss_pred CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEE-ECCeEEEEcCCCCCCCCeEEEEeCC
Q 011881 292 MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVV-LDGELYAFDPSSSLNSAKIKVYDQK 370 (475)
Q Consensus 292 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~ 370 (475)
++.+++.|+.++ ....||+.+++....-... ......++. .++.+++.|+.+ ..+.+||..
T Consensus 209 ~g~~l~sgs~Dg-------~v~~wd~~~~~~~~~~~~h-------~~~v~~v~~~p~~~~l~s~s~D----~~v~lwd~~ 270 (354)
T 2pbi_B 209 TGNTFVSGGCDK-------KAMVWDMRSGQCVQAFETH-------ESDVNSVRYYPSGDAFASGSDD----ATCRLYDLR 270 (354)
T ss_dssp SCCEEEEEETTS-------CEEEEETTTCCEEEEECCC-------SSCEEEEEECTTSSEEEEEETT----SCEEEEETT
T ss_pred CCCEEEEEeCCC-------eEEEEECCCCcEEEEecCC-------CCCeEEEEEeCCCCEEEEEeCC----CeEEEEECC
Confidence 356777776554 2378999887754422101 011111222 256777777743 579999998
Q ss_pred CCcE
Q 011881 371 EDTW 374 (475)
Q Consensus 371 ~~~W 374 (475)
+..-
T Consensus 271 ~~~~ 274 (354)
T 2pbi_B 271 ADRE 274 (354)
T ss_dssp TTEE
T ss_pred CCcE
Confidence 7643
No 177
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=86.09 E-value=15 Score=41.15 Aligned_cols=147 Identities=12% Similarity=0.049 Sum_probs=74.2
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCe
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAW 258 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 258 (475)
++..++.|+.+ ..+.+||..+.+...+...... -..+....+..++.|+. ...+.+||..+++-
T Consensus 1014 dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~---------dg~v~vwd~~~~~~ 1077 (1249)
T 3sfz_A 1014 DGKTLISSSED-----SVIQVWNWQTGDYVFLQAHQET--VKDFRLLQDSRLLSWSF---------DGTVKVWNVITGRI 1077 (1249)
T ss_dssp SSSCEEEECSS-----SBEEEEETTTTEEECCBCCSSC--EEEEEECSSSEEEEEES---------SSEEEEEETTTTCC
T ss_pred CCCEEEEEcCC-----CEEEEEECCCCceEEEecCCCc--EEEEEEcCCCcEEEEEC---------CCcEEEEECCCCce
Confidence 55666666654 3688899998877654322211 11223333333455553 25789999987753
Q ss_pred EecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccC
Q 011881 259 SEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQA 338 (475)
Q Consensus 259 ~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~ 338 (475)
...-........ .....-++++++.|+.++. ..+||..+.+- +.. +. ....
T Consensus 1078 ~~~~~~~~~~v~---------------~~~~s~d~~~l~s~s~d~~-------v~iwd~~~~~~--~~~-l~----~h~~ 1128 (1249)
T 3sfz_A 1078 ERDFTCHQGTVL---------------SCAISSDATKFSSTSADKT-------AKIWSFDLLSP--LHE-LK----GHNG 1128 (1249)
T ss_dssp CEEEECCSSCCC---------------CEEECSSSSSCEEECCSSC-------CCEECSSSSSC--SBC-CC----CCSS
T ss_pred eEEEcccCCcEE---------------EEEECCCCCEEEEEcCCCc-------EEEEECCCcce--eee-ec----cCCC
Confidence 221000000000 2223345666666665432 26788766542 111 11 0111
Q ss_pred C-CeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcE
Q 011881 339 G-TKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTW 374 (475)
Q Consensus 339 ~-~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W 374 (475)
. .+.+...++++++.|+.+ +.|.+||..+.+-
T Consensus 1129 ~v~~~~~s~dg~~lat~~~d----g~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A 1129 CVRCSAFSLDGILLATGDDN----GEIRIWNVSDGQL 1161 (1249)
T ss_dssp CEEEEEECSSSSEEEEEETT----SCCCEEESSSSCC
T ss_pred cEEEEEECCCCCEEEEEeCC----CEEEEEECCCCce
Confidence 1 111223477788887743 4588889887643
No 178
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=85.95 E-value=25 Score=33.60 Aligned_cols=167 Identities=18% Similarity=0.139 Sum_probs=86.2
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCC---CCc--c-------ceeeeEEE----CCEEEEEeceecCCCCc
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSM---SVG--R-------AYCKTGIL----NDKLYVVGGVSRARGGL 242 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~--R-------~~~~~~~~----~~~iyv~GG~~~~~~~~ 242 (475)
.+.||+.+.. + ..-.-+++.+-...+|+.+... +.. + .-.++++. .+.||+.+.
T Consensus 67 ~~~l~~g~~~-g-~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-------- 136 (394)
T 3b7f_A 67 PERMLMAART-G-HLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-------- 136 (394)
T ss_dssp TTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE--------
T ss_pred CCeEEEEecC-C-CCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec--------
Confidence 5678876532 1 0112578887788899988532 211 1 11123332 467777542
Q ss_pred ccCCeEEEEeCCCCCeEecCCC---Ccccc-------CCCCccccccccccceeeEEEe---CCEEEEeccCCCCCceec
Q 011881 243 TPLQSAEVFDPTTDAWSEVPSM---PFSRA-------QGLPNAFFADMLKPIATGMTSY---MGRLCVPQSLYSWPFFVD 309 (475)
Q Consensus 243 ~~~~~~~~yd~~t~~W~~~~~~---p~~r~-------~~~~~~~~~~~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~ 309 (475)
...+++.+-...+|+.+..+ |..+. +.... ...++++.. .+.||+....
T Consensus 137 --~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~--------~~i~~i~~d~~~~~~l~vg~~~-------- 198 (394)
T 3b7f_A 137 --PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDG--------PKMHSILVDPRDPKHLYIGMSS-------- 198 (394)
T ss_dssp --TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCC--------CEEEEEEECTTCTTCEEEEEET--------
T ss_pred --CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCC--------CceeEEEECCCCCCEEEEEECC--------
Confidence 14678888788899987432 21100 00000 000333332 3578874321
Q ss_pred cceEEEeCCCCceEEcCCCCCC-CCCCcc--CC--CeEEEEE-C--CeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCC
Q 011881 310 VGGEIYDPDTNSWVEMPIGMGE-GWPARQ--AG--TKLSVVL-D--GELYAFDPSSSLNSAKIKVYDQKEDTWKVVIG 379 (475)
Q Consensus 310 ~~~~~yd~~~~~W~~~~~~~~~-~~p~~~--~~--~~~~~~~-~--~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~ 379 (475)
-+.++.+-...+|+.+...... ..|... .+ ...+++. + +.||+... ..|++++....+|+.+..
T Consensus 199 ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~------~gl~~s~D~G~tW~~~~~ 270 (394)
T 3b7f_A 199 GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH------CGIYRMDRREGVWKRIGD 270 (394)
T ss_dssp BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET------TEEEEEETTTTEEECGGG
T ss_pred CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC------CeEEEeCCCCCcceECCC
Confidence 1236677777899988642211 112111 11 1112332 1 66777532 468889888999999853
No 179
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=85.35 E-value=22 Score=32.60 Aligned_cols=67 Identities=9% Similarity=0.006 Sum_probs=33.9
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++..++.|+.+ ..+.+||..+.+-...-..+.+ -..+... +++.++.++.+.. .....+.+||..+.
T Consensus 85 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~~~----~~~g~i~~~d~~~~ 152 (369)
T 3zwl_B 85 FTKYCVTGSAD-----YSIKLWDVSNGQCVATWKSPVP--VKRVEFSPCGNYFLAILDNVM----KNPGSINIYEIERD 152 (369)
T ss_dssp TSSEEEEEETT-----TEEEEEETTTCCEEEEEECSSC--EEEEEECTTSSEEEEEECCBT----TBCCEEEEEEEEEC
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEeecCCC--eEEEEEccCCCEEEEecCCcc----CCCCEEEEEEecCC
Confidence 45556666543 3688899887765433222211 1122222 4555555543210 11256778877654
No 180
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=85.27 E-value=2.7 Score=37.37 Aligned_cols=55 Identities=13% Similarity=0.010 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCC------CCCCeEEEE--eCCeEEEEeec
Q 011881 347 DGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFAD------SESPYLLSA--FHGKLHVLTKD 408 (475)
Q Consensus 347 ~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~------~r~~~~~~~--~~~~l~v~GG~ 408 (475)
++++|+|-| +..|+||..+++-..-+..+.. .++. +...-++.. .++++|+|-|.
T Consensus 127 ~gk~yfFkG------~~yw~~d~~~~~~~~gPk~I~~-~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~ 189 (225)
T 3oyo_A 127 GKEVYLFKG------NKYVRIAYDSKQLVGNIRNIGD-GFPVLNGTEFESGIDACFASHKEPEAYLFKGQ 189 (225)
T ss_dssp TTEEEEEET------TEEEEEETTTTEEEEEEEEHHH-HCGGGTTSTTTTCCSEEEECSSTTEEEEEETT
T ss_pred CCcEEEEeC------CeEEEEECCCCeecCCCcchhh-cCCCcccccCCCCcCEEEEeCCCCEEEEEECC
Confidence 689999977 5899999877665431000000 1111 122224444 47999999773
No 181
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=85.26 E-value=16 Score=34.20 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=32.2
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCE-EEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDK-LYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
+.+++.|+.+ ..+.+||..+.+-... +........+..+ ++. +++.|+. ...+.+||..+.
T Consensus 156 ~~~~~~~~~~-----~~v~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~ll~~~~~---------dg~i~i~d~~~~ 219 (408)
T 4a11_B 156 HCLVAVGTRG-----PKVQLCDLKSGSCSHI--LQGHRQEILAVSWSPRYDYILATASA---------DSRVKLWDVRRA 219 (408)
T ss_dssp CCEEEEEESS-----SSEEEEESSSSCCCEE--ECCCCSCEEEEEECSSCTTEEEEEET---------TSCEEEEETTCS
T ss_pred CcEEEEEcCC-----CeEEEEeCCCcceeee--ecCCCCcEEEEEECCCCCcEEEEEcC---------CCcEEEEECCCC
Confidence 3466666543 3678888876542211 1111111222222 333 6777764 246888888765
Q ss_pred C
Q 011881 257 A 257 (475)
Q Consensus 257 ~ 257 (475)
.
T Consensus 220 ~ 220 (408)
T 4a11_B 220 S 220 (408)
T ss_dssp S
T ss_pred C
Confidence 3
No 182
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=85.03 E-value=21 Score=31.97 Aligned_cols=63 Identities=13% Similarity=0.014 Sum_probs=32.3
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEE-ECCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGI-LNDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
.++..++.|+.+ ..+.+||..+.+-...-....... .+++. -++++++.|+.+ ..+.+||...
T Consensus 27 ~~~~~l~s~~~d-----g~v~vw~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d---------g~i~~~~~~~ 90 (313)
T 3odt_A 27 VDDSKVASVSRD-----GTVRLWSKDDQWLGTVVYTGQGFL-NSVCYDSEKELLLFGGKD---------TMINGVPLFA 90 (313)
T ss_dssp EETTEEEEEETT-----SEEEEEEESSSEEEEEEEECSSCE-EEEEEETTTTEEEEEETT---------SCEEEEETTC
T ss_pred cCCCEEEEEEcC-----CcEEEEECCCCEEEEEeecCCccE-EEEEECCCCCEEEEecCC---------CeEEEEEeee
Confidence 445556666644 367888887665433221111111 12222 256677777642 4567777654
No 183
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=85.01 E-value=9.8 Score=39.25 Aligned_cols=155 Identities=13% Similarity=0.146 Sum_probs=75.5
Q ss_pred eEEEeCCEEEEEcCCCCCCCcceEEEEeCCCC-cEE--eC----CCCCCccceeeeEE-ECCEEEEEeceecCCCCcccC
Q 011881 174 AIGAVDGCLYVLGGFSRTSAMRCVRRYDPIAN-TWN--EA----TSMSVGRAYCKTGI-LNDKLYVVGGVSRARGGLTPL 245 (475)
Q Consensus 174 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~-~W~--~~----~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 245 (475)
++...++++|+|=| +.+|+++.... ... .+ +.+|. ....+... .++++|+|-|
T Consensus 448 Ait~~rg~~yfFKg-------~~yWr~~~~~~~~~~P~~Is~~wp~LP~-~IDAA~~~~~~~k~yFFkG----------- 508 (631)
T 1ck7_A 448 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG----------- 508 (631)
T ss_dssp EEEECSSSEEEECS-------SEEEEESCTTSCCEEEEEGGGTCTTSCS-SCSBCCEETTTTEEEEEET-----------
T ss_pred eeEecCCcEEEEcC-------CEEEEEcCCCCCCCCceeccccCCCCCc-cceEEEEECCCCEEEEEec-----------
Confidence 34456889999976 36777766542 111 11 22332 12222222 2689999977
Q ss_pred CeEEEEeCCCCCeEecCCCCccccC-CCCccccccccccceeeEEE--eCCEEEEeccCCCCCceeccceEEEeCCCCce
Q 011881 246 QSAEVFDPTTDAWSEVPSMPFSRAQ-GLPNAFFADMLKPIATGMTS--YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSW 322 (475)
Q Consensus 246 ~~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 322 (475)
+..++||.. +..+.-|.+... ..+.. ...| -++.. .++++|+|-|. .-++||..+++=
T Consensus 509 ~~yWry~~~----~l~~GYPk~Is~~G~P~~-----~~~I-DAAf~~~~~gktYFFkG~---------~ywryd~~~~~v 569 (631)
T 1ck7_A 509 NEYWIYSAS----TLERGYPKPLTSLGLPPD-----VQRV-DAAFNWSKNKKTYIFAGD---------KFWRYNEVKKKM 569 (631)
T ss_dssp TEEEEEETT----EECTTCCEEGGGGTCCTT-----CCCC-CBCCCCTTTCEEEEEETT---------EEEEEETTTTEE
T ss_pred CEEEEECCC----ccccCCCccchhcCCCCC-----CCcc-eeEEEecCCCeEEEEECC---------EEEEEcCCcccc
Confidence 468888852 222222222111 11100 0000 22232 47899998662 238898766531
Q ss_pred EEc-CCCCCCCCCCccCCCeEEEEEC--CeEEEEcCCCCCCCCeEEEEeCCCC
Q 011881 323 VEM-PIGMGEGWPARQAGTKLSVVLD--GELYAFDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 323 ~~~-~~~~~~~~p~~~~~~~~~~~~~--~~lyv~GG~~~~~~~~v~~yd~~~~ 372 (475)
..- +..+...|+.-.....++...+ |++|++-| +..|.||..+.
T Consensus 570 d~gYPk~i~~~w~G~p~~iDAAf~~~~~g~~YFFkG------~~Ywr~d~~~~ 616 (631)
T 1ck7_A 570 DPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKG------AYYLKLENQSL 616 (631)
T ss_dssp CTTCCEETTTSCSSCCTTCCEEECCTTSCBCEEEET------TEEECCBTTBT
T ss_pred cCCCCcchHhhcCCCCCCCcEeEEEcCCCeEEEEEC------CEEEEEeCccc
Confidence 110 0011112222111222234433 89999977 57888887654
No 184
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=84.96 E-value=11 Score=36.39 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=70.9
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCC
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGL 272 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 272 (475)
+.|+++|..+++...+-.+........++.+ ++++++.|+. ...+.+||..+++-... +......
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~---------Dg~v~iWd~~~~~~~~~--~~~h~~~-- 191 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS---------SAEVQLWDVQQQKRLRN--MTSHSAR-- 191 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET---------TSCEEEEETTTTEEEEE--ECCCSSC--
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEEC---------CCeEEEEEcCCCcEEEE--EeCCCCc--
Confidence 4788899998887665444333222333333 5677777774 25789999988753222 1111111
Q ss_pred CccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEE--cCCCCCCCCCCccCCCeEEEEECCeE
Q 011881 273 PNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE--MPIGMGEGWPARQAGTKLSVVLDGEL 350 (475)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~--~~~~~~~~~p~~~~~~~~~~~~~~~l 350 (475)
......++.+.+.|+.++ ....+|........ +... ...-.......++..
T Consensus 192 -------------v~~~s~~~~~l~sgs~d~-------~i~~~d~~~~~~~~~~~~~h-------~~~~~~~~~~~~g~~ 244 (420)
T 4gga_A 192 -------------VGSLSWNSYILSSGSRSG-------HIHHHDVRVAEHHVATLSGH-------SQEVCGLRWAPDGRH 244 (420)
T ss_dssp -------------EEEEEEETTEEEEEETTS-------EEEEEETTSSSCEEEEEECC-------SSCEEEEEECTTSSE
T ss_pred -------------eEEEeeCCCEEEEEeCCC-------ceeEeeecccceeeEEeccc-------ccceeeeeecCCCCe
Confidence 333455677777776543 23566766544322 1110 000111122235666
Q ss_pred EEEcCCCCCCCCeEEEEeCCCC
Q 011881 351 YAFDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 351 yv~GG~~~~~~~~v~~yd~~~~ 372 (475)
++.|+.+ +.+.++|..+.
T Consensus 245 l~s~~~D----~~v~i~~~~~~ 262 (420)
T 4gga_A 245 LASGGND----NLVNVWPSAPG 262 (420)
T ss_dssp EEEEETT----SCEEEEESSCC
T ss_pred eeeeecc----ccceEEeeccc
Confidence 6666643 46777877654
No 185
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=84.95 E-value=9.9 Score=40.09 Aligned_cols=150 Identities=13% Similarity=0.033 Sum_probs=79.2
Q ss_pred CcceEEEEeCCCC--c-EEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCC--CCeEecCCCCcc
Q 011881 193 AMRCVRRYDPIAN--T-WNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTT--DAWSEVPSMPFS 267 (475)
Q Consensus 193 ~~~~~~~yd~~t~--~-W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t--~~W~~~~~~p~~ 267 (475)
..++++++|..+. + |+.+.+-....... ....++.||+..... .....++.+|..+ ..|+.+-+-...
T Consensus 292 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~------~~~~~l~~~d~~~~~~~~~~l~~~~~~ 364 (741)
T 1yr2_A 292 PVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDG------APLKKIVRVDLSGSTPRFDTVVPESKD 364 (741)
T ss_dssp SCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTT------CTTCEEEEEECSSSSCEEEEEECCCSS
T ss_pred CcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCC------CCCCEEEEEeCCCCccccEEEecCCCC
Confidence 3568999999877 6 88775433222222 224577788775321 1246799999888 578876432111
Q ss_pred ccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEE--
Q 011881 268 RAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVV-- 345 (475)
Q Consensus 268 r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~-- 345 (475)
.. ..+...++.+++....++. ...+.+|+....-..+.. |. .+......
T Consensus 365 ~l----------------~~~~~~~~~lv~~~~~dg~-----~~l~~~~~~g~~~~~l~~------~~--~~~v~~~~~s 415 (741)
T 1yr2_A 365 NL----------------ESVGIAGNRLFASYIHDAK-----SQVLAFDLDGKPAGAVSL------PG--IGSASGLSGR 415 (741)
T ss_dssp EE----------------EEEEEEBTEEEEEEEETTE-----EEEEEEETTSCEEEECBC------SS--SCEEEEEECC
T ss_pred eE----------------EEEEEECCEEEEEEEECCE-----EEEEEEeCCCCceeeccC------CC--CeEEEEeecC
Confidence 10 2334447787775543322 112667765444444432 11 11110111
Q ss_pred ECCe-EEEEcCCCCCCCCeEEEEeCCCCcEEEcCC
Q 011881 346 LDGE-LYAFDPSSSLNSAKIKVYDQKEDTWKVVIG 379 (475)
Q Consensus 346 ~~~~-lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~ 379 (475)
-++. |++.. .+......++.||..+++.+.+..
T Consensus 416 ~d~~~l~~~~-ss~~~P~~i~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 416 PGDRHAYLSF-SSFTQPATVLALDPATAKTTPWEP 449 (741)
T ss_dssp BTCSCEEEEE-EETTEEEEEEEEETTTTEEEECSC
T ss_pred CCCCEEEEEE-cCCCCCCEEEEEECCCCcEEEEec
Confidence 2333 44332 111223589999999988777643
No 186
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=84.95 E-value=27 Score=33.11 Aligned_cols=156 Identities=10% Similarity=-0.010 Sum_probs=74.3
Q ss_pred CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCcc-ccCCCCccccccccccceeeEEEe-CC-EEEEeccCC
Q 011881 226 NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFS-RAQGLPNAFFADMLKPIATGMTSY-MG-RLCVPQSLY 302 (475)
Q Consensus 226 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-r~~~~~~~~~~~~~~~~~~~~~~~-~~-~iyv~GG~~ 302 (475)
++.+++.|+. ...+.+||..++.......-+.. ..++.. .+ .+++.. ++ .+++.|+.+
T Consensus 93 ~~~~l~s~s~---------dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~---------~v-~~~~~~p~~~~~l~s~~~d 153 (402)
T 2aq5_A 93 NDNVIASGSE---------DCTVMVWEIPDGGLVLPLREPVITLEGHTK---------RV-GIVAWHPTAQNVLLSAGCD 153 (402)
T ss_dssp CTTEEEEEET---------TSEEEEEECCTTCCSSCBCSCSEEEECCSS---------CE-EEEEECSSBTTEEEEEETT
T ss_pred CCCEEEEEeC---------CCeEEEEEccCCCCccccCCceEEecCCCC---------eE-EEEEECcCCCCEEEEEcCC
Confidence 5677777764 25789999988754211100000 000000 00 222222 33 466666654
Q ss_pred CCCceeccceEEEeCCCCceEEcC--CCCCCCCCCccCCCeEEEE-ECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCC
Q 011881 303 SWPFFVDVGGEIYDPDTNSWVEMP--IGMGEGWPARQAGTKLSVV-LDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIG 379 (475)
Q Consensus 303 ~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~~~p~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~ 379 (475)
+ ...+||..+++....- . .. . .....++. .++.+++.|+.+ +.+.+||+.+.+-.....
T Consensus 154 g-------~i~iwd~~~~~~~~~~~~~-~~-----~-~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~ 215 (402)
T 2aq5_A 154 N-------VILVWDVGTGAAVLTLGPD-VH-----P-DTIYSVDWSRDGALICTSCRD----KRVRVIEPRKGTVVAEKD 215 (402)
T ss_dssp S-------CEEEEETTTTEEEEEECTT-TC-----C-SCEEEEEECTTSSCEEEEETT----SEEEEEETTTTEEEEEEE
T ss_pred C-------EEEEEECCCCCccEEEecC-CC-----C-CceEEEEECCCCCEEEEEecC----CcEEEEeCCCCceeeeec
Confidence 3 2378999887654321 1 00 0 11111222 266777777633 589999998875433210
Q ss_pred cCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCCC
Q 011881 380 KVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPRD 422 (475)
Q Consensus 380 ~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~~ 422 (475)
.. ....+.......-++++++.|.....+-.+..+|+..
T Consensus 216 --~~--~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~ 254 (402)
T 2aq5_A 216 --RP--HEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH 254 (402)
T ss_dssp --CS--SCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTB
T ss_pred --cC--CCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcc
Confidence 00 0111111222234677766664323334466666654
No 187
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=84.87 E-value=21 Score=31.77 Aligned_cols=189 Identities=10% Similarity=0.046 Sum_probs=98.1
Q ss_pred eeEEEe--CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeE
Q 011881 173 CAIGAV--DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSA 248 (475)
Q Consensus 173 ~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 248 (475)
+.++.. ++.||+.-.. ...+.+||+.+..-+.+.+... ..-+.+++. +++||+.-.. .+.+
T Consensus 39 ~gi~~d~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~d~~~~~lyv~d~~---------~~~I 103 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDIS-----EPSIGRASLHGGEPTTIIRQDL-GSPEGIALDHLGRTIFWTDSQ---------LDRI 103 (267)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEEESSSCCCEEEECTTC-CCEEEEEEETTTTEEEEEETT---------TTEE
T ss_pred EEEEEecCCCEEEEEECC-----CCEEEEEecCCCCcEEEEECCC-CCccEEEEEecCCeEEEEECC---------CCEE
Confidence 344443 6789987532 3579999998765333321111 112334443 5799998542 3678
Q ss_pred EEEeCCCCCeEecCC--CCccccCCCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCceEE
Q 011881 249 EVFDPTTDAWSEVPS--MPFSRAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE 324 (475)
Q Consensus 249 ~~yd~~t~~W~~~~~--~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~ 324 (475)
.++|+....-+.+.. +..| .++++. +++||+....... ...+++++....-+.
T Consensus 104 ~~~~~~g~~~~~~~~~~~~~P------------------~~i~vd~~~g~lyv~~~~~~~-----~~I~~~~~dg~~~~~ 160 (267)
T 1npe_A 104 EVAKMDGTQRRVLFDTGLVNP------------------RGIVTDPVRGNLYWTDWNRDN-----PKIETSHMDGTNRRI 160 (267)
T ss_dssp EEEETTSCSCEEEECSSCSSE------------------EEEEEETTTTEEEEEECCSSS-----CEEEEEETTSCCCEE
T ss_pred EEEEcCCCCEEEEEECCCCCc------------------cEEEEeeCCCEEEEEECCCCC-----cEEEEEecCCCCcEE
Confidence 999987544333211 1111 333433 6889986532100 123677776543333
Q ss_pred cCCCCCCCCCCccCCCeEEEEE--CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeE
Q 011881 325 MPIGMGEGWPARQAGTKLSVVL--DGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKL 402 (475)
Q Consensus 325 ~~~~~~~~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l 402 (475)
+.. .....| . + +++. +++||+.... .+.|.+||+....-..+.. ......+++..++.|
T Consensus 161 ~~~-~~~~~P--~---g-ia~d~~~~~lyv~d~~----~~~I~~~~~~g~~~~~~~~--------~~~~P~gi~~d~~~l 221 (267)
T 1npe_A 161 LAQ-DNLGLP--N---G-LTFDAFSSQLCWVDAG----THRAECLNPAQPGRRKVLE--------GLQYPFAVTSYGKNL 221 (267)
T ss_dssp EEC-TTCSCE--E---E-EEEETTTTEEEEEETT----TTEEEEEETTEEEEEEEEE--------CCCSEEEEEEETTEE
T ss_pred EEE-CCCCCC--c---E-EEEcCCCCEEEEEECC----CCEEEEEecCCCceEEEec--------CCCCceEEEEeCCEE
Confidence 321 110011 1 1 3333 5789998642 3689999998643222211 112234666678889
Q ss_pred EEEeecCCCCeeEEEecCC
Q 011881 403 HVLTKDASRNISILRADPR 421 (475)
Q Consensus 403 ~v~GG~~~~~~~v~~~d~~ 421 (475)
|+.-... +. +..+|+.
T Consensus 222 yva~~~~-~~--v~~~d~~ 237 (267)
T 1npe_A 222 YYTDWKT-NS--VIAMDLA 237 (267)
T ss_dssp EEEETTT-TE--EEEEETT
T ss_pred EEEECCC-Ce--EEEEeCC
Confidence 9865332 22 5555554
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=84.29 E-value=18 Score=32.70 Aligned_cols=114 Identities=11% Similarity=0.022 Sum_probs=62.3
Q ss_pred CEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEE-eCCEEEEeccCCCCC
Q 011881 227 DKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWP 305 (475)
Q Consensus 227 ~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~ 305 (475)
+.||+++.. ...+.+||+.++ .+.+.. +.... .+++. -+|++|+.....
T Consensus 40 ~~l~~~~~~---------~~~i~~~~~~~~-~~~~~~-~~~~~----------------~~l~~~~dg~l~v~~~~~--- 89 (296)
T 3e5z_A 40 SAVIFSDVR---------QNRTWAWSDDGQ-LSPEMH-PSHHQ----------------NGHCLNKQGHLIACSHGL--- 89 (296)
T ss_dssp TEEEEEEGG---------GTEEEEEETTSC-EEEEES-SCSSE----------------EEEEECTTCCEEEEETTT---
T ss_pred CEEEEEeCC---------CCEEEEEECCCC-eEEEEC-CCCCc----------------ceeeECCCCcEEEEecCC---
Confidence 358888753 257899999987 555432 11111 33333 467888754321
Q ss_pred ceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEE----cCC---------CCCCCCeEEEEeCCCC
Q 011881 306 FFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAF----DPS---------SSLNSAKIKVYDQKED 372 (475)
Q Consensus 306 ~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~----GG~---------~~~~~~~v~~yd~~~~ 372 (475)
.+..+||+++++.+.+...... .+.... ...++.-+|+||+. |.. .......|+.||+. +
T Consensus 90 ----~~i~~~d~~~g~~~~~~~~~~~-~~~~~~-~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (296)
T 3e5z_A 90 ----RRLERQREPGGEWESIADSFEG-KKLNSP-NDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G 162 (296)
T ss_dssp ----TEEEEECSTTCCEEEEECEETT-EECCCC-CCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S
T ss_pred ----CeEEEEcCCCCcEEEEeeccCC-CCCCCC-CCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C
Confidence 2358999988888766431110 011111 11133447889996 321 11123589999987 5
Q ss_pred cEEEc
Q 011881 373 TWKVV 377 (475)
Q Consensus 373 ~W~~v 377 (475)
+...+
T Consensus 163 ~~~~~ 167 (296)
T 3e5z_A 163 TLSAP 167 (296)
T ss_dssp CEEEE
T ss_pred CEEEe
Confidence 55544
No 189
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=84.03 E-value=26 Score=32.33 Aligned_cols=65 Identities=6% Similarity=-0.002 Sum_probs=38.6
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
++.+++.|+.++ .+.+||..+.+-...........-.+++.. ++.+++.|+. ...+.+||..+.+
T Consensus 138 ~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~---------dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 138 NTEYFIWADNRG-----TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP---------DGILDVYNLSSPD 203 (343)
T ss_dssp -CCEEEEEETTC-----CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT---------TSCEEEEESSCTT
T ss_pred CCCEEEEEeCCC-----cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC---------CCEEEEEECCCCC
Confidence 456667776543 678899888776443222221111222222 6778888774 2578999998875
No 190
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=83.87 E-value=9.7 Score=36.37 Aligned_cols=149 Identities=16% Similarity=0.135 Sum_probs=72.9
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
+++.++.|+.++ .+.+||..+.+-...-.-.. ..-.+++.. ++..++.|+. ...+.+||..+.+
T Consensus 134 dg~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~---------d~~v~iwd~~~~~ 198 (393)
T 1erj_A 134 DGKFLATGAEDR-----LIRIWDIENRKIVMILQGHE-QDIYSLDYFPSGDKLVSGSG---------DRTVRIWDLRTGQ 198 (393)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEET---------TSEEEEEETTTTE
T ss_pred CCCEEEEEcCCC-----eEEEEECCCCcEEEEEccCC-CCEEEEEEcCCCCEEEEecC---------CCcEEEEECCCCe
Confidence 566777776543 67888988776433211111 111122222 4555566653 2578899998876
Q ss_pred eEecCCCCccccCCCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCceEE-cCCCCCCCCC
Q 011881 258 WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE-MPIGMGEGWP 334 (475)
Q Consensus 258 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~p 334 (475)
....-...... ..++.. ++++++.|+.++. ..+||..+++-.. +...... .
T Consensus 199 ~~~~~~~~~~v-----------------~~~~~~~~~~~~l~~~s~d~~-------v~iwd~~~~~~~~~~~~~~~~--~ 252 (393)
T 1erj_A 199 CSLTLSIEDGV-----------------TTVAVSPGDGKYIAAGSLDRA-------VRVWDSETGFLVERLDSENES--G 252 (393)
T ss_dssp EEEEEECSSCE-----------------EEEEECSTTCCEEEEEETTSC-------EEEEETTTCCEEEEEC--------
T ss_pred eEEEEEcCCCc-----------------EEEEEECCCCCEEEEEcCCCc-------EEEEECCCCcEEEeecccccC--C
Confidence 44321111100 222222 6677777775542 3788988776432 2110000 0
Q ss_pred CccCCC-eEEE-EECCeEEEEcCCCCCCCCeEEEEeCCCC
Q 011881 335 ARQAGT-KLSV-VLDGELYAFDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 335 ~~~~~~-~~~~-~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 372 (475)
...... ..++ .-++++++.|+.+ ..|.+||..+.
T Consensus 253 ~~h~~~v~~v~~~~~g~~l~s~s~d----~~v~~wd~~~~ 288 (393)
T 1erj_A 253 TGHKDSVYSVVFTRDGQSVVSGSLD----RSVKLWNLQNA 288 (393)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETT----SEEEEEEC---
T ss_pred CCCCCCEEEEEECCCCCEEEEEeCC----CEEEEEECCCC
Confidence 011111 1122 2366777777643 57888988654
No 191
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=83.84 E-value=24 Score=33.81 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=37.4
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
++.+++.|+.++ .+.+||..+.+-...-.-... ...+...++.+.+.|+. ...+..+|..+..
T Consensus 158 dg~~lasgs~Dg-----~v~iWd~~~~~~~~~~~~h~~--~v~~~s~~~~~l~sgs~---------d~~i~~~d~~~~~ 220 (420)
T 4gga_A 158 EGNYLAVGTSSA-----EVQLWDVQQQKRLRNMTSHSA--RVGSLSWNSYILSSGSR---------SGHIHHHDVRVAE 220 (420)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTTEEEEEECCCSS--CEEEEEEETTEEEEEET---------TSEEEEEETTSSS
T ss_pred CCCEEEEEECCC-----eEEEEEcCCCcEEEEEeCCCC--ceEEEeeCCCEEEEEeC---------CCceeEeeecccc
Confidence 566777777543 678899887764332222222 22344556777777764 2567778776644
No 192
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=83.65 E-value=28 Score=32.31 Aligned_cols=147 Identities=11% Similarity=0.125 Sum_probs=71.4
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.+++.|+.++ .+.+||..+..++.+..+.........+.+ ++++++.|+. -..+.+||..+.
T Consensus 72 ~g~~l~s~s~D~-----~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~---------D~~v~iwd~~~~ 137 (345)
T 3fm0_A 72 CGNYLASASFDA-----TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR---------DKSVWVWEVDEE 137 (345)
T ss_dssp TSSEEEEEETTS-----CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET---------TSCEEEEEECTT
T ss_pred CCCEEEEEECCC-----cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC---------CCeEEEEECCCC
Confidence 556666776543 466677777666544333221122222333 5677777764 246888887764
Q ss_pred C-eEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCC
Q 011881 257 A-WSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWP 334 (475)
Q Consensus 257 ~-W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p 334 (475)
. +..+..+...... + .+++ .-++++++.|+.++ ....||..++.|..+.. +..
T Consensus 138 ~~~~~~~~~~~h~~~-------------v-~~~~~~p~~~~l~s~s~d~-------~i~~w~~~~~~~~~~~~-~~~--- 192 (345)
T 3fm0_A 138 DEYECVSVLNSHTQD-------------V-KHVVWHPSQELLASASYDD-------TVKLYREEEDDWVCCAT-LEG--- 192 (345)
T ss_dssp SCEEEEEEECCCCSC-------------E-EEEEECSSSSCEEEEETTS-------CEEEEEEETTEEEEEEE-ECC---
T ss_pred CCeEEEEEecCcCCC-------------e-EEEEECCCCCEEEEEeCCC-------cEEEEEecCCCEEEEEE-ecC---
Confidence 3 3322111111111 0 1222 23566666666553 23678888888864332 110
Q ss_pred CccCCCeEE-EEECCeEEEEcCCCCCCCCeEEEEeC
Q 011881 335 ARQAGTKLS-VVLDGELYAFDPSSSLNSAKIKVYDQ 369 (475)
Q Consensus 335 ~~~~~~~~~-~~~~~~lyv~GG~~~~~~~~v~~yd~ 369 (475)
.......+ ...++++++.|+.+ ..|.+||.
