Query 011883
Match_columns 475
No_of_seqs 258 out of 695
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:16:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00777 Glyco_transf_29: Glyc 100.0 4E-51 8.7E-56 402.6 9.9 190 163-354 34-265 (266)
2 KOG2692 Sialyltransferase [Car 100.0 3.4E-42 7.4E-47 355.9 16.8 185 168-354 136-369 (376)
3 PF06002 CST-I: Alpha-2,3-sial 95.7 0.063 1.4E-06 54.9 9.6 162 184-352 2-210 (291)
4 PF01973 MAF_flag10: Protein o 74.9 8.2 0.00018 35.6 6.2 122 184-311 25-163 (170)
5 PF13544 N_methyl_2: Type IV p 32.6 44 0.00096 23.2 2.4 31 1-31 1-31 (31)
6 PRK14094 psbM photosystem II r 25.4 36 0.00077 26.4 1.0 24 19-43 12-41 (50)
7 PHA03164 hypothetical protein; 23.4 62 0.0013 27.6 2.1 30 13-42 53-82 (88)
8 PF11125 DUF2830: Protein of u 23.2 1.4E+02 0.003 23.4 3.8 24 11-34 10-33 (54)
9 COG5213 FIP1 Polyadenylation f 19.6 1.2E+02 0.0026 30.7 3.6 41 191-231 182-222 (266)
10 PF13334 DUF4094: Domain of un 19.4 97 0.0021 27.0 2.6 16 19-34 5-20 (95)
No 1
>PF00777 Glyco_transf_29: Glycosyltransferase family 29 (sialyltransferase); InterPro: IPR001675 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 29 (GT29 from CAZY) comprises enzymes with a number of known activities; sialyltransferase (2.4.99 from EC), beta-galactosamide alpha-2,6-sialyltransferase (2.4.99.1 from EC), alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase (2.4.99.3 from EC), beta-galactoside alpha-2,3-sialyltransferase (2.4.99.4 from EC), N-acetyllactosaminide alpha-2,3-sialyltransferase (2.4.99.6 from EC), alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase (2.4.99.8 from EC); lactosylceramide alpha-2,3-sialyltransferase (2.4.99.9 from EC). These enzymes use a nucleotide monophosphosugar as the donor (CMP-NeuA) instead of a nucleotide diphosphosugar. Sialyltransferase may be responsible for the synthesis of the sequence NEUAC-Alpha-2,3-GAL-Beta-1,3-GALNAC-, found on sugar chains O-linked to thr or ser and also as a terminal sequenec on certain gagnliosides. These enzymes catalyse sialyltransfer reactions during glycosylation, and are type II membrane proteins.; GO: 0008373 sialyltransferase activity, 0006486 protein glycosylation, 0030173 integral to Golgi membrane; PDB: 2WNF_A 2WML_A 2WNB_A.
Probab=100.00 E-value=4e-51 Score=402.59 Aligned_cols=190 Identities=32% Similarity=0.450 Sum_probs=109.5
Q ss_pred hhHHHhhhcCCCCCCCCCCC----cceEEEEcCCCCCCCCcCCcccccccceeecCCCcccccccCCCCccceeEeecch
Q 011883 163 LCEEHLNLILPAKPPFRPRQ----FKKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRG 238 (475)
Q Consensus 163 ~~~~~L~~llP~~~P~~~~~----c~rCAVVGNSGiL~gS~~G~eIDshD~ViR~N~APv~~GyE~DVGsKTt~r~~~~~ 238 (475)
.+.+.|..++|..+|+...+ |+|||||||||||+||+||+|||+||||||||.||+ +|||+|||+|||++++|++
T Consensus 34 ~i~~~l~~l~~~~~p~~~~~~~~~~~~CAVVGNsGiL~~S~~G~eID~~D~ViR~N~aP~-~gfe~DVG~kT~~~~~n~~ 112 (266)
T PF00777_consen 34 KISKELYKLLPESSPFSLKHFKRRCRTCAVVGNSGILLGSGCGKEIDSHDFVIRMNLAPV-KGFEKDVGSKTTLRTMNPS 112 (266)
T ss_dssp -HHHHHHHHTTT-S-S---TTTTG--EEEEE--BGGGTT---HHHHHTSSEEEEETT----TT-HHHH-S--SEEEEBTT
T ss_pred hHHHHHHHhCcccCccccccccCCCCeEEEEcCChHhccCccccccccCeeEEecCCccc-cccccccCccccccccChh
Confidence 34677899999888875555 999999999999999999999999999999999997 8999999999999999999
Q ss_pred hhhhHHHhhcCCCCeEEEEec----------cchhhH--------------HHHHh-hcCCchhhhhh---hhh---ccC
Q 011883 239 AARNMVAILKGSTDEVLIIKS----------VTHKDF--------------NAMIK-SIPNPVYLFQG---IVL---RRG 287 (475)
Q Consensus 239 s~~~~~~~l~~~~d~~~iik~----------~~~~d~--------------~~~ik-~i~nP~~l~~~---~~~---~~~ 287 (475)
++...... .........+.. +..... ....+ .+.||.++... |.. ...
