Query 011884
Match_columns 475
No_of_seqs 126 out of 1342
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:17:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 9.6E-54 2.1E-58 393.6 28.6 358 2-467 80-437 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 2.9E-53 6.4E-58 415.5 30.2 358 2-467 110-476 (519)
3 PTZ00110 helicase; Provisional 100.0 1.3E-50 2.9E-55 417.3 32.0 356 1-465 148-510 (545)
4 PRK04837 ATP-dependent RNA hel 100.0 1.1E-50 2.5E-55 409.1 30.1 354 1-460 26-385 (423)
5 KOG0350 DEAD-box ATP-dependent 100.0 1.1E-50 2.3E-55 384.1 26.4 406 1-470 155-575 (620)
6 PRK04537 ATP-dependent RNA hel 100.0 9.8E-50 2.1E-54 412.1 31.8 362 1-467 27-394 (572)
7 PRK11776 ATP-dependent RNA hel 100.0 7.8E-50 1.7E-54 407.3 29.8 341 1-450 22-363 (460)
8 PLN00206 DEAD-box ATP-dependen 100.0 1.5E-49 3.2E-54 408.5 31.5 355 1-465 139-501 (518)
9 COG0513 SrmB Superfamily II DN 100.0 1E-49 2.3E-54 406.8 29.4 345 1-451 47-396 (513)
10 KOG0338 ATP-dependent RNA heli 100.0 9.4E-50 2E-54 378.2 26.7 360 1-466 199-565 (691)
11 PRK10590 ATP-dependent RNA hel 100.0 1.6E-49 3.5E-54 403.3 30.3 344 1-451 19-367 (456)
12 PRK01297 ATP-dependent RNA hel 100.0 1.4E-48 3E-53 399.2 34.0 347 1-451 105-457 (475)
13 PRK11192 ATP-dependent RNA hel 100.0 5.1E-49 1.1E-53 398.9 30.6 342 1-449 19-365 (434)
14 PRK11634 ATP-dependent RNA hel 100.0 9.5E-49 2.1E-53 406.9 31.2 342 1-450 24-366 (629)
15 KOG0328 Predicted ATP-dependen 100.0 2.6E-49 5.6E-54 349.7 22.0 342 1-450 45-387 (400)
16 KOG0345 ATP-dependent RNA heli 100.0 2.1E-48 4.5E-53 366.3 26.7 345 1-448 24-375 (567)
17 PTZ00424 helicase 45; Provisio 100.0 8.5E-48 1.8E-52 387.1 30.6 343 1-451 46-389 (401)
18 KOG0342 ATP-dependent RNA heli 100.0 1.1E-47 2.4E-52 363.8 25.4 340 1-445 100-446 (543)
19 KOG0333 U5 snRNP-like RNA heli 100.0 2E-47 4.3E-52 363.7 23.4 361 2-448 264-636 (673)
20 KOG0343 RNA Helicase [RNA proc 100.0 1.8E-46 3.9E-51 358.9 26.9 342 2-447 88-434 (758)
21 KOG0340 ATP-dependent RNA heli 100.0 2.8E-46 6.1E-51 340.5 24.2 347 1-453 25-378 (442)
22 KOG0335 ATP-dependent RNA heli 100.0 3.4E-46 7.4E-51 359.6 24.6 361 1-466 92-471 (482)
23 KOG0348 ATP-dependent RNA heli 100.0 6.5E-46 1.4E-50 354.0 26.0 360 1-448 155-566 (708)
24 KOG0326 ATP-dependent RNA heli 100.0 7.2E-47 1.6E-51 339.6 18.1 344 1-453 103-446 (459)
25 KOG0336 ATP-dependent RNA heli 100.0 6.1E-46 1.3E-50 343.6 19.3 355 1-465 238-598 (629)
26 TIGR00614 recQ_fam ATP-depende 100.0 8E-44 1.7E-48 362.7 26.4 333 1-449 7-346 (470)
27 TIGR03817 DECH_helic helicase/ 100.0 1.1E-43 2.3E-48 376.1 27.0 345 1-448 32-400 (742)
28 KOG0346 RNA helicase [RNA proc 100.0 1.1E-43 2.3E-48 331.7 22.7 366 1-469 37-450 (569)
29 KOG0339 ATP-dependent RNA heli 100.0 1.7E-42 3.7E-47 328.5 24.1 353 3-465 243-601 (731)
30 KOG0347 RNA helicase [RNA proc 100.0 3.2E-43 7E-48 336.6 19.0 367 1-468 199-603 (731)
31 PLN03137 ATP-dependent DNA hel 100.0 3.8E-42 8.3E-47 362.3 27.9 335 1-449 456-800 (1195)
32 PRK11057 ATP-dependent DNA hel 100.0 7E-42 1.5E-46 357.3 28.5 329 1-447 21-354 (607)
33 PRK13767 ATP-dependent helicas 100.0 1.9E-41 4.2E-46 365.9 31.1 368 2-460 29-423 (876)
34 TIGR01389 recQ ATP-dependent D 100.0 3.2E-41 6.9E-46 353.4 27.8 330 1-447 9-342 (591)
35 KOG0332 ATP-dependent RNA heli 100.0 1.8E-41 3.8E-46 310.9 19.7 341 1-449 108-457 (477)
36 PRK02362 ski2-like helicase; P 100.0 5.9E-40 1.3E-44 351.2 26.8 324 1-436 19-397 (737)
37 KOG0341 DEAD-box protein abstr 100.0 2E-40 4.3E-45 305.1 18.5 348 1-450 188-546 (610)
38 COG1201 Lhr Lhr-like helicases 100.0 1.4E-39 3.1E-44 336.5 26.2 360 3-466 20-393 (814)
39 KOG4284 DEAD box protein [Tran 100.0 4.2E-40 9.2E-45 320.1 20.4 353 2-462 44-410 (980)
40 KOG0327 Translation initiation 100.0 7.7E-40 1.7E-44 302.7 21.0 340 1-449 44-383 (397)
41 TIGR00580 mfd transcription-re 100.0 5.7E-39 1.2E-43 343.2 28.3 328 1-447 448-787 (926)
42 KOG0334 RNA helicase [RNA proc 100.0 9.3E-40 2E-44 336.1 21.2 350 1-456 383-740 (997)
43 PRK00254 ski2-like helicase; P 100.0 4.7E-39 1E-43 343.4 26.6 358 1-472 19-425 (720)
44 KOG0344 ATP-dependent RNA heli 100.0 2.4E-39 5.3E-44 314.1 21.9 352 2-454 155-513 (593)
45 PRK10917 ATP-dependent DNA hel 100.0 7.7E-38 1.7E-42 330.3 31.0 328 1-446 258-603 (681)
46 TIGR00643 recG ATP-dependent D 100.0 9.2E-38 2E-42 327.7 30.2 318 1-433 232-563 (630)
47 KOG0337 ATP-dependent RNA heli 100.0 4E-39 8.7E-44 299.7 16.7 342 2-450 40-382 (529)
48 PRK09751 putative ATP-dependen 100.0 2E-37 4.4E-42 339.6 28.7 310 29-424 1-372 (1490)
49 COG0514 RecQ Superfamily II DN 100.0 5.1E-37 1.1E-41 306.9 25.8 334 1-450 13-351 (590)
50 PRK10689 transcription-repair 100.0 6.5E-37 1.4E-41 334.1 28.8 317 1-435 597-918 (1147)
51 PRK01172 ski2-like helicase; P 100.0 1E-36 2.2E-41 324.2 26.0 331 2-445 20-388 (674)
52 COG1111 MPH1 ERCC4-like helica 100.0 1.3E-35 2.8E-40 284.1 28.9 321 5-436 15-481 (542)
53 TIGR02621 cas3_GSU0051 CRISPR- 100.0 9.8E-36 2.1E-40 309.8 24.4 344 1-433 12-388 (844)
54 COG1204 Superfamily II helicas 100.0 2.1E-35 4.6E-40 309.6 20.5 335 2-443 28-416 (766)
55 KOG0952 DNA/RNA helicase MER3/ 100.0 2.7E-35 5.9E-40 300.8 20.2 362 1-470 106-522 (1230)
56 PHA02558 uvsW UvsW helicase; P 100.0 2E-34 4.4E-39 295.2 25.4 302 4-428 113-444 (501)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 9.2E-34 2E-38 300.3 24.0 307 16-440 9-340 (819)
58 PHA02653 RNA helicase NPH-II; 100.0 6.6E-34 1.4E-38 294.6 21.7 326 5-444 160-522 (675)
59 TIGR01587 cas3_core CRISPR-ass 100.0 2.6E-33 5.6E-38 277.4 23.7 313 26-435 1-335 (358)
60 COG1202 Superfamily II helicas 100.0 5.5E-34 1.2E-38 274.8 16.9 324 1-434 212-551 (830)
61 PRK11664 ATP-dependent RNA hel 100.0 1.5E-33 3.2E-38 299.5 21.5 307 15-439 11-342 (812)
62 KOG0354 DEAD-box like helicase 100.0 8.9E-33 1.9E-37 279.5 24.8 131 312-444 395-537 (746)
63 COG1205 Distinct helicase fami 100.0 3.5E-33 7.5E-38 297.0 22.2 334 2-434 67-420 (851)
64 COG1200 RecG RecG-like helicas 100.0 2.2E-32 4.7E-37 272.8 22.9 340 2-463 260-617 (677)
65 TIGR00603 rad25 DNA repair hel 100.0 4.1E-32 8.8E-37 280.1 24.6 313 5-441 255-612 (732)
66 PRK09401 reverse gyrase; Revie 100.0 7.4E-32 1.6E-36 295.2 25.7 326 1-422 77-430 (1176)
67 PRK13766 Hef nuclease; Provisi 100.0 3.7E-31 8E-36 286.7 30.0 121 311-435 346-478 (773)
68 KOG0329 ATP-dependent RNA heli 100.0 1.4E-32 3.1E-37 240.3 14.3 307 2-449 61-369 (387)
69 PRK12898 secA preprotein trans 100.0 3.9E-31 8.5E-36 269.8 23.6 356 2-438 101-588 (656)
70 TIGR03714 secA2 accessory Sec 100.0 1.5E-30 3.3E-35 268.5 27.9 370 6-449 69-557 (762)
71 PRK14701 reverse gyrase; Provi 100.0 6.8E-32 1.5E-36 301.3 19.4 353 1-447 76-467 (1638)
72 PRK09200 preprotein translocas 100.0 1.9E-30 4.1E-35 270.3 24.2 357 2-438 76-543 (790)
73 TIGR03158 cas3_cyano CRISPR-as 100.0 4.9E-30 1.1E-34 251.7 25.5 321 9-421 1-357 (357)
74 TIGR00963 secA preprotein tran 100.0 8.1E-30 1.8E-34 261.5 26.7 365 5-449 56-537 (745)
75 KOG0351 ATP-dependent DNA heli 100.0 8.8E-31 1.9E-35 276.7 20.1 333 1-448 260-604 (941)
76 PRK09694 helicase Cas3; Provis 100.0 2.6E-29 5.6E-34 266.5 31.2 385 5-473 286-731 (878)
77 COG1197 Mfd Transcription-repa 100.0 1.1E-29 2.4E-34 266.8 27.1 317 1-435 591-912 (1139)
78 COG1061 SSL2 DNA or RNA helica 100.0 9.5E-30 2.1E-34 255.7 21.7 317 5-423 36-376 (442)
79 TIGR01054 rgy reverse gyrase. 100.0 4.3E-29 9.3E-34 274.0 25.5 307 2-408 76-409 (1171)
80 KOG0951 RNA helicase BRR2, DEA 100.0 2.1E-29 4.4E-34 261.0 21.0 363 1-470 305-729 (1674)
81 KOG0352 ATP-dependent DNA heli 100.0 2.6E-29 5.6E-34 234.6 18.7 333 1-446 15-372 (641)
82 PRK05580 primosome assembly pr 100.0 2E-28 4.4E-33 257.8 25.6 325 5-438 144-551 (679)
83 PRK04914 ATP-dependent helicas 100.0 6.2E-28 1.3E-32 257.5 26.0 121 312-434 479-601 (956)
84 PRK11448 hsdR type I restricti 100.0 1.6E-27 3.5E-32 259.8 24.6 98 325-424 697-801 (1123)
85 PRK11131 ATP-dependent RNA hel 100.0 1.4E-27 3E-32 258.2 22.0 224 166-440 163-415 (1294)
86 KOG0349 Putative DEAD-box RNA 100.0 2.1E-27 4.6E-32 222.2 19.9 302 57-449 287-628 (725)
87 TIGR01407 dinG_rel DnaQ family 100.0 7.9E-27 1.7E-31 253.0 27.0 438 2-449 243-829 (850)
88 TIGR00595 priA primosomal prot 100.0 1.9E-27 4.1E-32 241.9 20.3 298 28-435 1-380 (505)
89 PRK13104 secA preprotein trans 100.0 1.8E-26 4E-31 240.0 27.5 378 5-464 82-620 (896)
90 COG4098 comFA Superfamily II D 100.0 5.9E-27 1.3E-31 213.7 20.7 307 5-433 97-413 (441)
91 TIGR01967 DEAH_box_HrpA ATP-de 99.9 7.6E-27 1.6E-31 253.5 22.4 309 15-440 73-408 (1283)
92 PRK12904 preprotein translocas 99.9 1E-25 2.2E-30 234.3 22.5 365 5-449 81-593 (830)
93 COG0556 UvrB Helicase subunit 99.9 4E-25 8.6E-30 212.7 21.3 163 261-435 387-556 (663)
94 COG4581 Superfamily II RNA hel 99.9 5.1E-26 1.1E-30 239.3 16.6 332 1-448 116-551 (1041)
95 KOG0353 ATP-dependent DNA heli 99.9 1.2E-25 2.6E-30 207.3 15.5 321 3-443 92-474 (695)
96 KOG0947 Cytoplasmic exosomal R 99.9 1.9E-25 4E-30 226.8 17.9 327 1-447 294-736 (1248)
97 PRK12906 secA preprotein trans 99.9 3.8E-25 8.3E-30 229.2 19.4 135 310-449 422-573 (796)
98 PRK13107 preprotein translocas 99.9 3.3E-24 7.2E-29 222.6 24.5 378 5-464 82-624 (908)
99 PRK07246 bifunctional ATP-depe 99.9 2.9E-24 6.3E-29 229.9 24.2 426 2-448 243-797 (820)
100 PRK08074 bifunctional ATP-depe 99.9 2.8E-24 6.1E-29 234.1 23.3 197 5-205 257-469 (928)
101 KOG0948 Nuclear exosomal RNA h 99.9 2.7E-25 5.9E-30 220.4 13.1 340 5-463 129-567 (1041)
102 KOG0950 DNA polymerase theta/e 99.9 6.1E-25 1.3E-29 224.5 15.8 346 2-449 220-624 (1008)
103 PLN03142 Probable chromatin-re 99.9 7.4E-24 1.6E-28 227.2 21.1 118 312-432 471-593 (1033)
104 COG1203 CRISPR-associated heli 99.9 5.6E-24 1.2E-28 226.4 18.4 341 6-439 196-553 (733)
105 PRK11747 dinG ATP-dependent DN 99.9 3.8E-23 8.3E-28 218.6 24.6 200 2-205 23-260 (697)
106 PRK12899 secA preprotein trans 99.9 4E-23 8.6E-28 214.9 23.6 133 1-204 85-228 (970)
107 COG4096 HsdR Type I site-speci 99.9 1.9E-22 4.1E-27 204.4 25.2 342 5-423 165-525 (875)
108 TIGR03117 cas_csf4 CRISPR-asso 99.9 6.4E-23 1.4E-27 210.3 21.3 192 10-205 2-220 (636)
109 cd00268 DEADc DEAD-box helicas 99.9 2.2E-23 4.7E-28 189.6 16.1 184 1-287 17-201 (203)
110 TIGR00631 uvrb excinuclease AB 99.9 4.4E-22 9.4E-27 207.5 23.6 126 311-440 425-557 (655)
111 KOG0949 Predicted helicase, DE 99.9 8.8E-23 1.9E-27 207.8 17.3 110 355-465 964-1075(1330)
112 COG1643 HrpA HrpA-like helicas 99.9 3.9E-22 8.6E-27 208.9 21.7 310 15-439 56-390 (845)
113 TIGR00348 hsdR type I site-spe 99.9 2.1E-21 4.6E-26 204.7 25.9 122 326-448 514-661 (667)
114 PF00270 DEAD: DEAD/DEAH box h 99.9 2.3E-22 5.1E-27 177.2 15.4 149 7-221 1-149 (169)
115 TIGR00604 rad3 DNA repair heli 99.9 8.8E-22 1.9E-26 210.0 20.7 200 1-205 6-234 (705)
116 COG1198 PriA Primosomal protei 99.9 8E-22 1.7E-26 203.7 19.6 333 4-445 197-612 (730)
117 COG1110 Reverse gyrase [DNA re 99.9 2E-21 4.3E-26 199.9 21.7 318 2-407 80-416 (1187)
118 COG1199 DinG Rad3-related DNA 99.9 6.5E-21 1.4E-25 203.1 24.0 199 4-205 14-234 (654)
119 KOG0922 DEAH-box RNA helicase 99.9 1.7E-21 3.8E-26 193.2 17.7 310 16-440 58-394 (674)
120 KOG0385 Chromatin remodeling c 99.9 6.7E-20 1.4E-24 183.2 24.2 372 5-448 167-613 (971)
121 PRK05298 excinuclease ABC subu 99.8 2E-19 4.3E-24 189.1 25.4 135 312-450 430-580 (652)
122 KOG1123 RNA polymerase II tran 99.8 6.4E-20 1.4E-24 175.2 18.1 309 4-443 301-660 (776)
123 PRK12900 secA preprotein trans 99.8 5.9E-20 1.3E-24 191.9 18.4 150 309-465 579-745 (1025)
124 KOG0923 mRNA splicing factor A 99.8 1.3E-19 2.8E-24 178.4 17.4 305 17-438 273-608 (902)
125 PRK12326 preprotein translocas 99.8 1.1E-18 2.4E-23 177.6 23.3 352 5-437 78-548 (764)
126 PRK13103 secA preprotein trans 99.8 8.2E-19 1.8E-23 182.8 18.8 147 310-464 431-624 (913)
127 KOG0384 Chromodomain-helicase 99.8 9.7E-20 2.1E-24 190.2 10.7 372 4-437 369-812 (1373)
128 KOG0926 DEAH-box RNA helicase 99.8 6.5E-19 1.4E-23 176.6 15.3 321 16-435 263-703 (1172)
129 KOG0924 mRNA splicing factor A 99.8 2.6E-18 5.6E-23 169.6 17.4 301 17-436 364-697 (1042)
130 COG4889 Predicted helicase [Ge 99.8 6.5E-19 1.4E-23 177.9 11.2 97 328-424 462-573 (1518)
131 KOG0920 ATP-dependent RNA heli 99.8 4.6E-18 1E-22 177.9 17.4 314 17-439 181-547 (924)
132 CHL00122 secA preprotein trans 99.8 3.3E-17 7.1E-22 170.2 19.9 130 2-204 74-209 (870)
133 KOG0390 DNA repair protein, SN 99.8 8.6E-17 1.9E-21 165.7 21.7 80 353-432 619-701 (776)
134 PRK12903 secA preprotein trans 99.7 5.5E-17 1.2E-21 167.6 17.4 120 310-435 408-538 (925)
135 KOG0387 Transcription-coupled 99.7 3.1E-17 6.6E-22 165.1 14.8 119 312-432 530-652 (923)
136 PRK12902 secA preprotein trans 99.7 1.3E-15 2.8E-20 158.2 23.4 128 5-204 85-218 (939)
137 cd00079 HELICc Helicase superf 99.7 7.7E-17 1.7E-21 135.5 12.0 118 312-432 12-131 (131)
138 smart00487 DEXDc DEAD-like hel 99.7 4.1E-16 8.8E-21 140.6 15.9 185 1-289 4-189 (201)
139 KOG0392 SNF2 family DNA-depend 99.7 1.7E-15 3.8E-20 158.3 20.5 126 310-435 1308-1453(1549)
140 KOG0389 SNF2 family DNA-depend 99.7 2.5E-16 5.4E-21 158.4 12.7 123 313-438 762-890 (941)
141 PF06862 DUF1253: Protein of u 99.7 1.2E-14 2.7E-19 142.4 22.7 261 166-445 131-424 (442)
142 KOG0951 RNA helicase BRR2, DEA 99.7 1.5E-15 3.3E-20 159.0 16.0 342 5-471 1143-1522(1674)
143 PF00271 Helicase_C: Helicase 99.7 3.1E-16 6.8E-21 119.0 8.1 77 345-424 2-78 (78)
144 KOG0925 mRNA splicing factor A 99.6 1E-15 2.2E-20 146.3 12.3 297 17-436 55-387 (699)
145 KOG1000 Chromatin remodeling p 99.6 1.1E-14 2.4E-19 139.5 19.2 122 309-433 469-598 (689)
146 PF04851 ResIII: Type III rest 99.6 3E-16 6.5E-21 140.0 6.3 65 5-76 3-70 (184)
147 KOG0953 Mitochondrial RNA heli 99.6 5.8E-15 1.3E-19 143.5 14.8 279 27-446 194-486 (700)
148 smart00489 DEXDc3 DEAD-like he 99.6 1.4E-15 3E-20 144.7 9.1 201 1-206 5-251 (289)
149 smart00488 DEXDc2 DEAD-like he 99.6 1.4E-15 3E-20 144.7 9.1 201 1-206 5-251 (289)
150 PRK12901 secA preprotein trans 99.6 4.4E-14 9.5E-19 148.4 18.1 133 312-449 612-761 (1112)
151 KOG4150 Predicted ATP-dependen 99.6 2.5E-14 5.4E-19 139.2 13.8 111 325-435 524-639 (1034)
152 cd00046 DEXDc DEAD-like helica 99.6 7.2E-14 1.6E-18 118.4 15.1 121 25-209 1-121 (144)
153 smart00490 HELICc helicase sup 99.5 5.9E-14 1.3E-18 107.3 8.8 81 341-424 2-82 (82)
154 PRK14873 primosome assembly pr 99.5 1.7E-12 3.7E-17 135.6 19.6 107 27-203 163-269 (665)
155 KOG2340 Uncharacterized conser 99.5 4.9E-13 1.1E-17 129.4 13.7 260 166-444 385-676 (698)
156 TIGR02562 cas3_yersinia CRISPR 99.5 3.5E-12 7.6E-17 134.9 20.3 110 329-441 759-899 (1110)
157 KOG0386 Chromatin remodeling c 99.4 1E-12 2.2E-17 135.8 13.9 122 311-435 709-835 (1157)
158 KOG1133 Helicase of the DEAD s 99.4 4.4E-11 9.5E-16 119.7 22.6 122 325-449 628-797 (821)
159 KOG4439 RNA polymerase II tran 99.3 7.9E-11 1.7E-15 117.9 18.4 118 312-432 729-852 (901)
160 KOG0391 SNF2 family DNA-depend 99.3 5.7E-11 1.2E-15 124.2 17.9 117 313-432 1261-1381(1958)
161 KOG0388 SNF2 family DNA-depend 99.3 7.3E-11 1.6E-15 118.0 18.0 118 312-432 1028-1148(1185)
162 COG0653 SecA Preprotein transl 99.3 3E-11 6.5E-16 125.7 14.3 121 310-435 411-544 (822)
163 PF02399 Herpes_ori_bp: Origin 99.3 3.8E-10 8.2E-15 116.9 21.8 111 316-436 271-388 (824)
164 KOG1132 Helicase of the DEAD s 99.3 2.8E-10 6.2E-15 117.1 20.6 194 5-204 21-260 (945)
165 KOG1131 RNA polymerase II tran 99.3 1.5E-10 3.2E-15 112.3 16.5 198 1-204 12-238 (755)
166 COG0553 HepA Superfamily II DN 99.2 1.4E-10 3.1E-15 128.5 15.3 118 312-432 692-816 (866)
167 KOG1002 Nucleotide excision re 99.2 1.4E-09 3E-14 105.0 19.3 120 325-447 637-761 (791)
168 KOG1015 Transcription regulato 99.1 1.8E-09 3.8E-14 111.4 17.6 120 313-432 1127-1271(1567)
169 COG0610 Type I site-specific r 99.1 2.4E-09 5.1E-14 117.2 19.4 84 368-452 580-667 (962)
170 PF07652 Flavi_DEAD: Flaviviru 99.1 5.7E-10 1.2E-14 92.0 10.8 108 23-206 3-110 (148)
171 PF00176 SNF2_N: SNF2 family N 99.0 3.6E-10 7.8E-15 109.0 5.6 130 9-203 1-146 (299)
172 PF13307 Helicase_C_2: Helicas 98.9 2.7E-09 5.8E-14 93.3 8.5 109 324-435 7-149 (167)
173 PF07517 SecA_DEAD: SecA DEAD- 98.7 5.9E-08 1.3E-12 90.1 10.4 128 5-204 77-210 (266)
174 KOG0921 Dosage compensation co 98.7 2E-07 4.2E-12 96.3 12.9 116 325-441 642-779 (1282)
175 PRK15483 type III restriction- 98.7 1.4E-07 2.9E-12 101.0 11.0 73 379-451 501-583 (986)
176 PF13086 AAA_11: AAA domain; P 98.6 8.8E-08 1.9E-12 88.7 7.7 69 5-78 1-75 (236)
177 KOG1016 Predicted DNA helicase 98.5 8.5E-06 1.8E-10 83.2 19.7 107 326-432 719-843 (1387)
178 KOG0952 DNA/RNA helicase MER3/ 98.5 5.8E-08 1.2E-12 101.9 2.8 139 6-213 928-1067(1230)
179 smart00492 HELICc3 helicase su 98.4 2E-06 4.4E-11 72.5 9.3 98 338-435 3-137 (141)
180 smart00491 HELICc2 helicase su 98.4 1.7E-06 3.7E-11 73.0 8.6 98 338-435 3-138 (142)
181 COG3587 Restriction endonuclea 98.3 6E-05 1.3E-09 78.4 18.2 74 379-452 483-569 (985)
182 PF02562 PhoH: PhoH-like prote 98.2 4.2E-06 9E-11 74.8 7.7 60 3-68 2-61 (205)
183 KOG1802 RNA helicase nonsense 98.2 3.4E-06 7.5E-11 84.8 7.5 73 1-80 406-478 (935)
184 PF13245 AAA_19: Part of AAA d 98.2 5.3E-06 1.2E-10 61.8 6.7 53 24-76 10-62 (76)
185 KOG1803 DNA helicase [Replicat 98.1 6.1E-06 1.3E-10 82.7 7.6 65 5-76 185-249 (649)
186 PF13604 AAA_30: AAA domain; P 98.1 6.2E-06 1.4E-10 74.1 5.7 61 5-72 1-62 (196)
187 PF12340 DUF3638: Protein of u 97.9 6.3E-05 1.4E-09 67.8 9.6 67 5-76 23-89 (229)
188 PF09848 DUF2075: Uncharacteri 97.9 3.9E-05 8.5E-10 75.7 8.3 48 26-75 3-50 (352)
189 TIGR00596 rad1 DNA repair prot 97.9 6.2E-05 1.3E-09 80.9 10.1 53 163-216 4-56 (814)
190 TIGR00376 DNA helicase, putati 97.9 7.1E-05 1.5E-09 79.1 10.5 67 5-78 157-223 (637)
191 PRK10536 hypothetical protein; 97.7 0.0001 2.3E-09 67.7 7.3 60 3-68 57-116 (262)
192 PF13872 AAA_34: P-loop contai 97.6 0.00016 3.5E-09 67.7 6.9 64 5-71 37-106 (303)
193 PF00580 UvrD-helicase: UvrD/R 97.5 0.00016 3.6E-09 70.0 6.5 67 6-78 1-67 (315)
194 COG3421 Uncharacterized protei 97.5 0.0042 9.1E-08 62.7 15.2 45 29-76 2-46 (812)
195 PRK10875 recD exonuclease V su 97.4 0.0005 1.1E-08 72.1 8.3 64 7-75 154-218 (615)
196 TIGR01447 recD exodeoxyribonuc 97.3 0.00074 1.6E-08 70.6 8.8 63 8-75 148-212 (586)
197 TIGR01448 recD_rel helicase, p 97.3 0.00065 1.4E-08 73.1 8.5 62 5-72 323-384 (720)
198 PRK13889 conjugal transfer rel 97.2 0.0013 2.8E-08 72.3 9.3 61 5-72 346-406 (988)
199 KOG0383 Predicted helicase [Ge 97.2 0.00011 2.3E-09 76.5 0.7 77 312-392 615-696 (696)
200 KOG0989 Replication factor C, 97.1 0.00055 1.2E-08 63.6 4.7 39 9-47 40-80 (346)
201 KOG1805 DNA replication helica 97.1 0.0019 4E-08 68.6 8.9 63 5-74 669-731 (1100)
202 PRK10919 ATP-dependent DNA hel 97.1 0.0016 3.5E-08 69.7 8.7 72 5-82 2-73 (672)
203 TIGR02768 TraA_Ti Ti-type conj 97.1 0.0024 5.2E-08 69.0 9.6 61 5-72 352-412 (744)
204 PF05970 PIF1: PIF1-like helic 97.1 0.0012 2.6E-08 65.4 6.7 63 5-71 1-65 (364)
205 PRK04296 thymidine kinase; Pro 97.0 0.0023 5E-08 57.1 7.2 36 26-65 4-39 (190)
206 TIGR01075 uvrD DNA helicase II 97.0 0.0025 5.5E-08 69.0 8.6 74 4-83 3-76 (715)
207 PRK11773 uvrD DNA-dependent he 96.9 0.003 6.6E-08 68.4 8.5 73 4-82 8-80 (721)
208 PRK11054 helD DNA helicase IV; 96.9 0.0021 4.5E-08 68.6 7.0 71 5-81 196-266 (684)
209 PF13401 AAA_22: AAA domain; P 96.7 0.016 3.4E-07 48.1 10.0 21 23-43 3-23 (131)
210 COG1875 NYN ribonuclease and A 96.6 0.008 1.7E-07 57.5 8.0 67 1-71 224-291 (436)
211 PRK13826 Dtr system oriT relax 96.6 0.0091 2E-07 66.3 9.4 61 5-72 381-441 (1102)
212 TIGR01074 rep ATP-dependent DN 96.6 0.0047 1E-07 66.5 7.2 72 5-82 1-72 (664)
213 PRK06526 transposase; Provisio 96.5 0.0057 1.2E-07 57.1 6.3 48 19-71 93-140 (254)
214 TIGR02881 spore_V_K stage V sp 96.4 0.0079 1.7E-07 56.7 7.0 19 25-43 43-61 (261)
215 PF13871 Helicase_C_4: Helicas 96.4 0.014 3E-07 54.6 8.4 80 370-449 52-143 (278)
216 cd00009 AAA The AAA+ (ATPases 96.4 0.015 3.3E-07 48.7 7.7 38 24-65 19-56 (151)
217 PRK12723 flagellar biosynthesi 96.3 0.019 4.1E-07 56.9 9.0 39 25-63 175-213 (388)
218 TIGR01073 pcrA ATP-dependent D 96.3 0.0067 1.4E-07 66.0 6.1 73 4-82 3-75 (726)
219 PRK08769 DNA polymerase III su 96.3 0.016 3.4E-07 56.0 7.9 43 3-45 2-47 (319)
220 PRK14964 DNA polymerase III su 96.2 0.0082 1.8E-07 61.2 6.1 37 9-45 17-56 (491)
221 PRK10917 ATP-dependent DNA hel 96.2 0.026 5.6E-07 60.8 9.7 81 325-405 309-391 (681)
222 PRK08181 transposase; Validate 96.1 0.056 1.2E-06 50.9 10.6 63 6-73 88-150 (269)
223 cd01124 KaiC KaiC is a circadi 96.0 0.093 2E-06 46.4 11.2 43 27-74 2-44 (187)
224 PRK05707 DNA polymerase III su 96.0 0.025 5.4E-07 55.0 7.8 40 5-44 3-42 (328)
225 CHL00181 cbbX CbbX; Provisiona 96.0 0.021 4.6E-07 54.4 7.1 21 24-44 59-79 (287)
226 PRK14712 conjugal transfer nic 95.9 0.024 5.3E-07 65.1 8.5 65 5-72 835-900 (1623)
227 TIGR02785 addA_Gpos recombinat 95.9 0.07 1.5E-06 61.3 12.0 66 6-78 2-67 (1232)
228 PF03354 Terminase_1: Phage Te 95.7 0.019 4E-07 59.2 6.2 72 8-79 1-77 (477)
229 TIGR02880 cbbX_cfxQ probable R 95.7 0.037 7.9E-07 52.8 7.7 20 24-43 58-77 (284)
230 PRK14956 DNA polymerase III su 95.7 0.018 4E-07 58.2 5.7 36 9-44 22-60 (484)
231 PRK06893 DNA replication initi 95.7 0.051 1.1E-06 50.1 8.2 36 25-64 40-75 (229)
232 TIGR00643 recG ATP-dependent D 95.6 0.048 1E-06 58.2 9.1 81 325-405 283-365 (630)
233 PRK13709 conjugal transfer nic 95.6 0.044 9.6E-07 63.9 9.0 65 5-72 967-1032(1747)
234 PF01695 IstB_IS21: IstB-like 95.5 0.019 4.1E-07 50.6 4.5 52 18-74 41-92 (178)
235 PRK14961 DNA polymerase III su 95.5 0.021 4.5E-07 56.6 5.3 35 9-43 20-57 (363)
236 PF06733 DEAD_2: DEAD_2; Inte 95.5 0.0047 1E-07 54.3 0.5 52 153-204 106-158 (174)
237 COG1419 FlhF Flagellar GTP-bin 95.4 0.064 1.4E-06 52.6 8.2 42 24-66 203-244 (407)
238 PRK06645 DNA polymerase III su 95.4 0.035 7.7E-07 57.0 6.7 37 9-45 25-64 (507)
239 cd01120 RecA-like_NTPases RecA 95.4 0.18 3.9E-06 43.1 10.3 38 27-68 2-39 (165)
240 PRK14949 DNA polymerase III su 95.4 0.02 4.3E-07 61.8 4.9 35 9-43 20-57 (944)
241 PRK14960 DNA polymerase III su 95.3 0.023 5E-07 59.4 5.1 36 9-44 19-57 (702)
242 PRK07003 DNA polymerase III su 95.3 0.037 8.1E-07 58.7 6.6 35 9-43 20-57 (830)
243 PF13177 DNA_pol3_delta2: DNA 95.3 0.075 1.6E-06 46.0 7.5 38 9-46 1-41 (162)
244 TIGR02760 TraI_TIGR conjugativ 95.3 0.078 1.7E-06 63.3 9.8 64 5-74 429-492 (1960)
245 COG1435 Tdk Thymidine kinase [ 95.2 0.099 2.1E-06 45.9 7.9 39 25-67 5-43 (201)
246 PLN03025 replication factor C 95.2 0.05 1.1E-06 52.9 6.9 19 25-43 35-53 (319)
247 PRK14962 DNA polymerase III su 95.2 0.052 1.1E-06 55.5 7.2 35 9-43 18-55 (472)
248 TIGR03499 FlhF flagellar biosy 95.2 0.12 2.5E-06 49.3 9.2 38 24-63 194-231 (282)
249 PRK13833 conjugal transfer pro 95.2 0.028 6E-07 54.3 4.9 59 6-69 129-187 (323)
250 COG1474 CDC6 Cdc6-related prot 95.2 0.07 1.5E-06 52.6 7.7 45 7-52 22-69 (366)
251 PF10593 Z1: Z1 domain; Inter 95.2 0.098 2.1E-06 48.3 8.2 86 354-445 111-202 (239)
252 COG1484 DnaC DNA replication p 95.1 0.052 1.1E-06 50.7 6.4 67 5-76 83-152 (254)
253 PF05621 TniB: Bacterial TniB 95.1 0.062 1.3E-06 50.8 6.6 16 25-40 62-77 (302)
254 PF00308 Bac_DnaA: Bacterial d 95.0 0.19 4E-06 46.0 9.5 38 25-64 35-72 (219)
255 PRK14958 DNA polymerase III su 94.9 0.033 7.2E-07 57.5 5.0 35 9-43 20-57 (509)
256 PRK00149 dnaA chromosomal repl 94.9 0.15 3.3E-06 52.1 9.7 44 25-71 149-192 (450)
257 PRK07993 DNA polymerase III su 94.9 0.062 1.3E-06 52.4 6.5 40 6-45 3-45 (334)
258 PRK14873 primosome assembly pr 94.9 0.2 4.2E-06 53.5 10.7 92 312-405 172-265 (665)
259 PRK09112 DNA polymerase III su 94.8 0.094 2E-06 51.5 7.6 41 9-50 27-70 (351)
260 KOG1001 Helicase-like transcri 94.8 0.082 1.8E-06 56.1 7.5 102 327-431 540-643 (674)
261 PRK06871 DNA polymerase III su 94.8 0.079 1.7E-06 51.3 6.8 40 6-45 3-45 (325)
262 TIGR02760 TraI_TIGR conjugativ 94.8 0.076 1.7E-06 63.4 7.9 63 5-72 1019-1084(1960)
263 TIGR00595 priA primosomal prot 94.8 0.17 3.8E-06 52.3 9.7 78 325-405 24-101 (505)
264 TIGR00580 mfd transcription-re 94.7 0.12 2.5E-06 57.3 8.7 81 325-405 499-581 (926)
265 PRK05580 primosome assembly pr 94.7 0.19 4.2E-06 54.0 10.3 79 325-406 189-267 (679)
266 PRK14963 DNA polymerase III su 94.7 0.072 1.6E-06 54.9 6.7 35 9-43 18-55 (504)
267 TIGR02782 TrbB_P P-type conjug 94.7 0.054 1.2E-06 52.0 5.4 58 7-69 118-175 (299)
268 PRK12323 DNA polymerase III su 94.7 0.049 1.1E-06 56.9 5.4 35 9-43 20-57 (700)
269 PTZ00112 origin recognition co 94.6 0.081 1.8E-06 56.9 6.9 42 7-49 760-805 (1164)
270 PRK09111 DNA polymerase III su 94.6 0.082 1.8E-06 55.6 7.0 37 9-45 28-67 (598)
271 PRK14955 DNA polymerase III su 94.6 0.062 1.3E-06 54.0 5.8 37 9-45 20-59 (397)
272 PRK14722 flhF flagellar biosyn 94.6 0.27 5.9E-06 48.4 10.1 40 22-63 135-174 (374)
273 PRK13894 conjugal transfer ATP 94.6 0.044 9.5E-07 53.0 4.5 59 6-69 133-191 (319)
274 COG1110 Reverse gyrase [DNA re 94.5 0.16 3.4E-06 55.1 8.7 75 315-389 114-191 (1187)
275 PRK07994 DNA polymerase III su 94.5 0.046 1E-06 57.6 4.8 37 9-45 20-59 (647)
276 COG4962 CpaF Flp pilus assembl 94.4 0.056 1.2E-06 51.7 4.7 61 3-71 155-215 (355)
277 PRK08691 DNA polymerase III su 94.4 0.048 1E-06 57.5 4.6 36 9-44 20-58 (709)
278 PF00448 SRP54: SRP54-type pro 94.3 0.3 6.5E-06 43.7 9.0 34 26-63 3-36 (196)
279 PRK14957 DNA polymerase III su 94.3 0.066 1.4E-06 55.5 5.3 37 9-45 20-59 (546)
280 PRK07471 DNA polymerase III su 94.3 0.2 4.4E-06 49.4 8.5 38 9-46 23-63 (365)
281 COG0210 UvrD Superfamily I DNA 94.3 0.15 3.2E-06 55.0 8.2 89 5-99 2-90 (655)
282 PRK06964 DNA polymerase III su 94.2 0.17 3.6E-06 49.4 7.7 40 6-45 2-42 (342)
283 PTZ00293 thymidine kinase; Pro 94.2 0.12 2.6E-06 46.5 6.0 40 24-67 4-43 (211)
284 PRK08451 DNA polymerase III su 94.1 0.08 1.7E-06 54.7 5.5 35 9-43 18-55 (535)
285 TIGR00678 holB DNA polymerase 94.1 0.26 5.7E-06 43.7 8.3 19 25-43 15-33 (188)
286 PRK00411 cdc6 cell division co 94.1 0.091 2E-06 52.7 5.9 25 25-50 56-80 (394)
287 PRK14952 DNA polymerase III su 94.1 0.053 1.1E-06 56.7 4.2 37 9-45 17-56 (584)
288 PRK08699 DNA polymerase III su 94.1 0.16 3.5E-06 49.3 7.3 39 6-44 2-41 (325)
289 PRK10689 transcription-repair 94.1 0.17 3.7E-06 57.3 8.5 80 325-404 648-729 (1147)
290 TIGR00362 DnaA chromosomal rep 94.1 0.21 4.5E-06 50.4 8.4 38 25-64 137-174 (405)
291 PRK11889 flhF flagellar biosyn 94.1 0.19 4.2E-06 49.5 7.7 35 25-63 242-276 (436)
292 PRK07764 DNA polymerase III su 94.1 0.13 2.8E-06 56.2 7.1 37 9-45 19-58 (824)
293 PRK14087 dnaA chromosomal repl 94.0 0.29 6.3E-06 49.9 9.2 44 25-71 142-185 (450)
294 PRK14974 cell division protein 93.9 0.4 8.6E-06 46.7 9.6 35 25-63 141-175 (336)
295 PHA02533 17 large terminase pr 93.9 0.46 9.9E-06 49.4 10.6 67 5-77 59-125 (534)
296 PF13173 AAA_14: AAA domain 93.9 0.35 7.5E-06 39.9 8.1 18 24-41 2-19 (128)
297 PRK06647 DNA polymerase III su 93.8 0.075 1.6E-06 55.6 4.7 35 9-43 20-57 (563)
298 PRK05642 DNA replication initi 93.8 0.3 6.6E-06 45.1 8.3 36 25-64 46-81 (234)
299 COG3972 Superfamily I DNA and 93.8 0.24 5.2E-06 49.4 7.7 50 28-79 180-229 (660)
300 PRK14951 DNA polymerase III su 93.8 0.095 2E-06 55.2 5.4 36 9-44 20-58 (618)
301 PRK05703 flhF flagellar biosyn 93.8 0.27 5.8E-06 49.7 8.4 38 24-63 221-258 (424)
302 COG2805 PilT Tfp pilus assembl 93.8 0.058 1.3E-06 50.5 3.3 44 25-71 126-177 (353)
303 PHA03333 putative ATPase subun 93.8 0.67 1.5E-05 48.8 11.2 52 25-79 188-239 (752)
304 PRK05896 DNA polymerase III su 93.7 0.12 2.5E-06 54.0 5.8 36 9-44 20-58 (605)
305 PHA03368 DNA packaging termina 93.7 0.69 1.5E-05 48.5 11.1 54 24-79 254-307 (738)
306 PRK05563 DNA polymerase III su 93.6 0.094 2E-06 54.9 5.1 36 9-44 20-58 (559)
307 TIGR02397 dnaX_nterm DNA polym 93.6 0.14 3E-06 50.5 6.1 35 9-43 18-55 (355)
308 COG1444 Predicted P-loop ATPas 93.6 0.23 5E-06 52.8 7.8 65 6-72 212-277 (758)
309 PRK13342 recombination factor 93.5 0.17 3.6E-06 51.2 6.5 19 25-43 37-55 (413)
310 PRK14954 DNA polymerase III su 93.5 0.12 2.6E-06 54.5 5.5 36 9-44 20-58 (620)
311 PRK06090 DNA polymerase III su 93.4 0.2 4.3E-06 48.4 6.5 39 5-43 3-44 (319)
312 cd00984 DnaB_C DnaB helicase C 93.4 0.22 4.7E-06 46.2 6.7 54 16-72 5-61 (242)
313 COG1198 PriA Primosomal protei 93.4 0.34 7.4E-06 51.8 8.8 91 310-403 227-319 (730)
314 PRK06835 DNA replication prote 93.4 0.095 2.1E-06 50.9 4.3 44 24-72 183-226 (329)
315 COG3973 Superfamily I DNA and 93.4 0.29 6.3E-06 50.2 7.7 49 24-72 226-276 (747)
316 PRK11823 DNA repair protein Ra 93.4 0.32 6.9E-06 49.6 8.2 48 20-72 76-123 (446)
317 PRK14969 DNA polymerase III su 93.3 0.09 1.9E-06 54.7 4.2 36 9-44 20-58 (527)
318 PF14617 CMS1: U3-containing 9 93.3 0.27 5.9E-06 45.5 6.9 35 166-201 177-211 (252)
319 PRK14723 flhF flagellar biosyn 93.3 0.4 8.8E-06 51.5 9.1 24 24-47 185-208 (767)
320 cd01121 Sms Sms (bacterial rad 93.3 0.39 8.5E-06 47.5 8.4 46 21-71 79-124 (372)
321 COG1197 Mfd Transcription-repa 93.3 2.6 5.6E-05 47.0 15.2 79 325-403 642-722 (1139)
322 PF06745 KaiC: KaiC; InterPro 93.3 0.16 3.6E-06 46.5 5.5 55 20-78 15-69 (226)
323 KOG0742 AAA+-type ATPase [Post 93.2 0.18 3.9E-06 49.1 5.8 17 25-41 385-401 (630)
324 PRK14950 DNA polymerase III su 93.2 0.23 5.1E-06 52.5 7.2 36 9-44 20-58 (585)
325 KOG0738 AAA+-type ATPase [Post 93.2 0.17 3.7E-06 49.0 5.5 47 18-72 238-285 (491)
326 PRK12726 flagellar biosynthesi 93.1 0.29 6.4E-06 48.0 7.1 37 23-63 205-241 (407)
327 TIGR03877 thermo_KaiC_1 KaiC d 93.1 0.14 3.1E-06 47.4 4.8 52 20-76 17-68 (237)
328 TIGR02640 gas_vesic_GvpN gas v 93.0 0.057 1.2E-06 50.9 2.2 38 6-43 3-40 (262)
329 COG2804 PulE Type II secretory 93.0 0.099 2.1E-06 52.7 3.9 43 7-52 243-285 (500)
330 PRK14965 DNA polymerase III su 93.0 0.11 2.3E-06 54.8 4.3 35 9-43 20-57 (576)
331 PRK05973 replicative DNA helic 92.9 0.18 3.9E-06 46.4 5.1 44 17-64 57-100 (237)
332 PRK12377 putative replication 92.8 0.16 3.4E-06 47.3 4.6 45 25-74 102-146 (248)
333 smart00382 AAA ATPases associa 92.8 0.11 2.4E-06 42.8 3.4 42 24-69 2-43 (148)
334 PRK09183 transposase/IS protei 92.8 0.32 7E-06 45.6 6.8 48 20-72 98-145 (259)
335 COG0513 SrmB Superfamily II DN 92.6 0.42 9.1E-06 49.7 8.0 72 329-404 102-181 (513)
336 cd01130 VirB11-like_ATPase Typ 92.5 0.21 4.6E-06 44.3 4.9 39 6-48 10-48 (186)
337 COG1200 RecG RecG-like helicas 92.4 0.7 1.5E-05 48.3 9.1 93 311-403 295-390 (677)
338 PRK10867 signal recognition pa 92.4 1.4 3.1E-05 44.4 11.2 40 26-68 102-143 (433)
339 PRK12727 flagellar biosynthesi 92.4 0.6 1.3E-05 48.0 8.4 41 21-63 347-387 (559)
340 cd01129 PulE-GspE PulE/GspE Th 92.3 0.19 4.2E-06 47.3 4.7 40 7-49 65-104 (264)
341 PF06309 Torsin: Torsin; Inte 92.3 0.33 7.2E-06 39.6 5.3 36 28-64 57-92 (127)
342 cd01131 PilT Pilus retraction 92.2 0.19 4.1E-06 45.1 4.4 36 27-65 4-39 (198)
343 TIGR00959 ffh signal recogniti 92.2 1.4 3E-05 44.5 10.8 35 26-63 101-135 (428)
344 TIGR03878 thermo_KaiC_2 KaiC d 92.2 0.28 6.1E-06 46.1 5.7 49 20-72 32-83 (259)
345 KOG0701 dsRNA-specific nucleas 92.2 0.11 2.4E-06 59.5 3.3 95 328-424 294-399 (1606)
346 PRK13851 type IV secretion sys 92.2 0.14 3E-06 50.1 3.6 42 23-69 161-202 (344)
347 PRK14959 DNA polymerase III su 92.2 0.12 2.6E-06 54.2 3.3 37 9-45 20-59 (624)
348 PRK07940 DNA polymerase III su 92.2 0.27 5.8E-06 49.1 5.7 20 25-44 37-56 (394)
349 PRK06305 DNA polymerase III su 92.1 0.32 6.9E-06 49.6 6.3 37 9-45 21-60 (451)
350 PF02456 Adeno_IVa2: Adenoviru 92.1 0.38 8.3E-06 45.3 6.1 41 27-69 90-130 (369)
351 COG4626 Phage terminase-like p 92.1 1.6 3.5E-05 44.7 11.0 71 5-75 61-137 (546)
352 PRK06995 flhF flagellar biosyn 92.1 0.85 1.9E-05 46.6 9.2 25 23-47 255-279 (484)
353 PF05127 Helicase_RecD: Helica 92.0 0.056 1.2E-06 47.2 0.5 45 28-75 1-45 (177)
354 PRK12724 flagellar biosynthesi 91.9 0.72 1.6E-05 46.0 8.3 36 25-63 224-259 (432)
355 COG1219 ClpX ATP-dependent pro 91.9 0.12 2.7E-06 48.7 2.8 18 24-41 97-114 (408)
356 PRK14953 DNA polymerase III su 91.9 0.35 7.5E-06 49.8 6.3 36 9-44 20-58 (486)
357 PHA02544 44 clamp loader, smal 91.9 0.33 7.3E-06 47.0 6.0 33 9-41 25-60 (316)
358 PF05876 Terminase_GpA: Phage 91.9 0.1 2.2E-06 54.6 2.4 63 5-74 16-80 (557)
359 TIGR03600 phage_DnaB phage rep 91.8 0.94 2E-05 45.9 9.3 48 13-63 183-230 (421)
360 TIGR00767 rho transcription te 91.8 0.58 1.3E-05 46.3 7.4 24 18-41 162-185 (415)
361 PF03796 DnaB_C: DnaB-like hel 91.8 0.35 7.7E-06 45.4 5.8 47 15-64 10-56 (259)
362 COG1222 RPT1 ATP-dependent 26S 91.7 0.42 9.1E-06 46.0 6.1 18 24-41 185-202 (406)
363 PRK07133 DNA polymerase III su 91.6 0.34 7.3E-06 51.8 6.0 36 9-44 22-60 (725)
364 PRK07952 DNA replication prote 91.6 0.31 6.7E-06 45.2 5.1 61 7-72 78-142 (244)
365 KOG0339 ATP-dependent RNA heli 91.6 2.3 5.1E-05 42.8 11.2 74 326-403 295-376 (731)
366 CHL00095 clpC Clp protease ATP 91.4 0.16 3.4E-06 56.1 3.4 36 8-43 512-558 (821)
367 PRK14948 DNA polymerase III su 91.4 0.4 8.8E-06 50.8 6.3 36 9-44 20-58 (620)
368 PRK10436 hypothetical protein; 91.4 0.22 4.9E-06 50.6 4.3 42 7-51 203-244 (462)
369 TIGR02524 dot_icm_DotB Dot/Icm 91.4 0.26 5.7E-06 48.5 4.6 27 23-50 133-159 (358)
370 PRK13900 type IV secretion sys 91.4 0.17 3.6E-06 49.3 3.2 41 23-68 159-199 (332)
371 PF12846 AAA_10: AAA-like doma 91.4 0.26 5.7E-06 47.1 4.6 42 24-69 1-42 (304)
372 TIGR01425 SRP54_euk signal rec 91.3 2.7 5.8E-05 42.3 11.6 34 26-63 102-135 (429)
373 PF01580 FtsK_SpoIIIE: FtsK/Sp 91.1 0.28 6.1E-06 44.2 4.3 43 23-65 37-79 (205)
374 COG3267 ExeA Type II secretory 91.1 0.29 6.3E-06 44.9 4.2 38 12-50 38-76 (269)
375 PRK07004 replicative DNA helic 91.1 1.1 2.4E-05 45.8 9.0 46 15-63 204-249 (460)
376 TIGR02639 ClpA ATP-dependent C 91.1 0.45 9.7E-06 51.9 6.4 36 10-45 187-224 (731)
377 PRK14701 reverse gyrase; Provi 91.0 0.85 1.8E-05 53.6 8.9 64 325-388 121-187 (1638)
378 PRK06904 replicative DNA helic 91.0 1.3 2.9E-05 45.4 9.5 47 15-64 212-258 (472)
379 PF00437 T2SE: Type II/IV secr 91.0 0.23 4.9E-06 47.0 3.7 43 22-68 125-167 (270)
380 PRK09376 rho transcription ter 91.0 0.96 2.1E-05 44.7 7.9 30 20-50 165-194 (416)
381 PRK03992 proteasome-activating 90.8 0.61 1.3E-05 46.6 6.7 18 24-41 165-182 (389)
382 PRK08058 DNA polymerase III su 90.8 0.49 1.1E-05 46.2 5.9 38 6-43 7-47 (329)
383 PRK14971 DNA polymerase III su 90.7 0.51 1.1E-05 50.1 6.2 35 9-43 21-58 (614)
384 PF13481 AAA_25: AAA domain; P 90.6 0.35 7.6E-06 43.0 4.4 60 16-76 23-89 (193)
385 PRK06921 hypothetical protein; 90.6 0.42 9.1E-06 45.1 5.0 45 24-72 117-161 (266)
386 TIGR01420 pilT_fam pilus retra 90.6 0.36 7.9E-06 47.4 4.8 43 24-69 122-164 (343)
387 KOG1807 Helicases [Replication 90.5 0.41 8.8E-06 50.3 5.0 63 7-73 380-444 (1025)
388 KOG0298 DEAD box-containing he 90.4 0.8 1.7E-05 50.9 7.4 161 17-280 367-560 (1394)
389 TIGR02525 plasmid_TraJ plasmid 90.4 0.39 8.5E-06 47.4 4.8 27 24-51 149-175 (372)
390 KOG1001 Helicase-like transcri 90.4 0.048 1E-06 57.8 -1.7 111 25-205 153-268 (674)
391 COG1074 RecB ATP-dependent exo 90.3 0.41 9E-06 54.7 5.5 58 23-80 15-73 (1139)
392 PRK14721 flhF flagellar biosyn 90.1 1.3 2.8E-05 44.5 8.2 24 23-46 190-213 (420)
393 TIGR03880 KaiC_arch_3 KaiC dom 90.1 0.57 1.2E-05 42.9 5.4 53 20-77 12-64 (224)
394 PHA03372 DNA packaging termina 90.1 1.6 3.5E-05 45.2 8.8 50 25-76 203-252 (668)
395 PRK04328 hypothetical protein; 90.0 0.49 1.1E-05 44.2 4.9 39 21-63 20-58 (249)
396 PRK12422 chromosomal replicati 89.9 0.79 1.7E-05 46.6 6.7 42 25-71 142-183 (445)
397 COG2256 MGS1 ATPase related to 89.9 1.2 2.5E-05 43.7 7.4 41 25-72 49-89 (436)
398 PHA02244 ATPase-like protein 89.8 0.3 6.5E-06 47.8 3.3 28 14-41 109-136 (383)
399 COG0630 VirB11 Type IV secreto 89.7 0.41 8.9E-06 46.2 4.3 56 6-69 128-183 (312)
400 TIGR01547 phage_term_2 phage t 89.7 1.1 2.4E-05 44.9 7.6 42 26-68 3-44 (396)
401 PRK08506 replicative DNA helic 89.7 1.9 4E-05 44.4 9.2 47 14-64 182-228 (472)
402 TIGR02533 type_II_gspE general 89.7 0.37 8E-06 49.6 4.1 41 7-50 227-267 (486)
403 PRK07399 DNA polymerase III su 89.6 0.45 9.7E-06 46.0 4.4 37 9-45 8-47 (314)
404 TIGR01054 rgy reverse gyrase. 89.6 0.72 1.6E-05 52.6 6.6 80 326-405 121-207 (1171)
405 PRK08533 flagellar accessory p 89.6 0.59 1.3E-05 43.1 5.0 41 21-65 21-61 (230)
406 KOG0727 26S proteasome regulat 89.5 4.2 9.2E-05 37.3 10.1 16 24-39 189-204 (408)
407 PF14516 AAA_35: AAA-like doma 89.5 0.97 2.1E-05 44.2 6.7 47 9-62 19-65 (331)
408 TIGR02538 type_IV_pilB type IV 89.4 0.31 6.6E-06 51.3 3.4 41 7-50 301-341 (564)
409 PRK13531 regulatory ATPase Rav 89.3 0.28 6.1E-06 49.8 2.8 36 8-43 23-58 (498)
410 TIGR02237 recomb_radB DNA repa 89.2 0.56 1.2E-05 42.3 4.6 42 20-65 8-49 (209)
411 PF13555 AAA_29: P-loop contai 89.2 0.6 1.3E-05 32.9 3.6 17 24-40 23-39 (62)
412 KOG0739 AAA+-type ATPase [Post 89.1 0.94 2E-05 42.5 5.8 40 25-72 167-206 (439)
413 PRK14086 dnaA chromosomal repl 89.1 3.2 7E-05 43.6 10.4 48 25-75 315-362 (617)
414 PRK08840 replicative DNA helic 89.0 2.9 6.2E-05 42.8 10.0 46 15-63 208-253 (464)
415 PF01935 DUF87: Domain of unkn 89.0 0.64 1.4E-05 42.7 4.9 41 24-67 23-63 (229)
416 TIGR01241 FtsH_fam ATP-depende 89.0 0.86 1.9E-05 47.3 6.3 17 25-41 89-105 (495)
417 cd01122 GP4d_helicase GP4d_hel 88.9 0.43 9.4E-06 45.1 3.8 46 16-64 22-67 (271)
418 PF10412 TrwB_AAD_bind: Type I 88.8 0.9 1.9E-05 45.4 6.1 48 23-74 14-61 (386)
419 COG0467 RAD55 RecA-superfamily 88.8 0.62 1.3E-05 43.8 4.7 41 20-64 19-59 (260)
420 TIGR02012 tigrfam_recA protein 88.8 1.1 2.3E-05 43.4 6.3 54 14-71 43-98 (321)
421 PRK06321 replicative DNA helic 88.7 3.2 6.8E-05 42.6 10.0 47 14-63 216-262 (472)
422 PF01078 Mg_chelatase: Magnesi 88.7 0.15 3.3E-06 45.6 0.4 32 9-40 7-38 (206)
423 PF01443 Viral_helicase1: Vira 88.7 0.31 6.8E-06 44.8 2.6 14 27-40 1-14 (234)
424 COG1111 MPH1 ERCC4-like helica 88.5 4.8 0.0001 40.7 10.6 127 321-453 54-191 (542)
425 PRK06067 flagellar accessory p 88.5 1.1 2.3E-05 41.4 5.9 54 20-78 21-74 (234)
426 KOG0058 Peptide exporter, ABC 88.4 1.4 3.1E-05 46.4 7.3 74 3-80 473-547 (716)
427 cd01126 TraG_VirD4 The TraG/Tr 88.3 0.26 5.6E-06 49.3 1.9 48 26-79 1-48 (384)
428 TIGR02788 VirB11 P-type DNA tr 88.3 0.51 1.1E-05 45.6 3.8 42 22-68 142-183 (308)
429 TIGR03881 KaiC_arch_4 KaiC dom 88.3 0.71 1.5E-05 42.4 4.6 41 20-64 16-56 (229)
430 PF05496 RuvB_N: Holliday junc 88.2 1.2 2.7E-05 40.4 5.9 19 25-43 51-69 (233)
431 cd00268 DEADc DEAD-box helicas 88.2 3.8 8.1E-05 36.6 9.3 78 325-406 68-152 (203)
432 COG0470 HolB ATPase involved i 88.2 4.1 8.8E-05 39.4 10.2 22 24-45 23-45 (325)
433 cd00983 recA RecA is a bacter 88.0 1.2 2.6E-05 43.0 6.1 54 14-71 43-98 (325)
434 PRK08006 replicative DNA helic 87.7 4.1 9E-05 41.8 10.1 47 14-63 214-260 (471)
435 PF13207 AAA_17: AAA domain; P 87.6 0.44 9.6E-06 38.6 2.6 15 27-41 2-16 (121)
436 TIGR03346 chaperone_ClpB ATP-d 87.6 0.61 1.3E-05 51.7 4.4 97 9-203 177-278 (852)
437 PRK10865 protein disaggregatio 87.6 0.67 1.5E-05 51.3 4.6 97 9-203 182-283 (857)
438 PF13479 AAA_24: AAA domain 87.6 1.4 3E-05 40.0 6.1 36 168-204 46-81 (213)
439 PF04665 Pox_A32: Poxvirus A32 87.6 0.74 1.6E-05 42.4 4.2 37 25-65 14-50 (241)
440 PRK08116 hypothetical protein; 87.5 1.2 2.7E-05 41.9 5.8 44 25-73 115-158 (268)
441 COG2909 MalT ATP-dependent tra 87.3 0.75 1.6E-05 49.2 4.5 31 190-220 128-158 (894)
442 KOG0347 RNA helicase [RNA proc 87.2 1.4 3E-05 44.8 6.1 55 329-387 266-321 (731)
443 PRK08903 DnaA regulatory inact 87.1 1.3 2.7E-05 40.7 5.5 38 23-64 41-78 (227)
444 TIGR02784 addA_alphas double-s 87.0 1.5 3.2E-05 50.5 7.2 56 23-79 9-64 (1141)
445 cd01394 radB RadB. The archaea 87.0 0.93 2E-05 41.2 4.6 45 15-63 9-54 (218)
446 cd01127 TrwB Bacterial conjuga 87.0 0.95 2.1E-05 45.7 5.0 47 24-74 42-88 (410)
447 COG2812 DnaX DNA polymerase II 87.0 0.62 1.3E-05 47.7 3.6 27 189-215 117-143 (515)
448 KOG0330 ATP-dependent RNA heli 86.9 3.1 6.6E-05 40.6 7.9 87 313-403 116-210 (476)
449 PF00004 AAA: ATPase family as 86.9 0.58 1.3E-05 38.4 3.0 15 27-41 1-15 (132)
450 TIGR02655 circ_KaiC circadian 86.9 0.87 1.9E-05 47.0 4.8 55 20-78 17-71 (484)
451 PF02534 T4SS-DNA_transf: Type 86.9 0.43 9.2E-06 49.2 2.5 50 25-80 45-94 (469)
452 COG1126 GlnQ ABC-type polar am 86.8 0.51 1.1E-05 42.3 2.5 41 10-52 14-54 (240)
453 PRK00771 signal recognition pa 86.8 3.3 7.1E-05 42.0 8.7 35 25-63 96-130 (437)
454 PRK11634 ATP-dependent RNA hel 86.7 2.4 5.1E-05 45.3 8.0 76 325-404 73-156 (629)
455 TIGR03345 VI_ClpV1 type VI sec 86.6 2.3 4.9E-05 47.2 8.0 34 9-42 570-614 (852)
456 TIGR02655 circ_KaiC circadian 86.6 0.96 2.1E-05 46.7 4.9 53 21-78 260-312 (484)
457 PRK12402 replication factor C 86.6 0.42 9.1E-06 46.7 2.2 34 10-43 20-55 (337)
458 PF13191 AAA_16: AAA ATPase do 86.6 0.87 1.9E-05 39.9 4.1 44 7-51 5-50 (185)
459 PRK08939 primosomal protein Dn 86.6 1.4 3E-05 42.4 5.7 46 24-74 156-201 (306)
460 KOG0733 Nuclear AAA ATPase (VC 86.5 2.9 6.2E-05 43.3 7.9 110 25-273 224-340 (802)
461 TIGR03819 heli_sec_ATPase heli 86.5 0.87 1.9E-05 44.5 4.3 42 23-69 177-218 (340)
462 PRK06731 flhF flagellar biosyn 86.5 3.4 7.3E-05 39.0 8.0 22 25-46 76-97 (270)
463 PRK09361 radB DNA repair and r 86.4 1.1 2.4E-05 41.0 4.7 46 15-64 13-59 (225)
464 PF13238 AAA_18: AAA domain; P 86.4 0.44 9.5E-06 38.9 1.9 17 27-43 1-17 (129)
465 PF07728 AAA_5: AAA domain (dy 86.1 0.55 1.2E-05 39.2 2.4 18 26-43 1-18 (139)
466 KOG1533 Predicted GTPase [Gene 86.0 0.79 1.7E-05 41.5 3.3 25 27-52 5-29 (290)
467 CHL00095 clpC Clp protease ATP 85.9 1.1 2.5E-05 49.4 5.3 22 25-46 201-222 (821)
468 PHA00012 I assembly protein 85.8 2.3 5E-05 40.8 6.4 25 27-51 4-28 (361)
469 PRK05800 cobU adenosylcobinami 85.7 5.7 0.00012 34.6 8.6 39 26-71 3-41 (170)
470 PRK08727 hypothetical protein; 85.4 1.4 3.1E-05 40.5 5.0 42 25-71 42-83 (233)
471 PF01745 IPT: Isopentenyl tran 85.4 1.1 2.3E-05 40.2 3.9 17 27-43 4-20 (233)
472 PRK13764 ATPase; Provisional 85.2 0.82 1.8E-05 48.0 3.6 27 23-50 256-282 (602)
473 TIGR03743 SXT_TraD conjugative 85.2 1.4 3.1E-05 46.8 5.5 54 23-80 175-230 (634)
474 TIGR03015 pepcterm_ATPase puta 85.2 0.58 1.3E-05 44.1 2.3 38 6-43 24-62 (269)
475 PF05729 NACHT: NACHT domain 85.1 1.4 3.1E-05 37.6 4.6 44 26-70 2-47 (166)
476 cd00544 CobU Adenosylcobinamid 85.0 1.1 2.4E-05 39.0 3.8 42 27-75 2-43 (169)
477 PRK11192 ATP-dependent RNA hel 85.0 3.3 7.1E-05 42.1 7.9 76 326-405 73-155 (434)
478 PF13671 AAA_33: AAA domain; P 85.0 0.55 1.2E-05 39.3 1.9 14 27-40 2-15 (143)
479 PRK11331 5-methylcytosine-spec 84.9 0.6 1.3E-05 47.0 2.3 29 14-42 184-212 (459)
480 PRK13897 type IV secretion sys 84.9 0.67 1.5E-05 48.8 2.8 49 25-79 159-207 (606)
481 KOG0991 Replication factor C, 84.8 0.9 1.9E-05 41.1 3.1 22 25-46 49-70 (333)
482 KOG0331 ATP-dependent RNA heli 84.8 4.8 0.0001 41.3 8.7 74 326-403 165-245 (519)
483 PRK09354 recA recombinase A; P 84.7 2.2 4.8E-05 41.7 6.1 48 20-71 56-103 (349)
484 TIGR00150 HI0065_YjeE ATPase, 84.6 0.62 1.3E-05 38.7 1.9 45 20-71 18-62 (133)
485 PRK05636 replicative DNA helic 84.5 5.3 0.00011 41.4 9.1 46 15-63 256-301 (505)
486 TIGR00665 DnaB replicative DNA 84.5 2.4 5.2E-05 43.2 6.6 56 13-71 184-242 (434)
487 KOG0745 Putative ATP-dependent 84.5 1.2 2.5E-05 44.1 4.0 40 24-69 226-265 (564)
488 TIGR01243 CDC48 AAA family ATP 84.4 1.9 4.1E-05 47.1 6.1 75 21-203 484-558 (733)
489 PF09439 SRPRB: Signal recogni 84.4 0.83 1.8E-05 40.1 2.7 19 24-42 3-21 (181)
490 PRK09302 circadian clock prote 84.4 2.1 4.5E-05 44.6 6.1 61 14-78 20-81 (509)
491 TIGR02759 TraD_Ftype type IV c 84.3 1.5 3.3E-05 46.0 5.1 46 23-72 175-220 (566)
492 COG3451 VirB4 Type IV secretor 84.1 1.3 2.9E-05 48.3 4.7 41 25-68 437-477 (796)
493 PRK11776 ATP-dependent RNA hel 84.0 3.7 8.1E-05 42.1 7.8 75 327-405 73-155 (460)
494 TIGR00390 hslU ATP-dependent p 83.9 0.53 1.2E-05 46.9 1.5 19 25-43 48-66 (441)
495 COG1136 SalX ABC-type antimicr 83.9 1.1 2.4E-05 40.7 3.4 31 20-52 27-57 (226)
496 PRK11034 clpA ATP-dependent Cl 83.9 1.8 4E-05 47.0 5.6 82 23-203 206-290 (758)
497 PRK14729 miaA tRNA delta(2)-is 83.9 0.99 2.2E-05 43.1 3.2 19 25-43 5-23 (300)
498 TIGR03744 traC_PFL_4706 conjug 83.8 1.5 3.2E-05 49.0 5.1 41 24-67 475-515 (893)
499 PF12775 AAA_7: P-loop contain 83.8 0.69 1.5E-05 43.7 2.1 18 23-40 32-49 (272)
500 PRK05564 DNA polymerase III su 83.6 3 6.5E-05 40.4 6.6 42 1-43 1-45 (313)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-54 Score=393.64 Aligned_cols=358 Identities=36% Similarity=0.538 Sum_probs=319.9
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 81 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 81 (475)
||..|++.|.++ ++..+.|+|++..|.||||||.+|++|+++.+.+. ...++++|++|||+||.|
T Consensus 80 ~~~~PT~IQ~~a----iP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~-p~~~~~lVLtPtRELA~Q---------- 144 (476)
T KOG0330|consen 80 GWKKPTKIQSEA----IPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE-PKLFFALVLTPTRELAQQ---------- 144 (476)
T ss_pred CcCCCchhhhhh----cchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC-CCCceEEEecCcHHHHHH----------
Confidence 789999999987 55666799999999999999999999999999876 355789999999999999
Q ss_pred cccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHH
Q 011884 82 KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (475)
+++.+..++...++++.++.||.........+
T Consensus 145 -----------------------------I~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L------------------- 176 (476)
T KOG0330|consen 145 -----------------------------IAEQFEALGSGIGLRVAVLVGGMDMMLQANQL------------------- 176 (476)
T ss_pred -----------------------------HHHHHHHhccccCeEEEEEecCchHHHHHHHh-------------------
Confidence 77888899999999999999998776665543
Q ss_pred hhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccc
Q 011884 162 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 241 (475)
Q Consensus 162 ~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (475)
.+.|+|+|+||+.|++++.+-+.+++..++++|+||||++++.+|...+.+|+..++.
T Consensus 177 --~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~-------------------- 234 (476)
T KOG0330|consen 177 --SKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPR-------------------- 234 (476)
T ss_pred --hcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCc--------------------
Confidence 3467999999999999999888899999999999999999999999999999998764
Q ss_pred hhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHHH
Q 011884 242 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 321 (475)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 321 (475)
..+.+++|||++..+.++....+..|..+..... +.+-..+++.+...+...|...|..++
T Consensus 235 ------------------erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~k-y~tv~~lkQ~ylfv~~k~K~~yLV~ll 295 (476)
T KOG0330|consen 235 ------------------ERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSK-YQTVDHLKQTYLFVPGKDKDTYLVYLL 295 (476)
T ss_pred ------------------cceEEEEEeecchhhHHHHhhccCCCeEEeccch-hcchHHhhhheEeccccccchhHHHHH
Confidence 3378999999999999999888888877665543 455577888889999999999999999
Q ss_pred HhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEE
Q 011884 322 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 401 (475)
Q Consensus 322 ~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~V 401 (475)
.+..+..+||||++...++.++-.|...+ +....+||.|++..|...+++|++|..+||+||++.++|+|+|.+++|
T Consensus 296 ~e~~g~s~iVF~~t~~tt~~la~~L~~lg---~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~V 372 (476)
T KOG0330|consen 296 NELAGNSVIVFCNTCNTTRFLALLLRNLG---FQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVV 372 (476)
T ss_pred HhhcCCcEEEEEeccchHHHHHHHHHhcC---cceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEE
Confidence 99999999999999999999999999877 899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCCCCCccCCChhhhhhhh
Q 011884 402 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLR 467 (475)
Q Consensus 402 v~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
|+||.|.+..+|+||+||.+|.|++|.++.+++..|.+.+.+++-.+.+ ..+..+++.+.+-.+.
T Consensus 373 VNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gk-kl~~~~~~~~~~~~l~ 437 (476)
T KOG0330|consen 373 VNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGK-KLPEYKVDKNEVMSLN 437 (476)
T ss_pred EecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhc-CCCccCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999877765 3455566665555443
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-53 Score=415.55 Aligned_cols=358 Identities=32% Similarity=0.512 Sum_probs=315.0
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhh-----hccccceEEEcccHHHHHHHhhhh
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRDLALQVNSAR 76 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~-----~~~~~~vlil~Pt~~L~~q~~~~~ 76 (475)
||..|+|.|.+.|..+ ..|+|++..|.||||||++|++|++.++... ..+++.+||++|||+||.|
T Consensus 110 g~~~PtpIQaq~wp~~----l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~Q----- 180 (519)
T KOG0331|consen 110 GFEKPTPIQAQGWPIA----LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQ----- 180 (519)
T ss_pred CCCCCchhhhccccee----ccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHH-----
Confidence 7999999999976544 4599999999999999999999999998862 1257889999999999999
Q ss_pred hcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCc
Q 011884 77 CKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 156 (475)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (475)
+...+..++..+.++..|++|+.+...+...
T Consensus 181 ----------------------------------V~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~--------------- 211 (519)
T KOG0331|consen 181 ----------------------------------VQAEAREFGKSLRLRSTCVYGGAPKGPQLRD--------------- 211 (519)
T ss_pred ----------------------------------HHHHHHHHcCCCCccEEEEeCCCCccHHHHH---------------
Confidence 6667788888888999999999998888664
Q ss_pred hhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccc
Q 011884 157 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 236 (475)
Q Consensus 157 ~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~ 236 (475)
+.++.+|+|+||+++.+++.... ..++.+.++|+||||++++++|...++.|+..+...
T Consensus 212 ------l~~gvdiviaTPGRl~d~le~g~-~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~-------------- 270 (519)
T KOG0331|consen 212 ------LERGVDVVIATPGRLIDLLEEGS-LNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRP-------------- 270 (519)
T ss_pred ------HhcCCcEEEeCChHHHHHHHcCC-ccccceeEEEeccHHhhhccccHHHHHHHHHhcCCC--------------
Confidence 44577999999999999999855 889999999999999999999999999999987441
Q ss_pred ccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCcc-ccCCchhhhhhhhhccCCCcHH
Q 011884 237 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPL 315 (475)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 315 (475)
..|.++.|||++..+..++..+++++..+.+... .......+.+....++...|..
T Consensus 271 -----------------------~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~ 327 (519)
T KOG0331|consen 271 -----------------------DRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLR 327 (519)
T ss_pred -----------------------cccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHH
Confidence 2268999999999999999999998888777765 4455567888888888778888
Q ss_pred HHHHHHHhc---CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccC
Q 011884 316 YLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 392 (475)
Q Consensus 316 ~l~~~l~~~---~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~G 392 (475)
.|..++... .++|+||||.|+..|+++.+.+...+ +++..+||+.++.+|..+++.|++|+..|||||++.++|
T Consensus 328 ~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~---~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRG 404 (519)
T KOG0331|consen 328 KLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKG---WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARG 404 (519)
T ss_pred HHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcC---cceeeecccccHHHHHHHHHhcccCCcceEEEccccccc
Confidence 888887765 57799999999999999999999866 889999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCCCCCccCCChhhhhhhh
Q 011884 393 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLR 467 (475)
Q Consensus 393 iDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
+|+|++++||+|++|.+...|+||+||.||.|+.|.++.|++..+.+....+.+-++... .++++.+.+..+
T Consensus 405 LDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~---q~v~~~l~~~~~ 476 (519)
T KOG0331|consen 405 LDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAG---QTVPPDLLEYAR 476 (519)
T ss_pred CCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHcc---CCCChHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999988887655 566666666543
No 3
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.3e-50 Score=417.28 Aligned_cols=356 Identities=28% Similarity=0.451 Sum_probs=289.3
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh----ccccceEEEcccHHHHHHHhhhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLPTRDLALQVNSAR 76 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~----~~~~~vlil~Pt~~L~~q~~~~~ 76 (475)
+||.+|+|+|.+||..++ +|++++++||||||||++|++|++..+.... ..++.+||++||++||.|+
T Consensus 148 ~g~~~pt~iQ~~aip~~l----~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi---- 219 (545)
T PTZ00110 148 AGFTEPTPIQVQGWPIAL----SGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQI---- 219 (545)
T ss_pred CCCCCCCHHHHHHHHHHh----cCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHH----
Confidence 689999999999877655 4899999999999999999999988765431 2356899999999999994
Q ss_pred hcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCc
Q 011884 77 CKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 156 (475)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (475)
.+.+..+....++++.+.+|+.+...+...
T Consensus 220 -----------------------------------~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~--------------- 249 (545)
T PTZ00110 220 -----------------------------------REQCNKFGASSKIRNTVAYGGVPKRGQIYA--------------- 249 (545)
T ss_pred -----------------------------------HHHHHHHhcccCccEEEEeCCCCHHHHHHH---------------
Confidence 444556666667888889998776555432
Q ss_pred hhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccc
Q 011884 157 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 236 (475)
Q Consensus 157 ~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~ 236 (475)
+..+++|+|+||++|.+++... ...+.++++||+||||++++.++...+..++..+..
T Consensus 250 ------l~~~~~IlVaTPgrL~d~l~~~-~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~--------------- 307 (545)
T PTZ00110 250 ------LRRGVEILIACPGRLIDFLESN-VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP--------------- 307 (545)
T ss_pred ------HHcCCCEEEECHHHHHHHHHcC-CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCC---------------
Confidence 3346799999999999998864 367889999999999999999998888888876532
Q ss_pred ccccchhhhccccccCCCCCCccchheeeeceeeccCcccccccccc-CceeeecCccccCCchhhhhhhhhccCCCcHH
Q 011884 237 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLPERLESYKLICESKLKPL 315 (475)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (475)
..+.+++|||++.....+....+. .+..+............+.+.........+..
T Consensus 308 -----------------------~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~ 364 (545)
T PTZ00110 308 -----------------------DRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRG 364 (545)
T ss_pred -----------------------CCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHH
Confidence 237899999998877776665554 34443333222222233444444455556777
Q ss_pred HHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCC
Q 011884 316 YLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 393 (475)
Q Consensus 316 ~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~Gi 393 (475)
.|..++... .+.++||||+++..|+.+++.|...+ +.+..+||+++..+|.++++.|++|+.+|||||+++++||
T Consensus 365 ~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g---~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGI 441 (545)
T PTZ00110 365 KLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDG---WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGL 441 (545)
T ss_pred HHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcC---CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCC
Confidence 777777654 56799999999999999999998765 7889999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCCCCCccCCChhhhhh
Q 011884 394 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIES 465 (475)
Q Consensus 394 Dip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 465 (475)
|+|++++||+++.|.++..|+||+||+||.|+.|.+++|++.++....+++.+.+..+. ..+|+.|.+.
T Consensus 442 Di~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~---q~vp~~l~~~ 510 (545)
T PTZ00110 442 DVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAK---QPVPPELEKL 510 (545)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHcc---CCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888887665 4677776655
No 4
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-50 Score=409.13 Aligned_cols=354 Identities=27% Similarity=0.424 Sum_probs=285.6
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh------ccccceEEEcccHHHHHHHhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQVNS 74 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~------~~~~~vlil~Pt~~L~~q~~~ 74 (475)
+||..|+|+|.+|+..++ +|+|++++||||||||++|++|+++.+.... ..++++||++||++||.|
T Consensus 26 ~g~~~pt~iQ~~aip~il----~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Q--- 98 (423)
T PRK04837 26 KGFHNCTPIQALALPLTL----AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQ--- 98 (423)
T ss_pred CCCCCCCHHHHHHHHHHh----CCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHH---
Confidence 699999999999876554 5899999999999999999999998876432 124679999999999999
Q ss_pred hhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccC
Q 011884 75 ARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 154 (475)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (475)
+.+.+..+....++++..++|+.....+...
T Consensus 99 ------------------------------------i~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~------------- 129 (423)
T PRK04837 99 ------------------------------------IHADAEPLAQATGLKLGLAYGGDGYDKQLKV------------- 129 (423)
T ss_pred ------------------------------------HHHHHHHHhccCCceEEEEECCCCHHHHHHH-------------
Confidence 4555666666678899999998765554332
Q ss_pred CchhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccc
Q 011884 155 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 234 (475)
Q Consensus 155 ~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 234 (475)
+..+++|+|+||+++.+++.. ..+.+.+++++|+||||++.+.++...+..++..+....
T Consensus 130 --------l~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~----------- 189 (423)
T PRK04837 130 --------LESGVDILIGTTGRLIDYAKQ-NHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPAN----------- 189 (423)
T ss_pred --------hcCCCCEEEECHHHHHHHHHc-CCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCcc-----------
Confidence 334579999999999999876 347789999999999999999888888888887654311
Q ss_pred ccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcH
Q 011884 235 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 314 (475)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (475)
..+.+++|||++.....+....+.++..+...... .....+.+.........+.
