Query 011883
Match_columns 475
No_of_seqs 258 out of 695
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 17:16:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wnf_A CMP-N-acetylneuraminate 100.0 2.7E-55 9.2E-60 439.4 14.1 240 77-354 14-297 (298)
2 1ro7_A Alpha-2,3/8-sialyltrans 99.8 4.4E-20 1.5E-24 181.5 14.0 167 184-353 2-210 (259)
3 2wqq_A Alpha-2,3-/2,8-sialyltr 99.8 8.5E-20 2.9E-24 182.3 11.5 166 184-352 2-209 (291)
4 2p2v_A Alpha-2,3-sialyltransfe 99.8 1.8E-19 6.1E-24 179.8 13.5 168 181-352 17-226 (288)
5 2v40_A Adenylosuccinate synthe 16.0 48 0.0017 35.0 1.4 67 168-240 19-90 (459)
6 3arc_M Photosystem II reaction 11.2 2.5E+02 0.0084 19.7 3.4 20 18-38 11-30 (36)
7 2d7u_A Adenylosuccinate synthe 11.1 72 0.0024 32.5 1.0 34 205-239 27-61 (339)
8 2klu_A T-cell surface glycopro 10.8 1.7E+02 0.0058 23.2 2.8 50 22-71 12-62 (70)
9 3arc_I Photosystem II reaction 10.8 1.4E+02 0.0047 21.2 2.0 16 23-38 11-26 (38)
10 2xvc_A ESCRT-III, SSO0910; cel 10.1 1.7E+02 0.0058 22.6 2.5 16 337-352 43-58 (59)
No 1
>2wnf_A CMP-N-acetylneuraminate-beta-galactosamide-alpha- 2,3-sialyltransferase; glycosyltransferase, disulfide bond, golgi apparatus, glycoprotein; HET: CG3 A2G GAL; 1.25A {Sus scrofa} PDB: 2wnb_A* 2wml_A
Probab=100.00 E-value=2.7e-55 Score=439.36 Aligned_cols=240 Identities=27% Similarity=0.460 Sum_probs=180.5
Q ss_pred ccccccccceeccCCCCCchhhhhhcccccccccchhhHHHHHHhhhcccCeeccccccccCCCc---chhhhHHHHhhh
Q 011883 77 KIIDHCKLVLKFPEGTNSTWYNEQFKIYEPLEYAYDVCEAILLWEQYRNMTTVLTREYLDARPDG---WLEYAAKRIAQL 153 (475)
Q Consensus 77 ~~~~~C~~~l~~~~~~~s~Wf~~~F~~~~~~~~~f~~~~~vl~w~~~~~~~~~ltre~~~~~p~G---W~~~~~~~i~~~ 153 (475)
..+..||.+++.+ +.|+||+++|+ ++++++||+++...+++. |+++++.
