BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011883
         (475 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WNB|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase In
           Complex With Disaccharide And Cmp
 pdb|2WNF|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase In
           Complex With Gal-Beta-1-3galnac-Ortho-Nitrophenol
          Length = 298

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 32/177 (18%)

Query: 184 KKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAP-------VNQRYAKHVGLKRDFRLVV 236
           ++CAVVGNSG+L ++ +G +IDSHD V+R N+AP       V  +   H      FR + 
Sbjct: 98  RRCAVVGNSGNLKESYYGPQIDSHDFVLRXNKAPTEGFEADVGSKTTHHFVYPESFRELA 157

Query: 237 RGAARNMVAILKGSTDEVLIIKSVTHKDFNAMIKSIPNPVYL-----------FQGIVLR 285
           +  +  +V     +TD   +I + T    +     +P  + +           F   V  
Sbjct: 158 QEVSXILVPF--KTTDLEWVISATTTGRISHTYVPVPAKIKVKKEKILIYHPAFIKYVFD 215

Query: 286 RGAKG------TGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQG 336
           R  +G      TG+ S+  +L +CD VD+YGF  D     W  Y+      +NP  G
Sbjct: 216 RWLQGHGRYPSTGILSVIFSLHICDEVDLYGFGAD-SKGNWHHYWE-----NNPSAG 266


>pdb|2WML|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase
          Length = 298

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 32/177 (18%)

Query: 184 KKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAP-------VNQRYAKHVGLKRDFRLVV 236
           ++CAVVGNSG+L ++ +G +IDSHD V+R N+AP       V  +   H      FR + 
Sbjct: 98  RRCAVVGNSGNLKESYYGPQIDSHDFVLRXNKAPTEGFEADVGSKTTHHFVYPESFRELA 157

Query: 237 RGAARNMVAILKGSTDEVLIIKSVTHKDFNAMIKSIPNPVYL-----------FQGIVLR 285
           +  +  +V     +TD   +I + T    +     +P  + +           F   V  
Sbjct: 158 QEVSXILVPF--KTTDLEWVISATTTGRISHTYVPVPAKIKVKKEKILIYHPAFIKYVFD 215

Query: 286 RGAKG------TGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQG 336
           R  +G      TG+ S+  +L +CD VD+YGF  D     W  Y+      +NP  G
Sbjct: 216 RWLQGHGRYPSTGILSVIFSLHICDEVDLYGFGAD-SKGNWHHYWE-----NNPSAG 266


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,281,663
Number of Sequences: 62578
Number of extensions: 586332
Number of successful extensions: 1111
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1107
Number of HSP's gapped (non-prelim): 2
length of query: 475
length of database: 14,973,337
effective HSP length: 102
effective length of query: 373
effective length of database: 8,590,381
effective search space: 3204212113
effective search space used: 3204212113
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)