T Consensus 190 -------------------------~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k~ 243 (423)
T PRK04837 190 -------------------------QRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEKM 243 (423)
T ss_pred -------------------------ceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHHH
Confidence 11457899999887777776666666555443222 1222233333333444567
Q ss_pred HHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCC
Q 011884 315 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 394 (475)
Q Consensus 315 ~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiD 394 (475)
..+..++......++||||+++..|+.+++.|.+.+ .++..+||+|+..+|.++++.|++|+.++||||+++++|+|
T Consensus 244 ~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g---~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiD 320 (423)
T PRK04837 244 RLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADG---HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLH 320 (423)
T ss_pred HHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCC---CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCC
Confidence 778888877777899999999999999999998766 89999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCCCCCccCCCh
Q 011884 395 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 460 (475)
Q Consensus 395 ip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 460 (475)
+|++++||++++|.+...|+||+||+||.|+.|.+++|+..++...++.+.+.+... .+..+++.
T Consensus 321 ip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~ 385 (423)
T PRK04837 321 IPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS-IPVSKYDS 385 (423)
T ss_pred ccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC-CCCccCCh
Confidence 999999999999999999999999999999999999999999999999987776554 23344443
No 5
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-50 Score=384.07 Aligned_cols=406 Identities=46% Similarity=0.715 Sum_probs=341.3
Q ss_pred CCCCcccchhhhhhhhhcCCCC-----CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGL-----FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA 75 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~-----~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~ 75 (475)
|+++...|.|..++..++..+. ..+|+.+.||||||||++|.+|+++.+.....++-+++|++||+.|+.|
T Consensus 155 ~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~Q---- 230 (620)
T KOG0350|consen 155 MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQ---- 230 (620)
T ss_pred hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHH----
Confidence 6788999999888887765544 3589999999999999999999999998877788899999999999999
Q ss_pred hhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCC
Q 011884 76 RCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 155 (475)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (475)
+...|..+...+++.++.+.|..+...+..++.+.+.
T Consensus 231 -----------------------------------V~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~-------- 267 (620)
T KOG0350|consen 231 -----------------------------------VYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPP-------- 267 (620)
T ss_pred -----------------------------------HHHHHHHhccCCceEEEecccccchHHHHHHHhcCCC--------
Confidence 5555677777889999999999999888887765431
Q ss_pred chhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccc-----ccccccc
Q 011884 156 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN-----ENRFSDA 230 (475)
Q Consensus 156 ~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~-----~~~~~~~ 230 (475)
....+|+|+||++|.+++.+-+.+.+++++++|||||+++++..|..|+..+...+.... .+.+...
T Consensus 268 --------~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~ 339 (620)
T KOG0350|consen 268 --------ECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQR 339 (620)
T ss_pred --------ccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhc
Confidence 113599999999999999988889999999999999999999999999999998776542 1111111
Q ss_pred ccccccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecC---ccccCCchhhhhhhhh
Q 011884 231 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG---ETRYKLPERLESYKLI 307 (475)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 307 (475)
....+..+..... .....++.+..+++|+|+++....+..+.+..|-.+.+. .-.+.+|..+.+....
T Consensus 340 ~~~~pt~~~e~~t---------~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv 410 (620)
T KOG0350|consen 340 QAPQPTVLSELLT---------KLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVV 410 (620)
T ss_pred ccCCchhhHHHHh---------hcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceee
Confidence 1111111111100 113445666789999999999999999999998555444 3667888888998889
Q ss_pred ccCCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHh-hcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEc
Q 011884 308 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 386 (475)
Q Consensus 308 ~~~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~-~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t 386 (475)
.....+...++..+...+..++|+|+++.+.+.+++..|+ .......++..+.|+++...|.+.+++|..|.+++|||+
T Consensus 411 ~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcS 490 (620)
T KOG0350|consen 411 TEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICS 490 (620)
T ss_pred cccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEeh
Confidence 9999999999999999989999999999999999999999 666777888889999999999999999999999999999
Q ss_pred CCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcC-CCCCccCCChhhhhh
Q 011884 387 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN-DSCPIHSIPSSLIES 465 (475)
Q Consensus 387 ~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~ 465 (475)
+++.+|+|+.+++.||.|++|.+...|+||+||.+|.|+.|.++.+.+..+...+.++++.... ++++..+++...+..
T Consensus 491 D~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~~d~~~i~~~e~~~~~~ 570 (620)
T KOG0350|consen 491 DALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNLWDGVEIQPIEYIFIKD 570 (620)
T ss_pred hhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcccCCcceeecCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998877 788888887776655
Q ss_pred hhccc
Q 011884 466 LRPVY 470 (475)
Q Consensus 466 ~~~~~ 470 (475)
..+.|
T Consensus 571 ~~~~Y 575 (620)
T KOG0350|consen 571 EDDRY 575 (620)
T ss_pred HHHHH
Confidence 54444
No 6
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.8e-50 Score=412.12 Aligned_cols=362 Identities=26% Similarity=0.414 Sum_probs=290.0
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh------ccccceEEEcccHHHHHHHhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQVNS 74 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~------~~~~~vlil~Pt~~L~~q~~~ 74 (475)
+||..|+|+|.+++..++ +|+|++++||||||||++|++++++.+.... ..++++||++||++|+.|+
T Consensus 27 ~g~~~ptpiQ~~~ip~~l----~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi-- 100 (572)
T PRK04537 27 AGFTRCTPIQALTLPVAL----PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQI-- 100 (572)
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHH--
Confidence 589999999999877655 5999999999999999999999998875421 1246899999999999995
Q ss_pred hhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccC
Q 011884 75 ARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 154 (475)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (475)
.+.+..+....++++..++|+.....+...
T Consensus 101 -------------------------------------~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~------------- 130 (572)
T PRK04537 101 -------------------------------------HKDAVKFGADLGLRFALVYGGVDYDKQREL------------- 130 (572)
T ss_pred -------------------------------------HHHHHHHhccCCceEEEEECCCCHHHHHHH-------------
Confidence 444566666678899999999876555332
Q ss_pred CchhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccc
Q 011884 155 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 234 (475)
Q Consensus 155 ~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 234 (475)
+..+++|+|+||++|++++.....+.+..+++||+||||++++.++...+..++..+....
T Consensus 131 --------l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~----------- 191 (572)
T PRK04537 131 --------LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERG----------- 191 (572)
T ss_pred --------HhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhccccc-----------
Confidence 2345799999999999998775556788999999999999999888888888887654311
Q ss_pred ccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcH
Q 011884 235 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 314 (475)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (475)
..+.+++|||++..+..+....+..+..+...... .....+.+.........+.
T Consensus 192 -------------------------~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~ 245 (572)
T PRK04537 192 -------------------------TRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQ 245 (572)
T ss_pred -------------------------CceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHH
Confidence 12679999999988777776666665443332221 1222333333444455677
Q ss_pred HHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCC
Q 011884 315 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 394 (475)
Q Consensus 315 ~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiD 394 (475)
..+..++....+.++||||+++..++.+++.|.+.+ +.+..+||+|+..+|.++++.|++|+.+|||||+++++|||
T Consensus 246 ~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g---~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGID 322 (572)
T PRK04537 246 TLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHG---YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLH 322 (572)
T ss_pred HHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcC---CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCC
Confidence 778888877778899999999999999999998766 89999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCCCCCccCCChhhhhhhh
Q 011884 395 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLR 467 (475)
Q Consensus 395 ip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
+|++++||+++.|.++..|+||+||+||.|..|.+++|+...+...++++.+.+... .+..+++..++..+.
T Consensus 323 ip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~-~~~~~~~~~~~~~~~ 394 (572)
T PRK04537 323 IDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK-IPVEPVTAELLTPLP 394 (572)
T ss_pred ccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC-CCccccChhhccccc
Confidence 999999999999999999999999999999999999999999999999997776533 344444544444333
No 7
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=7.8e-50 Score=407.34 Aligned_cols=341 Identities=27% Similarity=0.404 Sum_probs=286.0
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||..|+|+|.+|++.++ +|++++++||||||||++|++|++..+... ....++||++||++|+.|+++++
T Consensus 22 ~g~~~~t~iQ~~ai~~~l----~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-~~~~~~lil~PtreLa~Q~~~~~---- 92 (460)
T PRK11776 22 LGYTEMTPIQAQSLPAIL----AGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-RFRVQALVLCPTRELADQVAKEI---- 92 (460)
T ss_pred CCCCCCCHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHhhhc-cCCceEEEEeCCHHHHHHHHHHH----
Confidence 689999999999987665 489999999999999999999999987643 23457999999999999965543
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhccc-ccceEeEccCCCchHHHHHHHhhccccccCccCCchhH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPA-VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 159 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
..+... .+.++..++|+.+...+...+
T Consensus 93 -----------------------------------~~~~~~~~~~~v~~~~Gg~~~~~~~~~l----------------- 120 (460)
T PRK11776 93 -----------------------------------RRLARFIPNIKVLTLCGGVPMGPQIDSL----------------- 120 (460)
T ss_pred -----------------------------------HHHHhhCCCcEEEEEECCCChHHHHHHh-----------------
Confidence 333322 267888899998876665433
Q ss_pred HHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccc
Q 011884 160 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 239 (475)
Q Consensus 160 ~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 239 (475)
..+++|+|+||+.+.+++... ...+++++++|+||||++.+.++...+..++..+..
T Consensus 121 ----~~~~~IvV~Tp~rl~~~l~~~-~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~------------------ 177 (460)
T PRK11776 121 ----EHGAHIIVGTPGRILDHLRKG-TLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPA------------------ 177 (460)
T ss_pred ----cCCCCEEEEChHHHHHHHHcC-CccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCc------------------
Confidence 346799999999999998863 367889999999999999988888888888876643
Q ss_pred cchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHH
Q 011884 240 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA 319 (475)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 319 (475)
..+.+++|||+++....+....+.++..+...... ....+.+.+.......+...+..
T Consensus 178 --------------------~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ 235 (460)
T PRK11776 178 --------------------RRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQR 235 (460)
T ss_pred --------------------ccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHH
Confidence 23679999999988888888777777766554332 12234455555566668888888
Q ss_pred HHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCc
Q 011884 320 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 399 (475)
Q Consensus 320 ~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~ 399 (475)
++.....+++||||+++..++.+++.|.+.+ ..+..+||+|++.+|+++++.|++|+.++||||+++++|+|+|+++
T Consensus 236 ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~---~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~ 312 (460)
T PRK11776 236 LLLHHQPESCVVFCNTKKECQEVADALNAQG---FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALE 312 (460)
T ss_pred HHHhcCCCceEEEECCHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCC
Confidence 8888778899999999999999999999876 8899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcC
Q 011884 400 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 450 (475)
Q Consensus 400 ~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~ 450 (475)
+||+++.|.++..|+||+||+||.|..|.+++++..++...++.+.+..+.
T Consensus 313 ~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 313 AVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred eEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999998888776654
No 8
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.5e-49 Score=408.46 Aligned_cols=355 Identities=26% Similarity=0.443 Sum_probs=287.0
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhh------hccccceEEEcccHHHHHHHhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR------AVRCLRALVVLPTRDLALQVNS 74 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~------~~~~~~vlil~Pt~~L~~q~~~ 74 (475)
+||..|+|+|.+|+..++ +|++++++||||||||++|++|++..+... ...++++||++||++|+.|+
T Consensus 139 ~g~~~ptpiQ~~aip~il----~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi-- 212 (518)
T PLN00206 139 AGYEFPTPIQMQAIPAAL----SGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQV-- 212 (518)
T ss_pred cCCCCCCHHHHHHHHHHh----cCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHH--
Confidence 589999999999987665 589999999999999999999998876532 12457899999999999994
Q ss_pred hhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccC
Q 011884 75 ARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 154 (475)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (475)
.+.++.+....++++...+|+.....+..
T Consensus 213 -------------------------------------~~~~~~l~~~~~~~~~~~~gG~~~~~q~~-------------- 241 (518)
T PLN00206 213 -------------------------------------EDQAKVLGKGLPFKTALVVGGDAMPQQLY-------------- 241 (518)
T ss_pred -------------------------------------HHHHHHHhCCCCceEEEEECCcchHHHHH--------------
Confidence 44455566666778888888876554433
Q ss_pred CchhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccc
Q 011884 155 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 234 (475)
Q Consensus 155 ~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 234 (475)
.+..+++|+|+||++|.+++... ...++++++||+||||++++.++...+..++..+.
T Consensus 242 -------~l~~~~~IiV~TPgrL~~~l~~~-~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-------------- 299 (518)
T PLN00206 242 -------RIQQGVELIVGTPGRLIDLLSKH-DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-------------- 299 (518)
T ss_pred -------HhcCCCCEEEECHHHHHHHHHcC-CccchheeEEEeecHHHHhhcchHHHHHHHHHhCC--------------
Confidence 23346799999999999998875 47789999999999999999888888777776542
Q ss_pred ccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcH
Q 011884 235 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 314 (475)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (475)
..+.+++|||+++....+......++..+....... ....+.+.........+.
T Consensus 300 -------------------------~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~-~~~~v~q~~~~~~~~~k~ 353 (518)
T PLN00206 300 -------------------------QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNR-PNKAVKQLAIWVETKQKK 353 (518)
T ss_pred -------------------------CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCC-CCcceeEEEEeccchhHH
Confidence 237899999999888877777777776655543321 222333444444555566
Q ss_pred HHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccC
Q 011884 315 LYLVALLQSLG--EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 392 (475)
Q Consensus 315 ~~l~~~l~~~~--~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~G 392 (475)
..+.+++.... ..++||||+++..++.+++.|... .+..+..+||+|+..+|.++++.|++|+.+|||||+++++|
T Consensus 354 ~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~--~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rG 431 (518)
T PLN00206 354 QKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV--TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRG 431 (518)
T ss_pred HHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc--cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhcc
Confidence 67777776442 358999999999999999999763 23788999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCCCCCccCCChhhhhh
Q 011884 393 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIES 465 (475)
Q Consensus 393 iDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 465 (475)
+|+|++++||+++.|.++.+|+||+||+||.|..|.+++|++.++...+.++.+.++.+. ..+|+.+.++
T Consensus 432 iDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~---~~vp~~l~~~ 501 (518)
T PLN00206 432 VDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSG---AAIPRELANS 501 (518)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcC---CCCCHHHHhC
Confidence 999999999999999999999999999999999999999999999999998888887654 4577776554
No 9
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-49 Score=406.76 Aligned_cols=345 Identities=32% Similarity=0.519 Sum_probs=301.0
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccc-eEEEcccHHHHHHHhhhhhcc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-ALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~-vlil~Pt~~L~~q~~~~~~~~ 79 (475)
+||..|+|.|.+++..+ +.|+|++.+|+||||||++|.+|+++.+......... +||++|||+||.|
T Consensus 47 ~gf~~pt~IQ~~~IP~~----l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Q-------- 114 (513)
T COG0513 47 LGFEEPTPIQLAAIPLI----LAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQ-------- 114 (513)
T ss_pred cCCCCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHH--------
Confidence 58999999999976554 4589999999999999999999999997742112212 9999999999999
Q ss_pred cccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccc-cceEeEccCCCchHHHHHHHhhccccccCccCCchh
Q 011884 80 CCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 158 (475)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
+.+.+..+.... ++++.+++||.+...+...+
T Consensus 115 -------------------------------i~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l---------------- 147 (513)
T COG0513 115 -------------------------------IAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL---------------- 147 (513)
T ss_pred -------------------------------HHHHHHHHHhhcCCccEEEEECCCCHHHHHHHH----------------
Confidence 555566666666 78899999998877776443
Q ss_pred HHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccc
Q 011884 159 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238 (475)
Q Consensus 159 ~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
..+++|+|+||+++++++... .+.++.+.++|+|||+++++.+|...++.|+..++.
T Consensus 148 -----~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~----------------- 204 (513)
T COG0513 148 -----KRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPP----------------- 204 (513)
T ss_pred -----hcCCCEEEECccHHHHHHHcC-CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCc-----------------
Confidence 335799999999999999986 588999999999999999999999999999988764
Q ss_pred ccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCcc-ccCCchhhhhhhhhccCCC-cHHH
Q 011884 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKL-KPLY 316 (475)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~ 316 (475)
..|.+++|||++..+..+....+.+|..+..... .......+.+.+..+.... |...
T Consensus 205 ---------------------~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~ 263 (513)
T COG0513 205 ---------------------DRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLEL 263 (513)
T ss_pred ---------------------ccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHH
Confidence 2378999999999988899999999886666522 2235677788888887765 9999
Q ss_pred HHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCC
Q 011884 317 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 396 (475)
Q Consensus 317 l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip 396 (475)
|..++......++||||+|+..++.++..|...+ +++..+||++++.+|.+.++.|++|+.+|||||++.++|+|+|
T Consensus 264 L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g---~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~ 340 (513)
T COG0513 264 LLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRG---FKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIP 340 (513)
T ss_pred HHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCC---CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcc
Confidence 9999998888899999999999999999999887 8999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeech-hHHHHHHHHHHhcCC
Q 011884 397 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVKRFKKLLQKADND 451 (475)
Q Consensus 397 ~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~l~~~~~~~ 451 (475)
++++||+|++|.++..|+||+||+||.|..|.++.|+... +...++.+.+.++..
T Consensus 341 ~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 341 DVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred ccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999875 999999998887654
No 10
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-50 Score=378.19 Aligned_cols=360 Identities=35% Similarity=0.590 Sum_probs=311.2
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhc--cccceEEEcccHHHHHHHhhhhhc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~--~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
+||..|+|.|... ++..+-|+|++.||.||||||.+|++|++..+..... ...+|||++|||+|+.|
T Consensus 199 lGy~~PTpIQ~a~----IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQ------- 267 (691)
T KOG0338|consen 199 LGYKKPTPIQVAT----IPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQ------- 267 (691)
T ss_pred cCCCCCCchhhhc----ccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHH-------
Confidence 6999999999875 5555669999999999999999999999999876532 34589999999999999
Q ss_pred ccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchh
Q 011884 79 YCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 158 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
+....+.++.++.+.+++.+||.+...+...+
T Consensus 268 --------------------------------v~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~L---------------- 299 (691)
T KOG0338|consen 268 --------------------------------VHSVTKQLAQFTDITVGLAVGGLDLKAQEAVL---------------- 299 (691)
T ss_pred --------------------------------HHHHHHHHHhhccceeeeeecCccHHHHHHHH----------------
Confidence 67778888888999999999999887776544
Q ss_pred HHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccc
Q 011884 159 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238 (475)
Q Consensus 159 ~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
...|+|+|+||++|.+++++...+.++++.++|+|||+++++.+|...++.|++....
T Consensus 300 -----Rs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk----------------- 357 (691)
T KOG0338|consen 300 -----RSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPK----------------- 357 (691)
T ss_pred -----hhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccc-----------------
Confidence 4467999999999999999988999999999999999999999999999999998766
Q ss_pred ccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhcc---CCCcHH
Q 011884 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE---SKLKPL 315 (475)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 315 (475)
..|.+++|||++..+.+++...++.|+.+-..++... .-.+.+.++... ...+..
T Consensus 358 ---------------------~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~-a~~LtQEFiRIR~~re~dRea 415 (691)
T KOG0338|consen 358 ---------------------NRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDT-APKLTQEFIRIRPKREGDREA 415 (691)
T ss_pred ---------------------cccceeehhhhHHHHHHHHHhhcCCCeEEEeCCcccc-chhhhHHHheeccccccccHH
Confidence 3378999999999999999999999988776665433 344455554443 446888
Q ss_pred HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCC
Q 011884 316 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 395 (475)
Q Consensus 316 ~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDi 395 (475)
.+..++...-..+++||+.|+..|+++.=+|--.+ .++.-+||.+++.+|.+.+++|+++++++||||++.++|+||
T Consensus 416 ~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlg---l~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI 492 (691)
T KOG0338|consen 416 MLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLG---LKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDI 492 (691)
T ss_pred HHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhh---chhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCc
Confidence 89998887778899999999999999988887555 899999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHh--cCCCCCccCCChhhhhhh
Q 011884 396 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA--DNDSCPIHSIPSSLIESL 466 (475)
Q Consensus 396 p~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~ 466 (475)
+++..||+|..|.+...|+||+||..|.|+.|.++.++-..+.+.++.+.+.. .++....--+|+..++..
T Consensus 493 ~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~Iek~ 565 (691)
T KOG0338|consen 493 EGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEVIEKF 565 (691)
T ss_pred cceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999885 333333344555555443
No 11
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.6e-49 Score=403.34 Aligned_cols=344 Identities=31% Similarity=0.485 Sum_probs=280.2
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhc-----cccceEEEcccHHHHHHHhhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-----RCLRALVVLPTRDLALQVNSA 75 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~-----~~~~vlil~Pt~~L~~q~~~~ 75 (475)
+||..|+|+|.+|++.++ ++++++++||||||||++|++|+++.+..... ...++||++||++||.|+
T Consensus 19 ~g~~~pt~iQ~~ai~~il----~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi--- 91 (456)
T PRK10590 19 QGYREPTPIQQQAIPAVL----EGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQI--- 91 (456)
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHH---
Confidence 689999999999877655 48999999999999999999999998865321 234799999999999994
Q ss_pred hhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCC
Q 011884 76 RCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 155 (475)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (475)
.+.+..+....++.+..++|+.+...+...
T Consensus 92 ------------------------------------~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~-------------- 121 (456)
T PRK10590 92 ------------------------------------GENVRDYSKYLNIRSLVVFGGVSINPQMMK-------------- 121 (456)
T ss_pred ------------------------------------HHHHHHHhccCCCEEEEEECCcCHHHHHHH--------------
Confidence 444555566667888888998876655433
Q ss_pred chhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccc
Q 011884 156 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 235 (475)
Q Consensus 156 ~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~ 235 (475)
+..+++|+|+||++|++++... ...++++++||+||||++++.++...+..++..+..
T Consensus 122 -------l~~~~~IiV~TP~rL~~~~~~~-~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~-------------- 179 (456)
T PRK10590 122 -------LRGGVDVLVATPGRLLDLEHQN-AVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPA-------------- 179 (456)
T ss_pred -------HcCCCcEEEEChHHHHHHHHcC-CcccccceEEEeecHHHHhccccHHHHHHHHHhCCc--------------
Confidence 2345799999999999988763 467899999999999999988887777777765432
Q ss_pred cccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHH
Q 011884 236 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL 315 (475)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (475)
..+.+++|||++.....+....+.++..+...... .....+.+.....+...+..
T Consensus 180 ------------------------~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~ 234 (456)
T PRK10590 180 ------------------------KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRE 234 (456)
T ss_pred ------------------------cCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHH
Confidence 23679999999987777777666666554433221 12223333444444455666
Q ss_pred HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCC
Q 011884 316 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 395 (475)
Q Consensus 316 ~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDi 395 (475)
.+..++......++||||+++..++.+++.|...+ +.+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+
T Consensus 235 ~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g---~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDi 311 (456)
T PRK10590 235 LLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311 (456)
T ss_pred HHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCC---CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCc
Confidence 77777776667899999999999999999998766 889999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCC
Q 011884 396 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 451 (475)
Q Consensus 396 p~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 451 (475)
|++++||++++|.++.+|+||+||+||.|..|.+++++..+|...++.+++.+...
T Consensus 312 p~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 312 EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred ccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999988876643
No 12
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-48 Score=399.21 Aligned_cols=347 Identities=29% Similarity=0.423 Sum_probs=282.2
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhc------cccceEEEcccHHHHHHHhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV------RCLRALVVLPTRDLALQVNS 74 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~------~~~~vlil~Pt~~L~~q~~~ 74 (475)
+||.+|+++|.+|++.++ +|+|+++.+|||||||++|++++++.+.+... ..+++||++||++|+.|
T Consensus 105 ~g~~~~~~iQ~~ai~~~~----~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q--- 177 (475)
T PRK01297 105 LGFPYCTPIQAQVLGYTL----AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQ--- 177 (475)
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHH---
Confidence 699999999999887655 48999999999999999999999998865421 14689999999999999
Q ss_pred hhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccC
Q 011884 75 ARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 154 (475)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (475)
+.+.+..+....++.+..++|+.....+...+.
T Consensus 178 ------------------------------------~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~----------- 210 (475)
T PRK01297 178 ------------------------------------IAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE----------- 210 (475)
T ss_pred ------------------------------------HHHHHHHhhccCCCEEEEEEccCChHHHHHHHh-----------
Confidence 455556666667888999999876655543322
Q ss_pred CchhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccc
Q 011884 155 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 234 (475)
Q Consensus 155 ~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 234 (475)
...++|+|+||++|+.++... ...++++++|||||+|++.+.++...+..+++......
T Consensus 211 ---------~~~~~Iiv~TP~~Ll~~~~~~-~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~----------- 269 (475)
T PRK01297 211 ---------ARFCDILVATPGRLLDFNQRG-EVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKE----------- 269 (475)
T ss_pred ---------CCCCCEEEECHHHHHHHHHcC-CcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCC-----------
Confidence 235799999999999887763 46788999999999999988887777777776543211
Q ss_pred ccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcH
Q 011884 235 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 314 (475)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (475)
..+.+++|||++.+...+....+.++..+....... ....+.+.........+.
T Consensus 270 -------------------------~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~k~ 323 (475)
T PRK01297 270 -------------------------ERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENV-ASDTVEQHVYAVAGSDKY 323 (475)
T ss_pred -------------------------CceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcC-CCCcccEEEEEecchhHH
Confidence 226899999998887777777777766554433221 122233333444455677
Q ss_pred HHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCC
Q 011884 315 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 394 (475)
Q Consensus 315 ~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiD 394 (475)
..+..++......++||||+++..++.+++.|...+ +.+..+||+++..+|.++++.|++|+.++||||+++++|||
T Consensus 324 ~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GID 400 (475)
T PRK01297 324 KLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDG---INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIH 400 (475)
T ss_pred HHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCc
Confidence 778888887777899999999999999999998765 78899999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCC
Q 011884 395 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 451 (475)
Q Consensus 395 ip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 451 (475)
+|++++||+++.|.|+..|+||+||+||.|++|.+++|+.++|...+..+.+.+...
T Consensus 401 i~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~ 457 (475)
T PRK01297 401 IDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRK 457 (475)
T ss_pred ccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999988888888777644
No 13
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.1e-49 Score=398.94 Aligned_cols=342 Identities=29% Similarity=0.455 Sum_probs=277.0
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh---ccccceEEEcccHHHHHHHhhhhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVNSARC 77 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~---~~~~~vlil~Pt~~L~~q~~~~~~ 77 (475)
+||..|+++|.+|+..++. +++++++||||+|||++|++|+++.+.... ....++||++||++|+.|
T Consensus 19 ~g~~~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q------ 88 (434)
T PRK11192 19 KGYTRPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQ------ 88 (434)
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHH------
Confidence 6899999999999877664 889999999999999999999998876421 123589999999999999
Q ss_pred cccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCch
Q 011884 78 KYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 157 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (475)
+.+.+..+....++++..++|+.........
T Consensus 89 ---------------------------------~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---------------- 119 (434)
T PRK11192 89 ---------------------------------VADQARELAKHTHLDIATITGGVAYMNHAEV---------------- 119 (434)
T ss_pred ---------------------------------HHHHHHHHHccCCcEEEEEECCCCHHHHHHH----------------
Confidence 5555666667778899999998876555432
Q ss_pred hHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccc
Q 011884 158 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 158 ~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
+..+++|+|+||++|++++... .+.+.++++||+||||++++.++...+..+...+..
T Consensus 120 -----l~~~~~IlV~Tp~rl~~~~~~~-~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~---------------- 177 (434)
T PRK11192 120 -----FSENQDIVVATPGRLLQYIKEE-NFDCRAVETLILDEADRMLDMGFAQDIETIAAETRW---------------- 177 (434)
T ss_pred -----hcCCCCEEEEChHHHHHHHHcC-CcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCcc----------------
Confidence 2345799999999999988764 377889999999999999988888877777655432
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccC-ccccccccccCceeeecCccccCCchhhhhhhhhcc-CCCcHH
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD-PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPL 315 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 315 (475)
..+.+++|||++.. ...+....+.++..+....... ....+.+.....+ ...+..
T Consensus 178 ----------------------~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~~k~~ 234 (434)
T PRK11192 178 ----------------------RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRR-ERKKIHQWYYRADDLEHKTA 234 (434)
T ss_pred ----------------------ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcc-cccCceEEEEEeCCHHHHHH
Confidence 22679999999753 4555555556665544333221 2222333333232 345677
Q ss_pred HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCC
Q 011884 316 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 395 (475)
Q Consensus 316 ~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDi 395 (475)
.+..++.....+++||||++++.++.++..|++.+ +.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+
T Consensus 235 ~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~---~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDi 311 (434)
T PRK11192 235 LLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAG---INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDI 311 (434)
T ss_pred HHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCC---CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccC
Confidence 77787776677899999999999999999999765 889999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhc
Q 011884 396 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 449 (475)
Q Consensus 396 p~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~ 449 (475)
|++++||+++.|.+...|+||+||+||.|..|.++++++..|...++.+.+.+.
T Consensus 312 p~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 312 DDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred CCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988876554
No 14
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=9.5e-49 Score=406.88 Aligned_cols=342 Identities=27% Similarity=0.431 Sum_probs=282.7
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+|+|.+++..++ .+++++++||||||||++|.+|+++.+... ..++++||++||++|+.|+++++
T Consensus 24 ~G~~~ptpiQ~~ai~~ll----~g~dvl~~ApTGsGKT~af~lpll~~l~~~-~~~~~~LIL~PTreLa~Qv~~~l---- 94 (629)
T PRK11634 24 LGYEKPSPIQAECIPHLL----NGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-LKAPQILVLAPTRELAVQVAEAM---- 94 (629)
T ss_pred CCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-cCCCeEEEEeCcHHHHHHHHHHH----
Confidence 699999999999877654 489999999999999999999999887653 34568999999999999965543
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhccc-ccceEeEccCCCchHHHHHHHhhccccccCccCCchhH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPA-VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 159 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
..+... .++.+..++|+.+...+...
T Consensus 95 -----------------------------------~~~~~~~~~i~v~~~~gG~~~~~q~~~------------------ 121 (629)
T PRK11634 95 -----------------------------------TDFSKHMRGVNVVALYGGQRYDVQLRA------------------ 121 (629)
T ss_pred -----------------------------------HHHHhhcCCceEEEEECCcCHHHHHHH------------------
Confidence 333322 36788888888766555433
Q ss_pred HHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccc
Q 011884 160 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 239 (475)
Q Consensus 160 ~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 239 (475)
+..+++|+|+||+++++++... .+.++++++||+||||++++.++...+..++..+..
T Consensus 122 ---l~~~~~IVVgTPgrl~d~l~r~-~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~------------------ 179 (629)
T PRK11634 122 ---LRQGPQIVVGTPGRLLDHLKRG-TLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE------------------ 179 (629)
T ss_pred ---hcCCCCEEEECHHHHHHHHHcC-CcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCC------------------
Confidence 2346799999999999998863 377899999999999999999988888888876543
Q ss_pred cchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHH
Q 011884 240 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA 319 (475)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 319 (475)
..+.+++|||++..+..+....+.++..+......... ..+.+.+.......+...+..
T Consensus 180 --------------------~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~-~~i~q~~~~v~~~~k~~~L~~ 238 (629)
T PRK11634 180 --------------------GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTR-PDISQSYWTVWGMRKNEALVR 238 (629)
T ss_pred --------------------CCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccC-CceEEEEEEechhhHHHHHHH
Confidence 23679999999988888887777777655444332222 223333444445567788888
Q ss_pred HHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCc
Q 011884 320 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 399 (475)
Q Consensus 320 ~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~ 399 (475)
++......++||||+++..++.+++.|...+ +.+..+||+|++.+|.++++.|++|+.+|||||+++++|||+|+++
T Consensus 239 ~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g---~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~ 315 (629)
T PRK11634 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNG---YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS 315 (629)
T ss_pred HHHhcCCCCEEEEeccHHHHHHHHHHHHhCC---CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCC
Confidence 8887777899999999999999999999876 8899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcC
Q 011884 400 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 450 (475)
Q Consensus 400 ~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~ 450 (475)
+||+++.|.+...|+||+||+||.|+.|.++++++..+...++.+.+....
T Consensus 316 ~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~ 366 (629)
T PRK11634 316 LVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 (629)
T ss_pred EEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999998888888776553
No 15
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-49 Score=349.71 Aligned_cols=342 Identities=24% Similarity=0.423 Sum_probs=303.1
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+..|.+|+ ..+.+|++++.+|..|+|||.++.+.+++.+.-. .+...+++++|||+|+.|
T Consensus 45 yGfekPS~IQqrAi----~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-~r~tQ~lilsPTRELa~Q--------- 110 (400)
T KOG0328|consen 45 YGFEKPSAIQQRAI----PQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-VRETQALILSPTRELAVQ--------- 110 (400)
T ss_pred hccCCchHHHhhhh----hhhhcccceEEEecCCCCceEEEEeeeeeecccc-cceeeEEEecChHHHHHH---------
Confidence 69999999998874 5566699999999999999999988888776554 355679999999999999
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
+.+....++...++.+....||.+..+++..+
T Consensus 111 ------------------------------i~~vi~alg~~mnvq~hacigg~n~gedikkl------------------ 142 (400)
T KOG0328|consen 111 ------------------------------IQKVILALGDYMNVQCHACIGGKNLGEDIKKL------------------ 142 (400)
T ss_pred ------------------------------HHHHHHHhcccccceEEEEecCCccchhhhhh------------------
Confidence 77778888899999999999999887776543
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
..+.+++.+||++.++.++... +.-..+.++|+||++.+++.++..++-.+++.++.
T Consensus 143 ---d~G~hvVsGtPGrv~dmikr~~-L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~------------------- 199 (400)
T KOG0328|consen 143 ---DYGQHVVSGTPGRVLDMIKRRS-LRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPP------------------- 199 (400)
T ss_pred ---cccceEeeCCCchHHHHHHhcc-ccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCC-------------------
Confidence 3567999999999999988744 77788999999999999999999999999988764
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCC-CcHHHHHH
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK-LKPLYLVA 319 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 319 (475)
..|.+++|||++..+.+....++.+|..+....... .-+.+++++..++.+ .|...|.+
T Consensus 200 -------------------~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdel-tlEgIKqf~v~ve~EewKfdtLcd 259 (400)
T KOG0328|consen 200 -------------------GAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDEL-TLEGIKQFFVAVEKEEWKFDTLCD 259 (400)
T ss_pred -------------------CceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCC-chhhhhhheeeechhhhhHhHHHH
Confidence 458899999999999999999999988766555443 336677777777655 59999999
Q ss_pred HHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCc
Q 011884 320 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 399 (475)
Q Consensus 320 ~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~ 399 (475)
+.....-.+++|||+|+.....+.+.+++.. ..+..+||+|+++||.++++.|+.|+.+||++|+++++|+|+|.++
T Consensus 260 LYd~LtItQavIFcnTk~kVdwLtekm~~~n---ftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVs 336 (400)
T KOG0328|consen 260 LYDTLTITQAVIFCNTKRKVDWLTEKMREAN---FTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVS 336 (400)
T ss_pred HhhhhehheEEEEecccchhhHHHHHHHhhC---ceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeE
Confidence 9988878899999999999999999999866 8999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcC
Q 011884 400 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 450 (475)
Q Consensus 400 ~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~ 450 (475)
+||.|++|.+...|+||+||.||.|+.|.++-|+..+|.+.++.+++.+.-
T Consensus 337 lviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst 387 (400)
T KOG0328|consen 337 LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYST 387 (400)
T ss_pred EEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998863
No 16
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-48 Score=366.32 Aligned_cols=345 Identities=33% Similarity=0.514 Sum_probs=294.1
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhcc--c--cceEEEcccHHHHHHHhhhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--C--LRALVVLPTRDLALQVNSAR 76 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~--~--~~vlil~Pt~~L~~q~~~~~ 76 (475)
+||.+.+|.|..+ ++.+.+++|+++.|+||||||++|++|++..+.....+ . .-+||++|||+|+.|+..
T Consensus 24 ~GF~~mTpVQa~t----IPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~-- 97 (567)
T KOG0345|consen 24 SGFEKMTPVQAAT----IPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIRE-- 97 (567)
T ss_pred cCCcccCHHHHhh----hHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHH--
Confidence 5999999999886 55566699999999999999999999999998433221 1 248999999999999644
Q ss_pred hcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcc-cccceEeEccCCCchHHHHHHHhhccccccCccCC
Q 011884 77 CKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAP-AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 155 (475)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (475)
....+.. ..+++..+++||....++...+..
T Consensus 98 -------------------------------------V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fke----------- 129 (567)
T KOG0345|consen 98 -------------------------------------VAQPFLEHLPNLNCELLVGGRSVEEDIKTFKE----------- 129 (567)
T ss_pred -------------------------------------HHHHHHHhhhccceEEEecCccHHHHHHHHHH-----------
Confidence 3333322 257899999999888777766544
Q ss_pred chhHHHhhhcCCcEEEeCchHHHHHhhcCC-CcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccc
Q 011884 156 PEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 234 (475)
Q Consensus 156 ~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~-~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 234 (475)
.+++|+|+||++|.+.+.... .+...+++++|+||||++++.+|...+++|++.++...
T Consensus 130 ---------e~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQR----------- 189 (567)
T KOG0345|consen 130 ---------EGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQR----------- 189 (567)
T ss_pred ---------hCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhccccc-----------
Confidence 468999999999999998733 35566999999999999999999999999999987622
Q ss_pred ccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCcccc-CCchhhhhhhhhccCCCc
Q 011884 235 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY-KLPERLESYKLICESKLK 313 (475)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 313 (475)
+.-++|||......++...++++|..+.+..... ..|..+...+..+.+..|
T Consensus 190 ---------------------------RTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 190 ---------------------------RTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ---------------------------ccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 5678999999999999999999999877766543 367778888999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCC
Q 011884 314 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 393 (475)
Q Consensus 314 ~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~Gi 393 (475)
...+.+++.....+++|||++|=...+.+...+... .....+..+||.|+...|..+++.|.+..-.+|+||+++++|+
T Consensus 243 ~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~-l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 243 LSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRL-LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHHHhccccccEEEEecCcchHHHHHHHHHHH-hCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 999999999998999999999999999999999886 2347899999999999999999999998889999999999999
Q ss_pred CCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHh
Q 011884 394 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 448 (475)
Q Consensus 394 Dip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~ 448 (475)
|+|+++.||++++|.++..|+||+||++|.|+.|.+++|+.+++. .+-++++--
T Consensus 322 Dip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~-aYveFl~i~ 375 (567)
T KOG0345|consen 322 DIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREE-AYVEFLRIK 375 (567)
T ss_pred CCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHH-HHHHHHHhc
Confidence 999999999999999999999999999999999999999988544 444454443
No 17
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=8.5e-48 Score=387.08 Aligned_cols=343 Identities=24% Similarity=0.416 Sum_probs=270.6
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||..|+|+|.+|++.++ ++++++++||||||||++|+++++..+... ..+.++||++||++|+.|+
T Consensus 46 ~~~~~~~~~Q~~ai~~i~----~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-~~~~~~lil~Pt~~L~~Q~-------- 112 (401)
T PTZ00424 46 YGFEKPSAIQQRGIKPIL----DGYDTIGQAQSGTGKTATFVIAALQLIDYD-LNACQALILAPTRELAQQI-------- 112 (401)
T ss_pred cCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhcCC-CCCceEEEECCCHHHHHHH--------
Confidence 589999999999887665 488999999999999999999998877543 2456899999999999994
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.+.+..+....+..+...+|+.....+...
T Consensus 113 -------------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------------- 142 (401)
T PTZ00424 113 -------------------------------QKVVLALGDYLKVRCHACVGGTVVRDDINK------------------- 142 (401)
T ss_pred -------------------------------HHHHHHHhhhcCceEEEEECCcCHHHHHHH-------------------
Confidence 444555555556677777777665544332
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
+..+++|+|+||+.+.+.+.... ..+++++++|+||+|++.+.++...+..++..+..
T Consensus 143 --~~~~~~Ivv~Tp~~l~~~l~~~~-~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~------------------- 200 (401)
T PTZ00424 143 --LKAGVHMVVGTPGRVYDMIDKRH-LRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPP------------------- 200 (401)
T ss_pred --HcCCCCEEEECcHHHHHHHHhCC-cccccccEEEEecHHHHHhcchHHHHHHHHhhCCC-------------------
Confidence 23356999999999998887643 67889999999999999887777666666654422
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhcc-CCCcHHHHHH
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVA 319 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 319 (475)
..+.+++|||+++....+....+..+........... ...+.+...... ...+...+..
T Consensus 201 -------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 260 (401)
T PTZ00424 201 -------------------DVQVALFSATMPNEILELTTKFMRDPKRILVKKDELT-LEGIRQFYVAVEKEEWKFDTLCD 260 (401)
T ss_pred -------------------CcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcc-cCCceEEEEecChHHHHHHHHHH
Confidence 3478999999988766666555555544332222111 122222222222 2234555666
Q ss_pred HHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCc
Q 011884 320 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 399 (475)
Q Consensus 320 ~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~ 399 (475)
++......++||||+++..++.+++.|.+.+ ..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 261 ~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~---~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~ 337 (401)
T PTZ00424 261 LYETLTITQAIIYCNTRRKVDYLTKKMHERD---FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVS 337 (401)
T ss_pred HHHhcCCCeEEEEecCcHHHHHHHHHHHHCC---CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCC
Confidence 6666667799999999999999999998765 8899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCC
Q 011884 400 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 451 (475)
Q Consensus 400 ~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 451 (475)
+||+++.|.|...|+||+||+||.|+.|.|+.++++++...++.+.+.....
T Consensus 338 ~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~ 389 (401)
T PTZ00424 338 LVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQ 389 (401)
T ss_pred EEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCc
Confidence 9999999999999999999999999999999999999999999998877643
No 18
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.1e-47 Score=363.78 Aligned_cols=340 Identities=32% Similarity=0.497 Sum_probs=294.7
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhc---cccceEEEcccHHHHHHHhhhhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPTRDLALQVNSARC 77 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~---~~~~vlil~Pt~~L~~q~~~~~~ 77 (475)
|||.++++.|... ++.++.|+|++..|.||||||++|++|+++.+..... .+-.++|+||||+||.|++.++
T Consensus 100 ~GF~~MT~VQ~~t----i~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~ea- 174 (543)
T KOG0342|consen 100 MGFETMTPVQQKT----IPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEA- 174 (543)
T ss_pred cCccchhHHHHhh----cCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHH-
Confidence 7999999999775 6677779999999999999999999999999876532 2346999999999999965554
Q ss_pred cccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccc-cceEeEccCCCchHHHHHHHhhccccccCccCCc
Q 011884 78 KYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 156 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (475)
+.+.... ...+..+.||+....+.+
T Consensus 175 --------------------------------------k~Ll~~h~~~~v~~viGG~~~~~e~~---------------- 200 (543)
T KOG0342|consen 175 --------------------------------------KELLKYHESITVGIVIGGNNFSVEAD---------------- 200 (543)
T ss_pred --------------------------------------HHHHhhCCCcceEEEeCCccchHHHH----------------
Confidence 3444444 678888999988776654
Q ss_pred hhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccc
Q 011884 157 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 236 (475)
Q Consensus 157 ~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~ 236 (475)
++..+++|+|+||++|.+++.+-..+...+.+++|+|||+++++.+|...++.|+..++.
T Consensus 201 -----kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk--------------- 260 (543)
T KOG0342|consen 201 -----KLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPK--------------- 260 (543)
T ss_pred -----HhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccc---------------
Confidence 344578999999999999999988777788899999999999999999999999998874
Q ss_pred ccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccC-ceeeecC-ccccCCchhhhhhhhhccCCCcH
Q 011884 237 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH-PLFLTTG-ETRYKLPERLESYKLICESKLKP 314 (475)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 314 (475)
..|..++|||.++.+.+++...+.. +.++... .......+.+.+.+..++...++
T Consensus 261 -----------------------~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f 317 (543)
T KOG0342|consen 261 -----------------------QRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF 317 (543)
T ss_pred -----------------------cceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH
Confidence 3378999999999999988877765 5544333 33445556777878888888889
Q ss_pred HHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCC
Q 011884 315 LYLVALLQSLGE-EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 393 (475)
Q Consensus 315 ~~l~~~l~~~~~-~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~Gi 393 (475)
..+..+++++.+ .+++|||+|-.....++..|+... +++..+||++++..|..+...|++.+..||+||++..+|+
T Consensus 318 ~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~d---lpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGl 394 (543)
T KOG0342|consen 318 SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYID---LPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGL 394 (543)
T ss_pred HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcC---CchhhhhcCCcccccchHHHHHhhcccceEEecchhhccC
Confidence 999999998866 899999999999999999999766 8999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHH
Q 011884 394 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 445 (475)
Q Consensus 394 Dip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~ 445 (475)
|+|+++.||++++|..+.+|+||+||.+|.|..|++++++.+.|...++.+.
T Consensus 395 D~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 395 DIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998887775
No 19
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2e-47 Score=363.74 Aligned_cols=361 Identities=29% Similarity=0.446 Sum_probs=303.9
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh--------ccccceEEEcccHHHHHHHh
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--------VRCLRALVVLPTRDLALQVN 73 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~--------~~~~~vlil~Pt~~L~~q~~ 73 (475)
||..|+|.|..| ++..++++|+|..|.||||||.+|++|++.++..-. ..++++++++|||+|+.|
T Consensus 264 ~y~eptpIqR~a----ipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqq-- 337 (673)
T KOG0333|consen 264 GYKEPTPIQRQA----IPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQ-- 337 (673)
T ss_pred CCCCCchHHHhh----ccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHH--
Confidence 788999999886 567778999999999999999999999988874322 357899999999999999
Q ss_pred hhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCcc
Q 011884 74 SARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 153 (475)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 153 (475)
+.+...+++..+++++..++|+.+..++--
T Consensus 338 -------------------------------------IeeEt~kf~~~lg~r~vsvigg~s~EEq~f------------- 367 (673)
T KOG0333|consen 338 -------------------------------------IEEETNKFGKPLGIRTVSVIGGLSFEEQGF------------- 367 (673)
T ss_pred -------------------------------------HHHHHHHhcccccceEEEEecccchhhhhh-------------
Confidence 666677788888999999999988766532
Q ss_pred CCchhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccc----
Q 011884 154 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD---- 229 (475)
Q Consensus 154 ~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~---- 229 (475)
.+..+|+|+|+||+.|.+.+.+.. +-++...++|+|||+++++.+|.+.+..++..++..+.....+
T Consensus 368 --------qls~gceiviatPgrLid~Lenr~-lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~ 438 (673)
T KOG0333|consen 368 --------QLSMGCEIVIATPGRLIDSLENRY-LVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEG 438 (673)
T ss_pred --------hhhccceeeecCchHHHHHHHHHH-HHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhh
Confidence 234578999999999999988755 6678899999999999999999999999999888755442211
Q ss_pred cccccccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhcc
Q 011884 230 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE 309 (475)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (475)
+...+.. +.+-+. ..+.+.+|||+++.+..++...+..|..+..+...... ..+.+.....+
T Consensus 439 ~~~~~~~-~~~~k~----------------yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~-~rveQ~v~m~~ 500 (673)
T KOG0333|consen 439 EERVRKN-FSSSKK----------------YRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPT-PRVEQKVEMVS 500 (673)
T ss_pred HHHHHhh-cccccc----------------eeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCc-cchheEEEEec
Confidence 1111111 111112 23789999999999999999999999988877665443 55666777777
Q ss_pred CCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCc
Q 011884 310 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 389 (475)
Q Consensus 310 ~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~ 389 (475)
...+...|.++++.....++|||+|++..|+.+++.|.+.+ +++..+||+.++++|+..+..|++|..+|||||++.
T Consensus 501 ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g---~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvA 577 (673)
T KOG0333|consen 501 EDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAG---YKVTTLHGGKSQEQRENALADFREGTGDILVATDVA 577 (673)
T ss_pred chHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhcc---ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 78889999999998877899999999999999999999887 999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHh
Q 011884 390 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 448 (475)
Q Consensus 390 ~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~ 448 (475)
++|||+|+|.+||+|+.++|+..|.||+||.||.|+.|.++.|++..+...++.|.+-+
T Consensus 578 gRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l 636 (673)
T KOG0333|consen 578 GRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQAL 636 (673)
T ss_pred ccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999977554444433
No 20
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-46 Score=358.95 Aligned_cols=342 Identities=31% Similarity=0.450 Sum_probs=305.9
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh---ccccceEEEcccHHHHHHHhhhhhc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~---~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
+|.+++..|.++ ++..+.|+++|-.|.||||||++|++|.++.+...+ .+|.-+|||+|||+||.|
T Consensus 88 ~fv~~teiQ~~~----Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~Q------- 156 (758)
T KOG0343|consen 88 KFVKMTEIQRDT----IPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQ------- 156 (758)
T ss_pred CCccHHHHHHhh----cchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHH-------
Confidence 577899999886 455566999999999999999999999999886532 356679999999999999
Q ss_pred ccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchh
Q 011884 79 YCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 158 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
.++.+.+++....++.+++.||.....+...
T Consensus 157 --------------------------------tFevL~kvgk~h~fSaGLiiGG~~~k~E~eR----------------- 187 (758)
T KOG0343|consen 157 --------------------------------TFEVLNKVGKHHDFSAGLIIGGKDVKFELER----------------- 187 (758)
T ss_pred --------------------------------HHHHHHHHhhccccccceeecCchhHHHHHh-----------------
Confidence 6777888899999999999999886665432
Q ss_pred HHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccc
Q 011884 159 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238 (475)
Q Consensus 159 ~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
....+|+||||++|+.+|.....+..+++.++|+|||+++++++|...++.|++.++.
T Consensus 188 -----i~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~----------------- 245 (758)
T KOG0343|consen 188 -----ISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPK----------------- 245 (758)
T ss_pred -----hhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCCh-----------------
Confidence 2346899999999999999888899999999999999999999999999999988765
Q ss_pred ccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCcc-ccCCchhhhhhhhhccCCCcHHHH
Q 011884 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYL 317 (475)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 317 (475)
..|.+++|||....+.+++++.+.+|.++.+..+ ....|..+.++++.++...|+..|
T Consensus 246 ---------------------~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L 304 (758)
T KOG0343|consen 246 ---------------------KRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDML 304 (758)
T ss_pred ---------------------hheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHH
Confidence 3378999999999999999999999999988844 488999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCC
Q 011884 318 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 397 (475)
Q Consensus 318 ~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~ 397 (475)
..++..+...++|||++|-.++..++..++... +++.+..+||+|++..|.++..+|...+.-||+||++.++|+|+|.
T Consensus 305 ~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlr-pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpa 383 (758)
T KOG0343|consen 305 WSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLR-PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPA 383 (758)
T ss_pred HHHHHhccccceEEEEehhhHHHHHHHHHHhcC-CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcc
Confidence 999999999999999999999999999999874 5689999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechh-HHHHHHHHHH
Q 011884 398 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE-VKRFKKLLQK 447 (475)
Q Consensus 398 ~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~-~~~~~~l~~~ 447 (475)
++.||.+++|.++.+|+||+||+.|.+..|.+.+++...+ ..++..+.++
T Consensus 384 VdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 384 VDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred cceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 9999999999999999999999999999999999998877 4455555444
No 21
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-46 Score=340.52 Aligned_cols=347 Identities=29% Similarity=0.442 Sum_probs=300.8
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
||+.+|+|.|..++. .++.|+|++=+|.||||||+++.+|+++.+..+ .-+..++|++|||+|+-|
T Consensus 25 l~i~~pTpiQ~~cIp----kILeGrdcig~AkTGsGKT~AFaLPil~rLsed-P~giFalvlTPTrELA~Q--------- 90 (442)
T KOG0340|consen 25 LGIKKPTPIQQACIP----KILEGRDCIGCAKTGSGKTAAFALPILNRLSED-PYGIFALVLTPTRELALQ--------- 90 (442)
T ss_pred hcCCCCCchHhhhhH----HHhcccccccccccCCCcchhhhHHHHHhhccC-CCcceEEEecchHHHHHH---------
Confidence 688999999988755 555599999999999999999999999998776 345679999999999999
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.++.|...+...++++.+++|+.....+...
T Consensus 91 ------------------------------iaEQF~alGk~l~lK~~vivGG~d~i~qa~~------------------- 121 (442)
T KOG0340|consen 91 ------------------------------IAEQFIALGKLLNLKVSVIVGGTDMIMQAAI------------------- 121 (442)
T ss_pred ------------------------------HHHHHHHhcccccceEEEEEccHHHhhhhhh-------------------
Confidence 7777888899999999999999877666443
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCC---CcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATR---GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~---~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
+..+||++|+||+++..++.+.. ...++++.++|+|||+.+++..|...++.+.+.++..
T Consensus 122 --L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~--------------- 184 (442)
T KOG0340|consen 122 --LSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKP--------------- 184 (442)
T ss_pred --cccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCCc---------------
Confidence 44578999999999999888752 2457889999999999999999999999998876552
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceee-ecCccccCCchhhhhhhhhccCCCcHHH
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL-TTGETRYKLPERLESYKLICESKLKPLY 316 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (475)
.|..++|||+......+.......+..+ -.......+++.+.+.+..++...+...
T Consensus 185 -----------------------RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaY 241 (442)
T KOG0340|consen 185 -----------------------RQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAY 241 (442)
T ss_pred -----------------------cceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHH
Confidence 2779999999988877766666553222 2223445677888888999999999999
Q ss_pred HHHHHHhc---CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCC
Q 011884 317 LVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 393 (475)
Q Consensus 317 l~~~l~~~---~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~Gi 393 (475)
++..+... ..+.++||+++-..|+.++..|+..+ +.+..+||.|++.+|-..+.+|+.+..+||+||++.++|+
T Consensus 242 Lv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le---~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 242 LVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLE---VRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhc---eeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 99998755 35789999999999999999999877 9999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCCCC
Q 011884 394 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 453 (475)
Q Consensus 394 Dip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 453 (475)
|+|.+++||+++.|..+..|+||+||..|.|+.|.++.++...|++.+..+++.+..-.-
T Consensus 319 DIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~ 378 (442)
T KOG0340|consen 319 DIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLT 378 (442)
T ss_pred CCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999998876443
No 22
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-46 Score=359.64 Aligned_cols=361 Identities=29% Similarity=0.413 Sum_probs=302.6
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhc---------cccceEEEcccHHHHHH
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---------RCLRALVVLPTRDLALQ 71 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~---------~~~~vlil~Pt~~L~~q 71 (475)
.|+..|+|+|+.+ ++.+..|+++++||+||||||.+|++|++..++..+. ..+.++|++|||+||.|
T Consensus 92 ~~~~~ptpvQk~s----ip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Q 167 (482)
T KOG0335|consen 92 SGYTKPTPVQKYS----IPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQ 167 (482)
T ss_pred ccccCCCcceeec----cceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhH
Confidence 3788999999876 5566679999999999999999999999999877643 24789999999999999
Q ss_pred HhhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccC
Q 011884 72 VNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 151 (475)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 151 (475)
+ .+..+++....++.+...+|+.+...+..
T Consensus 168 i---------------------------------------~nea~k~~~~s~~~~~~~ygg~~~~~q~~----------- 197 (482)
T KOG0335|consen 168 I---------------------------------------YNEARKFSYLSGMKSVVVYGGTDLGAQLR----------- 197 (482)
T ss_pred H---------------------------------------HHHHHhhcccccceeeeeeCCcchhhhhh-----------
Confidence 5 45566666777899999999976655543
Q ss_pred ccCCchhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHH-HHHHhhHHHHHHhcccccccccccc
Q 011884 152 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDA 230 (475)
Q Consensus 152 ~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~-~~~~~~i~~i~~~~~~~~~~~~~~~ 230 (475)
.+.++++|+|+||++|.+++...+ +.+++++++|+|||+.+++ .+|.+.|+.|+.......
T Consensus 198 ----------~~~~gcdIlvaTpGrL~d~~e~g~-i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~------- 259 (482)
T KOG0335|consen 198 ----------FIKRGCDILVATPGRLKDLIERGK-ISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPP------- 259 (482)
T ss_pred ----------hhccCccEEEecCchhhhhhhcce-eehhhCcEEEecchHHhhhhccccccHHHHhcccCCCC-------
Confidence 344578999999999999988744 8899999999999999998 899999999998765532
Q ss_pred ccccccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccC
Q 011884 231 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 310 (475)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (475)
....|.+++|||.+..+..+...++.+..+.......-...+.+.+....+..
T Consensus 260 ---------------------------~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 260 ---------------------------KNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE 312 (482)
T ss_pred ---------------------------ccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc
Confidence 22457899999999998888887777643333333344566777788888888
Q ss_pred CCcHHHHHHHHHhcC----CC-----eEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeE
Q 011884 311 KLKPLYLVALLQSLG----EE-----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 381 (475)
Q Consensus 311 ~~~~~~l~~~l~~~~----~~-----~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 381 (475)
..|...|.+++.... .+ +++||+.++..|..++..|...+ ++...+||.-++.+|.+.++.|+.|+..
T Consensus 313 ~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~---~~~~sIhg~~tq~er~~al~~Fr~g~~p 389 (482)
T KOG0335|consen 313 MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNG---YPAKSIHGDRTQIEREQALNDFRNGKAP 389 (482)
T ss_pred hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCC---CCceeecchhhhhHHHHHHHHhhcCCcc
Confidence 888888888887443 33 89999999999999999999776 8999999999999999999999999999
Q ss_pred EEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCCCCCccCCChh
Q 011884 382 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSS 461 (475)
Q Consensus 382 iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 461 (475)
+||||++.++|+|+|+|++||.|+.|....+|+||+||+||.|..|.+..|++..+....+.|.+.+.++. ..+|+-
T Consensus 390 vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~---q~vP~w 466 (482)
T KOG0335|consen 390 VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEAN---QEVPQW 466 (482)
T ss_pred eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhc---ccCcHH
Confidence 99999999999999999999999999999999999999999999999999999888877777777766544 456666
Q ss_pred hhhhh
Q 011884 462 LIESL 466 (475)
Q Consensus 462 ~~~~~ 466 (475)
|.+..
T Consensus 467 l~~~~ 471 (482)
T KOG0335|consen 467 LSELS 471 (482)
T ss_pred HHhhh
Confidence 66533
No 23
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-46 Score=353.99 Aligned_cols=360 Identities=34% Similarity=0.489 Sum_probs=293.0
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh-----ccccceEEEcccHHHHHHHhhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLPTRDLALQVNSA 75 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~-----~~~~~vlil~Pt~~L~~q~~~~ 75 (475)
|+++.|+..|.++ ++.+++|+|++|.++||||||++|++|+++.+.... ..|+.+||++|||+||.|+|..
T Consensus 155 m~i~~pTsVQkq~----IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~ 230 (708)
T KOG0348|consen 155 MKISAPTSVQKQA----IPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYET 230 (708)
T ss_pred hccCccchHhhcc----hhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHH
Confidence 7899999999987 555566999999999999999999999999886543 2577899999999999997665
Q ss_pred hhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCC
Q 011884 76 RCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 155 (475)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (475)
+.++ +.++.++-.+.+.||.....+..
T Consensus 231 ~qKL--------------------------------------l~~~hWIVPg~lmGGEkkKSEKA--------------- 257 (708)
T KOG0348|consen 231 VQKL--------------------------------------LKPFHWIVPGVLMGGEKKKSEKA--------------- 257 (708)
T ss_pred HHHH--------------------------------------hcCceEEeeceeecccccccHHH---------------
Confidence 4443 23456777888888876554432
Q ss_pred chhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccc
Q 011884 156 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 235 (475)
Q Consensus 156 ~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~ 235 (475)
++..+++|+|+||++|.+++.+-..+.++.++.||+||++++++.+|...|..|+..+........
T Consensus 258 ------RLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~-------- 323 (708)
T KOG0348|consen 258 ------RLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAEC-------- 323 (708)
T ss_pred ------HHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhc--------
Confidence 456688999999999999999988889999999999999999999999999999987743111100
Q ss_pred cccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCc-----------------------
Q 011884 236 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE----------------------- 292 (475)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~----------------------- 292 (475)
.....-+..+.+++|||+...+..+....+.+|..+..+.
T Consensus 324 -----------------~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~ 386 (708)
T KOG0348|consen 324 -----------------KDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDK 386 (708)
T ss_pred -----------------ccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccc
Confidence 0111112567899999999999999999999998876221
Q ss_pred -cccCCchhhhhhhhhccCCCcHHHHHHHHHhc----CCCeEEEEcCChHHHHHHHHHHhhcCCC---------------
Q 011884 293 -TRYKLPERLESYKLICESKLKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFGEL--------------- 352 (475)
Q Consensus 293 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~lvf~~s~~~~~~l~~~l~~~~~~--------------- 352 (475)
....+|+.+.+.+..++++.+...|..++... ...++|||+.+.+.++.=+..+.+.-..
T Consensus 387 l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~ 466 (708)
T KOG0348|consen 387 LDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLP 466 (708)
T ss_pred cccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCCh
Confidence 11345667777788888998888777777543 6679999999999888888777653211
Q ss_pred ----ceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCc
Q 011884 353 ----RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 428 (475)
Q Consensus 353 ----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~ 428 (475)
+.++.-+||+|++++|..++..|...+..||+||++.++|+|+|+++.||.|++|.+..+|+||+||..|.|..|.
T Consensus 467 ~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~ 546 (708)
T KOG0348|consen 467 PLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGE 546 (708)
T ss_pred hhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCc
Confidence 3468899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeechhHHHHHHHHHHh
Q 011884 429 CFTLLHKDEVKRFKKLLQKA 448 (475)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~~~ 448 (475)
+++|....|.+.++.+..+.
T Consensus 547 alLfL~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 547 ALLFLLPSEAEYVNYLKKHH 566 (708)
T ss_pred eEEEecccHHHHHHHHHhhc
Confidence 99999999998666665444
No 24
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-47 Score=339.56 Aligned_cols=344 Identities=27% Similarity=0.451 Sum_probs=308.3
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+|.|+++ ++..+.|+|++.-|..|+|||.+|.+|++..+... ...-..++++|||+||-|
T Consensus 103 ~G~ekPSPiQees----IPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-~~~IQ~~ilVPtrelALQ--------- 168 (459)
T KOG0326|consen 103 KGFEKPSPIQEES----IPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-KNVIQAIILVPTRELALQ--------- 168 (459)
T ss_pred hccCCCCCccccc----cceeecchhhhhhccCCCCCccceechhhhhcCcc-ccceeEEEEeecchhhHH---------
Confidence 6999999999987 55556799999999999999999999999987654 345579999999999999
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
..+.+..+++..++++.+-+||++...++-.
T Consensus 169 ------------------------------tSqvc~~lskh~~i~vmvttGGT~lrDDI~R------------------- 199 (459)
T KOG0326|consen 169 ------------------------------TSQVCKELSKHLGIKVMVTTGGTSLRDDIMR------------------- 199 (459)
T ss_pred ------------------------------HHHHHHHHhcccCeEEEEecCCcccccceee-------------------
Confidence 7888899999999999999999987766542
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
+....+++|+||+++++++.+ +...+++..++|+|||+.+++..|...++.++..++.
T Consensus 200 --l~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~------------------- 257 (459)
T KOG0326|consen 200 --LNQTVHLVVGTPGRILDLAKK-GVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPK------------------- 257 (459)
T ss_pred --ecCceEEEEcCChhHHHHHhc-ccccchhceEEEechhhhhhchhhhhHHHHHHHhCCc-------------------
Confidence 334569999999999999987 4477899999999999999999999999999998876
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHH
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 320 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (475)
..|.+++|||.+-.+..+....+.+|..+..-. ......+.+++..+.+..|...|..+
T Consensus 258 -------------------~rQillySATFP~tVk~Fm~~~l~kPy~INLM~--eLtl~GvtQyYafV~e~qKvhCLntL 316 (459)
T KOG0326|consen 258 -------------------ERQILLYSATFPLTVKGFMDRHLKKPYEINLME--ELTLKGVTQYYAFVEERQKVHCLNTL 316 (459)
T ss_pred -------------------cceeeEEecccchhHHHHHHHhccCcceeehhh--hhhhcchhhheeeechhhhhhhHHHH
Confidence 337899999999999999999999987665443 34567788888899999999999999
Q ss_pred HHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcE
Q 011884 321 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 400 (475)
Q Consensus 321 l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~ 400 (475)
+....-.+.+|||+|....+.+++.+.+.+ +.+.++|+.|-++.|.++..+|++|+.+.||||+.+.+|||++.+++
T Consensus 317 fskLqINQsIIFCNS~~rVELLAkKITelG---yscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNv 393 (459)
T KOG0326|consen 317 FSKLQINQSIIFCNSTNRVELLAKKITELG---YSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNV 393 (459)
T ss_pred HHHhcccceEEEeccchHhHHHHHHHHhcc---chhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeE
Confidence 888777799999999999999999999887 99999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCCCC
Q 011884 401 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 453 (475)
Q Consensus 401 Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 453 (475)
||.++.|++..+|.+|+||.||.|..|.++.+++-+|...+.++++.+..+-.
T Consensus 394 VINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~ 446 (459)
T KOG0326|consen 394 VINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIK 446 (459)
T ss_pred EEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999986543
No 25
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.1e-46 Score=343.57 Aligned_cols=355 Identities=29% Similarity=0.451 Sum_probs=300.6
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhh-----hccccceEEEcccHHHHHHHhhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRDLALQVNSA 75 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~-----~~~~~~vlil~Pt~~L~~q~~~~ 75 (475)
+||.+|+|.|.+||. .+++|.|++-.|.||+|||+++++|.+-++... +..++.+|+++||++|+.|+.-+
T Consensus 238 ~GFqKPtPIqSQaWP----I~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e 313 (629)
T KOG0336|consen 238 TGFQKPTPIQSQAWP----ILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGE 313 (629)
T ss_pred ccCCCCCcchhcccc----eeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhH
Confidence 599999999999876 445699999999999999999999976554322 23567899999999999995443
Q ss_pred hhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCC
Q 011884 76 RCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 155 (475)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (475)
.++ + ..-+.+..|++|+.+..++++.+..
T Consensus 314 ~~k---------------------------------------y-syng~ksvc~ygggnR~eqie~lkr----------- 342 (629)
T KOG0336|consen 314 VKK---------------------------------------Y-SYNGLKSVCVYGGGNRNEQIEDLKR----------- 342 (629)
T ss_pred HhH---------------------------------------h-hhcCcceEEEecCCCchhHHHHHhc-----------
Confidence 322 2 2237888999999988888775544
Q ss_pred chhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccc
Q 011884 156 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 235 (475)
Q Consensus 156 ~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~ 235 (475)
+.+|+|+||++|.++... ...++.++-++|+|||+.+++++|..+|..|+--++.
T Consensus 343 ----------gveiiiatPgrlndL~~~-n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRP-------------- 397 (629)
T KOG0336|consen 343 ----------GVEIIIATPGRLNDLQMD-NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRP-------------- 397 (629)
T ss_pred ----------CceEEeeCCchHhhhhhc-CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCC--------------
Confidence 569999999999988776 4488999999999999999999999999998865443
Q ss_pred cccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHH
Q 011884 236 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL 315 (475)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (475)
..+.++.|||+++.+..++..++++|..+..+.........+++.........+..
T Consensus 398 ------------------------DRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~ 453 (629)
T KOG0336|consen 398 ------------------------DRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLE 453 (629)
T ss_pred ------------------------cceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHH
Confidence 34789999999999999999999999988877766555566677776667777888
Q ss_pred HHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCC
Q 011884 316 YLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 394 (475)
Q Consensus 316 ~l~~~l~~~-~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiD 394 (475)
.+..+++.+ ...++||||.++..|+.+...+.-.+ +..-.+||+-.+.+|+..++.|+.|+.+|||+|++.++|+|
T Consensus 454 ~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~g---i~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlD 530 (629)
T KOG0336|consen 454 IVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKG---ISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLD 530 (629)
T ss_pred HHHHHHHhcCCCceEEEEEechhhhhhccchhhhcc---cchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCC
Confidence 887777765 56799999999999998887776444 88899999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCCCCCccCCChhhhhh
Q 011884 395 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIES 465 (475)
Q Consensus 395 ip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 465 (475)
+|++++|+.|+.|.++.+|+||+||.||.|+.|.++.++..+|-...++|++-++.+ ...+|+.|...
T Consensus 531 v~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~a---eQevPdeL~~m 598 (629)
T KOG0336|consen 531 VPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERA---EQEVPDELVRM 598 (629)
T ss_pred chhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHh---hhhCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999988888754 36777776654
No 26
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8e-44 Score=362.71 Aligned_cols=333 Identities=23% Similarity=0.361 Sum_probs=241.8
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
|||.+|+|+|.+|+..++. ++++++.+|||+|||++|++|++. .+..+||++|+++|+.|+++.+..
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~-------~~~~~lVi~P~~~L~~dq~~~l~~-- 73 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALC-------SDGITLVISPLISLMEDQVLQLKA-- 73 (470)
T ss_pred cCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHH-------cCCcEEEEecHHHHHHHHHHHHHH--
Confidence 7999999999998776654 889999999999999999999874 234799999999999986444322
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.++.+..+.++....+.... .
T Consensus 74 -----------------------------------------~gi~~~~l~~~~~~~~~~~i------------------~ 94 (470)
T TIGR00614 74 -----------------------------------------SGIPATFLNSSQSKEQQKNV------------------L 94 (470)
T ss_pred -----------------------------------------cCCcEEEEeCCCCHHHHHHH------------------H
Confidence 25666666666544332211 1
Q ss_pred Hhh-hcCCcEEEeCchHHHHHhhcCCCc-ccCCccEEEEcchHHHHHHH--HHhhHHHHHHhcccccccccccccccccc
Q 011884 161 QEL-QSAVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPS 236 (475)
Q Consensus 161 ~~~-~~~~~Iii~Tp~~l~~~l~~~~~~-~~~~~~~lVvDE~H~l~~~~--~~~~i~~i~~~~~~~~~~~~~~~~~~~~~ 236 (475)
..+ ...++|+++||+.+.........+ ...+++++|+||||++.+++ +......+......
T Consensus 95 ~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~--------------- 159 (470)
T TIGR00614 95 TDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQK--------------- 159 (470)
T ss_pred HHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHH---------------
Confidence 111 224689999999875322110111 45689999999999986543 23332222211110
Q ss_pred ccccchhhhccccccCCCCCCccchheeeeceeeccCccc--cccccccCceeeecCccccCCchhhhhhhhhccCCCcH
Q 011884 237 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 314 (475)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (475)
++..+.+++|||+++.... .....+..+.++......+.+. +..........
T Consensus 160 ---------------------~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~-----~~v~~~~~~~~ 213 (470)
T TIGR00614 160 ---------------------FPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLY-----YEVRRKTPKIL 213 (470)
T ss_pred ---------------------cCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcE-----EEEEeCCccHH
Confidence 1234679999999876443 2233444555444333222211 00111111334
Q ss_pred HHHHHHHH-hcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCC
Q 011884 315 LYLVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 393 (475)
Q Consensus 315 ~~l~~~l~-~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~Gi 393 (475)
..+...+. ...+..+||||+|++.++.+++.|...+ +.+..+||+|+..+|.++++.|++|+.+|||||+++++||
T Consensus 214 ~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g---~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GI 290 (470)
T TIGR00614 214 EDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG---IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGI 290 (470)
T ss_pred HHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC---CCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccC
Confidence 45566665 4456677999999999999999999766 8899999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhc
Q 011884 394 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 449 (475)
Q Consensus 394 Dip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~ 449 (475)
|+|++++||++++|.|+..|.|++||+||.|..|.|++++...|...++.++....
T Consensus 291 D~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~ 346 (470)
T TIGR00614 291 NKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLMEEP 346 (470)
T ss_pred CcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999888876543
No 27
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.1e-43 Score=376.14 Aligned_cols=345 Identities=19% Similarity=0.216 Sum_probs=245.5
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+++|.+|++.++ +|+|+++++|||||||++|++|+++.+... ++.++||++||++|+.|+++++
T Consensus 32 ~g~~~p~~~Q~~ai~~il----~G~nvvv~apTGSGKTla~~LPiL~~l~~~--~~~~aL~l~PtraLa~q~~~~l---- 101 (742)
T TIGR03817 32 AGIHRPWQHQARAAELAH----AGRHVVVATGTASGKSLAYQLPVLSALADD--PRATALYLAPTKALAADQLRAV---- 101 (742)
T ss_pred cCCCcCCHHHHHHHHHHH----CCCCEEEECCCCCcHHHHHHHHHHHHHhhC--CCcEEEEEcChHHHHHHHHHHH----
Confidence 589999999999877654 599999999999999999999999988754 4568999999999999965554
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
..+. ..++++..+.|+.+....
T Consensus 102 -----------------------------------~~l~-~~~i~v~~~~Gdt~~~~r---------------------- 123 (742)
T TIGR03817 102 -----------------------------------RELT-LRGVRPATYDGDTPTEER---------------------- 123 (742)
T ss_pred -----------------------------------HHhc-cCCeEEEEEeCCCCHHHH----------------------
Confidence 3333 336788888888764332
Q ss_pred HhhhcCCcEEEeCchHHHHHhhc-CC--CcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINA-TR--GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~-~~--~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
..+..+++|+|+||+++...+.. +. ...++++++||+||+|.+.. .++.++..+++++......
T Consensus 124 ~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~------------ 190 (742)
T TIGR03817 124 RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCAR------------ 190 (742)
T ss_pred HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHh------------
Confidence 12334579999999999753322 11 12368899999999999854 4666666666655331110
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhh---hhhh-------
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES---YKLI------- 307 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------- 307 (475)
.....|++++|||+++... ........+.........+........ ....
T Consensus 191 -------------------~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 250 (742)
T TIGR03817 191 -------------------YGASPVFVLASATTADPAA-AASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGA 250 (742)
T ss_pred -------------------cCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEECCCCCCcCceEEEEecCCcccccccccc
Confidence 0013478999999986544 343334444332211111110000000 0000
Q ss_pred ----ccCCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcC-----CCceeeEEeccccCHHHHHHHHHHHHcC
Q 011884 308 ----CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-----ELRIKIKEYSGLQRQSVRSKTLKAFREG 378 (475)
Q Consensus 308 ----~~~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~-----~~~~~~~~~~g~~~~~~r~~~~~~f~~g 378 (475)
.....+...+..++.. +.++||||+|+..++.+++.+++.. ..+.++..+||++++++|.+++++|++|
T Consensus 251 ~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G 328 (742)
T TIGR03817 251 PVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDG 328 (742)
T ss_pred ccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcC
Confidence 0011233444454443 6799999999999999999987641 1236788999999999999999999999
Q ss_pred CeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeec--hhHHHHHHHHHHh
Q 011884 379 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK--DEVKRFKKLLQKA 448 (475)
Q Consensus 379 ~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~--~~~~~~~~l~~~~ 448 (475)
+.++||||+++++|||+|++++||+++.|.+...|+||+||+||.|+.|.++++... .|.-.++...+..
T Consensus 329 ~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~ 400 (742)
T TIGR03817 329 ELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALF 400 (742)
T ss_pred CceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHh
Confidence 999999999999999999999999999999999999999999999999999988763 3444444443333
No 28
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-43 Score=331.69 Aligned_cols=366 Identities=30% Similarity=0.432 Sum_probs=296.8
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh-----ccccceEEEcccHHHHHHHhhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLPTRDLALQVNSA 75 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~-----~~~~~vlil~Pt~~L~~q~~~~ 75 (475)
.||++|+-.|..| ++.++.|+|++..|.||||||.+|++|+++.+.... ..++.++|++||++||.|.+..
T Consensus 37 lG~ekpTlIQs~a----IplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~v 112 (569)
T KOG0346|consen 37 LGWEKPTLIQSSA----IPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKV 112 (569)
T ss_pred hCcCCcchhhhcc----cchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHH
Confidence 4899999999887 455556999999999999999999999999886543 2467899999999999998887
Q ss_pred hhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCC
Q 011884 76 RCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 155 (475)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (475)
++++ ...|.. .+++.-+.++.+....
T Consensus 113 iekL--------------~~~c~k-----------------------~lr~~nl~s~~sdsv~----------------- 138 (569)
T KOG0346|consen 113 IEKL--------------VEYCSK-----------------------DLRAINLASSMSDSVN----------------- 138 (569)
T ss_pred HHHH--------------HHHHHH-----------------------hhhhhhhhcccchHHH-----------------
Confidence 6664 122221 1222222222221111
Q ss_pred chhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccc
Q 011884 156 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 235 (475)
Q Consensus 156 ~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~ 235 (475)
...+...|+|+|+||..+..++.......+..++++|+|||+-++.-+|.+.+..+...++.
T Consensus 139 ----~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr-------------- 200 (569)
T KOG0346|consen 139 ----SVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPR-------------- 200 (569)
T ss_pred ----HHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCc--------------
Confidence 22445568999999999999988766567888999999999999999999999888887764
Q ss_pred cccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHH
Q 011884 236 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL 315 (475)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (475)
.+|.+++|||++.++..+.++.+.+|.+..........+..+.++...+....|+.
T Consensus 201 ------------------------~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfl 256 (569)
T KOG0346|consen 201 ------------------------IYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFL 256 (569)
T ss_pred ------------------------hhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHH
Confidence 55889999999999999999999999999888888788899999999999999999
Q ss_pred HHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-------
Q 011884 316 YLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD------- 387 (475)
Q Consensus 316 ~l~~~l~~-~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~------- 387 (475)
.++.+++- ...+++|||+++.+.|.++.-.|+..+ ++.++++|.++...|..+++.|.+|-++++|||+
T Consensus 257 llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFG---iksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~ 333 (569)
T KOG0346|consen 257 LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFG---IKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDK 333 (569)
T ss_pred HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhC---cHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhh
Confidence 99998873 367899999999999999999999887 9999999999999999999999999999999998
Q ss_pred ----------------------------CcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHH
Q 011884 388 ----------------------------AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 439 (475)
Q Consensus 388 ----------------------------~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 439 (475)
-.++|||+.++..|+.++.|.+...|+||+||.+|.++.|.++.|+...+..
T Consensus 334 ~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 334 LEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred hhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 1347999999999999999999999999999999999999999999887766
Q ss_pred ---HHHHHHHHh----cCCCCCccCCChhhhhhhhcc
Q 011884 440 ---RFKKLLQKA----DNDSCPIHSIPSSLIESLRPV 469 (475)
Q Consensus 440 ---~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~ 469 (475)
+++++++.- +..-..+-++...-+|.++..
T Consensus 414 g~~~le~~~~d~~~~~~~qilqPY~f~~eevesfryR 450 (569)
T KOG0346|consen 414 GKESLESILKDENRQEGRQILQPYQFRMEEVESFRYR 450 (569)
T ss_pred hhhHHHHHHhhHHhhcCccccccccchHHHHHHHHHH
Confidence 555554442 111223344444455555443
No 29
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-42 Score=328.54 Aligned_cols=353 Identities=28% Similarity=0.449 Sum_probs=303.3
Q ss_pred CCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh----ccccceEEEcccHHHHHHHhhhhhc
Q 011884 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 3 ~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~----~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
|.+|+|.|-++ ++..+.+++++=.|.||||||.+++.|++.+++.+. ..++-.+|++||++|+.|
T Consensus 243 y~kptpiq~qa----lptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Q------- 311 (731)
T KOG0339|consen 243 YEKPTPIQCQA----LPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQ------- 311 (731)
T ss_pred cccCCcccccc----cccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHH-------
Confidence 56899999876 566667999999999999999999999988887643 256789999999999999
Q ss_pred ccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchh
Q 011884 79 YCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 158 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
+...++++++.-++++++++||.+.+++...+
T Consensus 312 --------------------------------i~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~L---------------- 343 (731)
T KOG0339|consen 312 --------------------------------IFSEAKKFGKAYGLRVVAVYGGGSKWEQSKEL---------------- 343 (731)
T ss_pred --------------------------------HHHHHHHhhhhccceEEEeecCCcHHHHHHhh----------------
Confidence 55567777788899999999999988887644
Q ss_pred HHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccc
Q 011884 159 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238 (475)
Q Consensus 159 ~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
..+|.|+|+||++|.+.+.. +..++.++.++|+||++++.+.+|.++++.|.+.++.