T Consensus 14 ~~~~~c~~~~~~~--~~s~~f~~~f~---------------------~~~~~~lt~~~~~~~~~~~~~w~~l~~~----- 65 (298)
T 2wnf_A 14 YRPCTCTRCIEEQ--RVSAWFDERFN---------------------RSMQPLLTAKNAHLEEDTYKWWLRLQRE----- 65 (298)
T ss_dssp --CCSSSSCTTCS--SSCHHHHHHCC---------------------TTCCCBCCTTTCCCCHHHHHHHHHHHCC-----
T ss_pred CCCCCCCcccccc--ccCHHHHhHhC---------------------CCCCceeccCcCCCCHHHHHHHHhcccc-----
Confidence 3456899998764 48999999999 467789999888777764 6554331
Q ss_pred ccCcccchhhhHHHhhhcCCCCCC-CCC---CCcceEEEEcCCCCCCCCcCCcccccccceeecCCCcccccccCCCCcc
Q 011883 154 GADKCYNRTLCEEHLNLILPAKPP-FRP---RQFKKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLK 229 (475)
Q Consensus 154 ~~~~~~n~~~~~~~L~~llP~~~P-~~~---~~c~rCAVVGNSGiL~gS~~G~eIDshD~ViR~N~APv~~GyE~DVGsK 229 (475)
. ...+...+.+.|+.++|+..| +.. .+|+|||||||||||+||+||+|||+||||||||.||+ +|||+|||+|
T Consensus 66 ~--~~~~~~~v~~~l~~~lP~~~~~~~~~~~~~~~~CAVVGNsGiL~~S~~G~eIDs~D~ViR~N~aP~-~gye~DVG~K 142 (298)
T 2wnf_A 66 K--QPNNLNDTIRELFQVVPGNVDPLLEKRLVSCRRCAVVGNSGNLKESYYGPQIDSHDFVLRMNKAPT-EGFEADVGSK 142 (298)
T ss_dssp S--SCCCHHHHHHHHTTTSCSCCCTTTTGGGCSCCEEEEECCBGGGTTCCCHHHHHTSSEEEEETTCCC-TTCHHHHCSC
T ss_pred c--ccccHHHHHHHHHHhCCCccccccccccCCCCeEEEECCccccCCCCccccccchhheeccCcCCc-CcccccCccC
Confidence 1 112334456778999999876 765 79999999999999999999999999999999999997 8999999999
Q ss_pred ceeEeecchhhhhHHHhhcCCCCeEEEEeccchhhHH-------------------------HHHhhcCCchhhh---hh
Q 011883 230 RDFRLVVRGAARNMVAILKGSTDEVLIIKSVTHKDFN-------------------------AMIKSIPNPVYLF---QG 281 (475)
Q Consensus 230 Tt~r~~~~~s~~~~~~~l~~~~d~~~iik~~~~~d~~-------------------------~~ik~i~nP~~l~---~~ 281 (475)
||++++|++++..+. .+..+++..+...++. .....++||.++. +.
T Consensus 143 Tt~~~~n~~s~~~~~------~~~~~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~P~~~~~~~~~ 216 (298)
T 2wnf_A 143 TTHHFVYPESFRELA------QEVSMILVPFKTTDLEWVISATTTGRISHTYVPVPAKIKVKKEKILIYHPAFIKYVFDR 216 (298)
T ss_dssp CSEEEEBTTBCCCCC------TTCEEEECCSSHHHHHHHHHHTTTCCCCBSSSBCCSCCCCCGGGEEEBCHHHHHHHHHH
T ss_pred ceeEEeccccccccC------CCceEEEeecCccchhhhhHhhcCCcccchhhhhhHHhhccCCeEEEeCHHHHHHHHHH
Confidence 999999998764321 1111211111100100 0001467887653 33
Q ss_pred hhhccC-CCCcHHHHHHHHHhcCCeEEEeeeeeCCCCCccccccCCCC--------CCCCchhHHHHHHHHHhcCcEEEE
Q 011883 282 IVLRRG-AKGTGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPR--------KGHNPLQGRAYYQLLECLGVIRIH 352 (475)
Q Consensus 282 ~~~~~~-~PSTG~l~l~lALhlCDeV~lYGF~~d~~y~~~~HYyd~~~--------~~Hd~~~E~~l~~~Lh~~GvI~Lh 352 (475)
