BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011884
(475 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7FGZ2|RH1_ARATH DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana
GN=RH1 PE=2 SV=3
Length = 522
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/470 (69%), Positives = 376/470 (80%), Gaps = 39/470 (8%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGISSLFPVQVAVW ETIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRAL
Sbjct: 49 MGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRAL 108
Query: 61 VVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAP 120
VVLPTRDLAL QVKDVF AIAP
Sbjct: 109 VVLPTRDLAL---------------------------------------QVKDVFDAIAP 129
Query: 121 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 180
AVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+ Q L+SAVDILVATPGRLMDH
Sbjct: 130 AVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDH 189
Query: 181 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240
IN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT++ +++ F + F+PSAFGS
Sbjct: 190 INNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGS 249
Query: 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 300
L+T+RR VERGFK KPYPRLVKMVLSATLTQDP+KL QLDLHHPLF+TTG +RY+LPE+
Sbjct: 250 LQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPEK 309
Query: 301 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 360
LE +LICE+ +KP+YLVALL+S EKCI+FTSSVE+T RLC LLN FG+ +IK KEYS
Sbjct: 310 LECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYS 369
Query: 361 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 420
G QS+RSK LKAFR+G IQVLV+SDA+TRGMDV+GV NV+NYD P + KT+IHRAGRT
Sbjct: 370 GGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRT 429
Query: 421 ARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 470
ARAGQ GRCFTLL EV+RF KLL+K +DSCPI+ IP + ++S+R Y
Sbjct: 430 ARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIPPTSLDSIRATY 479
>sp|Q0DWT8|RH1_ORYSJ DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp.
japonica GN=Os02g0795900 PE=2 SV=1
Length = 521
Score = 572 bits (1474), Expect = e-162, Method: Compositional matrix adjust.
Identities = 289/474 (60%), Positives = 344/474 (72%), Gaps = 42/474 (8%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGI S FPVQVA W ETIGPG FERD+CINSPTGSGKTL+YALPIVQ L+ R VRCLRAL
Sbjct: 55 MGIESFFPVQVAAWLETIGPGAFERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRAL 114
Query: 61 VVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAP 120
VVLPTRDLAL QVK+VF AIAP
Sbjct: 115 VVLPTRDLAL---------------------------------------QVKEVFDAIAP 135
Query: 121 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 180
VGLSVG AVGQSSIADE+S LI++ K D E + E Q+ VDILVATPGRLMDH
Sbjct: 136 VVGLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQTKVDILVATPGRLMDH 195
Query: 181 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR-FSDASTFLPSAFG 239
I+ T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+QLTRS ++N +SD + +
Sbjct: 196 ISMTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLTRSSDQNHSWSDMNG--ETLLH 253
Query: 240 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPE 299
L TIRR GVERGFK K +PRL K+VLSATLTQDP+KL+QL+L HPL L +G+ RY++P
Sbjct: 254 PLTTIRRSGVERGFKGKSFPRLAKIVLSATLTQDPSKLSQLELQHPLLLNSGKKRYRIPT 313
Query: 300 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 359
+L+SYKL+C+S LKPL L+ LLQ L EKC+VFTSSVES+HRL TLL F +L K EY
Sbjct: 314 KLQSYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVESSHRLSTLLEFFEDLPFKFSEY 373
Query: 360 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 419
S LQR+S R KTL AF+EGKI VL+ +D M RG+ ++G+ V+NYD P Y+KTYIHRAGR
Sbjct: 374 SRLQRESTRRKTLDAFKEGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGR 433
Query: 420 TARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 473
TARAG+ G CFT L K EVK F K+L+KADN SC +HS+P +E+LRPV+ S
Sbjct: 434 TARAGESGSCFTFLRKHEVKAFDKMLKKADNSSCSLHSLPEESVETLRPVFSSA 487
>sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3
Length = 666
Score = 274 bits (700), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 177/494 (35%), Positives = 253/494 (51%), Gaps = 87/494 (17%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 217 GISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLS 276
Query: 52 RAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQV 111
R V +RALVVLPT++LA QV+ +F + D
Sbjct: 277 RVVCHIRALVVLPTKELAQQVS---------KVFNIYTD--------------------- 306
Query: 112 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 171
A L V L GQ S+A E L+++ + DI+V
Sbjct: 307 ---------ATPLRVSLVTGQKSLAKEQESLVQK-------------TADGYRCLADIVV 344
Query: 172 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 231
ATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+ F
Sbjct: 345 ATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAA-------FQSED 397
Query: 232 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 291
P A L+ + V P L K++ SATLTQ+P KL QL LH P +TG
Sbjct: 398 PADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTG 455
Query: 292 --------------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 337
+Y P L + + C KPL ++ L+ +G + + FT+S E
Sbjct: 456 LAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRE 515
Query: 338 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 397
++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DA RG+DV+G
Sbjct: 516 NSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQG 573
Query: 398 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS 457
V VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +A H
Sbjct: 574 VELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLTEAGAPELQRHE 633
Query: 458 IPSSLIESLRPVYK 471
+ S L++ L P Y+
Sbjct: 634 LSSKLLQPLVPRYE 647
>sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio rerio GN=ddx51 PE=2 SV=1
Length = 652
Score = 272 bits (695), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 175/490 (35%), Positives = 247/490 (50%), Gaps = 84/490 (17%)
Query: 2 GISSLFPVQVAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSN 51
GI S FPVQ V E++G GL RD+C+++PTGSGKTL++ +P+VQ LS
Sbjct: 208 GIQSFFPVQAEVIPAILESVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSK 267
Query: 52 RAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQV 111
R VR +RAL VLPT++LA QV+
Sbjct: 268 RVVRQVRALAVLPTKELAQQVS-------------------------------------- 289
Query: 112 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 171
+VF+A L V + GQ S A E + L ++ G+ + S DI+V
Sbjct: 290 -NVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRGGVSH----------SMADIVV 335
Query: 172 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 231
ATPGRL+DHIN F+L+HL +L++DE DR++ +Q+WL V + S + S
Sbjct: 336 ATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQSWLSQVTKAVYSTPGE--THTS 393
Query: 232 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTT 290
F + G + P L K++ SATLTQ+P KL LDLH P LF +T
Sbjct: 394 VFRRTVPGPITAASLS--------PPQIPLQKLLFSATLTQNPEKLQLLDLHQPRLFSST 445
Query: 291 ---------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 341
+ + P+ L Y + C KPL ++ L L + FT+S E HR
Sbjct: 446 HSLTDNPAQSQDTFHFPQGLSEYYVPCTFSKKPLIILHFLLRLKFSPALCFTNSREGAHR 505
Query: 342 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 401
L L+ FG +++ E+S R KTLK F +GKI +L+S+DA RG+D+ GV V
Sbjct: 506 LYLLVKLFGG--VEVAEFSSKLSPGERQKTLKDFEKGKIPLLISTDAAARGIDINGVKCV 563
Query: 402 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSS 461
+NYD P YI+TYIHR GRTARAG+ G FT L K + KRF K++ A + +
Sbjct: 564 INYDAPQYIRTYIHRVGRTARAGKAGLAFTFLLKVQEKRFLKMVSDAGSPGIQKQHVHPE 623
Query: 462 LIESLRPVYK 471
++S+ Y+
Sbjct: 624 ALKSMESRYE 633
>sp|Q6P9R1|DDX51_MOUSE ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=2 SV=1
Length = 639
Score = 263 bits (671), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 170/500 (34%), Positives = 253/500 (50%), Gaps = 94/500 (18%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GI+S FPVQ AV IG G ++ DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 189 GITSYFPVQAAVIPALLESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLH 248
Query: 52 RAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQV 111
R V +RALVVLPT++LA QV+ +F + D
Sbjct: 249 RVVCHIRALVVLPTKELAQQVS---------KVFNIYTD--------------------- 278
Query: 112 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 171
L V L GQ S+A E L+++ + DI+V
Sbjct: 279 ---------TTPLRVALVTGQKSLAKEQESLVQK-------------TADGFRCLADIVV 316
Query: 172 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 231
ATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+ A+
Sbjct: 317 ATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVA------------AA 364
Query: 232 TFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 288
+ GS ++R + P L K++ SATLTQDP KL +L L+ P
Sbjct: 365 FYSEGPTGSCALLQRTQPQALTAASTCVPQMPLQKLLFSATLTQDPEKLQRLGLYQPRLF 424
Query: 289 TT---------------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 333
+T +Y P L + + C KPL ++ L+ + + + FT
Sbjct: 425 STRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSRALCFT 484
Query: 334 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 393
+S E++HRL L FG + + E+S R K LK F +GKIQ+L+S+DA RG+
Sbjct: 485 NSRENSHRLYLLAQAFGG--VSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATARGI 542
Query: 394 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 453
DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K + ++F +++ +A
Sbjct: 543 DVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERKFLQMVSEAGVPEL 602
Query: 454 PIHSIPSSLIESLRPVYKSG 473
H IP L++ L Y++
Sbjct: 603 THHEIPRKLLQPLVARYETA 622
>sp|Q54BD6|DDX51_DICDI Probable ATP-dependent RNA helicase ddx51 OS=Dictyostelium
discoideum GN=ddx51 PE=3 SV=1
Length = 563
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 168/499 (33%), Positives = 259/499 (51%), Gaps = 82/499 (16%)
Query: 2 GISSLFPVQ---VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR 58
I +LFPVQ V T G D+C+ +PTGSGKTL+YA+P+VQ + R VR +R
Sbjct: 34 SIINLFPVQQEIVPFINRTEG-----HDICVCAPTGSGKTLAYAIPLVQKIVKRVVRRVR 88
Query: 59 ALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAI 118
V++PT DL +QV + F +I
Sbjct: 89 VAVIVPTHDLVIQV---------------------------------------EKTFQSI 109
Query: 119 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 178
L V L++G E LIK Y +S VDI+V+TPGR++
Sbjct: 110 IKGTDLVV-LSLGVKPFHIEQKLLIKNHSYGEHALY---------ESLVDIIVSTPGRIV 159
Query: 179 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE-NRFSDASTFLPSA 237
DHIN T GFTL++L YLV+DE DRLLR+++Q WL V+ T ++ N+ + ++
Sbjct: 160 DHINETLGFTLKYLNYLVIDEADRLLRQSFQDWLEIVIDSTNQHSDLNQQQEEQLIKYNS 219
Query: 238 FGSLKTIRRCGVERGFKDKPYP------RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 291
G ++ + + ++ +LVK++LSAT+T +P+K++ L L+ PLF TT