T Consensus 193 -h~~~v~~l~~sp~g~~l~s~s~D----~~v~iW~~ 223 (345)
T 3fm0_A 193 -HESTVWSLAFDPSGQRLASCSDD----RTVRIWRQ 223 (345)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETT----SCEEEEEE
T ss_pred -CCCceEEEEECCCCCEEEEEeCC----CeEEEecc
Confidence 01111112 22356777777643 45666664
No 193
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=83.61 E-value=28 Score=32.30 Aligned_cols=149 Identities=16% Similarity=0.213 Sum_probs=74.6
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEE-eCCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVF-DPTT 255 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~y-d~~t 255 (475)
-++.+|+.|.. ..+++-+-.-.+|+.+..... ..-+.++.. ++.+|++|-. ..+++- |..-
T Consensus 131 ~~~~~~~~~~~------g~v~~S~DgG~tW~~~~~~~~-~~~~~~~~~~~~~~~~~g~~----------G~~~~S~d~gG 193 (327)
T 2xbg_A 131 GNGSAEMITNV------GAIYRTKDSGKNWQALVQEAI-GVMRNLNRSPSGEYVAVSSR----------GSFYSTWEPGQ 193 (327)
T ss_dssp ETTEEEEEETT------CCEEEESSTTSSEEEEECSCC-CCEEEEEECTTSCEEEEETT----------SSEEEEECTTC
T ss_pred CCCCEEEEeCC------ccEEEEcCCCCCCEEeecCCC-cceEEEEEcCCCcEEEEECC----------CcEEEEeCCCC
Confidence 46788887641 135554444568998854322 223344433 5667766531 123333 3335
Q ss_pred CCeEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccce-EEEeCC-CCceEEcCCC-CCC
Q 011881 256 DAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGG-EIYDPD-TNSWVEMPIG-MGE 331 (475)
Q Consensus 256 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~-~~yd~~-~~~W~~~~~~-~~~ 331 (475)
.+|+.+... .+..- +.++ .-++.+|+.+. .|. ...+.. ..+|+.+..+ +
T Consensus 194 ~tW~~~~~~-~~~~~---------------~~~~~~~~g~~~~~~~---------~G~~~~s~~D~G~tW~~~~~~~~-- 246 (327)
T 2xbg_A 194 TAWEPHNRT-TSRRL---------------HNMGFTPDGRLWMIVN---------GGKIAFSDPDNSENWGELLSPLR-- 246 (327)
T ss_dssp SSCEEEECC-SSSCE---------------EEEEECTTSCEEEEET---------TTEEEEEETTEEEEECCCBCTTS--
T ss_pred CceeECCCC-CCCcc---------------ceeEECCCCCEEEEeC---------CceEEEecCCCCCeeEeccCCcc--
Confidence 789987432 22111 3333 24677887653 111 222222 4689887642 1
Q ss_pred CCCCccCCCeEEEEE-CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 332 GWPARQAGTKLSVVL-DGELYAFDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 332 ~~p~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
+.. .+...++.. ++.+|+.|+. ..+++-.-.-.+|+.+.
T Consensus 247 --~~~-~~~~~v~~~~~~~~~~~g~~-----g~i~~S~DgG~tW~~~~ 286 (327)
T 2xbg_A 247 --RNS-VGFLDLAYRTPNEVWLAGGA-----GALLCSQDGGQTWQQDV 286 (327)
T ss_dssp --SCC-SCEEEEEESSSSCEEEEEST-----TCEEEESSTTSSCEECG
T ss_pred --cCC-cceEEEEecCCCEEEEEeCC-----CeEEEeCCCCcccEEcC
Confidence 111 111112222 6789998763 24544333457899875
No 194
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=83.52 E-value=22 Score=33.34 Aligned_cols=158 Identities=11% Similarity=0.000 Sum_probs=75.1
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCC
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGL 272 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 272 (475)
..++.+|..+.+++.+.. ..+........+ +++.+++...... .....++++|+.+++.+.+..++. .
T Consensus 216 ~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~----~~~~~l~~~d~~~g~~~~l~~~~~---~-- 285 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKG----QTDRVIYKANPETLENEEVMVMPP---C-- 285 (396)
T ss_dssp CCCEEEETTSCCCEESSC-CCTTEEEEEEEECTTSSCEEEEEEETT----TCCEEEEEECTTTCCEEEEEECCS---E--
T ss_pred ceEEEEECCCCceeEeec-cCCCccccceEECCCCCEEEEEecCCC----CccceEEEEECCCCCeEEeeeCCC---C--
Confidence 579999998888877755 221112222222 5553333333211 112459999999888776543331 0
Q ss_pred CccccccccccceeeEEEe-CCEEEEeccCCCC---------CceeccceEEEeCCCCceEEcCCCCCCCC-----CCcc
Q 011881 273 PNAFFADMLKPIATGMTSY-MGRLCVPQSLYSW---------PFFVDVGGEIYDPDTNSWVEMPIGMGEGW-----PARQ 337 (475)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~---------~~~~~~~~~~yd~~~~~W~~~~~~~~~~~-----p~~~ 337 (475)
.....- +++++++.+.+.. ....+...+.+|+.+++...+..... .+ ....
T Consensus 286 -------------~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~~~~~~~~~ 351 (396)
T 3c5m_A 286 -------------SHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHST-SWDVLDGDRQI 351 (396)
T ss_dssp -------------EEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCC-CCCCBTTBSST
T ss_pred -------------CCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCC-ccccccccccC
Confidence 111233 6776665432100 00001223788998887766543111 00 0000
Q ss_pred CCCeEEEEECCe-EEEEcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 338 AGTKLSVVLDGE-LYAFDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 338 ~~~~~~~~~~~~-lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
.........+++ |++..... ....++.+|+.+..++.+.
T Consensus 352 ~~~~~~~s~dg~~l~~~s~~~--~~~~l~~~~~~~~~~~~~~ 391 (396)
T 3c5m_A 352 THPHPSFTPNDDGVLFTSDFE--GVPAIYIADVPESYKHLEH 391 (396)
T ss_dssp TCCCCEECTTSSEEEEEECTT--SSCEEEEEECCTTCC----
T ss_pred CCCCceEccCCCeEEEEecCC--CCceEEEEEEccccccccc
Confidence 001112333554 44443322 2347999998888877653
No 195
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=83.38 E-value=39 Score=33.79 Aligned_cols=148 Identities=9% Similarity=0.018 Sum_probs=72.2
Q ss_pred EEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccc---eeeeEEE--C-CEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 182 LYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRA---YCKTGIL--N-DKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 182 lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~---~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
+++.|+.+ ..+.+||..+.+-... +..... ...++.+ + ++.++.|+. ...+.+||..+
T Consensus 175 ~l~~~~~d-----~~v~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~ 238 (615)
T 1pgu_A 175 RSMTVGDD-----GSVVFYQGPPFKFSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGS---------DRKISCFDGKS 238 (615)
T ss_dssp EEEEEETT-----TEEEEEETTTBEEEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEET---------TCCEEEEETTT
T ss_pred EEEEEeCC-----CcEEEEeCCCcceeee--ecccCCCCceEEEEEECCCCCCEEEEEeC---------CCeEEEEECCC
Confidence 56666543 3678888766543322 111111 2222233 4 677777764 25789999988
Q ss_pred CCeEecC-CCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCC
Q 011881 256 DAWSEVP-SMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWP 334 (475)
Q Consensus 256 ~~W~~~~-~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p 334 (475)
.+....- ......... + .++...++..++.++.++ ...+||..+.+-...-..... +
T Consensus 239 ~~~~~~~~~~~~~~~~~------------v-~~~~~~~~~~l~~~~~d~-------~i~~wd~~~~~~~~~~~~~~~--~ 296 (615)
T 1pgu_A 239 GEFLKYIEDDQEPVQGG------------I-FALSWLDSQKFATVGADA-------TIRVWDVTTSKCVQKWTLDKQ--Q 296 (615)
T ss_dssp CCEEEECCBTTBCCCSC------------E-EEEEESSSSEEEEEETTS-------EEEEEETTTTEEEEEEECCTT--C
T ss_pred CCEeEEecccccccCCc------------e-EEEEEcCCCEEEEEcCCC-------cEEEEECCCCcEEEEEcCCCC--c
Confidence 7643321 100011110 0 222222777777766543 237889887665432110100 0
Q ss_pred CccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCC
Q 011881 335 ARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 335 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 372 (475)
.... ...++..++..++.|+.+ +.+.+||..+.
T Consensus 297 ~~~~-~~~~~~~~~~~l~~~~~~----g~i~~~d~~~~ 329 (615)
T 1pgu_A 297 LGNQ-QVGVVATGNGRIISLSLD----GTLNFYELGHD 329 (615)
T ss_dssp GGGC-EEEEEEEETTEEEEEETT----SCEEEEETTEE
T ss_pred ccCc-eeEEEeCCCCeEEEEECC----CCEEEEECCCC
Confidence 1111 111233366666666643 57888988763
No 196
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=82.96 E-value=20 Score=37.38 Aligned_cols=147 Identities=12% Similarity=0.011 Sum_probs=77.5
Q ss_pred cceEEEEeCCC------C--cEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCC---CeEecC
Q 011881 194 MRCVRRYDPIA------N--TWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTD---AWSEVP 262 (475)
Q Consensus 194 ~~~~~~yd~~t------~--~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~---~W~~~~ 262 (475)
.++++.+|..+ . .++.+..-..... ......+++||+.+... .....+..+|..+. .|+.+.
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~------~~~~~l~~~d~~~~~~~~~~~l~ 330 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRH------SPNYRLINIDFTDPEESKWKVLV 330 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTT------CTTCEEEEEETTSCCGGGCEEEE
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCC------CCCCEEEEEeCCCCCcccceecc
Confidence 56899999876 4 5777654222221 12223467888886431 12467899998875 488764
Q ss_pred CCCccccCCCCccccccccccceeeEEEe-CCEEEEeccCCCCCceeccceEEEeCCCCc-eEEcCCCCCCCCCCccCCC
Q 011881 263 SMPFSRAQGLPNAFFADMLKPIATGMTSY-MGRLCVPQSLYSWPFFVDVGGEIYDPDTNS-WVEMPIGMGEGWPARQAGT 340 (475)
Q Consensus 263 ~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~p~~~~~~ 340 (475)
+-.....- ..+... ++.+++....++. ...+++|+.+++ ...+.. + .+.
T Consensus 331 ~~~~~~~~---------------~~~~~~~~~~lv~~~~~~g~-----~~l~~~~~~~g~~~~~l~~------~---~~~ 381 (710)
T 2xdw_A 331 PEHEKDVL---------------EWVACVRSNFLVLCYLHDVK-----NTLQLHDLATGALLKIFPL------E---VGS 381 (710)
T ss_dssp CCCSSCEE---------------EEEEEETTTEEEEEEEETTE-----EEEEEEETTTCCEEEEECC------C---SSE
T ss_pred CCCCCCeE---------------EEEEEEcCCEEEEEEEECCE-----EEEEEEECCCCCEEEecCC------C---Cce
Confidence 32111010 233444 6777765443321 123678886654 455543 1 111
Q ss_pred eEEEEE--CC-eEEEEcCCCCCCCCeEEEEeCCCCc--EEEc
Q 011881 341 KLSVVL--DG-ELYAFDPSSSLNSAKIKVYDQKEDT--WKVV 377 (475)
Q Consensus 341 ~~~~~~--~~-~lyv~GG~~~~~~~~v~~yd~~~~~--W~~v 377 (475)
...+.. ++ .|++. ..+......++.||+.+++ .+.+
T Consensus 382 v~~~~~s~d~~~l~~~-~ss~~~P~~i~~~d~~tg~~~~~~l 422 (710)
T 2xdw_A 382 VVGYSGQKKDTEIFYQ-FTSFLSPGIIYHCDLTKEELEPRVF 422 (710)
T ss_dssp EEEEECCTTCSEEEEE-EECSSCCCEEEEEETTSSSCCCEEE
T ss_pred EEEEecCCCCCEEEEE-EeCCCCCCEEEEEECCCCccceEEe
Confidence 111222 34 34433 2222234689999998877 6554
No 197
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=82.45 E-value=33 Score=32.30 Aligned_cols=186 Identities=11% Similarity=0.061 Sum_probs=88.4
Q ss_pred EEEEEcCCCCCCCcceEEEEeCCCCcEEeCC--CCCCccce-eeeEEE---CCEEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 181 CLYVLGGFSRTSAMRCVRRYDPIANTWNEAT--SMSVGRAY-CKTGIL---NDKLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 181 ~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~R~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
..++.|+.+ ..+.+||..+.+-...- ..+..... .....+ ++.+++.|+.+ ..+.+||..
T Consensus 171 ~~l~s~s~D-----~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D---------~~v~~wd~~ 236 (380)
T 3iz6_a 171 TRLITGSGD-----QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD---------TTVRLWDLR 236 (380)
T ss_dssp SCEEEECTT-----SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT---------SCEEEEETT
T ss_pred CEEEEECCC-----CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC---------CeEEEEECC
Confidence 344555543 36788898887654321 22222111 112222 56788888752 578889986
Q ss_pred CCC--eEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCC
Q 011881 255 TDA--WSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGE 331 (475)
Q Consensus 255 t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 331 (475)
... -..+..- ... + .+++ .-+++.++.|+.++. ...||..+++-...-.....
T Consensus 237 ~~~~~~~~~~~h---~~~-------------v-~~v~~~p~~~~l~s~s~D~~-------i~lwd~~~~~~~~~~~~~~~ 292 (380)
T 3iz6_a 237 ITSRAVRTYHGH---EGD-------------I-NSVKFFPDGQRFGTGSDDGT-------CRLFDMRTGHQLQVYNREPD 292 (380)
T ss_dssp TTCCCCEEECCC---SSC-------------C-CEEEECTTSSEEEEECSSSC-------EEEEETTTTEEEEEECCCCS
T ss_pred CCCcceEEECCc---CCC-------------e-EEEEEecCCCeEEEEcCCCe-------EEEEECCCCcEEEEeccccc
Confidence 321 1111110 000 0 2222 236677777776542 37888887654332110100
Q ss_pred CCCCcc-CCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEE-EeCCeEEEEeecC
Q 011881 332 GWPARQ-AGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLS-AFHGKLHVLTKDA 409 (475)
Q Consensus 332 ~~p~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~-~~~~~l~v~GG~~ 409 (475)
...... .-.+.+...++++++.|+.+ ..+.+||..+.+-......+.. ....+. .++. .-+++.++.|+.+
T Consensus 293 ~~~~~~~~v~~~~~s~~g~~l~~g~~d----g~i~vwd~~~~~~~~~~~~~~~--~h~~~v-~~l~~s~dg~~l~sgs~D 365 (380)
T 3iz6_a 293 RNDNELPIVTSVAFSISGRLLFAGYSN----GDCYVWDTLLAEMVLNLGTLQN--SHEGRI-SCLGLSSDGSALCTGSWD 365 (380)
T ss_dssp SSCCSSCSCSEEEECSSSSEEEEECTT----SCEEEEETTTCCEEEEECCSCS--SCCCCC-CEEEECSSSSEEEEECTT
T ss_pred ccccccCceEEEEECCCCCEEEEEECC----CCEEEEECCCCceEEEEecccC--CCCCce-EEEEECCCCCEEEEeeCC
Confidence 000000 11222333477777777643 5799999877654321111110 011111 2233 3467777777655
Q ss_pred CC
Q 011881 410 SR 411 (475)
Q Consensus 410 ~~ 411 (475)
+.
T Consensus 366 ~~ 367 (380)
T 3iz6_a 366 KN 367 (380)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 198
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=81.95 E-value=30 Score=31.44 Aligned_cols=161 Identities=13% Similarity=0.074 Sum_probs=78.0
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCC-cc-ce-eeeEEE-CCEEEEE----eceec----CCCCcccCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSV-GR-AY-CKTGIL-NDKLYVV----GGVSR----ARGGLTPLQ 246 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~R-~~-~~~~~~-~~~iyv~----GG~~~----~~~~~~~~~ 246 (475)
+++||+.... ...+.+||+. .+.+.+..... .+ .. ..+++. +++||+. |-... .........
T Consensus 96 dG~l~v~~~~-----~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~ 169 (305)
T 3dr2_A 96 QQRLVHCEHG-----RRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHH 169 (305)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred CCCEEEEECC-----CCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCC
Confidence 5778876321 2468888886 66665532211 11 11 123332 6789985 32110 000011235
Q ss_pred eEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEE-eCC-EEEEeccCCCCCceeccceEEEeCCCCceEE
Q 011881 247 SAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-YMG-RLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE 324 (475)
Q Consensus 247 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~ 324 (475)
.+++||+.+++.+.+. ..... .+++. -++ .||+.......... ....+||...+....
T Consensus 170 ~v~~~d~~~g~~~~~~--~~~~p----------------~gl~~spdg~~lyv~~~~~~~~~~--~~i~~~~~~~~~l~~ 229 (305)
T 3dr2_A 170 SVYRLPPDGSPLQRMA--DLDHP----------------NGLAFSPDEQTLYVSQTPEQGHGS--VEITAFAWRDGALHD 229 (305)
T ss_dssp EEEEECSSSCCCEEEE--EESSE----------------EEEEECTTSSEEEEEECCC---CC--CEEEEEEEETTEEEE
T ss_pred eEEEEcCCCCcEEEEe--cCCCC----------------cceEEcCCCCEEEEEecCCcCCCC--CEEEEEEecCCCccC
Confidence 7999999988877654 11111 23332 244 47875432100000 123678776554221
Q ss_pred ---cCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEc
Q 011881 325 ---MPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVV 377 (475)
Q Consensus 325 ---~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 377 (475)
+.. ...+.| .+ .+.-.+|.||+..+ +.|.+||++...-..+
T Consensus 230 ~~~~~~-~~~~~p---dg--i~~d~~G~lwv~~~------~gv~~~~~~g~~~~~~ 273 (305)
T 3dr2_A 230 RRHFAS-VPDGLP---DG--FCVDRGGWLWSSSG------TGVCVFDSDGQLLGHI 273 (305)
T ss_dssp EEEEEC-CSSSCC---CS--EEECTTSCEEECCS------SEEEEECTTSCEEEEE
T ss_pred CeEEEE-CCCCCC---Ce--EEECCCCCEEEecC------CcEEEECCCCCEEEEE
Confidence 111 111111 11 13334678888653 4699999977665554
No 199
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=81.93 E-value=24 Score=35.46 Aligned_cols=132 Identities=11% Similarity=0.015 Sum_probs=69.0
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCc-cccCC
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPF-SRAQG 271 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~ 271 (475)
..+.+||..+.+... ..+.........+.+ ++++++.|+. ...+.+||..+.+-... +.. ....
T Consensus 467 ~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~---------dg~i~iw~~~~~~~~~~--~~~~h~~~- 533 (615)
T 1pgu_A 467 NTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDV---------MGKILLYDLQSREVKTS--RWAFRTSK- 533 (615)
T ss_dssp SCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEET---------TSCEEEEETTTTEEEEC--CSCCCSSC-
T ss_pred CeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCC---------CCeEEEeeCCCCcceeE--eecCCCCc-
Confidence 368889988876643 222222222233333 6777777774 25789999987653322 221 1111
Q ss_pred CCccccccccccceeeEE-Ee----------CCEEEEeccCCCCCceeccceEEEeCCCC-c-eEEcCCCCCCCCCCccC
Q 011881 272 LPNAFFADMLKPIATGMT-SY----------MGRLCVPQSLYSWPFFVDVGGEIYDPDTN-S-WVEMPIGMGEGWPARQA 338 (475)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~-~~----------~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-~-W~~~~~~~~~~~p~~~~ 338 (475)
+ .+++ .- ++++.+.|+.++ ...+||..+. + ...+.. . ...
T Consensus 534 ------------v-~~~~~sp~~~~~~~~~~~~~~l~~~~~dg-------~i~iw~~~~~~~~~~~~~~-h------~~~ 586 (615)
T 1pgu_A 534 ------------I-NAISWKPAEKGANEEEIEEDLVATGSLDT-------NIFIYSVKRPMKIIKALNA-H------KDG 586 (615)
T ss_dssp ------------E-EEEEECCCC------CCSCCEEEEEETTS-------CEEEEESSCTTCCEEETTS-S------TTC
T ss_pred ------------e-eEEEEcCccccccccccCCCEEEEEcCCC-------cEEEEECCCCceechhhhc-C------ccc
Confidence 0 2222 22 677777776553 2378898875 2 233321 0 111
Q ss_pred CCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCC
Q 011881 339 GTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKE 371 (475)
Q Consensus 339 ~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~ 371 (475)
-.......+++ ++.+|.+ +.+.+||+++
T Consensus 587 v~~l~~s~~~~-l~s~~~d----~~v~iw~~~~ 614 (615)
T 1pgu_A 587 VNNLLWETPST-LVSSGAD----ACIKRWNVVL 614 (615)
T ss_dssp EEEEEEEETTE-EEEEETT----SCEEEEEEC-
T ss_pred eEEEEEcCCCC-eEEecCC----ceEEEEeeec
Confidence 11223456788 6666643 4677777654
No 200
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=81.85 E-value=36 Score=33.87 Aligned_cols=173 Identities=11% Similarity=0.119 Sum_probs=79.4
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
+++.++.|+.+ ..+.+||.....-..+.....+ -.+++.. ++++++.++. ...+.+||.....
T Consensus 396 dg~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~~--v~~~~~s~d~~~l~~~~~---------d~~v~~w~~~~~~ 459 (577)
T 2ymu_A 396 DGQTIASASDD-----KTVKLWNRNGQLLQTLTGHSSS--VWGVAFSPDDQTIASASD---------DKTVKLWNRNGQL 459 (577)
T ss_dssp TSSCEEEEETT-----SEEEEECTTCCEEEEEECCSSC--EEEEEECTTSSEEEEEET---------TSEEEEEETTSCE
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCCEEEEecCCCCC--eEEEEECCCCCEEEEEcC---------CCEEEEEECCCCE
Confidence 45556666543 3577787544333332211111 1112222 5666666663 2468888875543
Q ss_pred eEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCc
Q 011881 258 WSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPAR 336 (475)
Q Consensus 258 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~ 336 (475)
-..+.....+. .+++ .-++++.+.|+.++ ...+||.....-..+... .
T Consensus 460 ~~~~~~~~~~v-----------------~~~~~spd~~~las~~~d~-------~i~iw~~~~~~~~~~~~h-------~ 508 (577)
T 2ymu_A 460 LQTLTGHSSSV-----------------RGVAFSPDGQTIASASDDK-------TVKLWNRNGQLLQTLTGH-------S 508 (577)
T ss_dssp EEEEECCSSCE-----------------EEEEECTTSCEEEEEETTS-------EEEEEETTSCEEEEEECC-------S
T ss_pred EEEEcCCCCCE-----------------EEEEEcCCCCEEEEEeCCC-------EEEEEcCCCCEEEEEeCC-------C
Confidence 33332111110 2222 33666666665443 236677543322222210 0
Q ss_pred cCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEE-EeCCeEEEEeecCC
Q 011881 337 QAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLS-AFHGKLHVLTKDAS 410 (475)
Q Consensus 337 ~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~-~~~~~l~v~GG~~~ 410 (475)
..-...+...++++++.|+.+ ..|.+||.....-..+.. ....-.+++ .-+++.++.||.++
T Consensus 509 ~~v~~l~~s~dg~~l~s~~~d----g~v~lwd~~~~~~~~~~~--------h~~~v~~~~fs~dg~~l~s~~~D~ 571 (577)
T 2ymu_A 509 SSVRGVAFSPDGQTIASASDD----KTVKLWNRNGQLLQTLTG--------HSSSVWGVAFSPDGQTIASASSDK 571 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETT----SEEEEECTTSCEEEEEEC--------CSSCEEEEEECTTSSCEEEEETTS
T ss_pred CCEEEEEEcCCCCEEEEEECc----CEEEEEeCCCCEEEEEcC--------CCCCEEEEEEcCCCCEEEEEeCCC
Confidence 000111223467777777643 578899975544433321 111112233 23677777776543
No 201
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=81.56 E-value=36 Score=32.18 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=57.0
Q ss_pred CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCC
Q 011881 226 NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSW 304 (475)
Q Consensus 226 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~ 304 (475)
+++.++.|+. ...+.+||..+.+-...-.-. ... + .+++ .-++...+.|+.++
T Consensus 134 dg~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~h--~~~-------------v-~~~~~~p~~~~l~s~s~d~- 187 (393)
T 1erj_A 134 DGKFLATGAE---------DRLIRIWDIENRKIVMILQGH--EQD-------------I-YSLDYFPSGDKLVSGSGDR- 187 (393)
T ss_dssp TSSEEEEEET---------TSCEEEEETTTTEEEEEECCC--SSC-------------E-EEEEECTTSSEEEEEETTS-
T ss_pred CCCEEEEEcC---------CCeEEEEECCCCcEEEEEccC--CCC-------------E-EEEEEcCCCCEEEEecCCC-
Confidence 5677777764 257889999887543221100 000 0 2222 22455556665443
Q ss_pred CceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEE--CCeEEEEcCCCCCCCCeEEEEeCCCCcEE
Q 011881 305 PFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVL--DGELYAFDPSSSLNSAKIKVYDQKEDTWK 375 (475)
Q Consensus 305 ~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~W~ 375 (475)
...+||..+++....-. .. .....++.. ++++++.|+.+ ..+.+||..+..-.
T Consensus 188 ------~v~iwd~~~~~~~~~~~-~~-------~~v~~~~~~~~~~~~l~~~s~d----~~v~iwd~~~~~~~ 242 (393)
T 1erj_A 188 ------TVRIWDLRTGQCSLTLS-IE-------DGVTTVAVSPGDGKYIAAGSLD----RAVRVWDSETGFLV 242 (393)
T ss_dssp ------EEEEEETTTTEEEEEEE-CS-------SCEEEEEECSTTCCEEEEEETT----SCEEEEETTTCCEE
T ss_pred ------cEEEEECCCCeeEEEEE-cC-------CCcEEEEEECCCCCEEEEEcCC----CcEEEEECCCCcEE
Confidence 23778988876543221 10 111112222 67788887743 57899999877543
No 202
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=81.48 E-value=31 Score=31.27 Aligned_cols=65 Identities=12% Similarity=0.014 Sum_probs=35.7
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
++.+.+.|+.+ ..+.+||..+.+-...-.............-++++++.|+. -..+.+||..+++
T Consensus 24 ~~~~l~s~~~d-----g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~---------d~~i~vwd~~~~~ 88 (304)
T 2ynn_A 24 TEPWVLTTLYS-----GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD---------DFRIRVFNYNTGE 88 (304)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET---------TSEEEEEETTTCC
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECC---------CCEEEEEECCCCc
Confidence 55666677654 36788888876543221111111111112225666667764 2578999998875
No 203
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=81.20 E-value=20 Score=33.05 Aligned_cols=202 Identities=12% Similarity=0.027 Sum_probs=97.5
Q ss_pred eEEEe--CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCc---cceeeeEEE--CCEEEEEeceecCCCC-----
Q 011881 174 AIGAV--DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVG---RAYCKTGIL--NDKLYVVGGVSRARGG----- 241 (475)
Q Consensus 174 ~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~---R~~~~~~~~--~~~iyv~GG~~~~~~~----- 241 (475)
+++.. ++.|||.... ..+.+||+.+++.+.+...... ..-..+++. ++.||+.-........
T Consensus 84 gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 84 DISYNLQNNQLYIVDCY------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp EEEEETTTTEEEEEETT------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred eEEEcCCCCcEEEEECC------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence 44444 6889987421 2488899887766555322111 111223333 5789986421100000
Q ss_pred ---cccCCeEEEEeCCCCCeEecCC-CCccccCCCCccccccccccceeeEEEe-CC-EEEEeccCCCCCceeccceEEE
Q 011881 242 ---LTPLQSAEVFDPTTDAWSEVPS-MPFSRAQGLPNAFFADMLKPIATGMTSY-MG-RLCVPQSLYSWPFFVDVGGEIY 315 (475)
Q Consensus 242 ---~~~~~~~~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~y 315 (475)
......+++||+.+.+.+.+.. +..| .+++.- ++ .|||.-... ....+|
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p------------------~gia~~~dg~~lyv~d~~~-------~~I~~~ 212 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKETTLLLKELHVP------------------GGAEVSADSSFVLVAEFLS-------HQIVKY 212 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEEEEEEEEESCC------------------CEEEECTTSSEEEEEEGGG-------TEEEEE
T ss_pred hcccCCCceEEEEeCCCCEEEEeccCCccC------------------cceEECCCCCEEEEEeCCC-------CeEEEE
Confidence 0113578999998877654321 1111 333333 34 588853211 224788
Q ss_pred eCCCC---ceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCC------CCCCeEEEEeCCCCcEEEcCCcCccccC
Q 011881 316 DPDTN---SWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSS------LNSAKIKVYDQKEDTWKVVIGKVPIRDF 386 (475)
Q Consensus 316 d~~~~---~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~------~~~~~v~~yd~~~~~W~~v~~~~p~~~~ 386 (475)
|+... +.+.+.. . +.+ .+ .++--+|.|||...... .....|.+||++...-..+.. |.+.
T Consensus 213 ~~~~~~~~~~~~~~~-~----~gP-~g--i~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~--~~g~- 281 (322)
T 2fp8_A 213 WLEGPKKGTAEVLVK-I----PNP-GN--IKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPL--PPPF- 281 (322)
T ss_dssp ESSSTTTTCEEEEEE-C----SSE-EE--EEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEEC--CTTT-
T ss_pred ECCCCcCCccceEEe-C----CCC-CC--eEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEEC--CCCC-
Confidence 88753 3443322 1 111 11 12223578998753200 012469999997654444431 1110
Q ss_pred CCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCC
Q 011881 387 ADSESPYLLSAFHGKLHVLTKDASRNISILRADPR 421 (475)
Q Consensus 387 ~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~ 421 (475)
. .....+++..+++|||.. ..++. +..+++.
T Consensus 282 ~-~~~~~~~~~~~g~L~v~~-~~~~~--i~~~~~~ 312 (322)
T 2fp8_A 282 A-GEHFEQIQEHDGLLYIGT-LFHGS--VGILVYD 312 (322)
T ss_dssp T-TSCCCEEEEETTEEEEEC-SSCSE--EEEEEC-
T ss_pred c-cccceEEEEeCCEEEEee-cCCCc--eEEEecc
Confidence 0 122234555688888754 33344 4455544
No 204
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=81.14 E-value=19 Score=32.79 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=53.8
Q ss_pred cceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CC-EEEEEeceecCCCCcccCCeEEEEeCCCCCeEe---cCCCCccc
Q 011881 194 MRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-ND-KLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSE---VPSMPFSR 268 (475)
Q Consensus 194 ~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~---~~~~p~~r 268 (475)
...+++||+.+.+.+.+..+ .. ....+.. ++ .||+...... ......+++||...+.... +...+...
T Consensus 168 ~~~v~~~d~~~g~~~~~~~~--~~-p~gl~~spdg~~lyv~~~~~~----~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~ 240 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQRMADL--DH-PNGLAFSPDEQTLYVSQTPEQ----GHGSVEITAFAWRDGALHDRRHFASVPDGL 240 (305)
T ss_dssp CEEEEEECSSSCCCEEEEEE--SS-EEEEEECTTSSEEEEEECCC-------CCCEEEEEEEETTEEEEEEEEECCSSSC
T ss_pred CCeEEEEcCCCCcEEEEecC--CC-CcceEEcCCCCEEEEEecCCc----CCCCCEEEEEEecCCCccCCeEEEECCCCC
Confidence 46799999988887766411 11 1123333 34 5888753210 0012578899887654221 11111100
Q ss_pred cCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCC
Q 011881 269 AQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPI 327 (475)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~ 327 (475)
. .+++ --+|+||+..+ .+..+||++...-..+..
T Consensus 241 p----------------dgi~~d~~G~lwv~~~---------~gv~~~~~~g~~~~~~~~ 275 (305)
T 3dr2_A 241 P----------------DGFCVDRGGWLWSSSG---------TGVCVFDSDGQLLGHIPT 275 (305)
T ss_dssp C----------------CSEEECTTSCEEECCS---------SEEEEECTTSCEEEEEEC
T ss_pred C----------------CeEEECCCCCEEEecC---------CcEEEECCCCCEEEEEEC
Confidence 0 2222 34678888542 345899997666655543
No 205
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=80.88 E-value=39 Score=32.11 Aligned_cols=166 Identities=13% Similarity=0.137 Sum_probs=83.9
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCC---CC--------------ccceeeeEEE---CCEEEEEeceecC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSM---SV--------------GRAYCKTGIL---NDKLYVVGGVSRA 238 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~---p~--------------~R~~~~~~~~---~~~iyv~GG~~~~ 238 (475)
.+.||+.+. ..-+++.+-...+|+.+... |. ...-+.+++. .+.||+....
T Consensus 128 ~~~l~~g~~------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~--- 198 (394)
T 3b7f_A 128 PGTWYAGTS------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS--- 198 (394)
T ss_dssp TTCEEEEEE------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET---
T ss_pred CCEEEEEec------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC---
Confidence 567877542 13588888888899987532 21 1112233332 2578875431
Q ss_pred CCCcccCCeEEEEeCCCCCeEecCCC------CccccCCCCccccccccccceeeEEEeC---CEEEEeccCCCCCceec
Q 011881 239 RGGLTPLQSAEVFDPTTDAWSEVPSM------PFSRAQGLPNAFFADMLKPIATGMTSYM---GRLCVPQSLYSWPFFVD 309 (475)
Q Consensus 239 ~~~~~~~~~~~~yd~~t~~W~~~~~~------p~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~iyv~GG~~~~~~~~~ 309 (475)
..+++.+-...+|+.+..- |.+.... . ...+.++... +.||+...
T Consensus 199 -------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~--g--------~~~~~i~~~~~~~~~l~vg~~--------- 252 (394)
T 3b7f_A 199 -------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEF--G--------HDPHCVVQHPAAPDILYQQNH--------- 252 (394)
T ss_dssp -------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSS--C--------BCEEEEEECSSSTTEEEEEET---------
T ss_pred -------CCEEEECCCCCCceECCCCccccccCCCcccc--C--------cceeEEEECCCCCCEEEEEcC---------
Confidence 3477777778899987531 1111000 0 0013344332 67777321
Q ss_pred cceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEE---ECCeEEEEcCCCC--------CCCCeEEEEeCCCCcEEEcC
Q 011881 310 VGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVV---LDGELYAFDPSSS--------LNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 310 ~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~---~~~~lyv~GG~~~--------~~~~~v~~yd~~~~~W~~v~ 378 (475)
.+.++++-...+|+.+...++. .....+.. +++ -.+.||+...... .....++.-.-.-.+|+.+.