|....+ +||||++++++||++||||+||||++|. ++.|+||||+.. ..|++..|+++|++||++|+|+||
T Consensus 217 w~~~~~~~pSTG~~~v~lAl~~CDeV~lYGF~~d~-~~~~~HYyd~~~~~~~~~~~~~H~~~~E~~~~~~Lh~~G~i~l~ 295 (298)
T 2wnf_A 217 WLQGHGRYPSTGILSVIFSLHICDEVDLYGFGADS-KGNWHHYWENNPSAGAFRKTGVHDGDFESNVTTILASINKIRIF 295 (298)
T ss_dssp TSTTCSSSCCHHHHHHHHHHHHCSEEEEESCSCCT-TSCCCBTTC-----------CCSCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHhCCCCCchhHHHHHHHHHhCCEEEEeeeccCC-CCCceecccCccccccccCCCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 433333 6999999999999999999999999885 667999999852 579999999999999999999999
Q ss_pred cc
Q 011883 353 SP 354 (475)
Q Consensus 353 ~p 354 (475)
++
T Consensus 296 ~g 297 (298)
T 2wnf_A 296 KG 297 (298)
T ss_dssp CC
T ss_pred eC
Confidence 76
No 2
>1ro7_A Alpha-2,3/8-sialyltransferase; mixed alpha/beta, rossmann fold; HET: CSF; 1.80A {Campylobacter jejuni} SCOP: c.130.1.1 PDB: 1ro8_A* 2drj_A* 2x62_A* 2x61_A* 2x63_A*
Probab=99.82 E-value=4.4e-20 Score=181.47 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=112.9
Q ss_pred ceEEEEcCCCCCCCCcCCcccccccceeecCCCcccccccCCCCccceeEeecchhhhhHHH----hhcCCC-CeEEEEe
Q 011883 184 KKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARNMVA----ILKGST-DEVLIIK 258 (475)
Q Consensus 184 ~rCAVVGNSGiL~gS~~G~eIDshD~ViR~N~APv~~GyE~DVGsKTt~r~~~~~s~~~~~~----~l~~~~-d~~~iik 258 (475)
++|+||||||+|++..++. ||..++|||||.++....| |||+||++.+++|+....... ...... +...++.
T Consensus 2 k~c~ivGNGpsL~~id~~~-l~~~~~v~r~N~~~~~d~y--~VG~kt~~v~~NPsv~~~~~~~l~~~~~~~~~~~~~i~~ 78 (259)
T 1ro7_A 2 KKVIIAGNGPSLKEIDYSR-LPNDFDVFRCNQFYFEDKY--YLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIMC 78 (259)
T ss_dssp CEEEEECCSGGGGCCCTTS-CCSSEEEEEETTGGGCSEE--TTCSEEEEEEECGGGHHHHHHHHHHHHHTTSCEEEEEEE
T ss_pred ceEEEEeCcHHHhhhhhhh-hccCCeEEEEeChhhcCcc--ccccccceEEECcHHHHHHHHHHHHHHhhcccccceEee
Confidence 5899999999999888885 7777779999999863346 699999999999987642211 111211 1112222
Q ss_pred ccchh------hHHHHHh-----hcCCchhhh--hh-hh-------hccCCCCcHHHHHHHHHhc-CCeEEEeee-----
Q 011883 259 SVTHK------DFNAMIK-----SIPNPVYLF--QG-IV-------LRRGAKGTGMKSIELALSM-CDIVDIYGF----- 311 (475)
Q Consensus 259 ~~~~~------d~~~~ik-----~i~nP~~l~--~~-~~-------~~~~~PSTG~l~l~lALhl-CDeV~lYGF----- 311 (475)
....+ .+...++ ...++.++. +. |. ....+||||++|+.+|+.+ |+||+||||
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~r~stGl~~~~lA~~lGckeIyLyG~D~~~~ 158 (259)
T 1ro7_A 79 SNYNQAHLENENFVKTFYDYFPDAHLGYDFFKQLKDFNAYFKFHEIYFNQRITSGVYMCAVAIALGYKEIYLSGIDFYQN 158 (259)