Sbjct: 220 KGDIELFEKSISLKDNNNQMNHLCWSEFKLVKLLLSATMTYNPSKISLLQLNAPLFFTTS 279
Query: 292 ETR---YKLPERLESYKLICESKLKPLYLVALL-QSL--------GEEKCIVFTSSVEST 339
+T+ Y +P L+ +I KPL L+ ++ +SL ++K I FT SV+ T
Sbjct: 280 KTKEIKYSMPSTLKECYIISNGDQKPLVLLNIIYESLLKNNANGENKKKIICFTKSVDIT 339
Query: 340 HRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 396
HRL TLL G+ L+ +EYS R+ L F+ +I +L+ SD M+RGMD++
Sbjct: 340 HRLNTLLKLIGQVDKLKFTCEEYSSSLSTVERADLLSRFKLNQIDILICSDIMSRGMDIQ 399
Query: 397 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIH 456
++ V+NY+ P I Y+HR GRTARAG G +T++ K E+K + +++KA+ S +H
Sbjct: 400 DIDVVINYNTPPNITLYVHRVGRTARAGNFGVSYTIVDKSEIKYYISMMKKAER-SQTLH 458
Query: 457 SI--PSSLIESLRPVYKSG 473
+ ++ E + YK G
Sbjct: 459 CLKWKPNVYEKFQSSYKLG 477
>sp|P26802|DDX51_DROME Probable ATP-dependent RNA helicase Dbp73D OS=Drosophila
melanogaster GN=Dbp73D PE=2 SV=3
Length = 687
Score = 225 bits (574), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 163/481 (33%), Positives = 233/481 (48%), Gaps = 97/481 (20%)
Query: 1 MGISSLFPVQVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
M I LFPVQ V W P RD+C+++PTGSGKTL++A+PIVQ LS R
Sbjct: 155 MKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDC 214
Query: 56 CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVF 115
+RALVVLP +LALQV I+E+C + +
Sbjct: 215 KVRALVVLPVAELALQVYRV-----------------ISELCSKTE-------------- 243
Query: 116 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 175
L V L Q + DE +L+++ K G Y S DI+V TPG
Sbjct: 244 --------LEVCLLSKQHKLEDEQEKLVEQYK---GKYY----------SKADIVVTTPG 282
Query: 176 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 235
RL+DH++AT+GF L+ L +LV+DE DR++ +Q WL + + + A T P
Sbjct: 283 RLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTDQLL--AGTQAP 340
Query: 236 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-- 293
+ L+ F +P+ K++ SATL+QDP KL L L P T T
Sbjct: 341 LCYAELQA--------SFGKQPH----KLLFSATLSQDPEKLQDLRLFQPRLFATVLTMP 388
Query: 294 -----------------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 330
RY P L + E +LKPL + AL++ ++ +
Sbjct: 389 VLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRFL 448
Query: 331 VFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 389
FT+S + RL +L F + K+ E SG VR++ L+ F GKI L+ SDA+
Sbjct: 449 CFTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAAGKINGLICSDAL 508
Query: 390 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 449
RG+DV V+ V++Y+ P +I TYIHR GRTARAG+ G T+L + ++ FKK+L A+
Sbjct: 509 ARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQDMTLFKKILSDAN 568
Query: 450 N 450
Sbjct: 569 K 569
>sp|Q76PD3|DBP6_SCHPO ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dbp6 PE=2 SV=1
Length = 604
Score = 203 bits (517), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 152/479 (31%), Positives = 221/479 (46%), Gaps = 101/479 (21%)
Query: 2 GISSLFPVQVAVWQETIGPGL------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
I+ F VQ AV + G + D+C+++ TGSGKTLSY +PIVQ LS+R V
Sbjct: 145 NITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVP 204
Query: 56 CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVF 115
LR +V++PTR+L +QV F
Sbjct: 205 RLRCVVIVPTRELTVQV---------------------------------------AKTF 225
Query: 116 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 175
GL V GQ S+ E +L E + +D+LV+TPG
Sbjct: 226 EYYMSGAGLQVCAWTGQKSLRHETYQLNG----------------DENECRIDVLVSTPG 269
Query: 176 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS----DNENRFSD-- 229
RL+DHI F+L+HL Y+V+DE DRLL +++Q W+ TV+ N++ D
Sbjct: 270 RLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKSNILDLD 329
Query: 230 ---ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 286
+ TFLP +L R P P L K+V SATLT+DP+K+A L LH+P
Sbjct: 330 QNISPTFLPD-IDTLLPYRL----------PSP-LQKLVFSATLTRDPSKIASLKLHNPR 377
Query: 287 FLTT----------GETR-----YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 331
+ GE + +P L+ Y + S+ KP+ L L+ S +
Sbjct: 378 LVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSSE-KPILLYHLIHSKNLTNILC 436
Query: 332 FTSSVEST---HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 388
F S E+ HRL L++ ++ + R K + F G + +LV SD
Sbjct: 437 FVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDL 496
Query: 389 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 447
M RG+DV NV+NYD P +++Y+HR GRTARAG+ G +TL+ E F KL+++
Sbjct: 497 MARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFAWTLVQSHEGHHFSKLVKQ 555
>sp|A2QA23|DBP6_ASPNC ATP-dependent RNA helicase dbp6 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=dbp6 PE=3 SV=1
Length = 593
Score = 198 bits (504), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 164/453 (36%), Positives = 221/453 (48%), Gaps = 88/453 (19%)
Query: 19 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 78
GP DLCI++ TGSGKTLSY LP+V L LR L+V+PTR+L Q A C+
Sbjct: 158 GPTNHPGDLCISAATGSGKTLSYVLPLVTALKPLPAPRLRGLIVVPTRELVKQAREA-CE 216
Query: 79 YCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADE 138
C A GL V AVG +I DE
Sbjct: 217 LC--------------------------------------AAGSGLRVASAVGNVAIKDE 238
Query: 139 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 198
E + G + E VDIL+ TPGRL+DH+ T+GFTL++L +LV+D
Sbjct: 239 QRESL------PGYVHRSE-------PNVDILICTPGRLVDHLRYTKGFTLKNLEWLVID 285
Query: 199 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG-SLKTIRRCGVERGFKDKP 257
E DRLL E++Q W+ V+ S + P AFG S + G+ K+
Sbjct: 286 EADRLLNESFQEWVDVVMT----------SLDARKAPDAFGFSGNFLSGLGLPIQSKE-- 333
Query: 258 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG----------------ETRYKLPERL 301
PR K+VLSAT+T+D KL L L +P + G + ++ LP L
Sbjct: 334 -PR--KVVLSATMTRDVTKLNSLRLANPKLVVIGSDAAATEDESGGVAPSDEQFTLPPTL 390
Query: 302 ESYKL-ICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIK 357
E + + + + KPLYL+ LL S E K +VFT S ES RL LL L +I
Sbjct: 391 EEHTVSVGDGSQKPLYLLRLLLSHIKLETKILVFTKSSESASRLARLLALLEPSLSDRIG 450
Query: 358 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 417
+ S KTL A+R GKI V++++D +RG+D+ + +VVNYD PA I TY+HR
Sbjct: 451 TIIKSNKSSASRKTLTAYRRGKISVIIATDRASRGLDLRSLTHVVNYDVPASITTYVHRV 510
Query: 418 GRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 450
GRTARAGQ G +TL+ E K F + K +
Sbjct: 511 GRTARAGQKGSAWTLVAHREGKWFASQIAKGSD 543
>sp|A5E726|DBP6_LODEL ATP-dependent RNA helicase DBP6 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=DBP6 PE=3 SV=1
Length = 663
Score = 186 bits (471), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 149/471 (31%), Positives = 224/471 (47%), Gaps = 116/471 (24%)
Query: 1 MGISSLFPVQVAVWQE--------TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 52
+G + F VQV V + + P F D+ +N+ TGSGKTL+Y++PI+++L +R
Sbjct: 240 LGFENAFAVQVGVLSKLLPEIQANKLRPDAFG-DVLVNASTGSGKTLAYSIPIIESLKDR 298
Query: 53 AVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVK 112
V +RA+V++PT+ L +N R
Sbjct: 299 VVPRVRAIVLVPTKPL---INQVR------------------------------------ 319
Query: 113 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 172
A + L++G + S+ ++IS R + E I P D++++
Sbjct: 320 ------ATMLQLALGTNLNIVSLKNDIS---IREESERLIELVP-----------DVVIS 359
Query: 173 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 232
TPGRL++H+ A +L L YLVVDE DRLL +++Q W ++ ++
Sbjct: 360 TPGRLVEHL-AMDSISLSSLRYLVVDEADRLLNQSFQNWSQILI--------SKIHLQQV 410
Query: 233 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 292
+ + SLK + K + SATLT D KLA LD H+P L +
Sbjct: 411 YDVANVWSLK------------------VQKFIFSATLTTDAGKLASLDFHNPRLLIVND 452
Query: 293 TR------YKLPERLESYKL---ICESKLKPLYLVALLQSLGEEK---CIVFTSSVESTH 340
++ + +P L YKL + +S LKPL L L + +EK +VFT S ES+
Sbjct: 453 SQRLVNELFSVPAMLSEYKLNFGVAKSSLKPLILAKFL--IAQEKLSDVLVFTKSNESSI 510
Query: 341 RLCTLLNH-FGELRIKIKEYSGL-----QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 394
RLCTLL F + ++ K G R S+RSK LK F KI +LV++D + RG+D
Sbjct: 511 RLCTLLQAIFDRICLQEKVKVGFMNLTNNRTSLRSKILKDFTSQKINILVATDLIARGLD 570
Query: 395 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRFKKL 444
V + +VVNYD + Y+HR GRTARA Q G + L+ K E K FK +
Sbjct: 571 VTSIKDVVNYDLLNSSREYVHRVGRTARANQAGNAYNLVFGKGEEKWFKTI 621
>sp|A3LSJ2|DBP6_PICST ATP-dependent RNA helicase DBP6 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=DBP6 PE=3 SV=2
Length = 591
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 129/435 (29%), Positives = 202/435 (46%), Gaps = 103/435 (23%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIF 85
D+ +N+ TGSGKTL+Y++PI++ L NR V +RA+V++PT+ L
Sbjct: 203 DILVNAATGSGKTLAYSIPIIEALHNRVVPRVRAIVLVPTKPL----------------- 245
Query: 86 GLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 145
+ QVK F ++ LSV SI +E +++
Sbjct: 246 ----------------------INQVKATFVQLSRGTNLSVVSLRNDVSIKEEGIKIVNS 283
Query: 146 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 205
P DI+V+TPGRL++HI + + L L +LV+DE DRLL
Sbjct: 284 PP--------------------DIIVSTPGRLVEHI-SNKSINLNSLQFLVIDEADRLLN 322
Query: 206 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 265
+++Q W ++ D + +K P K++
Sbjct: 323 QSFQNWCQVLISSLEGD------------------------VNIAEEWKITPQ----KLI 354
Query: 266 LSATLTQDPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKL---ICESKLKPLY 316
SATLT D KL+ L P + + + + +P L Y + ++ +KPL
Sbjct: 355 FSATLTTDSGKLSALKFQKPRLVIVNDRKQLVNEIFNVPSSLSEYTIQFGTAKASIKPLI 414
Query: 317 LVA-LLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIK-EY--SGLQRQSVRSKT 371
L LL++ ++FT S E++ RLC LL FG+L + Y S + ++R+K
Sbjct: 415 LAKYLLENNKLSNVLIFTKSNEASIRLCKLLELMFGKLHPSMNIAYINSTNNKSAIRTKI 474
Query: 372 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 431
LK F KI +LV++D + RG+D+ + +V+NYD P + Y+HR GRTARA Q G +T
Sbjct: 475 LKDFSTQKINILVATDLIARGIDILSITDVINYDLPNSSREYVHRVGRTARANQTGHAYT 534
Query: 432 L-LHKDEVKRFKKLL 445
L K E K FKK++
Sbjct: 535 LCFGKGEAKWFKKII 549
>sp|A5DK47|DBP6_PICGU ATP-dependent RNA helicase DBP6 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DBP6 PE=3 SV=2
Length = 631
Score = 175 bits (444), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 154/473 (32%), Positives = 221/473 (46%), Gaps = 119/473 (25%)
Query: 2 GISSLFPVQVAVWQ--------ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 53
G SS F VQV+V + + I P + DL +N+ TGSGKTL YA+PI+++L NR
Sbjct: 210 GFSSAFSVQVSVLKLLLPDMESQAIRPDI-GGDLLVNAATGSGKTLGYAIPIIESLRNRI 268
Query: 54 VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKD 113
V +RA+V++PT+ L + QVK
Sbjct: 269 VPRVRAIVLVPTKPL---------------------------------------ISQVKA 289
Query: 114 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 173
FA ++ LSV SI DE Q LQ DI+V+T
Sbjct: 290 TFAMLSKNTNLSVVSLRSDISINDEA---------------------QRLQVVPDIIVST 328
Query: 174 PGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 232
PGRL++H+ T G L+ L YLV+DE DRLL +++Q W T+ ++R D+ N S+