T Consensus 344 -----k~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirp----------------- 400 (731)
T KOG0339|consen 344 -----KEGAEIVVATPGRLIDMVKM-KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRP----------------- 400 (731)
T ss_pred -----hcCCeEEEechHHHHHHHHh-hcccceeeeEEEEechhhhhccccHHHHHHHHhhcCC-----------------
Confidence 45789999999999999886 5588999999999999999999999999999998765
Q ss_pred ccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhcc-CCCcHHHH
Q 011884 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYL 317 (475)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l 317 (475)
..|.+++|||+...+..+++..+.+|+.+........ .+.+.+.+..+. ...|+..|
T Consensus 401 ---------------------drQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgea-n~dITQ~V~V~~s~~~Kl~wl 458 (731)
T KOG0339|consen 401 ---------------------DRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEA-NEDITQTVSVCPSEEKKLNWL 458 (731)
T ss_pred ---------------------cceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhcc-ccchhheeeeccCcHHHHHHH
Confidence 4488999999999999999999999987776644433 345555554444 45577666
Q ss_pred HHHHHhc-CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCC
Q 011884 318 VALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 396 (475)
Q Consensus 318 ~~~l~~~-~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip 396 (475)
...|.+. ..+++|+|+..+..++.++..|+-.+ +++..+||+|.+.+|.+++..|+.+...||++|++..+|+|+|
T Consensus 459 ~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~---~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~ 535 (731)
T KOG0339|consen 459 LRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKG---FNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIP 535 (731)
T ss_pred HHHhhhhccCCcEEEEEeccCCHHHHHHHhcccc---ceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcc
Confidence 6655444 67899999999999999999998665 9999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCCCCCccCCChhhhhh
Q 011884 397 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIES 465 (475)
Q Consensus 397 ~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 465 (475)
.+..||.++..+++..+.||+||.||.|..|..+.+++..|.+..-.|.+.++.+. .-+|..+.+.
T Consensus 536 ~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~ag---QnVP~~l~dl 601 (731)
T KOG0339|consen 536 SIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAG---QNVPDELMDL 601 (731)
T ss_pred ccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhcc---ccCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999998776 3455555554
No 30
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-43 Score=336.59 Aligned_cols=367 Identities=30% Similarity=0.447 Sum_probs=294.5
Q ss_pred CCCCcccchhhhhhhhhcCCCCCC-CcEEEECCCCCchhHHhHHHHHHHHhhh----------hccccc--eEEEcccHH
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNR----------AVRCLR--ALVVLPTRD 67 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~-~~~li~a~tGsGKT~~~~~~~~~~l~~~----------~~~~~~--vlil~Pt~~ 67 (475)
+||+.|++.|... +++...| .|++=.|.||||||++|-+|+++.+... ..++++ .||++|||+
T Consensus 199 ~gFs~Pt~IQsl~----lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRE 274 (731)
T KOG0347|consen 199 LGFSRPTEIQSLV----LPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRE 274 (731)
T ss_pred cCCCCCccchhhc----ccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHH
Confidence 6999999999775 5555557 7999999999999999999999844322 123445 999999999
Q ss_pred HHHHHhhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccc
Q 011884 68 LALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 147 (475)
Q Consensus 68 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 147 (475)
||.| +..-+..+...+++++..++||-....+.+.
T Consensus 275 La~Q---------------------------------------V~~Hl~ai~~~t~i~v~si~GGLavqKQqRl------ 309 (731)
T KOG0347|consen 275 LAHQ---------------------------------------VKQHLKAIAEKTQIRVASITGGLAVQKQQRL------ 309 (731)
T ss_pred HHHH---------------------------------------HHHHHHHhccccCeEEEEeechhHHHHHHHH------
Confidence 9999 6777788888999999999999988777553
Q ss_pred cccCccCCchhHHHhhhcCCcEEEeCchHHHHHhhcCCC--cccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccc
Q 011884 148 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG--FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 225 (475)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~--~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~ 225 (475)
+...|+|+|+||++||.++..... -++.+++.+|+||++++.+.++.+.+..++..+.....
T Consensus 310 ---------------L~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~- 373 (731)
T KOG0347|consen 310 ---------------LNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQK- 373 (731)
T ss_pred ---------------HhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhc-
Confidence 334679999999999999876442 34788999999999999999999999999988762111
Q ss_pred cccccccccccccccchhhhccccccCCCCCCccchheeeeceeeccCccc----------------------ccccccc
Q 011884 226 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK----------------------LAQLDLH 283 (475)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~----------------------~~~~~~~ 283 (475)
.+..|.+++|||+.-.... +...+++
T Consensus 374 --------------------------------~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~ 421 (731)
T KOG0347|consen 374 --------------------------------NRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFR 421 (731)
T ss_pred --------------------------------ccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCcc
Confidence 1234789999998742111 0112222
Q ss_pred CceeeecCccccCCchhhhhhhhhccCCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEecccc
Q 011884 284 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 363 (475)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~ 363 (475)
....+........+...+....+.|+...|.-.|+.++..+ +|++|||||+.+.+.+++-.|+..+ ++...+|+.|
T Consensus 422 ~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L~---i~p~~LHA~M 497 (731)
T KOG0347|consen 422 GKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNLD---IPPLPLHASM 497 (731)
T ss_pred CCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec-CCceEEEechHHHHHHHHHHHhhcC---CCCchhhHHH
Confidence 22111111222233445555667777778888888887776 5799999999999999999999876 8999999999
Q ss_pred CHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHH
Q 011884 364 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 443 (475)
Q Consensus 364 ~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~ 443 (475)
.+..|.+-+++|++....+|+||++..+|+|||++++||+|..|.+..-|+||.||..|.+..|..++++...+..-+++
T Consensus 498 ~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~K 577 (731)
T KOG0347|consen 498 IQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKK 577 (731)
T ss_pred HHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC-CCCCccCCChhhhhhhhc
Q 011884 444 LLQKADN-DSCPIHSIPSSLIESLRP 468 (475)
Q Consensus 444 l~~~~~~-~~~~~~~~~~~~~~~~~~ 468 (475)
+.+.++. .+.|.+|+...+++-++.
T Consensus 578 L~ktL~k~~dlpifPv~~~~m~~lke 603 (731)
T KOG0347|consen 578 LCKTLKKKEDLPIFPVETDIMDALKE 603 (731)
T ss_pred HHHHHhhccCCCceeccHHHHHHHHH
Confidence 8888764 456888887777776654
No 31
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.8e-42 Score=362.29 Aligned_cols=335 Identities=20% Similarity=0.269 Sum_probs=243.2
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
||+..|+|.|.+++..++ .|+|+++.+|||+|||++|++|++.. +..+|||+|+++|+.+++..
T Consensus 456 FG~~sFRp~Q~eaI~aiL----~GrDVLVimPTGSGKSLcYQLPAL~~-------~GiTLVISPLiSLmqDQV~~----- 519 (1195)
T PLN03137 456 FGNHSFRPNQREIINATM----SGYDVFVLMPTGGGKSLTYQLPALIC-------PGITLVISPLVSLIQDQIMN----- 519 (1195)
T ss_pred cCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCccHHHHHHHHHHHc-------CCcEEEEeCHHHHHHHHHHH-----
Confidence 799999999999876654 59999999999999999999999752 34799999999999853222
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
... .++....+.++....+....+...
T Consensus 520 ---------------------------------L~~-----~GI~Aa~L~s~~s~~eq~~ilr~l--------------- 546 (1195)
T PLN03137 520 ---------------------------------LLQ-----ANIPAASLSAGMEWAEQLEILQEL--------------- 546 (1195)
T ss_pred ---------------------------------HHh-----CCCeEEEEECCCCHHHHHHHHHHH---------------
Confidence 211 367788888877665543322110
Q ss_pred HhhhcCCcEEEeCchHHHH---HhhcCCCc-ccCCccEEEEcchHHHHHHH--HHhhHHHHHHhcccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMD---HINATRGF-TLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFL 234 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~---~l~~~~~~-~~~~~~~lVvDE~H~l~~~~--~~~~i~~i~~~~~~~~~~~~~~~~~~~ 234 (475)
......++|+++||+++.. ++...... ....+++|||||||+++.++ |......+-... .
T Consensus 547 ~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr-~------------- 612 (1195)
T PLN03137 547 SSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILK-Q------------- 612 (1195)
T ss_pred HhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHH-H-------------
Confidence 0001347999999999752 12211111 23458899999999997654 333333221110 0
Q ss_pred ccccccchhhhccccccCCCCCCccchheeeeceeeccCcccc--ccccccCceeeecCccccCCchhhhhhhhhccCC-
Q 011884 235 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL--AQLDLHHPLFLTTGETRYKLPERLESYKLICESK- 311 (475)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 311 (475)
.++..+.+++|||.++..... ..+.+..+.++.....++.+ .+......
T Consensus 613 ----------------------~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL------~y~Vv~k~k 664 (1195)
T PLN03137 613 ----------------------KFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNL------WYSVVPKTK 664 (1195)
T ss_pred ----------------------hCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccce------EEEEeccch
Confidence 012346789999998776552 22334444444333222211 11111111
Q ss_pred CcHHHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcc
Q 011884 312 LKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 390 (475)
Q Consensus 312 ~~~~~l~~~l~~~-~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~ 390 (475)
.....+..++... .++..||||.++..++.++..|...+ +++..+||+|+..+|..++++|.+|+.+|||||.+++
T Consensus 665 k~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~G---ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFG 741 (1195)
T PLN03137 665 KCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFG---HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFG 741 (1195)
T ss_pred hHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCC---CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhh
Confidence 1234455555433 35688999999999999999999876 8999999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhc
Q 011884 391 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 449 (475)
Q Consensus 391 ~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~ 449 (475)
+|||+|++++||++++|+|+..|.|++||+||.|..+.|++++...|...++.++...+
T Consensus 742 MGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~~~ 800 (1195)
T PLN03137 742 MGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGG 800 (1195)
T ss_pred cCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999886543
No 32
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=7e-42 Score=357.34 Aligned_cols=329 Identities=21% Similarity=0.303 Sum_probs=241.4
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
|||.+|+|+|.+++..++ +++++++.+|||+|||++|++|++.. ...+||++|+++|+.|+++.+..
T Consensus 21 fG~~~~r~~Q~~ai~~il----~g~dvlv~apTGsGKTl~y~lpal~~-------~g~tlVisPl~sL~~dqv~~l~~-- 87 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVL----SGRDCLVVMPTGGGKSLCYQIPALVL-------DGLTLVVSPLISLMKDQVDQLLA-- 87 (607)
T ss_pred cCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHHHc-------CCCEEEEecHHHHHHHHHHHHHH--
Confidence 799999999999877665 48999999999999999999998742 33799999999999996544322
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.++....+.++.........+
T Consensus 88 -----------------------------------------~gi~~~~~~s~~~~~~~~~~~------------------ 108 (607)
T PRK11057 88 -----------------------------------------NGVAAACLNSTQTREQQLEVM------------------ 108 (607)
T ss_pred -----------------------------------------cCCcEEEEcCCCCHHHHHHHH------------------
Confidence 145566666655443332211
Q ss_pred Hhhh-cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHH--HHhhHHHHHHhccccccccccccccccccc
Q 011884 161 QELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 161 ~~~~-~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~--~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
..+. ...+++++||+.+...... ..+...+++++|+||||++..++ +......+-... .
T Consensus 109 ~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~-~---------------- 170 (607)
T PRK11057 109 AGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLR-Q---------------- 170 (607)
T ss_pred HHHhCCCCcEEEEChHHhcChHHH-HHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHH-H----------------
Confidence 1111 2368999999998632111 11334578999999999986543 222222221110 0
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccCccc--cccccccCceeeecCccccCCchhhhhhhhhccCCCcHH
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL 315 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (475)
.++..+.+++|||+++.... ...+.+..+.........+.+ .+.......+..
T Consensus 171 -------------------~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl------~~~v~~~~~~~~ 225 (607)
T PRK11057 171 -------------------RFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNI------RYTLVEKFKPLD 225 (607)
T ss_pred -------------------hCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcc------eeeeeeccchHH
Confidence 01234679999999876543 223344555444332222111 111122233455
Q ss_pred HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCC
Q 011884 316 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 395 (475)
Q Consensus 316 ~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDi 395 (475)
.+...+....++++||||+|+..++.++..|...+ +.+..+||+|+..+|.++++.|++|+.+|||||+++++|||+
T Consensus 226 ~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g---~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDi 302 (607)
T PRK11057 226 QLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRG---ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINK 302 (607)
T ss_pred HHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCC---CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCC
Confidence 66777777778899999999999999999999876 889999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHH
Q 011884 396 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 447 (475)
Q Consensus 396 p~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~ 447 (475)
|++++||+++.|.|...|.|++||+||.|.+|.|+++++..|...++.++..
T Consensus 303 p~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~ 354 (607)
T PRK11057 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (607)
T ss_pred CCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999998888877654
No 33
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.9e-41 Score=365.85 Aligned_cols=368 Identities=20% Similarity=0.244 Sum_probs=248.3
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh-----ccccceEEEcccHHHHHHHhhhh
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLPTRDLALQVNSAR 76 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~-----~~~~~vlil~Pt~~L~~q~~~~~ 76 (475)
+|..|+|.|.+|++.+ .+|++++++||||||||+++++|++..+.... .++.++||++|+++|+.|+++.+
T Consensus 29 ~~~~~tpiQ~~Ai~~i----l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L 104 (876)
T PRK13767 29 KFGTFTPPQRYAIPLI----HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNL 104 (876)
T ss_pred ccCCCCHHHHHHHHHH----HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHH
Confidence 5778999999998765 45899999999999999999999998876532 23457999999999999988876
Q ss_pred hcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccc-cceEeEccCCCchHHHHHHHhhccccccCccCC
Q 011884 77 CKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYD 155 (475)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (475)
.+.+. .+.+.+...+... ++++.+.+|+.+..+....+
T Consensus 105 ~~~l~----------------------------~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l------------- 143 (876)
T PRK13767 105 EEPLT----------------------------EIREIAKERGEELPEIRVAIRTGDTSSYEKQKML------------- 143 (876)
T ss_pred HHHHH----------------------------HHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH-------------
Confidence 54310 0122233333443 78899999998766554332
Q ss_pred chhHHHhhhcCCcEEEeCchHHHHHhhcCCC-cccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccc
Q 011884 156 PEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 234 (475)
Q Consensus 156 ~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~-~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 234 (475)
...++|+||||+++..++.+... ..+.++++||+||+|.+.+..++.++...+.++.....
T Consensus 144 --------~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~---------- 205 (876)
T PRK13767 144 --------KKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAG---------- 205 (876)
T ss_pred --------hCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcC----------
Confidence 23569999999999877765331 24788999999999999877677767666665543110
Q ss_pred ccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccc-------cCceeeecCccccCCc----hhhhh
Q 011884 235 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL-------HHPLFLTTGETRYKLP----ERLES 303 (475)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~----~~~~~ 303 (475)
+..+.+++|||+.+. ........ ..+..+.......... .....
T Consensus 206 ------------------------~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~ 260 (876)
T PRK13767 206 ------------------------GEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDD 260 (876)
T ss_pred ------------------------CCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCcc
Confidence 123679999998652 22221111 1111111000000000 00000
Q ss_pred hhhhccCCCc----HHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCC---CceeeEEeccccCHHHHHHHHHHHH
Q 011884 304 YKLICESKLK----PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFR 376 (475)
Q Consensus 304 ~~~~~~~~~~----~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~---~~~~~~~~~g~~~~~~r~~~~~~f~ 376 (475)
. ........ ...+.+.+. .++++||||+|+..|+.++..|++... .+..+..+||+++.++|..+++.|+
T Consensus 261 l-~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk 337 (876)
T PRK13767 261 L-IHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLK 337 (876)
T ss_pred c-cccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHH
Confidence 0 00111111 122333333 357899999999999999999987432 2367899999999999999999999
Q ss_pred cCCeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccC-CCCcEEEEe-echhHHHHHHHHHHhcCCCCC
Q 011884 377 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG-QLGRCFTLL-HKDEVKRFKKLLQKADNDSCP 454 (475)
Q Consensus 377 ~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~-~~g~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 454 (475)
+|+.++||||+++++|||+|++++||+++.|.++..|+||+||+||.+ ..+.+.++. +..+.-....+.+........
T Consensus 338 ~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie 417 (876)
T PRK13767 338 RGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKID 417 (876)
T ss_pred cCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999974 334555554 444443333333333333333
Q ss_pred ccCCCh
Q 011884 455 IHSIPS 460 (475)
Q Consensus 455 ~~~~~~ 460 (475)
....+.
T Consensus 418 ~~~~~~ 423 (876)
T PRK13767 418 RVHIPK 423 (876)
T ss_pred CCCCCC
Confidence 333333
No 34
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.2e-41 Score=353.40 Aligned_cols=330 Identities=21% Similarity=0.311 Sum_probs=242.6
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
|||.+|+|+|.++++.++. |+++++++|||+|||++|++|++. .+..++|++|+++|+.|+++.+
T Consensus 9 fg~~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal~-------~~g~~lVisPl~sL~~dq~~~l---- 73 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPALL-------LKGLTVVISPLISLMKDQVDQL---- 73 (591)
T ss_pred cCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHHH-------cCCcEEEEcCCHHHHHHHHHHH----
Confidence 7999999999998776654 899999999999999999998874 2336899999999999854432
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.. .++.+..++++....+....+.
T Consensus 74 -----------------------------------~~----~gi~~~~~~s~~~~~~~~~~~~----------------- 97 (591)
T TIGR01389 74 -----------------------------------RA----AGVAAAYLNSTLSAKEQQDIEK----------------- 97 (591)
T ss_pred -----------------------------------HH----cCCcEEEEeCCCCHHHHHHHHH-----------------
Confidence 22 2566777777665444322111
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHH--HHhhHHHHHHhcccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~--~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
.......+|+++||+.+...... ......+++++||||||++..++ +......+......
T Consensus 98 ~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~----------------- 159 (591)
T TIGR01389 98 ALVNGELKLLYVAPERLEQDYFL-NMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAER----------------- 159 (591)
T ss_pred HHhCCCCCEEEEChhHhcChHHH-HHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHh-----------------
Confidence 11123468999999998532211 11335679999999999986432 22222222221111
Q ss_pred ccchhhhccccccCCCCCCccchheeeeceeeccCcccccc--ccccCceeeecCccccCCchhhhhhhhhccCCCcHHH
Q 011884 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 316 (475)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (475)
++..+.+++|||.++....... +.+..+..+......+.+ .+.......+...
T Consensus 160 -------------------~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl------~~~v~~~~~~~~~ 214 (591)
T TIGR01389 160 -------------------FPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNL------RFSVVKKNNKQKF 214 (591)
T ss_pred -------------------CCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCc------EEEEEeCCCHHHH
Confidence 1223578999999876554222 233344333222211111 1111223445667
Q ss_pred HHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCC
Q 011884 317 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 396 (475)
Q Consensus 317 l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip 396 (475)
+.+.+....++++||||+|+..++.+++.|.+.+ +++..+||+|+..+|..+++.|.+|+.+|||||+++++|||+|
T Consensus 215 l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g---~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p 291 (591)
T TIGR01389 215 LLDYLKKHRGQSGIIYASSRKKVEELAERLESQG---ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKP 291 (591)
T ss_pred HHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCC---CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCC
Confidence 7788877777899999999999999999998765 8899999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHH
Q 011884 397 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 447 (475)
Q Consensus 397 ~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~ 447 (475)
++++||++++|.|...|.|++||+||.|..+.|+++++..|...++.+++.
T Consensus 292 ~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~ 342 (591)
T TIGR01389 292 NVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQ 342 (591)
T ss_pred CCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998888877654
No 35
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-41 Score=310.95 Aligned_cols=341 Identities=23% Similarity=0.360 Sum_probs=279.2
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
|||++|++.|..|+..++.. -.++++.++..|+|||.+|.+.|+..+... ...|.++.++|||+||.|
T Consensus 108 M~F~kPskIQe~aLPlll~~--Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-~~~PQ~iCLaPtrELA~Q--------- 175 (477)
T KOG0332|consen 108 MKFQKPSKIQETALPLLLAE--PPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-VVVPQCICLAPTRELAPQ--------- 175 (477)
T ss_pred hccCCcchHHHhhcchhhcC--CchhhhhhhcCCCchhHHHHHHHHHhcCcc-ccCCCceeeCchHHHHHH---------
Confidence 89999999999986655441 238999999999999999999999987654 467789999999999999
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.-+.+..++++.++++....-+.....- +
T Consensus 176 ------------------------------~~eVv~eMGKf~~ita~yair~sk~~rG-------~-------------- 204 (477)
T KOG0332|consen 176 ------------------------------TGEVVEEMGKFTELTASYAIRGSKAKRG-------N-------------- 204 (477)
T ss_pred ------------------------------HHHHHHHhcCceeeeEEEEecCcccccC-------C--------------
Confidence 7788888999888877777655411100 0
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHH-HHHhhHHHHHHhccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 239 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~-~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 239 (475)
.-..+|+|+||+.+.+++...+...++.+.++|+|||+++++. +++..--.|...+.
T Consensus 205 ---~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP------------------- 262 (477)
T KOG0332|consen 205 ---KLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLP------------------- 262 (477)
T ss_pred ---cchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcC-------------------
Confidence 0123799999999999999877788899999999999998653 34444444444433
Q ss_pred cchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhcc-CCCcHHHHH
Q 011884 240 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLV 318 (475)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 318 (475)
+..|.+++|||.......++...+.++..+....+...+ ..+++++..|. ...|+..|.
T Consensus 263 -------------------~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L-~~IkQlyv~C~~~~~K~~~l~ 322 (477)
T KOG0332|consen 263 -------------------RNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELAL-DNIKQLYVLCACRDDKYQALV 322 (477)
T ss_pred -------------------CcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccc-cchhhheeeccchhhHHHHHH
Confidence 144789999999999999998888888777666555444 44556665555 557899998
Q ss_pred HHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCC
Q 011884 319 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 398 (475)
Q Consensus 319 ~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~ 398 (475)
++.....-++.||||.++..|..++..+.+.+ ..+..+||.|...+|..++.+|++|+.+|||+|+++.+|||++.+
T Consensus 323 ~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~G---h~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qV 399 (477)
T KOG0332|consen 323 NLYGLLTIGQSIIFCHTKATAMWLYEEMRAEG---HQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQV 399 (477)
T ss_pred HHHhhhhhhheEEEEeehhhHHHHHHHHHhcC---ceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceE
Confidence 88777778899999999999999999999887 899999999999999999999999999999999999999999999
Q ss_pred cEEEEecCC------CCHHHHHHHhhhccccCCCCcEEEEeec-hhHHHHHHHHHHhc
Q 011884 399 NNVVNYDKP------AYIKTYIHRAGRTARAGQLGRCFTLLHK-DEVKRFKKLLQKAD 449 (475)
Q Consensus 399 ~~Vv~~~~~------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~-~~~~~~~~l~~~~~ 449 (475)
++||.|++| .....|+||+||+||.|+.|.++-+++. ...+.+..+.++-+
T Consensus 400 s~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~ 457 (477)
T KOG0332|consen 400 SVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFN 457 (477)
T ss_pred EEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHh
Confidence 999999988 4688999999999999999999998865 55555666666654
No 36
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.9e-40 Score=351.22 Aligned_cols=324 Identities=24% Similarity=0.315 Sum_probs=230.6
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+|+|.+|+... +.++++++++||||||||+++.++++..+.. +.+++|++|+++|+.|.++.
T Consensus 19 ~g~~~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~~----~~kal~i~P~raLa~q~~~~----- 86 (737)
T PRK02362 19 EGIEELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIAR----GGKALYIVPLRALASEKFEE----- 86 (737)
T ss_pred CCCCcCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHhc----CCcEEEEeChHHHHHHHHHH-----
Confidence 48999999999998653 3368999999999999999999999988753 45799999999999995444
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
+..+.. .++++..++|+......
T Consensus 87 ----------------------------------~~~~~~-~g~~v~~~tGd~~~~~~---------------------- 109 (737)
T PRK02362 87 ----------------------------------FERFEE-LGVRVGISTGDYDSRDE---------------------- 109 (737)
T ss_pred ----------------------------------HHHhhc-CCCEEEEEeCCcCcccc----------------------
Confidence 333332 37888888887543221
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
....++|+|+||+++..++++.. ..+++++++|+||+|.+.+.+++..++.++.++....
T Consensus 110 --~l~~~~IiV~Tpek~~~llr~~~-~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~----------------- 169 (737)
T PRK02362 110 --WLGDNDIIVATSEKVDSLLRNGA-PWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN----------------- 169 (737)
T ss_pred --ccCCCCEEEECHHHHHHHHhcCh-hhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC-----------------
Confidence 11246899999999988887633 4578899999999999987778888888877654311
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccC-------ceeeecC---ccccCCchhhhhhhhhccC
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH-------PLFLTTG---ETRYKLPERLESYKLICES 310 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~ 310 (475)
+..|++++|||+++ ..++....-.. |...... ......+. .........
T Consensus 170 ------------------~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~--~~~~~~~~~ 228 (737)
T PRK02362 170 ------------------PDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD--SQREVEVPS 228 (737)
T ss_pred ------------------CCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc--ccccCCCcc
Confidence 12478999999964 23322211100 1100000 00000000 000000000
Q ss_pred -CCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCC---------------------------------Cceee
Q 011884 311 -KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE---------------------------------LRIKI 356 (475)
Q Consensus 311 -~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~---------------------------------~~~~~ 356 (475)
......+.+.+. .++++||||+|+..|+.+++.|..... ...++
T Consensus 229 ~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gv 306 (737)
T PRK02362 229 KDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGA 306 (737)
T ss_pred chHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCE
Confidence 111222222222 567999999999999999988865321 01368
Q ss_pred EEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEE----ec-----CCCCHHHHHHHhhhccccCCC-
Q 011884 357 KEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD-----KPAYIKTYIHRAGRTARAGQL- 426 (475)
Q Consensus 357 ~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~----~~-----~~~s~~~~~Q~~GR~~R~~~~- 426 (475)
+++||+|+..+|..+++.|++|.++|||||+++++|+|+|..++||. |+ .|.+..+|.||+||+||.|.+
T Consensus 307 a~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~ 386 (737)
T PRK02362 307 AFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDP 386 (737)
T ss_pred EeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCC
Confidence 89999999999999999999999999999999999999999988875 44 578899999999999998866
Q ss_pred -CcEEEEeech
Q 011884 427 -GRCFTLLHKD 436 (475)
Q Consensus 427 -g~~~~~~~~~ 436 (475)
|.++++....
T Consensus 387 ~G~~ii~~~~~ 397 (737)
T PRK02362 387 YGEAVLLAKSY 397 (737)
T ss_pred CceEEEEecCc
Confidence 7777777553
No 37
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2e-40 Score=305.08 Aligned_cols=348 Identities=29% Similarity=0.452 Sum_probs=284.1
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh-------ccccceEEEcccHHHHHHHh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-------VRCLRALVVLPTRDLALQVN 73 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~-------~~~~~vlil~Pt~~L~~q~~ 73 (475)
.|+.+|+|.|.+- ++.+++|++++=.|-||||||++|.+|++-...... ..++..||+||+|+||.|++
T Consensus 188 KGI~~PTpIQvQG----lPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~ 263 (610)
T KOG0341|consen 188 KGIVHPTPIQVQG----LPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTH 263 (610)
T ss_pred cCCCCCCceeecC----cceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHH
Confidence 3788999999886 566677999999999999999999998655443321 25788999999999999987
Q ss_pred hhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCcc
Q 011884 74 SARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 153 (475)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 153 (475)
.-++.+ .......-.+ .++..+-.||.+..++..
T Consensus 264 ~iie~~-------------------------------~~~L~e~g~P--~lRs~LciGG~~v~eql~------------- 297 (610)
T KOG0341|consen 264 DIIEQY-------------------------------VAALQEAGYP--ELRSLLCIGGVPVREQLD------------- 297 (610)
T ss_pred HHHHHH-------------------------------HHHHHhcCCh--hhhhhhhhcCccHHHHHH-------------
Confidence 764443 1111111112 466667778877666643
Q ss_pred CCchhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccc
Q 011884 154 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 233 (475)
Q Consensus 154 ~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ 233 (475)
....+.+|+|+||++|++.+.+ +..++.-.+++++|||+++.+.+|...+..++.....
T Consensus 298 --------~v~~GvHivVATPGRL~DmL~K-K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~------------ 356 (610)
T KOG0341|consen 298 --------VVRRGVHIVVATPGRLMDMLAK-KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKG------------ 356 (610)
T ss_pred --------HHhcCeeEEEcCcchHHHHHHH-hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhh------------
Confidence 3445789999999999999887 4477778899999999999999999999999987665
Q ss_pred cccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCc
Q 011884 234 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLK 313 (475)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (475)
..|.+++|||++..+..+++.-+.+|..+..+...... -++-+...++..+.|
T Consensus 357 --------------------------QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAs-ldViQevEyVkqEaK 409 (610)
T KOG0341|consen 357 --------------------------QRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAAS-LDVIQEVEYVKQEAK 409 (610)
T ss_pred --------------------------hhheeeeeccccHHHHHHHHhhcccceEEecccccccc-hhHHHHHHHHHhhhh
Confidence 23789999999999999999999999888776654332 334455666777788
Q ss_pred HHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCC
Q 011884 314 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 393 (475)
Q Consensus 314 ~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~Gi 393 (475)
...+.+-++.. ..++|||+..+.+.+.+.++|.-.+ +.++.+|||..+++|...++.|+.|+.++||+|++.+.|+
T Consensus 410 iVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKG---VEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGL 485 (610)
T KOG0341|consen 410 IVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKG---VEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGL 485 (610)
T ss_pred hhhHHHHhccC-CCceEEEeccccChHHHHHHHHHcc---ceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccC
Confidence 88888877765 4599999999999999999998665 8999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechh----HHHHHHHHHHhcC
Q 011884 394 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE----VKRFKKLLQKADN 450 (475)
Q Consensus 394 Dip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~----~~~~~~l~~~~~~ 450 (475)
|+|++.+||+|+.|..+..|+||+||.||.|+.|-+.+|++++. +..++.++...++
T Consensus 486 DFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ 546 (610)
T KOG0341|consen 486 DFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQ 546 (610)
T ss_pred CCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999998743 3445666666653
No 38
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=336.53 Aligned_cols=360 Identities=20% Similarity=0.286 Sum_probs=269.3
Q ss_pred CCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh----ccccceEEEcccHHHHHHHhhhhhc
Q 011884 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 3 ~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~----~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
|.+|+|.|.+|+..+. +|.++|+.||||||||.++++|++..+...+ .++-.+||++|-++|.++
T Consensus 20 ~~~~t~~Q~~a~~~i~----~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~D------- 88 (814)
T COG1201 20 FTSLTPPQRYAIPEIH----SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNND------- 88 (814)
T ss_pred cCCCCHHHHHHHHHHh----CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHH-------
Confidence 6789999999877654 5999999999999999999999999988763 234679999999999999
Q ss_pred ccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchh
Q 011884 79 YCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 158 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
+.+.+..+....|+.+.+.+|+++..+...+..+
T Consensus 89 --------------------------------i~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~-------------- 122 (814)
T COG1201 89 --------------------------------IRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKN-------------- 122 (814)
T ss_pred --------------------------------HHHHHHHHHHHcCCccceecCCCChHHhhhccCC--------------
Confidence 5666677777889999999999987777655443
Q ss_pred HHHhhhcCCcEEEeCchHHHHHhhcCC-CcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccc
Q 011884 159 VLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 159 ~~~~~~~~~~Iii~Tp~~l~~~l~~~~-~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
.|||+||||++|.-++...+ ...+.+++.+||||+|.+.+..++.++..-++++.....
T Consensus 123 -------PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~------------- 182 (814)
T COG1201 123 -------PPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG------------- 182 (814)
T ss_pred -------CCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc-------------
Confidence 46999999999987776533 134789999999999999988888887777777655221
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCc---eeeecCccc-cCCchhhhhhh-h--hccC
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP---LFLTTGETR-YKLPERLESYK-L--ICES 310 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~-~--~~~~ 310 (475)
..|.|.+|||..+ ..+..+...... .++...... ..+........ . ....
T Consensus 183 ----------------------~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~ 239 (814)
T COG1201 183 ----------------------DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELW 239 (814)
T ss_pred ----------------------ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchh
Confidence 2378999999974 444443333321 222222211 11100000000 0 1111
Q ss_pred CCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcc
Q 011884 311 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 390 (475)
Q Consensus 311 ~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~ 390 (475)
......+.++++++. .+|||+||+..++.++..|++... ..+..+||.++.+.|.++.++|++|+.+.+|||+.++
T Consensus 240 ~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~--~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLE 315 (814)
T COG1201 240 AALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGP--DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLE 315 (814)
T ss_pred HHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcC--CceeeecccccHHHHHHHHHHHhcCCceEEEEccchh
Confidence 223456666666654 999999999999999999998653 7889999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEecCCCCHHHHHHHhhhccccC-CCCcEEEEe-echhHHHHHHHHHHhcCCCCCccCCChhhhhhh
Q 011884 391 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG-QLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 466 (475)
Q Consensus 391 ~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~-~~g~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
.|||+.+++.||+++.|+++..+.||+||+|+.- ...+++++. +.+|.-...-+.+..........+++.+-++.|
T Consensus 316 LGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVL 393 (814)
T COG1201 316 LGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVL 393 (814)
T ss_pred hccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHH
Confidence 9999999999999999999999999999999854 445666654 445555555555555555555566666555544
No 39
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=4.2e-40 Score=320.09 Aligned_cols=353 Identities=26% Similarity=0.424 Sum_probs=290.7
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 81 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 81 (475)
||..|++.|..| ++.+..+.|+||+|..|+|||++|...+++.+... .-....+|++|||+++-|+...+
T Consensus 44 ~f~~ptkiQaaA----IP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~-~~~~q~~Iv~PTREiaVQI~~tv----- 113 (980)
T KOG4284|consen 44 AFALPTKIQAAA----IPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR-SSHIQKVIVTPTREIAVQIKETV----- 113 (980)
T ss_pred cccCCCchhhhh----hhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-cCcceeEEEecchhhhhHHHHHH-----
Confidence 688999999887 55566689999999999999999999988887654 24457999999999999965544
Q ss_pred cccccccchhhhHHHhhhccccccccchhhHHHHHhhcc-cccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 82 KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAP-AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
..+++ +.+.++.++.||+....+...+.
T Consensus 114 ----------------------------------~~v~~sf~g~~csvfIGGT~~~~d~~rlk----------------- 142 (980)
T KOG4284|consen 114 ----------------------------------RKVAPSFTGARCSVFIGGTAHKLDLIRLK----------------- 142 (980)
T ss_pred ----------------------------------HHhcccccCcceEEEecCchhhhhhhhhh-----------------
Confidence 44433 45899999999998776654432
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHH-HHHHhhHHHHHHhccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 239 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~-~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 239 (475)
.++|+|+||+++..+..... ++.++++++|+|||+.|.+ ..+...+.-|+..++.
T Consensus 143 -----~~rIvIGtPGRi~qL~el~~-~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~------------------ 198 (980)
T KOG4284|consen 143 -----QTRIVIGTPGRIAQLVELGA-MNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQ------------------ 198 (980)
T ss_pred -----hceEEecCchHHHHHHHhcC-CCccceeEEEeccHHhhhchhhHHHHHHHHHHhcch------------------
Confidence 36899999999998888644 8899999999999999986 7788888888888766
Q ss_pred cchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCC-------C
Q 011884 240 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK-------L 312 (475)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 312 (475)
..|.+.+|||.+++.++.....+++|..+........+-..-+..+..+... .
T Consensus 199 --------------------~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrl 258 (980)
T KOG4284|consen 199 --------------------IRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRL 258 (980)
T ss_pred --------------------hheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHH
Confidence 3378999999999999999999999998887776666544333333334332 2
Q ss_pred cHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccC
Q 011884 313 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 392 (475)
Q Consensus 313 ~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~G 392 (475)
|...|.+++...+-.+.||||+....|+-++..|...+ +.+.++.|.|++.+|..+++.+++-..+|||+|+..++|
T Consensus 259 klq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG---~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRG 335 (980)
T KOG4284|consen 259 KLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSG---LDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARG 335 (980)
T ss_pred HHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccC---CCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhcc
Confidence 66777777788888899999999999999999999887 999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeec-hhHHHHH----HHHHHhcCCCCCccCCChhh
Q 011884 393 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK-DEVKRFK----KLLQKADNDSCPIHSIPSSL 462 (475)
Q Consensus 393 iDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~-~~~~~~~----~l~~~~~~~~~~~~~~~~~~ 462 (475)
||-+++++||..+.|.+..+|.||+|||||.|..|.+++|+.+ ++.+-+. ++.......-.|.+++|..+
T Consensus 336 IDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m~~ria~~~~~~~~p~~p~P~~~ 410 (980)
T KOG4284|consen 336 IDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAMAYRIAVTVKRVVEPVHPLPGDL 410 (980)
T ss_pred CCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHHHHHHhhhheeeeccCCCCCccc
Confidence 9999999999999999999999999999999999999999865 4435444 44444444445666776654
No 40
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-40 Score=302.74 Aligned_cols=340 Identities=26% Similarity=0.440 Sum_probs=298.2
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||++|+..|.+|+ .....|.|+.+++.+|+|||.++..++++.+.... +...+++++||++|+.|
T Consensus 44 yGFekPSaIQqraI----~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~-ke~qalilaPtreLa~q--------- 109 (397)
T KOG0327|consen 44 YGFEKPSAIQQRAI----LPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV-KETQALILAPTRELAQQ--------- 109 (397)
T ss_pred hccCCchHHHhccc----cccccCCceeEeeeccccchhhhHHHHHhhcCcch-HHHHHHHhcchHHHHHH---------
Confidence 69999999998874 45556999999999999999999999998875542 33469999999999999
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
..+....++...+.++....|+.....+......
T Consensus 110 ------------------------------i~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~---------------- 143 (397)
T KOG0327|consen 110 ------------------------------IQKVVRALGDHMDVSVHACIGGTNVRREDQALLK---------------- 143 (397)
T ss_pred ------------------------------HHHHHHhhhcccceeeeeecCcccchhhhhhhhc----------------
Confidence 5567778888888999988888877655433222
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
..++|+++||+.+...+... .+....+.+.|+||++..++.++...+..+++.++.
T Consensus 144 ----~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~------------------- 199 (397)
T KOG0327|consen 144 ----DKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPS------------------- 199 (397)
T ss_pred ----cCceeecCCchhHHHhhccc-cccccceeEEeecchHhhhccchHHHHHHHHHHcCc-------------------
Confidence 34799999999999888875 477778999999999999999999999999998876
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHH
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 320 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (475)
..|.+++|||.+.......+..+.+|..+...... ..-+.+++++.....+.|...|..+
T Consensus 200 -------------------~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~-ltl~gikq~~i~v~k~~k~~~l~dl 259 (397)
T KOG0327|consen 200 -------------------DVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE-LTLEGIKQFYINVEKEEKLDTLCDL 259 (397)
T ss_pred -------------------chhheeecccCcHHHHHHHHHhccCceEEEecchh-hhhhheeeeeeeccccccccHHHHH
Confidence 44789999999999999999999999887666555 3356777888888888899999998
Q ss_pred HHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcE
Q 011884 321 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 400 (475)
Q Consensus 321 l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~ 400 (475)
.+ ...+.++||++++.+..+...|..++ .++..+||.|.+.+|..+++.|+.|..++||.|..+++|+|+..++.
T Consensus 260 ~~--~~~q~~if~nt~r~v~~l~~~L~~~~---~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~sl 334 (397)
T KOG0327|consen 260 YR--RVTQAVIFCNTRRKVDNLTDKLRAHG---FTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSL 334 (397)
T ss_pred HH--hhhcceEEecchhhHHHHHHHHhhCC---ceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcce
Confidence 88 46789999999999999999997665 89999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhc
Q 011884 401 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 449 (475)
Q Consensus 401 Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~ 449 (475)
||.|++|.....|.+|+||+||.|..|.++.++...+...++++++.+.
T Consensus 335 vinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~ 383 (397)
T KOG0327|consen 335 VVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYN 383 (397)
T ss_pred eeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcC
Confidence 9999999999999999999999999999999999999999999998875
No 41
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=5.7e-39 Score=343.18 Aligned_cols=328 Identities=20% Similarity=0.229 Sum_probs=238.4
Q ss_pred CCCCcccchhhhhhhhhcCCCCCC--CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~--~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
||| +|++.|.+|+..+...+.++ ++.+++||||||||.+++.+++..+.. +.+++|++||++||.|++++
T Consensus 448 ~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~----g~qvlvLvPT~~LA~Q~~~~--- 519 (926)
T TIGR00580 448 FPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD----GKQVAVLVPTTLLAQQHFET--- 519 (926)
T ss_pred CCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh----CCeEEEEeCcHHHHHHHHHH---
Confidence 578 69999999999998877665 689999999999999999998887754 35799999999999996554
Q ss_pred ccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchh
Q 011884 79 YCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 158 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
+..+....++++..++|..+..+....
T Consensus 520 ------------------------------------f~~~~~~~~i~v~~Lsg~~~~~e~~~~----------------- 546 (926)
T TIGR00580 520 ------------------------------------FKERFANFPVTIELLSRFRSAKEQNEI----------------- 546 (926)
T ss_pred ------------------------------------HHHHhccCCcEEEEEeccccHHHHHHH-----------------
Confidence 444444457788888887664443222
Q ss_pred HHHhhhc-CCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccc
Q 011884 159 VLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 159 ~~~~~~~-~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
...+.. .++|+|+||..+ . +...+.+++++|+||+|++.... ...+..+.
T Consensus 547 -~~~l~~g~~dIVIGTp~ll----~--~~v~f~~L~llVIDEahrfgv~~-----~~~L~~~~----------------- 597 (926)
T TIGR00580 547 -LKELASGKIDILIGTHKLL----Q--KDVKFKDLGLLIIDEEQRFGVKQ-----KEKLKELR----------------- 597 (926)
T ss_pred -HHHHHcCCceEEEchHHHh----h--CCCCcccCCEEEeecccccchhH-----HHHHHhcC-----------------
Confidence 122333 479999999543 2 23567889999999999973221 12222211
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHH
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 317 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 317 (475)
...+.+++|||+.+........+..++..+....... ..+..... .. . ...+
T Consensus 598 ---------------------~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R---~~V~t~v~--~~-~-~~~i 649 (926)
T TIGR00580 598 ---------------------TSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR---LPVRTFVM--EY-D-PELV 649 (926)
T ss_pred ---------------------CCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc---cceEEEEE--ec-C-HHHH
Confidence 1336899999987766555555556655544332211 11111111 11 1 1122
Q ss_pred HHHH-Hh-cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCC
Q 011884 318 VALL-QS-LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 395 (475)
Q Consensus 318 ~~~l-~~-~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDi 395 (475)
...+ .. ..+++++|||++++.++.+++.|++.. ++.++..+||+|+..+|.+++++|++|+.+|||||+++++|+|+
T Consensus 650 ~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~-p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDI 728 (926)
T TIGR00580 650 REAIRRELLRGGQVFYVHNRIESIEKLATQLRELV-PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDI 728 (926)
T ss_pred HHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccc
Confidence 2222 11 257899999999999999999999853 24789999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCC-CHHHHHHHhhhccccCCCCcEEEEeec------hhHHHHHHHHHH
Q 011884 396 EGVNNVVNYDKPA-YIKTYIHRAGRTARAGQLGRCFTLLHK------DEVKRFKKLLQK 447 (475)
Q Consensus 396 p~~~~Vv~~~~~~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~------~~~~~~~~l~~~ 447 (475)
|++++||+++.+. +...|.|++||+||.++.|.|++++.. ...++++-+.+.
T Consensus 729 p~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 729 PNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred ccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 9999999998864 677999999999999999999999854 344555555443
No 42
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-40 Score=336.09 Aligned_cols=350 Identities=30% Similarity=0.470 Sum_probs=295.4
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh----ccccceEEEcccHHHHHHHhhhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLPTRDLALQVNSAR 76 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~----~~~~~vlil~Pt~~L~~q~~~~~ 76 (475)
|||.+|+|.|.+|| +++.+|+++|-.|.||||||++|++|++.++..+. .+||-+||++||++|+.|+.+
T Consensus 383 l~y~k~~~IQ~qAi----P~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r-- 456 (997)
T KOG0334|consen 383 LGYEKPTPIQAQAI----PAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHR-- 456 (997)
T ss_pred hcCCCCcchhhhhc----chhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHH--
Confidence 68999999999975 55566999999999999999999999997765432 257889999999999999544
Q ss_pred hcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCc
Q 011884 77 CKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 156 (475)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (475)
.+..+...+++.+++.+|++....++..
T Consensus 457 -------------------------------------~~~kf~k~l~ir~v~vygg~~~~~qiae--------------- 484 (997)
T KOG0334|consen 457 -------------------------------------EVRKFLKLLGIRVVCVYGGSGISQQIAE--------------- 484 (997)
T ss_pred -------------------------------------HHHHHHhhcCceEEEecCCccHHHHHHH---------------
Confidence 4555556689999999999998888764
Q ss_pred hhHHHhhhcCCcEEEeCchHHHHHhhc--CCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccc
Q 011884 157 EDVLQELQSAVDILVATPGRLMDHINA--TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 234 (475)
Q Consensus 157 ~~~~~~~~~~~~Iii~Tp~~l~~~l~~--~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 234 (475)
+.+++.|+|+||+++++.+-. ++..++..+-++|+||++++.+.+|.+.+..|++.++.
T Consensus 485 ------lkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrp------------- 545 (997)
T KOG0334|consen 485 ------LKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRP------------- 545 (997)
T ss_pred ------HhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcch-------------
Confidence 445679999999999988654 33344555569999999999988888887777776632
Q ss_pred ccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhcc-CCCc
Q 011884 235 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLK 313 (475)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 313 (475)
..|.+++|||++.....++..-++.|+.+..... ..+...+.+.+..+. ...|
T Consensus 546 -------------------------drQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~-svV~k~V~q~v~V~~~e~eK 599 (997)
T KOG0334|consen 546 -------------------------DRQTVLFSATFPRSMEALARKVLKKPVEIIVGGR-SVVCKEVTQVVRVCAIENEK 599 (997)
T ss_pred -------------------------hhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccc-eeEeccceEEEEEecCchHH
Confidence 4588999999999888888877787776555533 345566666666666 7789
Q ss_pred HHHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccC
Q 011884 314 PLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 392 (475)
Q Consensus 314 ~~~l~~~l~~~-~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~G 392 (475)
+..|.+++.+. ..+++||||.+.+.|..+.+.|.+.+ +.+..+||+-++.+|+..+++|+++..++|++|+.+.+|
T Consensus 600 f~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag---~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarG 676 (997)
T KOG0334|consen 600 FLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAG---YNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARG 676 (997)
T ss_pred HHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcC---cchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcc
Confidence 99999988654 57899999999999999999999766 787889999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCCCCCcc
Q 011884 393 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIH 456 (475)
Q Consensus 393 iDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 456 (475)
+|++.+.+||+|+.|.....|++|+||+||.|+.|.+++|+..++.+....|.+.++.+.++..
T Consensus 677 Ldv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P 740 (997)
T KOG0334|consen 677 LDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVP 740 (997)
T ss_pred cccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCc
Confidence 9999999999999999999999999999999999999999999999999999999976665444
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.7e-39 Score=343.43 Aligned_cols=358 Identities=20% Similarity=0.246 Sum_probs=242.7
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+|+|.+|+... +.+++++++++|||||||+++.++++..+... +.++||++|+++|+.|+++.
T Consensus 19 ~g~~~l~~~Q~~ai~~~---~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~~~l~l~P~~aLa~q~~~~----- 87 (720)
T PRK00254 19 RGIEELYPPQAEALKSG---VLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE---GGKAVYLVPLKALAEEKYRE----- 87 (720)
T ss_pred CCCCCCCHHHHHHHHHH---HhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHHHHHHHH-----
Confidence 58999999999997642 34689999999999999999999998877643 45899999999999996544
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
+..+. ..+.++..++|+......
T Consensus 88 ----------------------------------~~~~~-~~g~~v~~~~Gd~~~~~~---------------------- 110 (720)
T PRK00254 88 ----------------------------------FKDWE-KLGLRVAMTTGDYDSTDE---------------------- 110 (720)
T ss_pred ----------------------------------HHHHh-hcCCEEEEEeCCCCCchh----------------------
Confidence 33332 247888888888653221
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
....++|+|+||+++..+++.. ...+++++++|+||+|.+.+.+++..++.++..+..
T Consensus 111 --~~~~~~IiV~Tpe~~~~ll~~~-~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~------------------- 168 (720)
T PRK00254 111 --WLGKYDIIIATAEKFDSLLRHG-SSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLG------------------- 168 (720)
T ss_pred --hhccCCEEEEcHHHHHHHHhCC-chhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCc-------------------
Confidence 1134699999999998877653 356789999999999999877778888888776532
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchh-hhhhhhhccCC--C-----
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER-LESYKLICESK--L----- 312 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~----- 312 (475)
..+++++|||+++ ..++... +....+... ......... ..+........ .
T Consensus 169 -------------------~~qiI~lSATl~n-~~~la~w-l~~~~~~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T PRK00254 169 -------------------RAQILGLSATVGN-AEELAEW-LNAELVVSD-WRPVKLRKGVFYQGFLFWEDGKIERFPNS 226 (720)
T ss_pred -------------------CCcEEEEEccCCC-HHHHHHH-hCCccccCC-CCCCcceeeEecCCeeeccCcchhcchHH
Confidence 2378999999964 3444332 221111110 000000000 00000000100 0
Q ss_pred cHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcC----------------------C--------CceeeEEeccc
Q 011884 313 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG----------------------E--------LRIKIKEYSGL 362 (475)
Q Consensus 313 ~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~----------------------~--------~~~~~~~~~g~ 362 (475)
....+.+.+. .++++||||+|+..|+.++..+.... . ...++.++||+
T Consensus 227 ~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHag 304 (720)
T PRK00254 227 WESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAG 304 (720)
T ss_pred HHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCC
Confidence 1122334343 36799999999999998887664310 0 11358999999
Q ss_pred cCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEE-------ecCC-CCHHHHHHHhhhccccC--CCCcEEEE
Q 011884 363 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN-------YDKP-AYIKTYIHRAGRTARAG--QLGRCFTL 432 (475)
Q Consensus 363 ~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~-------~~~~-~s~~~~~Q~~GR~~R~~--~~g~~~~~ 432 (475)
|+..+|..+++.|++|..+|||||+++++|+|+|..++||. ++.+ .+..+|.||+||+||.| ..|.++++
T Consensus 305 l~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~ 384 (720)
T PRK00254 305 LGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIV 384 (720)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEE
Confidence 99999999999999999999999999999999999888874 3332 25779999999999975 45888888
Q ss_pred eechhH-HHHHHHHHHhcCCCCCccCCChhhhhhhhccccc
Q 011884 433 LHKDEV-KRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 472 (475)
Q Consensus 433 ~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
...++. +.++++...--..-.+..+.++.+.+.+..+..+
T Consensus 385 ~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~ 425 (720)
T PRK00254 385 ATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITN 425 (720)
T ss_pred ecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHh
Confidence 766542 3344443221111123345556666665554433
No 44
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-39 Score=314.14 Aligned_cols=352 Identities=30% Similarity=0.425 Sum_probs=282.9
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh----ccccceEEEcccHHHHHHHhhhhh
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLPTRDLALQVNSARC 77 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~----~~~~~vlil~Pt~~L~~q~~~~~~ 77 (475)
||..|+|.|.+| ++.++.+++++.|||||||||++|.+|++..+.... ..+-+++|+.||++|+.|+++++.
T Consensus 155 ~F~~Pt~iq~~a----ipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~ 230 (593)
T KOG0344|consen 155 GFDEPTPIQKQA----IPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMR 230 (593)
T ss_pred CCCCCCcccchh----hhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHH
Confidence 789999999986 555666999999999999999999999999987765 456789999999999999888877
Q ss_pred cccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCch
Q 011884 78 KYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 157 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (475)
++..+ .....++..+.........
T Consensus 231 k~~~~-------------------------------------~~t~~~a~~~~~~~~~~qk------------------- 254 (593)
T KOG0344|consen 231 KYSID-------------------------------------EGTSLRAAQFSKPAYPSQK------------------- 254 (593)
T ss_pred hcCCC-------------------------------------CCCchhhhhcccccchhhc-------------------
Confidence 76422 1122222222222111100
Q ss_pred hHHHhhhcCCcEEEeCchHHHHHhhcCC-CcccCCccEEEEcchHHHHHH-HHHhhHHHHHHhccccccccccccccccc
Q 011884 158 DVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLP 235 (475)
Q Consensus 158 ~~~~~~~~~~~Iii~Tp~~l~~~l~~~~-~~~~~~~~~lVvDE~H~l~~~-~~~~~i~~i~~~~~~~~~~~~~~~~~~~~ 235 (475)
-.......++++|+||-.+..++.... ...++.+..+|+||++.+.+. .+..++..|+....+
T Consensus 255 -~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s-------------- 319 (593)
T KOG0344|consen 255 -PAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS-------------- 319 (593)
T ss_pred -cchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC--------------
Confidence 000111235899999999988887643 356889999999999999988 888888888887655
Q ss_pred cccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhh-hhhccCCCcH
Q 011884 236 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY-KLICESKLKP 314 (475)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 314 (475)
+.+..-++|||.+..+++++.........+.++...... ..+.+. ........|.
T Consensus 320 -----------------------~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~-~~V~QelvF~gse~~K~ 375 (593)
T KOG0344|consen 320 -----------------------PDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSAN-ETVDQELVFCGSEKGKL 375 (593)
T ss_pred -----------------------cchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHh-hhhhhhheeeecchhHH
Confidence 233556889999999999999888877766655543332 334443 3444566788
Q ss_pred HHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCC
Q 011884 315 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 394 (475)
Q Consensus 315 ~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiD 394 (475)
..+.+++...-..++|||+.+.+.|.++...|... .++++.++||..++.+|.+.+++|+.|++++|+||+++++|+|
T Consensus 376 lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~--~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiD 453 (593)
T KOG0344|consen 376 LALRQLVASGFKPPVLIFVQSKERAKQLFEELEIY--DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGID 453 (593)
T ss_pred HHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhc--cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhcccc
Confidence 88888888777779999999999999999999532 2489999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCCCCC
Q 011884 395 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCP 454 (475)
Q Consensus 395 ip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 454 (475)
+.+++.||++|.|.+...|++|+||.||.|+.|.+++|+.+.+...++.++.-.+.++|.
T Consensus 454 f~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~e 513 (593)
T KOG0344|consen 454 FKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCE 513 (593)
T ss_pred ccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCc
Confidence 999999999999999999999999999999999999999999999999999999888764
No 45
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=7.7e-38 Score=330.30 Aligned_cols=328 Identities=18% Similarity=0.210 Sum_probs=232.6
Q ss_pred CCCCcccchhhhhhhhhcCCCCCC--CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~--~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
++| +|++.|.+|+..+...+..+ ++.|++||||||||.+|+++++..+.. +.+++|++||++||.|+
T Consensus 258 l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~----g~q~lilaPT~~LA~Q~------ 326 (681)
T PRK10917 258 LPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA----GYQAALMAPTEILAEQH------ 326 (681)
T ss_pred CCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEeccHHHHHHH------
Confidence 467 69999999999998877654 589999999999999999999887643 45799999999999994
Q ss_pred ccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchh
Q 011884 79 YCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 158 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
.+.++++....++++.+++|+.+..+....+
T Consensus 327 ---------------------------------~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~---------------- 357 (681)
T PRK10917 327 ---------------------------------YENLKKLLEPLGIRVALLTGSLKGKERREIL---------------- 357 (681)
T ss_pred ---------------------------------HHHHHHHHhhcCcEEEEEcCCCCHHHHHHHH----------------
Confidence 4455556666689999999998765553322
Q ss_pred HHHhhhc-CCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccc
Q 011884 159 VLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 159 ~~~~~~~-~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
..+.. .++|+|+||..+.+ ...+.+++++|+||+|++....+.. +... .
T Consensus 358 --~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hrfg~~qr~~----l~~~-~----------------- 407 (681)
T PRK10917 358 --EAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHRFGVEQRLA----LREK-G----------------- 407 (681)
T ss_pred --HHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhhhhHHHHHH----HHhc-C-----------------
Confidence 12223 47999999987642 2456789999999999984333221 1110 0
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHH
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 317 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 317 (475)
...+.+++|||+.+....+...+..+...+..... ....+... .....+...+
T Consensus 408 ---------------------~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~---~r~~i~~~---~~~~~~~~~~ 460 (681)
T PRK10917 408 ---------------------ENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPP---GRKPITTV---VIPDSRRDEV 460 (681)
T ss_pred ---------------------CCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCC---CCCCcEEE---EeCcccHHHH
Confidence 02367999999876544333222222222211111 01111111 1112222233
Q ss_pred HHHHHh--cCCCeEEEEcCChH--------HHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC
Q 011884 318 VALLQS--LGEEKCIVFTSSVE--------STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 387 (475)
Q Consensus 318 ~~~l~~--~~~~~~lvf~~s~~--------~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~ 387 (475)
.+.+.. ..+++++|||+.++ .+..+++.|.+.. .+.++..+||+|+..+|.+++++|++|+.+|||||+
T Consensus 461 ~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~ 539 (681)
T PRK10917 461 YERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAF-PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT 539 (681)
T ss_pred HHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHC-CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc
Confidence 333322 25679999999654 4566777777653 137899999999999999999999999999999999
Q ss_pred CcccCCCCCCCcEEEEecCCC-CHHHHHHHhhhccccCCCCcEEEEeec----hhHHHHHHHHH
Q 011884 388 AMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAGQLGRCFTLLHK----DEVKRFKKLLQ 446 (475)
Q Consensus 388 ~~~~GiDip~~~~Vv~~~~~~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~----~~~~~~~~l~~ 446 (475)
++++|+|+|++++||+++.+. +...+.|++||+||.|..|.|++++.. ...+.++-+.+
T Consensus 540 vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~ 603 (681)
T PRK10917 540 VIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRE 603 (681)
T ss_pred ceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHH
Confidence 999999999999999999986 578999999999999999999999853 34455555544
No 46
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=9.2e-38 Score=327.70 Aligned_cols=318 Identities=17% Similarity=0.218 Sum_probs=224.9
Q ss_pred CCCCcccchhhhhhhhhcCCCCCC--CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~--~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
++| +|++.|.+|+..+...+... .+.+++||||||||.+|+++++..+.. +.++++++||++||.|+++
T Consensus 232 lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~----g~qvlilaPT~~LA~Q~~~---- 302 (630)
T TIGR00643 232 LPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA----GYQVALMAPTEILAEQHYN---- 302 (630)
T ss_pred CCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc----CCcEEEECCHHHHHHHHHH----
Confidence 467 79999999999988866443 478999999999999999998887653 4579999999999999544
Q ss_pred ccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchh
Q 011884 79 YCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 158 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
.+..+....++++.+++|+.........+
T Consensus 303 -----------------------------------~~~~l~~~~gi~v~lltg~~~~~~r~~~~---------------- 331 (630)
T TIGR00643 303 -----------------------------------SLRNLLAPLGIEVALLTGSLKGKRRKELL---------------- 331 (630)
T ss_pred -----------------------------------HHHHHhcccCcEEEEEecCCCHHHHHHHH----------------
Confidence 45555555689999999998765543222
Q ss_pred HHHhhh-cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccc
Q 011884 159 VLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 159 ~~~~~~-~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
..+. ..++|+|+||..+.+ ...+.+++++|+||+|++....+. .+.......
T Consensus 332 --~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~fg~~qr~----~l~~~~~~~--------------- 384 (630)
T TIGR00643 332 --ETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRFGVEQRK----KLREKGQGG--------------- 384 (630)
T ss_pred --HHHhCCCCCEEEecHHHHhc------cccccccceEEEechhhccHHHHH----HHHHhcccC---------------
Confidence 1222 247999999987743 245678999999999987433322 111111000
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHH
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 317 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 317 (475)
...+.+++|||+.+....+...+..+........ .....+.... .....+ ..+
T Consensus 385 ---------------------~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p---~~r~~i~~~~--~~~~~~-~~~ 437 (630)
T TIGR00643 385 ---------------------FTPHVLVMSATPIPRTLALTVYGDLDTSIIDELP---PGRKPITTVL--IKHDEK-DIV 437 (630)
T ss_pred ---------------------CCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCC---CCCCceEEEE--eCcchH-HHH
Confidence 1236799999987654333221111111111100 0001111111 111112 333
Q ss_pred HHHHHhc--CCCeEEEEcCCh--------HHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC
Q 011884 318 VALLQSL--GEEKCIVFTSSV--------ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 387 (475)
Q Consensus 318 ~~~l~~~--~~~~~lvf~~s~--------~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~ 387 (475)
...+.+. .+.+++|||+.. ..++.+++.|.+.. .+..+..+||+|+..+|.++++.|++|+.+|||||+
T Consensus 438 ~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~ 516 (630)
T TIGR00643 438 YEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF-PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT 516 (630)
T ss_pred HHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhC-CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc
Confidence 3333322 567999999876 45667777777643 357899999999999999999999999999999999
Q ss_pred CcccCCCCCCCcEEEEecCCC-CHHHHHHHhhhccccCCCCcEEEEe
Q 011884 388 AMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAGQLGRCFTLL 433 (475)
Q Consensus 388 ~~~~GiDip~~~~Vv~~~~~~-s~~~~~Q~~GR~~R~~~~g~~~~~~ 433 (475)
++++|||+|++++||+++.+. +...+.|++||+||.|+.|.|++++
T Consensus 517 vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 517 VIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred eeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 999999999999999999886 6889999999999999999999998
No 47
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-39 Score=299.74 Aligned_cols=342 Identities=31% Similarity=0.438 Sum_probs=299.2
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 81 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 81 (475)
||+.|+|.|++ .++.++.+++++--+-||||||.++++||++.+......+.++++++||++|+.|
T Consensus 40 g~~~ptpiqRK----TipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~q---------- 105 (529)
T KOG0337|consen 40 GFNTPTPIQRK----TIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQ---------- 105 (529)
T ss_pred hcCCCCchhcc----cccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHH----------
Confidence 78999999977 5777778999999999999999999999999998876667899999999999999
Q ss_pred cccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHH
Q 011884 82 KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (475)
..+..++++.+++++..+++|+.+..++...
T Consensus 106 -----------------------------tlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~-------------------- 136 (529)
T KOG0337|consen 106 -----------------------------TLKVVKDLGRGTKLRQSLLVGGDSIEEQFIL-------------------- 136 (529)
T ss_pred -----------------------------HHHHHHHhccccchhhhhhcccchHHHHHHH--------------------
Confidence 7888899999999999999999887777654
Q ss_pred hhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccc
Q 011884 162 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 241 (475)
Q Consensus 162 ~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (475)
+..++||+++||+.+....-. ....++.+.+|||||++.+.+++|.+++..++.++..
T Consensus 137 -l~~npDii~ATpgr~~h~~ve-m~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~-------------------- 194 (529)
T KOG0337|consen 137 -LNENPDIIIATPGRLLHLGVE-MTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPE-------------------- 194 (529)
T ss_pred -hccCCCEEEecCceeeeeehh-eeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCC--------------------
Confidence 344679999999998654333 2367899999999999999999999999999988765
Q ss_pred hhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHHH
Q 011884 242 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 321 (475)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 321 (475)
..|.+++|||++...-+..+.++.+|..+..... ..+.+..+..+..+....|...|..++
T Consensus 195 ------------------~~QTllfSatlp~~lv~fakaGl~~p~lVRldve-tkise~lk~~f~~~~~a~K~aaLl~il 255 (529)
T KOG0337|consen 195 ------------------SRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVE-TKISELLKVRFFRVRKAEKEAALLSIL 255 (529)
T ss_pred ------------------cceEEEEeccCchhhHHHHHccCCCCceEEeehh-hhcchhhhhheeeeccHHHHHHHHHHH
Confidence 2278999999999988999999999988774333 356677777888888999999999988
Q ss_pred Hhc-CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcE
Q 011884 322 QSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 400 (475)
Q Consensus 322 ~~~-~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~ 400 (475)
... ...+++||++++.+++.+...+...+ +.+..++|.|.+.-|..-+.+|..++..+|+.|+...+|+|+|.++.
T Consensus 256 ~~~~~~~~t~vf~~tk~hve~~~~ll~~~g---~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 256 GGRIKDKQTIVFVATKHHVEYVRGLLRDFG---GEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred hccccccceeEEecccchHHHHHHHHHhcC---CCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccc
Confidence 766 33579999999999999999999876 88889999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcC
Q 011884 401 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 450 (475)
Q Consensus 401 Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~ 450 (475)
||.|+.|.....|++|+||+.|.|..|..+.++...+...+-.+--.+..
T Consensus 333 vinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 333 VINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred cccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 99999999999999999999999999999999988887777666555543
No 48
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2e-37 Score=339.59 Aligned_cols=310 Identities=21% Similarity=0.261 Sum_probs=215.4
Q ss_pred EECCCCCchhHHhHHHHHHHHhhhh---------ccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhh
Q 011884 29 INSPTGSGKTLSYALPIVQTLSNRA---------VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQ 99 (475)
Q Consensus 29 i~a~tGsGKT~~~~~~~~~~l~~~~---------~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (475)
|+||||||||++|++|++..+.... .++.++|||+|+++|+.|+++++++....
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~----------------- 63 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKG----------------- 63 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHh-----------------
Confidence 5799999999999999998886532 13568999999999999988776543100
Q ss_pred ccccccccchhhHHHHHhhc-ccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHH
Q 011884 100 FDSLLFISLPQVKDVFAAIA-PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 178 (475)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~ 178 (475)
+......++ ...++++...+|+++..+..... .+.++|+|+||+++.
T Consensus 64 -----------i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll---------------------~~ppdILVTTPEsL~ 111 (1490)
T PRK09751 64 -----------IADERRRRGETEVNLRVGIRTGDTPAQERSKLT---------------------RNPPDILITTPESLY 111 (1490)
T ss_pred -----------hhhhhhhcccccCceEEEEEECCCCHHHHHHHh---------------------cCCCCEEEecHHHHH
Confidence 111111222 23478999999998876664432 235699999999998
Q ss_pred HHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhhhccccccCCCCCCc
Q 011884 179 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 258 (475)
Q Consensus 179 ~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (475)
.++.+.....++++++|||||+|.+.+..++.++...++++.....
T Consensus 112 ~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~---------------------------------- 157 (1490)
T PRK09751 112 LMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH---------------------------------- 157 (1490)
T ss_pred HHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC----------------------------------
Confidence 8776533346899999999999999876677777777766543211
Q ss_pred cchheeeeceeeccCccccccccc-cCceeeecCccccCCchhhhhhhhh-----cc--------------CCCcHHHH-
Q 011884 259 PRLVKMVLSATLTQDPNKLAQLDL-HHPLFLTTGETRYKLPERLESYKLI-----CE--------------SKLKPLYL- 317 (475)
Q Consensus 259 ~~~~~i~~SaT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--------------~~~~~~~l- 317 (475)
...|.|++|||+.+ ..++..... ..+..+......... .+...... .. .......+
T Consensus 158 ~~~QrIgLSATI~n-~eevA~~L~g~~pv~Iv~~~~~r~~--~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 158 TSAQRIGLSATVRS-ASDVAAFLGGDRPVTVVNPPAMRHP--QIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred CCCeEEEEEeeCCC-HHHHHHHhcCCCCEEEECCCCCccc--ceEEEEecCchhhccccccccccccchhhhhhhhHHHH
Confidence 12478999999976 344433222 223222111111100 00000000 00 00001111
Q ss_pred HHHHHh-cCCCeEEEEcCChHHHHHHHHHHhhcCCC------------------------------ceeeEEeccccCHH
Q 011884 318 VALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGEL------------------------------RIKIKEYSGLQRQS 366 (475)
Q Consensus 318 ~~~l~~-~~~~~~lvf~~s~~~~~~l~~~l~~~~~~------------------------------~~~~~~~~g~~~~~ 366 (475)
..++.. ..+.++||||+|+..|+.++..|++.... ...+..|||+++.+
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 122222 14578999999999999999999764210 12256899999999
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccC
Q 011884 367 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 424 (475)
Q Consensus 367 ~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~ 424 (475)
+|..+++.|++|+.++||||++++.|||++++++||+++.|.|+.+|+||+||+||..
T Consensus 315 eR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~ 372 (1490)
T PRK09751 315 QRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQV 372 (1490)
T ss_pred HHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999963
No 49
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.1e-37 Score=306.86 Aligned_cols=334 Identities=22% Similarity=0.302 Sum_probs=251.3
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
||+..+++.|.+++..++ +++++++.+|||+||+++|.+|++-. .+-+|||+|-.+|-.+..+.++..
T Consensus 13 fGy~~FR~gQ~evI~~~l----~g~d~lvvmPTGgGKSlCyQiPAll~-------~G~TLVVSPLiSLM~DQV~~l~~~- 80 (590)
T COG0514 13 FGYASFRPGQQEIIDALL----SGKDTLVVMPTGGGKSLCYQIPALLL-------EGLTLVVSPLISLMKDQVDQLEAA- 80 (590)
T ss_pred hCccccCCCHHHHHHHHH----cCCcEEEEccCCCCcchHhhhHHHhc-------CCCEEEECchHHHHHHHHHHHHHc-
Confidence 799999999998766554 58999999999999999999998752 226999999999998766655443
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
|+.+..+.+..+..+... +.
T Consensus 81 ------------------------------------------Gi~A~~lnS~l~~~e~~~------------------v~ 100 (590)
T COG0514 81 ------------------------------------------GIRAAYLNSTLSREERQQ------------------VL 100 (590)
T ss_pred ------------------------------------------CceeehhhcccCHHHHHH------------------HH
Confidence 677777776655444422 22
Q ss_pred HhhhcC-CcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHH--HHhhHHHHHHhccccccccccccccccccc
Q 011884 161 QELQSA-VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 161 ~~~~~~-~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~--~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
..+..+ .++++-+|+++..--.. ..+.-..+.+++|||||+++.++ |++....+-.....
T Consensus 101 ~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~---------------- 163 (590)
T COG0514 101 NQLKSGQLKLLYISPERLMSPRFL-ELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAG---------------- 163 (590)
T ss_pred HHHhcCceeEEEECchhhcChHHH-HHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhh----------------
Confidence 233333 68999999998542111 01224568999999999997664 55444444333221
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccCccc--cccccccCceeeecCccccCCchhhhhhhhhccCCCcHH
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL 315 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (475)
++..+.+.+|||..+.+.. ...+.+..+..+.....++.+.-.+... .....+..
T Consensus 164 --------------------~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~---~~~~~q~~ 220 (590)
T COG0514 164 --------------------LPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEK---GEPSDQLA 220 (590)
T ss_pred --------------------CCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhc---ccHHHHHH
Confidence 2345789999998887666 3455666665665555554442111111 11223333
Q ss_pred HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCC
Q 011884 316 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 395 (475)
Q Consensus 316 ~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDi 395 (475)
.+.+ +.....+..||||.|+..++.++++|.+.+ +++..|||||+..+|+.+.++|..++.+|+|||.++++|||-
T Consensus 221 fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g---~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdK 296 (590)
T COG0514 221 FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNG---ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDK 296 (590)
T ss_pred HHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHCC---CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCC
Confidence 3333 224556778999999999999999999875 999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcC
Q 011884 396 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 450 (475)
Q Consensus 396 p~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~ 450 (475)
|++++||++++|.|+..|.|-+|||||.|.+..|++++...|....+.+++..+.
T Consensus 297 pdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 297 PDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred CCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999888888877653
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=6.5e-37 Score=334.13 Aligned_cols=317 Identities=17% Similarity=0.167 Sum_probs=231.4
Q ss_pred CCCCcccchhhhhhhhhcCCCCCC--CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~--~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
|+| .|++.|.+|+..++..+.+. ++++++|+||+|||.+++.+++..+. ++.+++|++||++||.|+++.|
T Consensus 597 ~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~----~g~qvlvLvPT~eLA~Q~~~~f-- 669 (1147)
T PRK10689 597 FPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE----NHKQVAVLVPTTLLAQQHYDNF-- 669 (1147)
T ss_pred CCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH----cCCeEEEEeCcHHHHHHHHHHH--
Confidence 567 79999999999888866554 78999999999999999887776553 3558999999999999965553
Q ss_pred ccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchh
Q 011884 79 YCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 158 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
.......++++.+++|+.+..++...+
T Consensus 670 -------------------------------------~~~~~~~~v~i~~l~g~~s~~e~~~il---------------- 696 (1147)
T PRK10689 670 -------------------------------------RDRFANWPVRIEMLSRFRSAKEQTQIL---------------- 696 (1147)
T ss_pred -------------------------------------HHhhccCCceEEEEECCCCHHHHHHHH----------------
Confidence 333333467888888877665554322
Q ss_pred HHHhhh-cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccc
Q 011884 159 VLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 159 ~~~~~~-~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
..+. ..++|+|+||+.+. ....+.+++++|+||+|++.... ...+..+.
T Consensus 697 --~~l~~g~~dIVVgTp~lL~------~~v~~~~L~lLVIDEahrfG~~~-----~e~lk~l~----------------- 746 (1147)
T PRK10689 697 --AEAAEGKIDILIGTHKLLQ------SDVKWKDLGLLIVDEEHRFGVRH-----KERIKAMR----------------- 746 (1147)
T ss_pred --HHHHhCCCCEEEECHHHHh------CCCCHhhCCEEEEechhhcchhH-----HHHHHhcC-----------------
Confidence 1222 24799999997542 23556789999999999973221 12222211
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHH
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 317 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 317 (475)
+..+.+++|||+.+....+...++.++..+....... ..++...... ......
T Consensus 747 ---------------------~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r---~~v~~~~~~~---~~~~~k 799 (1147)
T PRK10689 747 ---------------------ADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR---LAVKTFVREY---DSLVVR 799 (1147)
T ss_pred ---------------------CCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC---CCceEEEEec---CcHHHH
Confidence 1347899999998877776666777776655433211 1111111111 111111
Q ss_pred HHHHHh-cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCC
Q 011884 318 VALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 396 (475)
Q Consensus 318 ~~~l~~-~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip 396 (475)
..++.+ ..+++++|||++++.++.+++.|.+.. ++.++..+||+|+..+|++++.+|++|+.+|||||+++++|+|+|
T Consensus 800 ~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~-p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP 878 (1147)
T PRK10689 800 EAILREILRGGQVYYLYNDVENIQKAAERLAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 878 (1147)
T ss_pred HHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC-CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccc
Confidence 122222 246799999999999999999998863 236889999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCC-CCHHHHHHHhhhccccCCCCcEEEEeec
Q 011884 397 GVNNVVNYDKP-AYIKTYIHRAGRTARAGQLGRCFTLLHK 435 (475)
Q Consensus 397 ~~~~Vv~~~~~-~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 435 (475)
++++||+.+.. .+...|.|++||+||.++.|.|++++..
T Consensus 879 ~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 879 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 99999976653 4677899999999999999999998754
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1e-36 Score=324.16 Aligned_cols=331 Identities=21% Similarity=0.245 Sum_probs=225.2
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 81 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 81 (475)
|| +|+++|.+|+..+ .++++++++||||||||+++.++++..+.. +.++++++|+++|+.|.++++
T Consensus 20 ~~-~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~----~~k~v~i~P~raLa~q~~~~~----- 85 (674)
T PRK01172 20 DF-ELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLA----GLKSIYIVPLRSLAMEKYEEL----- 85 (674)
T ss_pred CC-CCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHh----CCcEEEEechHHHHHHHHHHH-----
Confidence 56 4999999998764 468999999999999999999988887654 347999999999999965543
Q ss_pred cccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHH
Q 011884 82 KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (475)
..+. ..+.++...+|+......
T Consensus 86 ----------------------------------~~l~-~~g~~v~~~~G~~~~~~~----------------------- 107 (674)
T PRK01172 86 ----------------------------------SRLR-SLGMRVKISIGDYDDPPD----------------------- 107 (674)
T ss_pred ----------------------------------HHHh-hcCCeEEEEeCCCCCChh-----------------------
Confidence 3322 246777777777543221
Q ss_pred hhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccc
Q 011884 162 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 241 (475)
Q Consensus 162 ~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (475)
....++|+|+||+++..++.... ..+++++++|+||+|.+.+.+++..++.++..+....
T Consensus 108 -~~~~~dIiv~Tpek~~~l~~~~~-~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~------------------ 167 (674)
T PRK01172 108 -FIKRYDVVILTSEKADSLIHHDP-YIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN------------------ 167 (674)
T ss_pred -hhccCCEEEECHHHHHHHHhCCh-hHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC------------------
Confidence 11246999999999887776533 4578899999999999977777777777776543211
Q ss_pred hhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhh-hhhhcc-CCCcHHHHHH
Q 011884 242 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES-YKLICE-SKLKPLYLVA 319 (475)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~~ 319 (475)
+..+++++|||+++ ..++... +....+. ...........+.. ...... .......+..
T Consensus 168 -----------------~~~riI~lSATl~n-~~~la~w-l~~~~~~-~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~ 227 (674)
T PRK01172 168 -----------------PDARILALSATVSN-ANELAQW-LNASLIK-SNFRPVPLKLGILYRKRLILDGYERSQVDINS 227 (674)
T ss_pred -----------------cCCcEEEEeCccCC-HHHHHHH-hCCCccC-CCCCCCCeEEEEEecCeeeecccccccccHHH
Confidence 13478999999964 3333322 1111110 00000000000000 000000 0011111223
Q ss_pred HHHh--cCCCeEEEEcCChHHHHHHHHHHhhcCCC----------------------ceeeEEeccccCHHHHHHHHHHH
Q 011884 320 LLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGEL----------------------RIKIKEYSGLQRQSVRSKTLKAF 375 (475)
Q Consensus 320 ~l~~--~~~~~~lvf~~s~~~~~~l~~~l~~~~~~----------------------~~~~~~~~g~~~~~~r~~~~~~f 375 (475)
++.+ ..++++||||+++..++.+++.|.+.... ..++.++||+|+..+|..+++.|
T Consensus 228 ~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f 307 (674)
T PRK01172 228 LIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMF 307 (674)
T ss_pred HHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHH
Confidence 3332 25679999999999999999988764210 12588999999999999999999
Q ss_pred HcCCeEEEEEcCCcccCCCCCCCcEEEEecC---------CCCHHHHHHHhhhccccCCC--CcEEEEeech-hHHHHHH
Q 011884 376 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDK---------PAYIKTYIHRAGRTARAGQL--GRCFTLLHKD-EVKRFKK 443 (475)
Q Consensus 376 ~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~---------~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~-~~~~~~~ 443 (475)
++|..+|||||+++++|+|+|+.. ||+.+. |.++.+|.||+||+||.|.+ |.++++.... +.+.+++
T Consensus 308 ~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~ 386 (674)
T PRK01172 308 RNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKK 386 (674)
T ss_pred HcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHH
Confidence 999999999999999999999854 444432 45788999999999998854 5566665443 3555666
Q ss_pred HH
Q 011884 444 LL 445 (475)
Q Consensus 444 l~ 445 (475)
++
T Consensus 387 ~l 388 (674)
T PRK01172 387 YL 388 (674)
T ss_pred HH
Confidence 55
No 52
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-35 Score=284.14 Aligned_cols=321 Identities=22% Similarity=0.302 Sum_probs=226.1
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
++|.||......++. ++.|++.|||-|||+++++.+...+... ++ ++|+++||+.|+.|
T Consensus 15 e~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~--~~-kvlfLAPTKPLV~Q------------- 73 (542)
T COG1111 15 EPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWF--GG-KVLFLAPTKPLVLQ------------- 73 (542)
T ss_pred cHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhc--CC-eEEEecCCchHHHH-------------
Confidence 678888776555443 5899999999999999999888887765 33 89999999999999
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
..+.+.++..-..-.++.++|..+..+... +|
T Consensus 74 --------------------------h~~~~~~v~~ip~~~i~~ltGev~p~~R~~----------------------~w 105 (542)
T COG1111 74 --------------------------HAEFCRKVTGIPEDEIAALTGEVRPEEREE----------------------LW 105 (542)
T ss_pred --------------------------HHHHHHHHhCCChhheeeecCCCChHHHHH----------------------HH
Confidence 555666666655678889999987665543 44
Q ss_pred cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHH-HHHHHhhHHHHHHhccccccccccccccccccccccchh
Q 011884 165 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL-REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 243 (475)
Q Consensus 165 ~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~-~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (475)
....|+|+||+.+.+.+..+. .++.++.++||||||+.. +..|....+..++.-.
T Consensus 106 ~~~kVfvaTPQvveNDl~~Gr-id~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k----------------------- 161 (542)
T COG1111 106 AKKKVFVATPQVVENDLKAGR-IDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAK----------------------- 161 (542)
T ss_pred hhCCEEEeccHHHHhHHhcCc-cChHHceEEEechhhhccCcchHHHHHHHHHHhcc-----------------------
Confidence 456899999999999998755 888999999999999864 2233333333333211
Q ss_pred hhccccccCCCCCCccchheeeeceeeccCcccccc----ccccC-----------------------------------
Q 011884 244 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ----LDLHH----------------------------------- 284 (475)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~----~~~~~----------------------------------- 284 (475)
.+.++.+|||+..+.+.+.. +++.+
T Consensus 162 ----------------~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir 225 (542)
T COG1111 162 ----------------NPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIR 225 (542)
T ss_pred ----------------CceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHH
Confidence 12456777776543222110 00000
Q ss_pred ----------------ceeeecCcc------------c----cC-Cch---hhh------------------------hh
Q 011884 285 ----------------PLFLTTGET------------R----YK-LPE---RLE------------------------SY 304 (475)
Q Consensus 285 ----------------~~~~~~~~~------------~----~~-~~~---~~~------------------------~~ 304 (475)
..+...... . .. ... .+. ++
T Consensus 226 ~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Y 305 (542)
T COG1111 226 DLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQY 305 (542)
T ss_pred HHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 000000000 0 00 000 000 00
Q ss_pred -----------------------------------hhhccCCCcHHHHHHHHHhc----CCCeEEEEcCChHHHHHHHHH
Q 011884 305 -----------------------------------KLICESKLKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTL 345 (475)
Q Consensus 305 -----------------------------------~~~~~~~~~~~~l~~~l~~~----~~~~~lvf~~s~~~~~~l~~~ 345 (475)
....-.+.|...+.++++++ .+.++|||+..++.|+.+.+.