T ss_dssp CCCSCTTTSCHHHHHTHHHHSTTCEETHHHHTTSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTCCEEEEESCCTTTT
T ss_pred ecccccccchHHHHHHHHHhcCccccCchhhhHHHHHHHhhhhcccccccCcCHHHHHHHHHHHCCCCEEEEEeEcCCCC
Confidence 22111 1111111 122333321 11 11 1124789999999999999 999999999
Q ss_pred ---eeCCCCC-----ccccccCCCC--CCCCchhHHHHHHHHHhcCcEEEEc
Q 011883 312 ---TVDPGYT-----EWTRYFSTPR--KGHNPLQGRAYYQLLECLGVIRIHS 353 (475)
Q Consensus 312 ---~~d~~y~-----~~~HYyd~~~--~~Hd~~~E~~l~~~Lh~~GvI~Lh~ 353 (475)
++..... ..+|||++.. ..|+|..|++.++.||++|-++++-
T Consensus 159 ~~~~~Y~~~~~~~~~i~~hy~d~~~~~~~H~m~~Ef~al~~Lh~~g~v~I~n 210 (259)
T 1ro7_A 159 GSSYAFDTKQKNLLKLAPNFKNDNSHYIGHSKNTDIKALEFLEKTYKIKLYC 210 (259)
T ss_dssp SSCCSSCCCCHHHHHHCGGGGSSCCCCTTCCHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCcCCCCCcccccccCcccccccCCccccCchHHHHHHHHHHHhCCeEEEE
Confidence 6654322 3479998764 5799999999999999999888884
No 3
>2wqq_A Alpha-2,3-/2,8-sialyltransferase; GTA, cstii, glycosyltransfer; HET: CSF; 2.25A {Campylobacter jejuni}
Probab=99.80 E-value=8.5e-20 Score=182.27 Aligned_cols=166 Identities=13% Similarity=0.112 Sum_probs=110.5
Q ss_pred ceEEEEcCCCCCCCCcCCcccccccceeecCCCcccccccCCCCccceeEeecchhhhhHH-Hh---hcCC--CCeEEEE
Q 011883 184 KKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARNMV-AI---LKGS--TDEVLII 257 (475)
Q Consensus 184 ~rCAVVGNSGiL~gS~~G~eIDshD~ViR~N~APv~~GyE~DVGsKTt~r~~~~~s~~~~~-~~---l~~~--~d~~~ii 257 (475)
++|+||||||+|.++. |.+||++|+|||||.+|....| +||++|.+.++++....... .. .... ....++.
T Consensus 2 ~~c~IvGNGpSL~~~~-~~~i~~~~~vi~vN~~~~~~~~--~~g~~~~yv~~dp~~~~~~~~~l~~~~~~~~~~~~~i~~ 78 (291)
T 2wqq_A 2 KKVIIAGNGPSLKEID-YSRLPNDFDVFRCNQFYFEDKY--YLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIMC 78 (291)
T ss_dssp CEEEEECCSGGGGCCC-GGGCCSSEEEEEETTGGGCSEE--TTCSEEEEEEECGGGHHHHHHHHHHHHHTTSCEEEEEEE
T ss_pred CcEEEEeCchhhccCc-hhhhccCCeEEEEcCccccccc--ccccCccEEEEchHHHHHHHHHHHHHHhccccccceeee
Confidence 5899999999999997 9999999999999999975556 59999999999987664221 11 1211 1122233
Q ss_pred eccch--h---hHHHHHh-----hcCCchhhh--hh-hh-------hccCCCCcHHHHHHHHHhc-CCeEEEeee-----
Q 011883 258 KSVTH--K---DFNAMIK-----SIPNPVYLF--QG-IV-------LRRGAKGTGMKSIELALSM-CDIVDIYGF----- 311 (475)
Q Consensus 258 k~~~~--~---d~~~~ik-----~i~nP~~l~--~~-~~-------~~~~~PSTG~l~l~lALhl-CDeV~lYGF----- 311 (475)
..... . .+...++ ....+.++. +. |. ....+||||++|+.+|+.+ |+||+||||
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~l~~l~~~~~~~~~~~~~~~~r~stGl~~lslA~~lGckeIyLyGfD~~~~ 158 (291)