Sbjct: 329 PGRLVEHL--TNGHINLKSLRYLVIDEADRLLNQSFQNWCETL--MSRIDS-NPISELD- 382
Query: 233 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 292
+T R P + K+V SATLT D +L+ L L P + +
Sbjct: 383 ---------QTWR-------------PSVQKLVFSATLTTDAGRLSMLKLQRPRLIIVND 420
Query: 293 TR------YKLPERLESYKL---ICESKLKPLYLVALLQSLGEEKCI---VFTSSVESTH 340
+ +P L+ YKL S KPL L L S E+K + VF S E++
Sbjct: 421 RHELVNELFTVPATLQEYKLSLGSARSSAKPLVLAKFLMS--EQKLVNTLVFAKSNEASL 478
Query: 341 RLCTLLNH----FGELRIKIKEYSGLQR-QSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 395
RLC LL FG L + + + S R+K LK F + +LV +D + RG+D+
Sbjct: 479 RLCRLLQLLFRVFG-LDVTVSYLNSTNNAASTRAKILKDFANQTVHILVVTDLIARGIDI 537
Query: 396 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDEVKRFKKLLQK 447
+ NV+NYD P + Y+HR GRTARA Q G +T+ K E K F +L+++
Sbjct: 538 ATITNVINYDLPNSSRDYVHRVGRTARANQDGEAYTMCFGKGETKWFTQLVRE 590
>sp|Q6BPT8|DBP6_DEBHA ATP-dependent RNA helicase DBP6 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DBP6 PE=3 SV=2
Length = 576
Score = 175 bits (443), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 144/471 (30%), Positives = 218/471 (46%), Gaps = 112/471 (23%)
Query: 1 MGISSLFPVQVAVW--------QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 52
MG S F VQ++V + + P + DL +N+ TGSGKTL+Y++PI+++L
Sbjct: 148 MGFESAFSVQISVLNLMLKDIERNRLQPDM-RGDLLVNASTGSGKTLAYSIPIIESLQTV 206
Query: 53 AVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVK 112
V +RA++++PT+ L + QVK
Sbjct: 207 KVPRVRAIILVPTKPL---------------------------------------INQVK 227
Query: 113 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV-DILV 171
++ LS+ S+ +++S IK E GI +LQ+ DI+V
Sbjct: 228 TTLNQLSKGTNLSI------VSLKNDLS--IK----EEGI---------KLQTNEPDIIV 266
Query: 172 ATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 230
+TPGRL+DH+ T G+ +L++L YLV+DE DRLL +++Q W
Sbjct: 267 STPGRLVDHL--TNGYISLKNLQYLVIDEADRLLNQSFQNW------------------- 305
Query: 231 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 290
L S I+ + +K + KM+ SATLT D KL+ L H P +
Sbjct: 306 CQILISKIDEFTNIKERNISNSWK----LNVQKMIFSATLTTDAGKLSLLKFHKPRLIIV 361
Query: 291 GETR------YKLPERLESYKL---ICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTH 340
+ LP L +KL +S LKPL L L S + ++FT S +++
Sbjct: 362 NNKEQLVNEMFSLPATLNEFKLQFGSAKSSLKPLILSKFLLSKNKLANVLIFTKSNDASL 421
Query: 341 RLCT----LLNHFGELRIKIKEYSGLQRQ-SVRSKTLKAFREGKIQVLVSSDAMTRGMDV 395
RL ++N G I I + SVRSK LK F + I +LV++D + RG+D+
Sbjct: 422 RLSRLLSLIMNKLGSETINIAYINSTNNTTSVRSKILKDFSKQTINILVATDLIARGIDI 481
Query: 396 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDEVKRFKKLL 445
+ +V+NYD P + Y+HR GRTARA Q G + K E K FKKL+
Sbjct: 482 LSITDVINYDLPNSSREYVHRVGRTARANQEGFAYNFCFGKGEAKWFKKLM 532
>sp|A7TFZ9|DBP6_VANPO ATP-dependent RNA helicase DBP6 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DBP6 PE=3 SV=1
Length = 637
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 140/456 (30%), Positives = 210/456 (46%), Gaps = 124/456 (27%)
Query: 7 FPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLSNRA 53
FP+Q ++ ET+ P L F R D+ +N+ TGSGKTL+Y++PI+Q LS R
Sbjct: 199 FPIQ-SILLETLLPTLNFSYNITKKNFTRRVGDVLVNASTGSGKTLAYSIPILQILSKRT 257
Query: 54 VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKD 113
V LRALV++PT+ L + QV +
Sbjct: 258 VNKLRALVIVPTKLL---------------------------------------INQVYE 278
Query: 114 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 173
F +A L V ++ ++S+ +E +L LQ+ DIL+ T
Sbjct: 279 TFNNLAQGTSLIVSISKLENSLKEENKKL--------------------LQNEPDILITT 318
Query: 174 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 233
PGRL+DH+ + L +L +LV+DE DRLL +++Q W +L ++D ++
Sbjct: 319 PGRLVDHLQSG-AVNLRNLKFLVLDEADRLLNQSFQNWCNELLNKLKTDKQDH------- 370
Query: 234 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGE 292
+P +VKMV SATLT + KL L ++P LF+
Sbjct: 371 MPG-----------------------NIVKMVFSATLTTNTEKLHGLQFYNPKLFVMDSV 407
Query: 293 TRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 349
Y LP L+ Y L ++ KPL+L+ LL + K +VF S ES+ RL +L
Sbjct: 408 KLYHLPRMLQEYNLHIPTAKTSYKPLFLLRLLSEINGSKMLVFVKSNESSLRLASL---- 463
Query: 350 GELRIKIKEYSGLQRQSVRSKTLKA------------FREGKIQVLVSSDAMTRGMDVEG 397
+ I+ K S SV S KA K+QVL+++D M+RG+D+
Sbjct: 464 LSIMIEHKLGSQFDINSVNSNNTKAENRRIVNEFASNNNTSKVQVLITTDVMSRGVDIND 523
Query: 398 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 433
+ +V+NYD P + YIHR GRTARA G + +L
Sbjct: 524 ITDVLNYDVPISSQQYIHRCGRTARAQSKGTAYNML 559
>sp|Q6FST5|DBP6_CANGA ATP-dependent RNA helicase DBP6 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP6 PE=3 SV=1
Length = 651
Score = 172 bits (435), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 137/454 (30%), Positives = 216/454 (47%), Gaps = 115/454 (25%)
Query: 5 SLFPVQVAVWQETI---------GPGLFER---DLCINSPTGSGKTLSYALPIVQTLSNR 52
S FP+Q A+ + + F R D+ +N+ TGSGKTL+Y++PI+QTLS+R
Sbjct: 215 STFPIQTAMLDQYLKLINFTLKTSKKNFTRRIGDILVNASTGSGKTLAYSIPIIQTLSSR 274
Query: 53 AVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVK 112
V LR L++LPT+ L QV F ++ Q
Sbjct: 275 TVNKLRVLIILPTKLLINQV--------------------------------FQTMSQ-- 300
Query: 113 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 172
+A L + ++ ++S +E L+K + DI +
Sbjct: 301 -----LAEGTSLVITVSKLENSFNEEHKRLLK--------------------TEPDIFIT 335
Query: 173 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 232
TPGRL+DH+ +L +L +LV+DE DRLL +++Q W+P V+ +SD ++
Sbjct: 336 TPGRLVDHL-TNSSISLRNLKFLVLDEADRLLNQSFQNWIPEVMSKFKSDKFDQ------ 388
Query: 233 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTG 291
+P + ++KMV SATLT + KL L L++P LF T
Sbjct: 389 -MPGS-----------------------IIKMVFSATLTTNTEKLNDLQLYNPTLFATDS 424
Query: 292 ETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN- 347
Y LP L+ Y+L +S KPLYL+ LL+ L K +VF S ES+ +L LL
Sbjct: 425 VKLYNLPPTLQEYQLQIPSAKSVYKPLYLLKLLEQLSGGKTLVFVRSNESSLKLEVLLKS 484
Query: 348 ----HFGELRIKIKEYSGLQRQSVRSKTLKAFRE----GKIQVLVSSDAMTRGMDVEGVN 399
H L+I + + ++ + + F + + VL+++D M+RG+D+E +
Sbjct: 485 LIKGHMTTLQIVVHSINSNNSKAENRRLVTDFTKESLPNQTNVLITTDLMSRGIDIENIA 544
Query: 400 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 433
NV+NYD P + Y+HR GRTARA + G+ + +L
Sbjct: 545 NVINYDVPISSQQYVHRCGRTARANKDGKAYNML 578
>sp|Q59MW2|DBP6_CANAL ATP-dependent RNA helicase DBP6 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DBP6 PE=3 SV=1
Length = 606
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 131/466 (28%), Positives = 211/466 (45%), Gaps = 110/466 (23%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFER-------DLCINSPTGSGKTLSYALPIVQTLSNRA 53
MG + F VQ++V + ++ D+ +N+ TGSGKTL+Y++PI+++L R
Sbjct: 187 MGFTEAFSVQISVLNMMLPEIEAQKLKPDRVGDILVNASTGSGKTLAYSIPIIESLYRRV 246
Query: 54 VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKD 113
V +R ++++PT+ L + QVK
Sbjct: 247 VPRVRVIILVPTKPL---------------------------------------INQVKS 267
Query: 114 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 173
++ L + SI DE L K S DI+V+T
Sbjct: 268 TLLQLSSGTNLQIAALKNDVSINDEKDSLTK--------------------SVPDIIVST 307
Query: 174 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 233
PGRL++H+ L L YL++DE DRLL +++Q W +L S
Sbjct: 308 PGRLVEHL-LNDSINLSSLQYLIIDEADRLLNQSFQNWSNVLLDKIDSQ----------- 355
Query: 234 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 293
++ + + V+ K+V SATLT D KL+ L ++P + ++
Sbjct: 356 -----INIAEVWKLSVQ------------KLVFSATLTTDAGKLSSLKFYNPRLIIVNDS 398
Query: 294 R------YKLPERLESYKL---ICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTHRLC 343
+ + +P L +K+ + ++ LKPL L L S + ++FT S ES+ RL
Sbjct: 399 KQLVNEIFTVPVTLSEFKIHLGVAKNSLKPLILTKFLISTNKLSNVLIFTKSNESSIRLT 458
Query: 344 TLL-NHFGELRIKIKE---YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 399
LL + F +L I +K S R S+RSK LK F ++ +L+++D + RG+DV +
Sbjct: 459 ELLISLFQKLSINLKIAFINSTNNRTSIRSKILKQFSNQEVNILITTDLIARGIDVASIT 518
Query: 400 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDEVKRFKKL 444
+V+NYD P + Y+HR GRTARA Q+G ++ K E F KL
Sbjct: 519 DVINYDLPNSSREYVHRVGRTARANQVGYAYSFCFGKGENSWFNKL 564
>sp|P53734|DBP6_YEAST ATP-dependent RNA helicase DBP6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP6 PE=1 SV=1
Length = 629
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 143/512 (27%), Positives = 229/512 (44%), Gaps = 133/512 (25%)
Query: 4 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 50
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 195 TNTFPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 253
Query: 51 NRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQ 110
R + LR ++++PT+ L QV + K
Sbjct: 254 KRQINRLRCIIIVPTKLLINQVYTTLTK-------------------------------- 281
Query: 111 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 170
+ L V +A ++S+ DE +L LE DIL
Sbjct: 282 -------LTQGTSLIVSIAKLENSLKDEHKKL---SNLEP-----------------DIL 314
Query: 171 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 230
+ TPGRL+DH+N + L++L +L++DE DRLL +++Q W P ++ ++D +
Sbjct: 315 ITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQGWCPKLMSHLKTDKLDT---- 369
Query: 231 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLT 289
LP ++KM+ SATLT + KL L+L+ P LFL
Sbjct: 370 ---LPG-----------------------NVIKMIFSATLTTNTEKLNGLNLYKPKLFLK 403
Query: 290 TGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSLGEE----KCIVFTSSVESTHR 341
+ Y+LP +L + + +S KPL L+ ++ Q + K ++F S ES+ R
Sbjct: 404 QTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSNESSIR 463
Query: 342 LCTLLNHFGELRIKIKEYSGLQR-------------QSVRSKTLKAF----REGKIQVLV 384
L LL E R + LQ ++ K + F I +L+
Sbjct: 464 LSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHHSESAGITILI 523
Query: 385 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL-HKDEVKRFKK 443
++D M+RG+D+ + V+NYD P + Y+HR GRTARA +LG + LL + E F
Sbjct: 524 TTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGERTFFDD 583
Query: 444 LLQKADNDSCPIH--SIPSSLIESLRPVYKSG 473
L + D D + + +L+ES +Y S
Sbjct: 584 LNKDLDRDGKSVQPLELDFTLLESDSELYTSS 615
>sp|A6ZSB3|DBP6_YEAS7 ATP-dependent RNA helicase DBP6 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP6 PE=3 SV=1
Length = 629
Score = 169 bits (427), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 143/512 (27%), Positives = 229/512 (44%), Gaps = 133/512 (25%)
Query: 4 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 50
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 195 TNTFPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 253
Query: 51 NRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQ 110
R + LR ++++PT+ L QV + K
Sbjct: 254 KRQINRLRCIIIVPTKLLINQVYTTLTK-------------------------------- 281
Query: 111 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 170
+ L V +A ++S+ DE +L LE DIL
Sbjct: 282 -------LTQGTSLIVSIAKLENSLKDEHKKL---SNLEP-----------------DIL 314
Query: 171 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 230