T Consensus 253 ~gl~~s~D~G~tW~~~~~~l~~--~~~~~~~~-i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~ 329 (394)
T 3b7f_A 253 CGIYRMDRREGVWKRIGDAMPR--EVGDIGFP-IVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD 329 (394)
T ss_dssp TEEEEEETTTTEEECGGGGSCT--TTCSCEEE-EEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC
T ss_pred CeEEEeCCCCCcceECCCCCCC--CCccceEE-EEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC
Confidence 2347777788999988642221 00011111 233 2467888631110 01123443333346899986
Q ss_pred CcCc
Q 011881 379 GKVP 382 (475)
Q Consensus 379 ~~~p 382 (475)
..+|
T Consensus 330 ~glp 333 (394)
T 3b7f_A 330 RGLP 333 (394)
T ss_dssp BTSC
T ss_pred CCCC
Confidence 4344
No 206
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=80.84 E-value=6.6 Score=36.22 Aligned_cols=68 Identities=16% Similarity=0.008 Sum_probs=38.6
Q ss_pred ECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEE-EeCC-EEEEeccCC
Q 011881 225 LNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMG-RLCVPQSLY 302 (475)
Q Consensus 225 ~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~-~iyv~GG~~ 302 (475)
.++++|+.++. ...+.++|+.+++....-+.+....- ..++ .-++ .+|+.+..+
T Consensus 9 ~~~~~~v~~~~---------~~~v~~~d~~~~~~~~~~~~~~~~~~---------------~~~~~s~dg~~~~v~~~~~ 64 (349)
T 1jmx_B 9 AGHEYMIVTNY---------PNNLHVVDVASDTVYKSCVMPDKFGP---------------GTAMMAPDNRTAYVLNNHY 64 (349)
T ss_dssp TTCEEEEEEET---------TTEEEEEETTTTEEEEEEECSSCCSS---------------CEEEECTTSSEEEEEETTT
T ss_pred CCCEEEEEeCC---------CCeEEEEECCCCcEEEEEecCCCCCC---------------ceeEECCCCCEEEEEeCCC
Confidence 36788888763 36899999998865432222210011 2222 3344 477765322
Q ss_pred CCCceeccceEEEeCCCCceE
Q 011881 303 SWPFFVDVGGEIYDPDTNSWV 323 (475)
Q Consensus 303 ~~~~~~~~~~~~yd~~~~~W~ 323 (475)
....+||+.+++-.
T Consensus 65 -------~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 65 -------GDIYGIDLDTCKNT 78 (349)
T ss_dssp -------TEEEEEETTTTEEE
T ss_pred -------CcEEEEeCCCCcEE
Confidence 12478999887654
No 207
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=80.73 E-value=30 Score=35.29 Aligned_cols=125 Identities=14% Similarity=0.201 Sum_probs=67.0
Q ss_pred eeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCC--eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEe
Q 011881 221 KTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA--WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVP 298 (475)
Q Consensus 221 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~ 298 (475)
+.++.+++||+.... ..++.+|.+|.+ |+.-...+..... .+ + ....+.++.+++||+.
T Consensus 63 ~P~v~~g~vyv~~~~----------~~v~AlD~~tG~~~W~~~~~~~~~~~~---~~---~---~~~~g~a~~~~~v~~~ 123 (582)
T 1flg_A 63 QAIVSDGVIYVTASY----------SRLFALDAKTGKRLWTYNHRLPDDIRP---CC---D---VVNRGAAIYGDKVFFG 123 (582)
T ss_dssp CCEEETTEEEEEETT----------TEEEEEESSSCCEEEEEECCCCTTCCC---SS---C---SCCCCCEEETTEEEEE
T ss_pred ccEEECCEEEEEcCC----------CCEEEEECCCCcEEEEEcCCCCccccc---cc---c---cCCCccEEECCEEEEE
Confidence 446789999998652 248999998775 9875433221000 00 0 0002345678999884
Q ss_pred ccCCCCCceeccceEEEeCCCCc--eEEcCCCCCCCCCCccCCCeEEEEECC------eEEEEcCCC-CCCCCeEEEEeC
Q 011881 299 QSLYSWPFFVDVGGEIYDPDTNS--WVEMPIGMGEGWPARQAGTKLSVVLDG------ELYAFDPSS-SLNSAKIKVYDQ 369 (475)
Q Consensus 299 GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~p~~~~~~~~~~~~~~------~lyv~GG~~-~~~~~~v~~yd~ 369 (475)
.. + -....+|.++++ |+.-....... ...... -++.++ .||+-.... ......++.||+
T Consensus 124 t~-d-------g~l~AlD~~TG~~~W~~~~~~~~~~--~~~~~s--P~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~ 191 (582)
T 1flg_A 124 TL-D-------ASVVALNKNTGKVVWKKKFADHGAG--YTMTGA--PTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDP 191 (582)
T ss_dssp ET-T-------TEEEEEESSSCCEEEEEECSCGGGT--CBCCSC--CEEEECTTTCCEEEEECCBCGGGCCBCEEEEECT
T ss_pred eC-C-------CEEEEEECCCCCEEeeecCCCCCcC--cccccC--CEEeCCCcCCcEEEEEeccccccCCCCEEEEEEC
Confidence 21 1 123789998875 88632211000 011111 244555 666532110 012358999999
Q ss_pred CCCc--EEE
Q 011881 370 KEDT--WKV 376 (475)
Q Consensus 370 ~~~~--W~~ 376 (475)
++.+ |+.
T Consensus 192 ~tG~~~W~~ 200 (582)
T 1flg_A 192 DTGEEIWMR 200 (582)
T ss_dssp TTCCEEEEE
T ss_pred CCCCEEeec
Confidence 8765 865
No 208
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=80.64 E-value=42 Score=32.35 Aligned_cols=65 Identities=12% Similarity=-0.059 Sum_probs=36.9
Q ss_pred CEEEEeccCCCCCceeccceEEEeCCCCceEEc-CCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCC
Q 011881 293 GRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEM-PIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKE 371 (475)
Q Consensus 293 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~ 371 (475)
+++++.|+.++ ...+||+.+.+-... .... ......++..++++++.|+. .+.|.+||..+
T Consensus 210 ~~~l~s~~~d~-------~i~vwd~~~~~~~~~~~~~h-------~~~v~~~~~sd~~~l~s~~~----d~~v~vwd~~~ 271 (450)
T 2vdu_B 210 HQFIITSDRDE-------HIKISHYPQCFIVDKWLFGH-------KHFVSSICCGKDYLLLSAGG----DDKIFAWDWKT 271 (450)
T ss_dssp CEEEEEEETTS-------CEEEEEESCTTCEEEECCCC-------SSCEEEEEECSTTEEEEEES----SSEEEEEETTT
T ss_pred CcEEEEEcCCC-------cEEEEECCCCceeeeeecCC-------CCceEEEEECCCCEEEEEeC----CCeEEEEECCC
Confidence 77777776553 237788877654332 1100 01111122227777777773 35899999988
Q ss_pred CcEE
Q 011881 372 DTWK 375 (475)
Q Consensus 372 ~~W~ 375 (475)
.+-.
T Consensus 272 ~~~~ 275 (450)
T 2vdu_B 272 GKNL 275 (450)
T ss_dssp CCEE
T ss_pred CcEe
Confidence 7643
No 209
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=80.47 E-value=33 Score=31.05 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=32.7
Q ss_pred CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCC
Q 011881 292 MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKE 371 (475)
Q Consensus 292 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~ 371 (475)
++++++.|+.++ ...+||..+.+-...-. . . .....++...+..++.++. .+.+.+||.++
T Consensus 226 ~~~~l~s~s~Dg-------~i~iwd~~~~~~~~~~~-~------~-~~v~~~~~~~~~~~~~~~~----d~~i~iwd~~~ 286 (340)
T 4aow_A 226 DGSLCASGGKDG-------QAMLWDLNEGKHLYTLD-G------G-DIINALCFSPNRYWLCAAT----GPSIKIWDLEG 286 (340)
T ss_dssp TSSEEEEEETTC-------EEEEEETTTTEEEEEEE-C------S-SCEEEEEECSSSSEEEEEE----TTEEEEEETTT
T ss_pred CCCEEEEEeCCC-------eEEEEEeccCceeeeec-C------C-ceEEeeecCCCCceeeccC----CCEEEEEECCC
Confidence 567777776553 23678887654322111 0 0 0111133333444445543 25788999887
Q ss_pred CcE
Q 011881 372 DTW 374 (475)
Q Consensus 372 ~~W 374 (475)
..-
T Consensus 287 ~~~ 289 (340)
T 4aow_A 287 KII 289 (340)
T ss_dssp TEE
T ss_pred CeE
Confidence 653
No 210
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=79.70 E-value=32 Score=30.42 Aligned_cols=148 Identities=10% Similarity=0.019 Sum_probs=80.1
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.||+.-.. .+.+.++|+....-+.+.+....+ -..+++. +++||+..... ....++++++...
T Consensus 90 ~~~lyv~d~~-----~~~I~~~~~~g~~~~~~~~~~~~~-P~~i~vd~~~g~lyv~~~~~-------~~~~I~~~~~dg~ 156 (267)
T 1npe_A 90 GRTIFWTDSQ-----LDRIEVAKMDGTQRRVLFDTGLVN-PRGIVTDPVRGNLYWTDWNR-------DNPKIETSHMDGT 156 (267)
T ss_dssp TTEEEEEETT-----TTEEEEEETTSCSCEEEECSSCSS-EEEEEEETTTTEEEEEECCS-------SSCEEEEEETTSC
T ss_pred CCeEEEEECC-----CCEEEEEEcCCCCEEEEEECCCCC-ccEEEEeeCCCEEEEEECCC-------CCcEEEEEecCCC
Confidence 6889988532 357888988765433332111111 1233443 68999975310 1357888887654
Q ss_pred CeEecC--CCCccccCCCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCC
Q 011881 257 AWSEVP--SMPFSRAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEG 332 (475)
Q Consensus 257 ~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~ 332 (475)
.-+.+. .+..| .+++.- ++.||+.-... ....+||+....-..+.....
T Consensus 157 ~~~~~~~~~~~~P------------------~gia~d~~~~~lyv~d~~~-------~~I~~~~~~g~~~~~~~~~~~-- 209 (267)
T 1npe_A 157 NRRILAQDNLGLP------------------NGLTFDAFSSQLCWVDAGT-------HRAECLNPAQPGRRKVLEGLQ-- 209 (267)
T ss_dssp CCEEEECTTCSCE------------------EEEEEETTTTEEEEEETTT-------TEEEEEETTEEEEEEEEECCC--
T ss_pred CcEEEEECCCCCC------------------cEEEEcCCCCEEEEEECCC-------CEEEEEecCCCceEEEecCCC--
Confidence 333221 11111 344433 57899864322 123788887543222221111
Q ss_pred CCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEE
Q 011881 333 WPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKV 376 (475)
Q Consensus 333 ~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 376 (475)
.| . + ++..++.||+... ..+.|.++|+++.+-..
T Consensus 210 ~P--~-g---i~~d~~~lyva~~----~~~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 210 YP--F-A---VTSYGKNLYYTDW----KTNSVIAMDLAISKEMD 243 (267)
T ss_dssp SE--E-E---EEEETTEEEEEET----TTTEEEEEETTTTEEEE
T ss_pred Cc--e-E---EEEeCCEEEEEEC----CCCeEEEEeCCCCCceE
Confidence 12 1 1 4567899999854 23689999998876543
No 211
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=79.54 E-value=15 Score=36.32 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCC-cCc--cccCCCCCCCeEEEEeCCeEEEEeec
Q 011881 347 DGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIG-KVP--IRDFADSESPYLLSAFHGKLHVLTKD 408 (475)
Q Consensus 347 ~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~-~~p--~~~~~~~r~~~~~~~~~~~l~v~GG~ 408 (475)
++++|+|-| +..|+||..+++-..--+ .+. .+.++ ...-++...++++|+|-|.
T Consensus 367 ~~k~yfFkG------~~yw~yd~~~~~~~~gYPk~I~~~fpgip--~~iDAA~~~~g~~YFFkg~ 423 (450)
T 1su3_A 367 TGKTYFFVA------NKYWRYDEYKRSMDPGYPKMIAHDFPGIG--HKVDAVFMKDGFFYFFHGT 423 (450)
T ss_dssp TTEEEEEET------TEEEEEETTTTEECSSCSEEHHHHSTTSC--SCCSEEEEETTEEEEEETT
T ss_pred CCeEEEEeC------CEEEEEeCCCccccCCCCcchhhcCCCCC--CCccEEEEcCCeEEEEeCC
Confidence 589999977 589999987653221000 000 01222 1223444578999999763
No 212
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=78.79 E-value=65 Score=33.35 Aligned_cols=150 Identities=11% Similarity=0.026 Sum_probs=76.6
Q ss_pred cceEEEEeCCCCcEE--eCCCCCCc-cceeeeEE-ECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCcccc
Q 011881 194 MRCVRRYDPIANTWN--EATSMSVG-RAYCKTGI-LNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRA 269 (475)
Q Consensus 194 ~~~~~~yd~~t~~W~--~~~~~p~~-R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~ 269 (475)
...++++++.+.+-+ .+...+.. ........ -+++..++...... ....++.+|..+..|+.+..-....
T Consensus 201 ~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~l~~~~~~~- 274 (695)
T 2bkl_A 201 YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW-----SENDVYWKRPGEKDFRLLVKGVGAK- 274 (695)
T ss_dssp GCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT-----TEEEEEEECTTCSSCEEEEECSSCC-
T ss_pred CCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC-----CceEEEEEcCCCCceEEeecCCCce-
Confidence 456999998877632 22222221 22222222 25555555443211 2357788887777888765322111
Q ss_pred CCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCc---eEEcCCCCCCCCCCccCCCeEEEEE
Q 011881 270 QGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNS---WVEMPIGMGEGWPARQAGTKLSVVL 346 (475)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~---W~~~~~~~~~~~p~~~~~~~~~~~~ 346 (475)
...+..+|.+|+....+... .....+|+.+.. |+.+-.... ......++..
T Consensus 275 ----------------~~~~~~~g~l~~~s~~~~~~----~~l~~~d~~~~~~~~~~~l~~~~~------~~~l~~~~~~ 328 (695)
T 2bkl_A 275 ----------------YEVHAWKDRFYVLTDEGAPR----QRVFEVDPAKPARASWKEIVPEDS------SASLLSVSIV 328 (695)
T ss_dssp ----------------EEEEEETTEEEEEECTTCTT----CEEEEEBTTBCSGGGCEEEECCCS------SCEEEEEEEE
T ss_pred ----------------EEEEecCCcEEEEECCCCCC----CEEEEEeCCCCCccCCeEEecCCC------CCeEEEEEEE
Confidence 22223566666654322111 223778887655 887654110 1111113445
Q ss_pred CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEc
Q 011881 347 DGELYAFDPSSSLNSAKIKVYDQKEDTWKVV 377 (475)
Q Consensus 347 ~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 377 (475)
+++|++....+. ...++.+|+....-..+
T Consensus 329 ~~~lv~~~~~dg--~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 329 GGHLSLEYLKDA--TSEVRVATLKGKPVRTV 357 (695)
T ss_dssp TTEEEEEEEETT--EEEEEEEETTCCEEEEC
T ss_pred CCEEEEEEEECC--EEEEEEEeCCCCeeEEe
Confidence 888888764332 24788888765544444
No 213
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=78.60 E-value=44 Score=31.33 Aligned_cols=171 Identities=13% Similarity=0.107 Sum_probs=95.7
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCC--CCCCccceeeeEE--ECCEEEEEeceecCCCCcccCCeEEEEeC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEAT--SMSVGRAYCKTGI--LNDKLYVVGGVSRARGGLTPLQSAEVFDP 253 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 253 (475)
.++.||+.-- ....++++++....-+.+. .+..| ..+++ .+++||+.-.. .+.++++++
T Consensus 83 ~~~~ly~~D~-----~~~~I~r~~~~g~~~~~~~~~~~~~p---~glavd~~~g~ly~~d~~---------~~~I~~~~~ 145 (349)
T 3v64_C 83 RRELVFWSDV-----TLDRILRANLNGSNVEEVVSTGLESP---GGLAVDWVHDKLYWTDSG---------TSRIEVANL 145 (349)
T ss_dssp TTTEEEEEET-----TTTEEEEEETTSCSCEEEECSSCSCC---CEEEEETTTTEEEEEETT---------TTEEEEEET
T ss_pred cccEEEEEec-----cCCceEEEecCCCCceEEEeCCCCCc---cEEEEecCCCeEEEEcCC---------CCeEEEEcC
Confidence 3688998742 2357899999877655442 22222 23344 37899997542 358899998
Q ss_pred CCCCeEec--CCCCccccCCCCccccccccccceeeEEE--eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCC
Q 011881 254 TTDAWSEV--PSMPFSRAQGLPNAFFADMLKPIATGMTS--YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGM 329 (475)
Q Consensus 254 ~t~~W~~~--~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 329 (475)
....-+.+ ..+..| .++++ .++.||+..-... ...+++|+....-+.+.. .
T Consensus 146 dG~~~~~l~~~~l~~P------------------~~iavdp~~g~ly~td~~~~------~~I~r~~~dG~~~~~~~~-~ 200 (349)
T 3v64_C 146 DGAHRKVLLWQSLEKP------------------RAIALHPMEGTIYWTDWGNT------PRIEASSMDGSGRRIIAD-T 200 (349)
T ss_dssp TSCSCEEEECTTCSCE------------------EEEEEETTTTEEEEEECSSS------CEEEEEETTSCSCEESCC-S
T ss_pred CCCceEEEEeCCCCCc------------------ceEEEecCcCeEEEeccCCC------CEEEEEeCCCCCcEEEEE-C
Confidence 76543332 222222 23344 3788998642110 123788877654444322 1
Q ss_pred CCCCCCccCCCeEEEE--ECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEee
Q 011881 330 GEGWPARQAGTKLSVV--LDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTK 407 (475)
Q Consensus 330 ~~~~p~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG 407 (475)
...+| . + +++ .+++||+... ..+.|+++|++...=+.+... . .....++++.++.||+.--
T Consensus 201 ~~~~P--n---G-la~d~~~~~lY~aD~----~~~~I~~~~~dG~~~~~~~~~----~---~~~P~giav~~~~ly~td~ 263 (349)
T 3v64_C 201 HLFWP--N---G-LTIDYAGRRMYWVDA----KHHVIERANLDGSHRKAVISQ----G---LPHPFAITVFEDSLYWTDW 263 (349)
T ss_dssp SCSCE--E---E-EEEETTTTEEEEEET----TTTEEEEEETTSCSCEEEECS----S---CSSEEEEEEETTEEEEEET
T ss_pred CCCCc--c---e-EEEeCCCCEEEEEEC----CCCEEEEEeCCCCceEEEEeC----C---CCCceEEEEECCEEEEecC
Confidence 11111 1 1 344 3789999864 236899999875432322110 1 1233677778999999754
No 214
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=78.59 E-value=38 Score=30.61 Aligned_cols=62 Identities=5% Similarity=-0.011 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEe-CCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNE-ATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.+++.|+.+ ..+.+||..+.+-.. +.. .. ..-.+++.. ++++++.|+. -..+.+||..++
T Consensus 66 ~~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~-h~-~~v~~~~~~~~~~~l~sgs~---------D~~v~lWd~~~~ 129 (304)
T 2ynn_A 66 RKNWIIVGSDD-----FRIRVFNYNTGEKVVDFEA-HP-DYIRSIAVHPTKPYVLSGSD---------DLTVKLWNWENN 129 (304)
T ss_dssp GGTEEEEEETT-----SEEEEEETTTCCEEEEEEC-CS-SCEEEEEECSSSSEEEEEET---------TSCEEEEEGGGT
T ss_pred CCCEEEEECCC-----CEEEEEECCCCcEEEEEeC-CC-CcEEEEEEcCCCCEEEEECC---------CCeEEEEECCCC
Confidence 45556666643 367888887765322 111 00 111122222 4566666664 257888887664
No 215
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=78.56 E-value=36 Score=30.31 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=16.6
Q ss_pred EEECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 344 VVLDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 344 ~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
...++. ++.|+. ...+.+||..+.+
T Consensus 192 ~~~~~~-~~~~~~----dg~i~i~d~~~~~ 216 (313)
T 3odt_A 192 VVDDGH-FISCSN----DGLIKLVDMHTGD 216 (313)
T ss_dssp EEETTE-EEEEET----TSEEEEEETTTCC
T ss_pred EcCCCe-EEEccC----CCeEEEEECCchh
Confidence 345677 555653 3579999998764
No 216
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=78.38 E-value=21 Score=32.33 Aligned_cols=56 Identities=9% Similarity=-0.072 Sum_probs=32.1
Q ss_pred ceEEEEeCCCCcEEeCCCCCCcc-ceeeeEEE-CC-EEEEEeceecCCCCcccCCeEEEEeCCCCCeE
Q 011881 195 RCVRRYDPIANTWNEATSMSVGR-AYCKTGIL-ND-KLYVVGGVSRARGGLTPLQSAEVFDPTTDAWS 259 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R-~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~ 259 (475)
..+.++|+.+.+-...-.++... .-..++.. ++ .+|+.+.. ...+.+||+.+.+-.
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~---------~~~v~~~d~~~~~~~ 69 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK---------SESLVKIDLVTGETL 69 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT---------TTEEEEEETTTCCEE
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC---------CCeEEEEECCCCCeE
Confidence 47888998887654322222210 01223332 44 67887642 257999999887643
No 217
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=77.99 E-value=43 Score=30.84 Aligned_cols=105 Identities=12% Similarity=0.057 Sum_probs=56.0
Q ss_pred CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCC
Q 011881 226 NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSW 304 (475)
Q Consensus 226 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~ 304 (475)
++++++.|+. ...+.+||..+.+-..+........- .+++ .-++.+++.|+.++
T Consensus 138 ~~~~l~s~s~---------dg~i~~wd~~~~~~~~~~~~~~~~~i---------------~~~~~~pdg~~lasg~~dg- 192 (343)
T 3lrv_A 138 NTEYFIWADN---------RGTIGFQSYEDDSQYIVHSAKSDVEY---------------SSGVLHKDSLLLALYSPDG- 192 (343)
T ss_dssp -CCEEEEEET---------TCCEEEEESSSSCEEEEECCCSSCCC---------------CEEEECTTSCEEEEECTTS-
T ss_pred CCCEEEEEeC---------CCcEEEEECCCCcEEEEEecCCCCce---------------EEEEECCCCCEEEEEcCCC-
Confidence 4567777764 25788999988765433211111000 2222 34677777777554
Q ss_pred CceeccceEEEeCCCCceE--EcCCCCCCCCCCccCCCeEEEE-ECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 305 PFFVDVGGEIYDPDTNSWV--EMPIGMGEGWPARQAGTKLSVV-LDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 305 ~~~~~~~~~~yd~~~~~W~--~~~~~~~~~~p~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
...+||..+.+-. .+.. . .......++. -++..++.|+. +.|.+||+.+.+
T Consensus 193 ------~i~iwd~~~~~~~~~~~~~-~------h~~~v~~l~fs~~g~~l~s~~~-----~~v~iwd~~~~~ 246 (343)
T 3lrv_A 193 ------ILDVYNLSSPDQASSRFPV-D------EEAKIKEVKFADNGYWMVVECD-----QTVVCFDLRKDV 246 (343)
T ss_dssp ------CEEEEESSCTTSCCEECCC-C------TTSCEEEEEECTTSSEEEEEES-----SBEEEEETTSST
T ss_pred ------EEEEEECCCCCCCccEEec-c------CCCCEEEEEEeCCCCEEEEEeC-----CeEEEEEcCCCC
Confidence 2378999877643 2221 0 0111111222 35666666662 279999987753
No 218
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=77.83 E-value=69 Score=33.15 Aligned_cols=57 Identities=11% Similarity=-0.001 Sum_probs=33.8
Q ss_pred ceEEEEeCCCC---cEEeCCCCCCccceeeeEE-ECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCC
Q 011881 195 RCVRRYDPIAN---TWNEATSMSVGRAYCKTGI-LNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPS 263 (475)
Q Consensus 195 ~~~~~yd~~t~---~W~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 263 (475)
..++++|..+. +-+.+..... .-...+. -+++..+++. + ..++++|..+++...+..
T Consensus 129 ~~i~~~d~~~~~~~~~~~l~~~~~--~~~~~~~SPDG~~la~~~-----~-----~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 129 GELYLYDLKQEGKAAVRQLTHGEG--FATDAKLSPKGGFVSFIR-----G-----RNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp TEEEEEESSSCSTTSCCBCCCSSS--CEEEEEECTTSSEEEEEE-----T-----TEEEEEETTTTEEEECCC
T ss_pred CcEEEEECCCCCcceEEEcccCCc--ccccccCCCCCCEEEEEe-----C-----CcEEEEecCCCCEEEecc
Confidence 68999999887 5544433211 1111222 2566555543 1 379999999887776643
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=77.73 E-value=19 Score=32.78 Aligned_cols=108 Identities=11% Similarity=-0.012 Sum_probs=58.9
Q ss_pred CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCC
Q 011881 226 NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSW 304 (475)
Q Consensus 226 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~ 304 (475)
++.||++.-. ...+++||+.++.-.... .+. .. .+++ .-+|++|+..+
T Consensus 24 ~~~l~~~d~~---------~~~i~~~d~~~~~~~~~~-~~~-~~----------------~~i~~~~dG~l~v~~~---- 72 (297)
T 3g4e_A 24 SNSLLFVDIP---------AKKVCRWDSFTKQVQRVT-MDA-PV----------------SSVALRQSGGYVATIG---- 72 (297)
T ss_dssp TTEEEEEETT---------TTEEEEEETTTCCEEEEE-CSS-CE----------------EEEEEBTTSSEEEEET----
T ss_pred CCEEEEEECC---------CCEEEEEECCCCcEEEEe-CCC-ce----------------EEEEECCCCCEEEEEC----
Confidence 4688887642 368999999987654432 111 11 2223 33677777431
Q ss_pred CceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCC-------CCCCCeEEEEeCCC
Q 011881 305 PFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSS-------SLNSAKIKVYDQKE 371 (475)
Q Consensus 305 ~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~-------~~~~~~v~~yd~~~ 371 (475)
.+..+||+++++++.+.... ...+..+. ...++.-+|+||+..-.. ......++.+|+..
T Consensus 73 -----~~l~~~d~~~g~~~~~~~~~-~~~~~~~~-~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g 139 (297)
T 3g4e_A 73 -----TKFCALNWKEQSAVVLATVD-NDKKNNRF-NDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH 139 (297)
T ss_dssp -----TEEEEEETTTTEEEEEEECC-TTCSSEEE-EEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred -----CeEEEEECCCCcEEEEEecC-CCCCCCCC-CCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence 34589999999988765411 11111111 111223368888853111 01235788998863
No 220
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=77.59 E-value=70 Score=33.09 Aligned_cols=209 Identities=12% Similarity=0.089 Sum_probs=96.6
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCC----cccCCeEEEEeC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGG----LTPLQSAEVFDP 253 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~----~~~~~~~~~yd~ 253 (475)
+|+..++.-.........++++|+.+++......++.... ...+.. +++.++++.......+ ......+++++.
T Consensus 131 DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l 209 (695)
T 2bkl_A 131 DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTL 209 (695)
T ss_dssp TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEET
T ss_pred CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEEC
Confidence 5554444322222224589999999988651112221111 223332 6666666554321000 012456889998
Q ss_pred CCCCeE--ecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCC
Q 011881 254 TTDAWS--EVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGE 331 (475)
Q Consensus 254 ~t~~W~--~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 331 (475)
.++.-. .+-..+..... .......-+|+..++...... .. ...+.+|..+..|..+.....
T Consensus 210 ~t~~~~~~lv~~~~~~~~~-------------~~~~~~SpDG~~l~~~~~~~~-~~--~~l~~~~~~~~~~~~l~~~~~- 272 (695)
T 2bkl_A 210 GTEPSKDTVVHERTGDPTT-------------FLQSDLSRDGKYLFVYILRGW-SE--NDVYWKRPGEKDFRLLVKGVG- 272 (695)
T ss_dssp TSCGGGCEEEECCCCCTTC-------------EEEEEECTTSCCEEEEEEETT-TE--EEEEEECTTCSSCEEEEECSS-
T ss_pred CCCchhceEEEecCCCCEE-------------EEEEEECCCCCEEEEEEeCCC-Cc--eEEEEEcCCCCceEEeecCCC-
Confidence 877532 22211111010 001222335554333332210 00 122556777778887764211
Q ss_pred CCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc---EEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeec
Q 011881 332 GWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT---WKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKD 408 (475)
Q Consensus 332 ~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~---W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~ 408 (475)
.....+..+|.+|+....+ .....|+.+|+++.. |+.+....+ ......+...+++|++....
T Consensus 273 -------~~~~~~~~~g~l~~~s~~~-~~~~~l~~~d~~~~~~~~~~~l~~~~~------~~~l~~~~~~~~~lv~~~~~ 338 (695)
T 2bkl_A 273 -------AKYEVHAWKDRFYVLTDEG-APRQRVFEVDPAKPARASWKEIVPEDS------SASLLSVSIVGGHLSLEYLK 338 (695)
T ss_dssp -------CCEEEEEETTEEEEEECTT-CTTCEEEEEBTTBCSGGGCEEEECCCS------SCEEEEEEEETTEEEEEEEE
T ss_pred -------ceEEEEecCCcEEEEECCC-CCCCEEEEEeCCCCCccCCeEEecCCC------CCeEEEEEEECCEEEEEEEE
Confidence 1111233566666654322 223689999987654 887642111 11112334457887777654
Q ss_pred CCCCeeEEEecC
Q 011881 409 ASRNISILRADP 420 (475)
Q Consensus 409 ~~~~~~v~~~d~ 420 (475)
... ..+..+|+
T Consensus 339 dg~-~~l~~~~~ 349 (695)
T 2bkl_A 339 DAT-SEVRVATL 349 (695)
T ss_dssp TTE-EEEEEEET
T ss_pred CCE-EEEEEEeC
Confidence 332 23444443
No 221
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=77.31 E-value=43 Score=30.48 Aligned_cols=66 Identities=11% Similarity=-0.056 Sum_probs=41.0
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
+++||+...... ...+++||+.+.+.+.+...+..+.....+.. ++.+|+.-- ....++++|+.+.
T Consensus 82 dG~l~vad~~~~---~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~---------~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 82 NGDLVATGWNAD---SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADS---------YRGAIWLIDVVQP 148 (306)
T ss_dssp TSCEEEEEECTT---SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEET---------TTTEEEEEETTTT
T ss_pred CCcEEEEeccCC---cceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEEC---------CCCeEEEEeCCCC
Confidence 567888753211 13588899988888776655544443344333 567777532 1358899998764
No 222
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=77.25 E-value=23 Score=33.19 Aligned_cols=204 Identities=13% Similarity=-0.055 Sum_probs=90.0
Q ss_pred cceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCC
Q 011881 194 MRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGL 272 (475)
Q Consensus 194 ~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 272 (475)
...++++|+.+.+-+.+..-+. ...+....- +++.+++.... ........++.+|..+...+.+.........
T Consensus 167 ~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~sp~dg~~l~~~~~~---~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~-- 240 (388)
T 3pe7_A 167 CCRLMRVDLKTGESTVILQENQ-WLGHPIYRPYDDSTVAFCHEG---PHDLVDARMWLINEDGTNMRKVKTHAEGESC-- 240 (388)
T ss_dssp CEEEEEEETTTCCEEEEEEESS-CEEEEEEETTEEEEEEEEECS---CTTTSSCSEEEEETTSCCCEESCCCCTTEEE--
T ss_pred cceEEEEECCCCceEEeecCCc-cccccEECCCCCCEEEEEEec---CCCCCcceEEEEeCCCCceEEeeeCCCCccc--
Confidence 3689999999987666543221 122222222 45544443321 1111245899999988777766543211110
Q ss_pred CccccccccccceeeEEEeCCE-EEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCC--CCCccCCCeEEEEECCe
Q 011881 273 PNAFFADMLKPIATGMTSYMGR-LCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEG--WPARQAGTKLSVVLDGE 349 (475)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~--~p~~~~~~~~~~~~~~~ 349 (475)
.+....-+|+ |+......+... ...+++|+.+++-+.+.. .... ......+. ...-+|+
T Consensus 241 ------------~~~~~spdg~~l~~~~~~~~~~~---~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~~~--~~spdg~ 302 (388)
T 3pe7_A 241 ------------THEFWVPDGSALVYVSYLKGSPD---RFIYSADPETLENRQLTS-MPACSHLMSNYDGS--LMVGDGS 302 (388)
T ss_dssp ------------EEEEECTTSSCEEEEEEETTCCC---EEEEEECTTTCCEEEEEE-ECCEEEEEECTTSS--EEEEEEC
T ss_pred ------------ccceECCCCCEEEEEecCCCCCc---ceEEEEecCCCceEEEEc-CCCceeeeecCCCC--eEccCCC
Confidence 0112233555 433221111100 114789999888666533 1100 00000111 2333443
Q ss_pred -EEEEc----CCCCCCCCeEEEEeCCCCcEEEcCCcCc-cccCC---CCCCCeEEEEeCCeEEEEeecCCCCeeEEEecC
Q 011881 350 -LYAFD----PSSSLNSAKIKVYDQKEDTWKVVIGKVP-IRDFA---DSESPYLLSAFHGKLHVLTKDASRNISILRADP 420 (475)
Q Consensus 350 -lyv~G----G~~~~~~~~v~~yd~~~~~W~~v~~~~p-~~~~~---~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~ 420 (475)
|++.. |........|+.+|+++++-+.+..... ...+. ..........-+|+.+++.........+..+|+
T Consensus 303 ~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 303 DAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp CC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred cceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 33321 1111233589999999987776642110 00000 001111222346766666655444444555554
Q ss_pred C
Q 011881 421 R 421 (475)
Q Consensus 421 ~ 421 (475)
.
T Consensus 383 ~ 383 (388)
T 3pe7_A 383 P 383 (388)
T ss_dssp C
T ss_pred C
Confidence 4
No 223
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=76.99 E-value=8.6 Score=33.20 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 347 DGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 347 ~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
++++|++-| +..++||..+++
T Consensus 109 ~g~~yfFkG------~~yw~yd~~~~~ 129 (196)
T 3c7x_A 109 NGKTYFFRG------NKYYRFNEELRA 129 (196)
T ss_dssp TTEEEEEET------TEEEEEETTTTE
T ss_pred CCEEEEEEC------CEEEEEeCCccc
Confidence 689999977 579999988763
No 224
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=76.75 E-value=55 Score=31.45 Aligned_cols=163 Identities=13% Similarity=0.067 Sum_probs=78.9
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCc-EEeCCCCC--CccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANT-WNEATSMS--VGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDP 253 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~p--~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 253 (475)
++.||+...... ..++++|+.+.. ...+.... ....-+.+++. ++.||+... ...+++||+
T Consensus 182 g~~l~~~d~~~~----~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~----------~~~I~~~d~ 247 (409)
T 3hrp_A 182 KQRVYSIGWEGT----HTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS----------NKNFGRFNV 247 (409)
T ss_dssp SSEEEEEBSSTT----CEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT----------TCEEEEEET
T ss_pred CCcEEEEecCCC----ceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC----------CCcEEEEEC
Confidence 456777653211 278899887543 23331111 11122334443 689999422 247999999
Q ss_pred CCCCeEecCCCCcc-ccCCCCcccccccccccee-eEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCC
Q 011881 254 TTDAWSEVPSMPFS-RAQGLPNAFFADMLKPIAT-GMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGM 329 (475)
Q Consensus 254 ~t~~W~~~~~~p~~-r~~~~~~~~~~~~~~~~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 329 (475)
.+..-..+...... .....| . .++.. ++.||+..... ....+||+....-.......
T Consensus 248 ~~~~~~~~~~~~~~g~~~~~P------------~~~ia~~p~~g~lyv~d~~~-------~~I~~~~~~g~~~~~~g~~~ 308 (409)
T 3hrp_A 248 KTQEVTLIKQLELSGSLGTNP------------GPYLIYYFVDSNFYMSDQNL-------SSVYKITPDGECEWFCGSAT 308 (409)
T ss_dssp TTCCEEEEEECCCCSCCCCSS------------CCEEEEETTTTEEEEEETTT-------TEEEEECTTCCEEEEEECTT
T ss_pred CCCCEEEEecccccCCCCCCc------------cccEEEeCCCCEEEEEeCCC-------CEEEEEecCCCEEEEEeCCC
Confidence 98875544211100 000000 1 33433 58899864322 12377887654222222100
Q ss_pred CCCCCC-----ccCCCeE-EEE-ECCeEEEEcC-CCCCCCCeEEEEeCCCCcEEEcC
Q 011881 330 GEGWPA-----RQAGTKL-SVV-LDGELYAFDP-SSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 330 ~~~~p~-----~~~~~~~-~~~-~~~~lyv~GG-~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
..+... .+..... +++ -+|.||+... . .+.|.++|+.+.+-..+.