T Consensus 306 l~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~ 385 (542)
T COG1111 306 LEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNF 385 (542)
T ss_pred HHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHH
Confidence 00001234555555555443 567999999999999999999
Q ss_pred HhhcCCCceeeEEe-------ccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhh
Q 011884 346 LNHFGELRIKIKEY-------SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 418 (475)
Q Consensus 346 l~~~~~~~~~~~~~-------~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~G 418 (475)
|.+.++.-. +.++ ..||++.+..+++++|++|++++||||++.+||+|+|.++.||+|++..|+..++||.|
T Consensus 386 L~~~~~~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~G 464 (542)
T COG1111 386 LKKIGIKAR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKG 464 (542)
T ss_pred HHhcCCcce-eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhC
Confidence 998873221 1222 24799999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCcEEEEeech
Q 011884 419 RTARAGQLGRCFTLLHKD 436 (475)
Q Consensus 419 R~~R~~~~g~~~~~~~~~ 436 (475)
|+||. +.|.+++++.++
T Consensus 465 RTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 465 RTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred ccccC-CCCeEEEEEecC
Confidence 99998 499999998876
No 53
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=9.8e-36 Score=309.77 Aligned_cols=344 Identities=19% Similarity=0.195 Sum_probs=223.9
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCC-cEEEECCCCCchhHHhHHHHHHHHhhhhcccc-ceEEEcccHHHHHHHhhhhhc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCL-RALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~-~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~-~vlil~Pt~~L~~q~~~~~~~ 78 (475)
+||+ |+|+|.+++..++ .|+ ++++++|||||||.++.++.+.. ... .+.+ ++++++|||+|+.|+++++++
T Consensus 12 ~G~~-PtpiQ~~~i~~il----~G~~~v~~~apTGSGKTaa~aafll~~-~~~-~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFV----AGQPPESCSTPTGLGKTSIIAAWLLAV-EIG-AKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHH----cCCCcceEecCCCCcccHHHHHhhccc-ccc-ccccceEEEeCchHHHHHHHHHHHHH
Confidence 4886 9999999877654 475 68889999999998665444422 111 2233 455677999999999999887
Q ss_pred ccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchh
Q 011884 79 YCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 158 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
+..... ......-+.+ .............+++.+++||.+...++..
T Consensus 85 ~~k~l~--~~~~~~~~~~--------------~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~----------------- 131 (844)
T TIGR02621 85 IGERLP--DVPEVEAALW--------------ALCSTRPEKKDRPLAISTLRGQFADNDEWML----------------- 131 (844)
T ss_pred HHHHhc--ccchhhhhhh--------------hhhccccccccCCeEEEEEECCCChHHHHHh-----------------
Confidence 642110 0000000000 0111122344557899999999887777553
Q ss_pred HHHhhhcCCcEEEeCchHHHHH-hhcCCC--c--------ccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccc
Q 011884 159 VLQELQSAVDILVATPGRLMDH-INATRG--F--------TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 227 (475)
Q Consensus 159 ~~~~~~~~~~Iii~Tp~~l~~~-l~~~~~--~--------~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~ 227 (475)
+..+++|+|+|++.+..- +..+.. + .+.+++++|+|||| ++.+|...++.|++.+.....
T Consensus 132 ----l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~--- 202 (844)
T TIGR02621 132 ----DPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPD--- 202 (844)
T ss_pred ----cCCCCcEEEECHHHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcc---
Confidence 334679999997766331 111100 0 15779999999999 567888888888875411000
Q ss_pred cccccccccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhh
Q 011884 228 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI 307 (475)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (475)
....|.+++|||++............++............ ..+.+. ..
T Consensus 203 ------------------------------~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a-~ki~q~-v~ 250 (844)
T TIGR02621 203 ------------------------------FLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAA-KKIVKL-VP 250 (844)
T ss_pred ------------------------------cccceEEEEecCCCccHHHHHHHHccCCceeecccccccc-cceEEE-Ee
Confidence 0123789999999877666554444444433332211111 111221 11
Q ss_pred ccCCCcHHHHHHHH---HhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHH-----HHHHHHHc--
Q 011884 308 CESKLKPLYLVALL---QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS-----KTLKAFRE-- 377 (475)
Q Consensus 308 ~~~~~~~~~l~~~l---~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~-----~~~~~f~~-- 377 (475)
.....+...+...+ ....++++||||+|+..|+.+++.|++.+ + ..+||+|++.+|. ++++.|++
T Consensus 251 v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g---~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~ 325 (844)
T TIGR02621 251 PSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEK---F--ELLTGTLRGAERDDLVKKEIFNRFLPQM 325 (844)
T ss_pred cChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcC---C--eEeeCCCCHHHHhhHHHHHHHHHHhccc
Confidence 12222332222221 12356789999999999999999998754 3 8999999999999 77899987
Q ss_pred --CC-------eEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcE-EEEe
Q 011884 378 --GK-------IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC-FTLL 433 (475)
Q Consensus 378 --g~-------~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~-~~~~ 433 (475)
|+ ..|||+|+++++|+|++. ++||....| ...|+||+||+||.|+.+.+ +.++
T Consensus 326 ~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 326 LSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred cccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 43 689999999999999996 778776655 78999999999999875443 4444
No 54
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.1e-35 Score=309.64 Aligned_cols=335 Identities=24% Similarity=0.278 Sum_probs=233.3
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 81 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 81 (475)
|+..+.+.|+.++...+. .+.|+||++|||||||++++++++..+... +.+++|+||+++||++.+++|+
T Consensus 28 ~~~el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~---~~k~vYivPlkALa~Ek~~~~~---- 97 (766)
T COG1204 28 GIDELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG---GGKVVYIVPLKALAEEKYEEFS---- 97 (766)
T ss_pred ChHHhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc---CCcEEEEeChHHHHHHHHHHhh----
Confidence 455678888887654433 479999999999999999999999888764 4589999999999999655543
Q ss_pred cccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHH
Q 011884 82 KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (475)
.....|+++...+|+.....+
T Consensus 98 ------------------------------------~~~~~GirV~~~TgD~~~~~~----------------------- 118 (766)
T COG1204 98 ------------------------------------RLEELGIRVGISTGDYDLDDE----------------------- 118 (766)
T ss_pred ------------------------------------hHHhcCCEEEEecCCcccchh-----------------------
Confidence 223458999999999764442
Q ss_pred hhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccc
Q 011884 162 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 241 (475)
Q Consensus 162 ~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (475)
...+++|+|+||+++-..+++.. .....+++||+||+|.+.+..+++.++.+..+......
T Consensus 119 -~l~~~~ViVtT~EK~Dsl~R~~~-~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~----------------- 179 (766)
T COG1204 119 -RLARYDVIVTTPEKLDSLTRKRP-SWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE----------------- 179 (766)
T ss_pred -hhccCCEEEEchHHhhHhhhcCc-chhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCc-----------------
Confidence 12357999999999987777755 47789999999999999888789999999987765332
Q ss_pred hhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCC------cHH
Q 011884 242 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL------KPL 315 (475)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 315 (475)
..+++.+|||+++ ..+++.+.-.++...........-+.............. ...
T Consensus 180 ------------------~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~ 240 (766)
T COG1204 180 ------------------LIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDN 240 (766)
T ss_pred ------------------ceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchH
Confidence 2478999999964 444443222222110010000001111111111111111 222
Q ss_pred HHHHHH-Hhc-CCCeEEEEcCChHHHHHHHHHHhhc--------C---------C-C----------------ceeeEEe
Q 011884 316 YLVALL-QSL-GEEKCIVFTSSVESTHRLCTLLNHF--------G---------E-L----------------RIKIKEY 359 (475)
Q Consensus 316 ~l~~~l-~~~-~~~~~lvf~~s~~~~~~l~~~l~~~--------~---------~-~----------------~~~~~~~ 359 (475)
...+++ ... .++++||||+|+..+...++.+... . + . ...++++
T Consensus 241 ~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafH 320 (766)
T COG1204 241 LALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFH 320 (766)
T ss_pred HHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccc
Confidence 222222 222 5789999999999999999998830 0 0 0 1358899
Q ss_pred ccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEE----Eec-----CCCCHHHHHHHhhhccccCCC--Cc
Q 011884 360 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV----NYD-----KPAYIKTYIHRAGRTARAGQL--GR 428 (475)
Q Consensus 360 ~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv----~~~-----~~~s~~~~~Q~~GR~~R~~~~--g~ 428 (475)
|+|++..+|+.+.+.|++|+++||+||+++.+|+|+|.-.+|| .++ -+.++.++.|++|||||.|-+ |.
T Consensus 321 hAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~ 400 (766)
T COG1204 321 HAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGE 400 (766)
T ss_pred ccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCc
Confidence 9999999999999999999999999999999999999544444 233 234688999999999998855 55
Q ss_pred EEEEe-echhHHHHHH
Q 011884 429 CFTLL-HKDEVKRFKK 443 (475)
Q Consensus 429 ~~~~~-~~~~~~~~~~ 443 (475)
++++. +..+...+.+
T Consensus 401 ~~i~~~~~~~~~~~~~ 416 (766)
T COG1204 401 AIILATSHDELEYLAE 416 (766)
T ss_pred EEEEecCccchhHHHH
Confidence 55555 3344443333
No 55
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.7e-35 Score=300.83 Aligned_cols=362 Identities=21% Similarity=0.264 Sum_probs=256.2
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh------ccccceEEEcccHHHHHHHhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQVNS 74 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~------~~~~~vlil~Pt~~L~~q~~~ 74 (475)
|+|..++..|..++..+++ ++.++|||||||||||-++++.+++.+.++. .++.+++|++|+++||..+++
T Consensus 106 f~f~~fN~iQS~vFp~aY~---SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYK---SNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhc---CCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHH
Confidence 5788899999999887766 7899999999999999999999999987521 256789999999999999533
Q ss_pred hhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccC
Q 011884 75 ARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 154 (475)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (475)
.+.+-....|+++.-++|+.......
T Consensus 183 ---------------------------------------~~~kkl~~~gi~v~ELTGD~ql~~te--------------- 208 (1230)
T KOG0952|consen 183 ---------------------------------------KFSKKLAPLGISVRELTGDTQLTKTE--------------- 208 (1230)
T ss_pred ---------------------------------------HHhhhcccccceEEEecCcchhhHHH---------------
Confidence 33333334589999999998765443
Q ss_pred CchhHHHhhhcCCcEEEeCchHHHHHhhcCC---CcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccc
Q 011884 155 DPEDVLQELQSAVDILVATPGRLMDHINATR---GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 231 (475)
Q Consensus 155 ~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~---~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~ 231 (475)
...++|+|+||+++ +.+.+.. ....+.+++||+||+|.+ ...+++.++.|..++......
T Consensus 209 ---------i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlL-hd~RGpvlEtiVaRtlr~ves------ 271 (1230)
T KOG0952|consen 209 ---------IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLL-HDDRGPVLETIVARTLRLVES------ 271 (1230)
T ss_pred ---------HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhh-cCcccchHHHHHHHHHHHHHh------
Confidence 13579999999995 4443322 233677899999999966 677889999998876532211
Q ss_pred cccccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCc--eeeecCccccCCchhhhhhhhhcc
Q 011884 232 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP--LFLTTGETRYKLPERLESYKLICE 309 (475)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 309 (475)
.-.+++++++|||++ ++.+++...-.++ .++..+.. ..|.++.+.+....
T Consensus 272 -------------------------sqs~IRivgLSATlP-N~eDvA~fL~vn~~~glfsFd~~--yRPvpL~~~~iG~k 323 (1230)
T KOG0952|consen 272 -------------------------SQSMIRIVGLSATLP-NYEDVARFLRVNPYAGLFSFDQR--YRPVPLTQGFIGIK 323 (1230)
T ss_pred -------------------------hhhheEEEEeeccCC-CHHHHHHHhcCCCccceeeeccc--ccccceeeeEEeee
Confidence 113567899999996 4555544333321 12222221 22333333332222
Q ss_pred CC-----------CcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCC--------------------ceeeEE
Q 011884 310 SK-----------LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL--------------------RIKIKE 358 (475)
Q Consensus 310 ~~-----------~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~--------------------~~~~~~ 358 (475)
.. ...+.+.+.+. .+.+++||+.++..+.+.++.|.+.... ....++
T Consensus 324 ~~~~~~~~~~~d~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~i 401 (1230)
T KOG0952|consen 324 GKKNRQQKKNIDEVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGI 401 (1230)
T ss_pred cccchhhhhhHHHHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhh
Confidence 22 12233333333 4789999999999999999988774210 135789
Q ss_pred eccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCC-----------CCHHHHHHHhhhccccC--C
Q 011884 359 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-----------AYIKTYIHRAGRTARAG--Q 425 (475)
Q Consensus 359 ~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~-----------~s~~~~~Q~~GR~~R~~--~ 425 (475)
+|+||...+|..+.+.|..|..+||+||..+.+|+|+|. ..||+-+-+ -+....+|.+|||||.. .
T Consensus 402 HhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~ 480 (1230)
T KOG0952|consen 402 HHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDS 480 (1230)
T ss_pred cccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCC
Confidence 999999999999999999999999999999999999995 556654422 24778999999999954 4
Q ss_pred CCcEEEEeechhHHHHHHHHHHhcCCCCCccCCChhhhhhhhccc
Q 011884 426 LGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 470 (475)
Q Consensus 426 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (475)
.|.++++.+.+-..++..++..-+. -+.++.+.|+|-|+++.
T Consensus 481 ~G~giIiTt~dkl~~Y~sLl~~~~p---iES~~~~~L~dnLnAEi 522 (1230)
T KOG0952|consen 481 SGEGIIITTRDKLDHYESLLTGQNP---IESQLLPCLIDNLNAEI 522 (1230)
T ss_pred CceEEEEecccHHHHHHHHHcCCCh---hHHHHHHHHHHhhhhhe
Confidence 5888888888888888888776641 12333444445555543
No 56
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2e-34 Score=295.18 Aligned_cols=302 Identities=17% Similarity=0.179 Sum_probs=199.9
Q ss_pred CcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccc
Q 011884 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 83 (475)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 83 (475)
..|+++|.+|+..++. +++.++++|||+|||.++...+ ..+... ...++||++||++|+.||+++++++
T Consensus 113 ~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~-~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~---- 181 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLS-RYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDY---- 181 (501)
T ss_pred CCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHH-HHHHhc--CCCeEEEEECcHHHHHHHHHHHHHh----
Confidence 4799999998876654 6788999999999998765432 222222 2347999999999999976665443
Q ss_pred cccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhh
Q 011884 84 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 163 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (475)
.......+..+.++....
T Consensus 182 -----------------------------------~~~~~~~~~~i~~g~~~~--------------------------- 199 (501)
T PHA02558 182 -----------------------------------RLFPREAMHKIYSGTAKD--------------------------- 199 (501)
T ss_pred -----------------------------------ccccccceeEEecCcccC---------------------------
Confidence 221122333344432210
Q ss_pred hcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchh
Q 011884 164 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 243 (475)
Q Consensus 164 ~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (475)
.+++|+|+||+++.+... ..+.+++++|+||||++.+..+. .++..+..
T Consensus 200 -~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~~~~----~il~~~~~---------------------- 248 (501)
T PHA02558 200 -TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGKSLT----SIITKLDN---------------------- 248 (501)
T ss_pred -CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccchhHH----HHHHhhhc----------------------
Confidence 235899999999875332 23578999999999999765443 33333211
Q ss_pred hhccccccCCCCCCccchheeeeceeeccCcccccc-ccccCceeeecCcc----------------ccCCc-hh-----
Q 011884 244 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LDLHHPLFLTTGET----------------RYKLP-ER----- 300 (475)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~-~~~~~~~~~~~~~~----------------~~~~~-~~----- 300 (475)
..+.+++|||+.+....... ..+-.+........ ....+ ..
T Consensus 249 ----------------~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~ 312 (501)
T PHA02558 249 ----------------CKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLK 312 (501)
T ss_pred ----------------cceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhc
Confidence 11468889998643221100 00000111000000 00000 00
Q ss_pred ---hhh-hhhhccCCCcHHHHHHHHHh--cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHH
Q 011884 301 ---LES-YKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 374 (475)
Q Consensus 301 ---~~~-~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~ 374 (475)
... .........+...+...... ..+.+++|||.+.++++.+++.|++.+ .++..+||+|+..+|.++++.
T Consensus 313 ~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g---~~v~~i~G~~~~~eR~~i~~~ 389 (501)
T PHA02558 313 GEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVY---DKVYYVSGEVDTEDRNEMKKI 389 (501)
T ss_pred ccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcC---CCEEEEeCCCCHHHHHHHHHH
Confidence 000 00111222233333333322 246789999999999999999999866 799999999999999999999
Q ss_pred HHcCCeEEEEEc-CCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCc
Q 011884 375 FREGKIQVLVSS-DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 428 (475)
Q Consensus 375 f~~g~~~iLv~t-~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~ 428 (475)
|++|+..+||+| +++++|+|+|+++.||++.++.|...|+|++||++|.+..+.
T Consensus 390 ~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 390 AEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKS 444 (501)
T ss_pred HhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCc
Confidence 999999999998 899999999999999999999999999999999999875443
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=9.2e-34 Score=300.29 Aligned_cols=307 Identities=19% Similarity=0.242 Sum_probs=214.6
Q ss_pred hhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHH
Q 011884 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAE 95 (475)
Q Consensus 16 ~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 95 (475)
.+++.+.++++++++|+||||||+++..++++... .+.+++++.|||.+|.|+++.+
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----~~~~ilvlqPrR~aA~qiA~rv------------------- 65 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG----IGGKIIMLEPRRLAARSAAQRL------------------- 65 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc----cCCeEEEEeCcHHHHHHHHHHH-------------------
Confidence 45566667899999999999999999998887652 2348999999999999965442
Q ss_pred HhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCch
Q 011884 96 MCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 175 (475)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~ 175 (475)
...+....+..++..++... ....+++|+|+||+
T Consensus 66 -------------------a~~~~~~~g~~VGy~vr~~~---------------------------~~s~~t~I~v~T~G 99 (819)
T TIGR01970 66 -------------------ASQLGEAVGQTVGYRVRGEN---------------------------KVSRRTRLEVVTEG 99 (819)
T ss_pred -------------------HHHhCCCcCcEEEEEEcccc---------------------------ccCCCCcEEEECCc
Confidence 12333334444444333221 11124689999999
Q ss_pred HHHHHhhcCCCcccCCccEEEEcchHH-HHHHHHH-hhHHHHHHhccccccccccccccccccccccchhhhccccccCC
Q 011884 176 RLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 253 (475)
Q Consensus 176 ~l~~~l~~~~~~~~~~~~~lVvDE~H~-l~~~~~~-~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (475)
.|.+.+.. ...++++++||+||+|+ .++.++. ..+..+...++
T Consensus 100 ~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr--------------------------------- 144 (819)
T TIGR01970 100 ILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLR--------------------------------- 144 (819)
T ss_pred HHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcC---------------------------------
Confidence 99988875 35689999999999995 4443332 12223332221
Q ss_pred CCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcH-----HHHHHHHHhcCCCe
Q 011884 254 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP-----LYLVALLQSLGEEK 328 (475)
Q Consensus 254 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~l~~~~~~~ 328 (475)
+..+.+++|||+.... +. ..+.++.++........ ++..+.......+. ..+..++.. ..++
T Consensus 145 -----~dlqlIlmSATl~~~~--l~-~~l~~~~vI~~~gr~~p----Ve~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~ 211 (819)
T TIGR01970 145 -----EDLKILAMSATLDGER--LS-SLLPDAPVVESEGRSFP----VEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGS 211 (819)
T ss_pred -----CCceEEEEeCCCCHHH--HH-HHcCCCcEEEecCccee----eeeEEeecchhhhHHHHHHHHHHHHHHh-cCCc
Confidence 1347899999997532 22 23333333322221111 12222111112221 223333333 3679
Q ss_pred EEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCCC
Q 011884 329 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 408 (475)
Q Consensus 329 ~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~ 408 (475)
+|||+++..+++.+++.|++....++.+..+||+|+..+|.++++.|++|+.+|||||++.+.|||+|++++||.++.++
T Consensus 212 iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r 291 (819)
T TIGR01970 212 ILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLAR 291 (819)
T ss_pred EEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccc
Confidence 99999999999999999987422358899999999999999999999999999999999999999999999999999764
Q ss_pred ------------------CHHHHHHHhhhccccCCCCcEEEEeechhHHH
Q 011884 409 ------------------YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 440 (475)
Q Consensus 409 ------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 440 (475)
|..++.||+||+||. .+|.|+.++++.+...
T Consensus 292 ~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 292 VARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred ccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 345689999999999 5999999999877644
No 58
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=6.6e-34 Score=294.63 Aligned_cols=326 Identities=15% Similarity=0.132 Sum_probs=219.9
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHh---------HHHHHHHHhh--hhccccceEEEcccHHHHHHHh
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY---------ALPIVQTLSN--RAVRCLRALVVLPTRDLALQVN 73 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~---------~~~~~~~l~~--~~~~~~~vlil~Pt~~L~~q~~ 73 (475)
.+++.|.++++++++.+.++++++++|+||||||.+. +.+.+..+.. ......++++++||++||.|++
T Consensus 160 ~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~ 239 (675)
T PHA02653 160 PLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHS 239 (675)
T ss_pred cCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHH
Confidence 5889999999999999999999999999999999862 2333333321 0113457999999999999965
Q ss_pred hhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCcc
Q 011884 74 SARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 153 (475)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 153 (475)
.++.+.+ .+....+..+.+.+|+... ....
T Consensus 240 ~~i~~~v------------------------------------g~~~~~g~~v~v~~Gg~~~-~~~~------------- 269 (675)
T PHA02653 240 ITLLKSL------------------------------------GFDEIDGSPISLKYGSIPD-ELIN------------- 269 (675)
T ss_pred HHHHHHh------------------------------------CccccCCceEEEEECCcch-HHhh-------------
Confidence 5532221 1122345677888888752 1100
Q ss_pred CCchhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccc
Q 011884 154 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 233 (475)
Q Consensus 154 ~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ 233 (475)
......+|+++|++.. ...++++++||+||||+....+ ..+..++.....
T Consensus 270 --------t~~k~~~Ilv~T~~L~--------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~~~~------------ 319 (675)
T PHA02653 270 --------TNPKPYGLVFSTHKLT--------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVARKHID------------ 319 (675)
T ss_pred --------cccCCCCEEEEeCccc--------ccccccCCEEEccccccCccch--hHHHHHHHHhhh------------
Confidence 0112458999997531 1246789999999999874332 333333322111
Q ss_pred cccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhcc----
Q 011884 234 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE---- 309 (475)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 309 (475)
...+.+++|||++.+...+. ..+.++..+...... ..++++.+....
T Consensus 320 -------------------------~~rq~ILmSATl~~dv~~l~-~~~~~p~~I~I~grt---~~pV~~~yi~~~~~~~ 370 (675)
T PHA02653 320 -------------------------KIRSLFLMTATLEDDRDRIK-EFFPNPAFVHIPGGT---LFPISEVYVKNKYNPK 370 (675)
T ss_pred -------------------------hcCEEEEEccCCcHhHHHHH-HHhcCCcEEEeCCCc---CCCeEEEEeecCcccc
Confidence 01167999999987666653 455555554443211 011111111000
Q ss_pred ------CCCcHHHHHHHHHh---cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHH-HcCC
Q 011884 310 ------SKLKPLYLVALLQS---LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF-REGK 379 (475)
Q Consensus 310 ------~~~~~~~l~~~l~~---~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f-~~g~ 379 (475)
...+.. +...+.. ..++.+|||++++..++.+++.|++.. .+..+..+||+|++. ++.+++| ++|+
T Consensus 371 ~~~~y~~~~k~~-~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~-~~~~v~~LHG~Lsq~--eq~l~~ff~~gk 446 (675)
T PHA02653 371 NKRAYIEEEKKN-IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL-PIYDFYIIHGKVPNI--DEILEKVYSSKN 446 (675)
T ss_pred cchhhhHHHHHH-HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc-CCceEEeccCCcCHH--HHHHHHHhccCc
Confidence 011111 2222222 235689999999999999999998752 237899999999873 5667787 6899
Q ss_pred eEEEEEcCCcccCCCCCCCcEEEEec---CCC---------CHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHH
Q 011884 380 IQVLVSSDAMTRGMDVEGVNNVVNYD---KPA---------YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 444 (475)
Q Consensus 380 ~~iLv~t~~~~~GiDip~~~~Vv~~~---~~~---------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l 444 (475)
.+|||||+++++|+|+|++++||.++ .|. |...+.||+||+||. ++|.|+.++++++...+.++
T Consensus 447 ~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri 522 (675)
T PHA02653 447 PSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRI 522 (675)
T ss_pred eeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHH
Confidence 99999999999999999999999998 444 788999999999999 59999999998776544443
No 59
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.6e-33 Score=277.42 Aligned_cols=313 Identities=18% Similarity=0.178 Sum_probs=196.9
Q ss_pred cEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhcccccc
Q 011884 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLF 105 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (475)
++++.||||||||.+++.+++..+... ...+++|++|+++|+.|+++.+++++..
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~--~~~~ii~v~P~~~L~~q~~~~l~~~f~~----------------------- 55 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ--KADRVIIALPTRATINAMYRRAKELFGS----------------------- 55 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC--CCCeEEEEeehHHHHHHHHHHHHHHhCc-----------------------
Confidence 478999999999999999999876543 4558999999999999977665443211
Q ss_pred ccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHh------hhcCCcEEEeCchHHHH
Q 011884 106 ISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE------LQSAVDILVATPGRLMD 179 (475)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Iii~Tp~~l~~ 179 (475)
.+...+|+........ . . +. ......... .-..++|+++||++++.
T Consensus 56 -------------------~~~~~~~~~~~~~~~~---~-~--~~---~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~ 107 (358)
T TIGR01587 56 -------------------NLGLLHSSSSFKRIKE---M-G--DS---EEFEHLFPLYIHSNDKLFLDPITVCTIDQVLK 107 (358)
T ss_pred -------------------ccEEeeccHHHHHHhc---c-C--Cc---hhHHHHHHHHhhchhhhhhCCeeeCCHHHHHH
Confidence 2222333221100000 0 0 00 000000000 01135799999999988
Q ss_pred Hhhc-CCC--ccc--CCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhhhccccccCCC
Q 011884 180 HINA-TRG--FTL--EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 254 (475)
Q Consensus 180 ~l~~-~~~--~~~--~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (475)
.+.. ... ..+ -..+++|+||+|.+.+.++.. +..++..+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~--------------------------------- 153 (358)
T TIGR01587 108 SVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKD--------------------------------- 153 (358)
T ss_pred HHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHH---------------------------------
Confidence 7665 111 111 123789999999987654443 4444443321
Q ss_pred CCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhh--hccCCCcHHHHHHHHHhc-CCCeEEE
Q 011884 255 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL--ICESKLKPLYLVALLQSL-GEEKCIV 331 (475)
Q Consensus 255 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~-~~~~~lv 331 (475)
...+.+++|||++.....+.......+........ .......+... ......+...+..+++.. .++++||
T Consensus 154 ----~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lV 227 (358)
T TIGR01587 154 ----NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK--EERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAI 227 (358)
T ss_pred ----cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc--cccccccccceeeccccccCHHHHHHHHHHhhCCCeEEE
Confidence 12368999999985544443322221111000000 00000111111 111224455566655543 5689999
Q ss_pred EcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHH----HHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCC
Q 011884 332 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK----TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 407 (475)
Q Consensus 332 f~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~----~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~ 407 (475)
||++++.++.+++.|++... ...+..+||+++..+|.+ +++.|++|+.++||||+++++|+|++ ++.||.+..|
T Consensus 228 f~~t~~~~~~~~~~L~~~~~-~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~ 305 (358)
T TIGR01587 228 IVNTVDRAQEFYQQLKENAP-EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP 305 (358)
T ss_pred EECCHHHHHHHHHHHHhhcC-CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC
Confidence 99999999999999987652 236899999999999976 48899999999999999999999997 7788777655
Q ss_pred CCHHHHHHHhhhccccCCCC----cEEEEeec
Q 011884 408 AYIKTYIHRAGRTARAGQLG----RCFTLLHK 435 (475)
Q Consensus 408 ~s~~~~~Q~~GR~~R~~~~g----~~~~~~~~ 435 (475)
+..|+||+||+||.|+.+ .++++...
T Consensus 306 --~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 306 --IDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred --HHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 789999999999987542 45555443
No 60
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=5.5e-34 Score=274.78 Aligned_cols=324 Identities=25% Similarity=0.258 Sum_probs=246.7
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+|+..+.|.|.-|+ -..++.|.|.++..+|+||||++.-++-+..+... +.+.||++|-.+||+|
T Consensus 212 ~G~~eLlPVQ~laV---e~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~---g~KmlfLvPLVALANQ--------- 276 (830)
T COG1202 212 EGIEELLPVQVLAV---EAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG---GKKMLFLVPLVALANQ--------- 276 (830)
T ss_pred cCcceecchhhhhh---hhccccCCceEEEeccCCCcchHHHhhCcHHHHhC---CCeEEEEehhHHhhcc---------
Confidence 48999999999885 44777899999999999999999988877777653 5579999999999999
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
-.+.|+.-...+++++..-+|...+.....- ..
T Consensus 277 ------------------------------Ky~dF~~rYs~LglkvairVG~srIk~~~~p-----------------v~ 309 (830)
T COG1202 277 ------------------------------KYEDFKERYSKLGLKVAIRVGMSRIKTREEP-----------------VV 309 (830)
T ss_pred ------------------------------hHHHHHHHhhcccceEEEEechhhhcccCCc-----------------cc
Confidence 4444555556678888777777654333110 01
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
-....++||+|+|++.+--+++.+ ..+.++..||+||+|.+.+..++..+..++.+++...+
T Consensus 310 ~~t~~dADIIVGTYEGiD~lLRtg--~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~---------------- 371 (830)
T COG1202 310 VDTSPDADIIVGTYEGIDYLLRTG--KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFP---------------- 371 (830)
T ss_pred cCCCCCCcEEEeechhHHHHHHcC--CcccccceEEeeeeeeccchhcccchhhHHHHHHHhCC----------------
Confidence 112245799999999987777764 56789999999999999888888889999988765332
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhcc-CCCcHHHHHH
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVA 319 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 319 (475)
.-|.|.+|||.. +..+++...-...+.+. .-|.++......+. ...|+..+..
T Consensus 372 -------------------~AQ~i~LSATVg-Np~elA~~l~a~lV~y~------~RPVplErHlvf~~~e~eK~~ii~~ 425 (830)
T COG1202 372 -------------------GAQFIYLSATVG-NPEELAKKLGAKLVLYD------ERPVPLERHLVFARNESEKWDIIAR 425 (830)
T ss_pred -------------------CCeEEEEEeecC-ChHHHHHHhCCeeEeec------CCCCChhHeeeeecCchHHHHHHHH
Confidence 348899999995 44555443323322221 12334444444444 5667777766
Q ss_pred HHHhc--------CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCccc
Q 011884 320 LLQSL--------GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 391 (475)
Q Consensus 320 ~l~~~--------~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~ 391 (475)
+.+.. -.+++|||++|+..|+.++..|...+ +++..||+|++..+|..+...|.+++..++|+|-+++.
T Consensus 426 L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG---~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~A 502 (830)
T COG1202 426 LVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKG---LKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAA 502 (830)
T ss_pred HHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCC---cccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhc
Confidence 66432 35699999999999999999999776 99999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEE-----ecCCCCHHHHHHHhhhccccCC--CCcEEEEee
Q 011884 392 GMDVEGVNNVVN-----YDKPAYIKTYIHRAGRTARAGQ--LGRCFTLLH 434 (475)
Q Consensus 392 GiDip~~~~Vv~-----~~~~~s~~~~~Q~~GR~~R~~~--~g~~~~~~~ 434 (475)
|+|+|. +.||+ -.-+.|+.+|.|+.||+||.+- .|++++++.
T Consensus 503 GVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllve 551 (830)
T COG1202 503 GVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVE 551 (830)
T ss_pred CCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEec
Confidence 999996 44443 2245689999999999999763 577777754
No 61
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.5e-33 Score=299.47 Aligned_cols=307 Identities=20% Similarity=0.236 Sum_probs=214.0
Q ss_pred hhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhH
Q 011884 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIA 94 (475)
Q Consensus 15 ~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~ 94 (475)
..++..+.++++++++||||||||+++.+++++... ...+++++.|||.+|.|+++.+
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~----~~~~ilvlqPrR~aA~qia~rv------------------ 68 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG----INGKIIMLEPRRLAARNVAQRL------------------ 68 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC----cCCeEEEECChHHHHHHHHHHH------------------
Confidence 445666667899999999999999999888886432 2247999999999999964442
Q ss_pred HHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCc
Q 011884 95 EMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 174 (475)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp 174 (475)
...+....+..++..+++... ....++|+|+||
T Consensus 69 --------------------a~~l~~~~g~~VGy~vr~~~~---------------------------~~~~t~I~v~T~ 101 (812)
T PRK11664 69 --------------------AEQLGEKPGETVGYRMRAESK---------------------------VGPNTRLEVVTE 101 (812)
T ss_pred --------------------HHHhCcccCceEEEEecCccc---------------------------cCCCCcEEEECh
Confidence 123334445666655544321 112357999999
Q ss_pred hHHHHHhhcCCCcccCCccEEEEcchHHH-HHHHH-HhhHHHHHHhccccccccccccccccccccccchhhhccccccC
Q 011884 175 GRLMDHINATRGFTLEHLCYLVVDETDRL-LREAY-QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 252 (475)
Q Consensus 175 ~~l~~~l~~~~~~~~~~~~~lVvDE~H~l-~~~~~-~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (475)
+.+.+.+.. ...++++++||+||+|+. .+.+. -..+..+.+.++
T Consensus 102 G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr-------------------------------- 147 (812)
T PRK11664 102 GILTRMIQR--DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLR-------------------------------- 147 (812)
T ss_pred hHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCC--------------------------------
Confidence 999988875 356899999999999973 22211 112222222221
Q ss_pred CCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHH-----HHHHHHHhcCCC
Q 011884 253 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL-----YLVALLQSLGEE 327 (475)
Q Consensus 253 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~l~~~~~~ 327 (475)
+..+.+++|||+... .+. ..+.++.++....... .+++.+.......+.. .+...+.. ..+
T Consensus 148 ------~~lqlilmSATl~~~--~l~-~~~~~~~~I~~~gr~~----pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g 213 (812)
T PRK11664 148 ------DDLKLLIMSATLDND--RLQ-QLLPDAPVIVSEGRSF----PVERRYQPLPAHQRFDEAVARATAELLRQ-ESG 213 (812)
T ss_pred ------ccceEEEEecCCCHH--HHH-HhcCCCCEEEecCccc----cceEEeccCchhhhHHHHHHHHHHHHHHh-CCC
Confidence 134789999999653 222 2233332332222111 1222222122222221 23333333 468
Q ss_pred eEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCC
Q 011884 328 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 407 (475)
Q Consensus 328 ~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~ 407 (475)
.+|||++++.+++.+++.|++....++.+..+||+|+..+|.+++..|++|+.+|||||++.+.|||+|++++||.++.+
T Consensus 214 ~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~ 293 (812)
T PRK11664 214 SLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLE 293 (812)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCc
Confidence 99999999999999999998732235789999999999999999999999999999999999999999999999998876
Q ss_pred C------------------CHHHHHHHhhhccccCCCCcEEEEeechhHH
Q 011884 408 A------------------YIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 439 (475)
Q Consensus 408 ~------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 439 (475)
+ |..++.||+||+||.+ +|.|+.++++.+..
T Consensus 294 r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~-~G~cyrL~t~~~~~ 342 (812)
T PRK11664 294 RVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE-PGICLHLYSKEQAE 342 (812)
T ss_pred ccccccccCCcceeEEEeechhhhhhhccccCCCC-CcEEEEecCHHHHh
Confidence 4 3468999999999995 99999999977664
No 62
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=8.9e-33 Score=279.50 Aligned_cols=131 Identities=31% Similarity=0.438 Sum_probs=108.5
Q ss_pred CcHHHHHHHHHhc----CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEecc--------ccCHHHHHHHHHHHHcCC
Q 011884 312 LKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG--------LQRQSVRSKTLKAFREGK 379 (475)
Q Consensus 312 ~~~~~l~~~l~~~----~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g--------~~~~~~r~~~~~~f~~g~ 379 (475)
.|.+.+.+.+.++ +..++|||+.+++.|..+.++|.+.-..+++..++.| +|++.+..+++++|++|+
T Consensus 395 pkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~ 474 (746)
T KOG0354|consen 395 PKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGE 474 (746)
T ss_pred hhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCC
Confidence 3455555555433 5669999999999999999999864444455555554 899999999999999999
Q ss_pred eEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHH
Q 011884 380 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 444 (475)
Q Consensus 380 ~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l 444 (475)
.++||||++.+||+|++.|+.||.|+...|+..++||.|| ||.. .|++++++...+....+..
T Consensus 475 ~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll~t~~~~~~~E~~ 537 (746)
T KOG0354|consen 475 INVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLLTTGSEVIEFERN 537 (746)
T ss_pred ccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEEEcchhHHHHHHH
Confidence 9999999999999999999999999999999999999999 9987 8889888876555444433
No 63
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.5e-33 Score=297.01 Aligned_cols=334 Identities=24% Similarity=0.303 Sum_probs=237.7
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 81 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 81 (475)
|+..|+++|.+|++.+.+ |++++|..|||||||.+|++|+++.+...+ ..++|+++||++|+++..+++.++
T Consensus 67 g~~~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~~~--~a~AL~lYPtnALa~DQ~~rl~~~-- 138 (851)
T COG1205 67 GIERLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLRDP--SARALLLYPTNALANDQAERLREL-- 138 (851)
T ss_pred ccccccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhhCc--CccEEEEechhhhHhhHHHHHHHH--
Confidence 667799999999886654 899999999999999999999999998874 448999999999999965554333
Q ss_pred cccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHH
Q 011884 82 KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (475)
...+.. ++.+..++|+++..+...
T Consensus 139 ---------------------------------~~~~~~--~v~~~~y~Gdt~~~~r~~--------------------- 162 (851)
T COG1205 139 ---------------------------------ISDLPG--KVTFGRYTGDTPPEERRA--------------------- 162 (851)
T ss_pred ---------------------------------HHhCCC--cceeeeecCCCChHHHHH---------------------
Confidence 222222 588889999887655533
Q ss_pred hhhcCCcEEEeCchHHHHHhhcCCC---cccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccc
Q 011884 162 ELQSAVDILVATPGRLMDHINATRG---FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238 (475)
Q Consensus 162 ~~~~~~~Iii~Tp~~l~~~l~~~~~---~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
.+.+.|+|++|||+|+...+..... ..+.++++||+||+|.. ...++..+..+++++......
T Consensus 163 ~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY-rGv~GS~vA~llRRL~~~~~~------------- 228 (851)
T COG1205 163 IIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY-RGVQGSEVALLLRRLLRRLRR------------- 228 (851)
T ss_pred HHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec-cccchhHHHHHHHHHHHHHhc-------------
Confidence 3445679999999999885443332 33667999999999976 445566677777665542211
Q ss_pred ccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhcc---------
Q 011884 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE--------- 309 (475)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 309 (475)
.....++|+.|||+....+............ .... ...+..........+
T Consensus 229 ------------------~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~-~v~~--~g~~~~~~~~~~~~p~~~~~~~~~ 287 (851)
T COG1205 229 ------------------YGSPLQIICTSATLANPGEFAEELFGRDFEV-PVDE--DGSPRGLRYFVRREPPIRELAESI 287 (851)
T ss_pred ------------------cCCCceEEEEeccccChHHHHHHhcCCccee-eccC--CCCCCCceEEEEeCCcchhhhhhc
Confidence 1124578999999976544443333222222 1111 111111111111111
Q ss_pred CCCcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHH----HHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEE
Q 011884 310 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLC----TLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 382 (475)
Q Consensus 310 ~~~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~----~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~i 382 (475)
.......+..+.... .+-++|+|+.++..++.+. +.+...+ .....+..++++++..+|.++...|++|+..+
T Consensus 288 r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~ 367 (851)
T COG1205 288 RRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLG 367 (851)
T ss_pred ccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccE
Confidence 122333333333222 5779999999999999996 3333333 33356889999999999999999999999999
Q ss_pred EEEcCCcccCCCCCCCcEEEEecCCC-CHHHHHHHhhhccccCCCCcEEEEee
Q 011884 383 LVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAGQLGRCFTLLH 434 (475)
Q Consensus 383 Lv~t~~~~~GiDip~~~~Vv~~~~~~-s~~~~~Q~~GR~~R~~~~g~~~~~~~ 434 (475)
+++|++++.|+|+.+++.||..+.|. +..+++|++||+||.++.+-.+.+..
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 99999999999999999999999999 99999999999999996555555544
No 64
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=2.2e-32 Score=272.83 Aligned_cols=340 Identities=19% Similarity=0.240 Sum_probs=247.5
Q ss_pred CCCcccchhhhhhhhhcCCCCCC--CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~--~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 79 (475)
+| +|+..|.+++..+...+.+. .+=|++|..|||||.+++++++..+.. |.++.+++||.-||+|
T Consensus 260 PF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~----G~Q~ALMAPTEILA~Q-------- 326 (677)
T COG1200 260 PF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA----GYQAALMAPTEILAEQ-------- 326 (677)
T ss_pred CC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc----CCeeEEeccHHHHHHH--------
Confidence 45 79999999999999998887 567999999999999999999988765 3479999999999999
Q ss_pred cccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhH
Q 011884 80 CCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 159 (475)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
..+.+.+|....++++..++|+.........
T Consensus 327 -------------------------------H~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~------------------ 357 (677)
T COG1200 327 -------------------------------HYESLRKWLEPLGIRVALLTGSLKGKARKEI------------------ 357 (677)
T ss_pred -------------------------------HHHHHHHHhhhcCCeEEEeecccchhHHHHH------------------
Confidence 5555677777778999999999876655332
Q ss_pred HHhhhcC-CcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccc
Q 011884 160 LQELQSA-VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238 (475)
Q Consensus 160 ~~~~~~~-~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
...+.++ .+|+|+|+.-+.+ ...+.++.++|+||-|++.-.++.. +.+.-..
T Consensus 358 l~~l~~G~~~ivVGTHALiQd------~V~F~~LgLVIiDEQHRFGV~QR~~----L~~KG~~----------------- 410 (677)
T COG1200 358 LEQLASGEIDIVVGTHALIQD------KVEFHNLGLVIIDEQHRFGVHQRLA----LREKGEQ----------------- 410 (677)
T ss_pred HHHHhCCCCCEEEEcchhhhc------ceeecceeEEEEeccccccHHHHHH----HHHhCCC-----------------
Confidence 2334444 7999999776643 3556789999999999986554421 1111100
Q ss_pred ccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHH
Q 011884 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 318 (475)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 318 (475)
.+..++||||+-|+.-.+...+--+-.++.. .|...+.....+-...+...++
T Consensus 411 ---------------------~Ph~LvMTATPIPRTLAlt~fgDldvS~IdE------lP~GRkpI~T~~i~~~~~~~v~ 463 (677)
T COG1200 411 ---------------------NPHVLVMTATPIPRTLALTAFGDLDVSIIDE------LPPGRKPITTVVIPHERRPEVY 463 (677)
T ss_pred ---------------------CCcEEEEeCCCchHHHHHHHhccccchhhcc------CCCCCCceEEEEeccccHHHHH
Confidence 2357899999988766654433222211111 1111111112233344555555
Q ss_pred HHHHhc--CCCeEEEEcCChHH--------HHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC
Q 011884 319 ALLQSL--GEEKCIVFTSSVES--------THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 388 (475)
Q Consensus 319 ~~l~~~--~~~~~lvf~~s~~~--------~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~ 388 (475)
+.+... ++.++.|.||-.++ +...+..|+.. -.+.++..+||.|+..++++++.+|++|+.+|||||.+
T Consensus 464 e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~-~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTV 542 (677)
T COG1200 464 ERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSF-LPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTV 542 (677)
T ss_pred HHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHH-cccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeE
Confidence 555433 68899999987754 45566666633 34578999999999999999999999999999999999
Q ss_pred cccCCCCCCCcEEEEecCC-CCHHHHHHHhhhccccCCCCcEEEEeechh----HHHHHHHHHHhcCCCCCccCCChhhh
Q 011884 389 MTRGMDVEGVNNVVNYDKP-AYIKTYIHRAGRTARAGQLGRCFTLLHKDE----VKRFKKLLQKADNDSCPIHSIPSSLI 463 (475)
Q Consensus 389 ~~~GiDip~~~~Vv~~~~~-~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~ 463 (475)
++.|||+|+++++|+.+.- ....++.|..||+||.+..+.|++++.... .++++-+.+..|. +.|.+..+
T Consensus 543 IEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DG-----F~IAE~DL 617 (677)
T COG1200 543 IEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDG-----FVIAEEDL 617 (677)
T ss_pred EEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCc-----ceehhhhH
Confidence 9999999999999998865 458899999999999999999999987655 3555555444443 45554444
No 65
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.1e-32 Score=280.10 Aligned_cols=313 Identities=18% Similarity=0.185 Sum_probs=204.1
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
.|||||.+|+..++..- ..+..++++|||+|||++.+.++.. + +.++||+||+..|++||.++|+++
T Consensus 255 ~LRpYQ~eAl~~~~~~g-r~r~GIIvLPtGaGKTlvai~aa~~-l------~k~tLILvps~~Lv~QW~~ef~~~----- 321 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVTAACT-V------KKSCLVLCTSAVSVEQWKQQFKMW----- 321 (732)
T ss_pred CcCHHHHHHHHHHHhcC-CCCCcEEEeCCCCChHHHHHHHHHH-h------CCCEEEEeCcHHHHHHHHHHHHHh-----
Confidence 68999999998876421 1147899999999999988765433 2 236999999999999976665443
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
.......+..++|+.... ..
T Consensus 322 ----------------------------------~~l~~~~I~~~tg~~k~~--------------------------~~ 341 (732)
T TIGR00603 322 ----------------------------------STIDDSQICRFTSDAKER--------------------------FH 341 (732)
T ss_pred ----------------------------------cCCCCceEEEEecCcccc--------------------------cc
Confidence 322234455566543211 01
Q ss_pred cCCcEEEeCchHHHHHhhcC-------CCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccc
Q 011884 165 SAVDILVATPGRLMDHINAT-------RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 165 ~~~~Iii~Tp~~l~~~l~~~-------~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
....|+|+|++++....... ..+.-..+++||+||||++....+...+..+ ..
T Consensus 342 ~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~il~~l----~a---------------- 401 (732)
T TIGR00603 342 GEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRRVLTIV----QA---------------- 401 (732)
T ss_pred cCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHHHHHhc----Cc----------------
Confidence 12479999999875432211 1122346889999999999765554433222 11
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccCccccccc-cccCceeeecCc-----cc---------c--CCchh
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL-DLHHPLFLTTGE-----TR---------Y--KLPER 300 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~-~~~~~~~~~~~~-----~~---------~--~~~~~ 300 (475)
...+++|||+.+.-...... .+..|.++...- .. . .....
T Consensus 402 -----------------------~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~ 458 (732)
T TIGR00603 402 -----------------------HCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPE 458 (732)
T ss_pred -----------------------CcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHH
Confidence 02467777776432211110 111111111100 00 0 00000
Q ss_pred hh----------hhhhhccCCCcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHH
Q 011884 301 LE----------SYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 368 (475)
Q Consensus 301 ~~----------~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r 368 (475)
.. ..........|...+..+++.+ .+.++||||.+...+..+++.|. +.++||.++..+|
T Consensus 459 ~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~--------~~~I~G~ts~~ER 530 (732)
T TIGR00603 459 FYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG--------KPFIYGPTSQQER 530 (732)
T ss_pred HHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC--------CceEECCCCHHHH
Confidence 00 0011122334556666666654 67899999999999998888773 3468999999999
Q ss_pred HHHHHHHHcC-CeEEEEEcCCcccCCCCCCCcEEEEecCC-CCHHHHHHHhhhccccCCCCcE-------EEEeechhHH
Q 011884 369 SKTLKAFREG-KIQVLVSSDAMTRGMDVEGVNNVVNYDKP-AYIKTYIHRAGRTARAGQLGRC-------FTLLHKDEVK 439 (475)
Q Consensus 369 ~~~~~~f~~g-~~~iLv~t~~~~~GiDip~~~~Vv~~~~~-~s~~~~~Q~~GR~~R~~~~g~~-------~~~~~~~~~~ 439 (475)
.++++.|++| ..++||+|.++.+|+|+|++++||+++.| .|...|+||+||++|.+..|.+ +.+++.+..+
T Consensus 531 ~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 531 MQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred HHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 9999999975 78999999999999999999999999987 6999999999999998755553 6677765554
Q ss_pred HH
Q 011884 440 RF 441 (475)
Q Consensus 440 ~~ 441 (475)
..
T Consensus 611 ~~ 612 (732)
T TIGR00603 611 MY 612 (732)
T ss_pred HH
Confidence 43
No 66
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=7.4e-32 Score=295.22 Aligned_cols=326 Identities=21% Similarity=0.307 Sum_probs=215.0
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+|+ .|+++|..+++.++ .|++++++||||+|||. +.++++..+.. ++.+++|++||++|+.|
T Consensus 77 ~G~-~pt~iQ~~~i~~il----~g~dv~i~ApTGsGKT~-f~l~~~~~l~~---~g~~alIL~PTreLa~Q--------- 138 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLL----LGESFAIIAPTGVGKTT-FGLVMSLYLAK---KGKKSYIIFPTRLLVEQ--------- 138 (1176)
T ss_pred cCC-CCcHHHHHHHHHHH----CCCcEEEEcCCCCCHHH-HHHHHHHHHHh---cCCeEEEEeccHHHHHH---------
Confidence 477 89999999876655 58999999999999996 44444444432 35689999999999999
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCch-HHHHHHHhhccccccCccCCchhH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI-ADEISELIKRPKLEAGICYDPEDV 159 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
+.+.++.++...++.+...+|+... ..+.. +.
T Consensus 139 ------------------------------i~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~-----------------~~ 171 (1176)
T PRK09401 139 ------------------------------VVEKLEKFGEKVGCGVKILYYHSSLKKKEKE-----------------EF 171 (1176)
T ss_pred ------------------------------HHHHHHHHhhhcCceEEEEEccCCcchhHHH-----------------HH
Confidence 4555566666667777777766542 11111 11
Q ss_pred HHhhh-cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHH-----------HHH-hhHHHHHHhcccccccc
Q 011884 160 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE-----------AYQ-AWLPTVLQLTRSDNENR 226 (475)
Q Consensus 160 ~~~~~-~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~-----------~~~-~~i~~i~~~~~~~~~~~ 226 (475)
...+. ..++|+|+||+.+.+++.. +....++++|+||||+++.. +|. ..++.++..++.....
T Consensus 172 ~~~l~~~~~~IlV~Tp~rL~~~~~~---l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~- 247 (1176)
T PRK09401 172 LERLKEGDFDILVTTSQFLSKNFDE---LPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKY- 247 (1176)
T ss_pred HHHHhcCCCCEEEECHHHHHHHHHh---ccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhccccccc-
Confidence 11222 3479999999999987763 44566999999999999853 332 4455666555431110
Q ss_pred ccccccccccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhh
Q 011884 227 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL 306 (475)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (475)
.........+. ..+........+.+++|||.++..... ..+.++..+....... ....+.+.+.
T Consensus 248 --------~~~~~~i~~l~-----~~i~~~~~~~~q~ilfSAT~~~~~~~~--~l~~~ll~~~v~~~~~-~~rnI~~~yi 311 (1176)
T PRK09401 248 --------EEIYEKIRELE-----EKIAELKDKKGVLVVSSATGRPRGNRV--KLFRELLGFEVGSPVF-YLRNIVDSYI 311 (1176)
T ss_pred --------chhhhHHHHHH-----HhhhhcccCCceEEEEeCCCCccchHH--HHhhccceEEecCccc-ccCCceEEEE
Confidence 00000000000 000000001347899999998642211 1112222222222211 2223333333
Q ss_pred hccCCCcHHHHHHHHHhcCCCeEEEEcCChHH---HHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEE
Q 011884 307 ICESKLKPLYLVALLQSLGEEKCIVFTSSVES---THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 383 (475)
Q Consensus 307 ~~~~~~~~~~l~~~l~~~~~~~~lvf~~s~~~---~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iL 383 (475)
... .+...+..++... +.++||||+++.. ++.+++.|+..+ +++..+||+| .+.+++|++|+.+||
T Consensus 312 ~~~--~k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~g---i~v~~~hg~l-----~~~l~~F~~G~~~VL 380 (1176)
T PRK09401 312 VDE--DSVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLG---INAELAISGF-----ERKFEKFEEGEVDVL 380 (1176)
T ss_pred Ecc--cHHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHCC---CcEEEEeCcH-----HHHHHHHHCCCCCEE
Confidence 222 5666777777665 4689999999777 999999999876 8999999999 234599999999999
Q ss_pred EE----cCCcccCCCCCC-CcEEEEecCCC------CHHHHHHHhhhccc
Q 011884 384 VS----SDAMTRGMDVEG-VNNVVNYDKPA------YIKTYIHRAGRTAR 422 (475)
Q Consensus 384 v~----t~~~~~GiDip~-~~~Vv~~~~~~------s~~~~~Q~~GR~~R 422 (475)
|+ |+++++|+|+|+ ++.||+++.|+ ....+.+++||+.+
T Consensus 381 Vatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 381 VGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred EEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 99 689999999999 89999999997 56789999999864
No 67
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.7e-31 Score=286.70 Aligned_cols=121 Identities=30% Similarity=0.444 Sum_probs=106.8
Q ss_pred CCcHHHHHHHHHh----cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccc--------cCHHHHHHHHHHHHcC
Q 011884 311 KLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL--------QRQSVRSKTLKAFREG 378 (475)
Q Consensus 311 ~~~~~~l~~~l~~----~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~--------~~~~~r~~~~~~f~~g 378 (475)
..|+..|.+++.+ ..++++||||+++..++.+++.|...+ +.+..+||. |++.+|.+++++|++|
T Consensus 346 ~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g 422 (773)
T PRK13766 346 HPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEG---IKAVRFVGQASKDGDKGMSQKEQIEILDKFRAG 422 (773)
T ss_pred ChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCC---CceEEEEccccccccCCCCHHHHHHHHHHHHcC
Confidence 3466667777755 467899999999999999999997655 667777775 8999999999999999
Q ss_pred CeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeec
Q 011884 379 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 435 (475)
Q Consensus 379 ~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 435 (475)
+.++||+|+++++|+|+|++++||+|++++++..++||+||+||.+ .|.+++++..
T Consensus 423 ~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~ 478 (773)
T PRK13766 423 EFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAK 478 (773)
T ss_pred CCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeC
Confidence 9999999999999999999999999999999999999999999987 6888888765
No 68
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=240.25 Aligned_cols=307 Identities=26% Similarity=0.407 Sum_probs=249.3
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 81 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 81 (475)
||.+|+..|.+++..++ -|.+++.+|..|.|||.++.++.++++... ..-..|+++|+||+||-|+..+
T Consensus 61 gfehpsevqhecipqai----lgmdvlcqaksgmgktavfvl~tlqqiepv-~g~vsvlvmchtrelafqi~~e------ 129 (387)
T KOG0329|consen 61 GFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQIEPV-DGQVSVLVMCHTRELAFQISKE------ 129 (387)
T ss_pred cCCCchHhhhhhhhHHh----hcchhheecccCCCceeeeehhhhhhcCCC-CCeEEEEEEeccHHHHHHHHHH------
Confidence 89999999998765554 499999999999999999999999988654 1234599999999999996543
Q ss_pred cccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHH
Q 011884 82 KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (475)
..+|.++.+ +.++.+++||.++..+...+
T Consensus 130 ------------------------------y~rfskymP--~vkvaVFfGG~~Ikkdee~l------------------- 158 (387)
T KOG0329|consen 130 ------------------------------YERFSKYMP--SVKVSVFFGGLFIKKDEELL------------------- 158 (387)
T ss_pred ------------------------------HHHHHhhCC--CceEEEEEcceeccccHHHH-------------------
Confidence 233455555 68999999999887765433
Q ss_pred hhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHH-HHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 162 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 162 ~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~-~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
.+.|+|+|+||++++.+.++ +.+++.++...|+|||+.+++ -..+..++.+++.++.
T Consensus 159 --k~~PhivVgTPGrilALvr~-k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~------------------- 216 (387)
T KOG0329|consen 159 --KNCPHIVVGTPGRILALVRN-RSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPH------------------- 216 (387)
T ss_pred --hCCCeEEEcCcHHHHHHHHh-ccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcc-------------------
Confidence 33579999999999988887 558899999999999998765 3567778888877655
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHH
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 320 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (475)
..|...+|||++.++...+...+-+|..+-........--.+++++.......|...+.++
T Consensus 217 -------------------~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dL 277 (387)
T KOG0329|consen 217 -------------------EKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDL 277 (387)
T ss_pred -------------------cceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhh
Confidence 2367889999999999999999999887777666666667788888888888888888888
Q ss_pred HHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcE
Q 011884 321 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 400 (475)
Q Consensus 321 l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~ 400 (475)
+....-.+++||+.|+.... |. .+ +|+|+.+++|+|+-.+++
T Consensus 278 Ld~LeFNQVvIFvKsv~Rl~----------------------------------f~---kr-~vat~lfgrgmdiervNi 319 (387)
T KOG0329|consen 278 LDVLEFNQVVIFVKSVQRLS----------------------------------FQ---KR-LVATDLFGRGMDIERVNI 319 (387)
T ss_pred hhhhhhcceeEeeehhhhhh----------------------------------hh---hh-hHHhhhhccccCccccee
Confidence 87666679999998766500 31 13 899999999999999999
Q ss_pred EEEecCCCCHHHHHHHhhhccccCCCCcEEEEee-chhHHHHHHHHHHhc
Q 011884 401 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRFKKLLQKAD 449 (475)
Q Consensus 401 Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~-~~~~~~~~~l~~~~~ 449 (475)
++.|+.|.+..+|.+|+||+||.|..|-++.++. .++.+.+..+.++.+
T Consensus 320 ~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~ 369 (387)
T KOG0329|consen 320 VFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFE 369 (387)
T ss_pred eeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhh
Confidence 9999999999999999999999999999999985 466777777766554
No 69
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=3.9e-31 Score=269.82 Aligned_cols=356 Identities=21% Similarity=0.211 Sum_probs=234.6
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 81 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 81 (475)
|. .|++.|..++..++ .|+ +.++.||+|||+++.+|++..... +..++|++||+.||.|
T Consensus 101 g~-~p~~VQ~~~~~~ll----~G~--Iae~~TGeGKTla~~lp~~~~al~----G~~v~VvTptreLA~q---------- 159 (656)
T PRK12898 101 GQ-RHFDVQLMGGLALL----SGR--LAEMQTGEGKTLTATLPAGTAALA----GLPVHVITVNDYLAER---------- 159 (656)
T ss_pred CC-CCChHHHHHHHHHh----CCC--eeeeeCCCCcHHHHHHHHHHHhhc----CCeEEEEcCcHHHHHH----------
Confidence 44 78999998865443 466 999999999999999999876543 4579999999999999
Q ss_pred cccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHH
Q 011884 82 KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (475)
..+.+..+...+++++++++|+.+....
T Consensus 160 -----------------------------dae~~~~l~~~lGlsv~~i~gg~~~~~r----------------------- 187 (656)
T PRK12898 160 -----------------------------DAELMRPLYEALGLTVGCVVEDQSPDER----------------------- 187 (656)
T ss_pred -----------------------------HHHHHHHHHhhcCCEEEEEeCCCCHHHH-----------------------
Confidence 5666677777789999999998653322
Q ss_pred hhhcCCcEEEeCchHH-HHHhhcCC------------------------CcccCCccEEEEcchHHHH-HH---------
Q 011884 162 ELQSAVDILVATPGRL-MDHINATR------------------------GFTLEHLCYLVVDETDRLL-RE--------- 206 (475)
Q Consensus 162 ~~~~~~~Iii~Tp~~l-~~~l~~~~------------------------~~~~~~~~~lVvDE~H~l~-~~--------- 206 (475)
....+++|+++|...| ++.++..- ..-...+.+.||||+|+++ +.
T Consensus 188 ~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~ 267 (656)
T PRK12898 188 RAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISA 267 (656)
T ss_pred HHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccceeeccCCCceEEEC
Confidence 2345789999998765 44433221 1223557899999999743 11
Q ss_pred --------HHHhhHHHHHHhccccccccc-------------------------cccccc------cccccccchhhh--
Q 011884 207 --------AYQAWLPTVLQLTRSDNENRF-------------------------SDASTF------LPSAFGSLKTIR-- 245 (475)
Q Consensus 207 --------~~~~~i~~i~~~~~~~~~~~~-------------------------~~~~~~------~~~~~~~~~~~~-- 245 (475)
....++..+...+........ ..|... ...+......++
T Consensus 268 ~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d 347 (656)
T PRK12898 268 PAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRD 347 (656)
T ss_pred CCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcC
Confidence 122233333333322111100 000000 000000000000
Q ss_pred -----cc----------cc-ccCCCC-----------------------------CCc-cchheeeeceeeccCcccccc
Q 011884 246 -----RC----------GV-ERGFKD-----------------------------KPY-PRLVKMVLSATLTQDPNKLAQ 279 (475)
Q Consensus 246 -----~~----------~~-~~~~~~-----------------------------~~~-~~~~~i~~SaT~~~~~~~~~~ 279 (475)
.. |. ..+..+ ..+ ...+...+|+|......++..
T Consensus 348 ~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~ 427 (656)
T PRK12898 348 EHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWS 427 (656)
T ss_pred CceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHH
Confidence 00 00 000000 000 012377889998766666665
Q ss_pred ccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeE
Q 011884 280 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK 357 (475)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~ 357 (475)
.+..++..+...... ... ..+.....+...|...+.+.+... .+.++||||+|+..++.+++.|.+.+ +++.
T Consensus 428 ~y~l~vv~IPt~kp~--~r~-~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~g---i~~~ 501 (656)
T PRK12898 428 VYGLPVVRIPTNRPS--QRR-HLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAG---LPHQ 501 (656)
T ss_pred HHCCCeEEeCCCCCc--cce-ecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC---CCEE
Confidence 555555444333222 211 112233445556777888877654 36789999999999999999999876 8999
Q ss_pred EeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCC---CCc-----EEEEecCCCCHHHHHHHhhhccccCCCCcE
Q 011884 358 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRC 429 (475)
Q Consensus 358 ~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip---~~~-----~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~ 429 (475)
.+||.++ +|+..+..|+.++..|+|||++.++|+||+ ++. +||.++.|.|...|.|++||+||.|++|.+
T Consensus 502 ~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s 579 (656)
T PRK12898 502 VLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSY 579 (656)
T ss_pred EeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEE
Confidence 9999865 466666677766778999999999999999 565 899999999999999999999999999999
Q ss_pred EEEeechhH
Q 011884 430 FTLLHKDEV 438 (475)
Q Consensus 430 ~~~~~~~~~ 438 (475)
+++++.+|.
T Consensus 580 ~~~is~eD~ 588 (656)
T PRK12898 580 EAILSLEDD 588 (656)
T ss_pred EEEechhHH
Confidence 999986553
No 70
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.98 E-value=1.5e-30 Score=268.52 Aligned_cols=370 Identities=18% Similarity=0.196 Sum_probs=227.5
Q ss_pred ccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccc
Q 011884 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIF 85 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~ 85 (475)
++|+|.+++..+ ..++..+++++||+|||+++.+|++..... +..|+|++|++.||.|
T Consensus 69 lrpydVQlig~l----~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~----g~~V~VVTpn~yLA~R-------------- 126 (762)
T TIGR03714 69 MFPYDVQVLGAI----VLHQGNIAEMKTGEGKTLTATMPLYLNALT----GKGAMLVTTNDYLAKR-------------- 126 (762)
T ss_pred CCccHHHHHHHH----HhcCCceeEecCCcchHHHHHHHHHHHhhc----CCceEEeCCCHHHHHH--------------
Confidence 466666654433 224447999999999999999997655543 3469999999999999
Q ss_pred cccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhc
Q 011884 86 GLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 165 (475)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (475)
+.+.+..+...+++++.+.+++...... ..-......
T Consensus 127 -------------------------dae~m~~l~~~LGLsv~~~~~~s~~~~~------------------~~~~rr~~y 163 (762)
T TIGR03714 127 -------------------------DAEEMGPVYEWLGLTVSLGVVDDPDEEY------------------DANEKRKIY 163 (762)
T ss_pred -------------------------HHHHHHHHHhhcCCcEEEEECCCCcccc------------------CHHHHHHhC
Confidence 5666777777788988887765221100 000112235
Q ss_pred CCcEEEeCchHH-HHHhhcC-----CCcccCCccEEEEcchHHHHHH----------------HHHhhHHHHHHhccccc
Q 011884 166 AVDILVATPGRL-MDHINAT-----RGFTLEHLCYLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDN 223 (475)
Q Consensus 166 ~~~Iii~Tp~~l-~~~l~~~-----~~~~~~~~~~lVvDE~H~l~~~----------------~~~~~i~~i~~~~~~~~ 223 (475)
+++|+++||+.| ++.+... ....+..+.++|+||||+++-. ..+..+..+...+....
T Consensus 164 ~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~ 243 (762)
T TIGR03714 164 NSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDV 243 (762)
T ss_pred CCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCC
Confidence 689999999999 5555321 2244678999999999997532 12223333443333211
Q ss_pred cccc---------cc-cccccccc------c-c-----------cc---hhhh-------ccc-----------------
Q 011884 224 ENRF---------SD-ASTFLPSA------F-G-----------SL---KTIR-------RCG----------------- 248 (475)
Q Consensus 224 ~~~~---------~~-~~~~~~~~------~-~-----------~~---~~~~-------~~~----------------- 248 (475)
.... .+ +......+ + . .. ..+. ..+
T Consensus 244 dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~ 323 (762)
T TIGR03714 244 DYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTK 323 (762)
T ss_pred CeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCC
Confidence 0000 00 00000000 0 0 00 0000 000
Q ss_pred --------------cccC--------CCC-CCc-cchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhh
Q 011884 249 --------------VERG--------FKD-KPY-PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 304 (475)
Q Consensus 249 --------------~~~~--------~~~-~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (475)
++.. +.- ..+ ...+..++|+|......++.. .++..++......+....... .
T Consensus 324 ~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~--iY~l~v~~IPt~kp~~r~d~~-d 400 (762)
T TIGR03714 324 LQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE--TYSLSVVKIPTNKPIIRIDYP-D 400 (762)
T ss_pred cchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH--HhCCCEEEcCCCCCeeeeeCC-C
Confidence 0000 000 000 012255667775433333332 222223333333322222111 1
Q ss_pred hhhccCCCcHHHHHHHHHh--cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEE
Q 011884 305 KLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 382 (475)
Q Consensus 305 ~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~i 382 (475)
....+...|...+.+.+.+ ..+.++||||+|++.++.+++.|.+.+ +++..+||.++..++..+..+++.| .|
T Consensus 401 ~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~g---i~~~~L~a~~~~~E~~ii~~ag~~g--~V 475 (762)
T TIGR03714 401 KIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREG---IPHNLLNAQNAAKEAQIIAEAGQKG--AV 475 (762)
T ss_pred eEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCC---CCEEEecCCChHHHHHHHHHcCCCC--eE
Confidence 2333444567777776654 467899999999999999999999876 8899999999988877666666554 89
Q ss_pred EEEcCCcccCCCCC---------CCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhH-------HHHHHHHH
Q 011884 383 LVSSDAMTRGMDVE---------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQ 446 (475)
Q Consensus 383 Lv~t~~~~~GiDip---------~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~~l~~ 446 (475)
+|||++.++|+|+| ++.+|+.++.|..... .|++||+||.|++|.++++++.+|. +.+..+++
T Consensus 476 lIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l~~~~~~~~~~~~~~ 554 (762)
T TIGR03714 476 TVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWLKKYYK 554 (762)
T ss_pred EEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhhhhhcchHHHHHHHH
Confidence 99999999999999 8999999999987777 9999999999999999999876443 34455655
Q ss_pred Hhc
Q 011884 447 KAD 449 (475)
Q Consensus 447 ~~~ 449 (475)
.+.
T Consensus 555 ~~~ 557 (762)
T TIGR03714 555 KYS 557 (762)
T ss_pred HcC
Confidence 543
No 71
>PRK14701 reverse gyrase; Provisional
Probab=99.98 E-value=6.8e-32 Score=301.34 Aligned_cols=353 Identities=18% Similarity=0.219 Sum_probs=229.7
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+|| +|++.|.+++..++. |+++++.||||+|||+.++++++... .++.+++|++||++|+.|+++.
T Consensus 76 ~G~-~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~----~~g~~aLVl~PTreLa~Qi~~~----- 141 (1638)
T PRK14701 76 TGF-EFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLA----LKGKKCYIILPTTLLVKQTVEK----- 141 (1638)
T ss_pred hCC-CCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHH----hcCCeEEEEECHHHHHHHHHHH-----
Confidence 589 699999998776655 89999999999999996555444322 1355899999999999996554
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhccc--ccceEeEccCCCchHHHHHHHhhccccccCccCCchh
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPA--VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 158 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
++.++.. .++.+..++|+.+..++...+
T Consensus 142 ----------------------------------l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~---------------- 171 (1638)
T PRK14701 142 ----------------------------------IESFCEKANLDVRLVYYHSNLRKKEKEEFL---------------- 171 (1638)
T ss_pred ----------------------------------HHHHHhhcCCceeEEEEeCCCCHHHHHHHH----------------
Confidence 3333333 356778888887765553221
Q ss_pred HHHhhhc-CCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHH-----------HHHhhHHH-HHHhccccccc
Q 011884 159 VLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE-----------AYQAWLPT-VLQLTRSDNEN 225 (475)
Q Consensus 159 ~~~~~~~-~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~-----------~~~~~i~~-i~~~~~~~~~~ 225 (475)
..+.. .++|+|+||+.+.+.+... ...+++++|+||||+++.+ +|.+.+.. ++..+......
T Consensus 172 --~~l~~g~~dILV~TPgrL~~~~~~l---~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~ 246 (1638)
T PRK14701 172 --ERIENGDFDILVTTAQFLARNFPEM---KHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQG 246 (1638)
T ss_pred --HHHhcCCCCEEEECCchhHHhHHHH---hhCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhccccc
Confidence 12223 4799999999998766542 1267999999999998752 33333322 11121100000
Q ss_pred cccccccccccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhh
Q 011884 226 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYK 305 (475)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (475)
...+ . +..+ ..+.......+......+++|||.++.... . ..+.++..+......... ..+.+.+
T Consensus 247 ~~~~---~-------~~~~--~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~-~-~l~~~~l~f~v~~~~~~l-r~i~~~y 311 (1638)
T PRK14701 247 NIED---A-------MEKR--EILNKEIEKIGNKIGCLIVASATGKAKGDR-V-KLYRELLGFEVGSGRSAL-RNIVDVY 311 (1638)
T ss_pred ccch---h-------hhhh--hhhhhhhhhcCCCccEEEEEecCCCchhHH-H-HHhhcCeEEEecCCCCCC-CCcEEEE
Confidence 0000 0 0000 000000000011111256789999864211 1 122444444444433222 2233333
Q ss_pred hhccCCCcHHHHHHHHHhcCCCeEEEEcCChHH---HHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEE
Q 011884 306 LICESKLKPLYLVALLQSLGEEKCIVFTSSVES---THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 382 (475)
Q Consensus 306 ~~~~~~~~~~~l~~~l~~~~~~~~lvf~~s~~~---~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~i 382 (475)
.......+ ..+..++... +.++||||+++.. |+.+++.|.+.+ +++..+||+ |.+.+++|++|+.+|
T Consensus 312 i~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~G---i~a~~~h~~-----R~~~l~~F~~G~~~V 381 (1638)
T PRK14701 312 LNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDG---FKIELVSAK-----NKKGFDLFEEGEIDY 381 (1638)
T ss_pred EECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCC---CeEEEecch-----HHHHHHHHHcCCCCE
Confidence 22222223 4566777665 5689999999875 589999999866 999999985 889999999999999
Q ss_pred EEEc----CCcccCCCCCC-CcEEEEecCCC---CHHHHHHH-------------hhhccccCCCCcEEEEeechhHHHH
Q 011884 383 LVSS----DAMTRGMDVEG-VNNVVNYDKPA---YIKTYIHR-------------AGRTARAGQLGRCFTLLHKDEVKRF 441 (475)
Q Consensus 383 Lv~t----~~~~~GiDip~-~~~Vv~~~~~~---s~~~~~Q~-------------~GR~~R~~~~g~~~~~~~~~~~~~~ 441 (475)
||+| +++++|||+|+ ++.||+++.|+ |+..+.|- .||++|.|....+...+...+...+
T Consensus 382 LVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~ 461 (1638)
T PRK14701 382 LIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFL 461 (1638)
T ss_pred EEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHH
Confidence 9999 58899999999 99999999998 76655554 4999999988888766777888888
Q ss_pred HHHHHH
Q 011884 442 KKLLQK 447 (475)
Q Consensus 442 ~~l~~~ 447 (475)
++++.+
T Consensus 462 ~~~l~~ 467 (1638)
T PRK14701 462 RSILKD 467 (1638)
T ss_pred HHHhcc
Confidence 877766
No 72
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.9e-30 Score=270.35 Aligned_cols=357 Identities=18% Similarity=0.210 Sum_probs=227.1
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 81 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 81 (475)
|. .|++.|..+.- .+..|+ +.++.||+|||+++.+|++..... +..|+|++||+.||.|
T Consensus 76 g~-~p~~vQl~~~~----~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~----G~~v~VvTpt~~LA~q---------- 134 (790)
T PRK09200 76 GM-RPYDVQLIGAL----VLHEGN--IAEMQTGEGKTLTATMPLYLNALE----GKGVHLITVNDYLAKR---------- 134 (790)
T ss_pred CC-CCchHHHHhHH----HHcCCc--eeeecCCCcchHHHHHHHHHHHHc----CCCeEEEeCCHHHHHH----------
Confidence 44 67777866543 223344 999999999999999998755443 4579999999999999
Q ss_pred cccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHH
Q 011884 82 KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (475)
..+.+..+..++++++++++|+.+...+.
T Consensus 135 -----------------------------d~e~~~~l~~~lGl~v~~i~g~~~~~~~r---------------------- 163 (790)
T PRK09200 135 -----------------------------DAEEMGQVYEFLGLTVGLNFSDIDDASEK---------------------- 163 (790)
T ss_pred -----------------------------HHHHHHHHHhhcCCeEEEEeCCCCcHHHH----------------------
Confidence 66677888888899999999987732221
Q ss_pred hhhcCCcEEEeCchHH-HHHhhcC-----CCcccCCccEEEEcchHHHH-HH---------------HHHhhHHHHHHhc
Q 011884 162 ELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLCYLVVDETDRLL-RE---------------AYQAWLPTVLQLT 219 (475)
Q Consensus 162 ~~~~~~~Iii~Tp~~l-~~~l~~~-----~~~~~~~~~~lVvDE~H~l~-~~---------------~~~~~i~~i~~~~ 219 (475)
....+++|+++||..+ ++.+... ....+..+.++|+||+|+++ +. ..+..+..+...+
T Consensus 164 ~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l 243 (790)
T PRK09200 164 KAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTL 243 (790)
T ss_pred HHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHHhc
Confidence 1224579999999887 4444332 12345778999999999853 11 2233333444333
Q ss_pred cccccccccc--------------------cccccc-----------cccccchhhhc-------cc----------c-c
Q 011884 220 RSDNENRFSD--------------------ASTFLP-----------SAFGSLKTIRR-------CG----------V-E 250 (475)
Q Consensus 220 ~~~~~~~~~~--------------------~~~~~~-----------~~~~~~~~~~~-------~~----------~-~ 250 (475)
.......... ...... .+......+++ .+ . .
T Consensus 244 ~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~ 323 (790)
T PRK09200 244 EEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVL 323 (790)
T ss_pred ccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCC
Confidence 2210000000 000000 00000000000 00 0 0
Q ss_pred cCCCC-----------------------------CCc-cchheeeeceeeccCccccccccccCceeeecCccccCCchh
Q 011884 251 RGFKD-----------------------------KPY-PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 300 (475)
Q Consensus 251 ~~~~~-----------------------------~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (475)
.+..+ ..+ ...+..++|+|......++.. .+...++......+.....
T Consensus 324 ~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~--~Y~l~v~~IPt~kp~~r~d 401 (790)
T PRK09200 324 PGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFE--VYNMEVVQIPTNRPIIRID 401 (790)
T ss_pred CCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHH--HhCCcEEECCCCCCccccc
Confidence 00000 000 011256677776433333322 1222223333332222211
Q ss_pred hhhhhhhccCCCcHHHHHHHHHh--cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcC
Q 011884 301 LESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 378 (475)
Q Consensus 301 ~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g 378 (475)
... ....+...|...+...+.. ..+.++||||+|+..++.++..|.+.+ +++..+||.++..++..+...+..|
T Consensus 402 ~~~-~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~g---i~~~~L~~~~~~~e~~~i~~ag~~g 477 (790)
T PRK09200 402 YPD-KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAG---IPHNLLNAKNAAKEAQIIAEAGQKG 477 (790)
T ss_pred CCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC---CCEEEecCCccHHHHHHHHHcCCCC
Confidence 111 1223445577777777754 367899999999999999999999876 8999999999887777776666554
Q ss_pred CeEEEEEcCCcccCCCC---CCCc-----EEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhH
Q 011884 379 KIQVLVSSDAMTRGMDV---EGVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 438 (475)
Q Consensus 379 ~~~iLv~t~~~~~GiDi---p~~~-----~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 438 (475)
+|+|||++.++|+|+ |++. +||.++.|.|...|.||+||+||.|++|.++++++.+|.
T Consensus 478 --~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 478 --AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred --eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 899999999999999 6888 999999999999999999999999999999999875443
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=4.9e-30 Score=251.72 Aligned_cols=321 Identities=19% Similarity=0.177 Sum_probs=188.4
Q ss_pred hhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccccccc
Q 011884 9 VQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLI 88 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 88 (475)
+|.++++.+.+. +...++++||||||||.+++++++. .+.++++++|+++|++|+++.++++
T Consensus 1 hQ~~~~~~~~~~--~~~~~~i~apTGsGKT~~~~~~~l~-------~~~~~~~~~P~~aL~~~~~~~~~~~--------- 62 (357)
T TIGR03158 1 HQVATFEALQSK--DADIIFNTAPTGAGKTLAWLTPLLH-------GENDTIALYPTNALIEDQTEAIKEF--------- 62 (357)
T ss_pred CHHHHHHHHHcC--CCCEEEEECCCCCCHHHHHHHHHHH-------cCCCEEEEeChHHHHHHHHHHHHHH---------
Confidence 588888776551 1135889999999999999888774 1336899999999999987764443
Q ss_pred chhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhh-hcCC
Q 011884 89 ADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAV 167 (475)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 167 (475)
+..+....+..+..+.|..... ...+.................+... ...+
T Consensus 63 --------------------------~~~~~~~~~~~v~~~~g~~~~d--~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p 114 (357)
T TIGR03158 63 --------------------------VDVFKPERDVNLLHVSKATLKD--IKEYANDKVGSSKGEKLYNLLRNPIGTSTP 114 (357)
T ss_pred --------------------------HHhcCCCCCceEEEecCCchHH--HHHhhhhhcccCccchhhhhHHHHHhcCCC
Confidence 3333333355666666653322 1111000000000000000111112 2457
Q ss_pred cEEEeCchHHHHHhhcCC---C----cccCCccEEEEcchHHHHHHHHHhhHH--HHHHhcccccccccccccccccccc
Q 011884 168 DILVATPGRLMDHINATR---G----FTLEHLCYLVVDETDRLLREAYQAWLP--TVLQLTRSDNENRFSDASTFLPSAF 238 (475)
Q Consensus 168 ~Iii~Tp~~l~~~l~~~~---~----~~~~~~~~lVvDE~H~l~~~~~~~~i~--~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
.|++|||+.+..+++... . ..+.+++++|+||+|.+........+. .....+....