T Consensus 113 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (266)
T PF00777_consen 113 SLQRRYNL-LDKDTFLVLLPFKGSDLVWLPAFSSKKNTRKSFWAYKALEKKYPNQKVRILHPEFLRYIWRFWLRRGGRGN 191 (266)
T ss_dssp B----------TT-EEEE--SSHHHHHHHHHHTTT-----BSSSB--S-----GGGEEEB-HHHHHHHHHHTSTT---SS
T ss_pred Hhhhhccc-cccccceeccccccchhhhhhhhhccccccccccchhhhhhccCcceeeecCHHHHhhHHHHhhhhhcccc
Confidence 98432121 111111111110 000000 00001 46788876532 221 234
Q ss_pred CCCcHHHHHHHHHhcCCeEEEeeeeeCCCCCccccccCCC-------CCCCCchhHHHHHHHHHhcCcEEEEcc
Q 011883 288 AKGTGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTP-------RKGHNPLQGRAYYQLLECLGVIRIHSP 354 (475)
Q Consensus 288 ~PSTG~l~l~lALhlCDeV~lYGF~~d~~y~~~~HYyd~~-------~~~Hd~~~E~~l~~~Lh~~GvI~Lh~p 354 (475)
+||||++++++||++||||+||||||..+...++||||+. ...|+|..|+++|++||++|+|++|++
T Consensus 192 ~pSTG~~~~~~Al~~CD~V~lYGF~p~~~~~~~~HYyd~~~~~~~~~~~~H~~~~E~~~~~~L~~~Gvi~l~~g 265 (266)
T PF00777_consen 192 RPSTGLMAVSLALHFCDEVHLYGFWPPDNRTVPYHYYDNVKPKPCFFYKNHDMPAEFRLLKRLHKQGVIKLHTG 265 (266)
T ss_dssp S--HHHHHHHHHHHH-SEEEEES-S---TTS---BTTB------------S-HHHHHHHHHHHHHTTSSEEE--
T ss_pred CCCccHHHHHHHhcCCCeEEEEEEEecCCCCCccccccCccccccCCCCCCCCHHHHHHHHHHHHCCCeEEecC
Confidence 7999999999999999999999999954567889999983 246999999999999999999999975
No 2
>KOG2692 consensus Sialyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-42 Score=355.85 Aligned_cols=185 Identities=30% Similarity=0.455 Sum_probs=134.3
Q ss_pred hhhcCCCCCCCC---CCCcceEEEEcCCCCCCCCcCCcccccccceeecCCCcccccccCCCCccceeEeecchhhhhHH
Q 011883 168 LNLILPAKPPFR---PRQFKKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARNMV 244 (475)
Q Consensus 168 L~~llP~~~P~~---~~~c~rCAVVGNSGiL~gS~~G~eIDshD~ViR~N~APv~~GyE~DVGsKTt~r~~~~~s~~~~~ 244 (475)
++.++|+.+|+. ...|++||||||||+|+||+||+|||+||+|||||+||| +|||+|||+|||+|++||+++....