T 2wqq_A 79 SNYNQAHLENENFVKTFYDYFPDAHLGYDFFKQLKDFNAYFKFHEIQFNQRITSGVYMCAVAIALGYKEIYLSGIDFYQN 158 (291)
T ss_dssp CCCSCTTTSCHHHHHTHHHHSTTCEETHHHHTTCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTCCEEEEESCCCC--
T ss_pred eeccchhhHHHHHHHHHHhhcCceeccHhhhhhHHHHhhhhhccccccccCccHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 22211 1 1111111 111222221 11 11 0233799999999999999 999999999
Q ss_pred ---eeCCCC-----CccccccCCCC--CCCCchhHHHHHHHHHhcCcEEEE
Q 011883 312 ---TVDPGY-----TEWTRYFSTPR--KGHNPLQGRAYYQLLECLGVIRIH 352 (475)
Q Consensus 312 ---~~d~~y-----~~~~HYyd~~~--~~Hd~~~E~~l~~~Lh~~GvI~Lh 352 (475)
++.... ...+|||++.. ..|.|+.|++.++.||++|-|+++
T Consensus 159 ~~~~~y~~~~~~~~~i~~hy~d~~~~~~~H~mp~ef~al~~Lh~~g~v~vy 209 (291)
T 2wqq_A 159 GSSYAFDTKQKNLLKLAPNFKNDNSHYIGHSKNTDIKALEFLEKTYKIKLY 209 (291)
T ss_dssp ---CCSCCCCHHHHHHCGGGC-------CCCHHHHHHHHHHHHHHHTCEEE
T ss_pred CCCCcCcCCccccccCCCccccccCCCCCcCCHHHHHHHHHHHHhcCeeEE
Confidence 543221 12378998753 579999999999999999988887
No 4
>2p2v_A Alpha-2,3-sialyltransferase; mixed alpha-beta; HET: CSF; 1.85A {Campylobacter jejuni} PDB: 2p56_A
Probab=99.80 E-value=1.8e-19 Score=179.85 Aligned_cols=168 Identities=13% Similarity=0.147 Sum_probs=113.2
Q ss_pred CCcceEEEEcCCCCCCCCcCCcccccccceeecCCCcccccccCCCCccceeEeecchhhhhHHHhhc----CC--CCeE
Q 011883 181 RQFKKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARNMVAILK----GS--TDEV 254 (475)
Q Consensus 181 ~~c~rCAVVGNSGiL~gS~~G~eIDshD~ViR~N~APv~~GyE~DVGsKTt~r~~~~~s~~~~~~~l~----~~--~d~~ 254 (475)
...++|+||||||+|+++. |.+||+.|+|||||.+|+...| +||++|.+.+++|.........+. .. ....
T Consensus 17 ~~~~~c~IvGNGPSL~~~~-~~~i~~~~~v~rvN~~~~~~~~--~~g~~~~yv~~dp~~~~~~~~~l~~l~~~~~y~~~~ 93 (288)
T 2p2v_A 17 KNMQNIIIAGNGPSLKNIN-YKRLPREYDVFRCNQFYFEDKY--YLGKKIKAVFFNPGVFLQQYHTAKQLILKNEYEIKN 93 (288)
T ss_dssp TTCCEEEEECCSGGGGGCC-GGGSCSSCEEEEETTGGGCSBC--TTCSEESEEEECGGGHHHHHHHHHHHHHTTSCEECC
T ss_pred CCCCeEEEEecChhhcCCC-chhhccCCEEEEEcChHhcCcc--cccccceEEEECcHHHHHHHHHHHhhhhcccccccE
Confidence 3578999999999999998 9999999999999999985567 599999999999987653222111 11 1111
Q ss_pred EEEeccch---h--hHHHHHhh-cCCc----hhhh--hhhhh--------ccCCCCcHHHHHHHHHhc-CCeEEEeeeee
Q 011883 255 LIIKSVTH---K--DFNAMIKS-IPNP----VYLF--QGIVL--------RRGAKGTGMKSIELALSM-CDIVDIYGFTV 313 (475)
Q Consensus 255 ~iik~~~~---~--d~~~~ik~-i~nP----~~l~--~~~~~--------~~~~PSTG~l~l~lALhl-CDeV~lYGF~~ 313 (475)
+..+.... + .....++. ..+. .++. ..++. ...+||||++|+.+|+.+ ||||+||||..