T Consensus 115 ~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~--------------- 179 (357)
T TIGR03158 115 IILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFE--------------- 179 (357)
T ss_pred CEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhh---------------
Confidence 899999999976654321 1 124789999999999875332211110 1111110000
Q ss_pred ccchhhhccccccCCCCCCccchheeeeceeeccCcccccccc--ccCceeeecCcc--ccCCc---------------h
Q 011884 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD--LHHPLFLTTGET--RYKLP---------------E 299 (475)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~---------------~ 299 (475)
...+++++|||+++......... ...+.....+.. ....| .
T Consensus 180 --------------------~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (357)
T TIGR03158 180 --------------------CRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLP 239 (357)
T ss_pred --------------------cCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceecc
Confidence 01268999999987544433221 222222111110 00000 0
Q ss_pred hhhhhhhhccCCCcHHHHHHH---H----HhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHH
Q 011884 300 RLESYKLICESKLKPLYLVAL---L----QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 372 (475)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~~---l----~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~ 372 (475)
.+...... ....+...+..+ + ++..++++||||+|+..++.+++.|++.+ .+..+..+||.+++.+|.+.
T Consensus 240 ~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~-~~~~~~~l~g~~~~~~R~~~- 316 (357)
T TIGR03158 240 PVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG-LGDDIGRITGFAPKKDRERA- 316 (357)
T ss_pred ceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC-CCceEEeeecCCCHHHHHHh-
Confidence 11111111 222233323222 2 22356799999999999999999998753 22567889999999888654
Q ss_pred HHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhcc
Q 011884 373 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 421 (475)
Q Consensus 373 ~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~ 421 (475)
++.++||||+++++|+|+|.. .|| ++ |.+...|+||+||+|
T Consensus 317 -----~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 -----MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -----ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 378999999999999999976 555 44 788999999999986
No 74
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.97 E-value=8.1e-30 Score=261.50 Aligned_cols=365 Identities=19% Similarity=0.164 Sum_probs=229.1
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
.|++.|.-+.. .+..| .+.+++||+|||+++.+|++-.... +..|.+++||+.||.|
T Consensus 56 ~p~~vQlig~~----~l~~G--~Iaem~TGeGKTLva~lpa~l~aL~----G~~V~VvTpt~~LA~q------------- 112 (745)
T TIGR00963 56 RPFDVQLIGGI----ALHKG--KIAEMKTGEGKTLTATLPAYLNALT----GKGVHVVTVNDYLAQR------------- 112 (745)
T ss_pred CccchHHhhhh----hhcCC--ceeeecCCCccHHHHHHHHHHHHHh----CCCEEEEcCCHHHHHH-------------
Confidence 56777755432 22234 4999999999999999998543333 3369999999999999
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
.++.+..+...+++++++++|+.+...... .
T Consensus 113 --------------------------dae~~~~l~~~LGLsv~~i~g~~~~~~r~~-----------------------~ 143 (745)
T TIGR00963 113 --------------------------DAEWMGQVYRFLGLSVGLILSGMSPEERRE-----------------------A 143 (745)
T ss_pred --------------------------HHHHHHHHhccCCCeEEEEeCCCCHHHHHH-----------------------h
Confidence 666778888888999999999877544322 2
Q ss_pred cCCcEEEeCchHH-HHHhhcCC-----CcccCCccEEEEcchHHHHH-HHHHh---------------hHHHHHHhcccc
Q 011884 165 SAVDILVATPGRL-MDHINATR-----GFTLEHLCYLVVDETDRLLR-EAYQA---------------WLPTVLQLTRSD 222 (475)
Q Consensus 165 ~~~~Iii~Tp~~l-~~~l~~~~-----~~~~~~~~~lVvDE~H~l~~-~~~~~---------------~i~~i~~~~~~~ 222 (475)
..++|+++||..| +++++... ...+..+.++|+||+|+++- ..+.+ ....+.+.+...
T Consensus 144 y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~ 223 (745)
T TIGR00963 144 YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKE 223 (745)
T ss_pred cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccC
Confidence 3479999999999 88877642 24577899999999999763 22211 112222222211
Q ss_pred ccccccccccccccccccc-hhhhccccccCCCC----------------------------------------------
Q 011884 223 NENRFSDASTFLPSAFGSL-KTIRRCGVERGFKD---------------------------------------------- 255 (475)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------------------------------------------- 255 (475)
......+-.........+. +.....++...+..
T Consensus 224 ~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr 303 (745)
T TIGR00963 224 VHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGR 303 (745)
T ss_pred CCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCC
Confidence 0000000000000000000 00000000000000
Q ss_pred -------------------------------CCc-cchheeeeceeeccCccccccccccCceeeecCccccCCchhhhh
Q 011884 256 -------------------------------KPY-PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES 303 (475)
Q Consensus 256 -------------------------------~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (475)
..+ ...+..++|+|......++...+ ...++......+........
T Consensus 304 ~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY--~l~vv~IPtnkp~~R~d~~d 381 (745)
T TIGR00963 304 RWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIY--NLEVVVVPTNRPVIRKDLSD 381 (745)
T ss_pred ccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHh--CCCEEEeCCCCCeeeeeCCC
Confidence 000 00124555666543322222211 11122222222221111111
Q ss_pred hhhhccCCCcHHHHHHHHH--hcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeE
Q 011884 304 YKLICESKLKPLYLVALLQ--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 381 (475)
Q Consensus 304 ~~~~~~~~~~~~~l~~~l~--~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 381 (475)
....+...|+..+.+.+. ...+.++||||+|++.++.+++.|.+.+ ++...+|+. ..+|+..+..|+.+...
T Consensus 382 -~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~g---i~~~~Lna~--q~~rEa~ii~~ag~~g~ 455 (745)
T TIGR00963 382 -LVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERG---IPHNVLNAK--NHEREAEIIAQAGRKGA 455 (745)
T ss_pred -eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcC---CCeEEeeCC--hHHHHHHHHHhcCCCce
Confidence 112223345555555442 3378899999999999999999999877 888899998 67899999999999999
Q ss_pred EEEEcCCcccCCCCCC-------CcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhH-------HHHHHHHHH
Q 011884 382 VLVSSDAMTRGMDVEG-------VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQK 447 (475)
Q Consensus 382 iLv~t~~~~~GiDip~-------~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~~l~~~ 447 (475)
|+|||++.++|+|++. ..+||.++.|.|...+.|++||+||.|.+|.+.++++.+|- +.+.++++.
T Consensus 456 VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~~~~~~~~~~~~~~~ 535 (745)
T TIGR00963 456 VTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFGGDRLEGLMRR 535 (745)
T ss_pred EEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHHHhhhhHHHHHHHHH
Confidence 9999999999999997 45999999999999999999999999999999999876443 234455555
Q ss_pred hc
Q 011884 448 AD 449 (475)
Q Consensus 448 ~~ 449 (475)
+.
T Consensus 536 ~~ 537 (745)
T TIGR00963 536 LG 537 (745)
T ss_pred cC
Confidence 43
No 75
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=8.8e-31 Score=276.70 Aligned_cols=333 Identities=22% Similarity=0.293 Sum_probs=249.0
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
||+..+++.|.+|+. .++.|+++++.+|||.||+++|.+|++- -++..|||.|-.+|..+....+
T Consensus 260 Fg~~~FR~~Q~eaI~----~~l~Gkd~fvlmpTG~GKSLCYQlPA~l-------~~gitvVISPL~SLm~DQv~~L---- 324 (941)
T KOG0351|consen 260 FGHKGFRPNQLEAIN----ATLSGKDCFVLMPTGGGKSLCYQLPALL-------LGGVTVVISPLISLMQDQVTHL---- 324 (941)
T ss_pred hccccCChhHHHHHH----HHHcCCceEEEeecCCceeeEeeccccc-------cCCceEEeccHHHHHHHHHHhh----
Confidence 689999999999876 4456999999999999999999999864 2337999999999988643322
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
...++....+.++....+....+
T Consensus 325 ---------------------------------------~~~~I~a~~L~s~q~~~~~~~i~------------------ 347 (941)
T KOG0351|consen 325 ---------------------------------------SKKGIPACFLSSIQTAAERLAIL------------------ 347 (941)
T ss_pred ---------------------------------------hhcCcceeeccccccHHHHHHHH------------------
Confidence 23467777777776654443222
Q ss_pred Hhhhc---CCcEEEeCchHHHHHhhcCC-CcccCC---ccEEEEcchHHHHHHH--HHhhHHHHHHhccccccccccccc
Q 011884 161 QELQS---AVDILVATPGRLMDHINATR-GFTLEH---LCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDAS 231 (475)
Q Consensus 161 ~~~~~---~~~Iii~Tp~~l~~~l~~~~-~~~~~~---~~~lVvDE~H~l~~~~--~~~~i~~i~~~~~~~~~~~~~~~~ 231 (475)
+.+.. ..+|++.||+++........ ...+.. +.++|+||||+...++ |++....+....
T Consensus 348 q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~------------ 415 (941)
T KOG0351|consen 348 QKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLR------------ 415 (941)
T ss_pred HHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHH------------
Confidence 22332 35899999999854322111 122333 8999999999986443 121111111110
Q ss_pred cccccccccchhhhccccccCCCCCCccchheeeeceeeccCccc--cccccccCceeeecCccccCCchhhhhhhhhcc
Q 011884 232 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLICE 309 (475)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (475)
..++..+++.++||.+..+.. +..+.+.++.++....++..+. ..+....
T Consensus 416 ------------------------~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~----yeV~~k~ 467 (941)
T KOG0351|consen 416 ------------------------IRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLK----YEVSPKT 467 (941)
T ss_pred ------------------------hhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCce----EEEEecc
Confidence 112235789999999877665 5567777887766655554431 1111111
Q ss_pred -CCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC
Q 011884 310 -SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 388 (475)
Q Consensus 310 -~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~ 388 (475)
...-...+...-..+..+.+||||.++..|+.++..|...+ .....||+||+..+|+.+..+|..++.+|+|||=+
T Consensus 468 ~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~---~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVA 544 (941)
T KOG0351|consen 468 DKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLG---KSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVA 544 (941)
T ss_pred CccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhc---hhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEee
Confidence 12223333444445578899999999999999999999877 89999999999999999999999999999999999
Q ss_pred cccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHh
Q 011884 389 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 448 (475)
Q Consensus 389 ~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~ 448 (475)
+++|||.|+|++|+++.+|+|...|.|-+|||||.|....|++|+...|...++.++...
T Consensus 545 FGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 545 FGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred ccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999999999998877
No 76
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=2.6e-29 Score=266.49 Aligned_cols=385 Identities=19% Similarity=0.192 Sum_probs=224.2
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
+|+|+|..+.+. . ....-++|.||||+|||.+++.++...+... ...+++|..||+++++||++++.++
T Consensus 286 ~p~p~Q~~~~~~--~--~~pgl~ileApTGsGKTEAAL~~A~~l~~~~--~~~gi~~aLPT~Atan~m~~Rl~~~----- 354 (878)
T PRK09694 286 QPRQLQTLVDAL--P--LQPGLTIIEAPTGSGKTEAALAYAWRLIDQG--LADSIIFALPTQATANAMLSRLEAL----- 354 (878)
T ss_pred CChHHHHHHHhh--c--cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCCeEEEECcHHHHHHHHHHHHHHH-----
Confidence 799999876321 1 2356789999999999999888766544433 2347999999999999998886543
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
++.... ..++.+.+|..........+.........-..........+.
T Consensus 355 ------------------------------~~~~f~--~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 402 (878)
T PRK09694 355 ------------------------------ASKLFP--SPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLS 402 (878)
T ss_pred ------------------------------HHHhcC--CCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHh
Confidence 222222 245677777665433222211100000000000000011111
Q ss_pred ------cCCcEEEeCchHHHHHhhcCCCcccCCc----cEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccc
Q 011884 165 ------SAVDILVATPGRLMDHINATRGFTLEHL----CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 234 (475)
Q Consensus 165 ------~~~~Iii~Tp~~l~~~l~~~~~~~~~~~----~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 234 (475)
--.+|+|||.++++......+...+..+ ++|||||+|.+.. .....+..+++.+...
T Consensus 403 ~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAyD~-ym~~lL~~~L~~l~~~------------ 469 (878)
T PRK09694 403 QSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAYDA-YMYGLLEAVLKAQAQA------------ 469 (878)
T ss_pred hhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhCCH-HHHHHHHHHHHHHHhc------------
Confidence 1268999999998765544332222222 5899999998843 3345566666544321
Q ss_pred ccccccchhhhccccccCCCCCCccchheeeeceeeccCccc-ccccc-c--------cCceeeecCc---cccCCc---
Q 011884 235 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK-LAQLD-L--------HHPLFLTTGE---TRYKLP--- 298 (475)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~-~~~~~-~--------~~~~~~~~~~---~~~~~~--- 298 (475)
..+.|++|||++..... +.... . ..|.+..... ......
T Consensus 470 -------------------------g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~ 524 (878)
T PRK09694 470 -------------------------GGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHP 524 (878)
T ss_pred -------------------------CCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeeccccc
Confidence 12579999999865443 11110 0 0111100000 000000
Q ss_pred h--hhhhhhhh----ccCCCc-HHHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHH-
Q 011884 299 E--RLESYKLI----CESKLK-PLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS- 369 (475)
Q Consensus 299 ~--~~~~~~~~----~~~~~~-~~~l~~~l~~-~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~- 369 (475)
. ........ ...... ...+..+++. ..+++++|||||++.|+.+++.|++......++..+||++...+|.
T Consensus 525 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~ 604 (878)
T PRK09694 525 EQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRRE 604 (878)
T ss_pred cccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHH
Confidence 0 00000000 011111 2333333332 3567899999999999999999997643346789999999999994
Q ss_pred ---HHHHHH-HcCC---eEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCC----C----cEEEEee
Q 011884 370 ---KTLKAF-REGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL----G----RCFTLLH 434 (475)
Q Consensus 370 ---~~~~~f-~~g~---~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~----g----~~~~~~~ 434 (475)
++++.| ++|+ ..|||+|++++.|+|++ .+++|....| +..++||+||++|.+.. | .++++..
T Consensus 605 ~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdlaP--idsLiQRaGR~~R~~~~~rp~~~~~p~~~V~~p 681 (878)
T PRK09694 605 KEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQLCP--VDLLFQRLGRLHRHHRKYRPAGFEIPVATVLLP 681 (878)
T ss_pred HHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECCCC--HHHHHHHHhccCCCCCCCCCCCCcCceEEEEec
Confidence 567788 5565 47999999999999995 7888887666 78999999999998752 2 1222211
Q ss_pred c-----------hhHHHHHHHHHHhcCCCCCccCCChhhhhhhhcccccC
Q 011884 435 K-----------DEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 473 (475)
Q Consensus 435 ~-----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (475)
. .+...+.+-.+.+........++|+.....+..+|...
T Consensus 682 ~~~~~~~~~~VY~~~~~L~rT~~~L~~~~~~~~~~P~~~~~lve~vY~~~ 731 (878)
T PRK09694 682 DGEGYGRSGYIYGNTRVLWRTEQLLEEHNAASLFFPDAYREWIESVYDEA 731 (878)
T ss_pred cccccCCceeecCchHHHHHHHHHHHhcCCCCcCChHHHHHHHHHHhCCC
Confidence 1 11112222222222222224678999888888888654
No 77
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=1.1e-29 Score=266.76 Aligned_cols=317 Identities=18% Similarity=0.186 Sum_probs=244.6
Q ss_pred CCCCcccchhhhhhhhhcCCCCCC--CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~--~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
|+| ..++-|..|++.+...+.++ +|=||||..|.|||.+++-++..+++.+ +.|.++|||.-||+|-+++
T Consensus 591 FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G----KQVAvLVPTTlLA~QHy~t--- 662 (1139)
T COG1197 591 FPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG----KQVAVLVPTTLLAQQHYET--- 662 (1139)
T ss_pred CCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC----CeEEEEcccHHhHHHHHHH---
Confidence 566 56999999999999999888 6889999999999999999998887654 4799999999999995554
Q ss_pred ccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchh
Q 011884 79 YCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 158 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
|++-.....+++..+..-.+..+....+
T Consensus 663 ------------------------------------FkeRF~~fPV~I~~LSRF~s~kE~~~il---------------- 690 (1139)
T COG1197 663 ------------------------------------FKERFAGFPVRIEVLSRFRSAKEQKEIL---------------- 690 (1139)
T ss_pred ------------------------------------HHHHhcCCCeeEEEecccCCHHHHHHHH----------------
Confidence 4444455577887777666555554332
Q ss_pred HHHhhhcC-CcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccc
Q 011884 159 VLQELQSA-VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 159 ~~~~~~~~-~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
..+..+ .||+|+|+.-| . +...+.++.++||||-|++.-. -.+.++.+-.
T Consensus 691 --~~la~G~vDIvIGTHrLL----~--kdv~FkdLGLlIIDEEqRFGVk-~KEkLK~Lr~-------------------- 741 (1139)
T COG1197 691 --KGLAEGKVDIVIGTHRLL----S--KDVKFKDLGLLIIDEEQRFGVK-HKEKLKELRA-------------------- 741 (1139)
T ss_pred --HHHhcCCccEEEechHhh----C--CCcEEecCCeEEEechhhcCcc-HHHHHHHHhc--------------------
Confidence 334443 69999995444 4 4577889999999999998422 1233333332
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHH
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 317 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 317 (475)
.+..+-+|||+-|+.-.+...++++..++.+....... ++ ..+.+.+....=
T Consensus 742 ----------------------~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p---V~---T~V~~~d~~~ir 793 (1139)
T COG1197 742 ----------------------NVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP---VK---TFVSEYDDLLIR 793 (1139)
T ss_pred ----------------------cCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc---eE---EEEecCChHHHH
Confidence 23567789999999999999999988777665443221 11 122222222222
Q ss_pred HHHHHhc-CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCC
Q 011884 318 VALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 396 (475)
Q Consensus 318 ~~~l~~~-~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip 396 (475)
..++++. ++|++-...|.++..+.+++.|++.- +...+.+.||.|+..+-++++.+|.+|+++|||||.+++.|||+|
T Consensus 794 eAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LV-PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIP 872 (1139)
T COG1197 794 EAILRELLRGGQVFYVHNRVESIEKKAERLRELV-PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIP 872 (1139)
T ss_pred HHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhC-CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCC
Confidence 2223333 68899999999999999999999874 457899999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCC-CCHHHHHHHhhhccccCCCCcEEEEeec
Q 011884 397 GVNNVVNYDKP-AYIKTYIHRAGRTARAGQLGRCFTLLHK 435 (475)
Q Consensus 397 ~~~~Vv~~~~~-~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 435 (475)
+++.+|+-+.. ....++-|..||+||.++.++|++++.+
T Consensus 873 nANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 873 NANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred CCceEEEeccccccHHHHHHhccccCCccceEEEEEeecC
Confidence 99999887765 3588999999999999999999999874
No 78
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=9.5e-30 Score=255.73 Aligned_cols=317 Identities=23% Similarity=0.249 Sum_probs=201.5
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
.|+++|.+|+..+...+.+++..++.+|||+|||.+++..+... +.++|||||++.|+.||++.+.+.
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-------~~~~Lvlv~~~~L~~Qw~~~~~~~----- 103 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-------KRSTLVLVPTKELLDQWAEALKKF----- 103 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-------cCCEEEEECcHHHHHHHHHHHHHh-----
Confidence 69999999999988877778889999999999999876655432 224999999999999975443332
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
... .-.++.+.|+.....
T Consensus 104 ----------------------------------~~~-~~~~g~~~~~~~~~~--------------------------- 121 (442)
T COG1061 104 ----------------------------------LLL-NDEIGIYGGGEKELE--------------------------- 121 (442)
T ss_pred ----------------------------------cCC-ccccceecCceeccC---------------------------
Confidence 111 112333333321000
Q ss_pred cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhh
Q 011884 165 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 244 (475)
Q Consensus 165 ~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (475)
. ..|.|+|.+++.... ....+....+++||+|||||+....+....+.+.... +.-...++....+........
T Consensus 122 ~-~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~----~~LGLTATp~R~D~~~~~~l~ 195 (442)
T COG1061 122 P-AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAY----PRLGLTATPEREDGGRIGDLF 195 (442)
T ss_pred C-CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcHHHHHHHHhhhccc----ceeeeccCceeecCCchhHHH
Confidence 0 269999999997642 1122444579999999999998766655444443332 111111121111111111111
Q ss_pred hccccccCCCCCCccchheeeeceeeccCcccccc-ccccCceeeecCcc--cc---C-----------------Cchhh
Q 011884 245 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LDLHHPLFLTTGET--RY---K-----------------LPERL 301 (475)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~-~~~~~~~~~~~~~~--~~---~-----------------~~~~~ 301 (475)
...+ .+.+..++. ++.. ..+..+........ .. . .....
T Consensus 196 ~~~g--------------~~vy~~~~~----~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (442)
T COG1061 196 DLIG--------------PIVYEVSLK----ELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAEN 257 (442)
T ss_pred HhcC--------------CeEeecCHH----HHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHH
Confidence 1110 112222221 1111 11111111110000 00 0 00000
Q ss_pred hhhhhhccCCCcHHHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCe
Q 011884 302 ESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 380 (475)
Q Consensus 302 ~~~~~~~~~~~~~~~l~~~l~~~-~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 380 (475)
...........+...+...+..+ .+.+++||+.++.+++.++..+...+ . +..+.|..+..+|.++++.|+.|..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~---~-~~~it~~t~~~eR~~il~~fr~g~~ 333 (442)
T COG1061 258 EARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPG---I-VEAITGETPKEEREAILERFRTGGI 333 (442)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCC---c-eEEEECCCCHHHHHHHHHHHHcCCC
Confidence 00112222334455556666555 47799999999999999999998765 4 7889999999999999999999999
Q ss_pred EEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhcccc
Q 011884 381 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 423 (475)
Q Consensus 381 ~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~ 423 (475)
++|+++.++.+|+|+|+++++|+..++.|+..|.||+||+.|.
T Consensus 334 ~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 334 KVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 9999999999999999999999999999999999999999993
No 79
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.97 E-value=4.3e-29 Score=273.95 Aligned_cols=307 Identities=21% Similarity=0.292 Sum_probs=194.4
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 81 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 81 (475)
|+ +|++.|..++..++ .|++++++||||+|||. +.++++..+.. ++.+++|++||++|+.|+++.
T Consensus 76 g~-~p~~iQ~~~i~~il----~G~d~vi~ApTGsGKT~-f~l~~~~~l~~---~g~~vLIL~PTreLa~Qi~~~------ 140 (1171)
T TIGR01054 76 GS-EPWSIQKMWAKRVL----RGDSFAIIAPTGVGKTT-FGLAMSLFLAK---KGKRCYIILPTTLLVIQVAEK------ 140 (1171)
T ss_pred CC-CCcHHHHHHHHHHh----CCCeEEEECCCCCCHHH-HHHHHHHHHHh---cCCeEEEEeCHHHHHHHHHHH------
Confidence 44 79999998876554 49999999999999997 55555554433 356899999999999995554
Q ss_pred cccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccce---EeEccCCCchHHHHHHHhhccccccCccCCchh
Q 011884 82 KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLS---VGLAVGQSSIADEISELIKRPKLEAGICYDPED 158 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
+..+....++. +..++|+.+..++...+
T Consensus 141 ---------------------------------l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~---------------- 171 (1171)
T TIGR01054 141 ---------------------------------ISSLAEKAGVGTVNIGAYHSRLPTKEKKEFM---------------- 171 (1171)
T ss_pred ---------------------------------HHHHHHhcCCceeeeeeecCCCCHHHHHHHH----------------
Confidence 44444444443 34567887655443221
Q ss_pred HHHhhh-cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHH-----------HHHh-hHHHHHHhccccccc
Q 011884 159 VLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE-----------AYQA-WLPTVLQLTRSDNEN 225 (475)
Q Consensus 159 ~~~~~~-~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~-----------~~~~-~i~~i~~~~~~~~~~ 225 (475)
..+. .+++|+|+||+.+.+.+.... . +++++|+||||++++. +|.+ .++.++..++.....
T Consensus 172 --~~l~~~~~dIlV~Tp~rL~~~~~~l~---~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~ 245 (1171)
T TIGR01054 172 --ERIENGDFDILITTTMFLSKNYDELG---P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKL 245 (1171)
T ss_pred --HHHhcCCCCEEEECHHHHHHHHHHhc---C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhcccc
Confidence 1222 247999999999988776522 1 7999999999999863 2222 233333322110000
Q ss_pred cccccccccccccccchhhhccccccCCCCCCccch--heeeeceeeccC-ccccccccccCceeeecCccccCCchhhh
Q 011884 226 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL--VKMVLSATLTQD-PNKLAQLDLHHPLFLTTGETRYKLPERLE 302 (475)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~SaT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (475)
. .. ..+.. ....+...+ ... ..+++|||..+. ... ...++...+....... ....+.
T Consensus 246 ~----------~~---~~~~~--~~~~~~~~~-~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~~~-~~r~I~ 305 (1171)
T TIGR01054 246 Y----------RA---LHAKK--RLELLEAIP-GKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGGSD-TLRNVV 305 (1171)
T ss_pred c----------hH---HHHHH--HHHHHHhhh-hccCcEEEEEeCCCCccccHH---HHcccccceEecCccc-cccceE
Confidence 0 00 00000 000000000 111 246689995432 221 1122333233322221 122233
Q ss_pred hhhhhccCCCcHHHHHHHHHhcCCCeEEEEcCCh---HHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCC
Q 011884 303 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV---ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 379 (475)
Q Consensus 303 ~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~s~---~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 379 (475)
+.+.... .+...+.++++.. +.++||||+++ +.|+.+++.|.+.+ +++..+||+++. +.+++|++|+
T Consensus 306 ~~~~~~~--~~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g---~~a~~lhg~~~~----~~l~~Fr~G~ 375 (1171)
T TIGR01054 306 DVYVEDE--DLKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHG---VKAVAYHATKPK----EDYEKFAEGE 375 (1171)
T ss_pred EEEEecc--cHHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCC---ceEEEEeCCCCH----HHHHHHHcCC
Confidence 3322222 1244566666654 46899999999 99999999999766 899999999963 7899999999
Q ss_pred eEEEEEc----CCcccCCCCCC-CcEEEEecCCC
Q 011884 380 IQVLVSS----DAMTRGMDVEG-VNNVVNYDKPA 408 (475)
Q Consensus 380 ~~iLv~t----~~~~~GiDip~-~~~Vv~~~~~~ 408 (475)
.++||+| +++++|+|+|+ ++.||+++.|+
T Consensus 376 ~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 376 IDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred CCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 9999995 89999999999 89999999884
No 80
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2.1e-29 Score=260.99 Aligned_cols=363 Identities=20% Similarity=0.241 Sum_probs=252.2
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhc-------cccceEEEcccHHHHHHHh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-------RCLRALVVLPTRDLALQVN 73 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~-------~~~~vlil~Pt~~L~~q~~ 73 (475)
+|..++++.|.+....++. ...++++|||||+|||.++++.+++.+..+.. ...++++++|.++|+..|
T Consensus 305 ~g~~sLNrIQS~v~daAl~---~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~- 380 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALR---GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEM- 380 (1674)
T ss_pred ccchhhhHHHHHHHHHHhc---CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHH-
Confidence 3556788899886554433 44889999999999999999999999876543 234799999999999994
Q ss_pred hhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCcc
Q 011884 74 SARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 153 (475)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 153 (475)
.+.+.+...+.++++.-.+|+........
T Consensus 381 --------------------------------------VgsfSkRla~~GI~V~ElTgD~~l~~~qi------------- 409 (1674)
T KOG0951|consen 381 --------------------------------------VGSFSKRLAPLGITVLELTGDSQLGKEQI------------- 409 (1674)
T ss_pred --------------------------------------HHHHHhhccccCcEEEEecccccchhhhh-------------
Confidence 44455666677999999999865433211
Q ss_pred CCchhHHHhhhcCCcEEEeCchHHHHHhhcCCCcc-cCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccc
Q 011884 154 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 232 (475)
Q Consensus 154 ~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~-~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~ 232 (475)
.++.|++|||+..=...++..... .+-++++|+||+|.+ ..++++.++++..++......
T Consensus 410 -----------eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL-hDdRGpvLESIVaRt~r~ses------- 470 (1674)
T KOG0951|consen 410 -----------EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL-HDDRGPVLESIVARTFRRSES------- 470 (1674)
T ss_pred -----------hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc-ccccchHHHHHHHHHHHHhhh-------
Confidence 246899999999533333322222 345899999999965 667788888888765432111
Q ss_pred ccccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCC
Q 011884 233 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL 312 (475)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (475)
.-...+.+.+|||+++-.+-..-+.+..+..+..+.. ..|.++.+.++-.....
T Consensus 471 ------------------------~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~s--yRpvPL~qq~Igi~ek~ 524 (1674)
T KOG0951|consen 471 ------------------------TEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSS--YRPVPLKQQYIGITEKK 524 (1674)
T ss_pred ------------------------cccCceeeeecccCCchhhhHHHhccCcccccccCcc--cCcCCccceEeccccCC
Confidence 1123468999999975433322222222333333222 23445555554444333
Q ss_pred cH-------HHHH-HHHHhcCCCeEEEEcCChHHHHHHHHHHhhc----------------------------------C
Q 011884 313 KP-------LYLV-ALLQSLGEEKCIVFTSSVESTHRLCTLLNHF----------------------------------G 350 (475)
Q Consensus 313 ~~-------~~l~-~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~----------------------------------~ 350 (475)
.. +..+ .+++....+++|||+.|+.++-+.|+.++.. .
T Consensus 525 ~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkd 604 (1674)
T KOG0951|consen 525 PLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKD 604 (1674)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHH
Confidence 21 1223 3334446689999999999988888877630 0
Q ss_pred CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEE----ecC------CCCHHHHHHHhhhc
Q 011884 351 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YDK------PAYIKTYIHRAGRT 420 (475)
Q Consensus 351 ~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~----~~~------~~s~~~~~Q~~GR~ 420 (475)
...++++++|+||+..+|..+.+.|++|+++++++|-.+++|+|+|.-+++|- +++ +.++.+..||.||+
T Consensus 605 LLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgra 684 (1674)
T KOG0951|consen 605 LLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRA 684 (1674)
T ss_pred HhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhc
Confidence 02467999999999999999999999999999999999999999997666552 332 35799999999999
Q ss_pred cccCCC--CcEEEEeechhHHHHHHHHHHhcCCCCCccCCChhhhhhhhccc
Q 011884 421 ARAGQL--GRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 470 (475)
Q Consensus 421 ~R~~~~--g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (475)
||.+.+ |.++++.+..++....++.+ .+.++++..+.+|.+-.
T Consensus 685 grp~~D~~gegiiit~~se~qyyls~mn-------~qLpiesq~~~rl~d~l 729 (1674)
T KOG0951|consen 685 GRPQYDTCGEGIIITDHSELQYYLSLMN-------QQLPIESQFVSRLADCL 729 (1674)
T ss_pred CCCccCcCCceeeccCchHhhhhHHhhh-------hcCCChHHHHHHhhhhh
Confidence 997754 67777778788766666544 44677777777665433
No 81
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=2.6e-29 Score=234.64 Aligned_cols=333 Identities=19% Similarity=0.239 Sum_probs=226.0
Q ss_pred CCCCcc-cchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcc
Q 011884 1 MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 1 ~~~~~~-~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 79 (475)
|||.++ ++.|++|++-+++ ..+|+.+++|||+||+++|.+|++-. +.-.||+.|-.+|..+..+.+.++
T Consensus 15 FGh~kFKs~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPaL~~-------~gITIV~SPLiALIkDQiDHL~~L 84 (641)
T KOG0352|consen 15 FGHKKFKSRLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPALVH-------GGITIVISPLIALIKDQIDHLKRL 84 (641)
T ss_pred hCchhhcChHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchHHHh-------CCeEEEehHHHHHHHHHHHHHHhc
Confidence 567653 6899999877766 56899999999999999999998752 237899999999999865555444
Q ss_pred cccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhH
Q 011884 80 CCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 159 (475)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
.+.+..+.+.-+..+... +
T Consensus 85 -------------------------------------------KVp~~SLNSKlSt~ER~r------------------i 103 (641)
T KOG0352|consen 85 -------------------------------------------KVPCESLNSKLSTVERSR------------------I 103 (641)
T ss_pred -------------------------------------------CCchhHhcchhhHHHHHH------------------H
Confidence 222222333322222211 1
Q ss_pred HHhhh---cCCcEEEeCchHHHH-----HhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccc
Q 011884 160 LQELQ---SAVDILVATPGRLMD-----HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 231 (475)
Q Consensus 160 ~~~~~---~~~~Iii~Tp~~l~~-----~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~ 231 (475)
.-.+. ....+++-||++... ++.. ..+-..++++||||||...-++..
T Consensus 104 ~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVDEAHCVSQWGHD---------------------- 159 (641)
T KOG0352|consen 104 MGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVDEAHCVSQWGHD---------------------- 159 (641)
T ss_pred HHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEechhhhHhhhccc----------------------
Confidence 11111 234789999986422 2221 122345789999999998533210
Q ss_pred cccccccccchhhhccccccCCCCCCccchheeeeceeeccCccc--cccccccCceee-ecCccccCCchhhhhhhhhc
Q 011884 232 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK--LAQLDLHHPLFL-TTGETRYKLPERLESYKLIC 308 (475)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 308 (475)
|.|++..-. -...-++..+-+.++||.++.+.+ ...+.++.|+.+ .+...+..+.-.+......
T Consensus 160 -FRPDYL~LG-----------~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I- 226 (641)
T KOG0352|consen 160 -FRPDYLTLG-----------SLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFI- 226 (641)
T ss_pred -cCcchhhhh-----------hHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHh-
Confidence 111111000 000111234568999999887766 456677777533 2222111111111111000
Q ss_pred cCCCcHHHHHHHHHhc-------------CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHH
Q 011884 309 ESKLKPLYLVALLQSL-------------GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 375 (475)
Q Consensus 309 ~~~~~~~~l~~~l~~~-------------~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f 375 (475)
...+..|.++-... -.|-.||||.|++.|++++=.|...+ ++...||.|+...||.++-+++
T Consensus 227 --~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~G---i~A~AYHAGLK~~ERTeVQe~W 301 (641)
T KOG0352|consen 227 --TDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAG---IPAMAYHAGLKKKERTEVQEKW 301 (641)
T ss_pred --hhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcC---cchHHHhcccccchhHHHHHHH
Confidence 11122222222111 13467999999999999999998766 9999999999999999999999
Q ss_pred HcCCeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHH
Q 011884 376 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 446 (475)
Q Consensus 376 ~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~ 446 (475)
-+++..||++|..+++|||-|++++|++++.+.|..-|-|-.||+||.|...+|.+++.++|...+.=|++
T Consensus 302 M~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 302 MNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred hcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999887765543
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.96 E-value=2e-28 Score=257.78 Aligned_cols=325 Identities=20% Similarity=0.203 Sum_probs=208.0
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
.|++.|.+|++.+...+ .++++++.|+||||||.+|+.++...+.. +.++||++|+++|+.|+++.+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~----g~~vLvLvPt~~L~~Q~~~~l~~------ 212 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ----GKQALVLVPEIALTPQMLARFRA------ 212 (679)
T ss_pred CCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHH------
Confidence 58999999998887654 45789999999999999998877666543 44799999999999996554322
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
. ++..+..++|+.+..+....+.. ...
T Consensus 213 ---------------------------------~---fg~~v~~~~s~~s~~~r~~~~~~-----------------~~~ 239 (679)
T PRK05580 213 ---------------------------------R---FGAPVAVLHSGLSDGERLDEWRK-----------------AKR 239 (679)
T ss_pred ---------------------------------H---hCCCEEEEECCCCHHHHHHHHHH-----------------HHc
Confidence 1 24678888988776555433211 112
Q ss_pred cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHH---hhHHHHHHhccccccccccccccccccccccc
Q 011884 165 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ---AWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 241 (475)
Q Consensus 165 ~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~---~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (475)
..++|+|+|+..++ .++.++++||+||+|...-.+.. -+...+......
T Consensus 240 g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~-------------------- 291 (679)
T PRK05580 240 GEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAK-------------------- 291 (679)
T ss_pred CCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhh--------------------
Confidence 34799999997763 34678999999999975321110 011111110000
Q ss_pred hhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchh--hh--hhhhhccCCCcHHHH
Q 011884 242 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER--LE--SYKLICESKLKPLYL 317 (475)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~l 317 (475)
....+.+++|||++.........+................|.. +. ..........-...+
T Consensus 292 ----------------~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l 355 (679)
T PRK05580 292 ----------------LENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPL 355 (679)
T ss_pred ----------------ccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHH
Confidence 0234789999997654333332221111111111111111110 00 000000001112334
Q ss_pred HHHHHhc--CCCeEEEEcCChH----------------------------------------------------------
Q 011884 318 VALLQSL--GEEKCIVFTSSVE---------------------------------------------------------- 337 (475)
Q Consensus 318 ~~~l~~~--~~~~~lvf~~s~~---------------------------------------------------------- 337 (475)
.+.+++. .++++|+|+|++.
T Consensus 356 ~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~ 435 (679)
T PRK05580 356 LEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPV 435 (679)
T ss_pred HHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEe
Confidence 4444332 4668999987531
Q ss_pred --HHHHHHHHHhhcCCCceeeEEeccccC--HHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCCC-----
Q 011884 338 --STHRLCTLLNHFGELRIKIKEYSGLQR--QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA----- 408 (475)
Q Consensus 338 --~~~~l~~~l~~~~~~~~~~~~~~g~~~--~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~----- 408 (475)
.++++++.|++.. ++.++..+|+++. ..+++++++.|++|+.+|||+|++++.|+|+|++++|++++...
T Consensus 436 g~G~e~~~e~l~~~f-p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~p 514 (679)
T PRK05580 436 GPGTERLEEELAELF-PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSP 514 (679)
T ss_pred eccHHHHHHHHHHhC-CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCC
Confidence 4556667776653 2468889999985 46788999999999999999999999999999999998776542
Q ss_pred -------CHHHHHHHhhhccccCCCCcEEEEeechhH
Q 011884 409 -------YIKTYIHRAGRTARAGQLGRCFTLLHKDEV 438 (475)
Q Consensus 409 -------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 438 (475)
....|.|++||+||.+..|.+++.....+.
T Consensus 515 dfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~ 551 (679)
T PRK05580 515 DFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEH 551 (679)
T ss_pred ccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCC
Confidence 236799999999999888999988755443
No 83
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.96 E-value=6.2e-28 Score=257.53 Aligned_cols=121 Identities=21% Similarity=0.228 Sum_probs=109.7
Q ss_pred CcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcC--CeEEEEEcCCc
Q 011884 312 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLVSSDAM 389 (475)
Q Consensus 312 ~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g--~~~iLv~t~~~ 389 (475)
.|...|.++++...+.|+||||+++..+..+.+.|.+. .++.+..+||+|+..+|.+.++.|+++ ..+|||||.+.
T Consensus 479 ~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvg 556 (956)
T PRK04914 479 PRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER--EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIG 556 (956)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhh
Confidence 46777888888877889999999999999999999653 248899999999999999999999984 59999999999
Q ss_pred ccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEee
Q 011884 390 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 434 (475)
Q Consensus 390 ~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 434 (475)
++|+|++.+++||++++|+++..|.||+||++|.|+.+.+.+++.
T Consensus 557 seGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~ 601 (956)
T PRK04914 557 SEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVP 601 (956)
T ss_pred ccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 999999999999999999999999999999999999888766653
No 84
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=1.6e-27 Score=259.78 Aligned_cols=98 Identities=20% Similarity=0.322 Sum_probs=84.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcC------CCceeeEEeccccCHHHHHHHHHHHHcCCe-EEEEEcCCcccCCCCCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFG------ELRIKIKEYSGLQRQSVRSKTLKAFREGKI-QVLVSSDAMTRGMDVEG 397 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~------~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~-~iLv~t~~~~~GiDip~ 397 (475)
.++++||||.++++|+.+++.|.+.. ..+..+..++|+++ ++.+++++|++++. .|+|+++++.+|+|+|.
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCccc
Confidence 45799999999999999999887642 11224556888874 57889999999876 79999999999999999
Q ss_pred CcEEEEecCCCCHHHHHHHhhhccccC
Q 011884 398 VNNVVNYDKPAYIKTYIHRAGRTARAG 424 (475)
Q Consensus 398 ~~~Vv~~~~~~s~~~~~Q~~GR~~R~~ 424 (475)
+.+||++.+++|...|.|++||+.|.-
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 999999999999999999999999975
No 85
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=1.4e-27 Score=258.22 Aligned_cols=224 Identities=17% Similarity=0.261 Sum_probs=156.1
Q ss_pred CCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHH-HHHHHHHh-hHHHHHHhccccccccccccccccccccccchh
Q 011884 166 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 243 (475)
Q Consensus 166 ~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~-l~~~~~~~-~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (475)
+++|+|+||+.|++.+... ..++++++||+||||+ .++.++.- .+..++..
T Consensus 163 ~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~------------------------- 215 (1294)
T PRK11131 163 NTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR------------------------- 215 (1294)
T ss_pred CCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchHHHHHHHhhhc-------------------------
Confidence 5689999999999988753 3488999999999995 44444321 12222211
Q ss_pred hhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCC---CcHHHH---
Q 011884 244 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK---LKPLYL--- 317 (475)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l--- 317 (475)
.+..+.|++|||+.. ..+.......+. +........+ ...+...... .+...+
T Consensus 216 --------------rpdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~~pV----ei~y~p~~~~~~~~~~d~l~~l 274 (1294)
T PRK11131 216 --------------RPDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRTYPV----EVRYRPIVEEADDTERDQLQAI 274 (1294)
T ss_pred --------------CCCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCccccc----eEEEeecccccchhhHHHHHHH
Confidence 023478999999953 344444444443 2222221111 1111111110 112222
Q ss_pred HHHHH---hcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCC
Q 011884 318 VALLQ---SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 394 (475)
Q Consensus 318 ~~~l~---~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiD 394 (475)
...+. ....+.+|||+++..+++.+++.|.+.+.....+..+||+++..+|.++++. .|+.+|||||++.+.|||
T Consensus 275 l~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSIT 352 (1294)
T PRK11131 275 FDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLT 352 (1294)
T ss_pred HHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccc
Confidence 22222 2356789999999999999999999876444568899999999999999886 478899999999999999
Q ss_pred CCCCcEEEEecC------------------CCCHHHHHHHhhhccccCCCCcEEEEeechhHHH
Q 011884 395 VEGVNNVVNYDK------------------PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 440 (475)
Q Consensus 395 ip~~~~Vv~~~~------------------~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 440 (475)
+|++++||.++. +.|..++.||+||+||.+ +|.|+.+++..+...
T Consensus 353 IpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~-~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 353 VPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS-EGICIRLYSEDDFLS 415 (1294)
T ss_pred cCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC-CcEEEEeCCHHHHHh
Confidence 999999999863 246689999999999995 999999999877654
No 86
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.95 E-value=2.1e-27 Score=222.16 Aligned_cols=302 Identities=24% Similarity=0.350 Sum_probs=211.9
Q ss_pred cceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchH
Q 011884 57 LRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIA 136 (475)
Q Consensus 57 ~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 136 (475)
+..+|+-|+++|++|.+..+++| +.......++.-+..|+....
T Consensus 287 p~avivepsrelaEqt~N~i~~F------------------------------------k~h~~np~~r~lLmiggv~~r 330 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEF------------------------------------KMHTSNPEVRSLLMIGGVLKR 330 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHH------------------------------------HhhcCChhhhhhhhhhhHHhH
Confidence 46899999999999976644333 333333344444556655544
Q ss_pred HHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHH
Q 011884 137 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 216 (475)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~ 216 (475)
.+..+ +..+.+|+|+||.++.+...++. ..+...+++|+||++-++..++...|..+.
T Consensus 331 ~Q~~q---------------------l~~g~~ivvGtpgRl~~~is~g~-~~lt~crFlvlDead~lL~qgy~d~I~r~h 388 (725)
T KOG0349|consen 331 TQCKQ---------------------LKDGTHIVVGTPGRLLQPISKGL-VTLTHCRFLVLDEADLLLGQGYDDKIYRFH 388 (725)
T ss_pred HHHHH---------------------hhcCceeeecCchhhhhhhhccc-eeeeeeEEEEecchhhhhhcccHHHHHHHh
Confidence 44443 33467999999999998888744 778889999999999999888888887777
Q ss_pred HhccccccccccccccccccccccchhhhccccccCCCCCCccchheeeeceeeccC-ccccccccccCceeeecCcccc
Q 011884 217 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD-PNKLAQLDLHHPLFLTTGETRY 295 (475)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~-~~~~~~~~~~~~~~~~~~~~~~ 295 (475)
..++..... ..+++.++.|||+..- +..+....+.-|.-+.. ....
T Consensus 389 ~qip~~tsd--------------------------------g~rlq~~vCsatlh~feVkk~~ervmhfptwVdL-kgeD 435 (725)
T KOG0349|consen 389 GQIPHMTSD--------------------------------GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDL-KGED 435 (725)
T ss_pred ccchhhhcC--------------------------------CcccccceeeeEEeEEEeeehhhhhccCceeEec-cccc
Confidence 766653322 1245778889987531 11111111111110000 0001
Q ss_pred CCchhhhh------------------hh-------------hhccCC--------CcHHHHHHHHHhcCCCeEEEEcCCh
Q 011884 296 KLPERLES------------------YK-------------LICESK--------LKPLYLVALLQSLGEEKCIVFTSSV 336 (475)
Q Consensus 296 ~~~~~~~~------------------~~-------------~~~~~~--------~~~~~l~~~l~~~~~~~~lvf~~s~ 336 (475)
.+|+.+.+ +. ...+++ .|-+.-...++++.-.++||||.++
T Consensus 436 ~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk 515 (725)
T KOG0349|consen 436 LVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTK 515 (725)
T ss_pred ccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEecc
Confidence 11111111 00 000000 1112223344556677999999999
Q ss_pred HHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHH
Q 011884 337 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 416 (475)
Q Consensus 337 ~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~ 416 (475)
.+|+.+.+++.+.+...+.+.++||+....||.+-++.|+.+..++||||++..+|+||.++.++|..-+|.....|++|
T Consensus 516 ~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhr 595 (725)
T KOG0349|consen 516 QDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHR 595 (725)
T ss_pred ccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhh
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCCcEEEEeechhHHHHHHHHHHhc
Q 011884 417 AGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 449 (475)
Q Consensus 417 ~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~ 449 (475)
+||+||..+-|-++.++.....+.+..+.+...
T Consensus 596 igrvgraermglaislvat~~ekvwyh~c~srg 628 (725)
T KOG0349|consen 596 IGRVGRAERMGLAISLVATVPEKVWYHWCKSRG 628 (725)
T ss_pred hhccchhhhcceeEEEeeccchheeehhhhccC
Confidence 999999988899999987655555555544433
No 87
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.95 E-value=7.9e-27 Score=253.04 Aligned_cols=438 Identities=18% Similarity=0.166 Sum_probs=243.4
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhh----hh
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA----RC 77 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~----~~ 77 (475)
|| ++||.|.+.+..+.+.+..++++++.||||+|||++|++|++..+. . +.+++|.+||++|+.|+... +.
T Consensus 243 ~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~---~~~vvi~t~t~~Lq~Ql~~~~~~~l~ 317 (850)
T TIGR01407 243 GL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T---EKPVVISTNTKVLQSQLLEKDIPLLN 317 (850)
T ss_pred CC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C---CCeEEEEeCcHHHHHHHHHHHHHHHH
Confidence 66 5899999988888888888899999999999999999999987665 2 34799999999999999763 45
Q ss_pred cccccccccccchhhhHHHhhh-ccccccccchhhH-HHHH----hhcccc--c-ce-EeEccCCCchHHHHHHHhhccc
Q 011884 78 KYCCKNIFGLIADHSIAEMCVQ-FDSLLFISLPQVK-DVFA----AIAPAV--G-LS-VGLAVGQSSIADEISELIKRPK 147 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~----~~~~~~--~-~~-~~~~~g~~~~~~~~~~~~~~~~ 147 (475)
+.++.++-.++..+..++.|.+ |.+.+..+..+.. ..++ .|...+ | +. +....+......++....+...
T Consensus 318 ~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~i~~~~~l~~ 397 (850)
T TIGR01407 318 EILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQVRHDGNLSK 397 (850)
T ss_pred HHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHHhhcCCCCCC
Confidence 5555567777888899999995 8877654432211 1111 121111 0 00 0000111111122111101111
Q ss_pred cccCccCCchhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHH------------HhhHHHH
Q 011884 148 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY------------QAWLPTV 215 (475)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~------------~~~i~~i 215 (475)
.......++....+.....++|+|+++..|+..+.... .-+...+++||||||++.+... ...+..+
T Consensus 398 ~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~-~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~~~~~~l~~l 476 (850)
T TIGR01407 398 KDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP-ELFPSFRDLIIDEAHHLPDIAENQLQEELDYADIKYQIDLI 476 (850)
T ss_pred CCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc-ccCCCCCEEEEECcchHHHHHHHHhcceeCHHHHHHHHHHH
Confidence 11223467888888888999999999999887764433 2345678999999999864311 1111111
Q ss_pred H------------Hhccc---c----c---------------------------ccccccc--------------ccccc
Q 011884 216 L------------QLTRS---D----N---------------------------ENRFSDA--------------STFLP 235 (475)
Q Consensus 216 ~------------~~~~~---~----~---------------------------~~~~~~~--------------~~~~~ 235 (475)
. +.... . . ....... ..+..
T Consensus 477 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 556 (850)
T TIGR01407 477 GKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDDFKNIEQSLK 556 (850)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 00000 0 0 0000000 00000
Q ss_pred c-ccccchhhhcccccc--CCCCCC-----------cc-chheeeeceeeccC--cccc-ccccccCceeeecCccccCC
Q 011884 236 S-AFGSLKTIRRCGVER--GFKDKP-----------YP-RLVKMVLSATLTQD--PNKL-AQLDLHHPLFLTTGETRYKL 297 (475)
Q Consensus 236 ~-~~~~~~~~~~~~~~~--~~~~~~-----------~~-~~~~i~~SaT~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~ 297 (475)
. ...+... ....... .+...+ ++ ....|++|||+... ...+ ..+++.+.............
T Consensus 557 ~~~~~wi~~-~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~ 635 (850)
T TIGR01407 557 EGHTSWISI-ENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNY 635 (850)
T ss_pred cCCeEEEEe-cCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCH
Confidence 0 0000000 0000000 000111 11 23478899999853 2222 22333322111111000010
Q ss_pred chhhhhhhhh-cc-C--CCc---HHHHHHHH---HhcCCCeEEEEcCChHHHHHHHHHHhhcCC-CceeeEEeccccCHH
Q 011884 298 PERLESYKLI-CE-S--KLK---PLYLVALL---QSLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQS 366 (475)
Q Consensus 298 ~~~~~~~~~~-~~-~--~~~---~~~l~~~l---~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~g~~~~~ 366 (475)
.+........ .+ . ... ...+.+.+ ....++++|||++|++..+.++..|..... .+.. ++..+.. .
T Consensus 636 ~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~ 712 (850)
T TIGR01407 636 AENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-G 712 (850)
T ss_pred HHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-c
Confidence 1111100000 00 0 011 11222222 122567999999999999999999976321 1223 2333332 4
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCcccCCCCCCC--cEEEEecCCC------------------------------CHHHHH
Q 011884 367 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV--NNVVNYDKPA------------------------------YIKTYI 414 (475)
Q Consensus 367 ~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~--~~Vv~~~~~~------------------------------s~~~~~ 414 (475)
+|.++++.|++++..||++|+.++||||+|+. ..||+.++|. ....+.
T Consensus 713 ~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~ 792 (850)
T TIGR01407 713 SRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLR 792 (850)
T ss_pred cHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHH
Confidence 78899999999999999999999999999984 4677777651 234677
Q ss_pred HHhhhccccCCCCcEEEEeech-hHHHH-HHHHHHhc
Q 011884 415 HRAGRTARAGQLGRCFTLLHKD-EVKRF-KKLLQKAD 449 (475)
Q Consensus 415 Q~~GR~~R~~~~g~~~~~~~~~-~~~~~-~~l~~~~~ 449 (475)
|.+||+.|...+..+++++|++ ..+.+ +.+++.+-
T Consensus 793 Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 793 QALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred HhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 9999999988776677777764 22233 45555553
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.9e-27 Score=241.93 Aligned_cols=298 Identities=19% Similarity=0.176 Sum_probs=185.7
Q ss_pred EEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhcccccccc
Q 011884 28 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFIS 107 (475)
Q Consensus 28 li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (475)
|+.||||||||.+|+..+...+.. +.++||++|+++|+.|+++.+++.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~----g~~vLvlvP~i~L~~Q~~~~l~~~---------------------------- 48 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL----GKSVLVLVPEIALTPQMIQRFKYR---------------------------- 48 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHHH----------------------------
Confidence 478999999999987766555432 447999999999999976554321
Q ss_pred chhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHHHhhcCCCc
Q 011884 108 LPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 187 (475)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~ 187 (475)
++..+..++|+.+..+....+.. .....++|+|+|+..++ .
T Consensus 49 --------------f~~~v~vlhs~~~~~er~~~~~~-----------------~~~g~~~IVVGTrsalf--------~ 89 (505)
T TIGR00595 49 --------------FGSQVAVLHSGLSDSEKLQAWRK-----------------VKNGEILVVIGTRSALF--------L 89 (505)
T ss_pred --------------hCCcEEEEECCCCHHHHHHHHHH-----------------HHcCCCCEEECChHHHc--------C
Confidence 13567788887765554333221 11224689999988663 3
Q ss_pred ccCCccEEEEcchHHHHHHHHH---hhHHHHHHhccccccccccccccccccccccchhhhccccccCCCCCCccchhee
Q 011884 188 TLEHLCYLVVDETDRLLREAYQ---AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 264 (475)
Q Consensus 188 ~~~~~~~lVvDE~H~l~~~~~~---~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 264 (475)
++.++++|||||+|+..-++.. -....+...... ..+.+.+
T Consensus 90 p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~------------------------------------~~~~~vi 133 (505)
T TIGR00595 90 PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK------------------------------------KFNCPVV 133 (505)
T ss_pred cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH------------------------------------hcCCCEE
Confidence 4678999999999976422110 011111111000 0134678
Q ss_pred eeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccC---CCcHHHHHHHHHhc--CCCeEEEEcCChHH-
Q 011884 265 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES---KLKPLYLVALLQSL--GEEKCIVFTSSVES- 338 (475)
Q Consensus 265 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~l~~~--~~~~~lvf~~s~~~- 338 (475)
++|||++.+.......+................+.. . ....... ..-...+.+.+++. .++++|||+|++..
T Consensus 134 l~SATPsles~~~~~~g~~~~~~l~~r~~~~~~p~v-~-vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya 211 (505)
T TIGR00595 134 LGSATPSLESYHNAKQKAYRLLVLTRRVSGRKPPEV-K-LIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYS 211 (505)
T ss_pred EEeCCCCHHHHHHHhcCCeEEeechhhhcCCCCCeE-E-EEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCC
Confidence 999997643332222111110001000000011100 0 0000000 11122344444332 46799999887643
Q ss_pred -----------------------------------------------------------HHHHHHHHhhcCCCceeeEEe
Q 011884 339 -----------------------------------------------------------THRLCTLLNHFGELRIKIKEY 359 (475)
Q Consensus 339 -----------------------------------------------------------~~~l~~~l~~~~~~~~~~~~~ 359 (475)
.+++.+.|++.. ++.++..+
T Consensus 212 ~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f-p~~~v~~~ 290 (505)
T TIGR00595 212 KNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF-PGARIARI 290 (505)
T ss_pred CeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC-CCCcEEEE
Confidence 477777777753 24788999
Q ss_pred ccccCHHHH--HHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCCC------------CHHHHHHHhhhccccCC
Q 011884 360 SGLQRQSVR--SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------------YIKTYIHRAGRTARAGQ 425 (475)
Q Consensus 360 ~g~~~~~~r--~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~------------s~~~~~Q~~GR~~R~~~ 425 (475)
|+++....+ +++++.|++|+.+|||+|++++.|+|+|+++.|++++... ....+.|++||+||.++
T Consensus 291 d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~ 370 (505)
T TIGR00595 291 DSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAED 370 (505)
T ss_pred ecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCC
Confidence 999877655 8899999999999999999999999999999987766431 24678999999999988
Q ss_pred CCcEEEEeec
Q 011884 426 LGRCFTLLHK 435 (475)
Q Consensus 426 ~g~~~~~~~~ 435 (475)
.|.+++....
T Consensus 371 ~g~viiqt~~ 380 (505)
T TIGR00595 371 PGQVIIQTYN 380 (505)
T ss_pred CCEEEEEeCC
Confidence 8988876643
No 89
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.8e-26 Score=240.04 Aligned_cols=378 Identities=19% Similarity=0.225 Sum_probs=235.1
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
.|++.| ++..+.-++.-+..++||+|||+++.+|++..+.. +..|+|++||+.||.|
T Consensus 82 ~~ydvQ------liGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~----G~~V~VvTpn~yLA~q------------- 138 (896)
T PRK13104 82 RHFDVQ------LIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS----GRGVHIVTVNDYLAKR------------- 138 (896)
T ss_pred CcchHH------HhhhhhhccCccccccCCCCchHHHHHHHHHHHhc----CCCEEEEcCCHHHHHH-------------
Confidence 456666 34444445555899999999999999999876654 3369999999999999
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
..+.+..+..++++++.+++|+.+.......
T Consensus 139 --------------------------d~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~----------------------- 169 (896)
T PRK13104 139 --------------------------DSQWMKPIYEFLGLTVGVIYPDMSHKEKQEA----------------------- 169 (896)
T ss_pred --------------------------HHHHHHHHhcccCceEEEEeCCCCHHHHHHH-----------------------
Confidence 6777788888899999999998765554322
Q ss_pred cCCcEEEeCchHH-HHHhhcCCCccc-----CCccEEEEcchHHHH-HH---------------HHHhhHHHHHHhcccc
Q 011884 165 SAVDILVATPGRL-MDHINATRGFTL-----EHLCYLVVDETDRLL-RE---------------AYQAWLPTVLQLTRSD 222 (475)
Q Consensus 165 ~~~~Iii~Tp~~l-~~~l~~~~~~~~-----~~~~~lVvDE~H~l~-~~---------------~~~~~i~~i~~~~~~~ 222 (475)
..++|+++||..| +++++....+.+ ..+.++|+||||+++ +. ..+..+..+...+...
T Consensus 170 y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~ 249 (896)
T PRK13104 170 YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQ 249 (896)
T ss_pred hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhc
Confidence 2579999999999 888887533443 578999999999864 21 1222333333333221
Q ss_pred ------ccccc---------ccc-ccccc-------------cccc-----cc-------hhhhccccccCC--CC----
Q 011884 223 ------NENRF---------SDA-STFLP-------------SAFG-----SL-------KTIRRCGVERGF--KD---- 255 (475)
Q Consensus 223 ------~~~~~---------~~~-~~~~~-------------~~~~-----~~-------~~~~~~~~~~~~--~~---- 255 (475)
..... ++. ...+. ..+. .. +..........+ .+
T Consensus 250 ~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~ 329 (896)
T PRK13104 250 EEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVV 329 (896)
T ss_pred cccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEE
Confidence 00000 000 00000 0000 00 000000000000 00
Q ss_pred --------------------------------------------CCc-cchheeeeceeeccCccccccccccCceeeec
Q 011884 256 --------------------------------------------KPY-PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 290 (475)
Q Consensus 256 --------------------------------------------~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 290 (475)
.+| ...+...+|+|......++... ++..++.+
T Consensus 330 iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~i--Y~l~Vv~I 407 (896)
T PRK13104 330 IVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQI--YNLEVVVI 407 (896)
T ss_pred EEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHH--hCCCEEEC
Confidence 000 0011444555543322222211 11222222
Q ss_pred CccccCCchhhhhhhhhccCCCcHHHHHHHHH--hcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHH
Q 011884 291 GETRYKLPERLESYKLICESKLKPLYLVALLQ--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 368 (475)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r 368 (475)
....+........ ....+...|+..+.+.+. ...+.++||||+|++.++.+++.|.+.+ ++...+|+.++..++
T Consensus 408 Ptnkp~~R~d~~d-~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~g---i~h~vLnak~~q~Ea 483 (896)
T PRK13104 408 PTNRSMIRKDEAD-LVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKEN---IKHQVLNAKFHEKEA 483 (896)
T ss_pred CCCCCcceecCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcC---CCeEeecCCCChHHH
Confidence 2222222111111 122233345555555553 3378899999999999999999999877 899999999999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCcccCCCCCC--------------------------------------CcEEEEecCCCCH
Q 011884 369 SKTLKAFREGKIQVLVSSDAMTRGMDVEG--------------------------------------VNNVVNYDKPAYI 410 (475)
Q Consensus 369 ~~~~~~f~~g~~~iLv~t~~~~~GiDip~--------------------------------------~~~Vv~~~~~~s~ 410 (475)
+.+.+.|+.| .|+|||+|.++|+||.= --+||....+.|.
T Consensus 484 ~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesr 561 (896)
T PRK13104 484 QIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESR 561 (896)
T ss_pred HHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchH
Confidence 9999999998 49999999999999971 1257778888888
Q ss_pred HHHHHHhhhccccCCCCcEEEEeec-hhH------HHHHHHHHHhcCCCCCccCCChhhhh
Q 011884 411 KTYIHRAGRTARAGQLGRCFTLLHK-DEV------KRFKKLLQKADNDSCPIHSIPSSLIE 464 (475)
Q Consensus 411 ~~~~Q~~GR~~R~~~~g~~~~~~~~-~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~ 464 (475)
---.|..||+||.|.+|.+.+|++- +++ +.+.++++.+... +..++.+.++.
T Consensus 562 RID~QLrGRaGRQGDPGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~--~~~~i~~~~~~ 620 (896)
T PRK13104 562 RIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASERVASMMRRLGMQ--PGEPIEHSLVT 620 (896)
T ss_pred HHHHHhccccccCCCCCceEEEEEcCcHHHHHhChHHHHHHHHHcCCC--CCCcCcchHHH
Confidence 8899999999999999999888754 333 3455666665422 12345555443
No 90
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=5.9e-27 Score=213.72 Aligned_cols=307 Identities=20% Similarity=0.197 Sum_probs=206.2
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
+++++|..|-+.++..+.+..+.|+.|.||+|||.-. ...++...+. |.+|.+.+|+...+..++.++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~~---G~~vciASPRvDVclEl~~Rl-------- 164 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALNQ---GGRVCIASPRVDVCLELYPRL-------- 164 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHhc---CCeEEEecCcccchHHHHHHH--------
Confidence 6899999999999999989999999999999999743 4444444443 457999999999988854443
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
+.. +.+..+.+++|++....+
T Consensus 165 -------------------------------k~a--F~~~~I~~Lyg~S~~~fr-------------------------- 185 (441)
T COG4098 165 -------------------------------KQA--FSNCDIDLLYGDSDSYFR-------------------------- 185 (441)
T ss_pred -------------------------------HHh--hccCCeeeEecCCchhcc--------------------------
Confidence 322 236788999998764443
Q ss_pred cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhh
Q 011884 165 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 244 (475)
Q Consensus 165 ~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (475)
+.++|+|..+++++-. .++++|+||+|.+.-. -...+....+..+..
T Consensus 186 --~plvVaTtHQLlrFk~--------aFD~liIDEVDAFP~~-~d~~L~~Av~~ark~---------------------- 232 (441)
T COG4098 186 --APLVVATTHQLLRFKQ--------AFDLLIIDEVDAFPFS-DDQSLQYAVKKARKK---------------------- 232 (441)
T ss_pred --ccEEEEehHHHHHHHh--------hccEEEEecccccccc-CCHHHHHHHHHhhcc----------------------
Confidence 3688888888876544 3779999999976311 111122222221111
Q ss_pred hccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhh----hhhccCCCcHHHHHHH
Q 011884 245 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY----KLICESKLKPLYLVAL 320 (475)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~ 320 (475)
.-..|++|||++.....-...+-.....+....-...+|.+-... ........-...|..+
T Consensus 233 ---------------~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~ 297 (441)
T COG4098 233 ---------------EGATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRW 297 (441)
T ss_pred ---------------cCceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHH
Confidence 113689999987544332222222222111111111121111110 0111111223467777
Q ss_pred HHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCC
Q 011884 321 LQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 398 (475)
Q Consensus 321 l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~ 398 (475)
++.+ .+.+++||+++.+..++++..|++.- ....+..+|+.. ..|.+.++.|++|+..+|++|.++++|+-+|++
T Consensus 298 lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~-~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~v 374 (441)
T COG4098 298 LEKQRKTGRPVLIFFPEIETMEQVAAALKKKL-PKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNV 374 (441)
T ss_pred HHHHHhcCCcEEEEecchHHHHHHHHHHHhhC-CccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccc
Confidence 7655 45799999999999999999996643 236678888864 568899999999999999999999999999999
Q ss_pred cEEEEecCC--CCHHHHHHHhhhccccCC-C-CcEEEEe
Q 011884 399 NNVVNYDKP--AYIKTYIHRAGRTARAGQ-L-GRCFTLL 433 (475)
Q Consensus 399 ~~Vv~~~~~--~s~~~~~Q~~GR~~R~~~-~-g~~~~~~ 433 (475)
++.|+-.-. .+...++|.+||+||.-. + |.+.+|-
T Consensus 375 dV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 375 DVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred eEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 987765433 678899999999999653 3 4444443
No 91
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=7.6e-27 Score=253.46 Aligned_cols=309 Identities=17% Similarity=0.236 Sum_probs=198.7
Q ss_pred hhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhH
Q 011884 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIA 94 (475)
Q Consensus 15 ~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~ 94 (475)
..++..+.+++.++|+|+||||||+. +|.+..-...+ ...++++.-|.|.-|..+++.
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~~-~~~~I~~tQPRRlAA~svA~R------------------- 130 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGRG-SHGLIGHTQPRRLAARTVAQR------------------- 130 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCCC-CCceEecCCccHHHHHHHHHH-------------------
Confidence 34566666778899999999999984 44332211111 223566667988877664333
Q ss_pred HHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCc
Q 011884 95 EMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 174 (475)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp 174 (475)
....++...|-.++.-+... .. ...++.|.++|+
T Consensus 131 -------------------vA~elg~~lG~~VGY~vR~~---~~------------------------~s~~T~I~~~Td 164 (1283)
T TIGR01967 131 -------------------IAEELGTPLGEKVGYKVRFH---DQ------------------------VSSNTLVKLMTD 164 (1283)
T ss_pred -------------------HHHHhCCCcceEEeeEEcCC---cc------------------------cCCCceeeeccc
Confidence 22233333333332211110 00 112468999999
Q ss_pred hHHHHHhhcCCCcccCCccEEEEcchHH-HHHHHHH-hhHHHHHHhccccccccccccccccccccccchhhhccccccC
Q 011884 175 GRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 252 (475)
Q Consensus 175 ~~l~~~l~~~~~~~~~~~~~lVvDE~H~-l~~~~~~-~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (475)
+.|.+.+... ..++.+++||+||+|+ .++.++. ..+..++...
T Consensus 165 GiLLr~l~~d--~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r--------------------------------- 209 (1283)
T TIGR01967 165 GILLAETQQD--RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR--------------------------------- 209 (1283)
T ss_pred cHHHHHhhhC--cccccCcEEEEcCcchhhccchhHHHHHHHHHhhC---------------------------------
Confidence 9999887652 3578999999999995 4444332 1233333211
Q ss_pred CCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccC----CCcHHHHHHHHH---hcC
Q 011884 253 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES----KLKPLYLVALLQ---SLG 325 (475)
Q Consensus 253 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~l~---~~~ 325 (475)
+..+.|++|||+.. ..+.......+.+ ........+ .+.+....... ......+...+. ...
T Consensus 210 ------pdLKlIlmSATld~--~~fa~~F~~apvI-~V~Gr~~PV--ev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~ 278 (1283)
T TIGR01967 210 ------PDLKIIITSATIDP--ERFSRHFNNAPII-EVSGRTYPV--EVRYRPLVEEQEDDDLDQLEAILDAVDELFAEG 278 (1283)
T ss_pred ------CCCeEEEEeCCcCH--HHHHHHhcCCCEE-EECCCcccc--eeEEecccccccchhhhHHHHHHHHHHHHHhhC
Confidence 13478999999953 4455444444433 222211111 11110000000 112222333332 224
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEec
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 405 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~ 405 (475)
.+.+|||+++..+++.+++.|.+....+..+..+||+++..+|.++++.+ +..+||++|++.+.|+|+|++++||.++
T Consensus 279 ~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsG 356 (1283)
T TIGR01967 279 PGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTG 356 (1283)
T ss_pred CCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCC
Confidence 68999999999999999999998754456788999999999999886654 3469999999999999999999999988
Q ss_pred CC------------------CCHHHHHHHhhhccccCCCCcEEEEeechhHHH
Q 011884 406 KP------------------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 440 (475)
Q Consensus 406 ~~------------------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 440 (475)
.+ .|..++.||+||+||.+ +|.|+.+++..+...
T Consensus 357 l~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 357 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred CccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 43 36789999999999998 999999999877654
No 92
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1e-25 Score=234.35 Aligned_cols=365 Identities=19% Similarity=0.184 Sum_probs=231.2
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
.|++.|.-. .+.-.+.-+.+++||+|||+++.+|++-.... +..|-+++||..||.|
T Consensus 81 ~~~dvQlig------~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL~----G~~V~IvTpn~yLA~r------------- 137 (830)
T PRK12904 81 RHFDVQLIG------GMVLHEGKIAEMKTGEGKTLVATLPAYLNALT----GKGVHVVTVNDYLAKR------------- 137 (830)
T ss_pred CCCccHHHh------hHHhcCCchhhhhcCCCcHHHHHHHHHHHHHc----CCCEEEEecCHHHHHH-------------
Confidence 577777443 22223334899999999999999998643332 2358899999999999
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
.++.+..+...+++++++++|+.+..+....
T Consensus 138 --------------------------d~e~~~~l~~~LGlsv~~i~~~~~~~er~~~----------------------- 168 (830)
T PRK12904 138 --------------------------DAEWMGPLYEFLGLSVGVILSGMSPEERREA----------------------- 168 (830)
T ss_pred --------------------------HHHHHHHHHhhcCCeEEEEcCCCCHHHHHHh-----------------------
Confidence 6777788888899999999998776655332
Q ss_pred cCCcEEEeCchHH-HHHhhcCCC-----cccCCccEEEEcchHHHH-HH---------------HHHhhHHHHHHhcccc
Q 011884 165 SAVDILVATPGRL-MDHINATRG-----FTLEHLCYLVVDETDRLL-RE---------------AYQAWLPTVLQLTRSD 222 (475)
Q Consensus 165 ~~~~Iii~Tp~~l-~~~l~~~~~-----~~~~~~~~lVvDE~H~l~-~~---------------~~~~~i~~i~~~~~~~ 222 (475)
..++|+++||..| +++++.... .....+.++||||||+++ +. ..+..+..+...+...
T Consensus 169 y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~ 248 (830)
T PRK12904 169 YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKE 248 (830)
T ss_pred cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCC
Confidence 2479999999999 888876432 235678999999999864 21 1233344444444221
Q ss_pred cccccccc--------------------ccc-----------cccccccchhhh-------cccccc-------------
Q 011884 223 NENRFSDA--------------------STF-----------LPSAFGSLKTIR-------RCGVER------------- 251 (475)
Q Consensus 223 ~~~~~~~~--------------------~~~-----------~~~~~~~~~~~~-------~~~~~~------------- 251 (475)
.......- ..+ ...+......+. ..+.-.
T Consensus 249 ~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr 328 (830)
T PRK12904 249 GDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGR 328 (830)
T ss_pred CCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCC
Confidence 11000000 000 000000000000 000000
Q ss_pred --------------CCCC-------------CCc-cchheeeeceeeccCccccccccccCceeeecCccccCCchhhhh
Q 011884 252 --------------GFKD-------------KPY-PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES 303 (475)
Q Consensus 252 --------------~~~~-------------~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (475)
++.- .++ ...+..++|+|......++... ++..++......+.......
T Consensus 329 ~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~i--Y~l~vv~IPtnkp~~r~d~~- 405 (830)
T PRK12904 329 RYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREI--YNLDVVVIPTNRPMIRIDHP- 405 (830)
T ss_pred ccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHH--hCCCEEEcCCCCCeeeeeCC-
Confidence 0000 000 0112555666654332222221 11122222222222211111
Q ss_pred hhhhccCCCcHHHHHHHHHh--cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeE
Q 011884 304 YKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 381 (475)
Q Consensus 304 ~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 381 (475)
.....+...|...+.+.+.+ ..+.++||||+|++.++.+++.|.+.+ ++...+|+. ..+|+..+.+|+.++..
T Consensus 406 d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~g---i~~~vLnak--q~eREa~Iia~Ag~~g~ 480 (830)
T PRK12904 406 DLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAG---IPHNVLNAK--NHEREAEIIAQAGRPGA 480 (830)
T ss_pred CeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC---CceEeccCc--hHHHHHHHHHhcCCCce
Confidence 12233444577777777755 578899999999999999999999876 889999995 67899999999999999
Q ss_pred EEEEcCCcccCCCCCCC--------------------------------------cEEEEecCCCCHHHHHHHhhhcccc
Q 011884 382 VLVSSDAMTRGMDVEGV--------------------------------------NNVVNYDKPAYIKTYIHRAGRTARA 423 (475)
Q Consensus 382 iLv~t~~~~~GiDip~~--------------------------------------~~Vv~~~~~~s~~~~~Q~~GR~~R~ 423 (475)
|+|||++.++|+||+=- -+||....+.|.---.|..||+||.
T Consensus 481 VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQ 560 (830)
T PRK12904 481 VTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQ 560 (830)
T ss_pred EEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccC
Confidence 99999999999999832 1577788889999999999999999
Q ss_pred CCCCcEEEEeech-hH------HHHHHHHHHhc
Q 011884 424 GQLGRCFTLLHKD-EV------KRFKKLLQKAD 449 (475)
Q Consensus 424 ~~~g~~~~~~~~~-~~------~~~~~l~~~~~ 449 (475)
|.+|.+.+|++-+ ++ +.+.+++..+.
T Consensus 561 GdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~ 593 (830)
T PRK12904 561 GDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLG 593 (830)
T ss_pred CCCCceeEEEEcCcHHHHhhchHHHHHHHHHcC
Confidence 9999999887643 33 24555655553
No 93
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.94 E-value=4e-25 Score=212.70 Aligned_cols=163 Identities=20% Similarity=0.222 Sum_probs=126.6
Q ss_pred hheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHHHHh--cCCCeEEEEcCChHH
Q 011884 261 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVES 338 (475)
Q Consensus 261 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~s~~~ 338 (475)
.|.|+.|||+.+-..+.....+.+..+-.++...+. ....+...+.+.|..-++. ..+.++||-+-|+..
T Consensus 387 ~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP~--------ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 387 PQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDPE--------IEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred CCEEEEECCCChHHHHhccCceeEEeecCCCCCCCc--------eeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 478999999865333333323333333222222222 2333444555555555543 267899999999999
Q ss_pred HHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCC-----CCHHHH
Q 011884 339 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-----AYIKTY 413 (475)
Q Consensus 339 ~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~-----~s~~~~ 413 (475)
|+.+.++|.+.+ +++.++|++...-+|.+++++++.|..++||+.+.+.+|+|+|.|.+|.+++.. +|..++
T Consensus 459 AEdLT~Yl~e~g---ikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SL 535 (663)
T COG0556 459 AEDLTEYLKELG---IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSL 535 (663)
T ss_pred HHHHHHHHHhcC---ceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchH
Confidence 999999999888 999999999999999999999999999999999999999999999999998854 688999
Q ss_pred HHHhhhccccCCCCcEEEEeec
Q 011884 414 IHRAGRTARAGQLGRCFTLLHK 435 (475)
Q Consensus 414 ~Q~~GR~~R~~~~g~~~~~~~~ 435 (475)
+|.+|||.|.- .|+++++.+.
T Consensus 536 IQtIGRAARN~-~GkvIlYAD~ 556 (663)
T COG0556 536 IQTIGRAARNV-NGKVILYADK 556 (663)
T ss_pred HHHHHHHhhcc-CCeEEEEchh
Confidence 99999999976 8999999765
No 94
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=5.1e-26 Score=239.28 Aligned_cols=332 Identities=19% Similarity=0.174 Sum_probs=224.0
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+|| +|.++|.+|+. .+..+.+++++||||+|||.++-.++...+.. +.+++|++|.++|.+|-++++..
T Consensus 116 ~~F-~LD~fQ~~a~~----~Ler~esVlV~ApTssGKTvVaeyAi~~al~~----~qrviYTsPIKALsNQKyrdl~~-- 184 (1041)
T COG4581 116 YPF-ELDPFQQEAIA----ILERGESVLVCAPTSSGKTVVAEYAIALALRD----GQRVIYTSPIKALSNQKYRDLLA-- 184 (1041)
T ss_pred CCC-CcCHHHHHHHH----HHhCCCcEEEEccCCCCcchHHHHHHHHHHHc----CCceEeccchhhhhhhHHHHHHH--
Confidence 467 88999998754 45579999999999999999998877766654 44799999999999997665322
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.+... .--+++.+|+..+
T Consensus 185 ------------------------------------~fgdv-~~~vGL~TGDv~I------------------------- 202 (1041)
T COG4581 185 ------------------------------------KFGDV-ADMVGLMTGDVSI------------------------- 202 (1041)
T ss_pred ------------------------------------Hhhhh-hhhccceecceee-------------------------
Confidence 12211 1234566666542
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
+.++.++|+|.+.|.+.+... ...+..+..|||||+|.+.+...+..++.++-.++.
T Consensus 203 ---N~~A~clvMTTEILRnMlyrg-~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~------------------- 259 (1041)
T COG4581 203 ---NPDAPCLVMTTEILRNMLYRG-SESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPD------------------- 259 (1041)
T ss_pred ---CCCCceEEeeHHHHHHHhccC-cccccccceEEEEeeeeccccccchhHHHHHHhcCC-------------------
Confidence 334679999999998887764 477889999999999999888888888888776655
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccc--cCceeeecCccccC----------------------
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL--HHPLFLTTGETRYK---------------------- 296 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~--~~~~~~~~~~~~~~---------------------- 296 (475)
.+++|++|||.++..+.-.+... ..+..+.....++.
T Consensus 260 -------------------~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~ 320 (1041)
T COG4581 260 -------------------HVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKF 320 (1041)
T ss_pred -------------------CCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccc
Confidence 34789999999765333222211 11111111110000
Q ss_pred Cchh----hhhhh------hh-c------------------cCCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHh
Q 011884 297 LPER----LESYK------LI-C------------------ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 347 (475)
Q Consensus 297 ~~~~----~~~~~------~~-~------------------~~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~ 347 (475)
.... ...+. .. . ....+...+...+.....-++++|+-|+..|+..+..+.
T Consensus 321 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~ 400 (1041)
T COG4581 321 NAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILS 400 (1041)
T ss_pred hhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhc
Confidence 0000 00000 00 0 001112334555555567799999999999999988776
Q ss_pred hcCC--------------------------------------CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCc
Q 011884 348 HFGE--------------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 389 (475)
Q Consensus 348 ~~~~--------------------------------------~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~ 389 (475)
.... +...++.+|+||=+..|..+.+.|..|-.+++++|.++
T Consensus 401 ~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~ 480 (1041)
T COG4581 401 TLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETF 480 (1041)
T ss_pred ccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhh
Confidence 3110 01246789999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEecC---------CCCHHHHHHHhhhccccCCC--CcEEEEe-e-chhHHHHHHHHHHh
Q 011884 390 TRGMDVEGVNNVVNYDK---------PAYIKTYIHRAGRTARAGQL--GRCFTLL-H-KDEVKRFKKLLQKA 448 (475)
Q Consensus 390 ~~GiDip~~~~Vv~~~~---------~~s~~~~~Q~~GR~~R~~~~--g~~~~~~-~-~~~~~~~~~l~~~~ 448 (475)
+.|+|+|. ..||+..+ +-++.+|.|+.||+||+|.+ |.++++- . ..+......+....
T Consensus 481 s~GiNmPa-rtvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~ 551 (1041)
T COG4581 481 AIGINMPA-RTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGK 551 (1041)
T ss_pred hhhcCCcc-cceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCC
Confidence 99999995 44555443 24689999999999999977 4444441 1 22244555554443
No 95
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.93 E-value=1.2e-25 Score=207.28 Aligned_cols=321 Identities=19% Similarity=0.284 Sum_probs=220.5
Q ss_pred CCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccc
Q 011884 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCK 82 (475)
Q Consensus 3 ~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 82 (475)
..++||.|.++++..+ .+.++++..|||.||+++|.+|++.. +.-+|+++|-.+|.++..-.++.