T Consensus 136 ~~~~~p~~~p~~~~~~~~c~~CAVVGNsG~L~~S~~G~eID~~D~ViR~N~APt-~gye~DVGsKTt~r~~n~~Sv~~~~ 214 (376)
T KOG2692|consen 136 LFLLLPGVSPLFPLLFKRCRRCAVVGNSGILLNSRLGREIDSHDFVIRLNLAPT-KGYEKDVGSKTTLRTVNPPSVPTLL 214 (376)
T ss_pred hhhhccccCCCcccccccCceEEEECCcceeCCCccccccccccEEEECCCCCc-cchhcccccceeEEEEcchhhhhcc
Confidence 566778776642 234999999999999999999999999999999999997 8999999999999999987775322
Q ss_pred H-hhc--CCCCeEEEEec-cchhhHH------H-------------------HHhhcCCchhhh---hhhhhccC----C
Q 011883 245 A-ILK--GSTDEVLIIKS-VTHKDFN------A-------------------MIKSIPNPVYLF---QGIVLRRG----A 288 (475)
Q Consensus 245 ~-~l~--~~~d~~~iik~-~~~~d~~------~-------------------~ik~i~nP~~l~---~~~~~~~~----~ 288 (475)
. ... ... ..+++.. ....++. . ....++||.|+. ..++...+ +
T Consensus 215 ~~~~~~~~~~-~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~s~~~~~~~ 293 (376)
T KOG2692|consen 215 RNYLLDEPKR-VTFVVWLPFKNMSLLWLPAFYNTVNLRTGYWPVPRLYPVKPDKILLLDPLFILYTVDRYLKSHGVQPKR 293 (376)
T ss_pred cccccccccc-ceEEEEcCccchhhhhhhhhccccccccceeecceeccCCcCeEeecChHHHHHHHHHHhhCCCCCCCC
Confidence 1 111 111 2222211 1100000 0 001356676653 23333333 7
Q ss_pred CCcHHHHHHHHHhcCCeEEEeeeeeCCCCCc----cccccCCC------CCCCCchhHHHHHHHHHhcCcEEEEcc
Q 011883 289 KGTGMKSIELALSMCDIVDIYGFTVDPGYTE----WTRYFSTP------RKGHNPLQGRAYYQLLECLGVIRIHSP 354 (475)
Q Consensus 289 PSTG~l~l~lALhlCDeV~lYGF~~d~~y~~----~~HYyd~~------~~~Hd~~~E~~l~~~Lh~~GvI~Lh~p 354 (475)
||||++++++|||+|||||+||||+++.... .+||||+. ...|++..|...++.||++|+|.+..+
T Consensus 294 pSTG~l~~~lAl~lCdeV~lyGF~~~~~~~~~~~~~~hYyd~~~~~~~~~~~H~~~~e~~~~~~l~~~g~~~~~~~ 369 (376)
T KOG2692|consen 294 PSTGLLAVTLALHLCDEVHLYGFGPDNRCRNSHYVPYHYYDNAKPDELFYGLHDMPLEGEALRKLHEKGVIILLLR 369 (376)
T ss_pred CChhHHHHHHHHhhcCeEEEEEecCCCCCccCCCCccccccccccchhhhhhhhchhHHHHHHHHHhccccccccc
Confidence 9999999999999999999999999863222 46999975 257999999999999999998876543
No 3
>PF06002 CST-I: Alpha-2,3-sialyltransferase (CST-I); InterPro: IPR009251 This entry represents several alpha-2,3-sialyltransferase (2.4.99 from EC) proteins, most of which are found in the food-borne pathogen Campylobacter jejuni. Sialyltransferases transfer a sialic acid moiety from cytidine-5'-monophospho-N-acetyl-neuraminic acid (CMP-NeuAc) to terminal positions of various key glycoconjugates, which play critical roles in cell recognition and adherence []. The structure of Cst-II alpha-2,3-sialyltransferase from C. jejuni consists of a 3-layer alpha/beta/alpha topology. Cst-II catalytic mechanism involves an essential histidine (general base) and two tyrosine residues (coordination of the phosphate leaving group) to carry out substrate binding and glycosyl transfer. ; PDB: 2X63_A 2X61_B 1RO7_B 2WQQ_A 2X62_B 1RO8_A 2DRJ_A 2P56_A 2P2V_A.