T Consensus 94 i~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~l~~fw~~~~~~~~~~~~r~StGl~~l~iA~~lGckeIyLyGfD~ 173 (288)
T 2p2v_A 94 IFCSTFNLPFIESNDFLHQFYNFFPDAKLGYEVIENLKEFYAYIKYNEIYFNKRITSGVYMCAIAIALGYKTIYLCGIDF 173 (288)
T ss_dssp EEECCCCCTTTSCHHHHHHHHHHCTTCEETHHHHTTSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTCCEEEEESCCT
T ss_pred EEeeecccccchHHHHHHHHHHhCCCceEeehhhhHHHHHhhhhhhcccccccCcchHHHHHHHHHHcCCCEEEEeeecC
Confidence 22222211 1 11111111 1111 1111 11111 134799999999999999 99999999942
Q ss_pred CCCCCccccccCC---------------CCCCCCchhHHHHHHHHHhcCcEEEE
Q 011883 314 DPGYTEWTRYFST---------------PRKGHNPLQGRAYYQLLECLGVIRIH 352 (475)
Q Consensus 314 d~~y~~~~HYyd~---------------~~~~Hd~~~E~~l~~~Lh~~GvI~Lh 352 (475)
. +....+||.+. ....|++..|+..++.||++|=|+++
T Consensus 174 ~-~~~~~yhYd~~~~~~~~~~~~~~~~k~~~~H~m~~e~~al~~Lh~~g~v~iy 226 (288)
T 2p2v_A 174 Y-EGDVIYPFEAMSTNIKTIFPGIKDFKPSNCHSKEYDIEALKLLKSIYKVNIY 226 (288)
T ss_dssp T-CSSCCCSSCSSCHHHHHHSCC--CCCCCTTCCHHHHHHHHHHHHHHHTCEEE
T ss_pred C-CCCCcccccCccccccccccccccccCCcccCCHHHHHHHHHHHHhcCceEE
Confidence 1 22345676553 13689999999999999999888877
No 5
>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis, metal- binding, purine metabolism, nucleotide-binding, GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens} PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A* 1mf0_A* 1mf1_A* 2dgn_A*
Probab=16.00 E-value=48 Score=35.02 Aligned_cols=67 Identities=24% Similarity=0.244 Sum_probs=38.4
Q ss_pred hhhcCCCCCCCCCCCcceEEEEcCCCCCCCCcCCcccc----cccceeecCCCcccccccCCC-CccceeEeecchhh
Q 011883 168 LNLILPAKPPFRPRQFKKCAVVGNSGDLLKTEFGEEID----SHDAVIRDNEAPVNQRYAKHV-GLKRDFRLVVRGAA 240 (475)
Q Consensus 168 L~~llP~~~P~~~~~c~rCAVVGNSGiL~gS~~G~eID----shD~ViR~N~APv~~GyE~DV-GsKTt~r~~~~~s~ 240 (475)
.|+-.|+..|+... ..+|||--- =..+-|+-+| .+|+|.|+|+.+ +.|++--+ |.|..|+.+..+++
T Consensus 19 ~~~~~~~~~~~~~~---v~vVvG~QW--GDEGKGKivD~La~~~dvVvR~qGG~-NAGHTVv~~g~k~~lhliPSGil 90 (459)
T 2v40_A 19 YFQSMPRARPGGNR---VTVVLGAQW--GDEGKGKVVDLLAQDADIVCRCQGGN-NAGHTVVVDSVEYDFHLLPSGII 90 (459)
T ss_dssp ----------CCCC---EEEEEESSS--SCSSHHHHHHHHHTTCSEEEECSBCS-CCCEEEEETTEEEEESSSCGGGG
T ss_pred eecCCCccCCCCee---EEEEEecCc--CCCCCceEEEEeccCCCEEeecCccC-CCCcEEEECCEEEEEEccCcccc
Confidence 34445665565421 237887543 2345566665 799999999998 68987544 66888887755443
No 6
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=11.23 E-value=2.5e+02 Score=19.71 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 011883 18 LLHLVCVAAIFGFLVFALQSI 38 (475)
Q Consensus 18 ~~~L~~~aa~~sll~~~iqss 38 (475)
.++.+.+..+|-+++ |||+.