T Consensus 92 lekfrplq~~ain~~m----a~ed~~lil~tgggkslcyqlpal~a-------dg~alvi~plislmedqil~lkq---- 156 (695)
T KOG0353|consen 92 LEKFRPLQLAAINATM----AGEDAFLILPTGGGKSLCYQLPALCA-------DGFALVICPLISLMEDQILQLKQ---- 156 (695)
T ss_pred HHhcChhHHHHhhhhh----ccCceEEEEeCCCccchhhhhhHHhc-------CCceEeechhHHHHHHHHHHHHH----
Confidence 4678999999866544 48999999999999999999999862 34799999999999863322222
Q ss_pred ccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHh
Q 011884 83 NIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 162 (475)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (475)
+ ++....+...++..+. .. +...
T Consensus 157 -----------------------------------l----gi~as~lnansske~~-k~-----------------v~~~ 179 (695)
T KOG0353|consen 157 -----------------------------------L----GIDASMLNANSSKEEA-KR-----------------VEAA 179 (695)
T ss_pred -----------------------------------h----CcchhhccCcccHHHH-HH-----------------HHHH
Confidence 1 3333333222221111 00 0111
Q ss_pred hh---cCCcEEEeCchHHHH------HhhcCCCcccCCccEEEEcchHHHHHHH--HHhhHH--HHHHhccccccccccc
Q 011884 163 LQ---SAVDILVATPGRLMD------HINATRGFTLEHLCYLVVDETDRLLREA--YQAWLP--TVLQLTRSDNENRFSD 229 (475)
Q Consensus 163 ~~---~~~~Iii~Tp~~l~~------~l~~~~~~~~~~~~~lVvDE~H~l~~~~--~~~~i~--~i~~~~~~~~~~~~~~ 229 (475)
+. ....+++.||+.+.. .+.. ......+.+|-+||+|+...++ |+.... .++.
T Consensus 180 i~nkdse~kliyvtpekiaksk~~mnklek--a~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilk------------ 245 (695)
T KOG0353|consen 180 ITNKDSEFKLIYVTPEKIAKSKKFMNKLEK--ALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILK------------ 245 (695)
T ss_pred HcCCCceeEEEEecHHHHHHHHHHHHHHHH--HhhcceeEEEeecceeehhhhCcccCcchHHHHHHH------------
Confidence 11 235799999998733 2222 2345568899999999885432 111111 1111
Q ss_pred cccccccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccc--cccCceeeecCccccCCchhhhhhhhh
Q 011884 230 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL--DLHHPLFLTTGETRYKLPERLESYKLI 307 (475)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (475)
.-+++.+++.++||...++..-.+. .+...+.+..+.+++.+.-. ..
T Consensus 246 --------------------------rqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~ye-----v~ 294 (695)
T KOG0353|consen 246 --------------------------RQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYE-----VR 294 (695)
T ss_pred --------------------------HhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeE-----ee
Confidence 1123456789999988775553332 22233444444444333211 12
Q ss_pred ccCCCcHHH---HHHHHH-hcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEE
Q 011884 308 CESKLKPLY---LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 383 (475)
Q Consensus 308 ~~~~~~~~~---l~~~l~-~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iL 383 (475)
..+....+. +..++. ...++..||||-|+.+|+.++..|+..+ +....+|..|.+.+|.-.-+.+..|+++++
T Consensus 295 qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~g---i~a~~yha~lep~dks~~hq~w~a~eiqvi 371 (695)
T KOG0353|consen 295 QKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHG---IHAGAYHANLEPEDKSGAHQGWIAGEIQVI 371 (695)
T ss_pred eCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcC---ccccccccccCccccccccccccccceEEE
Confidence 223333333 333333 3367788999999999999999999877 999999999999999999999999999999
Q ss_pred EEcCCcccCCCCCCCcEEEEecCCCCHHHHHH-------------------------------------------Hhhhc
Q 011884 384 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH-------------------------------------------RAGRT 420 (475)
Q Consensus 384 v~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q-------------------------------------------~~GR~ 420 (475)
|+|-.++.|||-|++++||+..+|+|+..|-| -.||+
T Consensus 372 vatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgra 451 (695)
T KOG0353|consen 372 VATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRA 451 (695)
T ss_pred EEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhcccc
Confidence 99999999999999999999999999999999 56999
Q ss_pred cccCCCCcEEEEeechhHHHHHH
Q 011884 421 ARAGQLGRCFTLLHKDEVKRFKK 443 (475)
Q Consensus 421 ~R~~~~g~~~~~~~~~~~~~~~~ 443 (475)
||.+.+..|++++--.|.=++..
T Consensus 452 grd~~~a~cilyy~~~difk~ss 474 (695)
T KOG0353|consen 452 GRDDMKADCILYYGFADIFKISS 474 (695)
T ss_pred ccCCCcccEEEEechHHHHhHHH
Confidence 99999999999976555544433
No 96
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=1.9e-25 Score=226.76 Aligned_cols=327 Identities=17% Similarity=0.149 Sum_probs=218.0
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
++| .|.+.|.+|+. .+..|..+.+.|+|.+|||.++-.++.-. +..+.|.+|.+|-++|.+|
T Consensus 294 ~pF-elD~FQk~Ai~----~lerg~SVFVAAHTSAGKTvVAEYAiala----q~h~TR~iYTSPIKALSNQ--------- 355 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIY----HLERGDSVFVAAHTSAGKTVVAEYAIALA----QKHMTRTIYTSPIKALSNQ--------- 355 (1248)
T ss_pred CCC-CccHHHHHHHH----HHHcCCeEEEEecCCCCcchHHHHHHHHH----HhhccceEecchhhhhccc---------
Confidence 456 78999999865 44569999999999999999887765332 1356689999999999999
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
-.+.|+.-..+.+ +++|+.....
T Consensus 356 ------------------------------KfRDFk~tF~Dvg----LlTGDvqinP----------------------- 378 (1248)
T KOG0947|consen 356 ------------------------------KFRDFKETFGDVG----LLTGDVQINP----------------------- 378 (1248)
T ss_pred ------------------------------hHHHHHHhccccc----eeecceeeCC-----------------------
Confidence 4444544444444 7788765333
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
.+..+|+|.+.|.+.+-++. --+.++..|||||+|.+.+..++-.++.++-.++..
T Consensus 379 -----eAsCLIMTTEILRsMLYrga-dliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~H------------------ 434 (1248)
T KOG0947|consen 379 -----EASCLIMTTEILRSMLYRGA-DLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRH------------------ 434 (1248)
T ss_pred -----CcceEeehHHHHHHHHhccc-chhhccceEEEeeeeecccccccccceeeeeecccc------------------
Confidence 45799999999988887655 346789999999999998888887777777655442
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCcccc--ccccccCcee-eec-------------C--------ccccC
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL--AQLDLHHPLF-LTT-------------G--------ETRYK 296 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~--~~~~~~~~~~-~~~-------------~--------~~~~~ 296 (475)
+++|++|||.++..+.. .......... +.+ . .....
T Consensus 435 --------------------V~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~f 494 (1248)
T KOG0947|consen 435 --------------------VNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIF 494 (1248)
T ss_pred --------------------ceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchh
Confidence 24566666665432221 1111100000 000 0 00000
Q ss_pred Cch------------------------------------hhhhhhhh--ccCC-----CcHHHHHHHHHhcCCCeEEEEc
Q 011884 297 LPE------------------------------------RLESYKLI--CESK-----LKPLYLVALLQSLGEEKCIVFT 333 (475)
Q Consensus 297 ~~~------------------------------------~~~~~~~~--~~~~-----~~~~~l~~~l~~~~~~~~lvf~ 333 (475)
+.. ........ .... ..+..+...+....--+++|||
T Consensus 495 l~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFv 574 (1248)
T KOG0947|consen 495 LLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFV 574 (1248)
T ss_pred hhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEE
Confidence 000 00000000 0000 1245566666655566999999
Q ss_pred CChHHHHHHHHHHhhcCCC------------------------------------ceeeEEeccccCHHHHHHHHHHHHc
Q 011884 334 SSVESTHRLCTLLNHFGEL------------------------------------RIKIKEYSGLQRQSVRSKTLKAFRE 377 (475)
Q Consensus 334 ~s~~~~~~l~~~l~~~~~~------------------------------------~~~~~~~~g~~~~~~r~~~~~~f~~ 377 (475)
-|+..|+..+++|....-. ..+++.+|||.-+--++-+..-|..
T Consensus 575 FSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqr 654 (1248)
T KOG0947|consen 575 FSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQR 654 (1248)
T ss_pred EccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhc
Confidence 9999999999999763211 2368999999988888889999999
Q ss_pred CCeEEEEEcCCcccCCCCCCCcEEEEecCC---------CCHHHHHHHhhhccccCCCCcEEEEe-ec---hhHHHHHHH
Q 011884 378 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKP---------AYIKTYIHRAGRTARAGQLGRCFTLL-HK---DEVKRFKKL 444 (475)
Q Consensus 378 g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~---------~s~~~~~Q~~GR~~R~~~~g~~~~~~-~~---~~~~~~~~l 444 (475)
|-.+||+||.++.+|||+|. +.||+-.+. ..+.+|.|++|||||+|-+..+.+++ .+ .+...++++
T Consensus 655 GlVKVLFATETFAMGVNMPA-RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~l 733 (1248)
T KOG0947|consen 655 GLVKVLFATETFAMGVNMPA-RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRL 733 (1248)
T ss_pred CceEEEeehhhhhhhcCCCc-eeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhH
Confidence 99999999999999999994 666665543 35889999999999999764443333 22 344555555
Q ss_pred HHH
Q 011884 445 LQK 447 (475)
Q Consensus 445 ~~~ 447 (475)
+--
T Consensus 734 i~G 736 (1248)
T KOG0947|consen 734 IMG 736 (1248)
T ss_pred hcC
Confidence 433
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=3.8e-25 Score=229.16 Aligned_cols=135 Identities=22% Similarity=0.299 Sum_probs=110.1
Q ss_pred CCCcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC
Q 011884 310 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 387 (475)
Q Consensus 310 ~~~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~ 387 (475)
...|...+.+.+... .+.++||||+|+..++.+++.|.+.+ ++...+|+.+...++..+...++.| .|+|||+
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g---i~~~~Lna~~~~~Ea~ii~~ag~~g--~VtIATn 496 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG---IPHAVLNAKNHAKEAEIIMNAGQRG--AVTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC---CCeeEecCCcHHHHHHHHHhcCCCc--eEEEEec
Confidence 345666777777433 78899999999999999999999877 8889999998866666666655555 5999999
Q ss_pred CcccCCCCC---CCc-----EEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeech-hHH------HHHHHHHHhc
Q 011884 388 AMTRGMDVE---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVK------RFKKLLQKAD 449 (475)
Q Consensus 388 ~~~~GiDip---~~~-----~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~------~~~~l~~~~~ 449 (475)
|.++|.||+ ++. +||.+..|.|...+.|++||+||.|.+|.+.++++-+ ++. .+.+++....
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l~~~f~~~~~~~~~~~~~ 573 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFGSDRVKAFLDRLG 573 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchHHHhhCcHHHHHHHHHcC
Confidence 999999995 678 9999999999999999999999999999999998654 332 3555555544
No 98
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=3.3e-24 Score=222.57 Aligned_cols=378 Identities=17% Similarity=0.202 Sum_probs=233.1
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
.|++.| ++..+.-++.-+.+++||.|||+++.+|++..... +..|.|++|+..||.|
T Consensus 82 ~~ydVQ------liGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~----g~~VhIvT~ndyLA~R------------- 138 (908)
T PRK13107 82 RHFDVQ------LLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALT----GKGVHVITVNDYLARR------------- 138 (908)
T ss_pred CcCchH------HhcchHhcCCccccccCCCCchHHHHHHHHHHHhc----CCCEEEEeCCHHHHHH-------------
Confidence 467777 34444445666999999999999999998766544 3359999999999999
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
..+.+..+..++|+++.+..++.+.... .-.
T Consensus 139 --------------------------D~e~m~~l~~~lGlsv~~i~~~~~~~~r-----------------------~~~ 169 (908)
T PRK13107 139 --------------------------DAENNRPLFEFLGLTVGINVAGLGQQEK-----------------------KAA 169 (908)
T ss_pred --------------------------HHHHHHHHHHhcCCeEEEecCCCCHHHH-----------------------Hhc
Confidence 6777888888899999999988765332 223
Q ss_pred cCCcEEEeCchHH-HHHhhcCCCcc-----cCCccEEEEcchHHHHHH----------------HHHhhHHHHHHhcccc
Q 011884 165 SAVDILVATPGRL-MDHINATRGFT-----LEHLCYLVVDETDRLLRE----------------AYQAWLPTVLQLTRSD 222 (475)
Q Consensus 165 ~~~~Iii~Tp~~l-~~~l~~~~~~~-----~~~~~~lVvDE~H~l~~~----------------~~~~~i~~i~~~~~~~ 222 (475)
..++|+++||..| +++++..-... ...+.++||||+|+++-. ..+..+..+...+...
T Consensus 170 Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~ 249 (908)
T PRK13107 170 YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQ 249 (908)
T ss_pred CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhh
Confidence 4679999999999 88887652222 367889999999986521 1222223222222210
Q ss_pred -----------cccccccc--------------cccc---------cccccc-----c-------h---hhhc-------
Q 011884 223 -----------NENRFSDA--------------STFL---------PSAFGS-----L-------K---TIRR------- 246 (475)
Q Consensus 223 -----------~~~~~~~~--------------~~~~---------~~~~~~-----~-------~---~~~~------- 246 (475)
......+- ..++ ...+.. . + .+.+
T Consensus 250 ~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~ 329 (908)
T PRK13107 250 DKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQ 329 (908)
T ss_pred hhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 00000000 0000 000000 0 0 0000
Q ss_pred ccccc-----------CCCC-----------------------------CCc-cchheeeeceeeccCccccccccccCc
Q 011884 247 CGVER-----------GFKD-----------------------------KPY-PRLVKMVLSATLTQDPNKLAQLDLHHP 285 (475)
Q Consensus 247 ~~~~~-----------~~~~-----------------------------~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~ 285 (475)
.+.-. +..+ .+| ...+...+|+|......++... +..
T Consensus 330 dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~i--Y~l 407 (908)
T PRK13107 330 DNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHI--YGL 407 (908)
T ss_pred CCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHH--hCC
Confidence 00000 0000 000 0011444555543322222211 111
Q ss_pred eeeecCccccCCchhhhhhhhhccCCCcHHHHHHHHHh--cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEecccc
Q 011884 286 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 363 (475)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~ 363 (475)
.++.+....+......... ...+...|+..+.+.+.+ ..+.++||||.|++.++.+++.|.+.+ ++...+|+.+
T Consensus 408 ~Vv~IPTnkp~~R~d~~d~-iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~g---i~~~vLnak~ 483 (908)
T PRK13107 408 DTVVVPTNRPMVRKDMADL-VYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEK---IPHEVLNAKF 483 (908)
T ss_pred CEEECCCCCCccceeCCCc-EEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCC---CCeEeccCcc
Confidence 2222222222221111111 122333455455444442 268899999999999999999999877 8889999999
Q ss_pred CHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCC-------------------------------------CCcEEEEecC
Q 011884 364 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE-------------------------------------GVNNVVNYDK 406 (475)
Q Consensus 364 ~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip-------------------------------------~~~~Vv~~~~ 406 (475)
+..++..+.+.|+.|. |+|||+|.++|.||. +--+||....
T Consensus 484 ~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTer 561 (908)
T PRK13107 484 HEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTER 561 (908)
T ss_pred cHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEeccc
Confidence 9999999999999987 999999999999998 1126788888
Q ss_pred CCCHHHHHHHhhhccccCCCCcEEEEeechhH-------HHHHHHHHHhcCCCCCccCCChhhhh
Q 011884 407 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKADNDSCPIHSIPSSLIE 464 (475)
Q Consensus 407 ~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~ 464 (475)
+.|.---.|..||+||.|.+|.+.+|++-+|- +.+..+++.+.... -.++.+.++.
T Consensus 562 heSrRID~QLrGRaGRQGDPGss~f~lSlED~L~r~f~~~~~~~~~~~~~~~e--~~~i~~~~~~ 624 (908)
T PRK13107 562 HESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFASDRVSGMMKKLGMEE--GEAIEHPWVS 624 (908)
T ss_pred CchHHHHhhhhcccccCCCCCceeEEEEeCcHHHHHhChHHHHHHHHHcCCCC--CCccccHHHH
Confidence 88988999999999999999999988864333 44566666654322 2345444443
No 99
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.93 E-value=2.9e-24 Score=229.94 Aligned_cols=426 Identities=17% Similarity=0.120 Sum_probs=231.7
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHh-hh---hh
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN-SA---RC 77 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~-~~---~~ 77 (475)
|| .+|+.|.+....+..++..+..++++|+||+|||++|++|++... ++.+++|++||++|++|+. +. +.
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-----DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 44 689999998888888888889999999999999999999987643 2457999999999999995 33 33
Q ss_pred cccccccccccchhhhHHHhhh-ccccccccchh--hHHHH---Hhhcccc--c-c-eEeEccCCCchHHHHHHHhhccc
Q 011884 78 KYCCKNIFGLIADHSIAEMCVQ-FDSLLFISLPQ--VKDVF---AAIAPAV--G-L-SVGLAVGQSSIADEISELIKRPK 147 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~---~~~~~~~--~-~-~~~~~~g~~~~~~~~~~~~~~~~ 147 (475)
+.++ +-..+..++.++.|.+ |++.+...... ..... ..|...+ | + .+....+....+..+....+...
T Consensus 317 ~~~~--~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~ 394 (820)
T PRK07246 317 EVFH--IDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQ 394 (820)
T ss_pred HhcC--CcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCC
Confidence 3322 2344678889999995 98866432211 11111 1222211 1 0 01111112222222211111011
Q ss_pred cccCccCCchhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHH--HHhh-------HHHH---
Q 011884 148 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA--YQAW-------LPTV--- 215 (475)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~--~~~~-------i~~i--- 215 (475)
.-..+..+....++.-...++|+|+++..|+..+.... .+...+++||||||++.+.. +... ...+
T Consensus 395 ~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~ 472 (820)
T PRK07246 395 SSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKA 472 (820)
T ss_pred CCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHH
Confidence 11123345555666667889999999998887664432 35689999999999986431 0000 0100
Q ss_pred H----------------Hhc-------cccc-------------------c-ccccccccccc--cccccchhh------
Q 011884 216 L----------------QLT-------RSDN-------------------E-NRFSDASTFLP--SAFGSLKTI------ 244 (475)
Q Consensus 216 ~----------------~~~-------~~~~-------------------~-~~~~~~~~~~~--~~~~~~~~~------ 244 (475)
+ ..+ .... . ........++. ....+...-
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~ 552 (820)
T PRK07246 473 LSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKR 552 (820)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcc
Confidence 0 000 0000 0 00000000000 000000000
Q ss_pred --hccccccCCC--CCCcc-chheeeeceeec--cCccccccccccCceeeecCccccCCchhhhhhhh--hccC-----
Q 011884 245 --RRCGVERGFK--DKPYP-RLVKMVLSATLT--QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL--ICES----- 310 (475)
Q Consensus 245 --~~~~~~~~~~--~~~~~-~~~~i~~SaT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----- 310 (475)
..+..+.... ...++ ....|++|||++ +........++........ +.........+. ..+.
T Consensus 553 ~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~----~~~~~~~~~~~i~~~~p~~~~~~ 628 (820)
T PRK07246 553 VTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKI----EKDKKQDQLVVVDQDMPLVTETS 628 (820)
T ss_pred eeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecC----CCChHHccEEEeCCCCCCCCCCC
Confidence 0000000000 00111 235788999997 3333222233322111111 001000000000 0000
Q ss_pred -CCcHHHHHHHH---HhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEc
Q 011884 311 -KLKPLYLVALL---QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 386 (475)
Q Consensus 311 -~~~~~~l~~~l---~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t 386 (475)
..-...+.+.+ . ..+++++|+++|++..+.+++.|.... ..+ ...|... .+.+++++|++++..||++|
T Consensus 629 ~~~~~~~~~~~i~~~~-~~~g~~LVLFtS~~~l~~v~~~l~~~~---~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~ 701 (820)
T PRK07246 629 DEVYAEEIAKRLEELK-QLQQPILVLFNSKKHLLAVSDLLDQWQ---VSH-LAQEKNG--TAYNIKKRFDRGEQQILLGL 701 (820)
T ss_pred hHHHHHHHHHHHHHHH-hcCCCEEEEECcHHHHHHHHHHHhhcC---CcE-EEeCCCc--cHHHHHHHHHcCCCeEEEec
Confidence 00111222222 2 357899999999999999999997642 333 4445322 25678999999888999999
Q ss_pred CCcccCCCCCC--CcEEEEecCC------------------------------CCHHHHHHHhhhccccCCCCcEEEEee
Q 011884 387 DAMTRGMDVEG--VNNVVNYDKP------------------------------AYIKTYIHRAGRTARAGQLGRCFTLLH 434 (475)
Q Consensus 387 ~~~~~GiDip~--~~~Vv~~~~~------------------------------~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 434 (475)
+.++||||+|+ ...||+..+| .....+.|.+||..|...+..+++++|
T Consensus 702 ~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD 781 (820)
T PRK07246 702 GSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILD 781 (820)
T ss_pred chhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 99999999984 4556776655 124467799999999887766777777
Q ss_pred chh-H-HHHHHHHHHh
Q 011884 435 KDE-V-KRFKKLLQKA 448 (475)
Q Consensus 435 ~~~-~-~~~~~l~~~~ 448 (475)
++= . ..-+.+++.+
T Consensus 782 ~R~~~k~Yg~~~l~sL 797 (820)
T PRK07246 782 RRILTKSYGKQILASL 797 (820)
T ss_pred CcccccHHHHHHHHhC
Confidence 642 2 2334555555
No 100
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.93 E-value=2.8e-24 Score=234.10 Aligned_cols=197 Identities=15% Similarity=0.106 Sum_probs=133.7
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhh----hhccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA----RCKYC 80 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~----~~~~~ 80 (475)
.+||.|.+....+...+..+..++++||||+|||++|++|++...... +.+|+|.++|+.|.+|+... +++.+
T Consensus 257 e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~---~~~vvIsT~T~~LQ~Ql~~kDiP~L~~~~ 333 (928)
T PRK08074 257 EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK---EEPVVISTYTIQLQQQLLEKDIPLLQKIF 333 (928)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhcc---CCeEEEEcCCHHHHHHHHHhhHHHHHHHc
Confidence 789999998888888888889999999999999999999997655433 45799999999999999774 67777
Q ss_pred ccccccccchhhhHHHhhh-ccccccccchhhHHH-----HHhhcccc--c-c-eEeEccCCCchHHHHHHHh--hcccc
Q 011884 81 CKNIFGLIADHSIAEMCVQ-FDSLLFISLPQVKDV-----FAAIAPAV--G-L-SVGLAVGQSSIADEISELI--KRPKL 148 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~--~-~-~~~~~~g~~~~~~~~~~~~--~~~~~ 148 (475)
+.++-.++..+..++.|.+ |++.+.......... +..|...+ | + ......+....+..+.... +....
T Consensus 334 ~~~~~~~~lKGr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~~~~~~w~~i~~~~~~c~~~~ 413 (928)
T PRK08074 334 PFPVEAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDGESDGGKQ 413 (928)
T ss_pred CCCceEEEEEcccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCCCCcchHHHhhccCcccCCCC
Confidence 7788888999999999995 988775433222111 11222211 1 0 0111111122222222110 00111
Q ss_pred ccCccCCchhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHH
Q 011884 149 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 205 (475)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~ 205 (475)
...+.+++...++.....++|+|+++..|+..+.... .-+...+++||||||++.+
T Consensus 414 cp~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~-~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 414 SPWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEE-PLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred CCcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhc-ccCCCCCeEEEECCchHHH
Confidence 1223456666777777889999999999887764322 2357789999999999764
No 101
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=2.7e-25 Score=220.43 Aligned_cols=340 Identities=16% Similarity=0.177 Sum_probs=223.2
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
.+.|.|..|+ .-+.++..+|++|-|.+|||.++-.++...++.. .||||.+|-++|.+|=|+++..-
T Consensus 129 ~LDpFQ~~aI----~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k----QRVIYTSPIKALSNQKYREl~~E----- 195 (1041)
T KOG0948|consen 129 TLDPFQSTAI----KCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK----QRVIYTSPIKALSNQKYRELLEE----- 195 (1041)
T ss_pred ccCchHhhhh----hhhcCCceEEEEeecCCCcchHHHHHHHHHHHhc----CeEEeeChhhhhcchhHHHHHHH-----
Confidence 6788998874 3455789999999999999999999888887764 38999999999999976664221
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
|. .+++.+|+.. ++
T Consensus 196 ------------------------------F~--------DVGLMTGDVT----------------------------In 209 (1041)
T KOG0948|consen 196 ------------------------------FK--------DVGLMTGDVT----------------------------IN 209 (1041)
T ss_pred ------------------------------hc--------ccceeeccee----------------------------eC
Confidence 21 2344555543 23
Q ss_pred cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhh
Q 011884 165 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 244 (475)
Q Consensus 165 ~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (475)
+.+.-+|+|.+.|...+-+++ --+..+.-||+||+|.+-++.++-.++..+-.++.
T Consensus 210 P~ASCLVMTTEILRsMLYRGS-EvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~----------------------- 265 (1041)
T KOG0948|consen 210 PDASCLVMTTEILRSMLYRGS-EVMREVAWVIFDEIHYMRDKERGVVWEETIILLPD----------------------- 265 (1041)
T ss_pred CCCceeeeHHHHHHHHHhccc-hHhheeeeEEeeeehhccccccceeeeeeEEeccc-----------------------
Confidence 346789999999988777655 33577889999999988666555444433333222
Q ss_pred hccccccCCCCCCccchheeeeceeeccCccccccc--cccCceeeecCc------------------------cccCCc
Q 011884 245 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL--DLHHPLFLTTGE------------------------TRYKLP 298 (475)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~--~~~~~~~~~~~~------------------------~~~~~~ 298 (475)
+.+.+++|||+++......+. .-..|..+.... +.....
T Consensus 266 ---------------~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~Fre 330 (1041)
T KOG0948|consen 266 ---------------NVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFRE 330 (1041)
T ss_pred ---------------cceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccch
Confidence 457899999998654332221 111221111110 000000
Q ss_pred hhhhhh----hh--hcc-------------------CCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCC-
Q 011884 299 ERLESY----KL--ICE-------------------SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL- 352 (475)
Q Consensus 299 ~~~~~~----~~--~~~-------------------~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~- 352 (475)
+..... .. ..+ .....-.+...+.+....++|||+-|+.+|+.++-.+....-.
T Consensus 331 dnF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~ 410 (1041)
T KOG0948|consen 331 DNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNT 410 (1041)
T ss_pred HHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCC
Confidence 000000 00 000 0011224555555556779999999999999999877653211
Q ss_pred -----------------------------------ceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCC
Q 011884 353 -----------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 397 (475)
Q Consensus 353 -----------------------------------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~ 397 (475)
..+++++|||+-+--++-+.-.|.+|-.++|+||..++.|+|+|.
T Consensus 411 deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPA 490 (1041)
T KOG0948|consen 411 DEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPA 490 (1041)
T ss_pred hhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcc
Confidence 236899999998888888888999999999999999999999996
Q ss_pred CcEEEEecCC---------CCHHHHHHHhhhccccCCC--CcEEEEeec-hhHHHHHHHHHHhcCCCCCccCCChhhh
Q 011884 398 VNNVVNYDKP---------AYIKTYIHRAGRTARAGQL--GRCFTLLHK-DEVKRFKKLLQKADNDSCPIHSIPSSLI 463 (475)
Q Consensus 398 ~~~Vv~~~~~---------~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 463 (475)
-++ |+.... -|-.+|+|+.|||||+|.+ |-|++.++. =+....+.+++.....-.+.+.+.=+++
T Consensus 491 kTV-vFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMi 567 (1041)
T KOG0948|consen 491 KTV-VFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMI 567 (1041)
T ss_pred eeE-EEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHH
Confidence 554 443322 3567999999999999976 445555543 3445566666555444444455544444
No 102
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.92 E-value=6.1e-25 Score=224.51 Aligned_cols=346 Identities=20% Similarity=0.224 Sum_probs=236.3
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 81 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 81 (475)
|..+++.||.+++. .+.+..+.+.+..+||+.|||+++-+.++..+... +..++++.|..+.+..
T Consensus 220 gi~~~fewq~ecls--~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~---rr~~llilp~vsiv~E---------- 284 (1008)
T KOG0950|consen 220 GILKLFEWQAECLS--LPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR---RRNVLLILPYVSIVQE---------- 284 (1008)
T ss_pred hHHHHHHHHHHHhc--chhhhcccceEEeCCCccchHHHHHHHHHHHHHHH---hhceeEecceeehhHH----------
Confidence 66778999999974 67777789999999999999999999888776554 3369999998887655
Q ss_pred cccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHH
Q 011884 82 KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (475)
-...+..+..++|+.+..++|..+.....
T Consensus 285 -----------------------------k~~~l~~~~~~~G~~ve~y~g~~~p~~~~---------------------- 313 (1008)
T KOG0950|consen 285 -----------------------------KISALSPFSIDLGFPVEEYAGRFPPEKRR---------------------- 313 (1008)
T ss_pred -----------------------------HHhhhhhhccccCCcchhhcccCCCCCcc----------------------
Confidence 45556777788899999888776533221
Q ss_pred hhhcCCcEEEeCchHHHHHhhcCC-CcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 162 ELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 162 ~~~~~~~Iii~Tp~~l~~~l~~~~-~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
..-++.|+|.++-..+....- .-.+..+++|||||-|.+.+.+++..++.++..+.......
T Consensus 314 ---k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~-------------- 376 (1008)
T KOG0950|consen 314 ---KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLET-------------- 376 (1008)
T ss_pred ---cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhcccc--------------
Confidence 124799999998655543321 12356789999999999999999999999988765432221
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCc--cccccccccC----ceeeecC----ccccCC-----chhhhhhh
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP--NKLAQLDLHH----PLFLTTG----ETRYKL-----PERLESYK 305 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~--~~~~~~~~~~----~~~~~~~----~~~~~~-----~~~~~~~~ 305 (475)
..+.|.+|||+++.. ..+....+.. |...... ..-+.. -..+....
T Consensus 377 -------------------~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~ 437 (1008)
T KOG0950|consen 377 -------------------SVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLY 437 (1008)
T ss_pred -------------------ceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhh
Confidence 147899999997531 1111111110 1100000 000000 00000000
Q ss_pred hhccCCCcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCC--------------------------------
Q 011884 306 LICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGE-------------------------------- 351 (475)
Q Consensus 306 ~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~-------------------------------- 351 (475)
.........+.+..+..+. .+..+||||+++..|+.++..+...-+
T Consensus 438 ~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl 517 (1008)
T KOG0950|consen 438 SSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVL 517 (1008)
T ss_pred hhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHH
Confidence 0000000111222222111 345699999999999998865543100
Q ss_pred ---CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEec----CCCCHHHHHHHhhhccccC
Q 011884 352 ---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD----KPAYIKTYIHRAGRTARAG 424 (475)
Q Consensus 352 ---~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~----~~~s~~~~~Q~~GR~~R~~ 424 (475)
...++.++|+|++.++|..+...|++|...++++|+.+..|+++|..++++-.. ...+..+|.|++||+||.|
T Consensus 518 ~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~g 597 (1008)
T KOG0950|consen 518 AKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTG 597 (1008)
T ss_pred heeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcc
Confidence 124689999999999999999999999999999999999999999877666543 2356789999999999998
Q ss_pred CC--CcEEEEeechhHHHHHHHHHHhc
Q 011884 425 QL--GRCFTLLHKDEVKRFKKLLQKAD 449 (475)
Q Consensus 425 ~~--g~~~~~~~~~~~~~~~~l~~~~~ 449 (475)
-+ |.+++++...+.+.+.++++.--
T Consensus 598 idT~GdsiLI~k~~e~~~~~~lv~~~~ 624 (1008)
T KOG0950|consen 598 IDTLGDSILIIKSSEKKRVRELVNSPL 624 (1008)
T ss_pred cccCcceEEEeeccchhHHHHHHhccc
Confidence 54 88999999999988888776543
No 103
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.92 E-value=7.4e-24 Score=227.16 Aligned_cols=118 Identities=21% Similarity=0.245 Sum_probs=102.1
Q ss_pred CcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcC---CeEEEEEc
Q 011884 312 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG---KIQVLVSS 386 (475)
Q Consensus 312 ~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g---~~~iLv~t 386 (475)
.|...|..++... .+.++|||+.....+..+.+.|...+ +....++|+++..+|+.+++.|.+. ..-+|++|
T Consensus 471 gKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g---~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLST 547 (1033)
T PLN03142 471 GKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRG---YQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLST 547 (1033)
T ss_pred hHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHhccccCCceEEEEec
Confidence 4555666666533 57799999999999999999988665 8889999999999999999999763 34678999
Q ss_pred CCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEE
Q 011884 387 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 432 (475)
Q Consensus 387 ~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 432 (475)
.+++.|||+..+++||++++++++....|++||+.|.|+...|.++
T Consensus 548 rAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~Vy 593 (1033)
T PLN03142 548 RAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 593 (1033)
T ss_pred cccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEE
Confidence 9999999999999999999999999999999999999988776555
No 104
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=5.6e-24 Score=226.38 Aligned_cols=341 Identities=16% Similarity=0.158 Sum_probs=204.6
Q ss_pred ccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccc
Q 011884 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIF 85 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~ 85 (475)
.+++|..++..+......+..+++.||||+|||.+.+.++...+........+++++.|++++++++++++++...+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 47889999887766554444899999999999999999888877763235678999999999999988876665332211
Q ss_pred cccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhc
Q 011884 86 GLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 165 (475)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (475)
. ....+|......... ..... -......+....
T Consensus 276 ~---------------------------------------~~~~h~~~~~~~~~~-----~~~~~---~~~~~~~ds~~~ 308 (733)
T COG1203 276 I---------------------------------------GKSLHSSSKEPLLLE-----PDQDI---LLTLTTNDSYKK 308 (733)
T ss_pred c---------------------------------------cccccccccchhhhc-----ccccc---ceeEEecccccc
Confidence 0 000111111000000 00000 000000000000
Q ss_pred -CCcEEEeCchHHHHHhhcCCCcc-cC--CccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccc
Q 011884 166 -AVDILVATPGRLMDHINATRGFT-LE--HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 241 (475)
Q Consensus 166 -~~~Iii~Tp~~l~~~l~~~~~~~-~~--~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (475)
-..+.++||............+. +. ..+++|+||+|.+.+......+..++..+...
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~------------------- 369 (733)
T COG1203 309 LLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEA------------------- 369 (733)
T ss_pred eeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhC-------------------
Confidence 12455566655554322222122 11 24799999999886552334444444443331
Q ss_pred hhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCcc------ccCCchhhhhhhhhccCCCcHH
Q 011884 242 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET------RYKLPERLESYKLICESKLKPL 315 (475)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 315 (475)
+...+++|||+++-.................... ......... ..........
T Consensus 370 ------------------g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~ 428 (733)
T COG1203 370 ------------------GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKER---VDVEDGPQEE 428 (733)
T ss_pred ------------------CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccc---hhhhhhhhHh
Confidence 2367999999998766644333322211111100 000000000 0000000001
Q ss_pred HHHHHHH-hcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHH----cCCeEEEEEcCCcc
Q 011884 316 YLVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR----EGKIQVLVSSDAMT 390 (475)
Q Consensus 316 ~l~~~l~-~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~----~g~~~iLv~t~~~~ 390 (475)
....... -..+.+++|.|||+..|..+++.|++... ++..+||.+...+|++.++.+. .+...|+|+|++++
T Consensus 429 ~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~---~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIE 505 (733)
T COG1203 429 LIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP---KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIE 505 (733)
T ss_pred hhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC---CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEE
Confidence 1111111 12567999999999999999999998763 7999999999999998888655 46789999999999
Q ss_pred cCCCCCCCcEEEEecCCCCHHHHHHHhhhccccC--CCCcEEEEeechhHH
Q 011884 391 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG--QLGRCFTLLHKDEVK 439 (475)
Q Consensus 391 ~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~~ 439 (475)
.|+|+. .+.+|.--.| +..++||+||++|.| ..|..+++...+...
T Consensus 506 agvDid-fd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~ 553 (733)
T COG1203 506 AGVDID-FDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERGP 553 (733)
T ss_pred EEeccc-cCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccCCC
Confidence 999997 6766655555 899999999999999 567777776554333
No 105
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.91 E-value=3.8e-23 Score=218.56 Aligned_cols=200 Identities=19% Similarity=0.071 Sum_probs=127.1
Q ss_pred CCCcccchhhhhhhhhcCCCCC-----CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhh-
Q 011884 2 GISSLFPVQVAVWQETIGPGLF-----ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA- 75 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~-----~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~- 75 (475)
|| .+|+.|.+....+..++.. ++.++|+||||+|||++|++|++...... +.+|+|-+.|+.|.+|+...
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~---~k~vVIST~T~~LQeQL~~kD 98 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE---KKKLVISTATVALQEQLVSKD 98 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc---CCeEEEEcCCHHHHHHHHhhh
Confidence 45 6899999988888877766 47799999999999999999987765543 44799999999999999765
Q ss_pred ---hhcccccccccccchhhhHHHhhh-ccccccccch-----------------hhHHHHHh----hcc--cccceEeE
Q 011884 76 ---RCKYCCKNIFGLIADHSIAEMCVQ-FDSLLFISLP-----------------QVKDVFAA----IAP--AVGLSVGL 128 (475)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------------~~~~~~~~----~~~--~~~~~~~~ 128 (475)
+.+.++.++-.++.++..++.|.+ |+..+..... .....+.+ |.. ..|=...+
T Consensus 99 lP~l~~~l~~~~~~~llKGr~nYlCl~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~t~tGD~del 178 (697)
T PRK11747 99 LPLLLKISGLDFKFTLAKGRGRYVCPRKLAALASDEGTQQDLLLFLDDELTPPDEEEQKLLARLAKALATGKWDGDRDHW 178 (697)
T ss_pred hhHHHHHcCCCceEEEEcCccccccHHHHHHHhccccccchhhhhccccccCCCHHHHHHHHHHHHHHhcCCCcCcHhhC
Confidence 677778888889999999999995 8876632110 11111111 221 11100000
Q ss_pred -ccCCCchHHHHHHH--hhccccccCccCCchhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccC--CccEEEEcchHHH
Q 011884 129 -AVGQSSIADEISEL--IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLE--HLCYLVVDETDRL 203 (475)
Q Consensus 129 -~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~--~~~~lVvDE~H~l 203 (475)
.......+..+..- .+....-..+..++....+.....++|+|+++..|+..+......-+. +.+++||||||++
T Consensus 179 ~~~~~~~~w~~v~~~~~~C~~~~Cp~~~~Cf~~~ar~~a~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L 258 (697)
T PRK11747 179 PEPIDDSLWQRITTDKHSCLGRNCPYFRECPFFKARREIDEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHL 258 (697)
T ss_pred cCCCcHHHHHHhhcCccccCCCCCCCCccChHHHHHHHHhhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccch
Confidence 00111111111100 010111122334555555666678999999999887766431212333 4788999999997
Q ss_pred HH
Q 011884 204 LR 205 (475)
Q Consensus 204 ~~ 205 (475)
.+
T Consensus 259 ~d 260 (697)
T PRK11747 259 PD 260 (697)
T ss_pred HH
Confidence 64
No 106
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=4e-23 Score=214.87 Aligned_cols=133 Identities=20% Similarity=0.321 Sum_probs=107.3
Q ss_pred CCCCcc---cchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhh
Q 011884 1 MGISSL---FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARC 77 (475)
Q Consensus 1 ~~~~~~---~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~ 77 (475)
+||..| +|+|.++ ++.+..+++++.+|+||+|||++|.+|++..+... ..++|++||+.||.|
T Consensus 85 ~G~~~p~~~tp~qvQ~----I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g----~~v~IVTpTrELA~Q------ 150 (970)
T PRK12899 85 SGYHQQWDMVPYDVQI----LGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG----KPVHLVTVNDYLAQR------ 150 (970)
T ss_pred ccccCCCCCChHHHHH----hhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc----CCeEEEeCCHHHHHH------
Confidence 478888 9999886 45555689999999999999999999999777543 248999999999999
Q ss_pred cccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCch
Q 011884 78 KYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 157 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (475)
..+.+..+...+++++.+++|+.+...+...
T Consensus 151 ---------------------------------dae~m~~L~k~lGLsV~~i~GG~~~~eq~~~---------------- 181 (970)
T PRK12899 151 ---------------------------------DCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI---------------- 181 (970)
T ss_pred ---------------------------------HHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH----------------
Confidence 6666777777889999999999887666432
Q ss_pred hHHHhhhcCCcEEEeCchHH-HHHhhcCCCcccC-------CccEEEEcchHHHH
Q 011884 158 DVLQELQSAVDILVATPGRL-MDHINATRGFTLE-------HLCYLVVDETDRLL 204 (475)
Q Consensus 158 ~~~~~~~~~~~Iii~Tp~~l-~~~l~~~~~~~~~-------~~~~lVvDE~H~l~ 204 (475)
.+|+|+|+||+.+ +++++... ..++ .+.++|+||||+++
T Consensus 182 -------y~~DIVygTPgRLgfDyLrd~~-~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 182 -------YQCDVVYGTASEFGFDYLRDNS-IATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred -------cCCCEEEECCChhHHHHhhCCC-CCcCHHHhhcccccEEEEechhhhh
Confidence 2479999999999 99988642 3333 56899999999865
No 107
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.91 E-value=1.9e-22 Score=204.43 Aligned_cols=342 Identities=15% Similarity=0.088 Sum_probs=192.7
Q ss_pred cccchhhhhhhhhcCCCCCC-CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 83 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~-~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 83 (475)
.||.+|..|+..+.+++.+| +.+|+.|+||+|||.+++..+...+..+ ..++||||+-+++|+.|.+.+|.++.
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~--~~KRVLFLaDR~~Lv~QA~~af~~~~--- 239 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSG--WVKRVLFLADRNALVDQAYGAFEDFL--- 239 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcc--hhheeeEEechHHHHHHHHHHHHHhC---
Confidence 68999999999999999998 5699999999999998866554444443 34589999999999999655554443
Q ss_pred cccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhh
Q 011884 84 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 163 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (475)
+.. -....+.+...
T Consensus 240 ------------------------------------P~~-~~~n~i~~~~~----------------------------- 253 (875)
T COG4096 240 ------------------------------------PFG-TKMNKIEDKKG----------------------------- 253 (875)
T ss_pred ------------------------------------CCc-cceeeeecccC-----------------------------
Confidence 321 11111111110
Q ss_pred hcCCcEEEeCchHHHHHhhcC----CCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccc-ccccccccc
Q 011884 164 QSAVDILVATPGRLMDHINAT----RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD-ASTFLPSAF 238 (475)
Q Consensus 164 ~~~~~Iii~Tp~~l~~~l~~~----~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~-~~~~~~~~~ 238 (475)
..++.|.++|++++....... ..+....+++||+||||+-.-..+...+.++-..+... ..++.+ .....-.+|
T Consensus 254 ~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I~dYFdA~~~gL-TATP~~~~d~~T~~~F 332 (875)
T COG4096 254 DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSILDYFDAATQGL-TATPKETIDRSTYGFF 332 (875)
T ss_pred CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhHHHHHHHHHHHHhh-ccCccccccccccccc
Confidence 113589999999998876543 23556679999999999865544444444333222111 111100 000011111
Q ss_pred ccchhhhccccccCCCCCCccchheeeeceeeccCccccccccc--cCceeeecCccccCCchhhhhhhhhccCCC---c
Q 011884 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL--HHPLFLTTGETRYKLPERLESYKLICESKL---K 313 (475)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 313 (475)
++ ........+.++.+...-.++.+-.---... ..+....+ .....-..........+........+-... .
T Consensus 333 ~g-~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~--~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V 409 (875)
T COG4096 333 NG-EPTYAYSLEEAVEDGFLVPYKVIRIDTDFDL--DGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETV 409 (875)
T ss_pred CC-CcceeecHHHHhhccccCCCCceEEeeeccc--cCcCcCccchhhhhhccccCcccccccccccchhccccchHHHH
Confidence 11 1111122222232222222221111111100 00000000 000000000000111111110000001111 1
Q ss_pred HHHHHHHHHh--c--CCCeEEEEcCChHHHHHHHHHHhhcCCC--ceeeEEeccccCHHHHHHHHHHHHcC--CeEEEEE
Q 011884 314 PLYLVALLQS--L--GEEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLVS 385 (475)
Q Consensus 314 ~~~l~~~l~~--~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~--~~~~~~~~g~~~~~~r~~~~~~f~~g--~~~iLv~ 385 (475)
...+.+.+.. . .-+|+||||.+.++|+.+...+....+. +.-+..+.|.- ++-+..+..|... -.+|.++
T Consensus 410 ~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--~~~q~~Id~f~~ke~~P~Iait 487 (875)
T COG4096 410 ARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA--EQAQALIDNFIDKEKYPRIAIT 487 (875)
T ss_pred HHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc--hhhHHHHHHHHhcCCCCceEEe
Confidence 2233333333 1 1469999999999999999999876432 12344555543 3344567777663 3689999
Q ss_pred cCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhcccc
Q 011884 386 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 423 (475)
Q Consensus 386 t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~ 423 (475)
++++..|||+|.|-.+|++....|...|.|++||+.|.
T Consensus 488 vdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 488 VDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999999995
No 108
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.91 E-value=6.4e-23 Score=210.30 Aligned_cols=192 Identities=16% Similarity=0.031 Sum_probs=120.5
Q ss_pred hhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc----ccccc
Q 011884 10 QVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC----CKNIF 85 (475)
Q Consensus 10 Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~----~~~~~ 85 (475)
|.+.+..+...+.+++.++++||||+|||++|++|++..+... .+.++||++||++|++|+++.+..+. ..++-
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~--~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~ 79 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER--PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQ 79 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc--cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCee
Confidence 6777777888888889999999999999999999998876532 24589999999999999999876554 23455
Q ss_pred cccchhhhHHHhhh-ccccccccchhhHHHHHhhcccccc------eEeE----------ccCCCchHH---HHHHHhhc
Q 011884 86 GLIADHSIAEMCVQ-FDSLLFISLPQVKDVFAAIAPAVGL------SVGL----------AVGQSSIAD---EISELIKR 145 (475)
Q Consensus 86 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----------~~g~~~~~~---~~~~~~~~ 145 (475)
.++.....++.|.+ |+..+..+.......+..|...++. ...+ -+|+..... ......+.
T Consensus 80 ~~~lkGr~nYlCl~rl~~~l~~~~~~~~~~i~~W~~~T~~~~~~~~~~~~~~~~~~~~~~~tGD~~el~~~~~~~~~~~~ 159 (636)
T TIGR03117 80 AGFFPGSQEFVSPGALQELLDQSGYDKDPAVQLWIGQGGPLIHEAALIRCMSDAPTKMHWMTHDLKAVATLLNRQDDVTL 159 (636)
T ss_pred EEEEECCcccccHHHHHHHhcccchhHHHHHHHHHhcCCccccccchhccccchhhccCCCCCCHhhccCCcCcchhhhc
Confidence 56677888999995 8886654333333333444443320 0000 112111000 00000010
Q ss_pred cccccCccCCchhHHHhh---hcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHH
Q 011884 146 PKLEAGICYDPEDVLQEL---QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 205 (475)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~---~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~ 205 (475)
........+ .....+.. ...++|+|++|..|+..++... -.+...+++||||||++.+
T Consensus 160 ~~~~~~~~~-~~~~aR~~~~~a~~AdivItNHalL~~~~~~~~-~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 160 AIREDDEDK-RLVESREYEAEARRCRILFCTHAMLGLAFRDKW-GLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred cccCCCccc-HHHHHHHHhhccccCCEEEECHHHHHHHhhhhc-CCCCCCCEEEEeCCcchHH
Confidence 001111111 12222232 4678999999999887654422 2457789999999999754
No 109
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.91 E-value=2.2e-23 Score=189.61 Aligned_cols=184 Identities=32% Similarity=0.518 Sum_probs=144.5
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh-ccccceEEEcccHHHHHHHhhhhhcc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~-~~~~~vlil~Pt~~L~~q~~~~~~~~ 79 (475)
+|+..|+++|.+|++.+.. ++++++++|||+|||++++++++..+.... ..+++++|++|+++|+.|++
T Consensus 17 ~~~~~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~------ 86 (203)
T cd00268 17 LGFEKPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIA------ 86 (203)
T ss_pred cCCCCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHH------
Confidence 5888999999999887665 899999999999999999999988877641 24568999999999999954
Q ss_pred cccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhH
Q 011884 80 CCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 159 (475)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
+.+..+....+..+..++|+........
T Consensus 87 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 114 (203)
T cd00268 87 ---------------------------------EVARKLGKHTNLKVVVIYGGTSIDKQIR------------------- 114 (203)
T ss_pred ---------------------------------HHHHHHhccCCceEEEEECCCCHHHHHH-------------------
Confidence 4445555556788888888876544432
Q ss_pred HHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccc
Q 011884 160 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 239 (475)
Q Consensus 160 ~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 239 (475)
.+..+++|+|+||+.+...+.... ..+.+++++|+||+|++.+.++...+..+...+..
T Consensus 115 --~~~~~~~iiv~T~~~l~~~l~~~~-~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~------------------ 173 (203)
T cd00268 115 --KLKRGPHIVVATPGRLLDLLERGK-LDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK------------------ 173 (203)
T ss_pred --HhcCCCCEEEEChHHHHHHHHcCC-CChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc------------------
Confidence 222467999999999999887654 67889999999999999877777777777766532
Q ss_pred cchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCcee
Q 011884 240 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF 287 (475)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~ 287 (475)
..+.+++|||+++.........+.++..
T Consensus 174 --------------------~~~~~~~SAT~~~~~~~~~~~~~~~~~~ 201 (203)
T cd00268 174 --------------------DRQTLLFSATMPKEVRDLARKFLRNPVR 201 (203)
T ss_pred --------------------ccEEEEEeccCCHHHHHHHHHHCCCCEE
Confidence 3378999999998877777666666654
No 110
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=4.4e-22 Score=207.48 Aligned_cols=126 Identities=21% Similarity=0.262 Sum_probs=110.2
Q ss_pred CCcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC
Q 011884 311 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 388 (475)
Q Consensus 311 ~~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~ 388 (475)
..+...+.+.+... .+.++||||+|+..++.+++.|.+.+ +++..+||+++..+|.++++.|+.|+..|+|||+.
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~g---i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~ 501 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELG---IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINL 501 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhc---cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcCh
Confidence 34455555555543 56799999999999999999999876 88999999999999999999999999999999999
Q ss_pred cccCCCCCCCcEEEEec-----CCCCHHHHHHHhhhccccCCCCcEEEEeechhHHH
Q 011884 389 MTRGMDVEGVNNVVNYD-----KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 440 (475)
Q Consensus 389 ~~~GiDip~~~~Vv~~~-----~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 440 (475)
+++|+|+|++++||+++ .|.+...|+|++||+||. ..|.++++++..+..+
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~ 557 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSM 557 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHH
Confidence 99999999999999987 688999999999999998 4899999988755433
No 111
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.90 E-value=8.8e-23 Score=207.78 Aligned_cols=110 Identities=19% Similarity=0.165 Sum_probs=91.3
Q ss_pred eeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEec--CCCCHHHHHHHhhhccccCCCCcEEEE
Q 011884 355 KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD--KPAYIKTYIHRAGRTARAGQLGRCFTL 432 (475)
Q Consensus 355 ~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~--~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 432 (475)
+++++|++|+..+|..+.--|+.|...||++|.+++.|||+| |+.||+.+ +..++..|.|++|||||+|-+-.+-++
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMP-CrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~ 1042 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMP-CRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVV 1042 (1330)
T ss_pred cccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCC-ceeEEEeccccccCchhHHhhhccccccccccccceE
Confidence 589999999999999999999999999999999999999999 55566554 446789999999999999988666667
Q ss_pred eechhHHHHHHHHHHhcCCCCCccCCChhhhhh
Q 011884 433 LHKDEVKRFKKLLQKADNDSCPIHSIPSSLIES 465 (475)
Q Consensus 433 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 465 (475)
+-.-...++++++...-.+-....++.-..+-.
T Consensus 1043 FmgiP~~kv~rLlts~L~diqG~~p~T~~~~l~ 1075 (1330)
T KOG0949|consen 1043 FMGIPRQKVQRLLTSLLPDIQGAYPYTNTSFLG 1075 (1330)
T ss_pred EEeCcHHHHHHHHHHhhhcccCCCcchhhHHHH
Confidence 767778889999888777666666665554433
No 112
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.89 E-value=3.9e-22 Score=208.90 Aligned_cols=310 Identities=19% Similarity=0.250 Sum_probs=202.6
Q ss_pred hhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhH
Q 011884 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIA 94 (475)
Q Consensus 15 ~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~ 94 (475)
..++.++.+++-++|+||||||||+..-..+++.-. ..+.++.++-|+|--|..++++
T Consensus 56 ~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~---~~~g~I~~tQPRRlAArsvA~R------------------- 113 (845)
T COG1643 56 DEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL---GIAGKIGCTQPRRLAARSVAER------------------- 113 (845)
T ss_pred HHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc---ccCCeEEecCchHHHHHHHHHH-------------------
Confidence 345666667889999999999999865444554322 2334677777998766665333
Q ss_pred HHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCc
Q 011884 95 EMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 174 (475)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp 174 (475)
..+.+....|-.++.-. ..++ ....++.|-++|.
T Consensus 114 -------------------vAeel~~~~G~~VGY~i----Rfe~-----------------------~~s~~Trik~mTd 147 (845)
T COG1643 114 -------------------VAEELGEKLGETVGYSI----RFES-----------------------KVSPRTRIKVMTD 147 (845)
T ss_pred -------------------HHHHhCCCcCceeeEEE----Eeec-----------------------cCCCCceeEEecc
Confidence 22333333332222111 1111 0112458999999
Q ss_pred hHHHHHhhcCCCcccCCccEEEEcchHHHH-HHHH-HhhHHHHHHhccccccccccccccccccccccchhhhccccccC
Q 011884 175 GRLMDHINATRGFTLEHLCYLVVDETDRLL-REAY-QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 252 (475)
Q Consensus 175 ~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~-~~~~-~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (475)
+.|.+.+.. ...++.+++||+||+|+-. +.++ -..+..++...+
T Consensus 148 GiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr-------------------------------- 193 (845)
T COG1643 148 GILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRR-------------------------------- 193 (845)
T ss_pred HHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC--------------------------------
Confidence 999988875 3568899999999999742 2211 122223232221
Q ss_pred CCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCC-cHHHHHHHHH---hcCCCe
Q 011884 253 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVALLQ---SLGEEK 328 (475)
Q Consensus 253 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~---~~~~~~ 328 (475)
+.++.|++|||+. .+.+....-..| ++......+.+ .+...... .... -...+...+. ....|.
T Consensus 194 ------~DLKiIimSATld--~~rfs~~f~~ap-vi~i~GR~fPV--ei~Y~~~~-~~d~~l~~ai~~~v~~~~~~~~Gd 261 (845)
T COG1643 194 ------DDLKLIIMSATLD--AERFSAYFGNAP-VIEIEGRTYPV--EIRYLPEA-EADYILLDAIVAAVDIHLREGSGS 261 (845)
T ss_pred ------CCceEEEEecccC--HHHHHHHcCCCC-EEEecCCccce--EEEecCCC-CcchhHHHHHHHHHHHhccCCCCC
Confidence 1257899999984 344444333333 33333322222 11111111 1112 2223333332 235789
Q ss_pred EEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecC-
Q 011884 329 CIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK- 406 (475)
Q Consensus 329 ~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~- 406 (475)
+|||.+...+.+..++.|.+.. .....+..+||.++..+..++++.-..|+.+|+++|++.+.++-||++..||.-+.
T Consensus 262 ILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~a 341 (845)
T COG1643 262 ILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLA 341 (845)
T ss_pred EEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcc
Confidence 9999999999999999999822 24578999999999999999888888887889999999999999999999997553
Q ss_pred -----------------CCCHHHHHHHhhhccccCCCCcEEEEeechhHH
Q 011884 407 -----------------PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 439 (475)
Q Consensus 407 -----------------~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 439 (475)
|-|..+..||.|||||.+ +|.|+-+++.++..
T Consensus 342 k~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 342 KEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred cccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 356778999999999998 99999999986654
No 113
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.89 E-value=2.1e-21 Score=204.65 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=87.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcCCCc--eeeEEeccccCHH---------------------HHHHHHHHHHc-CCeE
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQS---------------------VRSKTLKAFRE-GKIQ 381 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~~~~--~~~~~~~g~~~~~---------------------~r~~~~~~f~~-g~~~ 381 (475)
+++++|+|.++.+|..+++.+.+..+.. .....+++..+.. ...+++++|++ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 4899999999999999999987753221 2344555543222 22478889976 5789
Q ss_pred EEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhcccc-CC-CCcEEEEeechhHHHHHHHHHHh
Q 011884 382 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA-GQ-LGRCFTLLHKDEVKRFKKLLQKA 448 (475)
Q Consensus 382 iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~-~~-~g~~~~~~~~~~~~~~~~l~~~~ 448 (475)
+||+++++.+|+|.|.+..+++..+-++.. ++|++||+.|. .. ...+.++.-.+..+.+.+-+..+
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h~-LlQai~R~nR~~~~~K~~g~IvDy~g~~~~l~~Al~~y 661 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYHG-LLQAIARTNRIDGKDKTFGLIVDYRGLEKSLIDALSLY 661 (667)
T ss_pred EEEEEcccccccCCCccceEEEeccccccH-HHHHHHHhccccCCCCCCEEEEECcChHHHHHHHHHHh
Confidence 999999999999999999888777777654 78999999994 32 22344444445556666655544
No 114
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.89 E-value=2.3e-22 Score=177.24 Aligned_cols=149 Identities=33% Similarity=0.513 Sum_probs=116.1
Q ss_pred cchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccccc
Q 011884 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFG 86 (475)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~ 86 (475)
+|+|.+++..+. +++++++.||||+|||++++.+++..+.+. +..++++++|+++|++|++++
T Consensus 1 t~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~--~~~~~lii~P~~~l~~q~~~~----------- 63 (169)
T PF00270_consen 1 TPLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEG--KDARVLIIVPTRALAEQQFER----------- 63 (169)
T ss_dssp -HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--SSSEEEEEESSHHHHHHHHHH-----------
T ss_pred CHHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccC--CCceEEEEeeccccccccccc-----------
Confidence 589999988776 478899999999999999999999877664 344899999999999995444
Q ss_pred ccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcC
Q 011884 87 LIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 166 (475)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (475)
+..+....+.++..++|+......... .+..+
T Consensus 64 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~ 95 (169)
T PF00270_consen 64 ----------------------------LRKFFSNTNVRVVLLHGGQSISEDQRE--------------------VLSNQ 95 (169)
T ss_dssp ----------------------------HHHHTTTTTSSEEEESTTSCHHHHHHH--------------------HHHTT
T ss_pred ----------------------------ccccccccccccccccccccccccccc--------------------ccccc
Confidence 444444467788888888775433222 22345
Q ss_pred CcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccc
Q 011884 167 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 221 (475)
Q Consensus 167 ~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~ 221 (475)
++|+|+||+++.+.+..... .+.+++++|+||+|.+....+...+..+++.+..
T Consensus 96 ~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 96 ADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR 149 (169)
T ss_dssp SSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT
T ss_pred ccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcC
Confidence 79999999999999987543 6677999999999999877777778888877543
No 115
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=8.8e-22 Score=209.95 Aligned_cols=200 Identities=13% Similarity=0.088 Sum_probs=129.0
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
|.|..++|.|.+.+..++..+..+.++++.+|||+|||++.+.+++++....+ ...+++|.+.|.+-..|..+++++.-
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-EVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-ccccEEEEcccchHHHHHHHHHHhhh
Confidence 56777899999999999999999999999999999999999999998776432 33589999999999999999999853
Q ss_pred ----c----cccccccchhhhHHHhhhccccccccchhhHHHHHhhcccc-c--------ceEeEccCCCch--------
Q 011884 81 ----C----KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV-G--------LSVGLAVGQSSI-------- 135 (475)
Q Consensus 81 ----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~g~~~~-------- 135 (475)
+ ...++.+...++..+|.+.+-.-..+.....+.+....... . ...+-++.+...
T Consensus 85 ~~~~~~~~~~~~i~~v~L~SR~~lCin~~v~~~~~~~~~~~~C~~l~~~~~~~~~~~~~~~~~C~yy~~~~~~~~~~~~~ 164 (705)
T TIGR00604 85 SYRTPRIGEESPVSGLSLASRKNLCLHPEVSKERQGKVVNGKCIKLTVSKIKEQRTEKPNVESCEFYENFDELREVEDLL 164 (705)
T ss_pred hccccccccCCceeEEEechHhhcccChHHHhhcchhhHHHHHHHHHhhhhcccccccCCCCCCCCCchhhhhhhhhhhc
Confidence 1 12367788899999998642111111111111222111000 0 000001111000
Q ss_pred ---HHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHHHhhcC-CCcccCCccEEEEcchHHHHH
Q 011884 136 ---ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT-RGFTLEHLCYLVVDETDRLLR 205 (475)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~-~~~~~~~~~~lVvDE~H~l~~ 205 (475)
..++..+.. .......+|+.+.+.....++|||+++..+++-.... -...+.+ .+|||||||++.+
T Consensus 165 ~~~~~diEdL~~---~g~~~~~CPY~~sr~~~~~advIi~pYnyl~dp~~r~~~~~~l~~-~ivI~DEAHNL~d 234 (705)
T TIGR00604 165 LSEIMDIEDLVE---YGELLGLCPYFATRKMLPFANIVLLPYQYLLDPKIRSAVSIELKD-SIVIFDEAHNLDN 234 (705)
T ss_pred ccCCCCHHHHHH---hcccCCCCccHHHHHhhhcCCEEEechHHhcCHHHHHHhhccccc-CEEEEECccchHH
Confidence 000111111 0112347899999999999999999998885532211 1123333 7899999998754
No 116
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.88 E-value=8e-22 Score=203.69 Aligned_cols=333 Identities=19% Similarity=0.170 Sum_probs=210.8
Q ss_pred CcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccc
Q 011884 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 83 (475)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 83 (475)
..+++.|..|+..+...+......++.|.||||||.+|+-.+...+.. |..+|+++|-.+|-.|+.++|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~----GkqvLvLVPEI~Ltpq~~~rf~~r---- 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ----GKQVLVLVPEIALTPQLLARFKAR---- 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc----CCEEEEEeccccchHHHHHHHHHH----
Confidence 357889999999888866223789999999999999998877777654 447999999999999975554333
Q ss_pred cccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhh
Q 011884 84 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 163 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (475)
++.++++++++-+..+....|.. ..
T Consensus 269 --------------------------------------Fg~~v~vlHS~Ls~~er~~~W~~-----------------~~ 293 (730)
T COG1198 269 --------------------------------------FGAKVAVLHSGLSPGERYRVWRR-----------------AR 293 (730)
T ss_pred --------------------------------------hCCChhhhcccCChHHHHHHHHH-----------------Hh
Confidence 24778888888877666544432 22
Q ss_pred hcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHH---HHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 164 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE---AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 164 ~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~---~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
.....|+|+| ++.-..++.++.+|||||-|.-.-+ +...+...+.-...
T Consensus 294 ~G~~~vVIGt--------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra-------------------- 345 (730)
T COG1198 294 RGEARVVIGT--------RSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRA-------------------- 345 (730)
T ss_pred cCCceEEEEe--------chhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHH--------------------
Confidence 3457999999 3323356889999999999964211 00111111111000
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhh----hhhhhhccCCCcHHH
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL----ESYKLICESKLKPLY 316 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 316 (475)
...+.+.|+-|||++-+.......+.+..............|... +......... -...
T Consensus 346 ----------------~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~-lS~~ 408 (730)
T COG1198 346 ----------------KKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRS-LSPA 408 (730)
T ss_pred ----------------HHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCcc-CCHH
Confidence 001336788899986544334433322222222222211111110 0000000000 1234
Q ss_pred HHHHHHhc--CCCeEEEEcCChH---------------------------------------------------------
Q 011884 317 LVALLQSL--GEEKCIVFTSSVE--------------------------------------------------------- 337 (475)
Q Consensus 317 l~~~l~~~--~~~~~lvf~~s~~--------------------------------------------------------- 337 (475)
+.+.+++. .++++|+|.|.+-
T Consensus 409 Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~ 488 (730)
T COG1198 409 LLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRA 488 (730)
T ss_pred HHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEE
Confidence 44445332 6779999998883
Q ss_pred ---HHHHHHHHHhhcCCCceeeEEeccccCH--HHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCC-----
Q 011884 338 ---STHRLCTLLNHFGELRIKIKEYSGLQRQ--SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP----- 407 (475)
Q Consensus 338 ---~~~~l~~~l~~~~~~~~~~~~~~g~~~~--~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~----- 407 (475)
-.+++.+.|++.. ++..+..+.++... ..-+..+..|.+|+.+|||+|+|+..|.|+|+++.|.+++..
T Consensus 489 ~G~GterieeeL~~~F-P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~ 567 (730)
T COG1198 489 VGPGTERIEEELKRLF-PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGS 567 (730)
T ss_pred ecccHHHHHHHHHHHC-CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcC
Confidence 3344444444432 12455555555433 334577999999999999999999999999999998877643
Q ss_pred -------CCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHH
Q 011884 408 -------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 445 (475)
Q Consensus 408 -------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~ 445 (475)
+....+.|-+||+||.+.+|.+++-....+...++.+.
T Consensus 568 ~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~ 612 (730)
T COG1198 568 PDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALK 612 (730)
T ss_pred CCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHH
Confidence 23557889999999998899999998776655554443
No 117
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.88 E-value=2e-21 Score=199.94 Aligned_cols=318 Identities=22% Similarity=0.264 Sum_probs=190.3
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 81 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 81 (475)
|| .|+..|.-+...++ .|+++-|.||||.|||+--++ +...+.. ++.++++++||..|+.|.++.+
T Consensus 80 G~-~~ws~QR~WakR~~----rg~SFaiiAPTGvGKTTfg~~-~sl~~a~---kgkr~yii~PT~~Lv~Q~~~kl----- 145 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLV----RGKSFAIIAPTGVGKTTFGLL-MSLYLAK---KGKRVYIIVPTTTLVRQVYERL----- 145 (1187)
T ss_pred CC-CchHHHHHHHHHHH----cCCceEEEcCCCCchhHHHHH-HHHHHHh---cCCeEEEEecCHHHHHHHHHHH-----
Confidence 55 89999987655554 599999999999999974433 3222322 4568999999999999965553
Q ss_pred cccccccchhhhHHHhhhccccccccchhhHHHHHhhcccc---cceEeEccCCCchHHHHHHHhhccccccCccCCchh
Q 011884 82 KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV---GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 158 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
+.++... ...+. +|+..+..+...
T Consensus 146 ----------------------------------~~~~e~~~~~~~~~~-yh~~l~~~ekee------------------ 172 (1187)
T COG1110 146 ----------------------------------KKFAEDAGSLDVLVV-YHSALPTKEKEE------------------ 172 (1187)
T ss_pred ----------------------------------HHHHhhcCCcceeee-eccccchHHHHH------------------
Confidence 4433322 34444 677655554432
Q ss_pred HHHhhhc-CCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccc--ccccc-
Q 011884 159 VLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD--ASTFL- 234 (475)
Q Consensus 159 ~~~~~~~-~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~--~~~~~- 234 (475)
....+.+ +.+|+|+|.+.+...+..... -+++++++|.+|.++..+ ..++.++..+.-........ ...+.
T Consensus 173 ~le~i~~gdfdIlitTs~FL~k~~e~L~~---~kFdfifVDDVDA~Lkas--kNvDriL~LlGf~eE~i~~a~~~~~lr~ 247 (1187)
T COG1110 173 ALERIESGDFDILITTSQFLSKRFEELSK---LKFDFIFVDDVDAILKAS--KNVDRLLRLLGFSEEVIESAYELIKLRR 247 (1187)
T ss_pred HHHHHhcCCccEEEEeHHHHHhhHHHhcc---cCCCEEEEccHHHHHhcc--ccHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 2233444 479999998888766665332 368999999999987654 44555555443221100000 00000
Q ss_pred ----ccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccC
Q 011884 235 ----PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 310 (475)
Q Consensus 235 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (475)
....+..+...+. .+..........-+.++.|||..+.-... ..++.-.-+..+.....+...++.+. .
T Consensus 248 ~~~~~~~~~~~~e~~~~-~e~~~~~~r~k~g~LvvsSATg~~rg~R~--~LfReLlgFevG~~~~~LRNIvD~y~-~--- 320 (1187)
T COG1110 248 KLYGEKRAERVREELRE-VEREREKKRRKLGILVVSSATGKPRGSRL--KLFRELLGFEVGSGGEGLRNIVDIYV-E--- 320 (1187)
T ss_pred HhhhhhhHHHHHHHHHH-HHHHHHHhccCCceEEEeeccCCCCCchH--HHHHHHhCCccCccchhhhheeeeec-c---
Confidence 0000000000000 00000000011125788899987754321 11111111222221111111111111 1
Q ss_pred CCcHHHHHHHHHhcCCCeEEEEcCC---hHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEc-
Q 011884 311 KLKPLYLVALLQSLGEEKCIVFTSS---VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS- 386 (475)
Q Consensus 311 ~~~~~~l~~~l~~~~~~~~lvf~~s---~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t- 386 (475)
......+.++++.. +...|||++. ++.++.+++.|+..+ +++..+|+. +.+.++.|..|+.++||++
T Consensus 321 ~~~~e~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~G---i~a~~~~a~-----~~~~le~F~~GeidvLVGvA 391 (1187)
T COG1110 321 SESLEKVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHG---INAELIHAE-----KEEALEDFEEGEVDVLVGVA 391 (1187)
T ss_pred CccHHHHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhcC---ceEEEeecc-----chhhhhhhccCceeEEEEec
Confidence 15556666777766 4578999999 999999999999877 999999974 3578999999999999887
Q ss_pred ---CCcccCCCCCC-CcEEEEecCC
Q 011884 387 ---DAMTRGMDVEG-VNNVVNYDKP 407 (475)
Q Consensus 387 ---~~~~~GiDip~-~~~Vv~~~~~ 407 (475)
+.+.+|+|+|. +..+|+++.|
T Consensus 392 syYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 392 SYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ccccceeecCCchhheeEEEEecCC
Confidence 47889999997 7889988866
No 118
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.88 E-value=6.5e-21 Score=203.13 Aligned_cols=199 Identities=15% Similarity=0.061 Sum_probs=116.0
Q ss_pred CcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccc
Q 011884 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 83 (475)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 83 (475)
-.||+.|.+.+..+...+..+..++++||||+|||++|++|++...... +.++++.++|+.|.+|+.++........
T Consensus 14 ~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~---~~~viist~t~~lq~q~~~~~~~~~~~~ 90 (654)
T COG1199 14 FEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE---GKKVIISTRTKALQEQLLEEDLPIHKLL 90 (654)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc---CCcEEEECCCHHHHHHHHHhhcchhhhh
Confidence 3799999999998888887788899999999999999999999877654 3579999999999999999866652221
Q ss_pred c----ccccchhhhHHHhhh-ccccccccchhhH--H-----HHHh---hcccc---cce-EeEccCCCchHHHHHHHhh
Q 011884 84 I----FGLIADHSIAEMCVQ-FDSLLFISLPQVK--D-----VFAA---IAPAV---GLS-VGLAVGQSSIADEISELIK 144 (475)
Q Consensus 84 ~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~-----~~~~---~~~~~---~~~-~~~~~g~~~~~~~~~~~~~ 144 (475)
. ..+...+..++.|.. +...+..+..+.. . .+.+ +...+ +.. .....+.............
T Consensus 91 ~~~~~~~~~~kgr~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (654)
T COG1199 91 KKLGGKFALLKGRSNYLCLSRLERLAQLGGDDDDYLQSLALKALADLLVWLTETKTGDLRELTPKALDDPLWTLVTDDKD 170 (654)
T ss_pred hhhhhHHHHHhccccccchHHHHHHHHccCcchhHHhhhhHHHHHHHHHHhhcCCCCChhhccccccccchhhhhhcccc
Confidence 1 234555555666663 5543322221111 1 1111 11100 000 0000111111111110000
Q ss_pred cccc--ccCccCCchhHHHhhhcCCcEEEeCchHHHHHhhcCCCcc-cCCccEEEEcchHHHHH
Q 011884 145 RPKL--EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLR 205 (475)
Q Consensus 145 ~~~~--~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~-~~~~~~lVvDE~H~l~~ 205 (475)
.... -.....++..........++++|+++..++.......... +..-+++|+||||++.+
T Consensus 171 ~~~~~~cp~~~~c~~~~~~~~~~~ad~vv~nh~~~~~~~~~~~~~~~~p~~~v~v~DEAH~l~d 234 (654)
T COG1199 171 SCLGEDCPYYTECFYFPARKEAENADLVVTNHALLLADVALEESRILLPENDVVVFDEAHNLPD 234 (654)
T ss_pred cccccCCcchhhhHHHHHHHHHhhCCEEEEccHHHHhHHHhhhhhccCCcccEEEEeccccchH
Confidence 0000 0111222333344444678999999999877554433221 45678999999998654
No 119
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.87 E-value=1.7e-21 Score=193.19 Aligned_cols=310 Identities=19% Similarity=0.267 Sum_probs=200.4
Q ss_pred hhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHH
Q 011884 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAE 95 (475)
Q Consensus 16 ~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 95 (475)
.++..+.+++-++|.|.||||||+..--.+.+.-. ...+++.+.-|+|.-|.-++++
T Consensus 58 ~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~---~~~g~I~~TQPRRVAavslA~R-------------------- 114 (674)
T KOG0922|consen 58 QILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGF---ASSGKIACTQPRRVAAVSLAKR-------------------- 114 (674)
T ss_pred HHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccc---ccCCcEEeecCchHHHHHHHHH--------------------
Confidence 45666667889999999999999753332322211 1233477777999888776443
Q ss_pred HhhhccccccccchhhHHHH-HhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCc
Q 011884 96 MCVQFDSLLFISLPQVKDVF-AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 174 (475)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp 174 (475)
+++.. -.++...|-.+-.-... ...+.|.+.|.
T Consensus 115 ---------------VAeE~~~~lG~~VGY~IRFed~t-------------------------------s~~TrikymTD 148 (674)
T KOG0922|consen 115 ---------------VAEEMGCQLGEEVGYTIRFEDST-------------------------------SKDTRIKYMTD 148 (674)
T ss_pred ---------------HHHHhCCCcCceeeeEEEecccC-------------------------------CCceeEEEecc
Confidence 12111 11222222222221111 11357999999
Q ss_pred hHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhhhccccccCCC
Q 011884 175 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 254 (475)
Q Consensus 175 ~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (475)
++|++.+.. ...++.+++||+||||+-. -....+-.+++.+-...
T Consensus 149 G~LLRE~l~--Dp~LskYsvIIlDEAHERs--l~TDiLlGlLKki~~~R------------------------------- 193 (674)
T KOG0922|consen 149 GMLLREILK--DPLLSKYSVIILDEAHERS--LHTDILLGLLKKILKKR------------------------------- 193 (674)
T ss_pred hHHHHHHhc--CCccccccEEEEechhhhh--hHHHHHHHHHHHHHhcC-------------------------------
Confidence 999887664 3568899999999999631 12333334443322211
Q ss_pred CCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcH---HHHHHHHHhcCCCeEEE
Q 011884 255 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP---LYLVALLQSLGEEKCIV 331 (475)
Q Consensus 255 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~lv 331 (475)
+.++.|++|||+. ...+...+...+. +........+ .+.... .....+-. ..+.++....+.+-+||
T Consensus 194 ----~~LklIimSATld--a~kfS~yF~~a~i-~~i~GR~fPV--ei~y~~-~p~~dYv~a~~~tv~~Ih~~E~~GDILv 263 (674)
T KOG0922|consen 194 ----PDLKLIIMSATLD--AEKFSEYFNNAPI-LTIPGRTFPV--EILYLK-EPTADYVDAALITVIQIHLTEPPGDILV 263 (674)
T ss_pred ----CCceEEEEeeeec--HHHHHHHhcCCce-EeecCCCCce--eEEecc-CCchhhHHHHHHHHHHHHccCCCCCEEE
Confidence 1247899999984 3444444434333 3322222111 111111 11111222 22333333457789999
Q ss_pred EcCChHHHHHHHHHHhhcCC-C----ceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecC
Q 011884 332 FTSSVESTHRLCTLLNHFGE-L----RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 406 (475)
Q Consensus 332 f~~s~~~~~~l~~~l~~~~~-~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~ 406 (475)
|.+..++.+.+++.|.+... . ..-+..+||.++.++..++.+.-..|..+++++|++.+..+-||++..||..+.
T Consensus 264 FLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~ 343 (674)
T KOG0922|consen 264 FLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGF 343 (674)
T ss_pred EeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCc
Confidence 99999999999999988631 1 114678999999999999988888899999999999999999999999997552
Q ss_pred ------------------CCCHHHHHHHhhhccccCCCCcEEEEeechhHHH
Q 011884 407 ------------------PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 440 (475)
Q Consensus 407 ------------------~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 440 (475)
|-|...-.||.|||||.+ +|+|+-++.+++..+
T Consensus 344 vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 344 VKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDK 394 (674)
T ss_pred eEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhh
Confidence 357889999999999999 999999999877743
No 120
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.86 E-value=6.7e-20 Score=183.17 Aligned_cols=372 Identities=19% Similarity=0.174 Sum_probs=220.1
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
.+++||.+-+++++....+|-+.|+...+|-|||+..+. .+..+.......+.-||++|--.|. .|..+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs-~l~yl~~~~~~~GPfLVi~P~StL~-NW~~E--------- 235 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTIS-LLGYLKGRKGIPGPFLVIAPKSTLD-NWMNE--------- 235 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHH-HHHHHHHhcCCCCCeEEEeeHhhHH-HHHHH---------
Confidence 689999999999999999999999999999999987644 5555554222234699999976664 43444
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
+++|++ ++++.+++|+............ ..
T Consensus 236 ------------------------------f~rf~P--~l~~~~~~Gdk~eR~~~~r~~~------------------~~ 265 (971)
T KOG0385|consen 236 ------------------------------FKRFTP--SLNVVVYHGDKEERAALRRDIM------------------LP 265 (971)
T ss_pred ------------------------------HHHhCC--CcceEEEeCCHHHHHHHHHHhh------------------cc
Confidence 444444 6888999998754433322111 11
Q ss_pred cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHH----------------------hhHHHHHHhcccc
Q 011884 165 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ----------------------AWLPTVLQLTRSD 222 (475)
Q Consensus 165 ~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~----------------------~~i~~i~~~~~~~ 222 (475)
...+|+|||+++.++.-.- +.--+++++||||||++-+.... +.+..+...++..
T Consensus 266 ~~fdV~iTsYEi~i~dk~~---lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFl 342 (971)
T KOG0385|consen 266 GRFDVCITSYEIAIKDKSF---LKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFL 342 (971)
T ss_pred CCCceEeehHHHHHhhHHH---HhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhh
Confidence 2569999999998764322 22335889999999998543211 1111122222222
Q ss_pred cccccccccccccccccc-----chh------hhcc----ccccCCCCCCccchheeeeceeeccCccc-----------
Q 011884 223 NENRFSDASTFLPSAFGS-----LKT------IRRC----GVERGFKDKPYPRLVKMVLSATLTQDPNK----------- 276 (475)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~-----~~~------~~~~----~~~~~~~~~~~~~~~~i~~SaT~~~~~~~----------- 276 (475)
-+..|.+...|-.++... ... +.++ ++...+. ...|...-+.+-..++.-..+
T Consensus 343 lPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe-~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~ 421 (971)
T KOG0385|consen 343 LPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVE-KSLPPKKELIIYVGMSSMQKKWYKAILMKDLD 421 (971)
T ss_pred chhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHh-hcCCCcceeeEeccchHHHHHHHHHHHHhcch
Confidence 222222222111111110 000 0000 0000000 001111101111111110001
Q ss_pred ------------------cccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHHHHhc--CCCeEEEEcCCh
Q 011884 277 ------------------LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSV 336 (475)
Q Consensus 277 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~s~ 336 (475)
..+..+++|..+...... .....-. ..+....|...|..++... .++++|||..-.