Probab=95.71 E-value=0.063 Score=54.93 Aligned_cols=162 Identities=15% Similarity=0.203 Sum_probs=84.4
Q ss_pred ceEEEEcCCCCCCCCcCCcccccccceeecCCCcccccccCCCCccceeEeecchhhhhHH---HhhcCCCC---eEEEE
Q 011883 184 KKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARNMV---AILKGSTD---EVLII 257 (475)
Q Consensus 184 ~rCAVVGNSGiL~gS~~G~eIDshD~ViR~N~APv~~GyE~DVGsKTt~r~~~~~s~~~~~---~~l~~~~d---~~~ii 257 (475)
+.|.|.|||..|..-..|. +-.-+.|||||.-=....| -.|.+..-+++++....... ..|....+ +.++.
T Consensus 2 k~~~i~gngps~~~~~~~~-~~~~~~~fr~n~fy~e~~~--~lg~~~~~VFFn~~vf~~Qy~T~~~Li~n~EY~~e~i~c 78 (291)
T PF06002_consen 2 KPAIIAGNGPSLKEIDYSL-LPKDFDVFRCNQFYFEDKY--YLGKKVKAVFFNPCVFFEQYYTAKQLIQNGEYEIENIYC 78 (291)
T ss_dssp SEEEEE-SSGGGGC--GGG-S-SSEEEEEETTGGG-SBE--TT-SEECEEEE-GGGHHHHHHHHHHHHHTTS-EECEEEE
T ss_pred CceEEeCCCCchhhcchhh-CCCcccEEEecceecchhh--hcccceeEEEechHHHHHHHHHHHHHHhcCceeeeeeEE
Confidence 5799999999999888777 4444559999997432222 48999999999988763211 11211111 22333
Q ss_pred eccchhhH-----HHHHh-hcCC-----------chhhh----hhhhhccCCCCcHHHHHHHHHhc-CCeEEEeeeeeCC
Q 011883 258 KSVTHKDF-----NAMIK-SIPN-----------PVYLF----QGIVLRRGAKGTGMKSIELALSM-CDIVDIYGFTVDP 315 (475)
Q Consensus 258 k~~~~~d~-----~~~ik-~i~n-----------P~~l~----~~~~~~~~~PSTG~l~l~lALhl-CDeV~lYGF~~d~ 315 (475)
+.+-..++ ....+ .++. +.|.. +.. ....+.|||.+|+..|+-+ --|+-|.|.. +
T Consensus 79 s~~~~~~~e~~~f~~~~~~~yp~~~~~y~~l~~l~~f~~~~ky~~~-y~~q~~TSGVyM~~vAIAlGYKEIYLaGID-F- 155 (291)
T PF06002_consen 79 STINFEDFENKYFDDYFDKHYPDARLTYSYLKKLKPFYAHIKYNEI-YYNQRITSGVYMCAVAIALGYKEIYLAGID-F- 155 (291)
T ss_dssp ---S-TTTS-HHHHHHHHHHSTT-EETHHHHTTSHHHHHHHHHHHH-HH-----HHHHHHHHHHHCT--EEEEES---T-
T ss_pred eccccccccchhhhhHHHHhCCCchhHHHHHHhcHHHHHHHHHHHh-hcCCCcchHHHHHHHHHHcCcceEEEeeee-e-
Confidence 33322222 11111 1111 11100 010 1133679999999999998 5689999984 2
Q ss_pred CC-Cccccc-cCCC-----------------CCCCCchhHHHHHHHHHhcCcEEEE
Q 011883 316 GY-TEWTRY-FSTP-----------------RKGHNPLQGRAYYQLLECLGVIRIH 352 (475)
Q Consensus 316 ~y-~~~~HY-yd~~-----------------~~~Hd~~~E~~l~~~Lh~~GvI~Lh 352 (475)
| ..+.|| |+.. ...|+.....+.++-|.+.+-++++
T Consensus 156 -Y~~~~~hy~fe~k~~ni~~l~~~~~~~~~~~~~Hsk~~Dlqal~~lqk~y~v~iY 210 (291)
T PF06002_consen 156 -YQNGGGHYAFENKSENIINLLPDFENRKSSDIQHSKDYDLQALEFLQKYYDVKIY 210 (291)
T ss_dssp -T-TTSSSSSS-SSTHHHHHHSGGGGSS--STTT--HHHHHHHHHHHHHHHT-EEE
T ss_pred -ecCCCCcccccccccchhhhCcccccccccccccchhhCHHHHHHHHHhcCeeEE
Confidence 3 456677 5543 1578888888888888888888887
No 4