T Consensus 309 ~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~----~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 309 QKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK----GYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp CCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT----TCEEEEEETTTTEEEEEE
T ss_pred CCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC----CCEEEEEECCCCEEEEEe
Confidence 000000 0011111 232 3578999864 2 258999997777666553
No 225
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=75.82 E-value=43 Score=31.93 Aligned_cols=66 Identities=11% Similarity=-0.005 Sum_probs=38.4
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.+++.|+.+ ..+.+||+.+.+-...-..+.......++.+ ++++++.|+. ...+.+||..+.
T Consensus 181 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---------dg~i~iwd~~~~ 246 (437)
T 3gre_A 181 EKSLLVALTNL-----SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT---------RGIIDIWDIRFN 246 (437)
T ss_dssp SCEEEEEEETT-----SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET---------TSCEEEEETTTT
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC---------CCeEEEEEcCCc
Confidence 46677777654 3788999987664322111101112223333 5677777764 257899999886
Q ss_pred Ce
Q 011881 257 AW 258 (475)
Q Consensus 257 ~W 258 (475)
+.
T Consensus 247 ~~ 248 (437)
T 3gre_A 247 VL 248 (437)
T ss_dssp EE
T ss_pred cE
Confidence 54
No 226
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=75.66 E-value=35 Score=34.35 Aligned_cols=178 Identities=13% Similarity=-0.012 Sum_probs=90.6
Q ss_pred EEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccc
Q 011881 197 VRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAF 276 (475)
Q Consensus 197 ~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 276 (475)
+.+||+.+.+-+.+...+. .. ....-+|+..++++..... ...++++|+.+++++.+..-+....
T Consensus 134 ~~l~d~~~g~~~~l~~~~~--~~-~~~spDG~~la~~~~~~~~-----~~~i~~~d~~~g~~~~l~~~~~~~~------- 198 (582)
T 3o4h_A 134 VALYALDGGGLRELARLPG--FG-FVSDIRGDLIAGLGFFGGG-----RVSLFTSNLSSGGLRVFDSGEGSFS------- 198 (582)
T ss_dssp EEEEEEETTEEEEEEEESS--CE-EEEEEETTEEEEEEEEETT-----EEEEEEEETTTCCCEEECCSSCEEE-------
T ss_pred ceEEEccCCcEEEeecCCC--ce-EEECCCCCEEEEEEEcCCC-----CeEEEEEcCCCCCceEeecCCCccc-------
Confidence 3477888887776654332 11 1222366666655543211 2469999999999887754322111
Q ss_pred cccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCe---EEEEECCeEEEE
Q 011881 277 FADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTK---LSVVLDGELYAF 353 (475)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~---~~~~~~~~lyv~ 353 (475)
.....-+|+.++.+..++. ...+.+|+++++...+.. ... ......+.. ....-+|++++.
T Consensus 199 ---------~~~~SpDG~~l~~~~~~~~-----~~i~~~d~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~spdg~~~~~ 262 (582)
T 3o4h_A 199 ---------SASISPGMKVTAGLETARE-----ARLVTVDPRDGSVEDLEL-PSK-DFSSYRPTAITWLGYLPDGRLAVV 262 (582)
T ss_dssp ---------EEEECTTSCEEEEEECSSC-----EEEEEECTTTCCEEECCC-SCS-HHHHHCCSEEEEEEECTTSCEEEE
T ss_pred ---------cceECCCCCEEEEccCCCe-----eEEEEEcCCCCcEEEccC-CCc-ChhhhhhccccceeEcCCCcEEEE
Confidence 2223345654443332221 123789999988873322 110 000000000 013346677776
Q ss_pred cCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCC
Q 011881 354 DPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPR 421 (475)
Q Consensus 354 GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~ 421 (475)
+..+ ..+.+|+. ++.... + . .....+...++++++.+........+..+|..
T Consensus 263 ~~~~----g~~~l~~~--g~~~~~----~-----~-~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 263 ARRE----GRSAVFID--GERVEA----P-----Q-GNHGRVVLWRGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEET----TEEEEEET--TEEECC----C-----S-SEEEEEEEETTEEEEEEEETTEEEEEEEETTC
T ss_pred EEcC----CcEEEEEE--CCeecc----C-----C-CceEEEEecCCEEEEEEcCCCCCCeEEEEcCC
Confidence 6432 36777777 443321 1 1 11123333388888877766555556677665
No 227
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=75.40 E-value=47 Score=30.06 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=35.4
Q ss_pred CCE-EEEEcCCCCCCCcceEEEEeC-CCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 179 DGC-LYVLGGFSRTSAMRCVRRYDP-IANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 179 ~~~-lyv~GG~~~~~~~~~~~~yd~-~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
++. +++.|+.+ ..+.+||. .+.+...+...+....-.++....+.+++.|+. ...+.+||..+
T Consensus 67 ~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~---------d~~i~iwd~~~ 131 (342)
T 1yfq_A 67 NTDLQIYVGTVQ-----GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW---------DGLIEVIDPRN 131 (342)
T ss_dssp SSSEEEEEEETT-----SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEET---------TSEEEEECHHH
T ss_pred CCCcEEEEEcCC-----CeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcC---------CCeEEEEcccc
Confidence 556 66666654 36889999 888776664411111111222232555556653 25788888764
No 228
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=75.15 E-value=49 Score=30.14 Aligned_cols=142 Identities=8% Similarity=0.060 Sum_probs=71.0
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
+.+++.|+.++ .+.+||..+........+.........+.+ +++.++.|+. ...+.+||..+.+
T Consensus 54 g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---------dg~v~iwd~~~~~ 119 (368)
T 3mmy_A 54 GNFLIAGSWAN-----DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC---------DKTAKMWDLSSNQ 119 (368)
T ss_dssp SEEEEEEETTS-----EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET---------TSEEEEEETTTTE
T ss_pred ceEEEEECCCC-----cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC---------CCcEEEEEcCCCC
Confidence 47777777543 577888876332221111111111122222 5666666663 2578999999887
Q ss_pred eEecCCCCccccCCCCccccccccccceeeEE---EeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCC
Q 011881 258 WSEVPSMPFSRAQGLPNAFFADMLKPIATGMT---SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWP 334 (475)
Q Consensus 258 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p 334 (475)
-..+.....+. .++. .-++.+++.|+.++ ...+||..+++-...-. . +
T Consensus 120 ~~~~~~~~~~v-----------------~~~~~~~~~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~-~----~ 170 (368)
T 3mmy_A 120 AIQIAQHDAPV-----------------KTIHWIKAPNYSCVMTGSWDK-------TLKFWDTRSSNPMMVLQ-L----P 170 (368)
T ss_dssp EEEEEECSSCE-----------------EEEEEEECSSCEEEEEEETTS-------EEEEECSSCSSCSEEEE-C----S
T ss_pred ceeeccccCce-----------------EEEEEEeCCCCCEEEEccCCC-------cEEEEECCCCcEEEEEe-c----C
Confidence 55432211110 2222 23667777776543 23788887664322111 0 1
Q ss_pred CccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCC
Q 011881 335 ARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 335 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 372 (475)
. .........+.+++.+. .+.+.+||....
T Consensus 171 ~---~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~ 200 (368)
T 3mmy_A 171 E---RCYCADVIYPMAVVATA-----ERGLIVYQLENQ 200 (368)
T ss_dssp S---CEEEEEEETTEEEEEEG-----GGCEEEEECSSS
T ss_pred C---CceEEEecCCeeEEEeC-----CCcEEEEEeccc
Confidence 1 11113344555554443 246788887654
No 229
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=75.09 E-value=51 Score=30.29 Aligned_cols=112 Identities=8% Similarity=0.055 Sum_probs=61.2
Q ss_pred CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeE-EEeCCEEEEeccCCCC
Q 011881 226 NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGM-TSYMGRLCVPQSLYSW 304 (475)
Q Consensus 226 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~iyv~GG~~~~ 304 (475)
++.+|+++.. ...+++||+.+++.+.+. .+.. . .++ ..-+|++++...
T Consensus 60 ~~~l~~~d~~---------~~~i~~~d~~~~~~~~~~-~~~~-v----------------~~i~~~~dg~l~v~~~---- 108 (326)
T 2ghs_A 60 SGTAWWFNIL---------ERELHELHLASGRKTVHA-LPFM-G----------------SALAKISDSKQLIASD---- 108 (326)
T ss_dssp TTEEEEEEGG---------GTEEEEEETTTTEEEEEE-CSSC-E----------------EEEEEEETTEEEEEET----
T ss_pred CCEEEEEECC---------CCEEEEEECCCCcEEEEE-CCCc-c----------------eEEEEeCCCeEEEEEC----
Confidence 3688888643 257899999987655432 1211 1 222 345788887532
Q ss_pred CceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCC--CCCCCeEEEEeCCCCcEEEc
Q 011881 305 PFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSS--SLNSAKIKVYDQKEDTWKVV 377 (475)
Q Consensus 305 ~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~--~~~~~~v~~yd~~~~~W~~v 377 (475)
.+..+||+.+++.+.+.. .....+..+. ...++.-+|++|+..... ......++.|| +.+...+
T Consensus 109 -----~gl~~~d~~~g~~~~~~~-~~~~~~~~~~-~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 109 -----DGLFLRDTATGVLTLHAE-LESDLPGNRS-NDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp -----TEEEEEETTTCCEEEEEC-SSTTCTTEEE-EEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE
T ss_pred -----CCEEEEECCCCcEEEEee-CCCCCCCCCC-CCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe
Confidence 345899999999877643 1111111111 111223367888753211 11235799998 4555554
No 230
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=74.85 E-value=58 Score=32.72 Aligned_cols=67 Identities=12% Similarity=-0.040 Sum_probs=35.6
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCE-EEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDK-LYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
+..+|+... ....++++|..+.+-..+..++..+.-+..+.. +++ +|+.+.. .+.+.++|..++
T Consensus 291 ~~~~~vs~~-----~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~---------~~~v~v~D~~tg 356 (543)
T 1nir_A 291 HPEFIVNVK-----ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN---------SNKVAVIDSKDR 356 (543)
T ss_dssp SSEEEEEET-----TTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG---------GTEEEEEETTTT
T ss_pred CCEEEEEEC-----CCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC---------CCeEEEEECCCC
Confidence 445555432 235788898876532111112223333333433 444 6665432 368889999998
Q ss_pred CeE
Q 011881 257 AWS 259 (475)
Q Consensus 257 ~W~ 259 (475)
+-.
T Consensus 357 ~l~ 359 (543)
T 1nir_A 357 RLS 359 (543)
T ss_dssp EEE
T ss_pred eEE
Confidence 644
No 231
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=74.57 E-value=38 Score=30.95 Aligned_cols=107 Identities=13% Similarity=0.055 Sum_probs=55.5
Q ss_pred CEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEe--CCEEEEeccCCCC
Q 011881 227 DKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSW 304 (475)
Q Consensus 227 ~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~ 304 (475)
+.+++.|+. ...+.+||..+.+-... +...... ..++... ++.+++.|+.++
T Consensus 85 ~~~l~~~~~---------dg~i~v~d~~~~~~~~~--~~~~~~~--------------i~~~~~~~~~~~~l~s~~~dg- 138 (366)
T 3k26_A 85 HPLLAVAGS---------RGIIRIINPITMQCIKH--YVGHGNA--------------INELKFHPRDPNLLLSVSKDH- 138 (366)
T ss_dssp CEEEEEEET---------TCEEEEECTTTCCEEEE--EESCCSC--------------EEEEEECSSCTTEEEEEETTS-
T ss_pred CCEEEEecC---------CCEEEEEEchhceEeee--ecCCCCc--------------EEEEEECCCCCCEEEEEeCCC-
Confidence 567777774 25789999887653221 1100111 0222322 566777776543
Q ss_pred CceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEE-ECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 305 PFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVV-LDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 305 ~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
...+||..+++-...-..... .......++. -++..++.|+.+ +.+.+||..+.+
T Consensus 139 ------~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~ 194 (366)
T 3k26_A 139 ------ALRLWNIQTDTLVAIFGGVEG----HRDEVLSADYDLLGEKIMSCGMD----HSLKLWRINSKR 194 (366)
T ss_dssp ------CEEEEETTTTEEEEEECSTTS----CSSCEEEEEECTTSSEEEEEETT----SCEEEEESCSHH
T ss_pred ------eEEEEEeecCeEEEEeccccc----ccCceeEEEECCCCCEEEEecCC----CCEEEEECCCCc
Confidence 237899887765433210000 1111111222 356677777643 579999988653
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=73.49 E-value=53 Score=29.70 Aligned_cols=139 Identities=14% Similarity=0.235 Sum_probs=72.8
Q ss_pred EeCCEEEEEcCCCCCCCcceEEEEeCC-CCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 177 AVDGCLYVLGGFSRTSAMRCVRRYDPI-ANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 177 ~~~~~lyv~GG~~~~~~~~~~~~yd~~-t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
..++.||+... ...++.||+. ...|+.-.+.+. ..+.+.. ++.||+... ...+..||+.
T Consensus 105 ~~~~~l~v~t~------~~~l~~~d~~g~~~~~~~~~~~~---~~~~~~~~~g~l~vgt~----------~~~l~~~d~~ 165 (330)
T 3hxj_A 105 IFEDILYVTSM------DGHLYAINTDGTEKWRFKTKKAI---YATPIVSEDGTIYVGSN----------DNYLYAINPD 165 (330)
T ss_dssp EETTEEEEECT------TSEEEEECTTSCEEEEEECSSCC---CSCCEECTTSCEEEECT----------TSEEEEECTT
T ss_pred EECCEEEEEec------CCEEEEEcCCCCEEEEEcCCCce---eeeeEEcCCCEEEEEcC----------CCEEEEECCC
Confidence 34888887532 2468899987 334765432211 1223344 677777431 2578999998
Q ss_pred CC-CeEecCCCCccccCCCCccccccccccceeeEEE-eCCEEEEeccCCCCCceeccceEEEeCCC-CceEEcCCCCCC
Q 011881 255 TD-AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-YMGRLCVPQSLYSWPFFVDVGGEIYDPDT-NSWVEMPIGMGE 331 (475)
Q Consensus 255 t~-~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~ 331 (475)
.. .|+.-.+ .... .+.+. .++.||+.. .+..+||... ..|+.... .
T Consensus 166 g~~~~~~~~~--~~~~----------------~~~~~d~~g~l~v~t----------~~l~~~d~~g~~~~~~~~~-~-- 214 (330)
T 3hxj_A 166 GTEKWRFKTN--DAIT----------------SAASIGKDGTIYFGS----------DKVYAINPDGTEKWNFYAG-Y-- 214 (330)
T ss_dssp SCEEEEEECS--SCCC----------------SCCEECTTCCEEEES----------SSEEEECTTSCEEEEECCS-S--
T ss_pred CCEeEEEecC--CCce----------------eeeEEcCCCEEEEEe----------CEEEEECCCCcEEEEEccC-C--
Confidence 22 2665322 1111 22333 477888743 1337888432 34765432 1
Q ss_pred CCCCccCCCeEEEEE-CCeEEEEcCCCCCCCCeEEEEeCCCCc-EEE
Q 011881 332 GWPARQAGTKLSVVL-DGELYAFDPSSSLNSAKIKVYDQKEDT-WKV 376 (475)
Q Consensus 332 ~~p~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~v~~yd~~~~~-W~~ 376 (475)
... .+ .+.. +|.||+... .+.+++||+.... |..
T Consensus 215 ----~~~-~~-~~~~~~g~l~v~t~-----~~gl~~~~~~g~~~~~~ 250 (330)
T 3hxj_A 215 ----WTV-TR-PAISEDGTIYVTSL-----DGHLYAINPDGTEKWRF 250 (330)
T ss_dssp ----CCC-SC-CEECTTSCEEEEET-----TTEEEEECTTSCEEEEE
T ss_pred ----cce-ec-eEECCCCeEEEEcC-----CCeEEEECCCCCEeEEe
Confidence 111 11 2333 557888642 2478888875544 543
No 233
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=73.12 E-value=54 Score=29.66 Aligned_cols=54 Identities=7% Similarity=0.039 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCC
Q 011881 347 DGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASR 411 (475)
Q Consensus 347 ~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~ 411 (475)
++++++.|+.+ ..|.+||..+.+-...- .. .......+++ .++++++.|+..+.
T Consensus 262 ~~~~l~~~~~d----g~i~vwd~~~~~~~~~~---~~---~h~~~v~~~~-~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 262 RHKFLYTAGSD----GIISCWNLQTRKKIKNF---AK---FNEDSVVKIA-CSDNILCLATSDDT 315 (342)
T ss_dssp TTCCEEEEETT----SCEEEEETTTTEEEEEC---CC---CSSSEEEEEE-ECSSEEEEEEECTH
T ss_pred CCCEEEEecCC----ceEEEEcCccHhHhhhh---hc---ccCCCceEec-CCCCeEEEEecCCc
Confidence 56666666643 57999999877643321 10 0011223444 78888888886654
No 234
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=72.21 E-value=58 Score=29.63 Aligned_cols=63 Identities=6% Similarity=0.084 Sum_probs=34.1
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
.++.+++.|+.+ ..+.+||..+.+-... +.......+.......+++.++ ...+.+||.....
T Consensus 139 ~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~ 201 (368)
T 3mmy_A 139 PNYSCVMTGSWD-----KTLKFWDTRSSNPMMV--LQLPERCYCADVIYPMAVVATA----------ERGLIVYQLENQP 201 (368)
T ss_dssp SSCEEEEEEETT-----SEEEEECSSCSSCSEE--EECSSCEEEEEEETTEEEEEEG----------GGCEEEEECSSSC
T ss_pred CCCCEEEEccCC-----CcEEEEECCCCcEEEE--EecCCCceEEEecCCeeEEEeC----------CCcEEEEEecccc
Confidence 356677777654 3688898877642221 1111222333444565555443 2467788877653
No 235
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=72.12 E-value=56 Score=29.45 Aligned_cols=148 Identities=12% Similarity=0.080 Sum_probs=69.5
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCCe
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAW 258 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 258 (475)
++.+++.|+.++ .+..++.......................-.+..++.|+. ...+.+||.....-
T Consensus 97 dg~~l~s~~~d~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---------d~~~~~~d~~~~~~ 162 (340)
T 4aow_A 97 DGQFALSGSWDG-----TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR---------DKTIKLWNTLGVCK 162 (340)
T ss_dssp TSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET---------TSCEEEECTTSCEE
T ss_pred CCCEEEEEcccc-----cceEEeecccceeeeecCCCCceeEEEEeecCccceeecC---------CCeEEEEEeCCCce
Confidence 556666666543 5667777766554433222222222222224555566653 14567777765432
Q ss_pred EecCCCCccccCCCCccccccccccceeeEEE-e--CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCC
Q 011881 259 SEVPSMPFSRAQGLPNAFFADMLKPIATGMTS-Y--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPA 335 (475)
Q Consensus 259 ~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~ 335 (475)
........ ... + ..+.. . .+.+++.|+.++ ...+||..+.+-...-...
T Consensus 163 ~~~~~~~~-~~~-------------v-~~~~~~~~~~~~~~~s~~~d~-------~i~i~d~~~~~~~~~~~~h------ 214 (340)
T 4aow_A 163 YTVQDESH-SEW-------------V-SCVRFSPNSSNPIIVSCGWDK-------LVKVWNLANCKLKTNHIGH------ 214 (340)
T ss_dssp EEECSSSC-SSC-------------E-EEEEECSCSSSCEEEEEETTS-------CEEEEETTTTEEEEEECCC------
T ss_pred EEEEeccc-cCc-------------c-cceEEccCCCCcEEEEEcCCC-------EEEEEECCCCceeeEecCC------
Confidence 22211110 000 0 11111 1 233555555443 2367888877654322101
Q ss_pred ccCCCeEEE-EECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 336 RQAGTKLSV-VLDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 336 ~~~~~~~~~-~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
. ....+++ ..++++++.|+.+ ..+.+||..+.+
T Consensus 215 ~-~~v~~~~~s~~~~~l~s~s~D----g~i~iwd~~~~~ 248 (340)
T 4aow_A 215 T-GYLNTVTVSPDGSLCASGGKD----GQAMLWDLNEGK 248 (340)
T ss_dssp S-SCEEEEEECTTSSEEEEEETT----CEEEEEETTTTE
T ss_pred C-CcEEEEEECCCCCEEEEEeCC----CeEEEEEeccCc
Confidence 0 1111122 2367777777743 578999988764
No 236
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=71.96 E-value=13 Score=32.86 Aligned_cols=62 Identities=8% Similarity=0.083 Sum_probs=36.8
Q ss_pred EeCCEEEEEcCCCCCCCcceEEEEe--CCC-------------CcEEeCCCCC-CccceeeeEEE--CCEEEEEeceecC
Q 011881 177 AVDGCLYVLGGFSRTSAMRCVRRYD--PIA-------------NTWNEATSMS-VGRAYCKTGIL--NDKLYVVGGVSRA 238 (475)
Q Consensus 177 ~~~~~lyv~GG~~~~~~~~~~~~yd--~~t-------------~~W~~~~~~p-~~R~~~~~~~~--~~~iyv~GG~~~~ 238 (475)
..++++|+|-| +.+|+|+ +.+ ..|.-++.-. ..... ++... ++++|+|-|
T Consensus 70 ~~~g~~~fFKg-------~~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~ID-AA~~~~~~~k~yfFkG---- 137 (227)
T 3lp9_A 70 TENNEAFIFYE-------NFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGID-AAYRSTRGKEVYLFKG---- 137 (227)
T ss_dssp CSTTEEEEEET-------TEEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCS-EEEECSSTTEEEEEET----
T ss_pred CCCCEEEEEeC-------CEEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCccc-EEEEECCCCEEEEEEC----
Confidence 46899999976 4788888 321 1133332110 11222 22222 689999987
Q ss_pred CCCcccCCeEEEEeCCCCC
Q 011881 239 RGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 239 ~~~~~~~~~~~~yd~~t~~ 257 (475)
+..++||..+++
T Consensus 138 -------~~yw~~d~~~~~ 149 (227)
T 3lp9_A 138 -------DQYARIDYGSNS 149 (227)
T ss_dssp -------TEEEEEETTTTE
T ss_pred -------CEEEEEeCCCcc
Confidence 478999987653
No 237
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=71.30 E-value=60 Score=29.45 Aligned_cols=68 Identities=12% Similarity=0.224 Sum_probs=37.8
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--C--CEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--N--DKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
+.+++.|+.++ .+.+||+.+.+|..+..+.........+.+ + +.+++.|+.+ ..+.+||..+
T Consensus 71 ~~~l~s~s~D~-----~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D---------~~i~lwd~~~ 136 (316)
T 3bg1_A 71 GNILASCSYDR-----KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD---------GAISLLTYTG 136 (316)
T ss_dssp SSCEEEEETTS-----CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS---------SCEEEEEECS
T ss_pred CCEEEEEECCC-----EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC---------CCEEEEecCC
Confidence 45666666543 577888888776554322211111222222 2 5667777642 4677888876
Q ss_pred C-CeEec
Q 011881 256 D-AWSEV 261 (475)
Q Consensus 256 ~-~W~~~ 261 (475)
. .|...
T Consensus 137 ~~~~~~~ 143 (316)
T 3bg1_A 137 EGQWEVK 143 (316)
T ss_dssp SSCEEEC
T ss_pred CCCccee
Confidence 5 57543
No 238
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=70.86 E-value=1e+02 Score=31.85 Aligned_cols=62 Identities=11% Similarity=0.050 Sum_probs=33.5
Q ss_pred eEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 312 GEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 312 ~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
...+|+.+++...+.......+-... ...+..-+|++++.+..++ ...++.+|.... ...+.
T Consensus 314 i~~~d~~~g~~~~~~~~~~~~~~~~~--~~~~~spdg~~~~~~~~~g--~~~l~~~~~~~~-~~~l~ 375 (741)
T 2ecf_A 314 LVEVTLASNQQRVLAHETSPTWVPLH--NSLRFLDDGSILWSSERTG--FQHLYRIDSKGK-AAALT 375 (741)
T ss_dssp EEEEETTTCCEEEEEEEECSSCCCCC--SCCEECTTSCEEEEECTTS--SCEEEEECSSSC-EEESC
T ss_pred EEEEECCCCceEEEEEcCCCCcCCcC--CceEECCCCeEEEEecCCC--ccEEEEEcCCCC-eeeee
Confidence 47889998887665321111000000 1113445777666665432 257888987766 66553
No 239
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=70.79 E-value=64 Score=29.54 Aligned_cols=187 Identities=14% Similarity=0.089 Sum_probs=95.5
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCC--cEEeCCCC------CCcccee-eeEEE--CCEEEEEeceecCCCCcccCCe
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIAN--TWNEATSM------SVGRAYC-KTGIL--NDKLYVVGGVSRARGGLTPLQS 247 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~------p~~R~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 247 (475)
++.||+.... ...+.+||+... .-..+... ......+ .+++. ++.|||..++. ...
T Consensus 101 ~g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~--------~~~ 167 (329)
T 3fvz_A 101 DGNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC--------NSR 167 (329)
T ss_dssp TSCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS--------CCE
T ss_pred CCCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC--------CCe
Confidence 6779987643 357899998765 22222211 1111122 33443 68999997521 367
Q ss_pred EEEEeCCCCCeEecCCC-------CccccCCCCccccccccccceeeEEEe-C-CEEEEeccCCCCCceeccceEEEeCC
Q 011881 248 AEVFDPTTDAWSEVPSM-------PFSRAQGLPNAFFADMLKPIATGMTSY-M-GRLCVPQSLYSWPFFVDVGGEIYDPD 318 (475)
Q Consensus 248 ~~~yd~~t~~W~~~~~~-------p~~r~~~~~~~~~~~~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~ 318 (475)
+.+||+....-..+... +..... ..++++- + +.|||....+ ..+.+||+.
T Consensus 168 I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~--------------p~gia~d~~~g~l~v~d~~~-------~~I~~~~~~ 226 (329)
T 3fvz_A 168 IVQFSPSGKFVTQWGEESSGSSPRPGQFSV--------------PHSLALVPHLDQLCVADREN-------GRIQCFKTD 226 (329)
T ss_dssp EEEECTTSCEEEEECEECCSSSCCTTEESC--------------EEEEEEETTTTEEEEEETTT-------TEEEEEETT
T ss_pred EEEEcCCCCEEEEeccCCCCCCCCCcccCC--------------CcEEEEECCCCEEEEEECCC-------CEEEEEECC
Confidence 89999654433333211 000000 1444543 4 8999975432 224889998
Q ss_pred CCceEEc-CCCCCCCCCCccCCCeEEEEECCeEEEEcCCCC---CCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeE
Q 011881 319 TNSWVEM-PIGMGEGWPARQAGTKLSVVLDGELYAFDPSSS---LNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYL 394 (475)
Q Consensus 319 ~~~W~~~-~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~---~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~ 394 (475)
+++.... ...... .....++...+.+|+..|... .....+.++|+.+.+....-...+ .......+
T Consensus 227 ~G~~~~~~~~~~~~------~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~----~~~~~p~~ 296 (329)
T 3fvz_A 227 TKEFVREIKHASFG------RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR----KHFDMPHD 296 (329)
T ss_dssp TCCEEEEECCTTTT------TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS----SCCSSEEE
T ss_pred CCcEEEEEeccccC------CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC----CccCCeeE
Confidence 7776542 211110 011113334466666666422 223589999988877655321100 11122344
Q ss_pred EEEe-CCeEEEEeecC
Q 011881 395 LSAF-HGKLHVLTKDA 409 (475)
Q Consensus 395 ~~~~-~~~l~v~GG~~ 409 (475)
++.- +|.|||.....
T Consensus 297 ia~~~dG~lyvad~~~ 312 (329)
T 3fvz_A 297 IVASEDGTVYIGDAHT 312 (329)
T ss_dssp EEECTTSEEEEEESSS
T ss_pred EEECCCCCEEEEECCC
Confidence 5543 66888876543
No 240
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=70.68 E-value=99 Score=31.99 Aligned_cols=72 Identities=17% Similarity=0.205 Sum_probs=42.0
Q ss_pred EECCeEEEEcCCCCCCCCeEEEEeCCCC--cEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCCC
Q 011881 345 VLDGELYAFDPSSSLNSAKIKVYDQKED--TWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPRD 422 (475)
Q Consensus 345 ~~~~~lyv~GG~~~~~~~~v~~yd~~~~--~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~~ 422 (475)
.-+++.+++.-......+.++.+|.++. .|+.+... ...........++++|+.......+..+...|+.+
T Consensus 242 SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~-------~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~ 314 (693)
T 3iuj_A 242 TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD-------LDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAAN 314 (693)
T ss_dssp CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS-------SSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC-------CCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 3456644443222222368999998765 68777421 11111123456889999887665566788888764
Q ss_pred C
Q 011881 423 H 423 (475)
Q Consensus 423 ~ 423 (475)
.
T Consensus 315 ~ 315 (693)
T 3iuj_A 315 P 315 (693)
T ss_dssp C
T ss_pred C
Confidence 3
No 241
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=68.92 E-value=94 Score=30.72 Aligned_cols=143 Identities=8% Similarity=0.094 Sum_probs=67.8
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++..++.|+.+ ..+.+||.....-..+..-. .....+.+ +++.++.|+. ...+.+||....
T Consensus 355 ~g~~l~~~~~d-----g~v~~~~~~~~~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~---------d~~v~~~~~~~~ 417 (577)
T 2ymu_A 355 DGQTIASASDD-----KTVKLWNRNGQLLQTLTGHS---SSVRGVAFSPDGQTIASASD---------DKTVKLWNRNGQ 417 (577)
T ss_dssp TSSEEEEEETT-----SEEEEEETTCCEEEEEECCS---SCEEEEEECTTSSCEEEEET---------TSEEEEECTTCC
T ss_pred CCCEEEEEeCC-----CEEEEEcCCCCEEEEecCCC---CCeEEEEECCCCCEEEEEeC---------CCEEEEEeCCCC
Confidence 55666666543 25677776544333332111 11122222 5666666663 246788885443
Q ss_pred CeEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCC
Q 011881 257 AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPA 335 (475)
Q Consensus 257 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~ 335 (475)
.-..+.... .. + .+++ .-++++.+.++.++ ....||.....-..+....
T Consensus 418 ~~~~~~~~~---~~-------------v-~~~~~s~d~~~l~~~~~d~-------~v~~w~~~~~~~~~~~~~~------ 467 (577)
T 2ymu_A 418 LLQTLTGHS---SS-------------V-WGVAFSPDDQTIASASDDK-------TVKLWNRNGQLLQTLTGHS------ 467 (577)
T ss_dssp EEEEEECCS---SC-------------E-EEEEECTTSSEEEEEETTS-------EEEEEETTSCEEEEEECCS------
T ss_pred EEEEecCCC---CC-------------e-EEEEECCCCCEEEEEcCCC-------EEEEEECCCCEEEEEcCCC------
Confidence 222221111 11 0 2222 23566666665443 2367786554444433210
Q ss_pred ccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 336 RQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 336 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
..-.+.+...++++++.++.+ ..|.+||...+.
T Consensus 468 -~~v~~~~~spd~~~las~~~d----~~i~iw~~~~~~ 500 (577)
T 2ymu_A 468 -SSVRGVAFSPDGQTIASASDD----KTVKLWNRNGQL 500 (577)
T ss_dssp -SCEEEEEECTTSCEEEEEETT----SEEEEEETTSCE
T ss_pred -CCEEEEEEcCCCCEEEEEeCC----CEEEEEcCCCCE
Confidence 001111223467787777643 578889865443
No 242
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=68.44 E-value=78 Score=29.60 Aligned_cols=154 Identities=14% Similarity=0.153 Sum_probs=74.1
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCc--EEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANT--WNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
++.+++.|+.++ .+.+||+.... -..+.. .......+.+ +++.++.|+.+ ..+.+||..
T Consensus 217 ~~~~l~sgs~D~-----~v~~wd~~~~~~~~~~~~~---h~~~v~~v~~~p~~~~l~s~s~D---------~~i~lwd~~ 279 (380)
T 3iz6_a 217 NANMFISGSCDT-----TVRLWDLRITSRAVRTYHG---HEGDINSVKFFPDGQRFGTGSDD---------GTCRLFDMR 279 (380)
T ss_dssp SCCEEEEEETTS-----CEEEEETTTTCCCCEEECC---CSSCCCEEEECTTSSEEEEECSS---------SCEEEEETT
T ss_pred CCCEEEEEECCC-----eEEEEECCCCCcceEEECC---cCCCeEEEEEecCCCeEEEEcCC---------CeEEEEECC
Confidence 567778887654 57778875321 111111 0111112222 56777777742 578899998
Q ss_pred CCCeEecCCCCccc-cCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEE-cCCCCCCC
Q 011881 255 TDAWSEVPSMPFSR-AQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE-MPIGMGEG 332 (475)
Q Consensus 255 t~~W~~~~~~p~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~ 332 (475)
++.-...-.....+ ....+ .+...+...++++.+.|+.++ ...+||..+.+-.. +.. ...
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~---------~v~~~~~s~~g~~l~~g~~dg-------~i~vwd~~~~~~~~~~~~-~~~- 341 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELP---------IVTSVAFSISGRLLFAGYSNG-------DCYVWDTLLAEMVLNLGT-LQN- 341 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSC---------SCSEEEECSSSSEEEEECTTS-------CEEEEETTTCCEEEEECC-SCS-
T ss_pred CCcEEEEecccccccccccC---------ceEEEEECCCCCEEEEEECCC-------CEEEEECCCCceEEEEec-ccC-
Confidence 87533221111000 00000 000222334677777666543 23788987766432 221 111
Q ss_pred CCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCC
Q 011881 333 WPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 333 ~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 372 (475)
.....-.+.+...++..++.|+.+ ..+.+||+...
T Consensus 342 -~h~~~v~~l~~s~dg~~l~sgs~D----~~i~iW~~~~~ 376 (380)
T 3iz6_a 342 -SHEGRISCLGLSSDGSALCTGSWD----KNLKIWAFSGH 376 (380)
T ss_dssp -SCCCCCCEEEECSSSSEEEEECTT----SCEEEEECCSS
T ss_pred -CCCCceEEEEECCCCCEEEEeeCC----CCEEEEecCCC
Confidence 001111121233467788888754 46777776543
No 243
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=67.95 E-value=57 Score=29.33 Aligned_cols=76 Identities=9% Similarity=0.037 Sum_probs=38.4
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCc----cceeeeEEE-CC-EEEEEeceecCCCCcc--cCCeEEE
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVG----RAYCKTGIL-ND-KLYVVGGVSRARGGLT--PLQSAEV 250 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~----R~~~~~~~~-~~-~iyv~GG~~~~~~~~~--~~~~~~~ 250 (475)
+..+|+.+.. ...+++||+.+.+-...-+.+.+ ..-..++.. ++ .||+............ ....+.+
T Consensus 45 g~~l~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v 119 (337)
T 1pby_B 45 GRIAYATVNK-----SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL 119 (337)
T ss_dssp SSEEEEEETT-----TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred CCEEEEEeCC-----CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEE
Confidence 3467777642 24799999988775432111110 011123332 34 7777642110000000 1368999
Q ss_pred EeCCCCCeE
Q 011881 251 FDPTTDAWS 259 (475)
Q Consensus 251 yd~~t~~W~ 259 (475)
||+.+.+..