T Consensus 11 t~Lfi~iPt~FLlil-YvqT~ 30 (36)
T 3arc_M 11 TALFVLVPSVFLIIL-YVQTE 30 (36)
T ss_dssp HHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHH-hheec
Confidence 455666777776665 88853
No 7
>2d7u_A Adenylosuccinate synthetase; structural genomics, conserved hypothetical protein, NPPSFA; 2.50A {Pyrococcus horikoshii}
Probab=11.13 E-value=72 Score=32.47 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=25.6
Q ss_pred ccccceeecCCCcccccccCCC-CccceeEeecchh
Q 011883 205 DSHDAVIRDNEAPVNQRYAKHV-GLKRDFRLVVRGA 239 (475)
Q Consensus 205 DshD~ViR~N~APv~~GyE~DV-GsKTt~r~~~~~s 239 (475)
|.+|+|.|+|+.+ +.|++--+ |.|..|+.+..+.
T Consensus 27 ~~~d~VvR~qGG~-NAGHTVv~~g~~~~lhllPSGi 61 (339)
T 2d7u_A 27 DEPEIIARGGVGT-NAGHSVVINGKKYAVRQIPTGF 61 (339)
T ss_dssp TCCSEEEECSSSS-SCCEEEEETTEEEEESSSCTTT
T ss_pred CCCCEEEEcCccC-CCCcEEEECCEEEEEEcCCccc
Confidence 4599999999998 68977433 6688888775444
No 8
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=10.84 E-value=1.7e+02 Score=23.24 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcC-CCCCCccHHHHhhhhcccccccccccccc
Q 011883 22 VCVAAIFGFLVFALQSIFLTG-NRISDLYREEVRTLSGFQLNVQQCVANRG 71 (475)
Q Consensus 22 ~~~aa~~sll~~~iqss~f~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 71 (475)
+++.+.+++|+|+-...||.- ..-.|.-.|-+...+.+-+..+.|-+..-
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRrrqAeRMSQikrlLsEKKTCQC~hr 62 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQAERMSQIKRLLSEKKTSQSPHR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSSCTTSSHHHHHHHSSSCCCCCCC
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCcHH
Confidence 788999999999999999766 22222112223333334444555554443
No 9
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=10.81 E-value=1.4e+02 Score=21.19 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 011883 23 CVAAIFGFLVFALQSI 38 (475)
Q Consensus 23 ~~aa~~sll~~~iqss 38 (475)
++.-|.||++|...|+
T Consensus 11 vV~ffvsLFiFGfLsn 26 (38)
T 3arc_I 11 VVTFFVLLFVFGFLSG 26 (38)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccccCC
Confidence 4455778888884443
No 10
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=10.05 E-value=1.7e+02 Score=22.60 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCcEEEE
Q 011883 337 RAYYQLLECLGVIRIH 352 (475)
Q Consensus 337 ~~l~~~Lh~~GvI~Lh 352 (475)
..++++|.++|+|+|-
T Consensus 43 ~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 43 VKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHCCCeecc
Confidence 4567888889998874
Done!