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=74.87 E-value=8.2 Score=35.63 Aligned_cols=122 Identities=19% Similarity=0.202 Sum_probs=70.9
Q ss_pred ceEEEEcCCCCCCCC-cCCcccccccceeecCCCcccccccCCCCccceeEeecchhhhhHHHh--hcCCCCeEEEEecc
Q 011883 184 KKCAVVGNSGDLLKT-EFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARNMVAI--LKGSTDEVLIIKSV 260 (475)
Q Consensus 184 ~rCAVVGNSGiL~gS-~~G~eIDshD~ViR~N~APv~~GyE~DVGsKTt~r~~~~~s~~~~~~~--l~~~~d~~~iik~~ 260 (475)
++|.|||||-.|... ..=++.-..-++|=+|.+.- -..+-|-+-++++...........+ ..+..+..++....
T Consensus 25 ~~~~IvgaGPSL~~~i~~lk~~~~~~~iia~~sa~~---~L~~~gI~Pd~~v~~D~~~~~~~~~~~~~~~~~i~l~~~~~ 101 (170)
T PF01973_consen 25 KPAIIVGAGPSLDKNIELLKENRNKAIIIAVNSALK---ALLKNGIKPDFVVSIDPQFWNYEHFKEINKEFDIPLFFASS 101 (170)
T ss_pred CeEEEEecCCCHHHHHHHHHhcccCcEEEEecHHHH---HHHHcCceEEEEEEcCCCcchHHHHhhcccccceEEEEecc
Confidence 699999999998764 22233335677888888842 2456788889988765433222111 11111444554444
Q ss_pred chhhHHHHHhhcCCchhh-h------hhhh------hccCCCCcHHHHHHHHHhc-CCeEEEeee
Q 011883 261 THKDFNAMIKSIPNPVYL-F------QGIV------LRRGAKGTGMKSIELALSM-CDIVDIYGF 311 (475)
Q Consensus 261 ~~~d~~~~ik~i~nP~~l-~------~~~~------~~~~~PSTG~l~l~lALhl-CDeV~lYGF 311 (475)
.++..... +..+.+. . ..+. .-...+|.+..++.+|++| |++|-+.|.
T Consensus 102 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sV~~~a~~lA~~lG~~~I~L~G~ 163 (170)
T PF01973_consen 102 ANPNILRK---FKGPKIFFFSNSYQYFAWFSKDFGYILYSGGSVANTALQLAYYLGFKPIYLIGQ 163 (170)
T ss_pred cCHHHHHH---cCCceEEEecCCccchhhhhccccccCCCCccHHHHHHHHHHHHCCCcEEEEee
Confidence 44433322 2222211 0 1111 1122468899999999988 999999998
No 5
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=32.63 E-value=44 Score=23.19 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=10.7
Q ss_pred CCCCCCccCCCCCCchHHHHHHHHHHHHHHH
Q 011883 1 MRTHKSSLHGHNSRRPTLLHLVCVAAIFGFL 31 (475)
Q Consensus 1 ~~~~~~~~~~~~~rr~~~~~L~~~aa~~sll 31 (475)
|+.+...++.+.++.+||.=++++-+.++++
T Consensus 1 M~~~~~~~~~~~~~GFTLiEllVa~~I~~il 31 (31)
T PF13544_consen 1 MRPRRRRRRRRRQRGFTLIELLVAMAILAIL 31 (31)
T ss_dssp -----------------HHHHHHHHHHHHHH
T ss_pred CCCccccccccccCCccHHHHHHHHHHHHHC
Confidence 3334444455678899999888887777653
No 6
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=25.43 E-value=36 Score=26.42 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHH------HhhhcCC
Q 011883 19 LHLVCVAAIFGFLVFALQ------SIFLTGN 43 (475)
Q Consensus 19 ~~L~~~aa~~sll~~~iq------ss~f~~~ 43 (475)
++.+.+.++|-+++ |+| ||||+..