T Consensus 120 ~d~~~~~~~ 128 (337)
T 1pby_B 120 YDAETLSRR 128 (337)
T ss_dssp EETTTTEEE
T ss_pred EECCCCcEE
Confidence 999887644
No 244
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=67.12 E-value=77 Score=29.03 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=39.6
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCC--ccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSV--GRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDP 253 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~--~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 253 (475)
-++.+|+... ..+++||+.+.+.+.+...+. +........+ ++++|+.. .... .......+++||
T Consensus 99 ~dg~l~v~~~-------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~-~~~~--~~~~~~~l~~~~- 167 (326)
T 2ghs_A 99 SDSKQLIASD-------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGT-MGRK--AETGAGSIYHVA- 167 (326)
T ss_dssp ETTEEEEEET-------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEE-EETT--CCTTCEEEEEEE-
T ss_pred CCCeEEEEEC-------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEe-CCCc--CCCCceEEEEEe-
Confidence 4778877641 359999999998877644321 1112222222 67887743 2110 111235788888
Q ss_pred CCCCeEec
Q 011881 254 TTDAWSEV 261 (475)
Q Consensus 254 ~t~~W~~~ 261 (475)
+.+.+.+
T Consensus 168 -~g~~~~~ 174 (326)
T 2ghs_A 168 -KGKVTKL 174 (326)
T ss_dssp -TTEEEEE
T ss_pred -CCcEEEe
Confidence 4555543
No 245
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=67.03 E-value=52 Score=34.41 Aligned_cols=149 Identities=11% Similarity=-0.003 Sum_probs=80.4
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCC--CCCccceeeeEE--ECCEEEEEeceecCCCCcccCCeEEEEeC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATS--MSVGRAYCKTGI--LNDKLYVVGGVSRARGGLTPLQSAEVFDP 253 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~--~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 253 (475)
.++.||+.-. ....++++|+....-+.+.. +..|+ .+++ .++.||+.--. ....++++++
T Consensus 463 ~~g~LY~tD~-----~~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~--------~~~~I~~~~~ 526 (699)
T 1n7d_A 463 IHSNIYWTDS-----VLGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG--------TPAKIKKGGL 526 (699)
T ss_dssp SSSBCEECCT-----TTSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS--------SSCCEEBCCS
T ss_pred eCCcEEEEec-----cCCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC--------CCCeEEEEeC
Confidence 4678888632 23568899988765554422 23332 2333 36788876410 1256788777
Q ss_pred CCCCeEecC--CCCccccCCCCccccccccccceeeEEE--eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCC
Q 011881 254 TTDAWSEVP--SMPFSRAQGLPNAFFADMLKPIATGMTS--YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGM 329 (475)
Q Consensus 254 ~t~~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 329 (475)
....-+.+. .+..| .++++ .+++||+.-... ..++++|+....-..+.. .
T Consensus 527 dG~~~~~l~~~~l~~P------------------nGlavd~~~~~LY~aD~~~-------~~I~~~d~dG~~~~~~~~-~ 580 (699)
T 1n7d_A 527 NGVDIYSLVTENIQWP------------------NGITLDLLSGRLYWVDSKL-------HSISSIDVNGGNRKTILE-D 580 (699)
T ss_dssp SSCCCCEESCSSCSSC------------------CCEEECTTTCCEEEEETTT-------TEEEEECSSSSCCEEECC-C
T ss_pred CCCCeeEEEeCCCCCc------------------cEEEEeccCCEEEEEecCC-------CeEEEEccCCCceEEEEe-c
Confidence 544332221 12111 23343 368899864321 124788886544444332 1
Q ss_pred CCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEE
Q 011881 330 GEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKV 376 (475)
Q Consensus 330 ~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 376 (475)
...++.+. + +++.++.||+... ..+.|.++|+.+.+-..
T Consensus 581 ~~~~~~P~-g---lavd~~~lywtd~----~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 581 EKRLAHPF-S---LAVFEDKVFWTDI----INEAIFSANRLTGSDVN 619 (699)
T ss_dssp SSSCSSCC-C---CEEETTEEEEECS----TTTCEEEEETTTEEEEE
T ss_pred CCcCCCce-E---eEEECCEEEEEeC----CCCeEEEEEccCCCceE
Confidence 11112221 1 5667889999864 23689999987665443
No 246
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=66.91 E-value=1.3e+02 Score=31.78 Aligned_cols=145 Identities=11% Similarity=-0.002 Sum_probs=81.4
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCC--CCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEAT--SMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDP 253 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 253 (475)
.++.||+.-. ....|+++|+....-+.+. .+..|+ ++++. ++.||+.--. ....++++++
T Consensus 481 ~~~~LY~tD~-----~~~~I~v~~ldG~~~~~l~~~~l~~P~---gIaVDp~~g~LYwtD~g--------~~~~I~~~~~ 544 (791)
T 3m0c_C 481 IHSNIYWTDS-----VLGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWG--------TPAKIKKGGL 544 (791)
T ss_dssp TTTEEEEEET-----TTTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECS--------SSCEEEEEET
T ss_pred cCCcEEEEec-----CCCeEEEEeCCCCeEEEEEeCCCCCcc---eEEEecCCCCEEEecCC--------CCCeEEEEec
Confidence 4678998743 2457899998876655553 333333 34443 6899997410 1257889888
Q ss_pred CCCCeEecC--CCCccccCCCCccccccccccceeeEEE--eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCC
Q 011881 254 TTDAWSEVP--SMPFSRAQGLPNAFFADMLKPIATGMTS--YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGM 329 (475)
Q Consensus 254 ~t~~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 329 (475)
....=+.+. .+..| .++++ .+++||+.-... ..++++|+....=..+.. .
T Consensus 545 dG~~~~~lv~~~l~~P------------------~GLavD~~~~~LYwaD~~~-------~~I~~~d~dG~~~~~v~~-~ 598 (791)
T 3m0c_C 545 NGVDIYSLVTENIQWP------------------NGITLDLLSGRLYWVDSKL-------HSISSIDVNGGNRKTILE-D 598 (791)
T ss_dssp TSCCEEEEECSSCSCE------------------EEEEEETTTTEEEEEETTT-------TEEEEEETTSCSCEEEEE-C
T ss_pred CCCceEEEEeCCCCCc------------------eEEEEecCCCeEEEEeCCC-------CcEEEEecCCCceEEEec-C
Confidence 755433332 22222 33443 478999964321 124788886543333321 1
Q ss_pred CCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCC
Q 011881 330 GEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 330 ~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 372 (475)
...++.+. .+++.+++||+..- ..+.|+++|..+.
T Consensus 599 ~~~l~~P~----glav~~~~lYwtD~----~~~~I~~~dk~tG 633 (791)
T 3m0c_C 599 EKRLAHPF----SLAVFEDKVFWTDI----INEAIFSANRLTG 633 (791)
T ss_dssp TTTTSSEE----EEEEETTEEEEEET----TTTEEEEEETTTC
T ss_pred CCccCCCC----EEEEeCCEEEEEEC----CCCEEEEEeCCCC
Confidence 11122221 26678999999864 2357888875443
No 247
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=66.68 E-value=96 Score=31.85 Aligned_cols=73 Identities=5% Similarity=-0.240 Sum_probs=38.9
Q ss_pred CCEEEEEcCCCCC----CCcceEEEEeCCCCcEEeCCCCCCcc--ceeeeEEECCEEEEEeceecCCCCcccCCeEEEEe
Q 011881 179 DGCLYVLGGFSRT----SAMRCVRRYDPIANTWNEATSMSVGR--AYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFD 252 (475)
Q Consensus 179 ~~~lyv~GG~~~~----~~~~~~~~yd~~t~~W~~~~~~p~~R--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd 252 (475)
+++..+++..+.. .....++++|..+.+-+.+....... .......-+++..+++.. ..++++|
T Consensus 71 Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~----------~~i~~~~ 140 (723)
T 1xfd_A 71 DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE----------NNIYYCA 140 (723)
T ss_dssp TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET----------TEEEEES
T ss_pred CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC----------CeEEEEE
Confidence 5554455433221 22468999999988776665432211 111111225555555431 3688888
Q ss_pred CCCCCeEec
Q 011881 253 PTTDAWSEV 261 (475)
Q Consensus 253 ~~t~~W~~~ 261 (475)
..++.-..+
T Consensus 141 ~~~g~~~~~ 149 (723)
T 1xfd_A 141 HVGKQAIRV 149 (723)
T ss_dssp SSSSCCEEE
T ss_pred CCCCceEEE
Confidence 877765554
No 248
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=66.52 E-value=1.2e+02 Score=31.10 Aligned_cols=150 Identities=11% Similarity=0.047 Sum_probs=71.7
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEE-ECCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGI-LNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
++.+++.|+.+ ..+.+||..+.+-...-.-.... -.+++. -+++.++.|+. -..+.+||.....
T Consensus 441 ~g~~l~sgs~D-----g~v~vwd~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~s~---------D~~i~iwd~~~~~ 505 (694)
T 3dm0_A 441 DGQFALSGSWD-----GELRLWDLAAGVSTRRFVGHTKD-VLSVAFSLDNRQIVSASR---------DRTIKLWNTLGEC 505 (694)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSC-EEEEEECTTSSCEEEEET---------TSCEEEECTTSCE
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCcceeEEeCCCCC-EEEEEEeCCCCEEEEEeC---------CCEEEEEECCCCc
Confidence 56666777654 36888888776533211001111 111222 25666666664 2567888876543
Q ss_pred eEecCCCCccccCCCCccccccccccceeeEEEe-CC--EEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCC
Q 011881 258 WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY-MG--RLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWP 334 (475)
Q Consensus 258 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~--~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p 334 (475)
=..+.......... ..++... ++ .+++.|+.++ ...+||..+.+-...-. .
T Consensus 506 ~~~~~~~~~~h~~~-------------v~~~~~~~~~~~~~l~s~s~d~-------~v~vwd~~~~~~~~~~~-~----- 559 (694)
T 3dm0_A 506 KYTISEGGEGHRDW-------------VSCVRFSPNTLQPTIVSASWDK-------TVKVWNLSNCKLRSTLA-G----- 559 (694)
T ss_dssp EEEECSSTTSCSSC-------------EEEEEECSCSSSCEEEEEETTS-------CEEEEETTTCCEEEEEC-C-----
T ss_pred ceeeccCCCCCCCc-------------EEEEEEeCCCCcceEEEEeCCC-------eEEEEECCCCcEEEEEc-C-----
Confidence 22221111111110 0222222 22 3455555443 23788988765433211 0
Q ss_pred CccCCCeEEE-EECCeEEEEcCCCCCCCCeEEEEeCCCCcE
Q 011881 335 ARQAGTKLSV-VLDGELYAFDPSSSLNSAKIKVYDQKEDTW 374 (475)
Q Consensus 335 ~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W 374 (475)
.......++ ..++++++.|+.+ ..|.+||..+.+-
T Consensus 560 -h~~~v~~v~~spdg~~l~sg~~D----g~i~iwd~~~~~~ 595 (694)
T 3dm0_A 560 -HTGYVSTVAVSPDGSLCASGGKD----GVVLLWDLAEGKK 595 (694)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETT----SBCEEEETTTTEE
T ss_pred -CCCCEEEEEEeCCCCEEEEEeCC----CeEEEEECCCCce
Confidence 111111122 2367788877743 5788999987753
No 249
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=65.77 E-value=1.2e+02 Score=30.99 Aligned_cols=169 Identities=12% Similarity=0.084 Sum_probs=96.3
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEE--ECCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGI--LNDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
.++.||+.--. ...++++++.....+.+...... .-..+++ .+++||+.-.. ...++++|+..
T Consensus 47 ~~~~lywtD~~-----~~~I~r~~~~g~~~~~v~~~g~~-~P~GlAvD~~~~~LY~tD~~---------~~~I~v~~~dG 111 (628)
T 4a0p_A 47 TDNRIYWTDIS-----LKTISRAFMNGSALEHVVEFGLD-YPEGMAVDWLGKNLYWADTG---------TNRIEVSKLDG 111 (628)
T ss_dssp TTTEEEEEETT-----TTEEEEEETTSCSCEEEECSSCS-CCCEEEEETTTTEEEEEETT---------TTEEEEEETTS
T ss_pred CCCEEEEEECC-----CCeEEEEECCCCCcEEEEeCCCC-CcceEEEEeCCCEEEEEECC---------CCEEEEEecCC
Confidence 36889988432 35788898877665554322111 1123444 47899997431 36899999875
Q ss_pred CCeEec--CCCCccccCCCCccccccccccceeeEEEe--CCEEEEec-cCCCCCceeccceEEEeCCCCceEEcCCCCC
Q 011881 256 DAWSEV--PSMPFSRAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQ-SLYSWPFFVDVGGEIYDPDTNSWVEMPIGMG 330 (475)
Q Consensus 256 ~~W~~~--~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~G-G~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 330 (475)
..=+.+ ..+..| .++++- +|.||+.- |.. -..++.++....-+.+...+.
T Consensus 112 ~~~~~l~~~~l~~P------------------~~iavdp~~G~lY~tD~g~~-------~~I~r~~~dG~~~~~l~~~~~ 166 (628)
T 4a0p_A 112 QHRQVLVWKDLDSP------------------RALALDPAEGFMYWTEWGGK-------PKIDRAAMDGSERTTLVPNVG 166 (628)
T ss_dssp TTCEEEECSSCCCE------------------EEEEEETTTTEEEEEECSSS-------CEEEEEETTSCSCEEEECSCS
T ss_pred CcEEEEEeCCCCCc------------------ccEEEccCCCeEEEeCCCCC-------CEEEEEeCCCCceEEEECCCC
Confidence 432222 233333 234443 78999853 211 234778877665555433221
Q ss_pred CCCCCccCCCeEEEEE--CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEe
Q 011881 331 EGWPARQAGTKLSVVL--DGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLT 406 (475)
Q Consensus 331 ~~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~G 406 (475)
+| . + +++- +++||+... ..+.|+++|+....=+.+.. .+ ...+++++.+++||+.-
T Consensus 167 --~P--~-G---lalD~~~~~LY~aD~----~~~~I~~~d~dG~~~~v~~~-----~l---~~P~glav~~~~ly~tD 224 (628)
T 4a0p_A 167 --RA--N-G---LTIDYAKRRLYWTDL----DTNLIESSNMLGLNREVIAD-----DL---PHPFGLTQYQDYIYWTD 224 (628)
T ss_dssp --SE--E-E---EEEETTTTEEEEEET----TTTEEEEEETTSCSCEEEEE-----CC---SCEEEEEEETTEEEEEE
T ss_pred --Cc--c-e---EEEccccCEEEEEEC----CCCEEEEEcCCCCceEEeec-----cC---CCceEEEEECCEEEEec
Confidence 12 1 1 3333 689999864 23689999987543233321 11 23467888889999875
No 250
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=65.68 E-value=81 Score=28.77 Aligned_cols=157 Identities=11% Similarity=0.206 Sum_probs=73.6
Q ss_pred EEeCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCc--cceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEE
Q 011881 176 GAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVG--RAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVF 251 (475)
Q Consensus 176 ~~~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~--R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~y 251 (475)
....+ +++.|+.++ .+.+||..++..+.+..+... ......+.+ ++++++.|+.+ ..+.+|
T Consensus 21 ~~s~~-~las~~~D~-----~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D---------~~v~iw 85 (330)
T 2hes_X 21 DFSQG-ILATGSTDR-----KIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD---------STVSIW 85 (330)
T ss_dssp EEETT-EEEEEESSS-----CEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT---------SCEEEE
T ss_pred ccCCC-EEEEEcCCC-----EEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC---------CcEEEE
Confidence 33444 666666543 577788877654433322111 111122223 56777777642 467788
Q ss_pred eCCCC-----CeEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCC--CceE
Q 011881 252 DPTTD-----AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDT--NSWV 323 (475)
Q Consensus 252 d~~t~-----~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~--~~W~ 323 (475)
|..+. .+..+..+...... + .+++ .-++++++.|+.++ ...+||... ..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~h~~~-------------V-~~v~~sp~g~~las~s~D~-------~v~iwd~~~~~~~~~ 144 (330)
T 2hes_X 86 AKEESADRTFEMDLLAIIEGHENE-------------V-KGVAWSNDGYYLATCSRDK-------SVWIWETDESGEEYE 144 (330)
T ss_dssp EC-------CCCEEEEEEC----C-------------E-EEEEECTTSCEEEEEETTS-------CEEEEECCTTCCCCE
T ss_pred EcccCcCccccceeEEEEcCCCCc-------------E-EEEEECCCCCEEEEEeCCC-------EEEEEeccCCCCCeE
Confidence 87532 12221111110000 0 1222 23566667666553 236788742 3444
Q ss_pred EcCCCCCCCCCCccCCCeEEE-EECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEc
Q 011881 324 EMPIGMGEGWPARQAGTKLSV-VLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVV 377 (475)
Q Consensus 324 ~~~~~~~~~~p~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 377 (475)
.+.. +.. .......++ ..++.+++.|+.+ ..|.+||..+..|..+
T Consensus 145 ~~~~-~~~----h~~~v~~v~~~p~~~~l~s~s~D----~~i~iW~~~~~~~~~~ 190 (330)
T 2hes_X 145 CISV-LQE----HSQDVKHVIWHPSEALLASSSYD----DTVRIWKDYDDDWECV 190 (330)
T ss_dssp EEEE-ECC----CSSCEEEEEECSSSSEEEEEETT----SCEEEEEEETTEEEEE
T ss_pred EEEE-ecc----CCCceEEEEECCCCCEEEEEcCC----CeEEEEECCCCCeeEE
Confidence 3322 110 011111122 2256777777743 5688888887777654
No 251
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=65.41 E-value=76 Score=28.34 Aligned_cols=64 Identities=9% Similarity=0.194 Sum_probs=34.3
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCC-------cEEeCCCCCCccceeeeEEE--C--CEEEEEeceecCCCCcccCCeE
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIAN-------TWNEATSMSVGRAYCKTGIL--N--DKLYVVGGVSRARGGLTPLQSA 248 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~-------~W~~~~~~p~~R~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~ 248 (475)
+.+++.|+.++ .+.+||..+. .|+.+..+.........+.+ + +.+++.|+. ...+
T Consensus 71 ~~~l~s~~~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------dg~v 136 (351)
T 3f3f_A 71 GRIIASASYDK-----TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN---------DGIL 136 (351)
T ss_dssp CSEEEEEETTS-----CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET---------TCEE
T ss_pred CCEEEEEcCCC-----eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC---------CCcE
Confidence 56667776543 5667776653 33433332222222222223 2 566666663 2578
Q ss_pred EEEeCCCCC
Q 011881 249 EVFDPTTDA 257 (475)
Q Consensus 249 ~~yd~~t~~ 257 (475)
.+||..+.+
T Consensus 137 ~iwd~~~~~ 145 (351)
T 3f3f_A 137 RLYDALEPS 145 (351)
T ss_dssp EEEECSSTT
T ss_pred EEecCCChH
Confidence 899987654
No 252
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=65.34 E-value=74 Score=28.24 Aligned_cols=63 Identities=14% Similarity=0.088 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
++..++.|+.++ .+.+||..+++-...-.....+ ......++.+.+.|+. ...+..++..+..
T Consensus 78 ~~~~l~sgs~Dg-----~v~iw~~~~~~~~~~~~~h~~~--~~~~~~~~~~l~s~~~---------~~~~~~~~~~~~~ 140 (318)
T 4ggc_A 78 EGNYLAVGTSSA-----EVQLWDVQQQKRLRNMTSHSAR--VGSLSWNSYILSSGSR---------SGHIHHHDVRVAE 140 (318)
T ss_dssp TSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSSC--EEEEEEETTEEEEEET---------TSEEEEEETTSSS
T ss_pred CCCEEEEEECCC-----cEEEeecCCceeEEEecCccce--EEEeecCCCEEEEEec---------CCceEeeecCCCc
Confidence 566677777543 6788888887643322212111 2233345556666553 2345555555543
No 253
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=65.16 E-value=84 Score=28.76 Aligned_cols=146 Identities=11% Similarity=-0.007 Sum_probs=81.0
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCC--CCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEAT--SMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDP 253 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 253 (475)
.++.||+.-.. ...+.++|+....-+.+. .+..|+ .+++. ++.||+..-. ....++++++
T Consensus 87 ~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~~~~~P~---~iavdp~~g~ly~~d~~--------~~~~I~~~~~ 150 (316)
T 1ijq_A 87 IHSNIYWTDSV-----LGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWG--------TPAKIKKGGL 150 (316)
T ss_dssp TTTEEEEEETT-----TTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECS--------SSCEEEEEET
T ss_pred cCCeEEEEECC-----CCEEEEEeCCCCceEEEEECCCCCcc---eEEeCCCCCEEEEEccC--------CCCeEEEEcC
Confidence 47899987432 357889998765444332 233332 34443 7899987521 1257899988
Q ss_pred CCCCeEecC--CCCccccCCCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCC
Q 011881 254 TTDAWSEVP--SMPFSRAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGM 329 (475)
Q Consensus 254 ~t~~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 329 (475)
....=+.+. .+..| .+++.- +++||+.-... ...+++|+....=+.+.. .
T Consensus 151 dG~~~~~~~~~~~~~P------------------~gla~d~~~~~lY~~D~~~-------~~I~~~d~dg~~~~~~~~-~ 204 (316)
T 1ijq_A 151 NGVDIYSLVTENIQWP------------------NGITLDLLSGRLYWVDSKL-------HSISSIDVNGGNRKTILE-D 204 (316)
T ss_dssp TSCCEEEEECSSCSCE------------------EEEEEETTTTEEEEEETTT-------TEEEEEETTSCSCEEEEE-C
T ss_pred CCCCeEEEEECCCCCc------------------eEEEEeccCCEEEEEECCC-------CeEEEEecCCCceEEEee-c
Confidence 654433331 12111 344443 68999864322 123788887543333321 1
Q ss_pred CCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 330 GEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 330 ~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
......+ ..+++.++.||+..- ..+.|.++|+.+.+
T Consensus 205 ~~~~~~P----~giav~~~~ly~~d~----~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 205 EKRLAHP----FSLAVFEDKVFWTDI----INEAIFSANRLTGS 240 (316)
T ss_dssp TTTTSSE----EEEEEETTEEEEEET----TTTEEEEEETTTCC
T ss_pred CCccCCc----EEEEEECCEEEEEEC----CCCeEEEEeCCCCc
Confidence 0001111 115667899999863 23689999986554
No 254
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=64.99 E-value=79 Score=28.43 Aligned_cols=137 Identities=15% Similarity=0.205 Sum_probs=68.7
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCC-cEEeCCCCCCccceeeeEE-ECCEEEEEeceecCCCCcccCCeEEEEeCCC-
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIAN-TWNEATSMSVGRAYCKTGI-LNDKLYVVGGVSRARGGLTPLQSAEVFDPTT- 255 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~-~W~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t- 255 (475)
++.||+.. . ...++.||+... .|+.-.+ ... ..+.+. -++.||+.. ..+.+||...
T Consensus 147 ~g~l~vgt-~-----~~~l~~~d~~g~~~~~~~~~--~~~-~~~~~~d~~g~l~v~t------------~~l~~~d~~g~ 205 (330)
T 3hxj_A 147 DGTIYVGS-N-----DNYLYAINPDGTEKWRFKTN--DAI-TSAASIGKDGTIYFGS------------DKVYAINPDGT 205 (330)
T ss_dssp TSCEEEEC-T-----TSEEEEECTTSCEEEEEECS--SCC-CSCCEECTTCCEEEES------------SSEEEECTTSC
T ss_pred CCEEEEEc-C-----CCEEEEECCCCCEeEEEecC--CCc-eeeeEEcCCCEEEEEe------------CEEEEECCCCc
Confidence 67777643 1 147889998822 2654322 111 122333 367777753 2577888432
Q ss_pred CCeEecCCCCccccCCCCccccccccccceeeEEEe-CCEEEEeccCCCCCceeccceEEEeCCCCc-eEEcCCCCCCCC
Q 011881 256 DAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY-MGRLCVPQSLYSWPFFVDVGGEIYDPDTNS-WVEMPIGMGEGW 333 (475)
Q Consensus 256 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~ 333 (475)
..|+...... .. .+.+.. +|.||+... + -+..+||+.... |..... .
T Consensus 206 ~~~~~~~~~~--~~----------------~~~~~~~~g~l~v~t~-~-------~gl~~~~~~g~~~~~~~~~-~---- 254 (330)
T 3hxj_A 206 EKWNFYAGYW--TV----------------TRPAISEDGTIYVTSL-D-------GHLYAINPDGTEKWRFKTG-K---- 254 (330)
T ss_dssp EEEEECCSSC--CC----------------SCCEECTTSCEEEEET-T-------TEEEEECTTSCEEEEEECS-S----
T ss_pred EEEEEccCCc--ce----------------eceEECCCCeEEEEcC-C-------CeEEEECCCCCEeEEeeCC-C----
Confidence 2466543211 11 222333 558887421 1 234778875544 554321 1
Q ss_pred CCccCCCeEEEEE-CCeEEEEcCCCCCCCCeEEEEeCCCC-cEEE
Q 011881 334 PARQAGTKLSVVL-DGELYAFDPSSSLNSAKIKVYDQKED-TWKV 376 (475)
Q Consensus 334 p~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~v~~yd~~~~-~W~~ 376 (475)
.... . .+.. ++.||+... ...+++||++.. .|..
T Consensus 255 --~~~~-~-~~~~~~g~l~v~t~-----~ggl~~~d~~g~~~~~~ 290 (330)
T 3hxj_A 255 --RIES-S-PVIGNTDTIYFGSY-----DGHLYAINPDGTEKWNF 290 (330)
T ss_dssp --CCCS-C-CEECTTSCEEEECT-----TCEEEEECTTSCEEEEE
T ss_pred --Cccc-c-ceEcCCCeEEEecC-----CCCEEEECCCCcEEEEE
Confidence 1111 1 2333 788888643 237999998533 4654
No 255
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=63.73 E-value=1.2e+02 Score=30.17 Aligned_cols=141 Identities=10% Similarity=0.080 Sum_probs=73.0
Q ss_pred cceEEEEeC--CCCcEEeCCCCCCccceeeeEEEC-CEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccC
Q 011881 194 MRCVRRYDP--IANTWNEATSMSVGRAYCKTGILN-DKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQ 270 (475)
Q Consensus 194 ~~~~~~yd~--~t~~W~~~~~~p~~R~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~ 270 (475)
...++..|. ....- .+...+..+ ......+ +.++++.+.. ..+.+||..+++-+.+...+. .
T Consensus 89 ~~~l~~~~~~~~g~~~-~l~~~~~~~--~~~~s~dg~~~~~~s~~~---------~~~~l~d~~~g~~~~l~~~~~---~ 153 (582)
T 3o4h_A 89 QHALFKVNTSRPGEEQ-RLEAVKPMR--ILSGVDTGEAVVFTGATE---------DRVALYALDGGGLRELARLPG---F 153 (582)
T ss_dssp CEEEEEEETTSTTCCE-ECTTSCSBE--EEEEEECSSCEEEEEECS---------SCEEEEEEETTEEEEEEEESS---C
T ss_pred ceEEEEEeccCCCccc-cccCCCCce--eeeeCCCCCeEEEEecCC---------CCceEEEccCCcEEEeecCCC---c
Confidence 456777877 43332 443333222 2233334 3455554421 234478988887666543222 1
Q ss_pred CCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeE
Q 011881 271 GLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGEL 350 (475)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~l 350 (475)
.....-+|+..++++.+.... ...+.+|+.++++..+..... .. ...+..-+|+.
T Consensus 154 ---------------~~~~spDG~~la~~~~~~~~~---~~i~~~d~~~g~~~~l~~~~~-----~~--~~~~~SpDG~~ 208 (582)
T 3o4h_A 154 ---------------GFVSDIRGDLIAGLGFFGGGR---VSLFTSNLSSGGLRVFDSGEG-----SF--SSASISPGMKV 208 (582)
T ss_dssp ---------------EEEEEEETTEEEEEEEEETTE---EEEEEEETTTCCCEEECCSSC-----EE--EEEEECTTSCE
T ss_pred ---------------eEEECCCCCEEEEEEEcCCCC---eEEEEEcCCCCCceEeecCCC-----cc--ccceECCCCCE
Confidence 233445666655544332111 113789999999887754111 11 11123346665
Q ss_pred EEEcCCCCCCCCeEEEEeCCCCcEEE
Q 011881 351 YAFDPSSSLNSAKIKVYDQKEDTWKV 376 (475)
Q Consensus 351 yv~GG~~~~~~~~v~~yd~~~~~W~~ 376 (475)
++.+..+. ...|+.+|+++++...
T Consensus 209 l~~~~~~~--~~~i~~~d~~~~~~~~ 232 (582)
T 3o4h_A 209 TAGLETAR--EARLVTVDPRDGSVED 232 (582)
T ss_dssp EEEEECSS--CEEEEEECTTTCCEEE
T ss_pred EEEccCCC--eeEEEEEcCCCCcEEE
Confidence 55433221 2489999999988773
No 256
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=63.55 E-value=92 Score=28.67 Aligned_cols=180 Identities=15% Similarity=0.105 Sum_probs=97.0
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCc---EEeCCCCCCccceeeeEE--ECCEEEEEeceecCCCCcccCCeEEEEeC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANT---WNEATSMSVGRAYCKTGI--LNDKLYVVGGVSRARGGLTPLQSAEVFDP 253 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~---W~~~~~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 253 (475)
++.||+.-- ....++++++.... +.....+..| ..+++ .+++||+.-.. ...++++++
T Consensus 46 ~~~lyw~D~-----~~~~I~r~~~~g~~~~~~~~~~~l~~p---~glavd~~~g~ly~~d~~---------~~~I~~~~~ 108 (318)
T 3sov_A 46 HGLIYWSDV-----SEEAIKRTEFNKTESVQNVVVSGLLSP---DGLACDWLGEKLYWTDSE---------TNRIEVSNL 108 (318)
T ss_dssp GTEEEEEET-----TTTEEEEEETTSSSCCCEEEEECCSCC---CEEEEETTTTEEEEEETT---------TTEEEEEET
T ss_pred CCEEEEEEC-----CCCcEEEEEccCCCceEEEEcCCCCCc---cEEEEEcCCCeEEEEECC---------CCEEEEEEC
Confidence 688998842 23578889887652 2222222222 12333 37899997431 367899998
Q ss_pred CCCCeEec--CCCCccccCCCCccccccccccceeeEEE--eCCEEEEeccCCCCCceeccceEEEeCCCCceEEc-CCC
Q 011881 254 TTDAWSEV--PSMPFSRAQGLPNAFFADMLKPIATGMTS--YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEM-PIG 328 (475)
Q Consensus 254 ~t~~W~~~--~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~ 328 (475)
....-+.+ ..+..| .++++ .++.||+.--... -..+++++....=+.+ ...
T Consensus 109 dG~~~~~l~~~~~~~P------------------~giavdp~~g~ly~td~~~~------~~I~r~~~dG~~~~~~~~~~ 164 (318)
T 3sov_A 109 DGSLRKVLFWQELDQP------------------RAIALDPSSGFMYWTDWGEV------PKIERAGMDGSSRFIIINSE 164 (318)
T ss_dssp TSCSCEEEECSSCSSE------------------EEEEEEGGGTEEEEEECSSS------CEEEEEETTSCSCEEEECSS
T ss_pred CCCcEEEEEeCCCCCc------------------cEEEEeCCCCEEEEEecCCC------CEEEEEEcCCCCeEEEEECC
Confidence 76543333 223322 23333 3688998541100 1237888764332332 221
Q ss_pred CCCCCCCccCCCeEEEEE--CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEe
Q 011881 329 MGEGWPARQAGTKLSVVL--DGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLT 406 (475)
Q Consensus 329 ~~~~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~G 406 (475)
+. +|. + .++- +++||+... ..+.|+++|++...-+.+.. .......++++.++.+|+.-
T Consensus 165 l~--~Pn-----g-lavd~~~~~lY~aD~----~~~~I~~~d~dG~~~~~~~~-------~~~~~P~glav~~~~lywtd 225 (318)
T 3sov_A 165 IY--WPN-----G-LTLDYEEQKLYWADA----KLNFIHKSNLDGTNRQAVVK-------GSLPHPFALTLFEDILYWTD 225 (318)
T ss_dssp CS--CEE-----E-EEEETTTTEEEEEET----TTTEEEEEETTSCSCEEEEC-------SCCSCEEEEEEETTEEEEEE
T ss_pred CC--Ccc-----E-EEEeccCCEEEEEEC----CCCEEEEEcCCCCceEEEec-------CCCCCceEEEEeCCEEEEEe
Confidence 11 121 1 3443 789999864 23689999987544333321 01123367888889999873
Q ss_pred ecCCCCeeEEEecCC
Q 011881 407 KDASRNISILRADPR 421 (475)
Q Consensus 407 G~~~~~~~v~~~d~~ 421 (475)
- .+. .|..+|+.
T Consensus 226 ~-~~~--~V~~~~~~ 237 (318)
T 3sov_A 226 W-STH--SILACNKY 237 (318)
T ss_dssp T-TTT--EEEEEETT
T ss_pred c-CCC--eEEEEECC
Confidence 2 222 36666664
No 257
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=63.23 E-value=30 Score=30.31 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=36.3
Q ss_pred eEEE-eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEE
Q 011881 287 GMTS-YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIK 365 (475)
Q Consensus 287 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~ 365 (475)
+++. .+|++|+|=|.. -++++.....+. +..+...||.-....-++...++++|+|-| +.+|
T Consensus 22 Ai~~~~~g~~yfFkg~~---------~Wr~~~~~~~~~--p~~Is~~wpgLP~~IDAA~~~~~~~yfFkG------~~yw 84 (219)
T 1hxn_A 22 AMVSDNHGATYVFSGSH---------YWRLDTNRDGWH--SWPIAHQWPQGPSTVDAAFSWEDKLYLIQD------TKVY 84 (219)
T ss_dssp EEEECTTSCEEEEETTE---------EEESSSSSCTTC--CEEGGGTCTTSCSSCSEEEEETTEEEEEET------TEEE
T ss_pred EEEECCCCcEEEEeCCE---------EEEEcCCCCCCC--ceEhhhhccCCCCCccEEEEECCcEEEecC------CEEE
Confidence 3343 589999986632 155554332221 000111121111122235566999999976 5899
Q ss_pred EEeCCC
Q 011881 366 VYDQKE 371 (475)
Q Consensus 366 ~yd~~~ 371 (475)
+|+..+
T Consensus 85 ~~~~~~ 90 (219)
T 1hxn_A 85 VFLTKG 90 (219)
T ss_dssp EEECSS
T ss_pred EEeCCC
Confidence 998764
No 258
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=63.21 E-value=1e+02 Score=29.16 Aligned_cols=111 Identities=6% Similarity=-0.072 Sum_probs=58.3
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCc--E-EeCCC--CCCcccee-eeEEE--CCEEEEEeceecCCCCcccCCeEEE
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANT--W-NEATS--MSVGRAYC-KTGIL--NDKLYVVGGVSRARGGLTPLQSAEV 250 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~--W-~~~~~--~p~~R~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~ 250 (475)
++++|+|-| +.+|+|+..... + +.+.. +|..-..- ++... ++++|+|-| +..++
T Consensus 236 ~g~~~fFkg-------~~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG-----------~~yw~ 297 (365)
T 3ba0_A 236 RNQVFLFKD-------DKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD-----------NQYWR 297 (365)
T ss_dssp GTEEEEEET-------TEEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET-----------TEEEE
T ss_pred CCEEEEEeC-------CEEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC-----------CEEEE
Confidence 789999966 478888754321 1 12322 23211122 22233 589999977 47899
Q ss_pred EeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEe-CCEEEEeccCCCCCceeccceEEEeCCCCceEE
Q 011881 251 FDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY-MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE 324 (475)
Q Consensus 251 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~ 324 (475)
||..+++-.. .-|.......++ +-.. ..++... ++++|+|-|. .-++||..+.+-..