+ TPGRL+DH+N + L++L +L++DE DRLL +++Q W P ++ ++D +
Sbjct: 315 ITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQGWCPKLMSHLKTDKLDT---- 369
Query: 231 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLT 289
LP ++KM+ SATLT + KL L+L+ P LFL
Sbjct: 370 ---LPG-----------------------NVIKMIFSATLTTNTEKLNGLNLYKPKLFLK 403
Query: 290 TGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSLGEE----KCIVFTSSVESTHR 341
+ Y+LP +L + + +S KPL L+ ++ Q + K ++F S ES+ R
Sbjct: 404 QTDKLYQLPNKLNEFNINIPTAKSIYKPLILLYSICQFMAHSPIAAKILIFVKSNESSIR 463
Query: 342 LCTLLNHFGELRIKIKEYSGLQR-------------QSVRSKTLKAF----REGKIQVLV 384
L LL E R + LQ ++ K + F I +L+
Sbjct: 464 LSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHPSESAGITILI 523
Query: 385 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL-HKDEVKRFKK 443
++D M+RG+D+ + V+NYD P + Y+HR GRTARA +LG + LL + E F
Sbjct: 524 TTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGERTFFDD 583
Query: 444 LLQKADNDSCPIH--SIPSSLIESLRPVYKSG 473
L + D D + + +L+ES +Y S
Sbjct: 584 LNKDLDRDGKSVQPLELDFTLLESDSELYTSS 615
>sp|Q6CKZ4|DBP6_KLULA ATP-dependent RNA helicase DBP6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DBP6 PE=3 SV=1
Length = 630
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 131/461 (28%), Positives = 212/461 (45%), Gaps = 122/461 (26%)
Query: 4 SSLFPVQVAVWQETI---------GPGLFER---DLCINSPTGSGKTLSYALPIVQTLSN 51
S FP+Q ++ + + LF R D+ +N+ TGSGKTL+Y++P+VQ L +
Sbjct: 196 SETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGKTLAYSVPLVQILRS 255
Query: 52 RAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQV 111
R V +RA++++PT+ I + QV
Sbjct: 256 RTVNKVRAIILVPTK---------------------------------------ILIHQV 276
Query: 112 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 171
D + ++ L+V ++ ++S+ +E ++ L ++ DIL+
Sbjct: 277 YDCLSKLSQGTSLNVSMSKLENSLKEEHNKF--------------------LYNSPDILI 316
Query: 172 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 231
TPGRL+DH+ F L+ L +LV+DE DRLL +++Q W + +D ++
Sbjct: 317 ITPGRLVDHLQM-ESFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQD------ 369
Query: 232 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTT 290
+R G ++KMV SATLT + KL L LH+P +FLT
Sbjct: 370 -------------KRPG-----------NVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
Query: 291 GETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEE-----KCIVFTSSVESTHRL 342
Y +P++L+ + +S KPL L+ ++ + K +VF S E++ RL
Sbjct: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRL 465
Query: 343 CTLLNHFGELRIKIKEY--------SGLQRQSVRSKTLKAF--REGKIQVLVSSDAMTRG 392
+LL+ I EY S + + S R K ++ F E K VL+S+D M RG
Sbjct: 466 ESLLHAMLGSGIIEDEYNMFLSSIHSNISKGSSR-KLIQEFASSEQKKSVLISTDIMARG 524
Query: 393 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 433
+D+ + +V+NYD P + Y+HR GRTARA G LL
Sbjct: 525 IDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
>sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis (strain
RS) GN=RRP3 PE=3 SV=1
Length = 474
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 130/437 (29%), Positives = 194/437 (44%), Gaps = 104/437 (23%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P Q+ E+I L RDL + TGSGKT ++ALPI+Q L ++ + + LV+ PTR+
Sbjct: 71 PTQIQA--ESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKP-QSMFGLVLAPTRE 127
Query: 68 LALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVG 127
LA Q++ F A+ + +
Sbjct: 128 LAYQISQQ---------------------------------------FEALGSLISVRCA 148
Query: 128 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 187
+ VG + + L K+P I+VATPGRL+DH+ T+GF
Sbjct: 149 VIVGGMDMVSQAIALGKKPH---------------------IIVATPGRLLDHLENTKGF 187
Query: 188 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 247
+L L YLV+DE DRLL + L +L++ LP RR
Sbjct: 188 SLRSLKYLVMDEADRLLDLDFGPILDKILKV---------------LPKE-------RRT 225
Query: 248 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI 307
+ SAT++ L + L +PL ++ +Y+ L LI
Sbjct: 226 ----------------YLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQNCLI 269
Query: 308 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 367
K K +YL+ LL + I+FT +V T RL LL G I + G QS
Sbjct: 270 IPHKHKDIYLIYLLNEFPGQSVIIFTRTVNETQRLAILLRALGFGAIPLH---GQLSQSA 326
Query: 368 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 427
R L FR +LV++D RG+D+ V+ V+NYD P+ KTYIHR GRTARAG+ G
Sbjct: 327 RLGALGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSG 386
Query: 428 RCFTLLHKDEVKRFKKL 444
R F+L+ + +V+ ++++
Sbjct: 387 RAFSLVTQYDVEIWQRI 403
>sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47
PE=2 SV=2
Length = 455
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 125/437 (28%), Positives = 197/437 (45%), Gaps = 105/437 (24%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVG 127
LA Q++ + F A+ ++G+
Sbjct: 104 LAFQIS---------------------------------------EQFEALGSSIGVQCA 124
Query: 128 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 187
+ VG + L K+P I++ATPGRL+DH+ T+GF
Sbjct: 125 VIVGGIDSMSQSLALAKKPH---------------------IVIATPGRLIDHLENTKGF 163
Query: 188 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 247
L L YLV+DE DR+L ++ + +L++ D + TFL
Sbjct: 164 NLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-------TFL------------- 203
Query: 248 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI 307
SAT+T+ KL + L +P+ ++Y+ E+L+ Y L
Sbjct: 204 ------------------FSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLF 244
Query: 308 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 367
SK K YLV +L L ++F S+ +T R LL + G I + G QS
Sbjct: 245 IPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPL---HGQMSQSK 301
Query: 368 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 427
R +L F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G
Sbjct: 302 RLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSG 361
Query: 428 RCFTLLHKDEVKRFKKL 444
+ T + + +V+ F+++
Sbjct: 362 KAITFVTQYDVELFQRI 378
>sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulata (strain
NAm1 / WU24) GN=RRP3 PE=3 SV=1
Length = 485
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 131/439 (29%), Positives = 192/439 (43%), Gaps = 106/439 (24%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+G S P+Q E+I L RDL + TGSGKT ++ALPI+Q L N+ + L L
Sbjct: 77 LGYKSPTPIQA----ESIPLALQGRDLIGLAETGSGKTAAFALPILQALMNKP-QSLFGL 131
Query: 61 VVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAP 120
++ PTR+LA Q++ A F A+
Sbjct: 132 ILAPTRELACQISEA---------------------------------------FEALGS 152
Query: 121 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 180
+ + + VG + + L K+P I+VATPGRL+DH
Sbjct: 153 LISVRCAVIVGGMDMVSQAISLGKKPH---------------------IIVATPGRLLDH 191
Query: 181 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240
+ T+GF+L L YLV+DE DRLL + L +L++ LP
Sbjct: 192 LENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKV---------------LPRE--- 233
Query: 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 300
RR + SAT++ L + L +PL ++ +Y+
Sbjct: 234 ----RRT----------------YLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVAT 273
Query: 301 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 360
L L K K +YLV LL + IVFT +V T RL LL G I +
Sbjct: 274 LLQSYLFIPHKYKDIYLVYLLNEYAGQSAIVFTRTVNETQRLAILLRALGFGSIPLH--- 330
Query: 361 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 420
G QS R L FR +LV++D RG+D+ V+ V+N+D P+ KTYIHR GRT
Sbjct: 331 GQLSQSSRLGALSKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRT 390
Query: 421 ARAGQLGRCFTLLHKDEVK 439
ARAG+ G F+++ + +++
Sbjct: 391 ARAGKSGHAFSIVTQYDIE 409
>sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47
PE=2 SV=1
Length = 457
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 125/437 (28%), Positives = 197/437 (45%), Gaps = 105/437 (24%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 49 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 105
Query: 68 LALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVG 127
LA Q++ + F A+ ++G+
Sbjct: 106 LAFQIS---------------------------------------EQFEALGSSIGVQCA 126
Query: 128 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 187
+ VG + L K+P I++ATPGRL+DH+ T+GF
Sbjct: 127 VIVGGIDSMSQSLALAKKPH---------------------IVIATPGRLIDHLENTKGF 165
Query: 188 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 247
L L YLV+DE DR+L ++ + +L++ D + TFL
Sbjct: 166 NLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-------TFL------------- 205
Query: 248 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI 307
SAT+T+ KL + L +P+ ++Y+ E+L+ Y L
Sbjct: 206 ------------------FSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLF 246
Query: 308 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 367
SK K YLV +L L ++F S+ +T R LL + G I + G QS
Sbjct: 247 IPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPL---HGQMSQSK 303
Query: 368 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 427
R +L F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G
Sbjct: 304 RLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSG 363
Query: 428 RCFTLLHKDEVKRFKKL 444
+ T + + +V+ F+++
Sbjct: 364 KAITFVTQYDVELFQRI 380
>sp|Q751D1|DBP6_ASHGO ATP-dependent RNA helicase DBP6 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DBP6
PE=3 SV=1
Length = 607
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 208/452 (46%), Gaps = 115/452 (25%)
Query: 7 FPVQVAVWQE---------TIGPGLFER---DLCINSPTGSGKTLSYALPIVQTLSNRAV 54
FP+Q A+ ++ + R D+ +N+ TGSGKTL+YA+ ++ LS R V
Sbjct: 185 FPIQTALLDSVLPLMSQAYSVSKRYYTRKVGDILVNASTGSGKTLAYAMLLIHILSRRTV 244
Query: 55 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDV 114
LRA++++PT+ L + QV D
Sbjct: 245 NKLRAVILVPTKLL---------------------------------------VHQVYDT 265
Query: 115 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 174
A+A + V ++ +S+ +E ++L + +P D+L+ TP
Sbjct: 266 VQALAKGSSVVVAVSKMDTSLKEESAKLKAQ---------EP-----------DVLIITP 305
Query: 175 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 234
GRL+DH+N + F+L++L +LV+DE DRLL +++Q W
Sbjct: 306 GRLVDHLN-MQTFSLKNLKFLVLDEADRLLNQSFQNWC---------------------- 342
Query: 235 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 294
++ + R ER FK ++KM+ SATLT + +L L LH+P G
Sbjct: 343 ------IELMTRLNAERPFKGPG--NVIKMIFSATLTTNTERLHDLQLHNPKLFLMGSQL 394
Query: 295 YKLPERLESYKL---ICESKLKPLYLVALLQSLGEE--KCIVFTSSVESTHRLCTLL--- 346
Y +P +L+ Y L +S KPL L+ LL L E + +VF S E++ RL LL
Sbjct: 395 YHMPAQLQEYNLPIPTSKSYAKPLILLRLLPLLSTESLRILVFVKSNEASIRLAALLTAM 454
Query: 347 --NHFGELRIKIKEYSGLQRQSVRSKTLKAFR---EGKIQVLVSSDAMTRGMDVEGVNNV 401
N + + + ++ K ++AF G +LVS+D M+RG+D+ G+++V
Sbjct: 455 VGNGLSAVSTTVGSINNNNSKATNRKLIEAFAAGASGHCSILVSTDLMSRGLDISGISHV 514
Query: 402 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 433
+NYD P + Y+HR GRTARA G LL
Sbjct: 515 INYDLPISSQQYVHRCGRTARANTSGTAVNLL 546
>sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47
PE=1 SV=1
Length = 455
Score = 162 bits (410), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 124/437 (28%), Positives = 197/437 (45%), Gaps = 105/437 (24%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVG 127
LA Q++ + F A+ ++G+
Sbjct: 104 LAFQIS---------------------------------------EQFEALGSSIGVQSA 124
Query: 128 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 187
+ VG + L K+P I++ATPGRL+DH+ T+GF
Sbjct: 125 VIVGGIDSMSQSLALAKKPH---------------------IIIATPGRLIDHLENTKGF 163
Query: 188 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 247
L L YLV+DE DR+L ++ + +L++ D + TFL
Sbjct: 164 NLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-------TFL------------- 203
Query: 248 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI 307
SAT+T+ KL + L +P+ ++Y+ E+L+ Y +
Sbjct: 204 ------------------FSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYIF 244
Query: 308 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 367
SK K YLV +L L ++F S+ +T R LL + G I + G QS
Sbjct: 245 IPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPL---HGQMSQSK 301
Query: 368 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 427
R +L F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G
Sbjct: 302 RLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSG 361
Query: 428 RCFTLLHKDEVKRFKKL 444
+ T + + +V+ F+++
Sbjct: 362 KAITFVTQYDVELFQRI 378
>sp|Q96GQ7|DDX27_HUMAN Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens GN=DDX27
PE=1 SV=2
Length = 796
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/473 (27%), Positives = 210/473 (44%), Gaps = 114/473 (24%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLR 58
MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L R R
Sbjct: 236 MGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTR 291
Query: 59 ALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAI 118
LV++PTR+L +QV HS+ QF
Sbjct: 292 VLVLVPTRELGIQV------------------HSVTRQLAQF------------------ 315
Query: 119 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 178
++ LAVG + + EA L++A DIL+ATPGRL+
Sbjct: 316 ---CNITTCLAVGGLDVKSQ----------EAA-----------LRAAPDILIATPGRLI 351
Query: 179 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238
DH++ F L + L++DE DR+L E ++ + +
Sbjct: 352 DHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEI----------------------- 388
Query: 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP 298
IR C R M+ SAT+T + LA + L +P+ + P
Sbjct: 389 -----IRMCSHHR----------QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAP 433
Query: 299 ERLESYKLICESKL--KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI 356
+ + I ++ + + ALL + ++FT + + HR+ LL G +++
Sbjct: 434 FLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQV 490
Query: 357 KEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 416
E G Q+ R + L+ F++ +I +LV++D RG+D+EGV V+N+ P IK Y+HR
Sbjct: 491 GELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHR 550
Query: 417 AGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS--IPSSLIESLR 467
GRTARAG+ GR +L+ +DE K K++++ A P+ + +P +I R
Sbjct: 551 VGRTARAGRAGRSVSLVGEDERKMLKEIVKAA---KAPVKARILPQDVILKFR 600
>sp|Q6CDN5|DBP6_YARLI ATP-dependent RNA helicase DBP6 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DBP6 PE=3 SV=1
Length = 607
Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 133/456 (29%), Positives = 208/456 (45%), Gaps = 100/456 (21%)
Query: 1 MGISSLFPVQVAV--W----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 54
+G + F VQ AV W Q+ + P + DL +++ TGSGKT +Y +PI++ L +R V
Sbjct: 206 LGYTKAFSVQKAVIPWLLAQQKLLAPDR-KPDLLVSASTGSGKTATYGIPIIEKLRDRIV 264
Query: 55 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDV 114
+RA+VVLPT+ L +Q V+DV
Sbjct: 265 PRIRAVVVLPTKPLVMQ---------------------------------------VRDV 285
Query: 115 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 174
++ LSV ++ ++ S +R LE DI+VA P
Sbjct: 286 LENLSKGSSLSV------VALRNDRSTKRERAVLETA----------------DIVVAAP 323
Query: 175 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 234
GRL++ + ++ +LVVDE DRLL + Y W +VLQ +N+ R T L
Sbjct: 324 GRLVEQVKENPEL-FSYIEFLVVDEADRLLGQDYYDW-ASVLQ----NNQQRAQAGKTNL 377
Query: 235 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGET 293
+ +R + ++ SATLT +P +A +D+H+P +F+
Sbjct: 378 TEHY-----VRN--------------MQTLIFSATLTANPEHIASMDIHNPGVFVIGSSD 418
Query: 294 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN----HF 349
Y +P+ L + KPL L LL + +VFT S E+ R+ ++
Sbjct: 419 SYSIPKSLTEIVTHVSAAEKPLMLCELLVQRDINRGVVFTKSSETAARVARMMEIMDADI 478
Query: 350 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 409
KI S R +++K F +GKI LV +D ++RG+D V+NV+NYD P+
Sbjct: 479 FHKDWKIAAVSAETSSVHRRRSMKQFIDGKIDFLVCTDLVSRGIDF-VVDNVINYDIPSG 537
Query: 410 IKTYIHRAGRTARAGQLGRCFTLL-HKDEVKRFKKL 444
+ Y+HR GRTARAG+ G +T L E K F+++
Sbjct: 538 KREYVHRVGRTARAGREGNAYTFLTGSGEAKWFREI 573
>sp|A1A4H6|DDX27_BOVIN Probable ATP-dependent RNA helicase DDX27 OS=Bos taurus GN=DDX27
PE=2 SV=1
Length = 765
Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/473 (27%), Positives = 212/473 (44%), Gaps = 114/473 (24%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLR 58
MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L R R
Sbjct: 205 MGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTR 260
Query: 59 ALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAI 118
LV++PTR+L +QV HS+ + QF S+
Sbjct: 261 VLVLVPTRELGIQV------------------HSVTKQLAQFCSI--------------- 287
Query: 119 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 178
+ LAVG + + EA L++A DIL+ATPGRL+
Sbjct: 288 ------TTCLAVGGLDVKSQ----------EAA-----------LRAAPDILIATPGRLI 320
Query: 179 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238
DH++ F L + L++DE DR+L E ++ + +
Sbjct: 321 DHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEI----------------------- 357
Query: 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP 298
IR C R M+ SAT+T + LA + L +P+ + P
Sbjct: 358 -----IRMCSHHRQ----------TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAP 402
Query: 299 ERLESYKLICESKL--KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI 356
+ + I ++ + + ALL + ++FT + + HR+ LL G +++
Sbjct: 403 FLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQV 459
Query: 357 KEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 416
E G Q+ R + L+ F++ +I +LV++D RG+D+EGV V+N+ P IK Y+HR
Sbjct: 460 GELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHR 519
Query: 417 AGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS--IPSSLIESLR 467
GRTARAG+ GR +L+ ++E K K++++ A P+ + +P +I R
Sbjct: 520 VGRTARAGRAGRSVSLVGEEERKMLKEIVKAA---KAPVKARILPQDVILKFR 569
>sp|A1CR32|RRP3_ASPCL ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=rrp3 PE=3 SV=1
Length = 473
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 129/440 (29%), Positives = 194/440 (44%), Gaps = 108/440 (24%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MG + P+Q E+I L +RDL + TGSGKT ++ALPI+Q L ++ + L
Sbjct: 71 MGYKAPTPIQA----ESIPLALQDRDLIGLAETGSGKTAAFALPILQALMDKP-QSFFGL 125
Query: 61 VVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAP 120
V+ PTR+LA Q++ + F A+
Sbjct: 126 VLAPTRELAFQISQS---------------------------------------FEALGS 146
Query: 121 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 180
+ + + VG + + L K+P I+VATPGRL+DH
Sbjct: 147 TINVRCAVIVGGMDMVSQSIALGKKPH---------------------IIVATPGRLLDH 185
Query: 181 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240
+ T+GF+L L YLV+DE DRLL + L +L++ E R TFL
Sbjct: 186 LENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKIL--PRERR-----TFL------ 232
Query: 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK-LPE 299
SAT++ L + L +PL ++ +Y+ +
Sbjct: 233 -------------------------FSATMSSKVESLQRASLSNPLRVSVSSNKYQTVST 267
Query: 300 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 359
L+SY+ I K K +YLV LL + I+FT +V T R+ LL G I +
Sbjct: 268 LLQSYRFIPH-KHKDIYLVYLLNEFVGQSAIIFTRTVHETQRISFLLRALGFGAIPLH-- 324
Query: 360 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 419
G QS R L FR +LV++D RG+D+ V+ V+N+D P KTY+HR GR
Sbjct: 325 -GQLSQSSRLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGR 383
Query: 420 TARAGQLGRCFTLLHKDEVK 439
TARAG+ G + + + +V+
Sbjct: 384 TARAGKSGVAISFVTQYDVE 403
>sp|Q09903|DRS1_SCHPO ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=drs1 PE=3 SV=1
Length = 754
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 128/453 (28%), Positives = 209/453 (46%), Gaps = 108/453 (23%)
Query: 2 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLR 58
G+S+L F V + +TI L +D+ + TGSGKT ++ +PI++ L R V R
Sbjct: 273 GLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTR 332
Query: 59 ALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAI 118
L++ PTR+LA+Q C HS+A F ++
Sbjct: 333 VLILCPTRELAMQ---------C---------HSVATKIASFTDIM-------------- 360
Query: 119 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 178
V L +G S+ + EL KRP DI++ATPGR +
Sbjct: 361 -------VCLCIGGLSLKLQEQELRKRP---------------------DIVIATPGRFI 392
Query: 179 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238
DH+ ++GFT+E++ +V+DE DR+L + + L ++Q
Sbjct: 393 DHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQA-------------------- 432
Query: 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL--FLTTGETRYK 296
C P R M+ SAT+T + L +L L+ P+ F+ +T K
Sbjct: 433 --------C---------PKSRQT-MLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAK 474
Query: 297 LPERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 355
L + E ++ + +L +P L+ L + L + I+F S H++ + FG L +
Sbjct: 475 LLTQ-EFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVI---FGLLSLN 530
Query: 356 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 415
E G Q R + L+ FR+GK L+++D +RG+D++G+ V+NY+ PA + Y+H
Sbjct: 531 ATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLH 590
Query: 416 RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 448
R GRTARAG+ GR TL + + K K + + +
Sbjct: 591 RVGRTARAGRSGRAITLAGEGDRKVLKGVFKNS 623
>sp|Q9P6N8|RRP3_SCHPO ATP-dependent rRNA helicase rrp3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp3 PE=3 SV=1
Length = 465
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/444 (28%), Positives = 193/444 (43%), Gaps = 107/444 (24%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+G + P+Q QE I L +RD+ + TGSGKT ++ALP++Q L N A+
Sbjct: 64 LGFKTPTPIQ----QEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFF-AV 118
Query: 61 VVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAP 120
V+ PTR+LA Q++ + F AI
Sbjct: 119 VLAPTRELAYQIS---------------------------------------EQFEAIGG 139
Query: 121 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 180
++G+ + VG + + L K+P +LV TPGRLMDH