T Consensus 12 aLFi~iPT~FLlil-YVkT~s~~kssf~sd~ 41 (50)
T PRK14094 12 LLFVGVPTIFLIGL-FISTQDGEKSSFYSDS 41 (50)
T ss_pred HHHHHHHHHHhhhe-eEEecccCccceeccc
Confidence 44455555554444 776 7787773
No 7
>PHA03164 hypothetical protein; Provisional
Probab=23.40 E-value=62 Score=27.56 Aligned_cols=30 Identities=20% Similarity=0.425 Sum_probs=22.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011883 13 SRRPTLLHLVCVAAIFGFLVFALQSIFLTG 42 (475)
Q Consensus 13 ~rr~~~~~L~~~aa~~sll~~~iqss~f~~ 42 (475)
+||.+...|++..++++.++|.|.-.+..+
T Consensus 53 nrRktftFlvLtgLaIamILfiifvlyvFn 82 (88)
T PHA03164 53 NRRKTFTFLVLTGLAIAMILFIIFVLYVFN 82 (88)
T ss_pred hhhheeehHHHHHHHHHHHHHHHHHHHhee
Confidence 778888788888888888888776665555
No 8
>PF11125 DUF2830: Protein of unknown function (DUF2830); InterPro: IPR022599 This entry represents putative lysis proteins from Bacteriophage MS2 and Bacteriophage BZ13. The bacteriophage MS2 lysin protein COM1L5 from SWISSPROT was identified as an overlapping cistron in the bacteriophage MS2 RNA [].
Probab=23.21 E-value=1.4e+02 Score=23.41 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=19.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHH
Q 011883 11 HNSRRPTLLHLVCVAAIFGFLVFA 34 (475)
Q Consensus 11 ~~~rr~~~~~L~~~aa~~sll~~~ 34 (475)
..+|.-+++.++|+|.|.|=|...
T Consensus 10 ~~QRS~~LYV~I~LAI~LS~FTn~ 33 (54)
T PF11125_consen 10 DQQRSSTLYVLIALAIFLSKFTNQ 33 (54)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHH
Confidence 558889999999999988877644
No 9
>COG5213 FIP1 Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=19.58 E-value=1.2e+02 Score=30.72 Aligned_cols=41 Identities=22% Similarity=0.158 Sum_probs=29.5
Q ss_pred CCCCCCCCcCCcccccccceeecCCCcccccccCCCCccce
Q 011883 191 NSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRD 231 (475)
Q Consensus 191 NSGiL~gS~~G~eIDshD~ViR~N~APv~~GyE~DVGsKTt 231 (475)
|||+-.++..|+-||..|++=-+|..|...+--.+.|-+-+
T Consensus 182 ~sgn~~~~~e~~~~~~~~~p~~~~~s~~~g~~g~~mg~~~n 222 (266)
T COG5213 182 NSGNDRDFNEGKIDDDGDGPNGANGSNDNGNMGNGMGGRPN 222 (266)
T ss_pred ccCCCCChhhheecccCCCCCCCCCCCCCCCcccCcCCCCC
Confidence 78888899999999999998777777643444444444433
No 10
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=19.42 E-value=97 Score=26.96 Aligned_cols=16 Identities=25% Similarity=0.656 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 011883 19 LHLVCVAAIFGFLVFA 34 (475)
Q Consensus 19 ~~L~~~aa~~sll~~~ 34 (475)
.++||++.||.+++|+
T Consensus 5 ~l~Lc~~SF~~G~lft 20 (95)
T PF13334_consen 5 VLLLCIASFCAGMLFT 20 (95)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6788999999888765
Done!