T Consensus 298 yd~~~~~v~~--gyPk~I~~~f~g-----~p~~-iDaA~~~~~g~~YfFkg~---------~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 298 YDERRQMMDP--GYPKLITKNFQG-----IGPK-IDAVFYSKNKYYYFFQGS---------NQFEYDFLLQRITK 355 (365)
T ss_dssp EETTTTEECS--SCCCCHHHHSTT-----CCSS-CSEEEEETTTEEEEEETT---------EEEEEETTTTEEEE
T ss_pred EeCCcceecC--CCCcchhhcCCC-----CCCc-cceeeEecCCcEEEEeCC---------EEEEEECCccEEec
Confidence 9987654221 111111000000 0000 0344444 8999998662 23889988776544
No 259
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=62.95 E-value=85 Score=34.32 Aligned_cols=145 Identities=12% Similarity=-0.017 Sum_probs=75.8
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEEECCEEEEEeceecCCCCcccCCeEE-EEeCCCCCeEecCCCCccccCCCC
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAE-VFDPTTDAWSEVPSMPFSRAQGLP 273 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~-~yd~~t~~W~~~~~~p~~r~~~~~ 273 (475)
..++.+|..+.....+...+..+....... +++.+++++. ...++ +||..+..-..+.. ......
T Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~---------~~~l~~~~d~~~~~~~~l~~-~~~~~~--- 382 (1045)
T 1k32_A 317 GQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR---------EGDFLGIYDYRTGKAEKFEE-NLGNVF--- 382 (1045)
T ss_dssp TEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET---------TEEEEEEEETTTCCEEECCC-CCCSEE---
T ss_pred CEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC---------CCceEEEEECCCCCceEecC-Ccccee---
Confidence 367777877766655543222122222222 5555555432 24788 89998887666541 111111
Q ss_pred ccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEECCeEEEE
Q 011881 274 NAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYAF 353 (475)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~ 353 (475)
.....-+|+..+++..++ ...++|+.+++-..+..... ... ...+..-+|+.+++
T Consensus 383 ------------~~~~SpDG~~la~~~~~~-------~v~~~d~~tg~~~~~~~~~~----~~v--~~~~~SpDG~~la~ 437 (1045)
T 1k32_A 383 ------------AMGVDRNGKFAVVANDRF-------EIMTVDLETGKPTVIERSRE----AMI--TDFTISDNSRFIAY 437 (1045)
T ss_dssp ------------EEEECTTSSEEEEEETTS-------EEEEEETTTCCEEEEEECSS----SCC--CCEEECTTSCEEEE
T ss_pred ------------eeEECCCCCEEEEECCCC-------eEEEEECCCCceEEeccCCC----CCc--cceEECCCCCeEEE
Confidence 122234566555554321 23789999888766542111 111 11133446776666
Q ss_pred cCCCC------CCCCeEEEEeCCCCcEEEcC
Q 011881 354 DPSSS------LNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 354 GG~~~------~~~~~v~~yd~~~~~W~~v~ 378 (475)
++... .....++++|..+.+...+.
T Consensus 438 ~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~ 468 (1045)
T 1k32_A 438 GFPLKHGETDGYVMQAIHVYDMEGRKIFAAT 468 (1045)
T ss_dssp EEEECSSTTCSCCEEEEEEEETTTTEEEECS
T ss_pred EecCccccccCCCCCeEEEEECCCCcEEEee
Confidence 54321 22358999999988765553
No 260
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=62.73 E-value=1.4e+02 Score=30.57 Aligned_cols=147 Identities=10% Similarity=0.071 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCC-CCCccceeeeEEE--CC--EEEEEeceecCCCCcccCCeEEEEeC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATS-MSVGRAYCKTGIL--ND--KLYVVGGVSRARGGLTPLQSAEVFDP 253 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~-~p~~R~~~~~~~~--~~--~iyv~GG~~~~~~~~~~~~~~~~yd~ 253 (475)
++..++.|+.++ .+.+||.....-..+.. ....+....++.+ ++ .+++.|+. -..+.+||.
T Consensus 483 ~~~~l~s~s~D~-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---------d~~v~vwd~ 548 (694)
T 3dm0_A 483 DNRQIVSASRDR-----TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW---------DKTVKVWNL 548 (694)
T ss_dssp TSSCEEEEETTS-----CEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET---------TSCEEEEET
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC---------CCeEEEEEC
Confidence 455556665443 56777765543222221 1111222223333 22 35566653 257889999
Q ss_pred CCCCeEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCC
Q 011881 254 TTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEG 332 (475)
Q Consensus 254 ~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~ 332 (475)
.+.+-...-.-. ... + .+++ .-++++++.|+.++. ..+||..+.+-... +..
T Consensus 549 ~~~~~~~~~~~h--~~~-------------v-~~v~~spdg~~l~sg~~Dg~-------i~iwd~~~~~~~~~---~~~- 601 (694)
T 3dm0_A 549 SNCKLRSTLAGH--TGY-------------V-STVAVSPDGSLCASGGKDGV-------VLLWDLAEGKKLYS---LEA- 601 (694)
T ss_dssp TTCCEEEEECCC--SSC-------------E-EEEEECTTSSEEEEEETTSB-------CEEEETTTTEEEEC---CBC-
T ss_pred CCCcEEEEEcCC--CCC-------------E-EEEEEeCCCCEEEEEeCCCe-------EEEEECCCCceEEE---ecC-
Confidence 876533211100 000 0 2222 336777777776542 37888877653221 110
Q ss_pred CCCccCCCeEEEEE-CCeEEEEcCCCCCCCCeEEEEeCCCCcEE
Q 011881 333 WPARQAGTKLSVVL-DGELYAFDPSSSLNSAKIKVYDQKEDTWK 375 (475)
Q Consensus 333 ~p~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~v~~yd~~~~~W~ 375 (475)
. .....++.. ++.+++.+. .+.|.+||.++.+-.
T Consensus 602 ---~-~~v~~~~~sp~~~~l~~~~-----~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 602 ---N-SVIHALCFSPNRYWLCAAT-----EHGIKIWDLESKSIV 636 (694)
T ss_dssp ---S-SCEEEEEECSSSSEEEEEE-----TTEEEEEETTTTEEE
T ss_pred ---C-CcEEEEEEcCCCcEEEEEc-----CCCEEEEECCCCCCh
Confidence 1 111112333 444444443 246899999877543
No 261
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=62.65 E-value=1.1e+02 Score=29.26 Aligned_cols=152 Identities=11% Similarity=0.020 Sum_probs=80.3
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
-++.||+.... ...+.++|+.+++-+.+.... ...+ .+.. ++.||+.... + ...++++|+.+
T Consensus 140 ~~g~lyv~d~~-----~~~I~~id~~~g~~~~~~~~~--~~~~-ia~~~~g~~l~~~d~~-----~---~~~I~~~d~~~ 203 (409)
T 3hrp_A 140 GNNTVLAYQRD-----DPRVRLISVDDNKVTTVHPGF--KGGK-PAVTKDKQRVYSIGWE-----G---THTVYVYMKAS 203 (409)
T ss_dssp STTEEEEEETT-----TTEEEEEETTTTEEEEEEETC--CBCB-CEECTTSSEEEEEBSS-----T---TCEEEEEEGGG
T ss_pred CCCCEEEEecC-----CCcEEEEECCCCEEEEeeccC--CCCc-eeEecCCCcEEEEecC-----C---CceEEEEEcCC
Confidence 46889998642 357999999988766553321 1122 3332 4567776532 1 12789999876
Q ss_pred CC-eEecCCCCc-cccCCCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCC
Q 011881 256 DA-WSEVPSMPF-SRAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGE 331 (475)
Q Consensus 256 ~~-W~~~~~~p~-~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 331 (475)
+. ...+..... .... + +++++. ++.||+... + -...+||+.+..-..+......
T Consensus 204 ~~~~~~~g~~~~~~~~~--p------------~~iav~p~~g~lyv~d~-~-------~~I~~~d~~~~~~~~~~~~~~~ 261 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGK--I------------GAVALDETEEWLYFVDS-N-------KNFGRFNVKTQEVTLIKQLELS 261 (409)
T ss_dssp TTCEEEEEECCTTSCSC--C------------CBCEECTTSSEEEEECT-T-------CEEEEEETTTCCEEEEEECCCC
T ss_pred CceeEEeeeccchhcCC--c------------EEEEEeCCCCeEEEEEC-C-------CcEEEEECCCCCEEEEeccccc
Confidence 53 223311111 0000 0 233333 688999432 1 1248899988876555110000
Q ss_pred CCCCccCCCeEEEEE--CCeEEEEcCCCCCCCCeEEEEeCCCC
Q 011881 332 GWPARQAGTKLSVVL--DGELYAFDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 332 ~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~ 372 (475)
+......... +++. ++.||+... ..+.|++||+...
T Consensus 262 g~~~~~P~~~-ia~~p~~g~lyv~d~----~~~~I~~~~~~g~ 299 (409)
T 3hrp_A 262 GSLGTNPGPY-LIYYFVDSNFYMSDQ----NLSSVYKITPDGE 299 (409)
T ss_dssp SCCCCSSCCE-EEEETTTTEEEEEET----TTTEEEEECTTCC
T ss_pred CCCCCCcccc-EEEeCCCCEEEEEeC----CCCEEEEEecCCC
Confidence 0000110012 4444 589999864 2368999998765
No 262
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=61.74 E-value=55 Score=29.15 Aligned_cols=55 Identities=11% Similarity=0.121 Sum_probs=34.6
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCCCe
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAW 258 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 258 (475)
+.+.+||..+++-...-.+........++.+ +++.++.|+. -..+.+||.++++-
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~---------Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS---------SAEVQLWDVQQQKR 101 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET---------TSEEEEEETTTTEE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC---------CCcEEEeecCCcee
Confidence 4688999999876654333322222223333 6677777774 25788999988753
No 263
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=61.39 E-value=1.1e+02 Score=29.07 Aligned_cols=19 Identities=11% Similarity=0.286 Sum_probs=14.3
Q ss_pred eEEEEcCCCCCCCCeEEEEeCCC
Q 011881 349 ELYAFDPSSSLNSAKIKVYDQKE 371 (475)
Q Consensus 349 ~lyv~GG~~~~~~~~v~~yd~~~ 371 (475)
.+++.|+.+ +.|.+||..+
T Consensus 291 ~~l~tg~~d----g~v~vwd~~~ 309 (430)
T 2xyi_A 291 FILATGSAD----KTVALWDLRN 309 (430)
T ss_dssp TEEEEEETT----SEEEEEETTC
T ss_pred CEEEEEeCC----CeEEEEeCCC
Confidence 478888743 5799999876
No 264
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=60.81 E-value=1.6e+02 Score=30.43 Aligned_cols=152 Identities=7% Similarity=-0.070 Sum_probs=76.8
Q ss_pred cceEEEEeCCCCcEE--eCCCCC-CccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCC------C--CeEec
Q 011881 194 MRCVRRYDPIANTWN--EATSMS-VGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTT------D--AWSEV 261 (475)
Q Consensus 194 ~~~~~~yd~~t~~W~--~~~~~p-~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t------~--~W~~~ 261 (475)
...++++++.+.+.+ .+-..+ .+......... +++..++..... ......++++|..+ . .++.+
T Consensus 207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~----~~~~~~l~~~d~~~~~~~~~~~~~~~~l 282 (710)
T 2xdw_A 207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG----CDPVNRLWYCDLQQESNGITGILKWVKL 282 (710)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS----SSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEcc----CCCccEEEEEECcccccccCCccceEEe
Confidence 456899999887642 221211 12222223322 555444443211 11146889999876 4 57766
Q ss_pred CCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCC---ceEEcCCCCCCCCCCccC
Q 011881 262 PSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTN---SWVEMPIGMGEGWPARQA 338 (475)
Q Consensus 262 ~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~---~W~~~~~~~~~~~p~~~~ 338 (475)
..-..... .....-++.||+.+..+... .....+|+.+. .|+.+.... ...
T Consensus 283 ~~~~~~~~----------------~~~s~dg~~l~~~s~~~~~~----~~l~~~d~~~~~~~~~~~l~~~~------~~~ 336 (710)
T 2xdw_A 283 IDNFEGEY----------------DYVTNEGTVFTFKTNRHSPN----YRLINIDFTDPEESKWKVLVPEH------EKD 336 (710)
T ss_dssp ECSSSSCE----------------EEEEEETTEEEEEECTTCTT----CEEEEEETTSCCGGGCEEEECCC------SSC
T ss_pred eCCCCcEE----------------EEEeccCCEEEEEECCCCCC----CEEEEEeCCCCCcccceeccCCC------CCC
Confidence 43211110 22233467788776533211 22377888775 588875421 101
Q ss_pred CCeEEEEE-CCeEEEEcCCCCCCCCeEEEEeCCCCc-EEEc
Q 011881 339 GTKLSVVL-DGELYAFDPSSSLNSAKIKVYDQKEDT-WKVV 377 (475)
Q Consensus 339 ~~~~~~~~-~~~lyv~GG~~~~~~~~v~~yd~~~~~-W~~v 377 (475)
....++.. +++|++....+. ...++++|+.+++ ...+
T Consensus 337 ~~~~~~~~~~~~lv~~~~~~g--~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 337 VLEWVACVRSNFLVLCYLHDV--KNTLQLHDLATGALLKIF 375 (710)
T ss_dssp EEEEEEEETTTEEEEEEEETT--EEEEEEEETTTCCEEEEE
T ss_pred eEEEEEEEcCCEEEEEEEECC--EEEEEEEECCCCCEEEec
Confidence 11113445 677777654332 2478999985554 4554
No 265
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=60.59 E-value=1.3e+02 Score=30.46 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=35.7
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPT 254 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 254 (475)
++.+||.... .+.+.++|+.+++-.. .++....-|.++.. +..+|+.+. ...+.+||+.
T Consensus 166 ~~~~~V~~~~-----~~~V~viD~~t~~v~~--~i~~g~~p~~v~~SpDGr~lyv~~~----------dg~V~viD~~ 226 (567)
T 1qks_A 166 ENLFSVTLRD-----AGQIALIDGSTYEIKT--VLDTGYAVHISRLSASGRYLFVIGR----------DGKVNMIDLW 226 (567)
T ss_dssp GGEEEEEETT-----TTEEEEEETTTCCEEE--EEECSSCEEEEEECTTSCEEEEEET----------TSEEEEEETT
T ss_pred CceEEEEeCC-----CCeEEEEECCCCeEEE--EEeCCCCccceEECCCCCEEEEEcC----------CCeEEEEECC
Confidence 5677777532 3589999999876432 22223233444433 446787542 2479999995
No 266
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=59.52 E-value=60 Score=31.48 Aligned_cols=143 Identities=15% Similarity=0.099 Sum_probs=73.8
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-C-CEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-N-DKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.||+.--. ..+.++|+.+++.+.+.. ...+ -..+++. + +.||+..... + .....+..++...
T Consensus 149 ~g~Lyv~d~~------~~I~~id~~~~~v~~~~~-~~~~-P~~ia~d~~G~~lyvad~~~----~-~~~~~v~~~~~~g- 214 (430)
T 3tc9_A 149 HNHLYLVGEQ------HPTRLIDFEKEYVSTVYS-GLSK-VRTICWTHEADSMIITNDQN----N-NDRPNNYILTRES- 214 (430)
T ss_dssp EEEEEEEEBT------EEEEEEETTTTEEEEEEC-CCSC-EEEEEECTTSSEEEEEECCS----C-TTSEEEEEEEGGG-
T ss_pred CCeEEEEeCC------CcEEEEECCCCEEEEEec-CCCC-cceEEEeCCCCEEEEEeCCC----C-cccceEEEEeCCC-
Confidence 4789988421 689999999988877644 1111 1122222 3 4599986421 1 1123456666533
Q ss_pred CeE---ecCCCCccccCCCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCC
Q 011881 257 AWS---EVPSMPFSRAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGE 331 (475)
Q Consensus 257 ~W~---~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 331 (475)
.|. .++.+..| +++++. ++.||+.--.. ....+||+.+..-..+......
T Consensus 215 ~~~~~~~l~~~~~p------------------~giavdp~~g~lyv~d~~~-------~~V~~~~~~~~~~~~~~~~~~~ 269 (430)
T 3tc9_A 215 GFKVITELTKGQNC------------------NGAETHPINGELYFNSWNA-------GQVFRYDFTTQETTPLFTIQDS 269 (430)
T ss_dssp TSCSEEEEEECSSC------------------CCEEECTTTCCEEEEETTT-------TEEEEEETTTTEEEEEEECSSS
T ss_pred ceeeeeeeccCCCc------------------eEEEEeCCCCEEEEEECCC-------CEEEEEECCCCcEEEEEEcCCC
Confidence 332 22222211 344443 68899853211 1248899987765333210111
Q ss_pred CCCCccCCCeEEEE-ECCe-EEEEcCCCCCCCCeEEEEeCC
Q 011881 332 GWPARQAGTKLSVV-LDGE-LYAFDPSSSLNSAKIKVYDQK 370 (475)
Q Consensus 332 ~~p~~~~~~~~~~~-~~~~-lyv~GG~~~~~~~~v~~yd~~ 370 (475)
.+|. . +++ -+++ ||+..- ..+.|++|+.+
T Consensus 270 ~~P~-----g-ia~~pdG~~lyv~d~----~~~~I~~~~~d 300 (430)
T 3tc9_A 270 GWEF-----H-IQFHPSGNYAYIVVV----NQHYILRSDYD 300 (430)
T ss_dssp SCCE-----E-EEECTTSSEEEEEET----TTTEEEEEEEE
T ss_pred Ccce-----e-EEEcCCCCEEEEEEC----CCCEEEEEeCC
Confidence 1121 1 333 3455 999854 23578887654
No 267
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=58.88 E-value=1.1e+02 Score=28.16 Aligned_cols=161 Identities=12% Similarity=-0.091 Sum_probs=74.2
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEE--ECCEEEEEeceecCC----C---------CcccCCeEEEEeCCCCCeE
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGI--LNDKLYVVGGVSRAR----G---------GLTPLQSAEVFDPTTDAWS 259 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~--~~~~iyv~GG~~~~~----~---------~~~~~~~~~~yd~~t~~W~ 259 (475)
..++++|+.+.+-+.+...+.......... -++++++.--..... . .......++++|+.+++-+
T Consensus 102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 478999999988766655554332222221 244443321110000 0 0012367999999988765
Q ss_pred ecCCCCccccCCCCccccccccccceeeEEEe-CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccC
Q 011881 260 EVPSMPFSRAQGLPNAFFADMLKPIATGMTSY-MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQA 338 (475)
Q Consensus 260 ~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~ 338 (475)
.+..-+.. .. +....- +++..++........ .....+.+|+.+.....+..... ....
T Consensus 182 ~l~~~~~~-~~---------------~~~~sp~dg~~l~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~----~~~~ 240 (388)
T 3pe7_A 182 VILQENQW-LG---------------HPIYRPYDDSTVAFCHEGPHDL-VDARMWLINEDGTNMRKVKTHAE----GESC 240 (388)
T ss_dssp EEEEESSC-EE---------------EEEEETTEEEEEEEEECSCTTT-SSCSEEEEETTSCCCEESCCCCT----TEEE
T ss_pred EeecCCcc-cc---------------ccEECCCCCCEEEEEEecCCCC-CcceEEEEeCCCCceEEeeeCCC----Cccc
Confidence 55321110 11 222333 455333322111100 00233788888777766654110 0001
Q ss_pred CCeEEEEECCe-EEEEcCCCCCCCCeEEEEeCCCCcEEEc
Q 011881 339 GTKLSVVLDGE-LYAFDPSSSLNSAKIKVYDQKEDTWKVV 377 (475)
Q Consensus 339 ~~~~~~~~~~~-lyv~GG~~~~~~~~v~~yd~~~~~W~~v 377 (475)
. .....-+|+ |+............++.+|+++.+-+.+
T Consensus 241 ~-~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l 279 (388)
T 3pe7_A 241 T-HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQL 279 (388)
T ss_dssp E-EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEE
T ss_pred c-cceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEE
Confidence 1 112223555 5443322211113599999998876665
No 268
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=58.17 E-value=1.6e+02 Score=29.68 Aligned_cols=154 Identities=14% Similarity=0.096 Sum_probs=77.4
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEe-CCCCCC---ccc-eeeeEEE--CCEEEEEeceecCCCCcccCCeEEEE
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNE-ATSMSV---GRA-YCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVF 251 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~p~---~R~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~y 251 (475)
++.+++.|+.++ .+.+||..+.+-.. +..... ... ....+.+ +++.++.|+. -..+.++
T Consensus 201 dg~~las~s~D~-----~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~---------D~~v~lW 266 (611)
T 1nr0_A 201 DGSLFASTGGDG-----TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA---------DKTIKIW 266 (611)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET---------TSEEEEE
T ss_pred CCCEEEEEECCC-----cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeC---------CCeEEEE
Confidence 566777777543 57788887765432 211000 111 1112222 5677777764 2588999
Q ss_pred eCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCC
Q 011881 252 DPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGE 331 (475)
Q Consensus 252 d~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 331 (475)
|..+.+....-......... ...+..++...+.++.++. ...+|+.+.+-...-...
T Consensus 267 d~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~s~s~d~~-------i~~~~~~~~~~~~~~~gh-- 323 (611)
T 1nr0_A 267 NVATLKVEKTIPVGTRIEDQ--------------QLGIIWTKQALVSISANGF-------INFVNPELGSIDQVRYGH-- 323 (611)
T ss_dssp ETTTTEEEEEEECCSSGGGC--------------EEEEEECSSCEEEEETTCC-------EEEEETTTTEEEEEECCC--
T ss_pred eCCCCceeeeecCCCCccce--------------eEEEEEcCCEEEEEeCCCc-------EEEEeCCCCCcceEEcCC--
Confidence 99887654321111111100 1223335555555554432 266787766532221100
Q ss_pred CCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEc
Q 011881 332 GWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVV 377 (475)
Q Consensus 332 ~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 377 (475)
...-.+.+..-+++.++.|+.+ ..|.+||..+.+-..+
T Consensus 324 ----~~~v~~l~~spdg~~l~s~s~D----~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 324 ----NKAITALSSSADGKTLFSADAE----GHINSWDISTGISNRV 361 (611)
T ss_dssp ----SSCEEEEEECTTSSEEEEEETT----SCEEEEETTTCCEEEC
T ss_pred ----CCCEEEEEEeCCCCEEEEEeCC----CcEEEEECCCCceeee
Confidence 0000111122367777777643 5789999988766553
No 269
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=57.96 E-value=1.7e+02 Score=29.91 Aligned_cols=183 Identities=16% Similarity=0.166 Sum_probs=97.2
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEE--ECCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGI--LNDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.||+.-- ....++++++.....+.+..-...+ -..+++ .++.||+.-.. ...+++.++...
T Consensus 360 ~~~ly~sD~-----~~~~I~r~~~~g~~~~~v~~~~~~~-p~GlAvD~~~~~lY~tD~~---------~~~I~v~~~~G~ 424 (619)
T 3s94_A 360 EGYIYWTDD-----EVRAIRRSFIDGSGSQFVVTAQIAH-PDGIAVDWVARNLYWTDTG---------TDRIEVTRLNGT 424 (619)
T ss_dssp TTEEEEEET-----TTTEEEEEETTSCSCEEEECSSCSC-CCEEEEETTTTEEEEEETT---------TTEEEEEETTSC
T ss_pred CCeEEEEeC-----CCCeEEEEEcCCCccEEEEECCCCC-cCceEEecccCcEEEEeCC---------CCcEEEEeCCCC
Confidence 578888732 2457888888876665553211111 113444 37899997431 368899988765
Q ss_pred CeEec--CCCCccccCCCCccccccccccceeeEEEe--CCEEEEec-cCCCCCceeccceEEEeCCCCceEEcCCCCCC
Q 011881 257 AWSEV--PSMPFSRAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQ-SLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGE 331 (475)
Q Consensus 257 ~W~~~--~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~G-G~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 331 (475)
.-+.+ ..+..|+ ++++. +|.||+.. |.. -..++.++....=..+.. ...
T Consensus 425 ~~~~l~~~~l~~P~------------------~iavdp~~G~ly~tD~g~~-------~~I~r~~~dG~~~~~l~~-~~l 478 (619)
T 3s94_A 425 MRKILISEDLEEPR------------------AIVLDPMVGYMYWTDWGEI-------PKIERAALDGSDRVVLVN-TSL 478 (619)
T ss_dssp SCEEEECTTCCSEE------------------EEEEETTTTEEEEEECSSS-------CEEEEEETTSCSCEEEEC-SSC
T ss_pred eEEEEEECCCCCee------------------eEEEEcCCCcEEEecCCCC-------CEEEEEccCCCccEEEEe-CCC
Confidence 43333 2333333 33443 68999853 110 123666665433222221 111
Q ss_pred CCCCccCCCeEEEEE--CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecC
Q 011881 332 GWPARQAGTKLSVVL--DGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDA 409 (475)
Q Consensus 332 ~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~ 409 (475)
.+|. | .++- +++||+.... .+.|+.+|++...=+.+.. ..+. ..+++++.++.||+.--.
T Consensus 479 ~~P~---G---lalD~~~~~LY~aD~~----~~~I~~~~~dG~~~~~~~~----~~l~---~P~glav~~~~ly~tD~~- 540 (619)
T 3s94_A 479 GWPN---G---LALDYDEGKIYWGDAK----TDKIEVMNTDGTGRRVLVE----DKIP---HIFGFTLLGDYVYWTDWQ- 540 (619)
T ss_dssp SCEE---E---EEEETTTTEEEEEETT----TTEEEEEESSSCCCEEEEE----CCCC---SSCCEEEETTEEEEECTT-
T ss_pred CCCe---e---eEEcccCCEEEEEECC----CCEEEEEecCCCceEEEec----cCCC---CcEEEEEECCEEEEeecC-
Confidence 1121 1 3443 6899999642 3589999987543333211 0122 235788889999987532
Q ss_pred CCCeeEEEecCCC
Q 011881 410 SRNISILRADPRD 422 (475)
Q Consensus 410 ~~~~~v~~~d~~~ 422 (475)
.-.+...|..+
T Consensus 541 --~~~I~~~~k~~ 551 (619)
T 3s94_A 541 --RRSIERVHKRS 551 (619)
T ss_dssp --SSCEEEEESSS
T ss_pred --CCeEEEEEcCC
Confidence 22255555443
No 270
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=57.76 E-value=1e+02 Score=27.38 Aligned_cols=64 Identities=6% Similarity=0.098 Sum_probs=34.0
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCC--CcEEeCCCCCCccceeeeEEE----CCEEEEEeceecCCCCcccCCeEEEEe
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIA--NTWNEATSMSVGRAYCKTGIL----NDKLYVVGGVSRARGGLTPLQSAEVFD 252 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t--~~W~~~~~~p~~R~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~yd 252 (475)
++.+++.|+.++ .+.+||..+ ..++.+..+........++.+ ++.+++.|+.+ ..+.+||
T Consensus 22 ~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d---------g~v~vwd 87 (351)
T 3f3f_A 22 YGRHVATCSSDQ-----HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD---------KTVKLWE 87 (351)
T ss_dssp SSSEEEEEETTS-----EEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT---------SCEEEEE
T ss_pred CCCEEEEeeCCC-----eEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC---------CeEEEEe
Confidence 555666666443 566677664 344444332222222223333 36777777742 4678888
Q ss_pred CCCC
Q 011881 253 PTTD 256 (475)
Q Consensus 253 ~~t~ 256 (475)
..+.
T Consensus 88 ~~~~ 91 (351)
T 3f3f_A 88 EDPD 91 (351)
T ss_dssp ECTT
T ss_pred cCCC
Confidence 8764
No 271
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=57.06 E-value=1.1e+02 Score=27.59 Aligned_cols=144 Identities=10% Similarity=0.070 Sum_probs=70.3
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEe-CCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNE-ATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
++..++.|+.+ ..+.+||..+++-.. +.. .......+.+ ++.+++.|+. -..+.+||...
T Consensus 76 dg~~l~s~s~D-----~~v~~wd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~---------D~~i~vwd~~~ 138 (319)
T 3frx_A 76 DGAYALSASWD-----KTLRLWDVATGETYQRFVG---HKSDVMSVDIDKKASMIISGSR---------DKTIKVWTIKG 138 (319)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEEC---CSSCEEEEEECTTSCEEEEEET---------TSCEEEEETTS
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCeeEEEcc---CCCcEEEEEEcCCCCEEEEEeC---------CCeEEEEECCC
Confidence 55666667654 368889988875322 211 0111112222 5667777764 24678888865
Q ss_pred CCeEecCCCCccccCCCCccccccccccceeeEEEe-------CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCC
Q 011881 256 DAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY-------MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIG 328 (475)
Q Consensus 256 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~ 328 (475)
..-..+..-.... ..+... ++.+++.|+.++ ....||..+.+-...-..
T Consensus 139 ~~~~~~~~h~~~v-----------------~~~~~~~~~~~~~~~~~l~s~~~d~-------~i~~wd~~~~~~~~~~~~ 194 (319)
T 3frx_A 139 QCLATLLGHNDWV-----------------SQVRVVPNEKADDDSVTIISAGNDK-------MVKAWNLNQFQIEADFIG 194 (319)
T ss_dssp CEEEEECCCSSCE-----------------EEEEECCC------CCEEEEEETTS-------CEEEEETTTTEEEEEECC
T ss_pred CeEEEEeccCCcE-----------------EEEEEccCCCCCCCccEEEEEeCCC-------EEEEEECCcchhheeecC
Confidence 4333222111000 111111 233455555443 236788876553321110
Q ss_pred CCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 329 MGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 329 ~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
. ...-...+...++++++.|+.+ ..|.+||..+.+
T Consensus 195 h------~~~v~~~~~sp~g~~l~s~~~d----g~i~iwd~~~~~ 229 (319)
T 3frx_A 195 H------NSNINTLTASPDGTLIASAGKD----GEIMLWNLAAKK 229 (319)
T ss_dssp C------CSCEEEEEECTTSSEEEEEETT----CEEEEEETTTTE
T ss_pred C------CCcEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCc
Confidence 0 0000111223367777777743 579999998764
No 272
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=55.24 E-value=42 Score=34.52 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=17.2
Q ss_pred ECCeEEEEcCCCCCCCCeEEEEeCCCC
Q 011881 346 LDGELYAFDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 346 ~~~~lyv~GG~~~~~~~~v~~yd~~~~ 372 (475)
.++++|+|-| +..|+||..++
T Consensus 547 ~~gktYFFkG------~~ywryd~~~~ 567 (631)
T 1ck7_A 547 KNKKTYIFAG------DKFWRYNEVKK 567 (631)
T ss_dssp TTCEEEEEET------TEEEEEETTTT
T ss_pred CCCeEEEEEC------CEEEEEcCCcc
Confidence 4689999977 58999998765
No 273
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=55.18 E-value=2e+02 Score=29.98 Aligned_cols=126 Identities=10% Similarity=0.108 Sum_probs=62.9
Q ss_pred CCCcEEeCCCCCCccceeeeEE---ECCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecC--CCCccccCCCCcccc
Q 011881 203 IANTWNEATSMSVGRAYCKTGI---LNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVP--SMPFSRAQGLPNAFF 277 (475)
Q Consensus 203 ~t~~W~~~~~~p~~R~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~r~~~~~~~~~ 277 (475)
.-.+|+.+..+|... .... -++.+|+.+. ..+++=.-.-.+|+.+. .+|. ..
T Consensus 554 ~G~tW~~~~~~~~~~---~i~~~~~~~~~~~a~~~-----------g~v~~S~DgG~tW~~~~~~~~p~-~~-------- 610 (737)
T 2cn3_A 554 NGNSWKVCTNLGMGA---VVASDRVNGKKFYAFYN-----------GKFYISTDGGLTFTDTKAPQLPK-SV-------- 610 (737)
T ss_dssp TTSSCEECBTCCTTC---EEEECSSCTTCEEEEET-----------TEEEEESSTTSBCEECCCSSCCS-CC--------
T ss_pred CCCCCccCCCCCCCc---eEEEEecCCCEEEEecC-----------CEEEEECCCCcCcccccCCCCCC-cc--------
Confidence 356799987655431 1221 2456776652 23333222345699874 3443 11
Q ss_pred ccccccceeeEEE---eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEE----EC---
Q 011881 278 ADMLKPIATGMTS---YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVV----LD--- 347 (475)
Q Consensus 278 ~~~~~~~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~----~~--- 347 (475)
..+.. .++.+|+.+... +.++-+-.-.+|+++.. .. .. .. ..+ .+
T Consensus 611 --------~~i~~~~~~~g~l~~~~~~g--------~l~~S~D~G~tW~~~~~-~~-----~~--~~-~~~~~~~~~~~~ 665 (737)
T 2cn3_A 611 --------NKIKAVPGKEGHVWLAAREG--------GLWRSTDGGYTFEKLSN-VD-----TA--HV-VGFGKAAPGQDY 665 (737)
T ss_dssp --------SEEEEETTEEEEEEEECBTT--------CEEEESSTTSSCEECTT-CS-----EE--EE-EEEECCCTTCSS
T ss_pred --------ceEEEEeCCCCEEEEEeCCC--------cEEEEeCCCcccEECcC-CC-----cc--ce-EEEeecCCCCCC
Confidence 12222 256788866321 11333334479999864 21 11 11 111 12
Q ss_pred CeEEEEcCCCCCCCCeEEEEeCCCCcEEEcC
Q 011881 348 GELYAFDPSSSLNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 348 ~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 378 (475)
+.||++|.... ...+++-+-.-.+|+++.
T Consensus 666 ~~l~~~g~~g~--~~gl~~S~D~G~tW~~~~ 694 (737)
T 2cn3_A 666 MAIYITGKIDN--VLGFFRSDDAGKTWVRIN 694 (737)
T ss_dssp CEEEEEEEETT--EEEEEEESSTTSSCEECS
T ss_pred cEEEEEEecCC--cceEEEeCCCCCCCEecc
Confidence 26888863211 123555555567899985
No 274
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=55.08 E-value=1.2e+02 Score=27.40 Aligned_cols=149 Identities=14% Similarity=0.067 Sum_probs=71.2
Q ss_pred cceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCC--------------CCc----ccCCeEEEEeCC
Q 011881 194 MRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRAR--------------GGL----TPLQSAEVFDPT 254 (475)
Q Consensus 194 ~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~--------------~~~----~~~~~~~~yd~~ 254 (475)
...++++|..+.+.+.+...+. ....... +++.+++....... ++. .....++++|+.
T Consensus 84 ~~~l~~~~~~~g~~~~l~~~~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 84 VSEIWVADLETLSSKKILEAKN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEESE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred cceEEEEECCCCceEEEEcCCC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 4579999999888776654332 1122222 55444443321000 000 013578899999
Q ss_pred CCCe-EecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCc--eeccceEEEeCCCCceEEcCCCCCC
Q 011881 255 TDAW-SEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPF--FVDVGGEIYDPDTNSWVEMPIGMGE 331 (475)
Q Consensus 255 t~~W-~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~--~~~~~~~~yd~~~~~W~~~~~~~~~ 331 (475)
+++. +.+.. + ... .....-++ +++.+....... ......+.+| ++++..+...
T Consensus 161 ~~~~~~~l~~-~--~~~---------------~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~--- 216 (347)
T 2gop_A 161 SEEVIEEFEK-P--RFS---------------SGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK--- 216 (347)
T ss_dssp TTEEEEEEEE-E--TTC---------------EEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE---
T ss_pred CCeEEeeecC-C--Ccc---------------cccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC---
Confidence 8877 55543 2 111 22233345 554443321100 0012236667 6677666431
Q ss_pred CCCCccCCCeEEEEECCeEEEEcCCCC----CCCCeEEEEeCCCCcEEEcC
Q 011881 332 GWPARQAGTKLSVVLDGELYAFDPSSS----LNSAKIKVYDQKEDTWKVVI 378 (475)
Q Consensus 332 ~~p~~~~~~~~~~~~~~~lyv~GG~~~----~~~~~v~~yd~~~~~W~~v~ 378 (475)
.... ...-+|+.+++.+... .....++.+| +.+++.+.