T Consensus 422 ~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg-~pyttde---hLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt 497 (971)
T KOG0385|consen 422 ALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG-PPYTTDE---HLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMT 497 (971)
T ss_pred hhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC-CCCCcch---HHHhcCcceehHHHHHHHHHhCCCeEEEeHHHH
Confidence 112344445444332221 1111111 2223334455555555432 588999998877
Q ss_pred HHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCC---eEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHH
Q 011884 337 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 413 (475)
Q Consensus 337 ~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~---~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~ 413 (475)
...+.+.++..-++ +..+-+.|.++.++|...++.|.... .=+|++|.+.+.|||+..++.||+|+..++|..-
T Consensus 498 ~mLDILeDyc~~R~---y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~D 574 (971)
T KOG0385|consen 498 RMLDILEDYCMLRG---YEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVD 574 (971)
T ss_pred HHHHHHHHHHHhcC---ceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhh
Confidence 77776666665444 88999999999999999999998743 4577999999999999999999999999999999
Q ss_pred HHHhhhccccCCCCcEEEE--eech--hHHHHHHHHHHh
Q 011884 414 IHRAGRTARAGQLGRCFTL--LHKD--EVKRFKKLLQKA 448 (475)
Q Consensus 414 ~Q~~GR~~R~~~~g~~~~~--~~~~--~~~~~~~l~~~~ 448 (475)
.|+.-||.|.|+...+.+| ++.+ +...+++-+.++
T Consensus 575 LQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL 613 (971)
T KOG0385|consen 575 LQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKL 613 (971)
T ss_pred hHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHh
Confidence 9999999999988777665 4433 233444444443
No 121
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.85 E-value=2e-19 Score=189.07 Aligned_cols=135 Identities=22% Similarity=0.299 Sum_probs=115.2
Q ss_pred CcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCc
Q 011884 312 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 389 (475)
Q Consensus 312 ~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~ 389 (475)
.+...+.+.+... .+.+++|||+|+..++.+++.|.+.+ +++..+||+++..+|.++++.|+.|+..++|+|+.+
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~g---i~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L 506 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELG---IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLL 506 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcc---eeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHH
Confidence 3455555555433 56799999999999999999999866 899999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEecC-----CCCHHHHHHHhhhccccCCCCcEEEEeec---------hhHHHHHHHHHHhcC
Q 011884 390 TRGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHK---------DEVKRFKKLLQKADN 450 (475)
Q Consensus 390 ~~GiDip~~~~Vv~~~~-----~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~---------~~~~~~~~l~~~~~~ 450 (475)
++|+|+|++++||+++. |.+...|+||+||+||. ..|.++++++. .+...++++...+..
T Consensus 507 ~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 580 (652)
T PRK05298 507 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNE 580 (652)
T ss_pred hCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999875 67899999999999996 58999999884 566666666655543
No 122
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=6.4e-20 Score=175.22 Aligned_cols=309 Identities=21% Similarity=0.242 Sum_probs=204.0
Q ss_pred CcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccc
Q 011884 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 83 (475)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 83 (475)
..+||+|+.++.+++.+.. .+.-+|..|+|+|||++-+-++.. -+.++|++|.+..-++||
T Consensus 301 t~iRpYQEksL~KMFGNgR-ARSGiIVLPCGAGKtLVGvTAa~t-------ikK~clvLcts~VSVeQW----------- 361 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKTLVGVTAACT-------IKKSCLVLCTSAVSVEQW----------- 361 (776)
T ss_pred cccCchHHHHHHHHhCCCc-ccCceEEEecCCCCceeeeeeeee-------ecccEEEEecCccCHHHH-----------
Confidence 3689999999999988542 267788999999999876544332 233699999999999995
Q ss_pred cccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhh
Q 011884 84 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 163 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (475)
...+..|+.-.+-.++.++++.. +..
T Consensus 362 ----------------------------kqQfk~wsti~d~~i~rFTsd~K--------------------------e~~ 387 (776)
T KOG1123|consen 362 ----------------------------KQQFKQWSTIQDDQICRFTSDAK--------------------------ERF 387 (776)
T ss_pred ----------------------------HHHHHhhcccCccceEEeecccc--------------------------ccC
Confidence 44455555554556666665532 123
Q ss_pred hcCCcEEEeCchHH-------------HHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccc
Q 011884 164 QSAVDILVATPGRL-------------MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 230 (475)
Q Consensus 164 ~~~~~Iii~Tp~~l-------------~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~ 230 (475)
..++.|+|+|+.++ +++++ -..+.++++||+|.+....|+..+..+-...
T Consensus 388 ~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~------~~EWGllllDEVHvvPA~MFRRVlsiv~aHc----------- 450 (776)
T KOG1123|consen 388 PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLR------GREWGLLLLDEVHVVPAKMFRRVLSIVQAHC----------- 450 (776)
T ss_pred CCCCcEEEEeeehhhhcccccHHHHHHHHHHh------cCeeeeEEeehhccchHHHHHHHHHHHHHHh-----------
Confidence 34678999998665 33333 3458999999999998888876665555442
Q ss_pred ccccccccccchhhhccccccCCCCCCccchheeeeceeeccCcccccccc-ccCceeeecC----------------cc
Q 011884 231 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD-LHHPLFLTTG----------------ET 293 (475)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~-~~~~~~~~~~----------------~~ 293 (475)
.+.++||+.++-+.+..+. +..|..+... ..
T Consensus 451 --------------------------------KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEV 498 (776)
T KOG1123|consen 451 --------------------------------KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEV 498 (776)
T ss_pred --------------------------------hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeee
Confidence 3677888776544433321 1111111000 00
Q ss_pred ccCCc----------hhhhhhhhhccCCCcHHH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEec
Q 011884 294 RYKLP----------ERLESYKLICESKLKPLY---LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 360 (475)
Q Consensus 294 ~~~~~----------~~~~~~~~~~~~~~~~~~---l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~ 360 (475)
.-... ...+..........|+.. |+...+. .+.++|||..++-.....+-.|.+ -+++
T Consensus 499 WCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K--------pfIY 569 (776)
T KOG1123|consen 499 WCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK--------PFIY 569 (776)
T ss_pred ecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC--------ceEE
Confidence 00000 001111222233344433 4443333 788999999888777766665543 3588
Q ss_pred cccCHHHHHHHHHHHHcC-CeEEEEEcCCcccCCCCCCCcEEEEecCC-CCHHHHHHHhhhccccCC---C---CcEEEE
Q 011884 361 GLQRQSVRSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVNNVVNYDKP-AYIKTYIHRAGRTARAGQ---L---GRCFTL 432 (475)
Q Consensus 361 g~~~~~~r~~~~~~f~~g-~~~iLv~t~~~~~GiDip~~~~Vv~~~~~-~s~~~~~Q~~GR~~R~~~---~---g~~~~~ 432 (475)
|..++.||.++++.|+.+ +.+.++.+-+....+|+|..+++|..... .|.-.-.||.||..|..+ . ...+.+
T Consensus 570 G~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSL 649 (776)
T KOG1123|consen 570 GPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSL 649 (776)
T ss_pred CCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeee
Confidence 999999999999999975 58999999999999999999999987754 578899999999999542 1 234455
Q ss_pred eechhHHHHHH
Q 011884 433 LHKDEVKRFKK 443 (475)
Q Consensus 433 ~~~~~~~~~~~ 443 (475)
+..+..++...
T Consensus 650 VS~DTqEM~YS 660 (776)
T KOG1123|consen 650 VSKDTQEMYYS 660 (776)
T ss_pred eecchHHHHhh
Confidence 66666666653
No 123
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=5.9e-20 Score=191.92 Aligned_cols=150 Identities=20% Similarity=0.247 Sum_probs=117.9
Q ss_pred cCCCcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEc
Q 011884 309 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 386 (475)
Q Consensus 309 ~~~~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t 386 (475)
+...|...+.+.+... .+.++||||+|++.++.+++.|...+ +....+|+ ...+|+..+..|+.+...|+|||
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~g---I~h~vLna--kq~~REa~Iia~AG~~g~VtIAT 653 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKR---IAHNVLNA--KQHDREAEIVAEAGQKGAVTIAT 653 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcC---CCceeecC--CHHHhHHHHHHhcCCCCeEEEec
Confidence 3345677777777543 78899999999999999999999877 88889997 46789999999999999999999
Q ss_pred CCcccCCCCC---CCc-----EEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHH-------HHHHHHHHhcCC
Q 011884 387 DAMTRGMDVE---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK-------RFKKLLQKADND 451 (475)
Q Consensus 387 ~~~~~GiDip---~~~-----~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~-------~~~~l~~~~~~~ 451 (475)
+|.++|+||+ ++. +||....|.|...+.|++||+||.|.+|.+++|++.+|.- .+.++++.....
T Consensus 654 NMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~~~ 733 (1025)
T PRK12900 654 NMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVISVMDRLGHE 733 (1025)
T ss_pred cCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHHHHHHHHcCCC
Confidence 9999999999 443 3577888899999999999999999999999998764432 344555544321
Q ss_pred CCCccCCChhhhhh
Q 011884 452 SCPIHSIPSSLIES 465 (475)
Q Consensus 452 ~~~~~~~~~~~~~~ 465 (475)
...++.+.++..
T Consensus 734 --e~e~I~~~~i~k 745 (1025)
T PRK12900 734 --EGDVIEHSMITK 745 (1025)
T ss_pred --CCCcccchHHHH
Confidence 233455554443
No 124
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.3e-19 Score=178.43 Aligned_cols=305 Identities=18% Similarity=0.214 Sum_probs=197.9
Q ss_pred hcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHH
Q 011884 17 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEM 96 (475)
Q Consensus 17 ~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (475)
++.++..++-++|.|.||||||...--.+...=.. .++.++-+.-|+|.-|.-++++
T Consensus 273 ll~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt--k~gk~IgcTQPRRVAAmSVAaR--------------------- 329 (902)
T KOG0923|consen 273 LLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT--KGGKKIGCTQPRRVAAMSVAAR--------------------- 329 (902)
T ss_pred HHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc--cCCceEeecCcchHHHHHHHHH---------------------
Confidence 45555668889999999999998533222221111 2344466777999988886433
Q ss_pred hhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchH
Q 011884 97 CVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 176 (475)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~ 176 (475)
..+.++..+|-. +|.+-..++.. ...+-|-++|.++
T Consensus 330 -----------------VA~EMgvkLG~e----VGYsIRFEdcT-----------------------SekTvlKYMTDGm 365 (902)
T KOG0923|consen 330 -----------------VAEEMGVKLGHE----VGYSIRFEDCT-----------------------SEKTVLKYMTDGM 365 (902)
T ss_pred -----------------HHHHhCcccccc----cceEEEecccc-----------------------Ccceeeeeecchh
Confidence 333333332221 22111111110 0234688999999
Q ss_pred HHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhhhccccccCCCCC
Q 011884 177 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 256 (475)
Q Consensus 177 l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (475)
|++-+.. ...+.+++++||||||.-. -....+..++..+...
T Consensus 366 LlREfL~--epdLasYSViiiDEAHERT--L~TDILfgLvKDIar~---------------------------------- 407 (902)
T KOG0923|consen 366 LLREFLS--EPDLASYSVIIVDEAHERT--LHTDILFGLVKDIARF---------------------------------- 407 (902)
T ss_pred HHHHHhc--cccccceeEEEeehhhhhh--hhhhHHHHHHHHHHhh----------------------------------
Confidence 9876553 4678999999999999631 1122333333322211
Q ss_pred CccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHHH-------HhcCCCeE
Q 011884 257 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL-------QSLGEEKC 329 (475)
Q Consensus 257 ~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-------~~~~~~~~ 329 (475)
-|.++.++.|||+. .+.+... +.+..++.....+..+ ..++ ........+.+.+ ...+.|-+
T Consensus 408 -RpdLKllIsSAT~D--AekFS~f-FDdapIF~iPGRRyPV----di~Y---t~~PEAdYldAai~tVlqIH~tqp~GDI 476 (902)
T KOG0923|consen 408 -RPDLKLLISSATMD--AEKFSAF-FDDAPIFRIPGRRYPV----DIFY---TKAPEADYLDAAIVTVLQIHLTQPLGDI 476 (902)
T ss_pred -CCcceEEeeccccC--HHHHHHh-ccCCcEEeccCcccce----eeec---ccCCchhHHHHHHhhheeeEeccCCccE
Confidence 13457888999983 4444443 3344445444444332 1112 2222222222222 23377899
Q ss_pred EEEcCChHHHHHHHHHHhhcC------CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEE
Q 011884 330 IVFTSSVESTHRLCTLLNHFG------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 403 (475)
Q Consensus 330 lvf~~s~~~~~~l~~~l~~~~------~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~ 403 (475)
|||....+..+...+.|.+.. ...+-+..+|+.++++...++.+.--.|-.+|++||++.+..+-|+++..||.
T Consensus 477 LVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViD 556 (902)
T KOG0923|consen 477 LVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVID 556 (902)
T ss_pred EEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEec
Confidence 999999998888887777642 24567889999999999999988888888999999999999999999999996
Q ss_pred ec------------------CCCCHHHHHHHhhhccccCCCCcEEEEeechhH
Q 011884 404 YD------------------KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 438 (475)
Q Consensus 404 ~~------------------~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 438 (475)
-+ .|.|...-.||+||+||.| +|+|+-+++....
T Consensus 557 pGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY 608 (902)
T KOG0923|consen 557 PGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAY 608 (902)
T ss_pred CccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhh
Confidence 44 2467788899999999999 9999999885443
No 125
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=1.1e-18 Score=177.61 Aligned_cols=352 Identities=18% Similarity=0.171 Sum_probs=206.8
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
.|++.|.-....++ .|+ +.++.||.|||+++.++++..... |..|.+++|+..||.|
T Consensus 78 r~ydvQlig~l~Ll----~G~--VaEM~TGEGKTLvA~l~a~l~AL~----G~~VhvvT~NdyLA~R------------- 134 (764)
T PRK12326 78 RPFDVQLLGALRLL----AGD--VIEMATGEGKTLAGAIAAAGYALQ----GRRVHVITVNDYLARR------------- 134 (764)
T ss_pred CcchHHHHHHHHHh----CCC--cccccCCCCHHHHHHHHHHHHHHc----CCCeEEEcCCHHHHHH-------------
Confidence 57788866544332 344 789999999999999988766544 4469999999999999
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
.++.+..+..++|+++++++++.+..+... .
T Consensus 135 --------------------------Dae~m~~ly~~LGLsvg~i~~~~~~~err~-----------------------a 165 (764)
T PRK12326 135 --------------------------DAEWMGPLYEALGLTVGWITEESTPEERRA-----------------------A 165 (764)
T ss_pred --------------------------HHHHHHHHHHhcCCEEEEECCCCCHHHHHH-----------------------H
Confidence 667778888889999999998876554433 2
Q ss_pred cCCcEEEeCchHH-----HHHhhc-CCCcccCCccEEEEcchHHHH-HH--------------HHHhhHHHHHHhccccc
Q 011884 165 SAVDILVATPGRL-----MDHINA-TRGFTLEHLCYLVVDETDRLL-RE--------------AYQAWLPTVLQLTRSDN 223 (475)
Q Consensus 165 ~~~~Iii~Tp~~l-----~~~l~~-~~~~~~~~~~~lVvDE~H~l~-~~--------------~~~~~i~~i~~~~~~~~ 223 (475)
..++|+++|...+ .+.+.. ....-...+.+.||||+++++ +. .....+..+...+....
T Consensus 166 Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~ 245 (764)
T PRK12326 166 YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLREGK 245 (764)
T ss_pred HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcCcCC
Confidence 3579999998643 333321 112234568899999999854 11 12223333444333211
Q ss_pred cccccc--------------------ccccc-ccc-----------cccchhhhc-------ccc-----------ccCC
Q 011884 224 ENRFSD--------------------ASTFL-PSA-----------FGSLKTIRR-------CGV-----------ERGF 253 (475)
Q Consensus 224 ~~~~~~--------------------~~~~~-~~~-----------~~~~~~~~~-------~~~-----------~~~~ 253 (475)
...... ...+. ... ......+.+ .+. -.+.
T Consensus 246 dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~gr 325 (764)
T PRK12326 246 DYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQ 325 (764)
T ss_pred cEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCC
Confidence 110000 00000 000 000000000 000 0000
Q ss_pred CC-----------------------------CCc-cchheeeeceeeccCccccccccccCceeeecCccccCCchhhhh
Q 011884 254 KD-----------------------------KPY-PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES 303 (475)
Q Consensus 254 ~~-----------------------------~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (475)
.+ ..+ ...+...+|+|......++...+ +..++......+........
T Consensus 326 rwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY--~l~Vv~IPtnkp~~R~d~~d 403 (764)
T PRK12326 326 RWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFY--DLGVSVIPPNKPNIREDEAD 403 (764)
T ss_pred ccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHh--CCcEEECCCCCCceeecCCC
Confidence 00 000 01125566666644333332211 11122222222222111111
Q ss_pred hhhhccCCCcHHHHHHHHHh--cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcC-Ce
Q 011884 304 YKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KI 380 (475)
Q Consensus 304 ~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g-~~ 380 (475)
....+...|...+.+-+.+ ..+.++||.+.|++..+.+++.|.+.+ ++...+++.... ++..+-+= .| .-
T Consensus 404 -~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~g---I~h~vLNAk~~~--~EA~IIa~-AG~~g 476 (764)
T PRK12326 404 -RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAG---VPAVVLNAKNDA--EEARIIAE-AGKYG 476 (764)
T ss_pred -ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCC---CcceeeccCchH--hHHHHHHh-cCCCC
Confidence 1222233344444444432 378899999999999999999999876 777778876443 33222222 24 35
Q ss_pred EEEEEcCCcccCCCCC---------------CCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechh
Q 011884 381 QVLVSSDAMTRGMDVE---------------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 437 (475)
Q Consensus 381 ~iLv~t~~~~~GiDip---------------~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 437 (475)
.|.|||+|.++|.||. +--+||....+.|.---.|..||+||.|.+|.+.+|++-+|
T Consensus 477 aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 477 AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 7999999999999987 12268888889999999999999999999999988876433
No 126
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=8.2e-19 Score=182.80 Aligned_cols=147 Identities=18% Similarity=0.248 Sum_probs=101.6
Q ss_pred CCCcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcC-CeEEEEEc
Q 011884 310 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSS 386 (475)
Q Consensus 310 ~~~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g-~~~iLv~t 386 (475)
...|+..+.+-+... .+.++||.+.|++..+.+++.|+..+ ++.-+++.... +++..+-+ ..| .-.|.|||
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~g---i~h~VLNAk~~--~~EA~IIa-~AG~~GaVTIAT 504 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEG---IEHKVLNAKYH--EKEAEIIA-QAGRPGALTIAT 504 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcC---CcHHHhccccc--hhHHHHHH-cCCCCCcEEEec
Confidence 344555555555432 68899999999999999999999877 55555665533 33333333 335 45899999
Q ss_pred CCcccCCCCC-------------------------------------CCcEEEEecCCCCHHHHHHHhhhccccCCCCcE
Q 011884 387 DAMTRGMDVE-------------------------------------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 429 (475)
Q Consensus 387 ~~~~~GiDip-------------------------------------~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~ 429 (475)
+|.++|.||. +--+||....+.|.---.|..||+||.|.+|.+
T Consensus 505 NMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 505 NMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred cCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999999995 223688888899999999999999999999999
Q ss_pred EEEeec-hhHH------HHHHHHHHhcCCCCCccCCChhhhh
Q 011884 430 FTLLHK-DEVK------RFKKLLQKADNDSCPIHSIPSSLIE 464 (475)
Q Consensus 430 ~~~~~~-~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~ 464 (475)
.+|++- +++. .+..+++.+... +-.++.+.++.
T Consensus 585 ~f~lSlED~Lmr~fg~~~~~~~~~~~~~~--e~~~I~~~~i~ 624 (913)
T PRK13103 585 RFYLSLEDSLMRIFASDRVKNFMKALGMQ--SGEAIEHRMVT 624 (913)
T ss_pred EEEEEcCcHHHHhhCcHHHHHHHHHcCCC--CCCccccHHHH
Confidence 888754 3332 344455544321 12445555443
No 127
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.80 E-value=9.7e-20 Score=190.21 Aligned_cols=372 Identities=20% Similarity=0.201 Sum_probs=232.1
Q ss_pred CcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccc
Q 011884 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 83 (475)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 83 (475)
+.+|.+|.+-++.++..+.+++++|+...+|-|||+..+. .+..+.....-.+..|+++|--.+..+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~-fl~~l~~~~~~~gpflvvvplst~~~W------------ 435 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTIT-FLSYLFHSLQIHGPFLVVVPLSTITAW------------ 435 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHH-HHHHHHHhhhccCCeEEEeehhhhHHH------------
Confidence 5799999999999999999999999999999999976544 444444333233469999997665433
Q ss_pred cccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhh
Q 011884 84 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 163 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (475)
.+.+..|. ++++.+++|......-+++++..-... .-
T Consensus 436 ----------------------------~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~------------~~ 472 (1373)
T KOG0384|consen 436 ----------------------------EREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSN------------TK 472 (1373)
T ss_pred ----------------------------HHHHHHHh---hhceeeeecchhHHHHHHHHHheecCC------------cc
Confidence 33344444 789999999988888877765422110 00
Q ss_pred hcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHH----------------------HhhHHHHHHhccc
Q 011884 164 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY----------------------QAWLPTVLQLTRS 221 (475)
Q Consensus 164 ~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~----------------------~~~i~~i~~~~~~ 221 (475)
.-.+++++||++.++.--...+. -.+.+++|||||+|-+..- .+.++.+..++..
T Consensus 473 ~lkf~~lltTye~~LkDk~~L~~---i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~F 549 (1373)
T KOG0384|consen 473 KLKFNALLTTYEIVLKDKAELSK---IPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHF 549 (1373)
T ss_pred ccccceeehhhHHHhccHhhhcc---CCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcc
Confidence 11468999999988653332222 2367899999999754321 1234444545544
Q ss_pred cccccccccccccccc-------cccchhhhccccccCC-CC-------CCc-------cchheeeeceeeccCccccc-
Q 011884 222 DNENRFSDASTFLPSA-------FGSLKTIRRCGVERGF-KD-------KPY-------PRLVKMVLSATLTQDPNKLA- 278 (475)
Q Consensus 222 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~-------~~~-------~~~~~i~~SaT~~~~~~~~~- 278 (475)
.-+..|..+..+.... ........++.+.+.+ ++ ... ..+|.-++-+-+..++..+.
T Consensus 550 l~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtK 629 (1373)
T KOG0384|consen 550 LMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTK 629 (1373)
T ss_pred cCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhc
Confidence 4455555555444443 1111111111111111 10 000 01111111111211211111
Q ss_pred ----------------cccccCceeeecCccccCCchh----hhhhhhhccCCCcHHHHHHHHHhc--CCCeEEEEcCCh
Q 011884 279 ----------------QLDLHHPLFLTTGETRYKLPER----LESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSV 336 (475)
Q Consensus 279 ----------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~s~ 336 (475)
+..+++|..+.-.......... -..+-....+..|...|..+|-.. .|++||||..=+
T Consensus 630 G~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMV 709 (1373)
T KOG0384|consen 630 GAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMV 709 (1373)
T ss_pred cCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHH
Confidence 2233444333221111000000 001111222333444444444322 578999999999
Q ss_pred HHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcC---CeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHH
Q 011884 337 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG---KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 413 (475)
Q Consensus 337 ~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g---~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~ 413 (475)
.....++++|..++ ++.--+.|....+-|++.|+.|..- ...+|+||.+.+.|||+..++.||+++..++|..-
T Consensus 710 RmLDIL~eYL~~r~---ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQND 786 (1373)
T KOG0384|consen 710 RMLDILAEYLSLRG---YPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQND 786 (1373)
T ss_pred HHHHHHHHHHHHcC---CcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchH
Confidence 99999999999877 8889999999999999999999863 47899999999999999999999999999999999
Q ss_pred HHHhhhccccCCCCcEEEE--eechh
Q 011884 414 IHRAGRTARAGQLGRCFTL--LHKDE 437 (475)
Q Consensus 414 ~Q~~GR~~R~~~~g~~~~~--~~~~~ 437 (475)
+|+..||.|.|+...+-+| ++++.
T Consensus 787 LQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 787 LQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred HHHHHHHHhhcccceEEEEEEecCCc
Confidence 9999999999988776554 55543
No 128
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=6.5e-19 Score=176.57 Aligned_cols=321 Identities=17% Similarity=0.191 Sum_probs=193.6
Q ss_pred hhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHh-hhhcc-ccceEEEcccHHHHHHHhhhhhcccccccccccchhhh
Q 011884 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRAVR-CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSI 93 (475)
Q Consensus 16 ~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~-~~~~~-~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 93 (475)
.++.++..+.-++|||.||||||+..--.++.+=. ..+.. +.-+=|.-|+|.-|--|+++
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkR------------------ 324 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKR------------------ 324 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHH------------------
Confidence 35566656777999999999999853332332211 01011 22355556999888777655
Q ss_pred HHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeC
Q 011884 94 AEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 173 (475)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T 173 (475)
++..+..++... ..-..+.++ ......|.++|
T Consensus 325 -----------------Va~EL~~~~~eV--sYqIRfd~t-----------------------------i~e~T~IkFMT 356 (1172)
T KOG0926|consen 325 -----------------VAFELGVLGSEV--SYQIRFDGT-----------------------------IGEDTSIKFMT 356 (1172)
T ss_pred -----------------HHHHhccCccce--eEEEEeccc-----------------------------cCCCceeEEec
Confidence 444444433332 222222221 22345899999
Q ss_pred chHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhhhccccccCC
Q 011884 174 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 253 (475)
Q Consensus 174 p~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (475)
.+.|++-+.+ .+.+..+++||+||||.- .-+...+-..+.++....... ..
T Consensus 357 DGVLLrEi~~--DflL~kYSvIIlDEAHER--SvnTDILiGmLSRiV~LR~k~-------------------------~k 407 (1172)
T KOG0926|consen 357 DGVLLREIEN--DFLLTKYSVIILDEAHER--SVNTDILIGMLSRIVPLRQKY-------------------------YK 407 (1172)
T ss_pred chHHHHHHHH--hHhhhhceeEEechhhhc--cchHHHHHHHHHHHHHHHHHH-------------------------hh
Confidence 9999887775 578899999999999963 222333333333222111000 00
Q ss_pred CCCCccchheeeeceeeccC-ccccccccccCceeeecCccccCCchhhhhhhhhccCCC---cHHHHHHHHHhcCCCeE
Q 011884 254 KDKPYPRLVKMVLSATLTQD-PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQSLGEEKC 329 (475)
Q Consensus 254 ~~~~~~~~~~i~~SaT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~ 329 (475)
.......++.|++|||+.-. +.+...++-.-|.++.+.... .|..++... ..+..+ .+.....+.+..+.|.+
T Consensus 408 e~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQ--fPVsIHF~k-rT~~DYi~eAfrKtc~IH~kLP~G~I 484 (1172)
T KOG0926|consen 408 EQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQ--FPVSIHFNK-RTPDDYIAEAFRKTCKIHKKLPPGGI 484 (1172)
T ss_pred hhcccCceeEEEEeeeEEecccccCceecCCCCceeeeeccc--CceEEEecc-CCCchHHHHHHHHHHHHhhcCCCCcE
Confidence 01111234789999999632 333344444444444444332 222221111 111111 12333444455689999
Q ss_pred EEEcCChHHHHHHHHHHhhcCC--C-------------------------------------------------------
Q 011884 330 IVFTSSVESTHRLCTLLNHFGE--L------------------------------------------------------- 352 (475)
Q Consensus 330 lvf~~s~~~~~~l~~~l~~~~~--~------------------------------------------------------- 352 (475)
|||+....+..++++.|++..+ .
T Consensus 485 LVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~ 564 (1172)
T KOG0926|consen 485 LVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASL 564 (1172)
T ss_pred EEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhh
Confidence 9999999999999999987532 0
Q ss_pred ---------------------------------------ceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCC
Q 011884 353 ---------------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 393 (475)
Q Consensus 353 ---------------------------------------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~Gi 393 (475)
..-+..+++-++.....++...--+|..-.+|+|++.+..+
T Consensus 565 raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSL 644 (1172)
T KOG0926|consen 565 RAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSL 644 (1172)
T ss_pred hhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccc
Confidence 01144555555566565666655667777999999999999
Q ss_pred CCCCCcEEEEecCC------------------CCHHHHHHHhhhccccCCCCcEEEEeec
Q 011884 394 DVEGVNNVVNYDKP------------------AYIKTYIHRAGRTARAGQLGRCFTLLHK 435 (475)
Q Consensus 394 Dip~~~~Vv~~~~~------------------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 435 (475)
-||++..||..+.. -|...--||+|||||.| +|+|+-++..
T Consensus 645 TIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 645 TIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred ccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 99999999986632 23445569999999999 9999999765
No 129
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=2.6e-18 Score=169.64 Aligned_cols=301 Identities=20% Similarity=0.256 Sum_probs=187.6
Q ss_pred hcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhc-cccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHH
Q 011884 17 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAE 95 (475)
Q Consensus 17 ~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~-~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 95 (475)
++..+..++-++|.+.||||||.... +.+...+. ++.-+-+.-|.|.-|.-++++
T Consensus 364 ll~~ir~n~vvvivgETGSGKTTQl~----QyL~edGY~~~GmIGcTQPRRvAAiSVAkr-------------------- 419 (1042)
T KOG0924|consen 364 LLSVIRENQVVVIVGETGSGKTTQLA----QYLYEDGYADNGMIGCTQPRRVAAISVAKR-------------------- 419 (1042)
T ss_pred HHHHHhhCcEEEEEecCCCCchhhhH----HHHHhcccccCCeeeecCchHHHHHHHHHH--------------------
Confidence 44555567889999999999998532 23333332 233344445999888775433
Q ss_pred HhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCch
Q 011884 96 MCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 175 (475)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~ 175 (475)
..+.+...+|- -+|..-..++. -...+.|-+.|.+
T Consensus 420 ------------------Va~EM~~~lG~----~VGYsIRFEdv-----------------------T~~~T~IkymTDG 454 (1042)
T KOG0924|consen 420 ------------------VAEEMGVTLGD----TVGYSIRFEDV-----------------------TSEDTKIKYMTDG 454 (1042)
T ss_pred ------------------HHHHhCCcccc----ccceEEEeeec-----------------------CCCceeEEEeccc
Confidence 22333322222 22221111111 0123478999999
Q ss_pred HHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhhhccccccCCCC
Q 011884 176 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 255 (475)
Q Consensus 176 ~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (475)
.|++-.- ....+..+++||+||||.-. -....+..++.......
T Consensus 455 iLLrEsL--~d~~L~kYSviImDEAHERs--lNtDilfGllk~~larR-------------------------------- 498 (1042)
T KOG0924|consen 455 ILLRESL--KDRDLDKYSVIIMDEAHERS--LNTDILFGLLKKVLARR-------------------------------- 498 (1042)
T ss_pred hHHHHHh--hhhhhhheeEEEechhhhcc--cchHHHHHHHHHHHHhh--------------------------------
Confidence 8866332 23567889999999999741 11222333332221100
Q ss_pred CCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHHHHhc-------CCCe
Q 011884 256 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-------GEEK 328 (475)
Q Consensus 256 ~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~ 328 (475)
..++.|++|||+. ...+...+-+.|.+ ........+ . .........+.+...+.+. ..|.
T Consensus 499 ---rdlKliVtSATm~--a~kf~nfFgn~p~f-~IpGRTyPV--~-----~~~~k~p~eDYVeaavkq~v~Ihl~~~~Gd 565 (1042)
T KOG0924|consen 499 ---RDLKLIVTSATMD--AQKFSNFFGNCPQF-TIPGRTYPV--E-----IMYTKTPVEDYVEAAVKQAVQIHLSGPPGD 565 (1042)
T ss_pred ---ccceEEEeecccc--HHHHHHHhCCCcee-eecCCccce--E-----EEeccCchHHHHHHHHhhheEeeccCCCCC
Confidence 1346899999984 45555544433332 222211111 1 1222233333444444322 5678
Q ss_pred EEEEcCChHHHHHHHHHHhhc----C---CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEE
Q 011884 329 CIVFTSSVESTHRLCTLLNHF----G---ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 401 (475)
Q Consensus 329 ~lvf~~s~~~~~~l~~~l~~~----~---~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~V 401 (475)
+|||.+..++.+-.+..+++. . ..+..+..+++.++.+-..++...-..|..+++|+|++.+..+-+|++..|
T Consensus 566 ilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yV 645 (1042)
T KOG0924|consen 566 ILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYV 645 (1042)
T ss_pred EEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEE
Confidence 999999988777766666553 1 136789999999999888888777777889999999999999999999999
Q ss_pred EEecC------------------CCCHHHHHHHhhhccccCCCCcEEEEeech
Q 011884 402 VNYDK------------------PAYIKTYIHRAGRTARAGQLGRCFTLLHKD 436 (475)
Q Consensus 402 v~~~~------------------~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 436 (475)
|..+. |-|...--||.|||||.+ +|.|+-+++..
T Consensus 646 ID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 646 IDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred EecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 97653 456677789999999999 99999998763
No 130
>COG4889 Predicted helicase [General function prediction only]
Probab=99.78 E-value=6.5e-19 Score=177.87 Aligned_cols=97 Identities=19% Similarity=0.424 Sum_probs=75.2
Q ss_pred eEEEEcCChHHHHHHHHHHhhc------------CCCceeeEEeccccCHHHHHHHHHH---HHcCCeEEEEEcCCcccC
Q 011884 328 KCIVFTSSVESTHRLCTLLNHF------------GELRIKIKEYSGLQRQSVRSKTLKA---FREGKIQVLVSSDAMTRG 392 (475)
Q Consensus 328 ~~lvf~~s~~~~~~l~~~l~~~------------~~~~~~~~~~~g~~~~~~r~~~~~~---f~~g~~~iLv~t~~~~~G 392 (475)
+.+-||.+.+...+++..+.+. ....+.+.+..|.|...+|.+.++. |...+.+||--..+++||
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 5677787777666666554331 1223455566788999999665543 344678999999999999
Q ss_pred CCCCCCcEEEEecCCCCHHHHHHHhhhccccC
Q 011884 393 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 424 (475)
Q Consensus 393 iDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~ 424 (475)
||+|.++.||++++..|....+|.+||+.|..
T Consensus 542 VDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 542 VDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred CCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999964
No 131
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.78 E-value=4.6e-18 Score=177.86 Aligned_cols=314 Identities=19% Similarity=0.226 Sum_probs=202.2
Q ss_pred hcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHH
Q 011884 17 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEM 96 (475)
Q Consensus 17 ~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (475)
+++.+.+++.++|+|.||+|||+...-.+++.....+ +.-++++.-|+|--|--++++.
T Consensus 181 Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-~~~~IicTQPRRIsAIsvAeRV-------------------- 239 (924)
T KOG0920|consen 181 ILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-AACNIICTQPRRISAISVAERV-------------------- 239 (924)
T ss_pred HHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-CCCeEEecCCchHHHHHHHHHH--------------------
Confidence 5666667899999999999999987777887766554 4446777779988777755442
Q ss_pred hhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchH
Q 011884 97 CVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 176 (475)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~ 176 (475)
..+ .+...+..++--.+-.+ .......+++||.+.
T Consensus 240 --------------a~E----R~~~~g~~VGYqvrl~~---------------------------~~s~~t~L~fcTtGv 274 (924)
T KOG0920|consen 240 --------------AKE----RGESLGEEVGYQVRLES---------------------------KRSRETRLLFCTTGV 274 (924)
T ss_pred --------------HHH----hccccCCeeeEEEeeec---------------------------ccCCceeEEEecHHH
Confidence 111 22222322222111111 111235799999999
Q ss_pred HHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhhhccccccCCCCC
Q 011884 177 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 256 (475)
Q Consensus 177 l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (475)
|++.+.. ...+..+.++|+||+|.-.- ....+-.++..+-.
T Consensus 275 LLr~L~~--~~~l~~vthiivDEVHER~i--~~DflLi~lk~lL~----------------------------------- 315 (924)
T KOG0920|consen 275 LLRRLQS--DPTLSGVTHIIVDEVHERSI--NTDFLLILLKDLLP----------------------------------- 315 (924)
T ss_pred HHHHhcc--CcccccCceeeeeeEEEccC--CcccHHHHHHHHhh-----------------------------------
Confidence 9998876 45678999999999996311 11112222221111
Q ss_pred CccchheeeeceeeccCccccccccccCceeeecCccccCCch-----hhh----------hh------------hhhcc
Q 011884 257 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPE-----RLE----------SY------------KLICE 309 (475)
Q Consensus 257 ~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------~~------------~~~~~ 309 (475)
..|.++.|++|||+.. +.+...+...|.+ .+......+.. .+. +. .....
T Consensus 316 ~~p~LkvILMSAT~da--e~fs~YF~~~pvi-~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (924)
T KOG0920|consen 316 RNPDLKVILMSATLDA--ELFSDYFGGCPVI-TIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWE 392 (924)
T ss_pred hCCCceEEEeeeecch--HHHHHHhCCCceE-eecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcc
Confidence 0145688999999863 2222222222222 21111111000 000 00 00111
Q ss_pred CCCcHHHHHHHHHh----cCCCeEEEEcCChHHHHHHHHHHhhcCC----CceeeEEeccccCHHHHHHHHHHHHcCCeE
Q 011884 310 SKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 381 (475)
Q Consensus 310 ~~~~~~~l~~~l~~----~~~~~~lvf~~s~~~~~~l~~~l~~~~~----~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 381 (475)
++.....+.+++.. ...+.+|||.|+.++...+.+.|..... ...-+..+|+.|+..+.+.+...--.|..+
T Consensus 393 ~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RK 472 (924)
T KOG0920|consen 393 PEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRK 472 (924)
T ss_pred ccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcch
Confidence 12233444444432 2578999999999999999999976432 235678899999999999999988889999
Q ss_pred EEEEcCCcccCCCCCCCcEEEEecCC------------------CCHHHHHHHhhhccccCCCCcEEEEeechhHH
Q 011884 382 VLVSSDAMTRGMDVEGVNNVVNYDKP------------------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 439 (475)
Q Consensus 382 iLv~t~~~~~GiDip~~~~Vv~~~~~------------------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 439 (475)
|+++|++.+.+|-|+++-.||..+.. -|...-.||.||+||.- +|.|+.++++...+
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~-~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR-PGICYHLYTRSRYE 547 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc-CCeeEEeechhhhh
Confidence 99999999999999999989875532 34556779999999987 99999999875553
No 132
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.76 E-value=3.3e-17 Score=170.24 Aligned_cols=130 Identities=26% Similarity=0.308 Sum_probs=93.9
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 81 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 81 (475)
|. .|++.|. +..+.-.+.-+.++.||.|||+++.+|++-... .|..|.|++++..||.+
T Consensus 74 G~-r~ydvQl------ig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL----~G~~VhVvT~NdyLA~R---------- 132 (870)
T CHL00122 74 GL-RHFDVQL------IGGLVLNDGKIAEMKTGEGKTLVATLPAYLNAL----TGKGVHIVTVNDYLAKR---------- 132 (870)
T ss_pred CC-CCCchHh------hhhHhhcCCccccccCCCCchHHHHHHHHHHHh----cCCceEEEeCCHHHHHH----------
Confidence 44 5778884 444444566799999999999999988754333 24469999999999999
Q ss_pred cccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHH
Q 011884 82 KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (475)
.++.+..+..++|+++++..++.+..+...
T Consensus 133 -----------------------------D~e~m~pvy~~LGLsvg~i~~~~~~~err~--------------------- 162 (870)
T CHL00122 133 -----------------------------DQEWMGQIYRFLGLTVGLIQEGMSSEERKK--------------------- 162 (870)
T ss_pred -----------------------------HHHHHHHHHHHcCCceeeeCCCCChHHHHH---------------------
Confidence 677778888889999999988776555433
Q ss_pred hhhcCCcEEEeCch-----HHHHHhhcC-CCcccCCccEEEEcchHHHH
Q 011884 162 ELQSAVDILVATPG-----RLMDHINAT-RGFTLEHLCYLVVDETDRLL 204 (475)
Q Consensus 162 ~~~~~~~Iii~Tp~-----~l~~~l~~~-~~~~~~~~~~lVvDE~H~l~ 204 (475)
...++|+++|.. .|.+.+... ...-...+.++||||+|+++
T Consensus 163 --aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 163 --NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred --hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 345799999985 344433211 12234668899999999854
No 133
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.75 E-value=8.6e-17 Score=165.68 Aligned_cols=80 Identities=19% Similarity=0.263 Sum_probs=72.8
Q ss_pred ceeeEEeccccCHHHHHHHHHHHHcCC---eEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcE
Q 011884 353 RIKIKEYSGLQRQSVRSKTLKAFREGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 429 (475)
Q Consensus 353 ~~~~~~~~g~~~~~~r~~~~~~f~~g~---~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~ 429 (475)
+..+..+||.|+..+|+.+++.|.+.. .-+|.++-++++||++-+++.||++|+.++|..-.|+++|+-|.||...|
T Consensus 619 g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v 698 (776)
T KOG0390|consen 619 GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPV 698 (776)
T ss_pred CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceE
Confidence 588999999999999999999999743 33567778999999999999999999999999999999999999998888
Q ss_pred EEE
Q 011884 430 FTL 432 (475)
Q Consensus 430 ~~~ 432 (475)
++|
T Consensus 699 ~iY 701 (776)
T KOG0390|consen 699 YIY 701 (776)
T ss_pred EEE
Confidence 877
No 134
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=5.5e-17 Score=167.58 Aligned_cols=120 Identities=21% Similarity=0.241 Sum_probs=92.1
Q ss_pred CCCcHHHHHHHHHh--cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcC-CeEEEEEc
Q 011884 310 SKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSS 386 (475)
Q Consensus 310 ~~~~~~~l~~~l~~--~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g-~~~iLv~t 386 (475)
...|+..+.+.+.. ..+.++||.|.|++..+.+++.|.+.+ ++.-++++... +++..+-. ..| .-.|.|||
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~g---i~h~vLNAk~~--e~EA~IIa-~AG~~GaVTIAT 481 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEAN---IPHTVLNAKQN--AREAEIIA-KAGQKGAITIAT 481 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC---CCceeecccch--hhHHHHHH-hCCCCCeEEEec
Confidence 33455555554442 268899999999999999999999876 77777777543 34433333 345 46899999
Q ss_pred CCcccCCCCCCCc--------EEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeec
Q 011884 387 DAMTRGMDVEGVN--------NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 435 (475)
Q Consensus 387 ~~~~~GiDip~~~--------~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 435 (475)
+|.++|.||.--. +||....+.|.---.|..||+||.|.+|.+.+|++-
T Consensus 482 NMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSL 538 (925)
T PRK12903 482 NMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISL 538 (925)
T ss_pred ccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEec
Confidence 9999999998211 788888888888888999999999999999888754
No 135
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=3.1e-17 Score=165.10 Aligned_cols=119 Identities=20% Similarity=0.248 Sum_probs=101.0
Q ss_pred CcHHHHHHHHHh--cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCC--eEEEEEcC
Q 011884 312 LKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSD 387 (475)
Q Consensus 312 ~~~~~l~~~l~~--~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~--~~iLv~t~ 387 (475)
.|...+..++.. ..+.++|+|..++.....+...|.. ..++..+-+.|..+...|..++++|.++. .=+|++|.
T Consensus 530 GKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~--~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTr 607 (923)
T KOG0387|consen 530 GKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRR--AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTR 607 (923)
T ss_pred chHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHh--cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEec
Confidence 455555555542 2466999999999999998888885 23489999999999999999999999875 34668889
Q ss_pred CcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEE
Q 011884 388 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 432 (475)
Q Consensus 388 ~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 432 (475)
+.+.|+|+.+++.||++++.++|..-.|+.-|+-|.|+...+++|
T Consensus 608 vGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 608 VGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred ccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 999999999999999999999999999999999999988777666
No 136
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=1.3e-15 Score=158.22 Aligned_cols=128 Identities=29% Similarity=0.310 Sum_probs=94.2
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
.|++.|. +..+.-++.-+.++.||-|||+++.+|++-.... |..|-|++++.-||..
T Consensus 85 r~ydVQl------iGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~----GkgVhVVTvNdYLA~R------------- 141 (939)
T PRK12902 85 RHFDVQL------IGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT----GKGVHVVTVNDYLARR------------- 141 (939)
T ss_pred CcchhHH------HhhhhhcCCceeeecCCCChhHHHHHHHHHHhhc----CCCeEEEeCCHHHHHh-------------
Confidence 5677773 4444445566999999999999999887654433 4469999999999998
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
-++.+..+..++|+++++..++....+.. ..
T Consensus 142 --------------------------Dae~m~~vy~~LGLtvg~i~~~~~~~err-----------------------~a 172 (939)
T PRK12902 142 --------------------------DAEWMGQVHRFLGLSVGLIQQDMSPEERK-----------------------KN 172 (939)
T ss_pred --------------------------HHHHHHHHHHHhCCeEEEECCCCChHHHH-----------------------Hh
Confidence 77778888889999999998765544332 34
Q ss_pred cCCcEEEeCchHH-----HHHhhc-CCCcccCCccEEEEcchHHHH
Q 011884 165 SAVDILVATPGRL-----MDHINA-TRGFTLEHLCYLVVDETDRLL 204 (475)
Q Consensus 165 ~~~~Iii~Tp~~l-----~~~l~~-~~~~~~~~~~~lVvDE~H~l~ 204 (475)
..++|+++|+..| .+.+.. ....-...+.+.||||+|+++
T Consensus 173 Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 173 YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred cCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 5689999999765 444432 222335678899999999743
No 137
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.71 E-value=7.7e-17 Score=135.46 Aligned_cols=118 Identities=39% Similarity=0.580 Sum_probs=106.8
Q ss_pred CcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCc
Q 011884 312 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 389 (475)
Q Consensus 312 ~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~ 389 (475)
.+...+.+.+... .++++|||+++.+.++.+++.|.+.. .++..+||+++..+|..+++.|.++...+|++|+++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPG---IKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcC---CcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChh
Confidence 5666777777655 37899999999999999999998744 789999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEE
Q 011884 390 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 432 (475)
Q Consensus 390 ~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 432 (475)
++|+|+|++++||+++.+.+...+.|++||++|.|+.|.++++
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999987777653
No 138
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.70 E-value=4.1e-16 Score=140.61 Aligned_cols=185 Identities=34% Similarity=0.522 Sum_probs=125.2
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+++..|+++|.+++..+.... +.+++.+|||+|||.++..+++..+.... ..++++++|++.++.|+.+++
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~~~~~--~~~~l~~~p~~~~~~~~~~~~---- 74 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEALKRGK--GKRVLVLVPTRELAEQWAEEL---- 74 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHhcccC--CCcEEEEeCCHHHHHHHHHHH----
Confidence 467789999999988776522 89999999999999988888887766542 357999999999999965543
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
...............++.......
T Consensus 75 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 98 (201)
T smart00487 75 -----------------------------------KKLGPSLGLKVVGLYGGDSKREQL--------------------- 98 (201)
T ss_pred -----------------------------------HHHhccCCeEEEEEeCCcchHHHH---------------------
Confidence 333322222222233332222221
Q ss_pred HhhhcCC-cEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccc
Q 011884 161 QELQSAV-DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 239 (475)
Q Consensus 161 ~~~~~~~-~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 239 (475)
..+..+. +++++|++.+.+.+.... .....++++|+||+|++....+...+..++..+..
T Consensus 99 ~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~------------------ 159 (201)
T smart00487 99 RKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPK------------------ 159 (201)
T ss_pred HHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCc------------------
Confidence 1222334 899999999999887744 45677899999999999653445555555554411
Q ss_pred cchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeee
Q 011884 240 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 289 (475)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~ 289 (475)
..+.+++|||++................+.
T Consensus 160 --------------------~~~~v~~saT~~~~~~~~~~~~~~~~~~~~ 189 (201)
T smart00487 160 --------------------NVQLLLLSATPPEEIENLLELFLNDPVFID 189 (201)
T ss_pred --------------------cceEEEEecCCchhHHHHHHHhcCCCEEEe
Confidence 236799999998777776665555444433
No 139
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.69 E-value=1.7e-15 Score=158.33 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=104.9
Q ss_pred CCCcHHHHHHHHHhc----------------CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHH
Q 011884 310 SKLKPLYLVALLQSL----------------GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 373 (475)
Q Consensus 310 ~~~~~~~l~~~l~~~----------------~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~ 373 (475)
...|...|.+++.+- .++++||||.-+..++.+.+.|.+...+.+....+.|.-+...|.++.+
T Consensus 1308 hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~ 1387 (1549)
T KOG0392|consen 1308 HSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVE 1387 (1549)
T ss_pred hchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHH
Confidence 345677777777543 3459999999999999999888775555566668899999999999999
Q ss_pred HHHcC-CeEEE-EEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEE--eec
Q 011884 374 AFREG-KIQVL-VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL--LHK 435 (475)
Q Consensus 374 ~f~~g-~~~iL-v~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~--~~~ 435 (475)
+|.++ .+++| ++|.+.+.|+|+.+++.||+++-.++|..-.|+.-||.|.|+...+-++ +++
T Consensus 1388 ~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItr 1453 (1549)
T KOG0392|consen 1388 RFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITR 1453 (1549)
T ss_pred HhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhc
Confidence 99998 57776 6778999999999999999999999999999999999999977665444 444
No 140
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.68 E-value=2.5e-16 Score=158.42 Aligned_cols=123 Identities=20% Similarity=0.248 Sum_probs=103.0
Q ss_pred cHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCC--eEEEEEcCC
Q 011884 313 KPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSDA 388 (475)
Q Consensus 313 ~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~--~~iLv~t~~ 388 (475)
|...|..++... .+.++|+|..--.....+-..|...+ ++..-+.|.....+|+.++..|...+ .-+|++|.+
T Consensus 762 K~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~---~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKA 838 (941)
T KOG0389|consen 762 KCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLG---YKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKA 838 (941)
T ss_pred hHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcC---ceEEeecCCccchHHHHHHHhhccCCceEEEEEeecc
Confidence 445556655433 56899999998888888888888776 89999999999999999999998765 457899999
Q ss_pred cccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEE--eechhH
Q 011884 389 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL--LHKDEV 438 (475)
Q Consensus 389 ~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~--~~~~~~ 438 (475)
.+.|||+.++++||+++...+|..-.|+--||.|.|+...+.++ +++...
T Consensus 839 GG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 839 GGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred CcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcH
Confidence 99999999999999999999999999999999999987665443 555433
No 141
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.67 E-value=1.2e-14 Score=142.44 Aligned_cols=261 Identities=16% Similarity=0.171 Sum_probs=191.4
Q ss_pred CCcEEEeCchHHHHHhhcCC----C-cccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccc-cccccccccccccccc
Q 011884 166 AVDILVATPGRLMDHINATR----G-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN-ENRFSDASTFLPSAFG 239 (475)
Q Consensus 166 ~~~Iii~Tp~~l~~~l~~~~----~-~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~-~~~~~~~~~~~~~~~~ 239 (475)
+.||||++|=.|...+.... . --++++.++|+|.+|.+ .++.+.++..++..++... ..+.++.....+++..
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l-~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVL-LMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHH-HHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 57999999999988887421 1 23899999999999977 5788899999998887655 3556888888888888
Q ss_pred cchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCc-eeeecCcc------ccCCchhhhhhhhhcc---
Q 011884 240 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGET------RYKLPERLESYKLICE--- 309 (475)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~--- 309 (475)
+...+.+ |.+++|+...++...+....+.+. ..+..... ...+...+++.+...+
T Consensus 210 g~a~~~R---------------Qtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 210 GQAKYYR---------------QTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred Ccchhee---------------EeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 7766665 889999998887776655533321 11111100 0112222333322211
Q ss_pred ----CCCcHHH----HHHHHH-hcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCe
Q 011884 310 ----SKLKPLY----LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 380 (475)
Q Consensus 310 ----~~~~~~~----l~~~l~-~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 380 (475)
+..+... +...+. ....+++|||+||+-+--++.+.|++.. +..+.+|...+..+..+....|.+|+.
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~---~sF~~i~EYts~~~isRAR~~F~~G~~ 351 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKEN---ISFVQISEYTSNSDISRARSQFFHGRK 351 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcC---CeEEEecccCCHHHHHHHHHHHHcCCc
Confidence 2222222 222223 4456799999999999999999999655 888999999999999999999999999
Q ss_pred EEEEEcCCcc--cCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCC------CCcEEEEeechhHHHHHHHH
Q 011884 381 QVLVSSDAMT--RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ------LGRCFTLLHKDEVKRFKKLL 445 (475)
Q Consensus 381 ~iLv~t~~~~--~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~------~g~~~~~~~~~~~~~~~~l~ 445 (475)
++|+.|.-+- +-..+.++..||+|++|..+.-|...++-.+.... ...|.+++++-|...++++.
T Consensus 352 ~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 352 PILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred eEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 9999998644 56888999999999999999988888865544332 57899999999998888774
No 142
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.66 E-value=1.5e-15 Score=159.03 Aligned_cols=342 Identities=18% Similarity=0.255 Sum_probs=219.7
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
..+|.|.+++....+ .++++++.+|+|||||+++.++++. . ....++++++|..+.+..+
T Consensus 1143 ~~n~iqtqVf~~~y~---~nd~v~vga~~gsgkt~~ae~a~l~---~--~~~~~~vyi~p~~~i~~~~------------ 1202 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYN---TNDNVLVGAPNGSGKTACAELALLR---P--DTIGRAVYIAPLEEIADEQ------------ 1202 (1674)
T ss_pred ccCCceEEEEeeeec---ccceEEEecCCCCchhHHHHHHhcC---C--ccceEEEEecchHHHHHHH------------
Confidence 347889887665554 6788999999999999998887776 2 2456899999999988764
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
...+-.+++...|..++.++|..+..-.. .
T Consensus 1203 --------------------------~~~w~~~f~~~~G~~~~~l~ge~s~~lkl------------------------~ 1232 (1674)
T KOG0951|consen 1203 --------------------------YRDWEKKFSKLLGLRIVKLTGETSLDLKL------------------------L 1232 (1674)
T ss_pred --------------------------HHHHHHhhccccCceEEecCCccccchHH------------------------h
Confidence 33334455566789999999887654332 2
Q ss_pred cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhh
Q 011884 165 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 244 (475)
Q Consensus 165 ~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (475)
...+|+|+||+++-. +. ..+.+++.|+||.|.+. ..+++..+-++. ++..
T Consensus 1233 ~~~~vii~tpe~~d~-lq-----~iQ~v~l~i~d~lh~ig-g~~g~v~evi~S-~r~i---------------------- 1282 (1674)
T KOG0951|consen 1233 QKGQVIISTPEQWDL-LQ-----SIQQVDLFIVDELHLIG-GVYGAVYEVICS-MRYI---------------------- 1282 (1674)
T ss_pred hhcceEEechhHHHH-Hh-----hhhhcceEeeehhhhhc-ccCCceEEEEee-HHHH----------------------
Confidence 245899999999643 32 45778999999999875 333332222221 1000
Q ss_pred hccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhcc-------CCCcHHHH
Q 011884 245 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYL 317 (475)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l 317 (475)
..+....++.+.+|..+.+.. ++ .+.....++.........|..++....... ...+.. .
T Consensus 1283 ---------a~q~~k~ir~v~ls~~lana~-d~--ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~-~ 1349 (1674)
T KOG0951|consen 1283 ---------ASQLEKKIRVVALSSSLANAR-DL--IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPT-Y 1349 (1674)
T ss_pred ---------HHHHHhheeEEEeehhhccch-hh--ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhH-H
Confidence 000001335677777765432 22 333333344444444334433322111111 111111 1
Q ss_pred HHHHHh-cCCCeEEEEcCChHHHHHHHHHHhhcCC-------------------CceeeEEeccccCHHHHHHHHHHHHc
Q 011884 318 VALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGE-------------------LRIKIKEYSGLQRQSVRSKTLKAFRE 377 (475)
Q Consensus 318 ~~~l~~-~~~~~~lvf~~s~~~~~~l~~~l~~~~~-------------------~~~~~~~~~g~~~~~~r~~~~~~f~~ 377 (475)
.++.+. ..+.+.+||+|++.+|..++..+-.... -..+..+-|.+++..+..-+-..|..
T Consensus 1350 ~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~ 1429 (1674)
T KOG0951|consen 1350 TAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEA 1429 (1674)
T ss_pred HHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhc
Confidence 111111 1466899999999999998865533210 01233334889999888888889999
Q ss_pred CCeEEEEEcCCcccCCCCCCCcEEEEec-----------CCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHH
Q 011884 378 GKIQVLVSSDAMTRGMDVEGVNNVVNYD-----------KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 446 (475)
Q Consensus 378 g~~~iLv~t~~~~~GiDip~~~~Vv~~~-----------~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~ 446 (475)
|.+.++|.... ..|+-... ..||.++ .+.++..+.|+.|++.| .|+|+++.+....+.+++++.
T Consensus 1430 g~i~v~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~ 1504 (1674)
T KOG0951|consen 1430 GAIQVCVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLY 1504 (1674)
T ss_pred CcEEEEEEEcc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhcc
Confidence 99999998887 77887764 4455433 23458899999999988 679999999999999998865
Q ss_pred HhcCCCCCccCCChhhhhhhhcccc
Q 011884 447 KADNDSCPIHSIPSSLIESLRPVYK 471 (475)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (475)
.. .|+.+.+.-.|-+.+.
T Consensus 1505 e~-------lPves~lq~~lhd~~n 1522 (1674)
T KOG0951|consen 1505 EP-------LPVESHLQHCLHDNFN 1522 (1674)
T ss_pred Cc-------CchHHHHHHHHHhhhh
Confidence 44 6777777666655443
No 143
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.66 E-value=3.1e-16 Score=119.04 Aligned_cols=77 Identities=36% Similarity=0.627 Sum_probs=72.5
Q ss_pred HHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccC
Q 011884 345 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 424 (475)
Q Consensus 345 ~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~ 424 (475)
.|+..+ +++..+||+++..+|+.+++.|++++..+|++|+++++|+|+|++++|+++++|+|+..|.|++||++|.|
T Consensus 2 ~L~~~~---~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKG---IKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTT---SSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCC---CcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 455444 89999999999999999999999999999999999999999999999999999999999999999999975
No 144
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=1e-15 Score=146.29 Aligned_cols=297 Identities=20% Similarity=0.259 Sum_probs=181.3
Q ss_pred hcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHH
Q 011884 17 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEM 96 (475)
Q Consensus 17 ~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (475)
.++.+.+++.+++.|.||||||...--.++....... ..|...-|.|.-|.+++++.
T Consensus 55 F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~---~~v~CTQprrvaamsva~RV-------------------- 111 (699)
T KOG0925|consen 55 FLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL---TGVACTQPRRVAAMSVAQRV-------------------- 111 (699)
T ss_pred HHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc---cceeecCchHHHHHHHHHHH--------------------
Confidence 4556667899999999999999865555555554432 34777779999998865441
Q ss_pred hhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchH
Q 011884 97 CVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 176 (475)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~ 176 (475)
+...++.++--+|..-..++... +++-+-++|.++
T Consensus 112 ----------------------adEMDv~lG~EVGysIrfEdC~~-----------------------~~T~Lky~tDgm 146 (699)
T KOG0925|consen 112 ----------------------ADEMDVTLGEEVGYSIRFEDCTS-----------------------PNTLLKYCTDGM 146 (699)
T ss_pred ----------------------HHHhccccchhccccccccccCC-----------------------hhHHHHHhcchH
Confidence 12223333333443322222110 111244677777
Q ss_pred HHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhhhccccccCCCCC
Q 011884 177 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 256 (475)
Q Consensus 177 l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (475)
|++-..+ ...+..+++||+||||.-.-. ...+..+++......
T Consensus 147 LlrEams--~p~l~~y~viiLDeahERtlA--TDiLmGllk~v~~~r--------------------------------- 189 (699)
T KOG0925|consen 147 LLREAMS--DPLLGRYGVIILDEAHERTLA--TDILMGLLKEVVRNR--------------------------------- 189 (699)
T ss_pred HHHHHhh--CcccccccEEEechhhhhhHH--HHHHHHHHHHHHhhC---------------------------------
Confidence 7665544 245788999999999974211 223333333222111
Q ss_pred CccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcH-------HHHHHHHHhcCCCeE
Q 011884 257 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP-------LYLVALLQSLGEEKC 329 (475)
Q Consensus 257 ~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~l~~~~~~~~ 329 (475)
+.++.|++|+|+. ..++...+.+.|. ..+.... |..+ ...++... ..+.++......|-+
T Consensus 190 --pdLk~vvmSatl~--a~Kfq~yf~n~Pl-l~vpg~~---PvEi-----~Yt~e~erDylEaairtV~qih~~ee~GDi 256 (699)
T KOG0925|consen 190 --PDLKLVVMSATLD--AEKFQRYFGNAPL-LAVPGTH---PVEI-----FYTPEPERDYLEAAIRTVLQIHMCEEPGDI 256 (699)
T ss_pred --CCceEEEeecccc--hHHHHHHhCCCCe-eecCCCC---ceEE-----EecCCCChhHHHHHHHHHHHHHhccCCCCE
Confidence 2457899999984 3444444444443 3333211 1111 11222211 222333333367899
Q ss_pred EEEcCChHHHHHHHHHHhhcC-C-----CceeeEEeccccCHHHHHHHHHHHHc---C--CeEEEEEcCCcccCCCCCCC
Q 011884 330 IVFTSSVESTHRLCTLLNHFG-E-----LRIKIKEYSGLQRQSVRSKTLKAFRE---G--KIQVLVSSDAMTRGMDVEGV 398 (475)
Q Consensus 330 lvf~~s~~~~~~l~~~l~~~~-~-----~~~~~~~~~g~~~~~~r~~~~~~f~~---g--~~~iLv~t~~~~~GiDip~~ 398 (475)
|+|.++.++.+..|+.+.... . ...++..+| ..+.+.+.+.-.. | ..+++|+|++.+..+-++++
T Consensus 257 lvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgi 332 (699)
T KOG0925|consen 257 LVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGI 332 (699)
T ss_pred EEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccE
Confidence 999999999999998887421 1 235677777 3334444333322 1 36899999999999999999
Q ss_pred cEEEEec------------------CCCCHHHHHHHhhhccccCCCCcEEEEeech
Q 011884 399 NNVVNYD------------------KPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 436 (475)
Q Consensus 399 ~~Vv~~~------------------~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 436 (475)
.+||..+ .|.|..+-.||.||+||.. +|+|++++++.
T Consensus 333 v~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~-pGkcfrLYte~ 387 (699)
T KOG0925|consen 333 VFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRLYTEE 387 (699)
T ss_pred EEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCC-CCceEEeecHH
Confidence 9998644 3567888999999999987 99999998764
No 145
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.65 E-value=1.1e-14 Score=139.55 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=100.6
Q ss_pred cCCCcHHHHHHHHHh------cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCC-eE
Q 011884 309 ESKLKPLYLVALLQS------LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQ 381 (475)
Q Consensus 309 ~~~~~~~~l~~~l~~------~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~-~~ 381 (475)
....|.+.+.+.+.. .++.|.+||+......+.+...+.+.+ +...-+.|..++.+|....+.|+..+ ..
T Consensus 469 tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~---vg~IRIDGst~s~~R~ll~qsFQ~seev~ 545 (689)
T KOG1000|consen 469 TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRK---VGSIRIDGSTPSHRRTLLCQSFQTSEEVR 545 (689)
T ss_pred hcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcC---CCeEEecCCCCchhHHHHHHHhccccceE
Confidence 344565555555554 256799999999999999999998776 88888999999999999999999753 33
Q ss_pred E-EEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEe
Q 011884 382 V-LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 433 (475)
Q Consensus 382 i-Lv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~ 433 (475)
| +++..+.+.|+++...+.||+..+++++..++|+--|+.|.|+...+.+++
T Consensus 546 VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 546 VAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred EEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEE
Confidence 3 456677889999999999999999999999999999999999887765553
No 146
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.63 E-value=3e-16 Score=140.03 Aligned_cols=65 Identities=29% Similarity=0.304 Sum_probs=53.3
Q ss_pred cccchhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhh
Q 011884 5 SLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 76 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~ 76 (475)
+|+++|.+|+..++..+... .++++.+|||||||.+++..+..... ++++++|+..|++|+.+++
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-------~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-------KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-------EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-------ceeEecCHHHHHHHHHHHH
Confidence 68999999999999866654 88999999999999988765554332 6999999999999976665
No 147
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.62 E-value=5.8e-15 Score=143.50 Aligned_cols=279 Identities=20% Similarity=0.223 Sum_probs=177.8
Q ss_pred EEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccccc
Q 011884 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFI 106 (475)
Q Consensus 27 ~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (475)
++=+|||.||||.- +++.+..- .+.++..|-|-||..++..+.+.
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~a----ksGvycGPLrLLA~EV~~r~na~--------------------------- 238 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKSA----KSGVYCGPLRLLAHEVYDRLNAL--------------------------- 238 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhhh----ccceecchHHHHHHHHHHHhhhc---------------------------
Confidence 44599999999964 44544432 26899999999999976655443
Q ss_pred cchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHHHhhcCCC
Q 011884 107 SLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 186 (475)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~ 186 (475)
++.+.+++|.......- -...+..+-+|.++..
T Consensus 239 ----------------gipCdL~TGeE~~~~~~-----------------------~~~~a~hvScTVEM~s-------- 271 (700)
T KOG0953|consen 239 ----------------GIPCDLLTGEERRFVLD-----------------------NGNPAQHVSCTVEMVS-------- 271 (700)
T ss_pred ----------------CCCccccccceeeecCC-----------------------CCCcccceEEEEEEee--------
Confidence 67777777764321110 0123578888877651
Q ss_pred cccCCccEEEEcchHHHHHHHHH-hhHHHHHHhccccccccccccccccccccccchhhhccccccCCCCCCccchheee
Q 011884 187 FTLEHLCYLVVDETDRLLREAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 265 (475)
Q Consensus 187 ~~~~~~~~lVvDE~H~l~~~~~~-~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 265 (475)
--..+++.|+||++.+.+.+++ +|.+.++...... |-
T Consensus 272 -v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdE-----------------------------------------iH 309 (700)
T KOG0953|consen 272 -VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADE-----------------------------------------IH 309 (700)
T ss_pred -cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhh-----------------------------------------hh
Confidence 1245889999999998665553 6666666654320 11
Q ss_pred eceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHH
Q 011884 266 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 345 (475)
Q Consensus 266 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~ 345 (475)
+-+-+ ..-++.+..+... +... ..+.+....+-...+.+..-+...+.|-++| |-|+.+...+...
T Consensus 310 LCGep--svldlV~~i~k~T-----Gd~v------ev~~YeRl~pL~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~k 375 (700)
T KOG0953|consen 310 LCGEP--SVLDLVRKILKMT-----GDDV------EVREYERLSPLVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKK 375 (700)
T ss_pred ccCCc--hHHHHHHHHHhhc-----CCee------EEEeecccCcceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHH
Confidence 11110 1112222111100 0000 0000111111111223333445556666666 4468888999999
Q ss_pred HhhcCCCceeeEEeccccCHHHHHHHHHHHHc--CCeEEEEEcCCcccCCCCCCCcEEEEecCC---------CCHHHHH
Q 011884 346 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--GKIQVLVSSDAMTRGMDVEGVNNVVNYDKP---------AYIKTYI 414 (475)
Q Consensus 346 l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~--g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~---------~s~~~~~ 414 (475)
+++.+ +.++++++|+++++.|.+--..|.+ ++.+|||||+++++|+|+. ++.||++.+. -+..+..
T Consensus 376 IE~~g--~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqik 452 (700)
T KOG0953|consen 376 IEKAG--NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIK 452 (700)
T ss_pred HHHhc--CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeecccCCcccceeccHHHHH
Confidence 98876 2458999999999999999999988 7899999999999999996 8889988754 3577899
Q ss_pred HHhhhccccCC--CCcEEEEeechhHHHHHHHHH
Q 011884 415 HRAGRTARAGQ--LGRCFTLLHKDEVKRFKKLLQ 446 (475)
Q Consensus 415 Q~~GR~~R~~~--~g~~~~~~~~~~~~~~~~l~~ 446 (475)
|.+|||||.|. +...++-+..+|+..+++.++
T Consensus 453 QIAGRAGRf~s~~~~G~vTtl~~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 453 QIAGRAGRFGSKYPQGEVTTLHSEDLKLLKRILK 486 (700)
T ss_pred HHhhcccccccCCcCceEEEeeHhhHHHHHHHHh
Confidence 99999999862 233344456678888888776
No 148
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.61 E-value=1.4e-15 Score=144.65 Aligned_cols=201 Identities=16% Similarity=0.077 Sum_probs=122.9
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhc--cccceEEEcccHHHHHHHhhhhhc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~--~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
|.| .|+|.|.+.+..+...+.++.++++.||||+|||++++.+++..+...+. ++.+++++++|..+.+|...++++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 456 56999999999999999899999999999999999999999877665422 124799999999999998888877
Q ss_pred ccc-----------------------cccccccchhhhHHHhhh-ccccccccchhhHHHHHhhcccccce--------E
Q 011884 79 YCC-----------------------KNIFGLIADHSIAEMCVQ-FDSLLFISLPQVKDVFAAIAPAVGLS--------V 126 (475)
Q Consensus 79 ~~~-----------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 126 (475)
... ...++.+.-.++..+|.+ +-..+..........+..+....... .
T Consensus 84 ~~~~~~~~~~~t~sq~~q~~~el~~~~~~~~~~~l~sR~~lCin~~v~~~~~~~~~~~~~C~~l~~~~~~~~~~~~~~~~ 163 (289)
T smart00489 84 LMQKVEYESDEESEKQAQLLHELGREKPKVLGLSLTSRKNLCLNPEVRTLKQNGLVVDEVCRSLTASKARKYRYENPKVE 163 (289)
T ss_pred cccccceecccchhHHHHHHHHHhccCCCcceeEeechhhcCCChHHhhcccccchHHHHHHHHHhhccccccccccCCC
Confidence 631 222444444466669986 32222111101111122111100000 0
Q ss_pred eE-ccCCCch----------HHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHHHhhcCC-CcccCCccE
Q 011884 127 GL-AVGQSSI----------ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCY 194 (475)
Q Consensus 127 ~~-~~g~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~-~~~~~~~~~ 194 (475)
.+ +...... ..+...+.+ .......+|+...+.....++|+|+++..|++...... ...+ ...+
T Consensus 164 ~c~~~~~~~~~~~~~~~~~~~~d~e~l~~---~~~~~~~CpY~~~r~~~~~Adivi~ny~yll~~~~r~~~~~~l-~~~~ 239 (289)
T smart00489 164 RCPFYENTEFLLVRDLLPAEVYDIEDLLE---LGKRLGGCPYFASRKAIEFANVVVLPYQYLLDPKIRQALSIEL-KDSI 239 (289)
T ss_pred CCCccchhhhhhhhhhcccCCCCHHHHHH---hcccCCCChhHHHHHHhhcCCEEEECHHHHhcHHHHHHhcccc-cccE
Confidence 00 0000000 000000101 01112478999999999999999999999876542211 1233 4689
Q ss_pred EEEcchHHHHHH
Q 011884 195 LVVDETDRLLRE 206 (475)
Q Consensus 195 lVvDE~H~l~~~ 206 (475)
+||||||++.+.
T Consensus 240 lIiDEAHnL~d~ 251 (289)
T smart00489 240 VIFDEAHNLDNV 251 (289)
T ss_pred EEEeCccChHHH
Confidence 999999998643
No 149
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.61 E-value=1.4e-15 Score=144.65 Aligned_cols=201 Identities=16% Similarity=0.077 Sum_probs=122.9
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhc--cccceEEEcccHHHHHHHhhhhhc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~--~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
|.| .|+|.|.+.+..+...+.++.++++.||||+|||++++.+++..+...+. ++.+++++++|..+.+|...++++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 456 56999999999999999899999999999999999999999877665422 124799999999999998888877
Q ss_pred ccc-----------------------cccccccchhhhHHHhhh-ccccccccchhhHHHHHhhcccccce--------E
Q 011884 79 YCC-----------------------KNIFGLIADHSIAEMCVQ-FDSLLFISLPQVKDVFAAIAPAVGLS--------V 126 (475)
Q Consensus 79 ~~~-----------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 126 (475)
... ...++.+.-.++..+|.+ +-..+..........+..+....... .
T Consensus 84 ~~~~~~~~~~~t~sq~~q~~~el~~~~~~~~~~~l~sR~~lCin~~v~~~~~~~~~~~~~C~~l~~~~~~~~~~~~~~~~ 163 (289)
T smart00488 84 LMQKVEYESDEESEKQAQLLHELGREKPKVLGLSLTSRKNLCLNPEVRTLKQNGLVVDEVCRSLTASKARKYRYENPKVE 163 (289)
T ss_pred cccccceecccchhHHHHHHHHHhccCCCcceeEeechhhcCCChHHhhcccccchHHHHHHHHHhhccccccccccCCC
Confidence 631 222444444466669986 32222111101111122111100000 0
Q ss_pred eE-ccCCCch----------HHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHHHhhcCC-CcccCCccE
Q 011884 127 GL-AVGQSSI----------ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCY 194 (475)
Q Consensus 127 ~~-~~g~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~-~~~~~~~~~ 194 (475)
.+ +...... ..+...+.+ .......+|+...+.....++|+|+++..|++...... ...+ ...+
T Consensus 164 ~c~~~~~~~~~~~~~~~~~~~~d~e~l~~---~~~~~~~CpY~~~r~~~~~Adivi~ny~yll~~~~r~~~~~~l-~~~~ 239 (289)
T smart00488 164 RCPFYENTEFLLVRDLLPAEVYDIEDLLE---LGKRLGGCPYFASRKAIEFANVVVLPYQYLLDPKIRQALSIEL-KDSI 239 (289)
T ss_pred CCCccchhhhhhhhhhcccCCCCHHHHHH---hcccCCCChhHHHHHHhhcCCEEEECHHHHhcHHHHHHhcccc-cccE
Confidence 00 0000000 000000101 01112478999999999999999999999876542211 1233 4689
Q ss_pred EEEcchHHHHHH
Q 011884 195 LVVDETDRLLRE 206 (475)
Q Consensus 195 lVvDE~H~l~~~ 206 (475)
+||||||++.+.
T Consensus 240 lIiDEAHnL~d~ 251 (289)
T smart00488 240 VIFDEAHNLDNV 251 (289)
T ss_pred EEEeCccChHHH
Confidence 999999998643
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=4.4e-14 Score=148.37 Aligned_cols=133 Identities=19% Similarity=0.228 Sum_probs=97.2
Q ss_pred CcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCc
Q 011884 312 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 389 (475)
Q Consensus 312 ~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~ 389 (475)
.|+..+.+-+... .+.++||-+.|++..+.+++.|...+ ++.-++++..+. ++..+-+-.-..-.|.|||+|.
T Consensus 612 eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~g---I~H~VLNAK~h~--~EAeIVA~AG~~GaVTIATNMA 686 (1112)
T PRK12901 612 EKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRK---IPHNVLNAKLHQ--KEAEIVAEAGQPGTVTIATNMA 686 (1112)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcC---CcHHHhhccchh--hHHHHHHhcCCCCcEEEeccCc
Confidence 4444444444322 78899999999999999999999876 666666665433 3333322222245788999999
Q ss_pred ccCCCCC--------CCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeec-hhH------HHHHHHHHHhc
Q 011884 390 TRGMDVE--------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK-DEV------KRFKKLLQKAD 449 (475)
Q Consensus 390 ~~GiDip--------~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~-~~~------~~~~~l~~~~~ 449 (475)
++|.||. +--+||....+.|.---.|..||+||.|.+|.+.+|++- +++ +.+..+++++.
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLmr~Fgs~ri~~~m~~~g 761 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMG 761 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHHHhhCcHHHHHHHHHcC
Confidence 9999998 233688888999999999999999999999999888754 344 33556666654
No 151
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=2.5e-14 Score=139.18 Aligned_cols=111 Identities=20% Similarity=0.274 Sum_probs=93.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhc----CCC-ceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCc
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHF----GEL-RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 399 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~----~~~-~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~ 399 (475)
.+-++|.||+++..|+.+....++. +.. -..+..|.||-..++|.++.+..=.|+..-+++|++++.|||+.+++
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LD 603 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLD 603 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccce
Confidence 3569999999999999887665542 210 12345678999999999999999899999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeec
Q 011884 400 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 435 (475)
Q Consensus 400 ~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 435 (475)
.|++.+.|.|+..+.|.+||+||++++.-.+.+...
T Consensus 604 AVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~ 639 (1034)
T KOG4150|consen 604 AVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFL 639 (1034)
T ss_pred eEEEccCchhHHHHHHHhccccccCCCceEEEEEec
Confidence 999999999999999999999999988776666443
No 152
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.57 E-value=7.2e-14 Score=118.44 Aligned_cols=121 Identities=39% Similarity=0.653 Sum_probs=84.6
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLL 104 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (475)
+++++.+|||+|||.+++..+....... ...++++++|++.++.|+.+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~--~~~~~lv~~p~~~l~~~~~~~----------------------------- 49 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL--KGGQVLVLAPTRELANQVAER----------------------------- 49 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc--cCCCEEEEcCcHHHHHHHHHH-----------------------------
Confidence 3689999999999999888777766542 345899999999999995443
Q ss_pred cccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHHHhhcC
Q 011884 105 FISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 184 (475)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~ 184 (475)
+..+... +..+....+........ .......+|+++|++.+...+...
T Consensus 50 ----------~~~~~~~-~~~~~~~~~~~~~~~~~---------------------~~~~~~~~i~i~t~~~~~~~~~~~ 97 (144)
T cd00046 50 ----------LKELFGE-GIKVGYLIGGTSIKQQE---------------------KLLSGKTDIVVGTPGRLLDELERL 97 (144)
T ss_pred ----------HHHHhhC-CcEEEEEecCcchhHHH---------------------HHhcCCCCEEEECcHHHHHHHHcC
Confidence 3333332 45566666554333222 122345799999999998777653
Q ss_pred CCcccCCccEEEEcchHHHHHHHHH
Q 011884 185 RGFTLEHLCYLVVDETDRLLREAYQ 209 (475)
Q Consensus 185 ~~~~~~~~~~lVvDE~H~l~~~~~~ 209 (475)
. .....++++|+||+|.+......
T Consensus 98 ~-~~~~~~~~iiiDE~h~~~~~~~~ 121 (144)
T cd00046 98 K-LSLKKLDLLILDEAHRLLNQGFG 121 (144)
T ss_pred C-cchhcCCEEEEeCHHHHhhcchH
Confidence 3 33567889999999998655433
No 153
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.52 E-value=5.9e-14 Score=107.34 Aligned_cols=81 Identities=43% Similarity=0.709 Sum_probs=74.7
Q ss_pred HHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhc
Q 011884 341 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 420 (475)
Q Consensus 341 ~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~ 420 (475)
.+++.|+..+ ..+..+||+++..+|..+++.|.++...+|++|+++++|+|+|+++.|++++++.+...+.|++||+
T Consensus 2 ~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELG---IKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCC---CeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 3556666654 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 011884 421 ARAG 424 (475)
Q Consensus 421 ~R~~ 424 (475)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9975
No 154
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.48 E-value=1.7e-12 Score=135.63 Aligned_cols=107 Identities=17% Similarity=0.106 Sum_probs=75.4
Q ss_pred EEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccccc
Q 011884 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFI 106 (475)
Q Consensus 27 ~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (475)
.+..+.+|||||.+|+-.+.+.+.. |..+|+++|...|..|+.+.|++.
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~l~~----Gk~vLvLvPEi~lt~q~~~rl~~~--------------------------- 211 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAATLRA----GRGALVVVPDQRDVDRLEAALRAL--------------------------- 211 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHc----CCeEEEEecchhhHHHHHHHHHHH---------------------------
Confidence 4445557999999998877666654 346999999999999965544332
Q ss_pred cchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHHHhhcCCC
Q 011884 107 SLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 186 (475)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~ 186 (475)
.. +-.+..++++.+..+....|.. .....+.|+|+| ++.-.
T Consensus 212 ------------f~--~~~v~~lhS~l~~~~R~~~w~~-----------------~~~G~~~IViGt--------RSAvF 252 (665)
T PRK14873 212 ------------LG--AGDVAVLSAGLGPADRYRRWLA-----------------VLRGQARVVVGT--------RSAVF 252 (665)
T ss_pred ------------cC--CCcEEEECCCCCHHHHHHHHHH-----------------HhCCCCcEEEEc--------ceeEE
Confidence 21 2457888888877766554432 122237899999 33334
Q ss_pred cccCCccEEEEcchHHH
Q 011884 187 FTLEHLCYLVVDETDRL 203 (475)
Q Consensus 187 ~~~~~~~~lVvDE~H~l 203 (475)
.++.++++|||||-|.-
T Consensus 253 aP~~~LgLIIvdEEhd~ 269 (665)
T PRK14873 253 APVEDLGLVAIWDDGDD 269 (665)
T ss_pred eccCCCCEEEEEcCCch
Confidence 67889999999999954
No 155
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=4.9e-13 Score=129.42 Aligned_cols=260 Identities=19% Similarity=0.191 Sum_probs=174.5
Q ss_pred CCcEEEeCchHHHHHhhcCCC-----cccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccc-ccccccccccccccc
Q 011884 166 AVDILVATPGRLMDHINATRG-----FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE-NRFSDASTFLPSAFG 239 (475)
Q Consensus 166 ~~~Iii~Tp~~l~~~l~~~~~-----~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~-~~~~~~~~~~~~~~~ 239 (475)
..+|+||+|-.|...+.+... -.++++.++|||.+|.++ .+.++++..++..+..... ....+......++..