Sbjct: 140 SIGVRSVVIVGGMDMVTQAVALSKKPH---------------------VLVCTPGRLMDH 178
Query: 181 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240
+ T+GF+L++L YL++DE DRLL + + +L++
Sbjct: 179 LENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKII--------------------- 217
Query: 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 300
P+ R ++ SAT+T KL + LH P+ + +++ +
Sbjct: 218 ----------------PHERRT-LLFSATMTSKVEKLQRASLHQPVRVAVS-SKFSTVDT 259
Query: 301 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 360
L L K K YLV L+ L I+F +V T RL LL G I +
Sbjct: 260 LIQRYLFFPFKHKDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPL---H 316
Query: 361 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 420
G QS R L F+ G LV++D RG+D+ V+ V+NYD P K YIHR GRT
Sbjct: 317 GQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRT 376
Query: 421 ARAGQLGRCFTLLHKDEVKRFKKL 444
ARAG+ G+ L+ + +++ F ++
Sbjct: 377 ARAGRAGKSIALVTQYDLEPFLRI 400
>sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=RRP3 PE=3 SV=2
Length = 539
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/427 (27%), Positives = 188/427 (44%), Gaps = 103/427 (24%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + E I L +D+ + TGSGKT ++A+PI+Q+L + A + ALV+ PTR
Sbjct: 143 FTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWH-AQQPYFALVLAPTR 201
Query: 67 DLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSV 126
+L Q+ KD F A+ ++GL
Sbjct: 202 ELTFQI---------------------------------------KDTFDALGSSMGLRS 222
Query: 127 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 186
VG + D+ +L+++P ++VATPGR+MDH+ T+G
Sbjct: 223 SCIVGGMDMMDQARDLMRKPH---------------------VIVATPGRIMDHLEHTKG 261
Query: 187 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 246
F+L++L YLV+DE DRLL + L +L++ +P I+R
Sbjct: 262 FSLKNLKYLVMDEADRLLDMDFGPALDKILKV---------------IP--------IKR 298
Query: 247 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL 306
+ SAT+T KL + LH+P+ + ++Y+ + L +
Sbjct: 299 TTY---------------LFSATMTNKIEKLQRASLHNPVRVAVS-SKYQTADNLVQSMM 342
Query: 307 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 366
+ K L+ LL + IVFT +V R L G + + G QS
Sbjct: 343 LVNDGYKNTILIHLLNEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPL---HGQLSQS 399
Query: 367 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 426
R +L F+ + +LV++D RG+D+ V+ V+NYD P K YIHR GRTARAG+
Sbjct: 400 QRLGSLNKFKSNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRS 459
Query: 427 GRCFTLL 433
G+ +L+
Sbjct: 460 GKSISLI 466
>sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RRP3 PE=3 SV=2
Length = 477
Score = 156 bits (394), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 118/427 (27%), Positives = 185/427 (43%), Gaps = 103/427 (24%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + E I L +D+ + TGSGKT ++A+PI+Q L A LV+ PTR
Sbjct: 85 FTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQALWE-AQAAYYGLVLAPTR 143
Query: 67 DLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSV 126
+LA Q+ K+ F A+ ++GL
Sbjct: 144 ELAYQI---------------------------------------KETFDALGSSMGLRS 164
Query: 127 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 186
VG + D+ +L+++P ILVATPGR+MDH+ T+G
Sbjct: 165 VCIVGGMDMMDQARDLMRKPH---------------------ILVATPGRIMDHLEHTKG 203
Query: 187 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 246
F+L++L YLV+DE DRLL + L +L++ + +T+L
Sbjct: 204 FSLKNLKYLVMDEADRLLDMDFGPALDKILKIIPTQR-------TTYL------------ 244
Query: 247 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL 306
SAT+T KL + LH+P+ + +Y+ + L +
Sbjct: 245 -------------------FSATMTNKIAKLQRASLHNPVRVAVS-NKYQTADNLVQSMM 284
Query: 307 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 366
+ K YL+ LL + I+FT + + R L G + + G Q+
Sbjct: 285 LVSDGYKNTYLIHLLNEFLGKSIIIFTRTCAHSQRTALLARILGFSAVPL---HGQLTQA 341
Query: 367 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 426
R +L F+ GK +L+++D RG+D+ V+ V+NYD P K YIHR GRTARAG+
Sbjct: 342 QRLGSLNKFKAGKANILIATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKS 401
Query: 427 GRCFTLL 433
G+ +L+
Sbjct: 402 GKSISLI 408
>sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=RRP3 PE=3 SV=2
Length = 475
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 117/409 (28%), Positives = 180/409 (44%), Gaps = 103/409 (25%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84
+D+ + TGSGKT ++A+PI+Q+L A R ALV+ PTR+LA Q+
Sbjct: 102 KDIIGLAQTGSGKTAAFAIPILQSLWE-AQRPYYALVLAPTRELAYQI------------ 148
Query: 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 144
K+ F A+ +G+ VG + D+ +L++
Sbjct: 149 ---------------------------KETFDALGSGMGVRSVCIVGGMDMMDQARDLMR 181
Query: 145 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 204
+P ILVATPGR+MDH+ T+GF+L+ L YLV+DE DRLL
Sbjct: 182 KPH---------------------ILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLL 220
Query: 205 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 264
+ L +L++ + +T+L
Sbjct: 221 DMDFGPALDKILKVIPTKR-------TTYL------------------------------ 243
Query: 265 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 324
SAT+T KL + LH P+ + +Y+ + L ++ K +L+ LL
Sbjct: 244 -FSATMTNKIAKLQRASLHEPVKVAVS-NKYQTADNLVQSMMLVSDGYKNTFLIHLLNEF 301
Query: 325 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 384
+ IVFT + T R L G + + G QS R +L F+ GK +L+
Sbjct: 302 MGKSIIVFTRTCAHTQRSTLLARILGFSAVPL---HGQLTQSQRLGSLNKFKSGKANILI 358
Query: 385 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 433
++D RG+D+ V+ V+NYD P K YIHR GRTARAG+ G+ +L+
Sbjct: 359 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLV 407
>sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rrp-3 PE=3 SV=1
Length = 515
Score = 155 bits (392), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 125/433 (28%), Positives = 187/433 (43%), Gaps = 106/433 (24%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+G + P+Q +++I L RD+ + TGSGKT ++ALPI+Q L ++ L AL
Sbjct: 108 LGYKNPTPIQ----EQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPA-PLFAL 162
Query: 61 VVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAP 120
V+ PTR+LA Q+ A F A+
Sbjct: 163 VLAPTRELAAQIAQA---------------------------------------FEALGS 183
Query: 121 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 180
+ L L +G + + L K+P ++VATPGRL+DH
Sbjct: 184 LISLRCALILGGMDMVTQAIALGKKPH---------------------VIVATPGRLLDH 222
Query: 181 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240
+ T+GF+L + YLV+DE DRLL + L +L+ FLP
Sbjct: 223 LEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILK---------------FLPRE--- 264
Query: 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 300
RR + SAT++ L + L PL ++ +Y
Sbjct: 265 ----RRT----------------FLFSATMSSKVESLQRASLRDPLKVSVSSNKYATVST 304
Query: 301 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 360
L+S + K YLV L + I+FT +V T R+ LL G I + +
Sbjct: 305 LKSNYVFIPHMHKDTYLVYLCNEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPL--HG 362
Query: 361 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 420
GL QS R L FR G ++LV++D RG+D+ V+ V+N+D P KTY+HR GRT
Sbjct: 363 GLS-QSARLGALNKFRAGSREILVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRT 421
Query: 421 ARAGQLGRCFTLL 433
ARAG+ G +++
Sbjct: 422 ARAGKSGHAISIV 434
>sp|A5DKW3|DRS1_PICGU ATP-dependent RNA helicase DRS1 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DRS1 PE=3 SV=2
Length = 705
Score = 155 bits (392), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 134/489 (27%), Positives = 210/489 (42%), Gaps = 123/489 (25%)
Query: 2 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLR 58
G+ +L + V A+ +I + +D+ + TGSGKT +Y +PI++ L + AV R
Sbjct: 212 GVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIERLIYKPAAVSATR 271
Query: 59 ALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAI 118
+V+ PTR+LA+QV C + + QF
Sbjct: 272 VIVLTPTRELAIQV--------C----------DVGKKLGQF------------------ 295
Query: 119 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 178
L+ GLAVG ++ + +L RP DI+VATPGRL+
Sbjct: 296 --VANLNFGLAVGGLNLRQQEQQLKSRP---------------------DIVVATPGRLI 332
Query: 179 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238
DHI + F++E+L LV+DE DR+L E +Q L +L+L
Sbjct: 333 DHIRNSPSFSIENLEVLVMDEADRMLEEGFQVELTEILELI------------------- 373
Query: 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP 298
P + M+ SAT+ L QL L P+ + P
Sbjct: 374 ------------------PKHKRQTMLFSATMNTKIQDLIQLSLDKPVRIMVN------P 409
Query: 299 ERLESYKLICE-------SKLKP---LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 348
+ + KL+ E LKP +L+ L+ + + +VF S E HRL +L
Sbjct: 410 PKQAASKLVQEFVRIRKREHLKPALLYHLLRLVDPQQQNRIVVFVSRKEMAHRLRIVL-- 467
Query: 349 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 408
G L +K+ E G Q R +++K FR + VL+ +D RG+D+ + V+N+D P
Sbjct: 468 -GLLGMKVSELHGSLTQEQRLQSVKDFRSLAVPVLICTDLAARGLDIPKIEIVINFDMPK 526
Query: 409 YIKTYIHRAGRTARAGQLGRCFTLLHKDE-----VKRFKKLLQKADNDSCPIHSIPSSLI 463
+ Y+HR GRTARAG+ GR T + + VK K L++ N ++ +
Sbjct: 527 THEIYLHRVGRTARAGREGRSITFVGESNQDRSIVKDAIKSLEEQKNGKAVSRTVDWKKV 586
Query: 464 ESLRPVYKS 472
E L + +S
Sbjct: 587 EELNSIVES 595
>sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1
Length = 467
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 127/439 (28%), Positives = 191/439 (43%), Gaps = 106/439 (24%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MG + P+Q +E+I L RDL + TGSGKT ++ALPI+Q L + + L
Sbjct: 66 MGYKAPTPIQ----RESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKP-QPFFGL 120
Query: 61 VVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAP 120
V+ PTR+LA Q++ + F ++
Sbjct: 121 VLAPTRELAYQISKS---------------------------------------FESLGA 141
Query: 121 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 180
++G+ + VG + + L K+P I+VATPGRL+DH
Sbjct: 142 SMGVRSCVIVGGMDMVSQSISLGKKPH---------------------IIVATPGRLLDH 180
Query: 181 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240
+ T+GF+L +L YLV+DE DRLL + L +L++ E R TFL
Sbjct: 181 LENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVL--PRERR-----TFL------ 227
Query: 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 300
SAT++ L + L +PL ++ ++Y+
Sbjct: 228 -------------------------FSATMSSKVESLQRASLSNPLRVSVSTSKYQTVST 262
Query: 301 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 360
L L K K LYLV LL + I+FT +V T RL LL G I +
Sbjct: 263 LLQSYLFIPQKHKDLYLVYLLNEFAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLH--- 319
Query: 361 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 420
G QS R L FR +LV++D RG+D+ V+ V+N+D P +Y+HR GRT
Sbjct: 320 GQLSQSARLGALGKFRARSRNILVATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRT 379
Query: 421 ARAGQLGRCFTLLHKDEVK 439
ARAG+ G + + + +V+
Sbjct: 380 ARAGKSGLAISFVAQYDVE 398
>sp|Q7Y183|RH10_ORYSJ DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp.