T Consensus 217 ------~~~~-~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 217 ------VSFY-AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp ------ESEE-EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred ------ccee-eECCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence 1111 2245665444433221 1235899999 66677663
No 275
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=53.69 E-value=1.5e+02 Score=28.13 Aligned_cols=145 Identities=11% Similarity=0.002 Sum_probs=80.8
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCC--CCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEAT--SMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDP 253 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 253 (475)
.++.||+.-.. ...++++|+....-+.+. .+..|+ .+++. ++.||+.--. ....++++++
T Consensus 169 ~~~~lY~~d~~-----~~~I~~~~~~g~~~~~l~~~~~~~P~---~iavdp~~g~ly~td~~--------~~~~I~~~~~ 232 (400)
T 3p5b_L 169 IHSNIYWTDSV-----LGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWG--------TPAKIKKGGL 232 (400)
T ss_dssp TTTEEEEEETT-----TTEEEEECTTTCSEEEEEECSSCCEE---EEEEETTTTEEEEEECS--------SSCCEEEEET
T ss_pred cCCceEEEECC-----CCeEEEEeCCCCceEEEEeCCCCCcc---eEEEecccCeEEEEeCC--------CCCEEEEEeC
Confidence 47899998432 357889998877655542 233332 34443 6899987411 1257888888
Q ss_pred CCCCeEec-C-CCCccccCCCCccccccccccceeeEEE--eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCC
Q 011881 254 TTDAWSEV-P-SMPFSRAQGLPNAFFADMLKPIATGMTS--YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGM 329 (475)
Q Consensus 254 ~t~~W~~~-~-~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 329 (475)
....=+.+ . .+..| .++++ .+++||+.-... ..++++|+....-..+.. .
T Consensus 233 dG~~~~~~~~~~l~~P------------------~glavd~~~~~lY~aD~~~-------~~I~~~d~dG~~~~~~~~-~ 286 (400)
T 3p5b_L 233 NGVDIYSLVTENIQWP------------------NGITLDLLSGRLYWVDSKL-------HSISSIDVNGGNRKTILE-D 286 (400)
T ss_dssp TSCSCEEEECSSCSCE------------------EEEEEETTTTEEEEEETTT-------TEEEEEETTSCCCEEEEE-C
T ss_pred CCCccEEEEECCCCce------------------EEEEEEeCCCEEEEEECCC-------CEEEEEeCCCCccEEEEe-C
Confidence 75432222 1 12211 34444 378999964321 124788887544333322 1
Q ss_pred CCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCC
Q 011881 330 GEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKED 372 (475)
Q Consensus 330 ~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 372 (475)
...++.+. .+++.++.||+..- ..+.|+++|..+.
T Consensus 287 ~~~l~~P~----gl~v~~~~lywtd~----~~~~V~~~~~~~G 321 (400)
T 3p5b_L 287 EKRLAHPF----SLAVFEDKVFWTDI----INEAIFSANRLTG 321 (400)
T ss_dssp SSTTSSEE----EEEEETTEEEEEES----SSCSEEEEESSSC
T ss_pred CCCCCCCE----EEEEeCCEEEEecC----CCCeEEEEEcCCC
Confidence 11111121 25678999999863 2357899986544
No 276
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=52.76 E-value=2.8e+02 Score=30.86 Aligned_cols=186 Identities=10% Similarity=0.060 Sum_probs=96.5
Q ss_pred ceEEEEeCCCCcEEeCCC--CCCccceeeeEEE--C---CEEEEEeceecC-CCCcccCCeEEEEeCCCCCeEecCCCCc
Q 011881 195 RCVRRYDPIANTWNEATS--MSVGRAYCKTGIL--N---DKLYVVGGVSRA-RGGLTPLQSAEVFDPTTDAWSEVPSMPF 266 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~--~p~~R~~~~~~~~--~---~~iyv~GG~~~~-~~~~~~~~~~~~yd~~t~~W~~~~~~p~ 266 (475)
..+..+|+.+ |+.+.. +...-...+++.+ . ...+++|-.... .........+.+|+....+.+.+...+.
T Consensus 807 s~i~lidp~t--~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v 884 (1158)
T 3ei3_A 807 HNLLIIDQHT--FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEV 884 (1158)
T ss_dssp EEEEEEETTT--CCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEeCCC--CeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEc
Confidence 4566778765 544432 2222222223322 2 245666643211 1111234568888877556655543222
Q ss_pred cccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEE
Q 011881 267 SRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVL 346 (475)
Q Consensus 267 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~ 346 (475)
.-. ..+++.++|+|.+.-| ....+||...++--+... ...+. .......+.
T Consensus 885 ~g~---------------v~al~~~~g~Lla~ig---------~~l~vy~l~~~~~L~~~~---~~~~~--i~~~~l~~~ 935 (1158)
T 3ei3_A 885 KGA---------------VYSMVEFNGKLLASIN---------STVRLYEWTTEKELRTEC---NHYNN--IMALYLKTK 935 (1158)
T ss_dssp SSC---------------EEEEEEETTEEEEEET---------TEEEEEEECTTSCEEEEE---EECCC--SCEEEEEEE
T ss_pred CCc---------------CEEEeeeCCEEEEEcC---------CEEEEEECCCCceEEEEe---ecccc--EEEEEEecc
Confidence 111 1677888998766433 223778877655322111 00010 011113356
Q ss_pred CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeecCCCCeeEEEecCC
Q 011881 347 DGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKDASRNISILRADPR 421 (475)
Q Consensus 347 ~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~v~~~d~~ 421 (475)
++.|+|-.-.. +-.+..|+.+.++-..+.. =..+|...++..+++. .++|+....++.++.+++.
T Consensus 936 ~~~I~vgD~~~---Sv~~~~y~~~~~~L~~~a~------D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 936 GDFILVGDLMR---SVLLLAYKPMEGNFEEIAR------DFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp TTEEEEEESSB---CEEEEEEETTTTEEEEEEE------CCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTT
T ss_pred CCEEEEEEhhh---eEEEEEEEcCCCeEEEEEe------ecccccEEEEEEEccC-cEEEEcCCCcEEEEecCCC
Confidence 77766644322 2367778998888877752 1334544455555443 5677888888889999875
No 277
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=51.66 E-value=92 Score=30.04 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=62.4
Q ss_pred eeEEEeCCEEEEeccCCCCCceeccceEEE----eCCCCceE-EcCCCCCCCCCCccCCCeEEEEECCeEEEEc-CC-CC
Q 011881 286 TGMTSYMGRLCVPQSLYSWPFFVDVGGEIY----DPDTNSWV-EMPIGMGEGWPARQAGTKLSVVLDGELYAFD-PS-SS 358 (475)
Q Consensus 286 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~y----d~~~~~W~-~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~G-G~-~~ 358 (475)
|+.+.+++.-|.+|-..+.-....+|...| +.-...=. +++... .+.+.-.++-.++|.||+.. |. ..
T Consensus 287 HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey-----~~~AsEPCvkyYdgvLyLtTRgt~~~ 361 (670)
T 3ju4_A 287 HSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEY-----EPDASEPCIKYYDGVLYLITRGTRGD 361 (670)
T ss_dssp EEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGG-----CTTEEEEEEEEETTEEEEEEEESCTT
T ss_pred eeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhh-----ccccccchhhhhCCEEEEEecCcCCC
Confidence 899999998888886555433222333322 11111111 222211 11122223557899999983 22 22
Q ss_pred CCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEEeCCeEEEEeec
Q 011881 359 LNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSAFHGKLHVLTKD 408 (475)
Q Consensus 359 ~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~ 408 (475)
.....+.+-+.....|..+.- |. +.. ....-.+..++.||+||-+
T Consensus 362 ~~GS~L~rs~d~Gq~w~slrf--p~-nvH--htnlPFakvgD~l~mFgsE 406 (670)
T 3ju4_A 362 RLGSSLHRSRDIGQTWESLRF--PH-NVH--HTTLPFAKVGDDLIMFGSE 406 (670)
T ss_dssp SCCCEEEEESSTTSSCEEEEC--TT-CCC--SSCCCEEEETTEEEEEEEC
T ss_pred CCcceeeeecccCCchhheec--cc-ccc--ccCCCcceeCCEEEEEecc
Confidence 233577777777888998742 21 111 2223456789999999964
No 278
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=51.46 E-value=1.4e+02 Score=27.12 Aligned_cols=61 Identities=8% Similarity=0.238 Sum_probs=32.6
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEe-CCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNE-ATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
++.+.+.|+.+ ..+.+||..+.+... +.. . ......+.+ +++.++.||. -..+.+||...
T Consensus 87 ~~~~l~s~s~D-----~~v~lwd~~~~~~~~~~~~-h--~~~v~~v~~sp~~~~l~s~~~---------d~~i~~wd~~~ 149 (343)
T 2xzm_R 87 ENCFAISSSWD-----KTLRLWDLRTGTTYKRFVG-H--QSEVYSVAFSPDNRQILSAGA---------EREIKLWNILG 149 (343)
T ss_dssp STTEEEEEETT-----SEEEEEETTSSCEEEEEEC-C--CSCEEEEEECSSTTEEEEEET---------TSCEEEEESSS
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCcEEEEEcC-C--CCcEEEEEECCCCCEEEEEcC---------CCEEEEEeccC
Confidence 45566666654 367888888765432 211 0 111112222 5566666664 25678888764
Q ss_pred C
Q 011881 256 D 256 (475)
Q Consensus 256 ~ 256 (475)
.
T Consensus 150 ~ 150 (343)
T 2xzm_R 150 E 150 (343)
T ss_dssp C
T ss_pred C
Confidence 4
No 279
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=50.35 E-value=1.7e+02 Score=27.71 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=15.9
Q ss_pred CCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 226 NDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 226 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++.+++.|+. ...+.+||..+.
T Consensus 243 ~~~~l~s~~~---------dg~i~i~d~~~~ 264 (430)
T 2xyi_A 243 HESLFGSVAD---------DQKLMIWDTRNN 264 (430)
T ss_dssp CTTEEEEEET---------TSEEEEEETTCS
T ss_pred CCCEEEEEeC---------CCeEEEEECCCC
Confidence 4567777763 368999999875
No 280
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=49.96 E-value=2.4e+02 Score=29.24 Aligned_cols=83 Identities=8% Similarity=0.003 Sum_probs=45.9
Q ss_pred eEEEeCCCC--c-eEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCC--CcEEEcCCcCccccC
Q 011881 312 GEIYDPDTN--S-WVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKE--DTWKVVIGKVPIRDF 386 (475)
Q Consensus 312 ~~~yd~~~~--~-W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~--~~W~~v~~~~p~~~~ 386 (475)
.+.+|..+. . |..+..... .....+...++.||+....+ .....|+.+|+++ ..|+.+....
T Consensus 296 l~~~d~~~~~~~~~~~l~~~~~-------~~~~~~~~dg~~l~~~s~~~-~~~~~l~~~d~~~~~~~~~~l~~~~----- 362 (741)
T 1yr2_A 296 VHVARVTNGKIGPVTALIPDLK-------AQWDFVDGVGDQLWFVSGDG-APLKKIVRVDLSGSTPRFDTVVPES----- 362 (741)
T ss_dssp EEEEEEETTEECCCEEEECSSS-------SCEEEEEEETTEEEEEECTT-CTTCEEEEEECSSSSCEEEEEECCC-----
T ss_pred EEEEECCCCCCcccEEecCCCC-------ceEEEEeccCCEEEEEECCC-CCCCEEEEEeCCCCccccEEEecCC-----
Confidence 367788776 6 888764211 11111234566777775432 2235899999987 5798874211
Q ss_pred CCCCCCeEEEEeCCeEEEEeecC
Q 011881 387 ADSESPYLLSAFHGKLHVLTKDA 409 (475)
Q Consensus 387 ~~~r~~~~~~~~~~~l~v~GG~~ 409 (475)
. .....+...++++++.....
T Consensus 363 ~--~~l~~~~~~~~~lv~~~~~d 383 (741)
T 1yr2_A 363 K--DNLESVGIAGNRLFASYIHD 383 (741)
T ss_dssp S--SEEEEEEEEBTEEEEEEEET
T ss_pred C--CeEEEEEEECCEEEEEEEEC
Confidence 0 11113344577777766543
No 281
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=49.20 E-value=1.6e+02 Score=27.18 Aligned_cols=154 Identities=12% Similarity=-0.005 Sum_probs=74.4
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeE--EECCEEEEEeceecCCCCcccCCeEEEEeCCCC
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTG--ILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTD 256 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~ 256 (475)
++++++.|+. +.+.+++..+.+................+ .-+++.++.++.+.. ....+..+|....
T Consensus 187 dg~~l~s~s~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~-----~~~~i~~~~~~~~ 255 (365)
T 4h5i_A 187 DGKVVAYITG------SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG-----KGIVLTKISIKSG 255 (365)
T ss_dssp TSSEEEEECS------SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS-----CCEEEEEEEEETT
T ss_pred CCceEEeccc------eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc-----ceeEEeecccccc
Confidence 5555555542 34667777766654322222112222222 237888888775321 1235666776665
Q ss_pred CeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEE-cCCCCCCCCCC
Q 011881 257 AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE-MPIGMGEGWPA 335 (475)
Q Consensus 257 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~p~ 335 (475)
.............. ..+......-++++.+.|+.++ .+.+||.++.+-.. +.. ..
T Consensus 256 ~~~~~~~~~~~~~~-----------~~V~~~~~Spdg~~lasgs~D~-------~V~iwd~~~~~~~~~~~~-gH----- 311 (365)
T 4h5i_A 256 NTSVLRSKQVTNRF-----------KGITSMDVDMKGELAVLASNDN-------SIALVKLKDLSMSKIFKQ-AH----- 311 (365)
T ss_dssp EEEEEEEEEEESSC-----------SCEEEEEECTTSCEEEEEETTS-------CEEEEETTTTEEEEEETT-SS-----
T ss_pred eecceeeeeecCCC-----------CCeEeEEECCCCCceEEEcCCC-------EEEEEECCCCcEEEEecC-cc-----
Confidence 54432111000000 0000112234788888787654 24789988765332 211 00
Q ss_pred ccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCC
Q 011881 336 RQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKE 371 (475)
Q Consensus 336 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~ 371 (475)
...-.+.+..-++++++-|+.+ +.|.++|+..
T Consensus 312 ~~~V~~v~fSpdg~~laS~S~D----~tvrvw~ip~ 343 (365)
T 4h5i_A 312 SFAITEVTISPDSTYVASVSAA----NTIHIIKLPL 343 (365)
T ss_dssp SSCEEEEEECTTSCEEEEEETT----SEEEEEECCT
T ss_pred cCCEEEEEECCCCCEEEEEeCC----CeEEEEEcCC
Confidence 0000111223478888777643 5788888753
No 282
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=49.12 E-value=1.4e+02 Score=26.45 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=36.2
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--C--CEEEEEeceecCCCCcccCCeEEEEeCCC
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--N--DKLYVVGGVSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~~yd~~t 255 (475)
+.+++.|+.++ .+.+||..+.+|..+..+.........+.+ + +.+++.|+. -..+.+||..+
T Consensus 67 g~~l~s~s~D~-----~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~---------d~~v~~wd~~~ 132 (297)
T 2pm7_B 67 GTILASCSYDG-----KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS---------DGKVSVVEFKE 132 (297)
T ss_dssp CSEEEEEETTT-----EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET---------TSEEEEEEBCS
T ss_pred CCEEEEEcCCC-----EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC---------CCcEEEEEecC
Confidence 55666776543 678888888777655433221112223333 1 556666664 25788888876
Q ss_pred C
Q 011881 256 D 256 (475)
Q Consensus 256 ~ 256 (475)
.
T Consensus 133 ~ 133 (297)
T 2pm7_B 133 N 133 (297)
T ss_dssp S
T ss_pred C
Confidence 5
No 283
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=47.82 E-value=1.8e+02 Score=27.34 Aligned_cols=170 Identities=12% Similarity=0.066 Sum_probs=90.2
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCC--CCccccC
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPS--MPFSRAQ 270 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~--~p~~r~~ 270 (475)
+.+.++|+.....+.+.+-. ..-.+++.. +++||+.--. ...++++++.....+.+.. +..|
T Consensus 96 ~~I~~i~~~~~~~~~~~~~~--~~~~gl~~d~~~~~ly~~D~~---------~~~I~r~~~~g~~~~~~~~~~~~~p--- 161 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNNL--ENAIALDFHHRRELVFWSDVT---------LDRILRANLNGSNVEEVVSTGLESP--- 161 (386)
T ss_dssp SCEEEECTTSCCCEEEECSC--SCEEEEEEETTTTEEEEEETT---------TTEEEEEETTSCCEEEEECSSCSCC---
T ss_pred ccceeeccCCCcEEEEecCC--CccEEEEEecCCCeEEEEeCC---------CCcEEEEecCCCCcEEEEeCCCCCc---
Confidence 46788888877766553211 122334433 5899998431 3689999998876655422 2211
Q ss_pred CCCccccccccccceeeEEE--eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCC-CCCCCCCCccCCCeEEEEE-
Q 011881 271 GLPNAFFADMLKPIATGMTS--YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPI-GMGEGWPARQAGTKLSVVL- 346 (475)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~p~~~~~~~~~~~~- 346 (475)
.++++ .++.||+.-... ...+++++....-..+.. .+. .++ + +++.
T Consensus 162 ---------------~glavd~~~g~lY~~d~~~-------~~I~~~~~dg~~~~~l~~~~l~----~P~-g---iavdp 211 (386)
T 3v65_B 162 ---------------GGLAVDWVHDKLYWTDSGT-------SRIEVANLDGAHRKVLLWQSLE----KPR-A---IALHP 211 (386)
T ss_dssp ---------------CCEEEETTTTEEEEEETTT-------TEEEECBTTSCSCEEEECSSCS----CEE-E---EEEET
T ss_pred ---------------cEEEEEeCCCeEEEEcCCC-------CeEEEEeCCCCceEEeecCCCC----CCc-E---EEEEc
Confidence 23333 478999864321 123677776554333322 111 111 1 4444
Q ss_pred -CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEE--eCCeEEEEeecCCCCeeEEEecCC
Q 011881 347 -DGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSA--FHGKLHVLTKDASRNISILRADPR 421 (475)
Q Consensus 347 -~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~--~~~~l~v~GG~~~~~~~v~~~d~~ 421 (475)
++.||+..-.. ...|++++++...-+.+.. ..+ ....+++. .+++||+.-... . .|..+|+.
T Consensus 212 ~~g~ly~td~~~---~~~I~r~~~dG~~~~~~~~----~~~---~~PnGlavd~~~~~lY~aD~~~-~--~I~~~d~d 276 (386)
T 3v65_B 212 MEGTIYWTDWGN---TPRIEASSMDGSGRRIIAD----THL---FWPNGLTIDYAGRRMYWVDAKH-H--VIERANLD 276 (386)
T ss_dssp TTTEEEEEECSS---SCEEEEEETTSCSCEEEEC----SSC---SCEEEEEEEGGGTEEEEEETTT-T--EEEEECTT
T ss_pred CCCeEEEeccCC---CCEEEEEeCCCCCcEEEEE----CCC---CCeeeEEEeCCCCEEEEEECCC-C--EEEEEeCC
Confidence 68899985321 2589999987654333311 011 11234444 478888874322 2 35555554
No 284
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=45.41 E-value=1.8e+02 Score=26.46 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=16.5
Q ss_pred CCEEEEEeceecCCCCcccCCeEEEEeCCCCCe
Q 011881 226 NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAW 258 (475)
Q Consensus 226 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 258 (475)
++.+.+.|+. -..+.+||..+.+-
T Consensus 87 ~~~~l~s~s~---------D~~v~lwd~~~~~~ 110 (343)
T 2xzm_R 87 ENCFAISSSW---------DKTLRLWDLRTGTT 110 (343)
T ss_dssp STTEEEEEET---------TSEEEEEETTSSCE
T ss_pred CCCEEEEEcC---------CCcEEEEECCCCcE
Confidence 4566666664 25789999988753
No 285
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=45.40 E-value=2.7e+02 Score=28.58 Aligned_cols=149 Identities=11% Similarity=-0.009 Sum_probs=75.8
Q ss_pred cceEEEEeCCCCcE--EeCCCCCC--ccceeeeEE-ECCEEEEEeceecCCCCcccCCeEEEEeCCCC--CeEecCCCCc
Q 011881 194 MRCVRRYDPIANTW--NEATSMSV--GRAYCKTGI-LNDKLYVVGGVSRARGGLTPLQSAEVFDPTTD--AWSEVPSMPF 266 (475)
Q Consensus 194 ~~~~~~yd~~t~~W--~~~~~~p~--~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~ 266 (475)
...+++++..+..= +.+-..+. +........ -+++..++..... ...+.++.+|..+. .|+.+..-..
T Consensus 207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-----~~~~~i~~~d~~~~~~~~~~l~~~~~ 281 (693)
T 3iuj_A 207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS-----TSGNRLYVKDLSQENAPLLTVQGDLD 281 (693)
T ss_dssp CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS-----SSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC-----CCCcEEEEEECCCCCCceEEEeCCCC
Confidence 45688888777543 12222221 221222222 2555444332211 11368999998765 6777643221
Q ss_pred cccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCC---ceEEcCCCCCCCCCCccCCCeEE
Q 011881 267 SRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTN---SWVEMPIGMGEGWPARQAGTKLS 343 (475)
Q Consensus 267 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~---~W~~~~~~~~~~~p~~~~~~~~~ 343 (475)
... ......++.||+....+... .....+|+.+. .|+.+.+... ... ..
T Consensus 282 ~~~----------------~~~~~~g~~l~~~t~~~~~~----~~l~~~d~~~~~~~~~~~l~~~~~----~~~----~~ 333 (693)
T 3iuj_A 282 ADV----------------SLVDNKGSTLYLLTNRDAPN----RRLVTVDAANPGPAHWRDLIPERQ----QVL----TV 333 (693)
T ss_dssp SCE----------------EEEEEETTEEEEEECTTCTT----CEEEEEETTSCCGGGCEEEECCCS----SCE----EE
T ss_pred ceE----------------EEEeccCCEEEEEECCCCCC----CEEEEEeCCCCCccccEEEecCCC----CEE----EE
Confidence 111 12334578888876543211 22367787763 4887654211 111 24
Q ss_pred EEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEc
Q 011881 344 VVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVV 377 (475)
Q Consensus 344 ~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 377 (475)
...++.|++..-.+. ...++++|++....+.+
T Consensus 334 s~~g~~lv~~~~~~g--~~~l~~~d~~g~~~~~l 365 (693)
T 3iuj_A 334 HSGSGYLFAEYMVDA--TARVEQFDYEGKRVREV 365 (693)
T ss_dssp EEETTEEEEEEEETT--EEEEEEECTTSCEEEEE
T ss_pred EEECCEEEEEEEECC--eeEEEEEECCCCeeEEe
Confidence 556677666532221 24789999987766655
No 286
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=45.08 E-value=2.2e+02 Score=27.34 Aligned_cols=56 Identities=13% Similarity=0.021 Sum_probs=30.6
Q ss_pred CeEEEEeCCCC------cEEEcCCcCccccCCCCCCCe--EEEEeCCeEEEEeecCCCCeeEEEec
Q 011881 362 AKIKVYDQKED------TWKVVIGKVPIRDFADSESPY--LLSAFHGKLHVLTKDASRNISILRAD 419 (475)
Q Consensus 362 ~~v~~yd~~~~------~W~~v~~~~p~~~~~~~r~~~--~~~~~~~~l~v~GG~~~~~~~v~~~d 419 (475)
..+.+||..+. .|+....... .....|..+ ....-+.++++++......+.++..+
T Consensus 269 ~~v~i~~l~~~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 269 PDVVMALLPKKEEKHPEIFVNFMEPCY--GSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CEEEEEECCCTTTCCCCEEEECCCSSC--CCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred CceEEEEeccCCCCCCcceEecccCCC--CCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 46888887643 5666533211 011223222 22234667888887777777777654
No 287
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=44.78 E-value=2.2e+02 Score=31.40 Aligned_cols=85 Identities=9% Similarity=0.058 Sum_probs=43.1
Q ss_pred eEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEEEC------CeEEEEcCCCC---CCCCeEEEEeCCC--CcEEEcCCc
Q 011881 312 GEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLD------GELYAFDPSSS---LNSAKIKVYDQKE--DTWKVVIGK 380 (475)
Q Consensus 312 ~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~------~~lyv~GG~~~---~~~~~v~~yd~~~--~~W~~v~~~ 380 (475)
+.+|....++|+.... +.........|.+ +++.| ..|+++|.... .....+++|.-.. ..|......
T Consensus 414 V~i~~~~~~~~~~~~~-~~g~~~gs~fG~s-va~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~~~l 491 (1095)
T 3k6s_A 414 AVIFTQVSRQWRMKAE-VTGTQIGSYFGAS-LCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDAVL 491 (1095)
T ss_dssp EEEEECCTTTCCEEEE-ECCSSTTSCTTSC-EEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCSSTTCCCSCSSC
T ss_pred EEEEEecCCcceEEee-cccCcccCcCCce-EEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCCCCcceeeeEEe
Confidence 3678777778987543 1111123445555 34421 34777774322 2346788886543 458743211
Q ss_pred CccccCCCCCCCeEEEEe
Q 011881 381 VPIRDFADSESPYLLSAF 398 (475)
Q Consensus 381 ~p~~~~~~~r~~~~~~~~ 398 (475)
......+..+.+.+++.+
T Consensus 492 ~g~~~~~~~~FG~sva~~ 509 (1095)
T 3k6s_A 492 YGEQGHPWGRFGAALTVL 509 (1095)
T ss_dssp CCCCSCSSCCBTSCEEEE
T ss_pred ecccCCccccCccceEee
Confidence 111111345667777654
No 288
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=41.08 E-value=2.3e+02 Score=26.46 Aligned_cols=63 Identities=22% Similarity=0.247 Sum_probs=37.8
Q ss_pred CCEEEEEcCCCCCCCcceEEEEeCCCCc---EEeCCCCCCccceeeeE-EE--CCEEEEEeceecCCCCcccCCeEEEEe
Q 011881 179 DGCLYVLGGFSRTSAMRCVRRYDPIANT---WNEATSMSVGRAYCKTG-IL--NDKLYVVGGVSRARGGLTPLQSAEVFD 252 (475)
Q Consensus 179 ~~~lyv~GG~~~~~~~~~~~~yd~~t~~---W~~~~~~p~~R~~~~~~-~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd 252 (475)
+|.+||.+-.. ...++++|+.... |-.-.+....+.+.... .. +..|++..+ ...+.+||
T Consensus 147 ~GnaYVt~s~~----~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~----------~g~L~~fD 212 (334)
T 2p9w_A 147 DGNSYVAFALG----MPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG----------PRALTAFD 212 (334)
T ss_dssp TSCEEEEEEES----SCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS----------SSSEEEEE
T ss_pred CCCEEEeCCCC----CCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC----------CCeEEEEc
Confidence 57899975432 1469999998653 54333333345555444 44 346666654 25789999
Q ss_pred CCC
Q 011881 253 PTT 255 (475)
Q Consensus 253 ~~t 255 (475)
+.+
T Consensus 213 ~~~ 215 (334)
T 2p9w_A 213 VSK 215 (334)
T ss_dssp CSS
T ss_pred CCC
Confidence 874
No 289
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=39.53 E-value=2.3e+02 Score=26.15 Aligned_cols=170 Identities=12% Similarity=0.066 Sum_probs=90.7
Q ss_pred ceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCC--CCccccC
Q 011881 195 RCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPS--MPFSRAQ 270 (475)
Q Consensus 195 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~--~p~~r~~ 270 (475)
..+.++++.....+.+.+-. ..-.+++.. +++||+.--. ...++++++....-+.+.. +..|
T Consensus 53 ~~I~~i~~~g~~~~~~~~~~--~~~~~l~~d~~~~~ly~~D~~---------~~~I~r~~~~g~~~~~~~~~~~~~p--- 118 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNNL--ENAIALDFHHRRELVFWSDVT---------LDRILRANLNGSNVEEVVSTGLESP--- 118 (349)
T ss_dssp SCEEEECTTSCCEEEEECSC--SCEEEEEEETTTTEEEEEETT---------TTEEEEEETTSCSCEEEECSSCSCC---
T ss_pred cceEEEeCCCCeeEEeecCC--CceEEEEEeccccEEEEEecc---------CCceEEEecCCCCceEEEeCCCCCc---
Confidence 45788888887776653211 112233333 5899997431 3678999998776554321 2111
Q ss_pred CCCccccccccccceeeEEE--eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCC-CCCCCCCCccCCCeEEEEE-
Q 011881 271 GLPNAFFADMLKPIATGMTS--YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPI-GMGEGWPARQAGTKLSVVL- 346 (475)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~p~~~~~~~~~~~~- 346 (475)
.++++ .++.||+.-... ...+++|+....-..+.. .+. .++ + +++.
T Consensus 119 ---------------~glavd~~~g~ly~~d~~~-------~~I~~~~~dG~~~~~l~~~~l~----~P~-~---iavdp 168 (349)
T 3v64_C 119 ---------------GGLAVDWVHDKLYWTDSGT-------SRIEVANLDGAHRKVLLWQSLE----KPR-A---IALHP 168 (349)
T ss_dssp ---------------CEEEEETTTTEEEEEETTT-------TEEEEEETTSCSCEEEECTTCS----CEE-E---EEEET
T ss_pred ---------------cEEEEecCCCeEEEEcCCC-------CeEEEEcCCCCceEEEEeCCCC----Ccc-e---EEEec
Confidence 23343 478999864321 123788887654443322 111 121 1 4444
Q ss_pred -CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCeEEEE--eCCeEEEEeecCCCCeeEEEecCC
Q 011881 347 -DGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPYLLSA--FHGKLHVLTKDASRNISILRADPR 421 (475)
Q Consensus 347 -~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~--~~~~l~v~GG~~~~~~~v~~~d~~ 421 (475)
++.||+..-.. ...|++++++...-+.+.. ..+ ....+++. .+++||+.-... . .|..+|++
T Consensus 169 ~~g~ly~td~~~---~~~I~r~~~dG~~~~~~~~----~~~---~~PnGla~d~~~~~lY~aD~~~-~--~I~~~~~d 233 (349)
T 3v64_C 169 MEGTIYWTDWGN---TPRIEASSMDGSGRRIIAD----THL---FWPNGLTIDYAGRRMYWVDAKH-H--VIERANLD 233 (349)
T ss_dssp TTTEEEEEECSS---SCEEEEEETTSCSCEESCC----SSC---SCEEEEEEETTTTEEEEEETTT-T--EEEEEETT
T ss_pred CcCeEEEeccCC---CCEEEEEeCCCCCcEEEEE----CCC---CCcceEEEeCCCCEEEEEECCC-C--EEEEEeCC
Confidence 68899985321 2689999987654444321 011 11234444 377888864322 2 24455544
No 290
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=39.30 E-value=3.5e+02 Score=28.14 Aligned_cols=61 Identities=10% Similarity=-0.012 Sum_probs=35.7
Q ss_pred cceEEEEeCCCC--cE--EeCCCCCCccceeeeE-EECCEEEEEeceecCCCCcccCCeEEEEeCCC-CCeEe
Q 011881 194 MRCVRRYDPIAN--TW--NEATSMSVGRAYCKTG-ILNDKLYVVGGVSRARGGLTPLQSAEVFDPTT-DAWSE 260 (475)
Q Consensus 194 ~~~~~~yd~~t~--~W--~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t-~~W~~ 260 (475)
.++++.+|+.+. .+ +.+.+-... ..+... ..++.||+..-.+ ......++.+|..+ ..|+.
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~~~-~~~s~~~~~g~~l~~~t~~~-----~a~~~~L~~~d~~~~~~~~~ 360 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPREKG-VRYDVQMHGTSHLVILTNEG-----GAVNHKLLIAPRGQPSDWSH 360 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCCTT-CCEEEEEETTTEEEEEECTT-----TCTTCEEEEEETTSTTCCCC
T ss_pred CceEEEEECCCCCCCceeEEeecCCCC-ceEEEeeeeCCEEEEEeCCC-----CCCCcEEEEEcCCCccccee
Confidence 578999999875 46 655332111 112222 2377888885421 01235788999876 67876
No 291
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=39.29 E-value=2.7e+02 Score=26.86 Aligned_cols=189 Identities=11% Similarity=0.056 Sum_probs=96.5
Q ss_pred ccceeEEEeCCEEEEEcCCCCCCCcceE-EEEeCC-----CC-cEEeCCCCC-CccceeeeEEECCEEEEEeceecCCCC
Q 011881 170 FCGCAIGAVDGCLYVLGGFSRTSAMRCV-RRYDPI-----AN-TWNEATSMS-VGRAYCKTGILNDKLYVVGGVSRARGG 241 (475)
Q Consensus 170 r~~~~~~~~~~~lyv~GG~~~~~~~~~~-~~yd~~-----t~-~W~~~~~~p-~~R~~~~~~~~~~~iyv~GG~~~~~~~ 241 (475)
..-|+.+.+++.=|.+|=.+++..-..+ ..|-+. .. .=+.++.-- ..-..+++-.++++||+.---. ..
T Consensus 284 Te~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyYdgvLyLtTRgt---~~ 360 (670)
T 3ju4_A 284 TEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGT---RG 360 (670)
T ss_dssp SEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGCTTEEEEEEEEETTEEEEEEEES---CT
T ss_pred eeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEecCc---CC
Confidence 4578889998888888865554333332 222111 11 123333321 1123344556799999986322 12
Q ss_pred cccCCeEEEEeCCCCCeEecCCCC-ccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCC
Q 011881 242 LTPLQSAEVFDPTTDAWSEVPSMP-FSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTN 320 (475)
Q Consensus 242 ~~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 320 (475)
...-..+.+-+..-..|+.+.-.. ..... .-.+..++.||+||-. -..+
T Consensus 361 ~~~GS~L~rs~d~Gq~w~slrfp~nvHhtn---------------lPFakvgD~l~mFgsE---------------RA~n 410 (670)
T 3ju4_A 361 DRLGSSLHRSRDIGQTWESLRFPHNVHHTT---------------LPFAKVGDDLIMFGSE---------------RAEN 410 (670)
T ss_dssp TSCCCEEEEESSTTSSCEEEECTTCCCSSC---------------CCEEEETTEEEEEEEC---------------SSTT
T ss_pred CCCcceeeeecccCCchhheeccccccccC---------------CCcceeCCEEEEEecc---------------cccc
Confidence 224467788888888898763111 11111 3456789999998742 2467
Q ss_pred ceEEcCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCCCCCCe-EEEEeC
Q 011881 321 SWVEMPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFADSESPY-LLSAFH 399 (475)
Q Consensus 321 ~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~-~~~~~~ 399 (475)
+|+.-.+. .|... .+ -+.|..-- .+--+..+.-+|..|...+-++.....-.+. ++++-+
T Consensus 411 EWE~G~pD-------~RY~a----~y-PRtF~~r~-------nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD 471 (670)
T 3ju4_A 411 EWEAGAPD-------DRYKA----SY-PRTFYARL-------NVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKD 471 (670)
T ss_dssp CSSTTCCC-------CCSSC----BC-CEEEEEEE-------ETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEET
T ss_pred ccccCCCc-------ccccc----cC-CceEEEEe-------ecccCCccceEEEEeecceeccccccccccceeEEEeC
Confidence 88754331 11110 00 11111100 0001223455687776555554443333333 455567
Q ss_pred CeEE-EEeecCC
Q 011881 400 GKLH-VLTKDAS 410 (475)
Q Consensus 400 ~~l~-v~GG~~~ 410 (475)
+-|| +|||++.
T Consensus 472 ~~lyyiFGgEd~ 483 (670)
T 3ju4_A 472 NYIYYMFGGEDH 483 (670)
T ss_dssp TEEEEEEEEBCS
T ss_pred CEEEEEecCccc
Confidence 7764 6787643
No 292
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=38.75 E-value=2.4e+02 Score=26.53 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=38.9
Q ss_pred ccceeEEEeCCEEEEEcCC--CC----------CCCcceEEEEeCCCCcEEeCC-CCCCccceeeeEEE-C-CEEEEEec
Q 011881 170 FCGCAIGAVDGCLYVLGGF--SR----------TSAMRCVRRYDPIANTWNEAT-SMSVGRAYCKTGIL-N-DKLYVVGG 234 (475)
Q Consensus 170 r~~~~~~~~~~~lyv~GG~--~~----------~~~~~~~~~yd~~t~~W~~~~-~~p~~R~~~~~~~~-~-~~iyv~GG 234 (475)
+..-.++.-+|.+|+-+-. .. ......+++||+. +.+.+. .+..| -..+.- + ..+||.--
T Consensus 166 ~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~p---NGia~spDg~~lYvadt 240 (355)
T 3sre_A 166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFA---NGINISPDGKYVYIAEL 240 (355)
T ss_dssp SEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSE---EEEEECTTSSEEEEEEG
T ss_pred CCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCccc---CcceECCCCCEEEEEeC
Confidence 4444555667888876431 11 1235689999984 333331 22111 122222 3 47888743
Q ss_pred eecCCCCcccCCeEEEEeCCC
Q 011881 235 VSRARGGLTPLQSAEVFDPTT 255 (475)
Q Consensus 235 ~~~~~~~~~~~~~~~~yd~~t 255 (475)
. ...+++||...
T Consensus 241 ~---------~~~I~~~~~~~ 252 (355)
T 3sre_A 241 L---------AHKIHVYEKHA 252 (355)
T ss_dssp G---------GTEEEEEEECT
T ss_pred C---------CCeEEEEEECC
Confidence 2 36888998764
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=37.37 E-value=2.9e+02 Score=26.56 Aligned_cols=143 Identities=16% Similarity=0.134 Sum_probs=72.1
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEE-ECCEEEEEeceecCCCCcccCCeEEEEeCCCCCe
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGI-LNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAW 258 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 258 (475)
+.||+.-.. ..+.++|+.+++.+.+.. ...+ -..+++ -+++|||.--.. ......+..++... .|
T Consensus 153 g~Lyv~D~~------~~I~~id~~~g~v~~~~~-~~~~-P~giavd~dG~lyVad~~~-----~~~~~gv~~~~~~~-~~ 218 (433)
T 4hw6_A 153 DDLYWVGQR------DAFRHVDFVNQYVDIKTT-NIGQ-CADVNFTLNGDMVVVDDQS-----SDTNTGIYLFTRAS-GF 218 (433)
T ss_dssp CEEEEECBT------SCEEEEETTTTEEEEECC-CCSC-EEEEEECTTCCEEEEECCS-----CTTSEEEEEECGGG-TT
T ss_pred CEEEEEeCC------CCEEEEECCCCEEEEeec-CCCC-ccEEEECCCCCEEEEcCCC-----CcccceEEEEECCC-Ce
Confidence 889998421 689999999888877643 1111 122333 255699875321 01123355555432 22
Q ss_pred E---ecCCCCccccCCCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCce-EEcCCCCCCC
Q 011881 259 S---EVPSMPFSRAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSW-VEMPIGMGEG 332 (475)
Q Consensus 259 ~---~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~ 332 (475)
. .++.+..| .++++. ++.||+.-... ....+||+.+++- +.+......
T Consensus 219 ~~~~~~~~~~~P------------------~giavd~~~G~lyv~d~~~-------~~V~~~d~~~g~~~~~~~~~~~~- 272 (433)
T 4hw6_A 219 TERLSLCNARGA------------------KTCAVHPQNGKIYYTRYHH-------AMISSYDPATGTLTEEEVMMDTK- 272 (433)
T ss_dssp CCEEEEEECSSB------------------CCCEECTTTCCEEECBTTC-------SEEEEECTTTCCEEEEEEECSCC-
T ss_pred eccccccccCCC------------------CEEEEeCCCCeEEEEECCC-------CEEEEEECCCCeEEEEEeccCCC-
Confidence 2 22222211 233332 68899853211 1248899987765 333211111
Q ss_pred CCCccCCCeEEEEECC-eEEEEcCCCCCCCCeEEEEeCC
Q 011881 333 WPARQAGTKLSVVLDG-ELYAFDPSSSLNSAKIKVYDQK 370 (475)
Q Consensus 333 ~p~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~v~~yd~~ 370 (475)
+.. ...++.-++ .||+..- ..+.|+++|..
T Consensus 273 -~~~---~~ia~dpdG~~LYvad~----~~~~I~~~~~d 303 (433)
T 4hw6_A 273 -GSN---FHIVWHPTGDWAYIIYN----GKHCIYRVDYN 303 (433)
T ss_dssp -SSC---EEEEECTTSSEEEEEET----TTTEEEEEEBC
T ss_pred -CCc---ccEEEeCCCCEEEEEeC----CCCEEEEEeCC
Confidence 111 111222344 5999853 23588887754
No 294
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=36.79 E-value=2.6e+02 Score=25.81 Aligned_cols=140 Identities=12% Similarity=0.076 Sum_probs=67.2
Q ss_pred CeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCceEE
Q 011881 246 QSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVE 324 (475)
Q Consensus 246 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~ 324 (475)
..+.++|+.+.+-........ .. ..++ .-++++.+.++.+ +..+++..++.-..
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~~---~V--------------~~v~fspdg~~l~s~s~~--------~~~~~~~~~~~~~~ 211 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETRG---EV--------------KDLHFSTDGKVVAYITGS--------SLEVISTVTGSCIA 211 (365)
T ss_dssp CEEEEEETTTTEEEEEEECSS---CC--------------CEEEECTTSSEEEEECSS--------CEEEEETTTCCEEE
T ss_pred CEEEEeECCCCcEEEEeCCCC---ce--------------EEEEEccCCceEEeccce--------eEEEEEeccCccee
Confidence 578899998876443211110 10 2222 3466666655422 23677777766543
Q ss_pred cCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCCcCccccCCC-CCCCeEEE-EeCCeE
Q 011881 325 MPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFAD-SESPYLLS-AFHGKL 402 (475)
Q Consensus 325 ~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~-~r~~~~~~-~~~~~l 402 (475)
....... ...-......-+++.++.++.+......++.+|............ .+.. .....+++ .-+|++
T Consensus 212 ~~~~~~~----~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~V~~~~~Spdg~~ 283 (365)
T 4h5i_A 212 RKTDFDK----NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSK----QVTNRFKGITSMDVDMKGEL 283 (365)
T ss_dssp EECCCCT----TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEE----EEESSCSCEEEEEECTTSCE
T ss_pred eeecCCC----CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeee----eecCCCCCeEeEEECCCCCc
Confidence 2221110 101111233467888887765443334677788776665443210 0111 11111222 237788
Q ss_pred EEEeecCCCCeeEEEecCC
Q 011881 403 HVLTKDASRNISILRADPR 421 (475)
Q Consensus 403 ~v~GG~~~~~~~v~~~d~~ 421 (475)
++.|+.++. |..+|+.
T Consensus 284 lasgs~D~~---V~iwd~~ 299 (365)
T 4h5i_A 284 AVLASNDNS---IALVKLK 299 (365)
T ss_dssp EEEEETTSC---EEEEETT
T ss_pred eEEEcCCCE---EEEEECC
Confidence 888776543 4445544
No 295
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=30.23 E-value=3e+02 Score=24.59 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=15.2
Q ss_pred eCCEEEEeccCCCCCceeccceEEEeCCCCc
Q 011881 291 YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNS 321 (475)
Q Consensus 291 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 321 (475)
-++++++.|+.++ ...+||..+.+
T Consensus 206 p~g~~l~s~~~dg-------~i~iwd~~~~~ 229 (319)
T 3frx_A 206 PDGTLIASAGKDG-------EIMLWNLAAKK 229 (319)
T ss_dssp TTSSEEEEEETTC-------EEEEEETTTTE
T ss_pred CCCCEEEEEeCCC-------eEEEEECCCCc
Confidence 3567777776553 23678887764
No 296
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=30.20 E-value=3.2e+02 Score=24.89 Aligned_cols=144 Identities=10% Similarity=-0.010 Sum_probs=79.8
Q ss_pred eCCEEEEEcCCCCCCCcceEEEEeCCCCcEEeC--CCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeC
Q 011881 178 VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEA--TSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDP 253 (475)
Q Consensus 178 ~~~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~--~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 253 (475)
.++.||+.-.. ...++++|+....-+.+ ..+..|+ .+++. ++.||+.--. ....++++++
T Consensus 89 ~~g~ly~~d~~-----~~~I~~~~~dG~~~~~l~~~~~~~P~---giavdp~~g~ly~td~~--------~~~~I~r~~~ 152 (318)
T 3sov_A 89 LGEKLYWTDSE-----TNRIEVSNLDGSLRKVLFWQELDQPR---AIALDPSSGFMYWTDWG--------EVPKIERAGM 152 (318)
T ss_dssp TTTEEEEEETT-----TTEEEEEETTSCSCEEEECSSCSSEE---EEEEEGGGTEEEEEECS--------SSCEEEEEET
T ss_pred CCCeEEEEECC-----CCEEEEEECCCCcEEEEEeCCCCCcc---EEEEeCCCCEEEEEecC--------CCCEEEEEEc
Confidence 47899987422 35788998876543333 2333332 33343 6899987410 1357899988
Q ss_pred CCCCeEec--CCCCccccCCCCccccccccccceeeEEE--eCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCC
Q 011881 254 TTDAWSEV--PSMPFSRAQGLPNAFFADMLKPIATGMTS--YMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGM 329 (475)
Q Consensus 254 ~t~~W~~~--~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 329 (475)
.-..=+.+ ..+..| .+++. .+++||+.-... ...+++|+....=+.+.. .
T Consensus 153 dG~~~~~~~~~~l~~P------------------nglavd~~~~~lY~aD~~~-------~~I~~~d~dG~~~~~~~~-~ 206 (318)
T 3sov_A 153 DGSSRFIIINSEIYWP------------------NGLTLDYEEQKLYWADAKL-------NFIHKSNLDGTNRQAVVK-G 206 (318)
T ss_dssp TSCSCEEEECSSCSCE------------------EEEEEETTTTEEEEEETTT-------TEEEEEETTSCSCEEEEC-S
T ss_pred CCCCeEEEEECCCCCc------------------cEEEEeccCCEEEEEECCC-------CEEEEEcCCCCceEEEec-C
Confidence 64332222 122211 34444 378999964321 123788886544333322 1
Q ss_pred CCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 330 GEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 330 ~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
.. ..+. + +++.++.||+..- ..+.|.++|+.+.+
T Consensus 207 ~~--~~P~-g---lav~~~~lywtd~----~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 207 SL--PHPF-A---LTLFEDILYWTDW----STHSILACNKYTGE 240 (318)
T ss_dssp CC--SCEE-E---EEEETTEEEEEET----TTTEEEEEETTTCC
T ss_pred CC--CCce-E---EEEeCCEEEEEec----CCCeEEEEECCCCC
Confidence 11 1121 1 5678899999843 23689999986554
No 297
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=28.74 E-value=1.6e+02 Score=28.14 Aligned_cols=75 Identities=13% Similarity=0.008 Sum_probs=41.2
Q ss_pred CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccc-cCCCCccccccccccceeeEEEeCC--EEEEeccCC
Q 011881 226 NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSR-AQGLPNAFFADMLKPIATGMTSYMG--RLCVPQSLY 302 (475)
Q Consensus 226 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r-~~~~~~~~~~~~~~~~~~~~~~~~~--~iyv~GG~~ 302 (475)
++++||.-+..........-+.++++|.+|.+-..- ++.+. .. ...+.-++ .+|+..+.+
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~--i~vg~~~~---------------~lavs~D~~~~ly~tn~~~ 353 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK--FEMGHEID---------------SINVSQDEKPLLYALSTGD 353 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE--EEEEEEEC---------------EEEECSSSSCEEEEEETTT
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEE--EECCCCcc---------------eEEECCCCCeEEEEEcCCC
Confidence 679999754221111122347899999999875432 22221 11 22233455 477743322
Q ss_pred CCCceeccceEEEeCCCCceEE
Q 011881 303 SWPFFVDVGGEIYDPDTNSWVE 324 (475)
Q Consensus 303 ~~~~~~~~~~~~yd~~~~~W~~ 324 (475)
....+||..+++-..
T Consensus 354 -------~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 354 -------KTLYIHDAESGEELR 368 (386)
T ss_dssp -------TEEEEEETTTCCEEE
T ss_pred -------CeEEEEECCCCcEEE
Confidence 224789999988543
No 298
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=28.62 E-value=2.7e+02 Score=25.98 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=19.6
Q ss_pred CCEEEEEeceecCCCCcccCCeEEEEeCCCCCe
Q 011881 226 NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAW 258 (475)
Q Consensus 226 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 258 (475)
++++||..............+.+.++|..+.+=
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v 310 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT 310 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEE
Confidence 578999764211101111246899999988754
No 299
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=27.09 E-value=5e+02 Score=26.22 Aligned_cols=17 Identities=18% Similarity=-0.066 Sum_probs=11.6
Q ss_pred CeEEEEeCCCCC-eEecC
Q 011881 246 QSAEVFDPTTDA-WSEVP 262 (475)
Q Consensus 246 ~~~~~yd~~t~~-W~~~~ 262 (475)
..+.++|..+.+ ...+.
T Consensus 228 ~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 228 ISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp EEEEEEESSSSCCCEECC
T ss_pred eEEEEEECCCCceeEEee
Confidence 378889988876 34443
No 300
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=26.87 E-value=51 Score=20.71 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=18.2
Q ss_pred cCCCCCCCCCCCHHHHHHHhccCCh
Q 011881 36 YEDGLRLIPSLPDELSIQILARVPR 60 (475)
Q Consensus 36 ~~~~~~~~~~LP~dl~~~iL~~lp~ 60 (475)
..-++.....||.||.+++|+.-..
T Consensus 14 ~~VD~eVF~~LP~dIQ~Ells~~~~ 38 (48)
T 2kwv_A 14 EGVDQEVFKQLPADIQEEILSGKSR 38 (48)
T ss_dssp TTCCGGGTTTSCHHHHHHHTTCCCS
T ss_pred CCCCHHHHHHCcHHHHHHHHhcchH
Confidence 3345566778999999999886553
No 301
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=26.27 E-value=5.6e+02 Score=26.51 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=36.7
Q ss_pred CCEEEEEcCCCC----CCCcceEEEEeCCCCcEEeCCCCCCc----cceeeeEEE----CCEEEEEec
Q 011881 179 DGCLYVLGGFSR----TSAMRCVRRYDPIANTWNEATSMSVG----RAYCKTGIL----NDKLYVVGG 234 (475)
Q Consensus 179 ~~~lyv~GG~~~----~~~~~~~~~yd~~t~~W~~~~~~p~~----R~~~~~~~~----~~~iyv~GG 234 (475)
++.+|+..+-.. ......+++++-...+|+.+.+.|.. +.+++...+ .+.||+.+.
T Consensus 254 ~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~~~~~~~~~i~v~p~~~~~ly~~~~ 321 (737)
T 2cn3_A 254 NGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNRFCFAGLAVDRQNPDIIMVTSM 321 (737)
T ss_dssp TSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTSTTCCSEEEEEEECTTCTTCEEEEEE
T ss_pred CCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCCCCcccccccccEEEcCCCCCEEEEEec
Confidence 788998654211 11346799999999999999776542 444443333 267888764
No 302
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=25.01 E-value=2.8e+02 Score=28.88 Aligned_cols=154 Identities=8% Similarity=0.006 Sum_probs=77.2
Q ss_pred cceEEEEeCCC--CcEEeCCCCCCccceeeeEEECCEEEEEeceecCC-CCcccCCeEEEEeCCC--------CCeEe-c
Q 011881 194 MRCVRRYDPIA--NTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRAR-GGLTPLQSAEVFDPTT--------DAWSE-V 261 (475)
Q Consensus 194 ~~~~~~yd~~t--~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~~~yd~~t--------~~W~~-~ 261 (475)
.+.++..|... .+|.++ .+| +...-....++++|+....+-.. +.......+...|..+ ..|+. +
T Consensus 268 ~~~~~~~~~~~~~~~~~~l-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 344 (711)
T 4hvt_A 268 NYDNYILDTKYKNLKLQKI-NMP--SDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF 344 (711)
T ss_dssp CEEEEEEECSSSSCEEEEC-CSC--TTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE
T ss_pred ceeEEEEcCCCCCCcceEe-ecC--CcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE
Confidence 46778777653 668777 233 32212346699999976432100 0112345677887654 46886 4
Q ss_pred CCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcC-CCCCCCCCCccCCC
Q 011881 262 PSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMP-IGMGEGWPARQAGT 340 (475)
Q Consensus 262 ~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~p~~~~~~ 340 (475)
++-..... ..+...++.|++..-.++. ....++|+.+++|.... ..+ |.. +.
T Consensus 345 ~~~~~~~l----------------~~~~~~~~~l~~~~~~~~~-----~~l~~~~~~~g~~~~~~~i~l----p~~--~~ 397 (711)
T 4hvt_A 345 TPTANEVF----------------NFISTTKDRVFLATYDNVV-----AKVVTFTLENEQWTKPVVLKL----PYQ--NA 397 (711)
T ss_dssp CCCTTEEE----------------EEEEECSSCEEEEEEETTE-----EEEEEECEETTEECCCEEECC----CST--TC
T ss_pred CCCCCCeE----------------EEEEEECCEEEEEEEECCE-----EEEEEEECCCCceEEEeccCC----CCC--eE
Confidence 43322111 3445556777664321111 11267888888884321 111 111 11
Q ss_pred eEEEE--E-CCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCC
Q 011881 341 KLSVV--L-DGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIG 379 (475)
Q Consensus 341 ~~~~~--~-~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~ 379 (475)
..... . ++.+++... +......++.||.. ++++.+..
T Consensus 398 ~~~~~~~~~~~~~~~~~s-s~~~P~~~~~~d~~-~~~~~l~~ 437 (711)
T 4hvt_A 398 IFGMSSYEEEEEALITIE-NSIVPPTIYLWVKT-HELKIIRK 437 (711)
T ss_dssp EEEEECCTTCSCEEEEEE-CSSSCCEEEEECTT-SCEEEEEC
T ss_pred EEEEeecCcCCEEEEEEe-cCCCCCEEEEEeCC-CcEEEEec
Confidence 11111 1 233444322 22233689999988 77776643
No 303
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=24.41 E-value=4.3e+02 Score=24.53 Aligned_cols=108 Identities=12% Similarity=0.066 Sum_probs=55.0
Q ss_pred CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCC
Q 011881 226 NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSW 304 (475)
Q Consensus 226 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~ 304 (475)
++.+++.|+. ...+.+||..+.+-...-..+..... + .+++ .-++++.+.|+.++.
T Consensus 181 ~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~h~~~-------------v-~~~~~s~~~~~l~s~~~dg~ 237 (437)
T 3gre_A 181 EKSLLVALTN---------LSRVIIFDIRTLERLQIIENSPRHGA-------------V-SSICIDEECCVLILGTTRGI 237 (437)
T ss_dssp SCEEEEEEET---------TSEEEEEETTTCCEEEEEECCGGGCC-------------E-EEEEECTTSCEEEEEETTSC
T ss_pred CCCEEEEEeC---------CCeEEEEeCCCCeeeEEEccCCCCCc-------------e-EEEEECCCCCEEEEEcCCCe
Confidence 4677777764 25899999988653321111100111 0 2222 225677777765532
Q ss_pred CceeccceEEEeCCCCceEEcCCCCCCCCCCccCCCeEEEE-----ECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 305 PFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVV-----LDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 305 ~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~-----~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
..+||..+++....-. ... . .....++. .++.+++.|+.+ +.|.+||..+.+
T Consensus 238 -------i~iwd~~~~~~~~~~~-~~~----~-~~v~~~~~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~ 294 (437)
T 3gre_A 238 -------IDIWDIRFNVLIRSWS-FGD----H-APITHVEVCQFYGKNSVIVVGGSSK----TFLTIWNFVKGH 294 (437)
T ss_dssp -------EEEEETTTTEEEEEEB-CTT----C-EEEEEEEECTTTCTTEEEEEEESTT----EEEEEEETTTTE
T ss_pred -------EEEEEcCCccEEEEEe-cCC----C-CceEEEEeccccCCCccEEEEEcCC----CcEEEEEcCCCc
Confidence 3789988766533211 000 0 00010111 135566666532 579999998765
No 304
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=22.86 E-value=1.3e+02 Score=28.80 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=43.0
Q ss_pred eCCEEEEEcC---CC-CCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEE-ECC--EEEEEeceecCCCCcccCCeEEE
Q 011881 178 VDGCLYVLGG---FS-RTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGI-LND--KLYVVGGVSRARGGLTPLQSAEV 250 (475)
Q Consensus 178 ~~~~lyv~GG---~~-~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~-~~~--~iyv~GG~~~~~~~~~~~~~~~~ 250 (475)
-++++|+.-+ .. .....+.++++|+.|++-.. .++.+..-.++++ -++ .||+.-+. .+++.+
T Consensus 290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~--~i~vg~~~~~lavs~D~~~~ly~tn~~---------~~~VsV 358 (386)
T 3sjl_D 290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA--KFEMGHEIDSINVSQDEKPLLYALSTG---------DKTLYI 358 (386)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE--EEEEEEEECEEEECSSSSCEEEEEETT---------TTEEEE
T ss_pred CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE--EEECCCCcceEEECCCCCeEEEEEcCC---------CCeEEE
Confidence 3688999632 11 12345789999999877543 2222222223444 344 47776442 368999
Q ss_pred EeCCCCCeE
Q 011881 251 FDPTTDAWS 259 (475)
Q Consensus 251 yd~~t~~W~ 259 (475)
||..+.+-.
T Consensus 359 iD~~t~k~~ 367 (386)
T 3sjl_D 359 HDAESGEEL 367 (386)
T ss_dssp EETTTCCEE
T ss_pred EECCCCcEE
Confidence 999998744
No 305
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=22.84 E-value=4.1e+02 Score=23.66 Aligned_cols=61 Identities=10% Similarity=-0.094 Sum_probs=34.5
Q ss_pred CcceEEEEeCCCCcEEeCCCCCCccceeeeEEE-CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeEecCC
Q 011881 193 AMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL-NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPS 263 (475)
Q Consensus 193 ~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 263 (475)
....++++|..+.+-+.+ .. ....... +++..++.....+ .....++++|..+++...+..
T Consensus 41 ~~~~l~~~d~~~~~~~~l-----~~-~~~~~~SpDg~~la~~~~~~~----~~~~~l~~~~~~~g~~~~l~~ 102 (347)
T 2gop_A 41 YENTIVIENLKNNARRFI-----EN-ATMPRISPDGKKIAFMRANEE----KKVSEIWVADLETLSSKKILE 102 (347)
T ss_dssp EEEEEEEEETTTCCEEEE-----ES-CEEEEECTTSSEEEEEEEETT----TTEEEEEEEETTTTEEEEEEE
T ss_pred ccceEEEEeCCCCceEEc-----cc-CCCeEECCCCCEEEEEEeccC----CCcceEEEEECCCCceEEEEc
Confidence 356799999998876665 11 1122222 5544444433211 013468899998887666543
No 306
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=21.72 E-value=2.3e+02 Score=26.23 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=39.5
Q ss_pred eCCEEEEEcCCCC-----CCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEE
Q 011881 178 VDGCLYVLGGFSR-----TSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEV 250 (475)
Q Consensus 178 ~~~~lyv~GG~~~-----~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~ 250 (475)
-++++|+....++ ....+.++++|+.+.+= +..++... -.+++.. +.+||+.++ +.+.+
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~--v~~i~~~~-p~~ia~spdg~~l~v~n~-----------~~v~v 329 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR--VARIPGRD-ALSMTIDQQRNLMLTLDG-----------GNVNV 329 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE--EEEEECTT-CCEEEEETTTTEEEEECS-----------SCEEE
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcE--EEEEecCC-eeEEEECCCCCEEEEeCC-----------CeEEE
Confidence 3588999754211 12356899999988753 33333333 3344443 446776532 57889
Q ss_pred EeCCCC
Q 011881 251 FDPTTD 256 (475)
Q Consensus 251 yd~~t~ 256 (475)
||..+.
T Consensus 330 ~D~~t~ 335 (361)
T 2oiz_A 330 YDISQP 335 (361)
T ss_dssp EECSSS
T ss_pred EECCCC
Confidence 999886
No 307
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=21.18 E-value=5e+02 Score=24.09 Aligned_cols=176 Identities=10% Similarity=0.091 Sum_probs=82.4
Q ss_pred cceEEEEeCC---CCc--EEe-CCCCCCc-------cc-eeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 194 MRCVRRYDPI---ANT--WNE-ATSMSVG-------RA-YCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 194 ~~~~~~yd~~---t~~--W~~-~~~~p~~-------R~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
...+.+||+. |++ |.. ++..... +. .+.-.++ +|.+||.+-.. ...++++|+....
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~--------~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG--------MPAIARVSADGKT 170 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES--------SCEEEEECTTSCC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC--------CCeEEEEeCCCCE
Confidence 5679999988 443 542 2221111 22 2222333 68999987541 1578899987543
Q ss_pred ---eEecCCCCccccCCCCccccccccccceeeEEEe--CCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCC-CC
Q 011881 258 ---WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY--MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGM-GE 331 (475)
Q Consensus 258 ---W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~ 331 (475)
|-.-.+....+.+. .+++.. +..|++..+ .+ ...+||..+-....++... ..
T Consensus 171 ~~~~~~~~~~~~~~~G~--------------nGIv~~pdg~~Liv~~~-~g-------~L~~fD~~~pv~~~v~~~~~G~ 228 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGY--------------SGITFDPHSNKLIAFGG-PR-------ALTAFDVSKPYAWPEPVKINGD 228 (334)
T ss_dssp EEEEEECCCCSSSCCSC--------------SEEEEETTTTEEEEESS-SS-------SEEEEECSSSSCCCEECEESSC
T ss_pred EeeeeecCCCcccccCc--------------ceEEEeCCCCEEEEEcC-CC-------eEEEEcCCCCcceeecccccCC
Confidence 54322222223321 456665 445666554 22 1278887743221121100 00
Q ss_pred CCCCccCCCe--EEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEcCC--cCccccCCCCCCCeEEEE----eCCeEE
Q 011881 332 GWPARQAGTK--LSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVVIG--KVPIRDFADSESPYLLSA----FHGKLH 403 (475)
Q Consensus 332 ~~p~~~~~~~--~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~--~~p~~~~~~~r~~~~~~~----~~~~l~ 403 (475)
.....+.. ...-.+|+++++.-.. +.++.+--..+ |+...- ..|. .+. .+...+.+. .+++||
T Consensus 229 --~~~~~~~dgilp~~~~G~vllV~~~~----~~~~~l~S~Dg-W~sa~~~g~~~~-~~~-~~g~tt~t~~~~~~~~~iY 299 (334)
T 2p9w_A 229 --FGTLSGTEKIVTVPVGNESVLVGARA----PYAISFRSWDN-WKSANIKKTKRS-ELQ-NSGFTAVADYYQGSEQGLY 299 (334)
T ss_dssp --CCCCTTEEEEEEEEETTEEEEEEEET----TEEEEEECSST-TSEEEEEEEECG-GGG-SSCEEEEEEEEETTEEEEE
T ss_pred --cccccCcccccccccCCEEEEEEcCC----CCEEEEECCCC-cceeEEeeeecC-ccc-cCceeEEEEeccccCCeEE
Confidence 00111111 1234789885553211 23344434444 886421 2221 111 222223333 689999
Q ss_pred EEeec
Q 011881 404 VLTKD 408 (475)
Q Consensus 404 v~GG~ 408 (475)
++.+.
T Consensus 300 vv~~~ 304 (334)
T 2p9w_A 300 AVSAF 304 (334)
T ss_dssp EEECC
T ss_pred EEeee
Confidence 98853
No 308
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=21.13 E-value=6.2e+02 Score=25.14 Aligned_cols=150 Identities=11% Similarity=0.103 Sum_probs=73.5
Q ss_pred EEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCCCeE
Q 011881 182 LYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWS 259 (475)
Q Consensus 182 lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~ 259 (475)
+++.|+.++ .+..||..+.+... .+..-.....++.+ ++++++.|+.+ ..+.+||..+++-.
T Consensus 162 ~l~s~s~D~-----~v~lwd~~~~~~~~--~l~~H~~~V~~v~fspdg~~las~s~D---------~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 162 RIISGSDDN-----TVAIFEGPPFKFKS--TFGEHTKFVHSVRYNPDGSLFASTGGD---------GTIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEEETTS-----CEEEEETTTBEEEE--EECCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTCCEE
T ss_pred EEEEEeCCC-----eEEEEECCCCeEee--eeccccCceEEEEECCCCCEEEEEECC---------CcEEEEECCCCcEe
Confidence 466666543 56777766544322 12111111222333 67777777742 57889998877643
Q ss_pred ecC-CCCccccCCCCccccccccccceeeEE-EeCCEEEEeccCCCCCceeccceEEEeCCCCceEEcCCCCCCCCCCcc
Q 011881 260 EVP-SMPFSRAQGLPNAFFADMLKPIATGMT-SYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQ 337 (475)
Q Consensus 260 ~~~-~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~ 337 (475)
..- ........+.. .+ .+++ .-+++..+.|+.++ ....+|..+.+....-. ... ..
T Consensus 226 ~~~~~~~~~~~~h~~---------~V-~~v~~spdg~~l~s~s~D~-------~v~lWd~~~~~~~~~~~-~~~----~~ 283 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSG---------SV-FGLTWSPDGTKIASASADK-------TIKIWNVATLKVEKTIP-VGT----RI 283 (611)
T ss_dssp EECBCTTSSSCSSSS---------CE-EEEEECTTSSEEEEEETTS-------EEEEEETTTTEEEEEEE-CCS----SG
T ss_pred eeeccccccccccCC---------CE-EEEEECCCCCEEEEEeCCC-------eEEEEeCCCCceeeeec-CCC----Cc
Confidence 221 10000001000 00 2222 23677777776553 23788998877654211 110 11
Q ss_pred CCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCc
Q 011881 338 AGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDT 373 (475)
Q Consensus 338 ~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 373 (475)
......+..++..++.++.+ ..+..||+.+.+
T Consensus 284 ~~~~~~~~~~~~~l~s~s~d----~~i~~~~~~~~~ 315 (611)
T 1nr0_A 284 EDQQLGIIWTKQALVSISAN----GFINFVNPELGS 315 (611)
T ss_dssp GGCEEEEEECSSCEEEEETT----CCEEEEETTTTE
T ss_pred cceeEEEEEcCCEEEEEeCC----CcEEEEeCCCCC
Confidence 11111344466666666533 468888988765
No 309
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=20.76 E-value=1.2e+02 Score=28.41 Aligned_cols=66 Identities=12% Similarity=-0.045 Sum_probs=31.4
Q ss_pred EEECCEEEEEeceecCCCCcccCCeEEEEeCCCCC--eEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEecc
Q 011881 223 GILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA--WSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQS 300 (475)
Q Consensus 223 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG 300 (475)
++.++.||+.+. ...+..+|..+++ |+.-. .+.. ...++.++++|+.++
T Consensus 6 ~v~~~~v~~gs~----------dg~v~a~d~~tG~~~W~~~~---~~~~----------------s~p~~~~g~~~v~~s 56 (369)
T 2hz6_A 6 TLPETLLFVSTL----------DGSLHAVSKRTGSIKWTLKE---DPVL----------------QVPTHVEEPAFLPDP 56 (369)
T ss_dssp --CTTEEEEEET----------TSEEEEEETTTCCEEEEEEC---CCSC----------------CCC-----CCEEECT
T ss_pred eeeCCEEEEEcC----------CCEEEEEECCCCCEEEEecC---CCce----------------ecceEcCCCEEEEeC
Confidence 445777777543 2478999988875 87543 1111 222345677777664
Q ss_pred CCCCCceeccceEEEeCCCC--ceEE
Q 011881 301 LYSWPFFVDVGGEIYDPDTN--SWVE 324 (475)
Q Consensus 301 ~~~~~~~~~~~~~~yd~~~~--~W~~ 324 (475)
.++ ...++|.+++ .|..
T Consensus 57 ~dg-------~l~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 57 NDG-------SLYTLGSKNNEGLTKL 75 (369)
T ss_dssp TTC-------CEEEC-----CCSEEC
T ss_pred CCC-------EEEEEECCCCceeeee
Confidence 332 2377887654 4653
No 310
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=20.20 E-value=8.3e+02 Score=26.27 Aligned_cols=98 Identities=14% Similarity=-0.038 Sum_probs=52.3
Q ss_pred CeEEEEeCCCCCeEecCCCCccccCCCCccccccccccceeeEEEeCCEEEEeccCCCCCceeccceE-EEeCCCCceEE
Q 011881 246 QSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGE-IYDPDTNSWVE 324 (475)
Q Consensus 246 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-~yd~~~~~W~~ 324 (475)
..++.+|..+..-..+...+..+.. ..... +++.+++++.. ...+ .||..+++-..
T Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~~---------------~~~~s-dg~~l~~~s~~-------~~l~~~~d~~~~~~~~ 373 (1045)
T 1k32_A 317 GQAFIQDVSGTYVLKVPEPLRIRYV---------------RRGGD-TKVAFIHGTRE-------GDFLGIYDYRTGKAEK 373 (1045)
T ss_dssp TEEEEECTTSSBEEECSCCSCEEEE---------------EECSS-SEEEEEEEETT-------EEEEEEEETTTCCEEE
T ss_pred CEEEEEcCCCCceEEccCCCcceEE---------------eeeEc-CCCeEEEEECC-------CceEEEEECCCCCceE
Confidence 4678888877766555432221111 12223 55544443321 2336 78988877666
Q ss_pred cCCCCCCCCCCccCCCeEEEEECCeEEEEcCCCCCCCCeEEEEeCCCCcEEEc
Q 011881 325 MPIGMGEGWPARQAGTKLSVVLDGELYAFDPSSSLNSAKIKVYDQKEDTWKVV 377 (475)
Q Consensus 325 ~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 377 (475)
+.. .. .. -...+..-+++.++++.. ...++++|+++++-..+
T Consensus 374 l~~-~~-----~~-~~~~~~SpDG~~la~~~~----~~~v~~~d~~tg~~~~~ 415 (1045)
T 1k32_A 374 FEE-NL-----GN-VFAMGVDRNGKFAVVAND----RFEIMTVDLETGKPTVI 415 (1045)
T ss_dssp CCC-CC-----CS-EEEEEECTTSSEEEEEET----TSEEEEEETTTCCEEEE
T ss_pred ecC-Cc-----cc-eeeeEECCCCCEEEEECC----CCeEEEEECCCCceEEe
Confidence 542 11 11 111123346776666653 25899999998876665
No 311
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=20.11 E-value=2.5e+02 Score=25.98 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=38.9
Q ss_pred CEEEEEcCCCCCCCcceEEEEeCCCCcEEeCCCCCCccceeeeEEE--CCEEEEEeceecCCCCcccCCeEEEEeCCCCC
Q 011881 180 GCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGIL--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDA 257 (475)
Q Consensus 180 ~~lyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 257 (475)
..+|+.-........+.+++||+.+.+-.. .++..... .++.. +.++|+..-...........+.+.+||+.+.+
T Consensus 16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~--~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~ 92 (361)
T 2oiz_A 16 NRIYVMDSVFMHLTESRVHVYDYTNGKFLG--MVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT 92 (361)
T ss_dssp GEEEEEECCGGGGGGCEEEEEETTTCCEEE--EEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred CEEEEECCCCCccccCeEEEEECCCCeEEE--EecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence 467776422111123578999988876532 23333322 33333 45789876321110000123578999998765
Done!