japonica GN=Os03g0669000 PE=2 SV=1
Length = 472
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 130/456 (28%), Positives = 190/456 (41%), Gaps = 104/456 (22%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-SNRAVRCLRALVVLPTRDLALQ 71
+ E I L RDL TGSGKT ++ALPI+Q L + L A V+ PTR+LA Q
Sbjct: 67 IQAEAIPHALEGRDLIGLGQTGSGKTGAFALPIIQALLKQDKPQALFACVLSPTRELAFQ 126
Query: 72 VNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVG 131
+ F A+ A+GLS + VG
Sbjct: 127 IGQQ---------------------------------------FEALGSAIGLSCTVLVG 147
Query: 132 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEH 191
+ L KRP I+V TPGRL+DH+ T+GF+L
Sbjct: 148 GVDRVQQAVSLAKRPH---------------------IVVGTPGRLLDHLTDTKGFSLNK 186
Query: 192 LCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 251
L YLV+DE D+LL +Q L +L + + TFL
Sbjct: 187 LKYLVLDEADKLLNVEFQKALDDILNVIPKERR-------TFL----------------- 222
Query: 252 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK 311
SAT+T +KL + L +P+ + ++Y + L +
Sbjct: 223 --------------FSATMTNKVSKLQRACLRNPVKVEVA-SKYSTVDTLRQEFYFVPAD 267
Query: 312 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 371
K +LV +L L ++F + EST L L + LR K SG Q R
Sbjct: 268 YKDCFLVHVLNELPGSMIMIFVRTCESTRLLALTLRN---LRFKAISISGQMSQDKRLGA 324
Query: 372 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 431
L F+ +L+ +D +RG+D++GV+ V+NYD P K Y+HR GRTARAG G +
Sbjct: 325 LNRFKTKDCNILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVS 384
Query: 432 LLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLR 467
L+++ E F K+++K P + ++ I LR
Sbjct: 385 LVNQYEAMWF-KMIEKLLGYEIPDRKVDNAEIMILR 419
>sp|A7EML8|RRP3_SCLS1 ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=rrp3 PE=3 SV=1
Length = 482
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 126/444 (28%), Positives = 193/444 (43%), Gaps = 106/444 (23%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+G + P+Q +E+I L RDL + TGSGKT ++ALPI+Q+L ++ + L L
Sbjct: 74 LGYKAPTPIQ----RESIPLALQGRDLIGLAETGSGKTAAFALPILQSLLDKP-QPLFGL 128
Query: 61 VVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAP 120
V+ PTR+LA Q++ + F A+
Sbjct: 129 VLAPTRELAYQISQS---------------------------------------FEALGS 149
Query: 121 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 180
+ + + VG + + L K+P I+VATPGRL+DH
Sbjct: 150 IIRVKCAVIVGGMDMVPQAIALGKKPH---------------------IIVATPGRLLDH 188
Query: 181 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240
+ T+GF+L L YLV+DE DRLL + L +L++ LP
Sbjct: 189 LENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKV---------------LPRE--- 230
Query: 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 300
RR + SAT++ L + L PL ++ +Y+
Sbjct: 231 ----RRT----------------YLFSATISSKVESLQRASLKDPLRVSISSNKYQTVST 270
Query: 301 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 360
L + K YL+ LL + I+FT +V T R+ LL G I +
Sbjct: 271 LIQNYIFIPLVHKDTYLIYLLNEFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLH--- 327
Query: 361 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 420
G QS R L FR G ++LV++D RG+D+ V+ V+NYD P KTYIHR GRT
Sbjct: 328 GQLSQSSRLGALNKFRAGSREILVATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRVGRT 387
Query: 421 ARAGQLGRCFTLLHKDEVKRFKKL 444
ARAG+ G + + + +V+ + ++
Sbjct: 388 ARAGKSGHAISFVTQYDVEIWMRI 411
>sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3
PE=3 SV=1
Length = 472
Score = 152 bits (384), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 125/439 (28%), Positives = 187/439 (42%), Gaps = 106/439 (24%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MG + P+Q E+I L RDL + TGSGKT ++ALPI+Q L + + L
Sbjct: 70 MGYKAPTPIQA----ESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKP-QSFFGL 124
Query: 61 VVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAP 120
++ PTR+LA Q++ + F ++
Sbjct: 125 ILAPTRELAFQISKS---------------------------------------FESLGS 145
Query: 121 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 180
+ + + VG + + L K+P I+VATPGRL+DH
Sbjct: 146 TINVRCAVIVGGMDMVSQSIALGKKPH---------------------IIVATPGRLLDH 184
Query: 181 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240
+ T+GF+L L YLV+DE DRLL + L +L++ E R TFL
Sbjct: 185 LENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVL--PRERR-----TFL------ 231
Query: 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 300
SAT++ L + L +PL ++ +Y+
Sbjct: 232 -------------------------FSATMSSKVESLQRASLSNPLRVSVSSNKYQTVST 266
Query: 301 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 360
L L K K +YLV LL + I+FT +V T R+ LL G I +
Sbjct: 267 LLQSYLFLPHKHKDIYLVYLLNEFVGQSAIIFTRTVHETQRISFLLRSLGFGAIPLH--- 323
Query: 361 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 420
G QS R L FR +LV++D RG+D+ V+ V+N+D P KTY+HR GRT
Sbjct: 324 GQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRT 383
Query: 421 ARAGQLGRCFTLLHKDEVK 439
ARAG+ G + + + +V+
Sbjct: 384 ARAGKSGVAISFVTQYDVE 402
>sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis
elegans GN=T26G10.1 PE=3 SV=1
Length = 489
Score = 152 bits (384), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 115/434 (26%), Positives = 193/434 (44%), Gaps = 107/434 (24%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN--RAVRCLRALVVLPTRDLAL 70
+ Q + L +D+ + TGSGKT ++A+P++Q+L + +A CL V+ PTR+LA
Sbjct: 70 IQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCL---VLTPTRELAF 126
Query: 71 QVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAV 130
Q+ F A+ +GL + V
Sbjct: 127 QIGQQ---------------------------------------FEALGSGIGLIAAVIV 147
Query: 131 GQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLE 190
G +A + L +RP I+VATPGRL+DH+ T+GF L+
Sbjct: 148 GGVDMAAQAMALARRPH---------------------IIVATPGRLVDHLENTKGFNLK 186
Query: 191 HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 250
L +L++DE DR+L ++ L +L++ + T+L
Sbjct: 187 ALKFLIMDEADRILNMDFEVELDKILKVIPRERR-------TYL---------------- 223
Query: 251 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 310
SAT+T+ +KL + L P ++ +RYK + L+ + + +
Sbjct: 224 ---------------FSATMTKKVSKLERASLRDPARVSVS-SRYKTVDNLKQHYIFVPN 267
Query: 311 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 370
K K YLV LL IVF ++ +T ++ +L G + + G Q R
Sbjct: 268 KYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPL---HGQMSQEKRLG 324
Query: 371 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 430
+L F+ ++LV +D RG+D+ V+ V+NYD P+ K Y+HR GRTARAG+ G
Sbjct: 325 SLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAI 384
Query: 431 TLLHKDEVKRFKKL 444
T++ + +V+ ++K+
Sbjct: 385 TVVTQYDVEAYQKI 398
>sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain
B05.10) GN=rrp3 PE=3 SV=1
Length = 486
Score = 152 bits (383), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 126/444 (28%), Positives = 192/444 (43%), Gaps = 106/444 (23%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+G + P+Q +E+I L RDL + TGSGKT ++ALPI+Q L ++ + L L
Sbjct: 78 LGYKAPTPIQ----RESIPLALQGRDLIGLAETGSGKTAAFALPILQALLDKP-QPLFGL 132
Query: 61 VVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAP 120
V+ PTR+LA Q++ F A+
Sbjct: 133 VLAPTRELAYQISQQ---------------------------------------FEALGS 153
Query: 121 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 180
+ + + VG + + L K+P I+VATPGRL+DH
Sbjct: 154 VIRVKCAVIVGGMDMVPQSIALGKKPH---------------------IIVATPGRLLDH 192
Query: 181 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240
+ T+GF+L L YLV+DE DRLL + L +L++ LP
Sbjct: 193 LENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKV---------------LPRE--- 234
Query: 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 300
RR + SAT++ L + L PL ++ +Y+
Sbjct: 235 ----RRT----------------YLFSATISSKVESLQRASLKDPLRVSISSNKYQTVST 274
Query: 301 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 360
L + K YL+ LL + I+FT +V T R+ LL G I +
Sbjct: 275 LIQNYIFIPLIHKDTYLIYLLNEFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLH--- 331
Query: 361 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 420
G QS R L FR G ++LV++D RG+D+ V+ V+NYD P KTYIHR GRT
Sbjct: 332 GQLSQSSRLGALNKFRAGSREILVATDVAARGLDIPSVDVVLNYDVPQDSKTYIHRVGRT 391
Query: 421 ARAGQLGRCFTLLHKDEVKRFKKL 444
ARAG+ G +++ + +++ F ++
Sbjct: 392 ARAGKSGHAISVVTQYDLEIFMRI 415
>sp|Q6CH58|RRP3_YARLI ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RRP3 PE=3 SV=1
Length = 480
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 129/454 (28%), Positives = 201/454 (44%), Gaps = 107/454 (23%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + ++I L RD+ + TGSGKT ++A+P++Q+L + L +V+ PTR
Sbjct: 84 FTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENP-QPLYCVVLAPTR 142
Query: 67 DLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSV 126
+LA Q++ + F A+ A+GL
Sbjct: 143 ELAYQIS---------------------------------------ETFEALGSAMGLRT 163
Query: 127 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 186
+ VG ++ + L K+P ++VATPGRL+DH+ T+G
Sbjct: 164 AVVVGGMNMMTQAVALSKKPH---------------------VIVATPGRLVDHLENTKG 202
Query: 187 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 246
F+L L +LV+DE DRLL D E F PS LK I R
Sbjct: 203 FSLRTLKFLVMDEADRLL-----------------DME--------FGPSLDKILKVIPR 237
Query: 247 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL 306
+R + SAT+T KL + L P+ + T+Y+ + L Y +
Sbjct: 238 ---QRN----------TYLFSATMTSKVEKLQRASLVDPVRVAVS-TKYQTADNLLQYMV 283
Query: 307 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 366
C K K +LV L+ I+F + T R+ LL + G I + G Q+
Sbjct: 284 FCPFKHKDTHLVYLVSENAGNSMIIFARTKSDTQRISLLLRNLGYGAIPLH---GDLSQT 340
Query: 367 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 426
R L F+ G +L+++D +RG+D+ V+ V+NYD P+ K+YIHR GRTARAG+
Sbjct: 341 ARLGALNKFKSGSRNILIATDVASRGLDIPAVDLVINYDIPSDSKSYIHRVGRTARAGRA 400
Query: 427 GRCFTLLHKDEVK---RFKKLLQKADNDSCPIHS 457
G+ L+ + +++ R + L K DS P+ S
Sbjct: 401 GKSVALVSQYDLELYLRIEGALGKK-LDSYPLES 433
>sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rrp3
PE=3 SV=1
Length = 472
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 124/439 (28%), Positives = 186/439 (42%), Gaps = 106/439 (24%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MG + P+Q E+I L RDL + TGSGKT ++ALPI+Q L + L
Sbjct: 70 MGYKAPTPIQA----ESIPLALQGRDLIGLAETGSGKTAAFALPILQALMENP-QSFFGL 124
Query: 61 VVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAP 120
++ PTR+LA Q++ + F ++
Sbjct: 125 ILAPTRELAFQISKS---------------------------------------FESLGS 145
Query: 121 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 180
+ + + VG + + L K+P I+VATPGRL+DH
Sbjct: 146 TINVRCAVIVGGMDMVSQSIALGKKPH---------------------IIVATPGRLLDH 184
Query: 181 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240
+ T+GF+L L YLV+DE DRLL + L +L++ LP
Sbjct: 185 LENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKV---------------LPRE--- 226
Query: 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 300
RR + SAT++ L + L +PL ++ +Y+
Sbjct: 227 ----RRT----------------FLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVST 266
Query: 301 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 360
L L K K +YLV LL + I+FT +V T R+ LL G I +
Sbjct: 267 LLQSYLFLPHKHKDIYLVYLLNEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLH--- 323
Query: 361 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 420
G QS R L FR +LV++D RG+D+ V+ V+N+D P KTY+HR GRT
Sbjct: 324 GQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRT 383
Query: 421 ARAGQLGRCFTLLHKDEVK 439
ARAG+ G + + + +V+
Sbjct: 384 ARAGKSGVAISFVTQYDVE 402
>sp|Q921N6|DDX27_MOUSE Probable ATP-dependent RNA helicase DDX27 OS=Mus musculus GN=Ddx27
PE=1 SV=3
Length = 760
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 128/473 (27%), Positives = 212/473 (44%), Gaps = 114/473 (24%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLR 58
MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L R R
Sbjct: 202 MGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAAVTR 257
Query: 59 ALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAI 118
LV++PTR+L +QV HS+ + QF S+
Sbjct: 258 VLVLVPTRELGIQV------------------HSVTKQLAQFCSI--------------- 284
Query: 119 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 178
+ LAVG + + EA L++A DIL+ATPGRL+
Sbjct: 285 ------TTCLAVGGLDVKSQ----------EAA-----------LRAAPDILIATPGRLI 317
Query: 179 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238
DH++ F L + L++DE DR+L E ++ + +
Sbjct: 318 DHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEI----------------------- 354
Query: 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP 298
IR C R M+ SAT+T + LA + L +P+ + P
Sbjct: 355 -----IRMCSHHRQ----------TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAP 399
Query: 299 ERLESYKLICESKL--KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI 356
+ + I ++ + + ALL + ++FT + + HR+ LL L +++
Sbjct: 400 FLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGL---LGLQV 456
Query: 357 KEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 416
E G Q+ R + L+ F++ +I +LV++D RG+D+EGV V+N+ P +K Y+HR
Sbjct: 457 GELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHR 516
Query: 417 AGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS--IPSSLIESLR 467
GRTARAG+ GR +L+ ++E K K++++ A P+ + +P +I R
Sbjct: 517 VGRTARAGRAGRSVSLVGEEERKMLKEIVKAA---KAPVKARILPQDVILKFR 566
>sp|Q4P3U9|RRP3_USTMA ATP-dependent rRNA helicase RRP3 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=RRP3 PE=3 SV=1
Length = 551
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 129/444 (29%), Positives = 188/444 (42%), Gaps = 107/444 (24%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MG P+QV E L RD+ + TGSGKT ++ +PI+Q L + + A
Sbjct: 122 MGFKHPTPIQVKAIPEA----LQARDVIGLAQTGSGKTAAFTIPILQALWDNP-KPFFAC 176
Query: 61 VVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAP 120
V+ PTR+LA Q++ QV+ A+
Sbjct: 177 VLAPTRELAYQISQ-----------------------------------QVE----ALGS 197
Query: 121 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 180
+G+ VG + + L KRP ++VATPGRL DH
Sbjct: 198 TIGVRSATIVGGMDMMSQSIALSKRPH---------------------VIVATPGRLQDH 236
Query: 181 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240
+ T+GF+L L YLV+DE DRLL + + +LQ S
Sbjct: 237 LENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQ----------------------S 274
Query: 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 300
+ RR M+ SAT+T KL + L +P+ + +T+Y
Sbjct: 275 IPRERRT----------------MLFSATMTTKVAKLQRASLKNPVRVEV-DTKYTTVST 317
Query: 301 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 360
L+ + + K YLV L IVFT +V + RL LL G I +
Sbjct: 318 LKQHYMFMPFAHKDTYLVHLANEQAGHSIIVFTRTVHDSQRLSILLRLLGFPAIPLH--- 374
Query: 361 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 420
G Q R L F+ G +LV++D +RG+D+ V+ VVNYD P K YIHR GRT
Sbjct: 375 GQLSQQARLGALNKFKTGGRSILVATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRT 434
Query: 421 ARAGQLGRCFTLLHKDEVKRFKKL 444
ARAG+ GR TL+ + +V+ +++
Sbjct: 435 ARAGRSGRSVTLVTQYDVELLQRI 458
>sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=DRS1 PE=3 SV=1
Length = 808
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 127/466 (27%), Positives = 197/466 (42%), Gaps = 105/466 (22%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALV 61
F + I L RD+ ++ TGSGKT ++ +PI++ L R C R LV
Sbjct: 242 FTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCYRDRGKGGAAC-RVLV 300
Query: 62 VLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPA 121
+ PTR+LA+Q C+ K A+A
Sbjct: 301 LCPTRELAVQ-----CEAVGK----------------------------------ALAEK 321
Query: 122 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 181
GL V A+ L G+ + + L++ DIL+ATPGRL+DH+
Sbjct: 322 GGLDVRFAL-----------------LVGGLSLNAQ--AHTLRTLPDILIATPGRLIDHL 362
Query: 182 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 241
T FTL L LV+DE DR+L + L +
Sbjct: 363 TNTPSFTLSALDVLVIDEADRMLEAGFTDELEEI-------------------------- 396
Query: 242 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 301
I+ C P R M+ SAT+T ++L +L L P+ + R
Sbjct: 397 --IKAC---------PRSRQT-MLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTARGLT 444
Query: 302 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 361
+ + I + L+AL + EKCI+F S H++ + FG +K E G
Sbjct: 445 QEFVRIRSDDSRSPSLLALCKRTIREKCIIFFRSKALAHQMRIVFGLFG---LKAAELHG 501
Query: 362 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 421
Q R + L F+ G + L+++D +RG+D++GV V+NYD P + Y HR GRTA
Sbjct: 502 NLTQEQRLQALNDFKAGTVDYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTA 561
Query: 422 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLR 467
RAG+ GR +L+ + + K K +++A+ D IPS + +++
Sbjct: 562 RAGRKGRSVSLVGEADRKMLKAAIKQAEADQVRHRIIPSEAVTAMK 607
>sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=DRS1 PE=3 SV=1
Length = 808
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 127/466 (27%), Positives = 197/466 (42%), Gaps = 105/466 (22%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALV 61
F + I L RD+ ++ TGSGKT ++ +PI++ L R C R LV
Sbjct: 242 FTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCYRDRGKGGAAC-RVLV 300
Query: 62 VLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPA 121
+ PTR+LA+Q C+ K A+A
Sbjct: 301 LCPTRELAVQ-----CEAVGK----------------------------------ALAEK 321
Query: 122 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 181
GL V A+ L G+ + + L++ DIL+ATPGRL+DH+
Sbjct: 322 GGLDVRFAL-----------------LVGGLSLNAQ--AHTLRTLPDILIATPGRLIDHL 362
Query: 182 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 241
T FTL L LV+DE DR+L + L +
Sbjct: 363 TNTPSFTLSALDVLVIDEADRMLEAGFTDELEEI-------------------------- 396
Query: 242 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 301
I+ C P R M+ SAT+T ++L +L L P+ + R
Sbjct: 397 --IKAC---------PRSRQT-MLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTARGLT 444
Query: 302 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 361
+ + I + L+AL + EKCI+F S H++ + FG +K E G
Sbjct: 445 QEFVRIRSDDSRSPSLLALCKRTIREKCIIFFRSKALAHQMRIVFGLFG---LKAAELHG 501
Query: 362 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 421
Q R + L F+ G + L+++D +RG+D++GV V+NYD P + Y HR GRTA
Sbjct: 502 NLTQEQRLQALNDFKAGTVDYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTA 561
Query: 422 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLR 467
RAG+ GR +L+ + + K K +++A+ D IPS + +++
Sbjct: 562 RAGRKGRSVSLVGEADRKMLKAAIKQAEADQVRHRIIPSEAVTAMK 607
>sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=rrp3 PE=3 SV=1
Length = 472
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 122/438 (27%), Positives = 185/438 (42%), Gaps = 102/438 (23%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
+ A+ E I L RDL + TGSGKT ++ALPI+Q L ++ LV+ PTR
Sbjct: 72 YKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFF-GLVLAPTR 130
Query: 67 DLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSV 126
+LA Q++ A F + + +
Sbjct: 131 ELAYQISQA---------------------------------------FEGLGSTISVRS 151
Query: 127 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 186
+ VG + + L K+P I+VATPGRL+DH+ T+G
Sbjct: 152 TVLVGGMDMVSQSIALGKKPH---------------------IIVATPGRLLDHLENTKG 190
Query: 187 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 246
F+L +L YLV+DE DRLL + L +L++ LP RR
Sbjct: 191 FSLRNLKYLVMDEADRLLDMDFGPILDKILKV---------------LPRE-------RR 228
Query: 247 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL 306
+ SAT++ L + L +PL + ++++ L+ +
Sbjct: 229 T----------------YLFSATMSSKVESLQRASLQNPLRVAVSSSKFQTVSTLQQSYI 272
Query: 307 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 366
K K LYLV LL + CI+F +V T RL L G I + G QS
Sbjct: 273 FIPHKHKDLYLVYLLNEFVGQSCIIFCRTVHETQRLSFFLRLLGFGAIPLH---GQLSQS 329
Query: 367 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 426
R L FR +LV++D RG+D+ V+ V+N+D P KT+IHR GRTARAG+
Sbjct: 330 ARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKS 389
Query: 427 GRCFTLLHKDEVKRFKKL 444
G + + +V+ + ++
Sbjct: 390 GVAISFATQYDVEAWLRI 407
>sp|Q5ACK7|DRS1_CANAL ATP-dependent RNA helicase DRS1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DRS1 PE=3 SV=1
Length = 613
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 115/434 (26%), Positives = 188/434 (43%), Gaps = 105/434 (24%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P+Q A +I L +D+ + TGSGKT +Y +PI++ L + + +++ PTR+
Sbjct: 155 PIQSA----SIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVIILTPTRE 210
Query: 68 LALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVG 127
LALQV FG H + L++G
Sbjct: 211 LALQVYE----------FGKKLSHHVN----------------------------NLNIG 232
Query: 128 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 187
LAVG ++ + +L RP DI++ATPGRL+DHI + F
Sbjct: 233 LAVGGLNLRQQEEQLKTRP---------------------DIVIATPGRLIDHIRNSPSF 271
Query: 188 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 247
+++ + LV+DE DR+L E +Q L +L L
Sbjct: 272 SVQDIQVLVIDEADRMLEEGFQDELTEILSLI---------------------------- 303
Query: 248 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY-KL 306
P + ++ SAT+ L QL L P+ + + + L+ + ++
Sbjct: 304 ---------PKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRI 354
Query: 307 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 366
+LKP L LL+ + + +VF + E+ HRL +L G +K+ E G Q
Sbjct: 355 RKRDQLKPALLYQLLKGVSS-RVVVFVARKETAHRLRIVLGLLG---LKVSELHGALTQE 410
Query: 367 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 426
R + +K F+ ++ VL+ +D RG+D+ + V+NYD P + Y+HR GRTARAG+
Sbjct: 411 QRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRD 470
Query: 427 GRCFTLLHKDEVKR 440
G T + + +R
Sbjct: 471 GTSITFVGESSQER 484
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,672,152
Number of Sequences: 539616
Number of extensions: 6785273
Number of successful extensions: 23479
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 18199
Number of HSP's gapped (non-prelim): 3741
length of query: 475
length of database: 191,569,459
effective HSP length: 121
effective length of query: 354
effective length of database: 126,275,923
effective search space: 44701676742
effective search space used: 44701676742
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)