T Consensus 385 ~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEhl~~ifdHLn~~P~k~h~~DfSRVR~wyL~ 463 (698)
T KOG2340|consen 385 KSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEHLLHIFDHLNLQPSKQHDVDFSRVRMWYLD 463 (698)
T ss_pred ccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHHHHHHHHHhhcCcccccCCChhheehheec
Confidence 579999999999888874322 227889999999999874 6667788888887775443 467788888888888
Q ss_pred cchhhhccccccCCCCCCccchheeeeceeeccCccccccccccC--------ceee--ecCccccCCchhhhh---hhh
Q 011884 240 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH--------PLFL--TTGETRYKLPERLES---YKL 306 (475)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~--------~~~~--~~~~~~~~~~~~~~~---~~~ 306 (475)
....+.+ |.+++|+--.+.+..+....+.+ +... ........+++..+. ...
T Consensus 464 ~qsr~~r---------------Qtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si 528 (698)
T KOG2340|consen 464 GQSRYFR---------------QTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSI 528 (698)
T ss_pred cHHHHHH---------------HHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCc
Confidence 7777666 67777766555444333222221 1100 111111112222111 111
Q ss_pred hccCCCcHHHHHHHHH-hc---CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEE
Q 011884 307 ICESKLKPLYLVALLQ-SL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 382 (475)
Q Consensus 307 ~~~~~~~~~~l~~~l~-~~---~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~i 382 (475)
...+..++......+. +. ....+||+.|++-+--++.+++++.. +....+|.-.+...-.+..+-|-.|...+
T Consensus 529 ~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~---i~F~~i~EYssk~~vsRAR~lF~qgr~~v 605 (698)
T KOG2340|consen 529 IETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEE---ISFVMINEYSSKSKVSRARELFFQGRKSV 605 (698)
T ss_pred ccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhh---cchHHHhhhhhHhhhhHHHHHHHhcCceE
Confidence 1122334444333332 11 24578999999999999999999876 77777887777777777788899999999
Q ss_pred EEEcCCcc--cCCCCCCCcEEEEecCCCCHHHHH---HHhhhccccCC----CCcEEEEeechhHHHHHHH
Q 011884 383 LVSSDAMT--RGMDVEGVNNVVNYDKPAYIKTYI---HRAGRTARAGQ----LGRCFTLLHKDEVKRFKKL 444 (475)
Q Consensus 383 Lv~t~~~~--~GiDip~~~~Vv~~~~~~s~~~~~---Q~~GR~~R~~~----~g~~~~~~~~~~~~~~~~l 444 (475)
|+.|.-+. +-.++.++..||+|.+|.+|.-|. -+.+|..-.|+ .-.|.+++++.|.-.+..+
T Consensus 606 lLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 606 LLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred EEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 99998654 568999999999999999987655 45566544331 2467888888887666654
No 156
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.47 E-value=3.5e-12 Score=134.94 Aligned_cols=110 Identities=14% Similarity=0.219 Sum_probs=77.7
Q ss_pred EEEEcCChHHHHHHHHHHhhcCC---CceeeEEeccccCHHHHHHHHHHH----------------------Hc----CC
Q 011884 329 CIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAF----------------------RE----GK 379 (475)
Q Consensus 329 ~lvf~~s~~~~~~l~~~l~~~~~---~~~~~~~~~g~~~~~~r~~~~~~f----------------------~~----g~ 379 (475)
.+|-+.+.+.+-.+++.|-.... ..+.+.+||+......|..+.+.. .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 37777888888888887766532 346788999999877777766543 11 35
Q ss_pred eEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCC--CcEEEEeechhHHHH
Q 011884 380 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRF 441 (475)
Q Consensus 380 ~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~ 441 (475)
..|+|+|++++.|+|+. .+.++. -+.+...++|++||+.|.+.. +..-+++...+.+.+
T Consensus 839 ~~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~~R~~~~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRVNRHRLEKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred CeEEEEeeeEEEEeccc-CCeeee--ccCcHHHHHHHhhcccccccCCCCCCcEEEeHhHHHHh
Confidence 68999999999999986 454433 334589999999999998743 233344445555555
No 157
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.44 E-value=1e-12 Score=135.84 Aligned_cols=122 Identities=19% Similarity=0.189 Sum_probs=98.6
Q ss_pred CCcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCC---eEEEEE
Q 011884 311 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK---IQVLVS 385 (475)
Q Consensus 311 ~~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~---~~iLv~ 385 (475)
..|+..|..++-.. .++++|.|+.-..-...+..+|.-.. ++-.-+.|....++|...++.|..-. ..+|++
T Consensus 709 sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~---~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Flls 785 (1157)
T KOG0386|consen 709 SGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIRE---YKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLS 785 (1157)
T ss_pred ccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhh---hheeeecCCcchhhHHHHHHHhcCCCCceeeeeee
Confidence 34555555555433 57899999876665555566665443 78888999999999999999998743 568899
Q ss_pred cCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeec
Q 011884 386 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 435 (475)
Q Consensus 386 t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 435 (475)
|...+.|+|+..++.||+++..+++....|+--|+.|.|+...+.++...
T Consensus 786 tragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 786 TRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred ecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 99999999999999999999999999999999999999988877777443
No 158
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=99.41 E-value=4.4e-11 Score=119.71 Aligned_cols=122 Identities=20% Similarity=0.205 Sum_probs=81.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCCC----ceeeEEeccccCHHHHHHHHHHHHc----CCeEEE--EEcCCcccCCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGEL----RIKIKEYSGLQRQSVRSKTLKAFRE----GKIQVL--VSSDAMTRGMD 394 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~~----~~~~~~~~g~~~~~~r~~~~~~f~~----g~~~iL--v~t~~~~~GiD 394 (475)
-++.+++|+||++....+.+.+++.+.. +.+..++-...+ -+.+++.|.. |.-.+| |.-+-++||||
T Consensus 628 VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGIN 704 (821)
T KOG1133|consen 628 VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGIN 704 (821)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccc
Confidence 4589999999999999999999876532 233344443333 4466777764 444566 45578999999
Q ss_pred CCC--CcEEEEecCCCC--------------------------------HHHHHHHhhhccccCCCCcEEEEeec----h
Q 011884 395 VEG--VNNVVNYDKPAY--------------------------------IKTYIHRAGRTARAGQLGRCFTLLHK----D 436 (475)
Q Consensus 395 ip~--~~~Vv~~~~~~s--------------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~~----~ 436 (475)
+.+ ++.||++++|.. +....|.+|||.|+.++=.++.++|. .
T Consensus 705 F~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~RY~~p 784 (821)
T KOG1133|consen 705 FSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKRYARP 784 (821)
T ss_pred cccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhhhcCc
Confidence 997 778888887611 12455999999999877666666654 2
Q ss_pred hHHHHHHHHHHhc
Q 011884 437 EVKRFKKLLQKAD 449 (475)
Q Consensus 437 ~~~~~~~l~~~~~ 449 (475)
...++..++++.-
T Consensus 785 ~~RKLp~WI~~~v 797 (821)
T KOG1133|consen 785 LSRKLPKWIRKRV 797 (821)
T ss_pred hhhhccHHHHhHh
Confidence 2334445554443
No 159
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.33 E-value=7.9e-11 Score=117.90 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=92.9
Q ss_pred CcHHHHHHHHHhc---CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHc--CCeEEE-EE
Q 011884 312 LKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--GKIQVL-VS 385 (475)
Q Consensus 312 ~~~~~l~~~l~~~---~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~--g~~~iL-v~ 385 (475)
.|...+.+.++.. ...+++|...=.....-+...++..+ .....+||.....+|+.+++.|.. |..+|+ ++
T Consensus 729 ~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g---~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlS 805 (901)
T KOG4439|consen 729 CKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGG---HIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLS 805 (901)
T ss_pred hHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCC---eeeeeecCccchhHHHHHHHHHHhccCCceEEEEE
Confidence 3444444444433 56688777666666777777887666 788899999999999999999976 335555 55
Q ss_pred cCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEE
Q 011884 386 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 432 (475)
Q Consensus 386 t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 432 (475)
-...+.|+|+-+.++++++++.+++..-.|+.-|.-|.|+...+++.
T Consensus 806 LtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 806 LTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred EccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 56788999999999999999999999999999999999987766554
No 160
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.33 E-value=5.7e-11 Score=124.20 Aligned_cols=117 Identities=22% Similarity=0.280 Sum_probs=98.7
Q ss_pred cHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCC--eEEEEEcCC
Q 011884 313 KPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSDA 388 (475)
Q Consensus 313 ~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~--~~iLv~t~~ 388 (475)
|...|.-++++. .++++|||+.-....+-+-..|..++ +--.-+.|..+.++|+.++++|...+ .++|++|..
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHg---ylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHG---YLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcc---eEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 455555555543 57899999988888887778887766 77778899999999999999998754 689999999
Q ss_pred cccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEE
Q 011884 389 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 432 (475)
Q Consensus 389 ~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 432 (475)
.+.|||+.+.+.||+|+..+++.--.|+--|+.|.|+...+.+|
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIY 1381 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 1381 (1958)
T ss_pred CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEE
Confidence 99999999999999999999999999999999998876666555
No 161
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.33 E-value=7.3e-11 Score=117.98 Aligned_cols=118 Identities=18% Similarity=0.211 Sum_probs=98.5
Q ss_pred CcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCC-eEEEEEcCC
Q 011884 312 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQVLVSSDA 388 (475)
Q Consensus 312 ~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~-~~iLv~t~~ 388 (475)
.|...|..++... .+.++|+|+.--.....+.++|...+ ++..-+.|.....+|..++.+|+... .-+|++|.+
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~---Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRA 1104 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRG---YTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRA 1104 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhc---cceEEecCcchhhHHHHHHhhccCCceEEEEEeccc
Confidence 3444455554433 57899999988888888888888776 88899999999999999999999865 456799999
Q ss_pred cccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEE
Q 011884 389 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 432 (475)
Q Consensus 389 ~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 432 (475)
.+.|||+..++.||+|+..++++.-.|+.-|+.|.|+...+.++
T Consensus 1105 GGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1105 GGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred CcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeee
Confidence 99999999999999999999999999999999999976554333
No 162
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.30 E-value=3e-11 Score=125.65 Aligned_cols=121 Identities=20% Similarity=0.192 Sum_probs=86.0
Q ss_pred CCCcHHHHHHHHH--hcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC
Q 011884 310 SKLKPLYLVALLQ--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 387 (475)
Q Consensus 310 ~~~~~~~l~~~l~--~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~ 387 (475)
...|+..+.+.+. ...++++||-+.+++..+.+.+.|.+.+ ++...+....+ +++..+-...-..-.+-++|+
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~---i~h~VLNAk~h--~~EA~Iia~AG~~gaVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAG---IPHNVLNAKNH--AREAEIIAQAGQPGAVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcC---CCceeeccccH--HHHHHHHhhcCCCCccccccc
Confidence 3345544444443 2278899999999999999999999877 66666666554 455445455433457889999
Q ss_pred CcccCCCCCCCc-----------EEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeec
Q 011884 388 AMTRGMDVEGVN-----------NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 435 (475)
Q Consensus 388 ~~~~GiDip~~~-----------~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 435 (475)
|.++|-||.--. .||-..-..|.---.|..||+||.|.+|.+.+|++-
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSl 544 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 544 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhh
Confidence 999999987211 244444555666667999999999988988877653
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.29 E-value=3.8e-10 Score=116.86 Aligned_cols=111 Identities=17% Similarity=0.279 Sum_probs=78.1
Q ss_pred HHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCC
Q 011884 316 YLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 394 (475)
Q Consensus 316 ~l~~~l~~~-~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiD 394 (475)
+...+.... .+.++-||++|...++.+++...... .++.+++|..+..+ ++.+ ++++|++-|+++..|++
T Consensus 271 F~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~---~~Vl~l~s~~~~~d----v~~W--~~~~VviYT~~itvG~S 341 (824)
T PF02399_consen 271 FFSELLARLNAGKNICVFSSTVSFAEIVARFCARFT---KKVLVLNSTDKLED----VESW--KKYDVVIYTPVITVGLS 341 (824)
T ss_pred HHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcC---CeEEEEcCCCCccc----cccc--cceeEEEEeceEEEEec
Confidence 333333333 35677889999999999999888765 78888888665542 2333 57999999999999999
Q ss_pred CCCCcE--EEEecCC----CCHHHHHHHhhhccccCCCCcEEEEeech
Q 011884 395 VEGVNN--VVNYDKP----AYIKTYIHRAGRTARAGQLGRCFTLLHKD 436 (475)
Q Consensus 395 ip~~~~--Vv~~~~~----~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 436 (475)
+-...+ |..|-.| .+..+..|++||+-... +...+++++.-
T Consensus 342 f~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 342 FEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred cchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 975432 4444222 34668899999964444 77888887754
No 164
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=99.29 E-value=2.8e-10 Score=117.06 Aligned_cols=194 Identities=16% Similarity=0.139 Sum_probs=121.4
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh-----------c-------------------
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----------V------------------- 54 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~-----------~------------------- 54 (475)
+|++.|..-+..++..+.+..+.++..|||+|||++.+...+.+..... .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 7899999999999999888899999999999999998887776653221 0
Q ss_pred --------cccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceE
Q 011884 55 --------RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSV 126 (475)
Q Consensus 55 --------~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (475)
..++++|-+-|-....|+.+|+++..=. ........+...|.+.+=.-..+.-.-.+.++.....-...+
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 1346788888888889999998887544 344455667788887521111111111333333322211111
Q ss_pred eEccCCCch-------HHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHHHhh-cCCCcccCCccEEEEc
Q 011884 127 GLAVGQSSI-------ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN-ATRGFTLEHLCYLVVD 198 (475)
Q Consensus 127 ~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~-~~~~~~~~~~~~lVvD 198 (475)
...+..... ..++..+.+-. ....-+|+-..+.+...++|+++.+..|.+-.- +....++.+ .+||||
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~G---k~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfD 254 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIG---KKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFD 254 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhC---ccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEe
Confidence 111111111 22333333322 122356788888899999999999988876543 222233322 489999
Q ss_pred chHHHH
Q 011884 199 ETDRLL 204 (475)
Q Consensus 199 E~H~l~ 204 (475)
|||++.
T Consensus 255 EAHNiE 260 (945)
T KOG1132|consen 255 EAHNIE 260 (945)
T ss_pred ccccHH
Confidence 999864
No 165
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=99.28 E-value=1.5e-10 Score=112.30 Aligned_cols=198 Identities=13% Similarity=0.060 Sum_probs=120.6
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
|.+..-+|-|.+-+..+-..+..+.+.++.+|+|+|||.+.+-.+++.-........++++.+-|..=.+....+++.+.
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l~ 91 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRLM 91 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHHH
Confidence 45667788898888887778888899999999999999876554444433332244578888888777777777766654
Q ss_pred -------c-cccccccchhhhHHHhhhccccccccchhhHHHHHhhc---------ccccceEeEccCCCch--------
Q 011884 81 -------C-KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIA---------PAVGLSVGLAVGQSSI-------- 135 (475)
Q Consensus 81 -------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~-------- 135 (475)
+ ...|..++..++.++|.+..-+-...-..+...++.+. ...++..+-++.+...
T Consensus 92 ~y~~k~~g~~~~flglglssRKNlCi~~~v~~~r~g~~VD~~Cr~ltas~vr~~~~ed~~~~~C~f~en~~~~~~~lp~g 171 (755)
T KOG1131|consen 92 DYREKHLGYPEPFLGLGLSSRKNLCIHPEVLKERNGNVVDAACRKLTASYVRAKLAEDPNVELCDFFENLEDKESLLPVG 171 (755)
T ss_pred HHHHHhcCCCCceeeeeeccccccccCHHHHHHhcCCchhHHHHHHhHHHHHHHHhcCCCcchhhHHhhhhcccccCCcc
Confidence 3 33488999999999999865433322222333332221 1112222111111110
Q ss_pred ---HHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHHHh-hcCCCcccCCccEEEEcchHHHH
Q 011884 136 ---ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI-NATRGFTLEHLCYLVVDETDRLL 204 (475)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l-~~~~~~~~~~~~~lVvDE~H~l~ 204 (475)
.++... .......+|+-+.+....-++|+|=++..|++-- -..-...++.-+++||||||++.
T Consensus 172 vy~~~dL~~------~g~~k~~CPYflaR~~I~~~nvivYsYhYllDPkIa~~VSkels~~svVvFDEAHNID 238 (755)
T KOG1131|consen 172 VYTLEDLKE------YGEKKGWCPYFLARRMIPFANVIVYSYHYLLDPKIAELVSKELSKESVVVFDEAHNID 238 (755)
T ss_pred cccHHHHHH------hhhcCCcChHHHHHHhhhcccEEEEehhhhcChHHHHHHHHhhCcCcEEEeccccccc
Confidence 011111 0112234567777777788999999998875421 00011346677899999999754
No 166
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.22 E-value=1.4e-10 Score=128.51 Aligned_cols=118 Identities=21% Similarity=0.214 Sum_probs=100.6
Q ss_pred CcHHHHHHHH-H--hcCCC--eEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcC--CeEEEE
Q 011884 312 LKPLYLVALL-Q--SLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLV 384 (475)
Q Consensus 312 ~~~~~l~~~l-~--~~~~~--~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g--~~~iLv 384 (475)
.|...+.+++ . ...+. ++++|++.......+...++..+ .....++|.++..+|...++.|.++ ..-+++
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~---~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~ll 768 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALG---IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLL 768 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcC---CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEE
Confidence 4455555555 2 22455 89999999999999999999876 7889999999999999999999986 456778
Q ss_pred EcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEE
Q 011884 385 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 432 (475)
Q Consensus 385 ~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 432 (475)
++.+.+.|+|+...+.|+++++.+++....|+..|+.|.|+...+.++
T Consensus 769 s~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 769 SLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred EecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 888999999999999999999999999999999999999987776555
No 167
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.21 E-value=1.4e-09 Score=105.04 Aligned_cols=120 Identities=20% Similarity=0.185 Sum_probs=93.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCC-eEE-EEEcCCcccCCCCCCCcEEE
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQV-LVSSDAMTRGMDVEGVNNVV 402 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~-~~i-Lv~t~~~~~GiDip~~~~Vv 402 (475)
..-+.|||...-...+.+.-.|.+.+ +.++-+.|+|+...|...++.|++.- ..| |++-.+.+..+|+...++|+
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaG---fscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVF 713 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAG---FSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVF 713 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccC---ceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeE
Confidence 34588999988888888888888766 89999999999999999999999863 444 45556777889999999999
Q ss_pred EecCCCCHHHHHHHhhhccccCCCC--cEEEEeec-hhHHHHHHHHHH
Q 011884 403 NYDKPAYIKTYIHRAGRTARAGQLG--RCFTLLHK-DEVKRFKKLLQK 447 (475)
Q Consensus 403 ~~~~~~s~~~~~Q~~GR~~R~~~~g--~~~~~~~~-~~~~~~~~l~~~ 447 (475)
++++.+++..-.|.--|..|.|+.. +++.|+-. .-.+++-++-++
T Consensus 714 mmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeK 761 (791)
T KOG1002|consen 714 MMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEK 761 (791)
T ss_pred eecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHH
Confidence 9999999999999999999998653 33444333 233344444333
No 168
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.15 E-value=1.8e-09 Score=111.35 Aligned_cols=120 Identities=20% Similarity=0.208 Sum_probs=98.3
Q ss_pred cHHHHHHHHHh--cCCCeEEEEcCChHHHHHHHHHHhhcCCC-------------------ceeeEEeccccCHHHHHHH
Q 011884 313 KPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGEL-------------------RIKIKEYSGLQRQSVRSKT 371 (475)
Q Consensus 313 ~~~~l~~~l~~--~~~~~~lvf~~s~~~~~~l~~~l~~~~~~-------------------~~~~~~~~g~~~~~~r~~~ 371 (475)
|...|.++|.. ..+.+.|||..|...+..+-..|...... +..-..+.|.....+|...
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 44556666642 35789999999999999888888653211 2345566788889999999
Q ss_pred HHHHHcC----CeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEE
Q 011884 372 LKAFREG----KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 432 (475)
Q Consensus 372 ~~~f~~g----~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 432 (475)
...|.+- -...||+|.+.+.|||+-.++.||+++..++|.--.|.+=|+-|.|+..-|++|
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 9999873 246889999999999999999999999999999999999999999988888887
No 169
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.13 E-value=2.4e-09 Score=117.17 Aligned_cols=84 Identities=21% Similarity=0.306 Sum_probs=56.3
Q ss_pred HHHHHHHH--HcCCeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCC--CcEEEEeechhHHHHHH
Q 011884 368 RSKTLKAF--REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKK 443 (475)
Q Consensus 368 r~~~~~~f--~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~ 443 (475)
+......| .+...++||.++|+-.|+|.|.+. .+.++.|.---.++|++-|++|.-.. ..+.++.-.+-.+.+++
T Consensus 580 ~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~-TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~gl~e~l~~ 658 (962)
T COG0610 580 KKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLN-TLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRGLKEALKK 658 (962)
T ss_pred HhhhhhhhcCcCCCCCEEEEEccccccCCccccc-eEEeccccccchHHHHHHHhccCCCCCCCCcEEEECcchHHHHHH
Confidence 33444443 334689999999999999999665 55778777778999999999994321 23333333335555666
Q ss_pred HHHHhcCCC
Q 011884 444 LLQKADNDS 452 (475)
Q Consensus 444 l~~~~~~~~ 452 (475)
.++.+....
T Consensus 659 Al~~Y~~~~ 667 (962)
T COG0610 659 ALKLYSNEG 667 (962)
T ss_pred HHHHhhccc
Confidence 655555444
No 170
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.13 E-value=5.7e-10 Score=91.98 Aligned_cols=108 Identities=19% Similarity=0.111 Sum_probs=64.6
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccc
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDS 102 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (475)
.|+--++-..+|+|||.-.+.-++..... ++.++|+|.|||.+++.+.+.+++.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~---~~~rvLvL~PTRvva~em~~aL~~~----------------------- 56 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK---RRLRVLVLAPTRVVAEEMYEALKGL----------------------- 56 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH---TT--EEEEESSHHHHHHHHHHTTTS-----------------------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH---ccCeEEEecccHHHHHHHHHHHhcC-----------------------
Confidence 35556789999999998654444443333 4568999999999999976654332
Q ss_pred cccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHHHhh
Q 011884 103 LLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 182 (475)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~ 182 (475)
.+++..-.... ....+.-|-++|+.++..++.
T Consensus 57 --------------------~~~~~t~~~~~----------------------------~~~g~~~i~vMc~at~~~~~~ 88 (148)
T PF07652_consen 57 --------------------PVRFHTNARMR----------------------------THFGSSIIDVMCHATYGHFLL 88 (148)
T ss_dssp --------------------SEEEESTTSS--------------------------------SSSSEEEEEHHHHHHHHH
T ss_pred --------------------CcccCceeeec----------------------------cccCCCcccccccHHHHHHhc
Confidence 12211111100 001123689999999888776
Q ss_pred cCCCcccCCccEEEEcchHHHHHH
Q 011884 183 ATRGFTLEHLCYLVVDETDRLLRE 206 (475)
Q Consensus 183 ~~~~~~~~~~~~lVvDE~H~l~~~ 206 (475)
+. ....++++||+||+|.....
T Consensus 89 ~p--~~~~~yd~II~DEcH~~Dp~ 110 (148)
T PF07652_consen 89 NP--CRLKNYDVIIMDECHFTDPT 110 (148)
T ss_dssp TS--SCTTS-SEEEECTTT--SHH
T ss_pred Cc--ccccCccEEEEeccccCCHH
Confidence 53 34678999999999976433
No 171
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.00 E-value=3.6e-10 Score=109.01 Aligned_cols=130 Identities=20% Similarity=0.152 Sum_probs=74.2
Q ss_pred hhhhhhhhhcCCC---------CCCCcEEEECCCCCchhHHhHHHHHHHHhhhhcc--ccceEEEcccHHHHHHHhhhhh
Q 011884 9 VQVAVWQETIGPG---------LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPTRDLALQVNSARC 77 (475)
Q Consensus 9 ~Q~~a~~~~~~~~---------~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~--~~~vlil~Pt~~L~~q~~~~~~ 77 (475)
+|.+++..++... ...+.++++..+|+|||..++..+. .+...... ..++||+||. .+..||..++
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~- 77 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEI- 77 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHH-
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhh-
Confidence 4666666655543 4457899999999999987766544 33332111 1249999999 8888965554
Q ss_pred cccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCch
Q 011884 78 KYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 157 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (475)
..+......++..+.|........
T Consensus 78 --------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~------------------ 101 (299)
T PF00176_consen 78 --------------------------------------EKWFDPDSLRVIIYDGDSERRRLS------------------ 101 (299)
T ss_dssp --------------------------------------HHHSGT-TS-EEEESSSCHHHHTT------------------
T ss_pred --------------------------------------cccccccccccccccccccccccc------------------
Confidence 444433345666666655111110
Q ss_pred hHHHhhhcCCcEEEeCchHHH-----HHhhcCCCcccCCccEEEEcchHHH
Q 011884 158 DVLQELQSAVDILVATPGRLM-----DHINATRGFTLEHLCYLVVDETDRL 203 (475)
Q Consensus 158 ~~~~~~~~~~~Iii~Tp~~l~-----~~l~~~~~~~~~~~~~lVvDE~H~l 203 (475)
.......+++|+|++.+. ..... +...++++||+||+|.+
T Consensus 102 ---~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 102 ---KNQLPKYDVVITTYETLRKARKKKDKED---LKQIKWDRVIVDEAHRL 146 (299)
T ss_dssp ---SSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSEEEEEEETTGGGG
T ss_pred ---ccccccceeeeccccccccccccccccc---cccccceeEEEeccccc
Confidence 112234689999999987 11111 22234899999999988
No 172
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.95 E-value=2.7e-09 Score=93.30 Aligned_cols=109 Identities=20% Similarity=0.266 Sum_probs=75.1
Q ss_pred cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC--CcccCCCCCC--Cc
Q 011884 324 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD--AMTRGMDVEG--VN 399 (475)
Q Consensus 324 ~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~--~~~~GiDip~--~~ 399 (475)
..++++|||++|+...+.+.+.+++.... ....++.. ...++.++++.|++++..||+++. .++||||+|+ ++
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEE-KGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E--ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhccc-ccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhh
Confidence 34689999999999999999999875411 11122222 245788999999999999999998 9999999997 77
Q ss_pred EEEEecCCC------------------------------CHHHHHHHhhhccccCCCCcEEEEeec
Q 011884 400 NVVNYDKPA------------------------------YIKTYIHRAGRTARAGQLGRCFTLLHK 435 (475)
Q Consensus 400 ~Vv~~~~~~------------------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 435 (475)
.||+.++|. ....+.|.+||+.|...+-.+++++|+
T Consensus 84 ~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 84 AVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 899988762 122455999999998866556666665
No 173
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.75 E-value=5.9e-08 Score=90.13 Aligned_cols=128 Identities=25% Similarity=0.261 Sum_probs=88.5
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
.|++.|.-+.-.+ ..|+ ++++.||=|||+++.++++-... .|..|-|++.+..||..
T Consensus 77 ~p~~vQll~~l~L----~~G~--laEm~TGEGKTli~~l~a~~~AL----~G~~V~vvT~NdyLA~R------------- 133 (266)
T PF07517_consen 77 RPYDVQLLGALAL----HKGR--LAEMKTGEGKTLIAALPAALNAL----QGKGVHVVTSNDYLAKR------------- 133 (266)
T ss_dssp ---HHHHHHHHHH----HTTS--EEEESTTSHHHHHHHHHHHHHHT----TSS-EEEEESSHHHHHH-------------
T ss_pred cccHHHHhhhhhc----ccce--eEEecCCCCcHHHHHHHHHHHHH----hcCCcEEEeccHHHhhc-------------
Confidence 6788887765433 2344 99999999999998887655443 34479999999999998
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
-.+.+..+...+|++++..+++.+.......
T Consensus 134 --------------------------D~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~----------------------- 164 (266)
T PF07517_consen 134 --------------------------DAEEMRPFYEFLGLSVGIITSDMSSEERREA----------------------- 164 (266)
T ss_dssp --------------------------HHHHHHHHHHHTT--EEEEETTTEHHHHHHH-----------------------
T ss_pred --------------------------cHHHHHHHHHHhhhccccCccccCHHHHHHH-----------------------
Confidence 6777888888899999999998775444333
Q ss_pred cCCcEEEeCchHH-HHHhhc----CCCc-ccCCccEEEEcchHHHH
Q 011884 165 SAVDILVATPGRL-MDHINA----TRGF-TLEHLCYLVVDETDRLL 204 (475)
Q Consensus 165 ~~~~Iii~Tp~~l-~~~l~~----~~~~-~~~~~~~lVvDE~H~l~ 204 (475)
..++|+++|...+ ++.++. .... ....+.++||||+|.++
T Consensus 165 Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 165 YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 2458999998766 333332 1111 14678999999999874
No 174
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.69 E-value=2e-07 Score=96.32 Aligned_cols=116 Identities=19% Similarity=0.300 Sum_probs=89.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCCC----ceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcE
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGEL----RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 400 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~ 400 (475)
-.+-+++|.+.-.....++.++.+.... .+.+...|+.....+..++.+....|..+++++|.+.+..+-+.++..
T Consensus 642 i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~ 721 (1282)
T KOG0921|consen 642 IDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVY 721 (1282)
T ss_pred CccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeE
Confidence 3467899999999999999888775322 356778898888888888888888899999999999888887777666
Q ss_pred EEEec------------------CCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHH
Q 011884 401 VVNYD------------------KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 441 (475)
Q Consensus 401 Vv~~~------------------~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~ 441 (475)
|++.+ ...|.....|+.||+||.. .|.|..+....-++.+
T Consensus 722 vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR-~G~~f~lcs~arF~~l 779 (1282)
T KOG0921|consen 722 VIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVR-PGFCFHLCSRARFEAL 779 (1282)
T ss_pred EEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceec-ccccccccHHHHHHHH
Confidence 65432 2246778999999999987 8888888765544443
No 175
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.65 E-value=1.4e-07 Score=101.02 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=55.2
Q ss_pred CeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccC--CC-----Cc--EEEE-eechhHHHHHHHHHHh
Q 011884 379 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG--QL-----GR--CFTL-LHKDEVKRFKKLLQKA 448 (475)
Q Consensus 379 ~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~--~~-----g~--~~~~-~~~~~~~~~~~l~~~~ 448 (475)
..+.|++-+++.+|.|-|++-++..+....|...-.|.+||+.|.. +. +. ...+ ++.........|.+..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999998888998899999999999999953 11 11 2233 3445556666666666
Q ss_pred cCC
Q 011884 449 DND 451 (475)
Q Consensus 449 ~~~ 451 (475)
+.+
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 554
No 176
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.62 E-value=8.8e-08 Score=88.72 Aligned_cols=69 Identities=28% Similarity=0.286 Sum_probs=48.3
Q ss_pred cccchhhhhhhhhcCCCCCCCc-EEEECCCCCchhHHhHHHHHHHHh-----hhhccccceEEEcccHHHHHHHhhhhhc
Q 011884 5 SLFPVQVAVWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQTLS-----NRAVRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~-~li~a~tGsGKT~~~~~~~~~~l~-----~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
++++.|.+|+..++. ... .+|.||+|||||.+... ++..+. .....+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 468899999887765 455 89999999999965443 444441 1124567899999999999999888777
No 177
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.55 E-value=8.5e-06 Score=83.24 Aligned_cols=107 Identities=19% Similarity=0.233 Sum_probs=88.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcCCC---------------ceeeEEeccccCHHHHHHHHHHHHcCC---eEEEEEcC
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFGEL---------------RIKIKEYSGLQRQSVRSKTLKAFREGK---IQVLVSSD 387 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~~~---------------~~~~~~~~g~~~~~~r~~~~~~f~~g~---~~iLv~t~ 387 (475)
+.++|||..+......+...+.++..+ +..-.-+.|..+..+|++.+++|.+.- .-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 558999999999888888888775321 112335677788899999999998742 35678899
Q ss_pred CcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEE
Q 011884 388 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 432 (475)
Q Consensus 388 ~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 432 (475)
....|||+-..+.+++++..+++.--.|++-|+-|-|+...|+++
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvY 843 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVY 843 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEE
Confidence 999999999989999999999999999999999999999889887
No 178
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.49 E-value=5.8e-08 Score=101.94 Aligned_cols=139 Identities=21% Similarity=0.265 Sum_probs=93.8
Q ss_pred ccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccc
Q 011884 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIF 85 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~ 85 (475)
..|.|.+.+.- ......++++-+|||+|||.++..++...+... ++.++++++|-++|+..-
T Consensus 928 fn~~q~~if~~---~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~--p~~kvvyIap~kalvker------------- 989 (1230)
T KOG0952|consen 928 FNPIQTQIFHC---LYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY--PGSKVVYIAPDKALVKER------------- 989 (1230)
T ss_pred cCCccceEEEE---EeecchhhhhcCCccCcchhHHHHHHHHHhccC--CCccEEEEcCCchhhccc-------------
Confidence 34566554322 222457889999999999999999888877665 567899999999998762
Q ss_pred cccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhc
Q 011884 86 GLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 165 (475)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (475)
...+.......|+++.-.+|+...... ...
T Consensus 990 --------------------------~~Dw~~r~~~~g~k~ie~tgd~~pd~~------------------------~v~ 1019 (1230)
T KOG0952|consen 990 --------------------------SDDWSKRDELPGIKVIELTGDVTPDVK------------------------AVR 1019 (1230)
T ss_pred --------------------------ccchhhhcccCCceeEeccCccCCChh------------------------hee
Confidence 222222222227778887777654322 113
Q ss_pred CCcEEEeCchHHHHHhhcCCC-cccCCccEEEEcchHHHHHHHHHhhHH
Q 011884 166 AVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLP 213 (475)
Q Consensus 166 ~~~Iii~Tp~~l~~~l~~~~~-~~~~~~~~lVvDE~H~l~~~~~~~~i~ 213 (475)
.++++|+||++.-...++.+. .-.++++++|+||.|.+ ..++++.++
T Consensus 1020 ~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hll-g~~rgPVle 1067 (1230)
T KOG0952|consen 1020 EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLL-GEDRGPVLE 1067 (1230)
T ss_pred cCceEEcccccccCccccccchhhhccccceeecccccc-cCCCcceEE
Confidence 568999999998776665332 33678899999999977 344444333
No 179
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.39 E-value=2e-06 Score=72.46 Aligned_cols=98 Identities=16% Similarity=0.197 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhcCCCc---eeeEEeccccCHHHHHHHHHHHHcCC-eEEEEEcCCcccCCCCCC--CcEEEEecCCC---
Q 011884 338 STHRLCTLLNHFGELR---IKIKEYSGLQRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVEG--VNNVVNYDKPA--- 408 (475)
Q Consensus 338 ~~~~l~~~l~~~~~~~---~~~~~~~g~~~~~~r~~~~~~f~~g~-~~iLv~t~~~~~GiDip~--~~~Vv~~~~~~--- 408 (475)
..+.++..+.+.+... .+..++.-+....+..++++.|++.. ..||+++..++||+|+|+ ++.||+.++|.
T Consensus 3 ~m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~ 82 (141)
T smart00492 3 YMESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYP 82 (141)
T ss_pred HHHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCC
Confidence 3455556655543211 12233444444556789999998754 379999988999999997 67788877651
Q ss_pred ----------------------------CHHHHHHHhhhccccCCCCcEEEEeec
Q 011884 409 ----------------------------YIKTYIHRAGRTARAGQLGRCFTLLHK 435 (475)
Q Consensus 409 ----------------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 435 (475)
....+.|.+||+.|...+-.+++++|.
T Consensus 83 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 83 DSPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred CCHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 123556999999998866556666654
No 180
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=98.37 E-value=1.7e-06 Score=73.04 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCe---EEEEEcCC--cccCCCCCC--CcEEEEecCCC--
Q 011884 338 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI---QVLVSSDA--MTRGMDVEG--VNNVVNYDKPA-- 408 (475)
Q Consensus 338 ~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~---~iLv~t~~--~~~GiDip~--~~~Vv~~~~~~-- 408 (475)
..+.+++.+++.........++.-+....+..++++.|++... .||+++.- ++||||+|+ ++.||+.++|.
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 4556666666543211112222222223355788999987543 68888876 999999998 67888887661
Q ss_pred -----------------------------CHHHHHHHhhhccccCCCCcEEEEeec
Q 011884 409 -----------------------------YIKTYIHRAGRTARAGQLGRCFTLLHK 435 (475)
Q Consensus 409 -----------------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 435 (475)
....+.|.+||+.|...+-.+++++|.
T Consensus 83 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 83 PDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 123456999999998866666666664
No 181
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.26 E-value=6e-05 Score=78.45 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=57.9
Q ss_pred CeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhcccc--CCCCc-----------EEEEeechhHHHHHHHH
Q 011884 379 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA--GQLGR-----------CFTLLHKDEVKRFKKLL 445 (475)
Q Consensus 379 ~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~--~~~g~-----------~~~~~~~~~~~~~~~l~ 445 (475)
..++|++-.++.+|.|-|+|=.+.-+....|..+=.|-+||+.|. ++.|. -.+++...+...++.|-
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 478999999999999999988888899999999999999999994 23333 23456667777777776
Q ss_pred HHhcCCC
Q 011884 446 QKADNDS 452 (475)
Q Consensus 446 ~~~~~~~ 452 (475)
+....++
T Consensus 563 kEI~~~s 569 (985)
T COG3587 563 KEINDES 569 (985)
T ss_pred HHHHHhh
Confidence 6665544
No 182
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.21 E-value=4.2e-06 Score=74.75 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=40.1
Q ss_pred CCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHH
Q 011884 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (475)
Q Consensus 3 ~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L 68 (475)
+...++.|..++..+. +.+-+++.||.|||||+.++..+++.+..+ .-.+++++-|..+.
T Consensus 2 I~p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g--~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEG--EYDKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTT--S-SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhC--CCcEEEEEecCCCC
Confidence 3456788988877665 467899999999999999999898888774 33478888887654
No 183
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.20 E-value=3.4e-06 Score=84.85 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=56.6
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+|+.+++..|..|+.+++. ..=.||+||+|+|||.+....+++.+.. ...+||+.+|+..-+.|+++.+-+-.
T Consensus 406 ~~lpkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~---~~~~VLvcApSNiAVDqLaeKIh~tg 478 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ---HAGPVLVCAPSNIAVDQLAEKIHKTG 478 (935)
T ss_pred CCchhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh---cCCceEEEcccchhHHHHHHHHHhcC
Confidence 3667889999999887765 6678999999999998765545554444 34579999999999999888766543
No 184
>PF13245 AAA_19: Part of AAA domain
Probab=98.19 E-value=5.3e-06 Score=61.80 Aligned_cols=53 Identities=32% Similarity=0.406 Sum_probs=39.4
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhh
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 76 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~ 76 (475)
+.-++|.||+|||||.+..-.+...+......+.++++++||+..+.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 44566799999999987766666655432222568999999999999977665
No 185
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.13 E-value=6.1e-06 Score=82.71 Aligned_cols=65 Identities=26% Similarity=0.214 Sum_probs=49.3
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhh
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 76 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~ 76 (475)
.+.+.|.+|++.+++ +..-.+|.||+|+|||.+....+.+.+.+ +.+||+.+||..-+..+.+++
T Consensus 185 ~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~----~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQ----KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHc----CCeEEEEcCchHHHHHHHHHh
Confidence 467889888776555 23568899999999999766655444432 458999999999999887764
No 186
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.06 E-value=6.2e-06 Score=74.06 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=43.3
Q ss_pred cccchhhhhhhhhcCCCCCC-CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 5 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~-~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
++++.|.+|+..++. ++ +-.++.||.|+|||++. ..+...+... +.+|++++||...+..+
T Consensus 1 ~L~~~Q~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~---g~~v~~~apT~~Aa~~L 62 (196)
T PF13604_consen 1 TLNEEQREAVRAILT---SGDRVSVLQGPAGTGKTTLL-KALAEALEAA---GKRVIGLAPTNKAAKEL 62 (196)
T ss_dssp -S-HHHHHHHHHHHH---CTCSEEEEEESTTSTHHHHH-HHHHHHHHHT---T--EEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---cCCeEEEEEECCCCCHHHHH-HHHHHHHHhC---CCeEEEECCcHHHHHHH
Confidence 368899999988765 34 45788999999999753 4455544443 45799999999988874
No 187
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.93 E-value=6.3e-05 Score=67.85 Aligned_cols=67 Identities=24% Similarity=0.324 Sum_probs=51.5
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhh
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 76 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~ 76 (475)
-.|+.|.+...++++. .++.+.+.++-+|.|||.+ ++|++..+..++ ..-|.+++| ++|.+|+++.+
T Consensus 23 liR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg--~~LvrviVp-k~Ll~q~~~~L 89 (229)
T PF12340_consen 23 LIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSV-IVPMLALALADG--SRLVRVIVP-KALLEQMRQML 89 (229)
T ss_pred eeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccch-HHHHHHHHHcCC--CcEEEEEcC-HHHHHHHHHHH
Confidence 4789999999888875 4678999999999999976 467777666553 235777778 68999975553
No 188
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.88 E-value=3.9e-05 Score=75.68 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=34.6
Q ss_pred cEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhh
Q 011884 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA 75 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~ 75 (475)
-++|.|.+|||||++++-.+.. +. ....+.++++++++..|...+.+.
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~-l~-~~~~~~~~~~l~~n~~l~~~l~~~ 50 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKE-LQ-NSEEGKKVLYLCGNHPLRNKLREQ 50 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHH-hh-ccccCCceEEEEecchHHHHHHHH
Confidence 4789999999999876554433 31 112455799999999998875544
No 189
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.88 E-value=6.2e-05 Score=80.86 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=39.2
Q ss_pred hhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHH
Q 011884 163 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 216 (475)
Q Consensus 163 ~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~ 216 (475)
++....|++.||..+.+.+-.+. ++++.+..|||||||++.+..-...|-.++
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~~r-i~~~~itgiiv~~Ahr~~~~~~eaFI~rly 56 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLTGI-IPPELITGILVLRADRIIESSQEAFILRLY 56 (814)
T ss_pred HhhcCCEEEEechhhHhHHhcCC-CCHHHccEEEEeecccccccccHHHHHHHH
Confidence 44456799999999988777644 888999999999999975443333343443
No 190
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.88 E-value=7.1e-05 Score=79.14 Aligned_cols=67 Identities=24% Similarity=0.206 Sum_probs=51.0
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
.+++.|.+|+..++. +...++|.||+|+|||.+....+.+.+ .. +.+|++++||..-+.++.+.+.+
T Consensus 157 ~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~-~~---g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLV-KR---GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHH-Hc---CCCEEEEcCcHHHHHHHHHHHHh
Confidence 468899999877544 346789999999999986655444433 32 44899999999999998887765
No 191
>PRK10536 hypothetical protein; Provisional
Probab=97.70 E-value=0.0001 Score=67.74 Aligned_cols=60 Identities=18% Similarity=0.121 Sum_probs=40.7
Q ss_pred CCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHH
Q 011884 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (475)
Q Consensus 3 ~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L 68 (475)
+...+..|..++.. +.++.-+++.||+|+|||+.+...+++.+..+ .-.++++.=|+...
T Consensus 57 i~p~n~~Q~~~l~a----l~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~--~~~kIiI~RP~v~~ 116 (262)
T PRK10536 57 ILARNEAQAHYLKA----IESKQLIFATGEAGCGKTWISAAKAAEALIHK--DVDRIIVTRPVLQA 116 (262)
T ss_pred ccCCCHHHHHHHHH----HhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC--CeeEEEEeCCCCCc
Confidence 33456667665543 33467888999999999998888777666543 23356666677654
No 192
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.59 E-value=0.00016 Score=67.73 Aligned_cols=64 Identities=20% Similarity=0.075 Sum_probs=46.5
Q ss_pred cccchhhhhhhhhcCC----CCC--CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHH
Q 011884 5 SLFPVQVAVWQETIGP----GLF--ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~----~~~--~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q 71 (475)
.++..|.+++-.+-.. +.. +.-+++-..||.||--.....+++++.++ ..+.|+++.+..|-.+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G---r~r~vwvS~s~dL~~D 106 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG---RKRAVWVSVSNDLKYD 106 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC---CCceEEEECChhhhhH
Confidence 3677788776544321 112 35689999999999987777777776654 3369999999999988
No 193
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.53 E-value=0.00016 Score=69.98 Aligned_cols=67 Identities=27% Similarity=0.191 Sum_probs=49.0
Q ss_pred ccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhc
Q 011884 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
+++-|.+++.. ...+++|.|+.|||||.+.+.-++..+...+.+..+++++++|+..+..+.+++.+
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 46778776542 46889999999999999877766666665544556899999999999997665433
No 194
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.0042 Score=62.70 Aligned_cols=45 Identities=24% Similarity=0.281 Sum_probs=30.9
Q ss_pred EECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhh
Q 011884 29 INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 76 (475)
Q Consensus 29 i~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~ 76 (475)
+.++||||||+++...+++.. ..+.+ ..|+.|....+.+.....|
T Consensus 2 f~matgsgkt~~ma~lil~~y-~kgyr--~flffvnq~nilekt~~nf 46 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECY-KKGYR--NFLFFVNQANILEKTKLNF 46 (812)
T ss_pred cccccCCChhhHHHHHHHHHH-Hhchh--hEEEEecchhHHHHHHhhc
Confidence 568999999987655555543 33333 6889998888777754444
No 195
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.39 E-value=0.0005 Score=72.07 Aligned_cols=64 Identities=20% Similarity=0.175 Sum_probs=44.0
Q ss_pred cchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhh-hccccceEEEcccHHHHHHHhhh
Q 011884 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVNSA 75 (475)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~-~~~~~~vlil~Pt~~L~~q~~~~ 75 (475)
.++|..|+..++. ++-.+|.|++|+|||++... ++..+... +.+..++++++||..-+..+.+.
T Consensus 154 ~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~-ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~ 218 (615)
T PRK10875 154 VDWQKVAAAVALT----RRISVISGGPGTGKTTTVAK-LLAALIQLADGERCRIRLAAPTGKAAARLTES 218 (615)
T ss_pred CHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHH-HHHHHHHhcCCCCcEEEEECCcHHHHHHHHHH
Confidence 4789998755433 67899999999999986533 33333321 11234688899999988885443
No 196
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.34 E-value=0.00074 Score=70.62 Aligned_cols=63 Identities=21% Similarity=0.190 Sum_probs=43.3
Q ss_pred chhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhc--cccceEEEcccHHHHHHHhhh
Q 011884 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVNSA 75 (475)
Q Consensus 8 ~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~--~~~~vlil~Pt~~L~~q~~~~ 75 (475)
.+|..|+..++. ++-++|.|++|+|||++... ++..+..... .+.++++++||-.-+..+.+.
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~-ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~ 212 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVAR-LLLALVKQSPKQGKLRIALAAPTGKAAARLAES 212 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHH-HHHHHHHhccccCCCcEEEECCcHHHHHHHHHH
Confidence 678887665544 67899999999999986433 4443432211 125799999999888775443
No 197
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.33 E-value=0.00065 Score=73.06 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=44.8
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
.+++.|.+|+..+. .++-++|.|++|+|||.+. ..++..+...+ +...+++++||..-+..+
T Consensus 323 ~l~~~Q~~Ai~~~~----~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-~~~~v~l~ApTg~AA~~L 384 (720)
T TIGR01448 323 GLSEEQKQALDTAI----QHKVVILTGGPGTGKTTIT-RAIIELAEELG-GLLPVGLAAPTGRAAKRL 384 (720)
T ss_pred CCCHHHHHHHHHHH----hCCeEEEECCCCCCHHHHH-HHHHHHHHHcC-CCceEEEEeCchHHHHHH
Confidence 68899999987764 3668999999999999754 33444444321 114688899998877664
No 198
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.21 E-value=0.0013 Score=72.26 Aligned_cols=61 Identities=10% Similarity=-0.116 Sum_probs=44.8
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
.+++-|.+|+..++. .++-+++.|+.|+|||++ +.++...+.. .+.+|+.++||-..+..+
T Consensus 346 ~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~-l~~~~~~~e~---~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 346 VLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAM-LGVAREAWEA---AGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHH-HHHHHHHHHH---cCCeEEEecCcHHHHHHH
Confidence 689999999877654 234578999999999985 3445544443 255799999998877663
No 199
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.19 E-value=0.00011 Score=76.52 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=55.7
Q ss_pred CcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHc---CCeEEEEEc
Q 011884 312 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE---GKIQVLVSS 386 (475)
Q Consensus 312 ~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~---g~~~iLv~t 386 (475)
.+...|...++.. .++++++|..-....+.+-..+...+ ....+.|..+..+|+..+.+|.. .+..+|++|
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~----~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllst 690 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG----KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLST 690 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC----cceeccCCccchhhhhhccccCCCCccceEEEeec
Confidence 3444455544433 57799999877777766666665433 56678898889999999999984 357899999
Q ss_pred CCcccC
Q 011884 387 DAMTRG 392 (475)
Q Consensus 387 ~~~~~G 392 (475)
...+.|
T Consensus 691 ra~g~g 696 (696)
T KOG0383|consen 691 RAGGLG 696 (696)
T ss_pred ccccCC
Confidence 987655
No 200
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.14 E-value=0.00055 Score=63.64 Aligned_cols=39 Identities=23% Similarity=0.058 Sum_probs=28.6
Q ss_pred hhhhhhhhhcCCCCCC--CcEEEECCCCCchhHHhHHHHHH
Q 011884 9 VQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQ 47 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~~li~a~tGsGKT~~~~~~~~~ 47 (475)
+|..+++.+.+.+..+ -+.|+.||+|+|||.++++.+.+
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~ 80 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARA 80 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHH
Confidence 5766666666655553 67999999999999877664443
No 201
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.12 E-value=0.0019 Score=68.62 Aligned_cols=63 Identities=19% Similarity=0.129 Sum_probs=46.2
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhh
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNS 74 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~ 74 (475)
.++..|++|+.+++. ..+..+|.|=+|+|||.+... +++.+.. .+.+||+.+=|-.-+..+.-
T Consensus 669 ~LN~dQr~A~~k~L~---aedy~LI~GMPGTGKTTtI~~-LIkiL~~---~gkkVLLtsyThsAVDNILi 731 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALA---AEDYALILGMPGTGKTTTISL-LIKILVA---LGKKVLLTSYTHSAVDNILI 731 (1100)
T ss_pred hcCHHHHHHHHHHHh---ccchheeecCCCCCchhhHHH-HHHHHHH---cCCeEEEEehhhHHHHHHHH
Confidence 678899999765544 678899999999999976443 4554443 35579999988877666533
No 202
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.11 E-value=0.0016 Score=69.74 Aligned_cols=72 Identities=17% Similarity=0.073 Sum_probs=55.8
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCK 82 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 82 (475)
.+++-|.+|+.. ....++|.|++|||||.+...-+...+...+.+..++|+++.|+..|..|.+++.+.++.
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~ 73 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGR 73 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCc
Confidence 478899887542 256789999999999998766566655544444557999999999999999998887653
No 203
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.07 E-value=0.0024 Score=69.03 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=44.6
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
.+++.|.+|+..++. .++-++|.|++|+|||++. -.+...+.. .+.+|++++||-..+..+
T Consensus 352 ~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll-~~i~~~~~~---~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTML-KAAREAWEA---AGYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHH-HHHHHHHHh---CCCeEEEEeCcHHHHHHH
Confidence 588999999887654 2456899999999999753 334444433 245799999998877663
No 204
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.06 E-value=0.0012 Score=65.37 Aligned_cols=63 Identities=25% Similarity=0.307 Sum_probs=44.4
Q ss_pred cccchhhhhhhhhcCCCC--CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHH
Q 011884 5 SLFPVQVAVWQETIGPGL--FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~--~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q 71 (475)
++++-|.+++..+++.+. .+..+.+.|+-|+|||+++ ..+.+.+.. .+..+++++||-.-|..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~---~~~~~~~~a~tg~AA~~ 65 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS---RGKKVLVTAPTGIAAFN 65 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc---ccceEEEecchHHHHHh
Confidence 367889999888866553 4578999999999999753 334444433 34469999998775544
No 205
>PRK04296 thymidine kinase; Provisional
Probab=96.98 E-value=0.0023 Score=57.14 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=24.3
Q ss_pred cEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEccc
Q 011884 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt 65 (475)
-.++.||+|+|||..++-.+.... . .+.+++++-|.
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~-~---~g~~v~i~k~~ 39 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYE-E---RGMKVLVFKPA 39 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH-H---cCCeEEEEecc
Confidence 468899999999986655444332 2 24468888663
No 206
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.96 E-value=0.0025 Score=69.05 Aligned_cols=74 Identities=19% Similarity=0.051 Sum_probs=57.7
Q ss_pred CcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccc
Q 011884 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 83 (475)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 83 (475)
..|++-|.+|+.. ....++|.|+.|||||.+...-+...+...+.+..++|+++-|+..|..|.+++.++++..
T Consensus 3 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~ 76 (715)
T TIGR01075 3 DGLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTS 76 (715)
T ss_pred cccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhccc
Confidence 5689999987542 2468999999999999986665555554444455589999999999999999998887643
No 207
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.89 E-value=0.003 Score=68.44 Aligned_cols=73 Identities=16% Similarity=0.036 Sum_probs=56.9
Q ss_pred CcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccc
Q 011884 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCK 82 (475)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 82 (475)
..+++-|.+|+.. ....++|.|+.|||||.+...-+...+...+.+..++|+++-|+..|..|.+++.++++.
T Consensus 8 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~ 80 (721)
T PRK11773 8 DSLNDKQREAVAA------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGT 80 (721)
T ss_pred HhcCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhcc
Confidence 3589999887542 246899999999999998766555555444445567999999999999999999888764
No 208
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.89 E-value=0.0021 Score=68.58 Aligned_cols=71 Identities=20% Similarity=0.088 Sum_probs=54.5
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 81 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 81 (475)
.+++-|.+|+. . ...+++|.|+.|||||.+...-+...+........++++++.|+..|..|.+++.+.++
T Consensus 196 ~L~~~Q~~av~---~---~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 196 PLNPSQARAVV---N---GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCHHHHHHHh---C---CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 58899988753 1 23568999999999999876655555554434455899999999999999988877654
No 209
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.74 E-value=0.016 Score=48.08 Aligned_cols=21 Identities=43% Similarity=0.496 Sum_probs=13.6
Q ss_pred CCCcEEEECCCCCchhHHhHH
Q 011884 23 FERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~ 43 (475)
+++.++|.||+|+|||.+.-.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHH
Confidence 356789999999999986544
No 210
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.63 E-value=0.008 Score=57.47 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=46.0
Q ss_pred CCCCcccchhhhhhhhhcCCCCCC-CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHH
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~-~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q 71 (475)
+|+...+-.|.=|+..+++ .. .=+.+.|+.|||||+.++.+.+.+....+ .-.++|+.=|+..+-++
T Consensus 224 wGi~prn~eQ~~ALdlLld---~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-~y~KiiVtRp~vpvG~d 291 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLD---DDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-RYRKIIVTRPTVPVGED 291 (436)
T ss_pred hccCcccHHHHHHHHHhcC---CCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-hhceEEEecCCcCcccc
Confidence 4664555566655544433 22 34778999999999999998888776653 34468888888776644
No 211
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.59 E-value=0.0091 Score=66.26 Aligned_cols=61 Identities=15% Similarity=0.002 Sum_probs=45.1
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
.+++.|.+|+..+. ..++-.+|.|+.|+|||++. .++...+.. .+.+|+.++||-.-+..+
T Consensus 381 ~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~---~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 381 RLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMM-KAAREAWEA---AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHH-HHHHHHHHH---cCCeEEEEcCcHHHHHHH
Confidence 68999999987653 23567899999999999743 445554443 355799999998877664
No 212
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.58 E-value=0.0047 Score=66.53 Aligned_cols=72 Identities=21% Similarity=0.108 Sum_probs=55.3
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCK 82 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 82 (475)
.+++-|.+|+.. ...+++|.|++|||||.+...-+...+...+.+..++++++.|+..+.++.+++.+.++.
T Consensus 1 ~Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~ 72 (664)
T TIGR01074 1 KLNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGK 72 (664)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCc
Confidence 368889887532 256899999999999988766666666443334457999999999999999998887654
No 213
>PRK06526 transposase; Provisional
Probab=96.52 E-value=0.0057 Score=57.15 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=29.9
Q ss_pred CCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHH
Q 011884 19 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (475)
Q Consensus 19 ~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q 71 (475)
+.+..+.+++++||+|+|||..+...+...+ . .+.+|++... ..+.++
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~-~---~g~~v~f~t~-~~l~~~ 140 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRAC-Q---AGHRVLFATA-AQWVAR 140 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHH-H---CCCchhhhhH-HHHHHH
Confidence 3444568999999999999987655444333 2 2335665433 344444
No 214
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.45 E-value=0.0079 Score=56.68 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=16.3
Q ss_pred CcEEEECCCCCchhHHhHH
Q 011884 25 RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~ 43 (475)
.++++.||+|+|||.++-.
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 6799999999999986644
No 215
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.44 E-value=0.014 Score=54.61 Aligned_cols=80 Identities=21% Similarity=0.327 Sum_probs=59.2
Q ss_pred HHHHHHHcCCeEEEEEcCCcccCCCCCC--------CcEEEEecCCCCHHHHHHHhhhccccCCCCcE-EEEe-ec--hh
Q 011884 370 KTLKAFREGKIQVLVSSDAMTRGMDVEG--------VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC-FTLL-HK--DE 437 (475)
Q Consensus 370 ~~~~~f~~g~~~iLv~t~~~~~GiDip~--------~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~-~~~~-~~--~~ 437 (475)
...+.|.+|+..|+|.+.+.+.|+.+.. -++-+.+.+|+|....+|..||+.|.++.... +.++ +. .|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5577999999999999999999998873 33677899999999999999999999975332 3332 22 34
Q ss_pred HHHHHHHHHHhc
Q 011884 438 VKRFKKLLQKAD 449 (475)
Q Consensus 438 ~~~~~~l~~~~~ 449 (475)
.....-+.++++
T Consensus 132 ~Rfas~va~rL~ 143 (278)
T PF13871_consen 132 RRFASTVARRLE 143 (278)
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 216
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.35 E-value=0.015 Score=48.70 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=23.7
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEccc
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt 65 (475)
+..+++.||+|+|||..+.. +...+.. .+..++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~-i~~~~~~---~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARA-IANELFR---PGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHhhc---CCCCeEEEehh
Confidence 57899999999999974433 3333321 23345555543
No 217
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.019 Score=56.86 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=24.3
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
..+++.||||+|||.+....+.........++.+|.+++
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit 213 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT 213 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEe
Confidence 568899999999998876544333222111334566555
No 218
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.27 E-value=0.0067 Score=65.97 Aligned_cols=73 Identities=23% Similarity=0.179 Sum_probs=56.8
Q ss_pred CcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccc
Q 011884 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCK 82 (475)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 82 (475)
..|++-|.+|+.. ....++|.|+.|||||.+...-+...+...+....++|+++-|+..|..|.+++.++++.
T Consensus 3 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~ 75 (726)
T TIGR01073 3 AHLNPEQREAVKT------TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGP 75 (726)
T ss_pred cccCHHHHHHHhC------CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhcc
Confidence 4689999987642 256899999999999998766566655543334457999999999999999999887654
No 219
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.27 E-value=0.016 Score=55.98 Aligned_cols=43 Identities=26% Similarity=0.241 Sum_probs=34.9
Q ss_pred CCcccchhhhhhhhhcCCCCCCC---cEEEECCCCCchhHHhHHHH
Q 011884 3 ISSLFPVQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 3 ~~~~~~~Q~~a~~~~~~~~~~~~---~~li~a~tGsGKT~~~~~~~ 45 (475)
++.++|||..+|+.+...+.+++ -.++.||.|+||+..+...+
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA 47 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALA 47 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHH
Confidence 46789999999999988777763 48999999999998665533
No 220
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.0082 Score=61.17 Aligned_cols=37 Identities=14% Similarity=0.060 Sum_probs=24.7
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~~ 45 (475)
+|..+.+.+.+.+..+ +.+|++||.|+|||.++.+.+
T Consensus 17 GQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 17 GQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHH
Confidence 4555554444444444 469999999999998765543
No 221
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.15 E-value=0.026 Score=60.80 Aligned_cols=81 Identities=12% Similarity=0.228 Sum_probs=69.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-cccCCCCCCCcEEE
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 402 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-~~~GiDip~~~~Vv 402 (475)
.+.++++.+||+..|.+.++.+++.. ..++.+..+||+++..+|.+.++...+|+.+|+|+|+. +...+.++++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 46699999999999999999988764 34588999999999999999999999999999999974 55567888888887
Q ss_pred Eec
Q 011884 403 NYD 405 (475)
Q Consensus 403 ~~~ 405 (475)
+-.
T Consensus 389 IDE 391 (681)
T PRK10917 389 IDE 391 (681)
T ss_pred Eec
Confidence 644
No 222
>PRK08181 transposase; Validated
Probab=96.11 E-value=0.056 Score=50.90 Aligned_cols=63 Identities=21% Similarity=0.122 Sum_probs=38.7
Q ss_pred ccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHh
Q 011884 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 73 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~ 73 (475)
+.+.|..++..+-..+..+.+++++||+|+|||..+...+.+.+ .. +.+|+++. ...|..++.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~-~~---g~~v~f~~-~~~L~~~l~ 150 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALI-EN---GWRVLFTR-TTDLVQKLQ 150 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHH-Hc---CCceeeee-HHHHHHHHH
Confidence 35666666543323444678899999999999986544333332 22 33465554 466777653
No 223
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.00 E-value=0.093 Score=46.44 Aligned_cols=43 Identities=19% Similarity=0.110 Sum_probs=28.6
Q ss_pred EEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhh
Q 011884 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNS 74 (475)
Q Consensus 27 ~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~ 74 (475)
++|.||+|+|||..++-.+...+. .+.+++|++.. +-..++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~----~g~~v~~~s~e-~~~~~~~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA----RGEPGLYVTLE-ESPEELIE 44 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----CCCcEEEEECC-CCHHHHHH
Confidence 689999999999876655555443 34568888754 33555433
No 224
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.97 E-value=0.025 Score=54.96 Aligned_cols=40 Identities=25% Similarity=0.493 Sum_probs=30.8
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHH
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 44 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~ 44 (475)
..+|||...|+.++..-.-.+-.|+.||.|.|||..+...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~ 42 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERL 42 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHH
Confidence 3589999999999875222245889999999999866553
No 225
>CHL00181 cbbX CbbX; Provisional
Probab=95.95 E-value=0.021 Score=54.43 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=17.4
Q ss_pred CCcEEEECCCCCchhHHhHHH
Q 011884 24 ERDLCINSPTGSGKTLSYALP 44 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~ 44 (475)
+.++++.||+|+|||.++-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456999999999999876554
No 226
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.93 E-value=0.024 Score=65.12 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=45.2
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhh-hccccceEEEcccHHHHHHH
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~-~~~~~~vlil~Pt~~L~~q~ 72 (475)
.+++.|.+|+..++.. .++-++|.|..|+|||+..- .++..+..- ...+..|+.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l~-~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQFR-AVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHHH-HHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 5899999998877652 24679999999999997532 233333221 11345799999998877764
No 227
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.86 E-value=0.07 Score=61.34 Aligned_cols=66 Identities=21% Similarity=0.149 Sum_probs=50.1
Q ss_pred ccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhc
Q 011884 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
+++-|.+|+. ..+.++++.|+.|||||.+..--++..+..+ ..-.++++++=|+..+..|..++.+
T Consensus 2 ~t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 2 WTDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRG-VDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-CCHhhEEEEeccHHHHHHHHHHHHH
Confidence 5788988753 2578999999999999998766666665543 2224699999999999887666433
No 228
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.75 E-value=0.019 Score=59.21 Aligned_cols=72 Identities=21% Similarity=0.096 Sum_probs=51.7
Q ss_pred chhhhhhhhhcCCC-CCC----CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcc
Q 011884 8 PVQVAVWQETIGPG-LFE----RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 8 ~~Q~~a~~~~~~~~-~~~----~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 79 (475)
|||.-.+..++..- ..+ +.+++.-|=|.|||......++..+.-.+..+..++++++++..|...+..++++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 67877766666431 012 5688999999999987666556555544455678999999999999977765554
No 229
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.72 E-value=0.037 Score=52.80 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.8
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
+.++++.||+|+|||.++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 45799999999999987644
No 230
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.70 E-value=0.018 Score=58.16 Aligned_cols=36 Identities=17% Similarity=0.010 Sum_probs=24.7
Q ss_pred hhhhhhhhhcCCCCCCC---cEEEECCCCCchhHHhHHH
Q 011884 9 VQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYALP 44 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~---~~li~a~tGsGKT~~~~~~ 44 (475)
+|..++..+...+.+++ .+|++||.|+|||.++.+.
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 56666555444454553 3799999999999876553
No 231
>PRK06893 DNA replication initiation factor; Validated
Probab=95.65 E-value=0.051 Score=50.05 Aligned_cols=36 Identities=14% Similarity=-0.057 Sum_probs=21.8
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
..++++||+|+|||..+...+ ..+... +.+++|+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~-~~~~~~---~~~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVS-NHYLLN---QRTAIYIPL 75 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHH-HHHHHc---CCCeEEeeH
Confidence 347899999999998554433 333222 234655543
No 232
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.64 E-value=0.048 Score=58.21 Aligned_cols=81 Identities=14% Similarity=0.228 Sum_probs=69.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-cccCCCCCCCcEEE
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 402 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-~~~GiDip~~~~Vv 402 (475)
.+.++++.+||+..|.+.++.+++.. ..++++..++|+++..+|...++...+|+.+|+|+|+. +...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 46699999999999999999888764 34689999999999999999999999999999999985 45567888888877
Q ss_pred Eec
Q 011884 403 NYD 405 (475)
Q Consensus 403 ~~~ 405 (475)
+-.
T Consensus 363 IDE 365 (630)
T TIGR00643 363 IDE 365 (630)
T ss_pred Eec
Confidence 644
No 233
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.59 E-value=0.044 Score=63.87 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=45.4
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhh-hccccceEEEcccHHHHHHH
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~-~~~~~~vlil~Pt~~L~~q~ 72 (475)
.+++.|.+|+..++.. .++-++|.|..|+|||+.. -.+...+... ...+.+|+.++||-.-+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 5799999998877651 2467899999999999753 3344443321 11345689999998877663
No 234
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.49 E-value=0.019 Score=50.61 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=31.2
Q ss_pred cCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhh
Q 011884 18 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNS 74 (475)
Q Consensus 18 ~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~ 74 (475)
...+.++.++++.||+|+|||..+...+-+.+. . +..|+|+ +...|...+.+
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~---g~~v~f~-~~~~L~~~l~~ 92 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLAVAIANEAIR-K---GYSVLFI-TASDLLDELKQ 92 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHHHHHHHHHHH-T---T--EEEE-EHHHHHHHHHC
T ss_pred CCCcccCeEEEEEhhHhHHHHHHHHHHHHHhcc-C---CcceeEe-ecCceeccccc
Confidence 345556789999999999999876554444333 2 3346664 55677777643
No 235
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.49 E-value=0.021 Score=56.59 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=24.2
Q ss_pred hhhhhhhhhcCCCCCC--Cc-EEEECCCCCchhHHhHH
Q 011884 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYAL 43 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~li~a~tGsGKT~~~~~ 43 (475)
+|..+.+.+...+..+ .+ +++.||+|+|||..+..
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARL 57 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHH
Confidence 5666665555555454 23 68999999999986655
No 236
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=95.45 E-value=0.0047 Score=54.31 Aligned_cols=52 Identities=21% Similarity=0.158 Sum_probs=35.2
Q ss_pred cCCchhHHHhhhcCCcEEEeCchHHHHHhhcCCCc-ccCCccEEEEcchHHHH
Q 011884 153 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLL 204 (475)
Q Consensus 153 ~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~-~~~~~~~lVvDE~H~l~ 204 (475)
..+|+...+.....++|+|+++..+++-....... ...+-.+|||||||++.
T Consensus 106 ~~CPY~~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~ 158 (174)
T PF06733_consen 106 GVCPYYLARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLE 158 (174)
T ss_dssp T--HHHHHHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCG
T ss_pred CCChhHHHHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchH
Confidence 46788899999999999999999886643221111 12345799999999884
No 237
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.42 E-value=0.064 Score=52.59 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=26.9
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~ 66 (475)
++-+.+.||||.|||++....+....+..+ +....||.+-|-
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtY 244 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTY 244 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccc
Confidence 677999999999999987665555553332 222344444443
No 238
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.39 E-value=0.035 Score=57.03 Aligned_cols=37 Identities=19% Similarity=0.024 Sum_probs=25.2
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~~ 45 (475)
+|..++..+...+.++ +.+|++||.|+|||.++.+.+
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 5655555444444444 469999999999998765533
No 239
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.35 E-value=0.18 Score=43.12 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=24.4
Q ss_pred EEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHH
Q 011884 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (475)
Q Consensus 27 ~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L 68 (475)
++|.||+|+|||..+...+... .. .+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~-~~---~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI-AT---KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH-Hh---cCCEEEEEECCcch
Confidence 5789999999998654433332 22 34467777755443
No 240
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.35 E-value=0.02 Score=61.80 Aligned_cols=35 Identities=20% Similarity=0.097 Sum_probs=23.5
Q ss_pred hhhhhhhhhcCCCCCC--Cc-EEEECCCCCchhHHhHH
Q 011884 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYAL 43 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~li~a~tGsGKT~~~~~ 43 (475)
+|..++..+.+.+..+ .+ +|++||.|+|||.++.+
T Consensus 20 GQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARi 57 (944)
T PRK14949 20 GQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARL 57 (944)
T ss_pred CcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHH
Confidence 4555555444444444 34 58999999999987655
No 241
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.33 E-value=0.023 Score=59.38 Aligned_cols=36 Identities=17% Similarity=-0.021 Sum_probs=24.1
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALP 44 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~ 44 (475)
+|..+...+...+.++ +-+|++||.|+|||.++.+.
T Consensus 19 GQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 19 GQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4555555444445455 34699999999999876553
No 242
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.32 E-value=0.037 Score=58.66 Aligned_cols=35 Identities=17% Similarity=-0.026 Sum_probs=24.1
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~ 43 (475)
+|..+++.+.+.+.++ +-+|++||.|+|||.++.+
T Consensus 20 GQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 20 GQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHH
Confidence 4666655555555554 2368999999999986654
No 243
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.29 E-value=0.075 Score=46.03 Aligned_cols=38 Identities=18% Similarity=0.010 Sum_probs=25.3
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHHHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIV 46 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~~~ 46 (475)
+|.++++.+...+.++ +..|+.||.|+||+..+...+-
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~ 41 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFAR 41 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHH
Confidence 4566666655555555 3479999999999976655333
No 244
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.27 E-value=0.078 Score=63.34 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=46.4
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhh
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNS 74 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~ 74 (475)
.+++.|.+|+..++.. ..+-.+|.|+.|+|||.+. -.+...+... +.+|+.++||..-+..+.+
T Consensus 429 ~Ls~~Q~~Av~~il~s--~~~v~ii~G~aGTGKTt~l-~~l~~~~~~~---G~~V~~lAPTgrAA~~L~e 492 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTS--TKRFIIINGFGGTGSTEIA-QLLLHLASEQ---GYEIQIITAGSLSAQELRQ 492 (1960)
T ss_pred CCCHHHHHHHHHHHhC--CCCeEEEEECCCCCHHHHH-HHHHHHHHhc---CCeEEEEeCCHHHHHHHHH
Confidence 5789999998776551 2367899999999999743 4444544433 4579999999987777533
No 245
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.24 E-value=0.099 Score=45.89 Aligned_cols=39 Identities=26% Similarity=0.210 Sum_probs=27.5
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHH
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~ 67 (475)
.=.+++||++||||... ++.+.+....+.++++..|...
T Consensus 5 ~l~~i~gpM~SGKT~eL----l~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 5 WLEFIYGPMFSGKTEEL----LRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEEEEccCcCcchHHH----HHHHHHHHHcCCeEEEEecccc
Confidence 34578999999999753 3333444456778999999643
No 246
>PLN03025 replication factor C subunit; Provisional
Probab=95.23 E-value=0.05 Score=52.92 Aligned_cols=19 Identities=37% Similarity=0.601 Sum_probs=16.0
Q ss_pred CcEEEECCCCCchhHHhHH
Q 011884 25 RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~ 43 (475)
.+++++||+|+|||..+..
T Consensus 35 ~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILA 53 (319)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5799999999999976544
No 247
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.22 E-value=0.052 Score=55.47 Aligned_cols=35 Identities=23% Similarity=0.148 Sum_probs=22.5
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~ 43 (475)
+|..+...+...+.++ +.++++||+|+|||..+.+
T Consensus 18 Gq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 18 GQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARI 55 (472)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 3555444443344444 3379999999999986655
No 248
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.19 E-value=0.12 Score=49.29 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=23.7
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
+..+++.||||+|||++....+.......+ +.+|.++.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g--~~~V~li~ 231 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHG--NKKVALIT 231 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcC--CCeEEEEE
Confidence 467889999999999876554433322211 23455554
No 249
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.18 E-value=0.028 Score=54.26 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=37.9
Q ss_pred ccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHH
Q 011884 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 69 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~ 69 (475)
+++.|.+.+..++. .+.+++|+|+||||||.. +.+++..+... .++.+++.+=.+.+|.
T Consensus 129 ~~~~~~~~L~~~v~---~~~nilI~G~tGSGKTTl-l~aL~~~i~~~-~~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAID---SRLNIVISGGTGSGKTTL-ANAVIAEIVAS-APEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHHHhcC-CCCceEEEecCCcccc
Confidence 45566666555554 568899999999999974 45555554321 1234677776666654
No 250
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.07 Score=52.64 Aligned_cols=45 Identities=22% Similarity=0.409 Sum_probs=29.0
Q ss_pred cchhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHHHHHHHhhh
Q 011884 7 FPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLSNR 52 (475)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~~~~~l~~~ 52 (475)
|..|.+.+..++..+.++ .+++|.|+||+|||.+.-. +...+...
T Consensus 22 Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~-v~~~l~~~ 69 (366)
T COG1474 22 REEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKF-VMEELEES 69 (366)
T ss_pred cHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHH-HHHHHHhh
Confidence 445555555555544444 5699999999999986544 45555444
No 251
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=95.16 E-value=0.098 Score=48.33 Aligned_cols=86 Identities=16% Similarity=0.308 Sum_probs=63.8
Q ss_pred eeeEEeccccCHHHHHHHHHHHHcCC----eEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhh--ccccCCCC
Q 011884 354 IKIKEYSGLQRQSVRSKTLKAFREGK----IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR--TARAGQLG 427 (475)
Q Consensus 354 ~~~~~~~g~~~~~~r~~~~~~f~~g~----~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR--~~R~~~~g 427 (475)
+.+..++++.+... -++.++. ..|+|+-+.+++|+-++++.+-.+...++..+++.|| || +-|.|-.+
T Consensus 111 ~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~Qm-gRwFGYR~gY~d 184 (239)
T PF10593_consen 111 IEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQM-GRWFGYRPGYED 184 (239)
T ss_pred ceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHH-hhcccCCccccc
Confidence 67777776654422 3444443 7899999999999999999998899999989999998 66 45666567
Q ss_pred cEEEEeechhHHHHHHHH
Q 011884 428 RCFTLLHKDEVKRFKKLL 445 (475)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~ 445 (475)
.|-++++.+-...+..+.
T Consensus 185 l~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIA 202 (239)
T ss_pred ceEEecCHHHHHHHHHHH
Confidence 788888776555555443
No 252
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.11 E-value=0.052 Score=50.73 Aligned_cols=67 Identities=15% Similarity=0.069 Sum_probs=41.3
Q ss_pred cccchhhhhhhhh---cCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhh
Q 011884 5 SLFPVQVAVWQET---IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 76 (475)
Q Consensus 5 ~~~~~Q~~a~~~~---~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~ 76 (475)
.....+.+++..+ ...+.++.++++.||+|+|||..+...+...+ . ++ .-++.+++.+++.++...+
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~---~g-~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 83 FQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K---AG-ISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred CCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H---cC-CeEEEEEHHHHHHHHHHHH
Confidence 3344444444333 23444678999999999999987655444433 3 23 3445556678888865543
No 253
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.06 E-value=0.062 Score=50.79 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=14.5
Q ss_pred CcEEEECCCCCchhHH
Q 011884 25 RDLCINSPTGSGKTLS 40 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~ 40 (475)
.+++|.|+||.|||..
T Consensus 62 p~lLivG~snnGKT~I 77 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI 77 (302)
T ss_pred CceEEecCCCCcHHHH
Confidence 6899999999999974
No 254
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.98 E-value=0.19 Score=45.96 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=24.3
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
+.+.|+||+|+|||-. +.++...+... .++.+|+++..
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~-~~~~~v~y~~~ 72 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQ-HPGKRVVYLSA 72 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHH-CTTS-EEEEEH
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhc-cccccceeecH
Confidence 4589999999999984 34444444332 23556777765
No 255
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.94 E-value=0.033 Score=57.48 Aligned_cols=35 Identities=17% Similarity=0.067 Sum_probs=24.4
Q ss_pred hhhhhhhhhcCCCCCC--Cc-EEEECCCCCchhHHhHH
Q 011884 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYAL 43 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~li~a~tGsGKT~~~~~ 43 (475)
+|..+++.+.+.+..+ .+ +|++||.|+|||.++.+
T Consensus 20 Gq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 20 GQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRI 57 (509)
T ss_pred CCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHH
Confidence 5666655555555454 33 69999999999987655
No 256
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.92 E-value=0.15 Score=52.11 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=26.5
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHH
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q 71 (475)
+.+++.||+|+|||..+.. +...+... ..+.+++++.. ..+..+
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~-~~~~~v~yi~~-~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEK-NPNAKVVYVTS-EKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHh-CCCCeEEEEEH-HHHHHH
Confidence 5689999999999985533 33333332 12345666643 454444
No 257
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.90 E-value=0.062 Score=52.41 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=32.7
Q ss_pred ccchhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHHH
Q 011884 6 LFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~~ 45 (475)
++|||..+|+.+...+.++ +-.|+.||.|.||+..+...+
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A 45 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHH
Confidence 5899999999998887776 347899999999998665533
No 258
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.90 E-value=0.2 Score=53.48 Aligned_cols=92 Identities=17% Similarity=0.097 Sum_probs=73.4
Q ss_pred CcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCc
Q 011884 312 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 389 (475)
Q Consensus 312 ~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~ 389 (475)
.|.+....+++.. .++++||.+|....+.++.+.|++... +..+..+|++++..+|.+...+..+|+.+|+|+|...
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~-~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLG-AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 5655555555433 477899999999999999999998652 2568899999999999999999999999999999873
Q ss_pred ccCCCCCCCcEEEEec
Q 011884 390 TRGMDVEGVNNVVNYD 405 (475)
Q Consensus 390 ~~GiDip~~~~Vv~~~ 405 (475)
- -.-++++..||+.+
T Consensus 251 v-FaP~~~LgLIIvdE 265 (665)
T PRK14873 251 V-FAPVEDLGLVAIWD 265 (665)
T ss_pred E-EeccCCCCEEEEEc
Confidence 2 34556777777654
No 259
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.85 E-value=0.094 Score=51.51 Aligned_cols=41 Identities=12% Similarity=-0.013 Sum_probs=28.1
Q ss_pred hhhhhhhhhcCCCCCCC---cEEEECCCCCchhHHhHHHHHHHHh
Q 011884 9 VQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYALPIVQTLS 50 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~---~~li~a~tGsGKT~~~~~~~~~~l~ 50 (475)
.|.++...+...+.+++ -.++.||.|+|||..+.. +...+.
T Consensus 27 Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~-lA~~Ll 70 (351)
T PRK09112 27 GHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFH-LANHIL 70 (351)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHH-HHHHHc
Confidence 45666666666666664 489999999999986654 333343
No 260
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.80 E-value=0.082 Score=56.09 Aligned_cols=102 Identities=20% Similarity=0.221 Sum_probs=86.0
Q ss_pred CeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCC--eEEEEEcCCcccCCCCCCCcEEEEe
Q 011884 327 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSDAMTRGMDVEGVNNVVNY 404 (475)
Q Consensus 327 ~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~--~~iLv~t~~~~~GiDip~~~~Vv~~ 404 (475)
.+++||+.-..-+..+...+...+ .....+.|.|+...|.+.+..|..+. .-.+++..+...|+++..+.+|+..
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~---~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~ 616 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKG---FVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLM 616 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcc---cccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhh
Confidence 489999988888888877777443 77788899999999999999998653 2344677788899999999999999
Q ss_pred cCCCCHHHHHHHhhhccccCCCCcEEE
Q 011884 405 DKPAYIKTYIHRAGRTARAGQLGRCFT 431 (475)
Q Consensus 405 ~~~~s~~~~~Q~~GR~~R~~~~g~~~~ 431 (475)
++.+|+...-|++-|+.|.|+...+.+
T Consensus 617 d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 617 DPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred chhcChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999999997766654
No 261
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.79 E-value=0.079 Score=51.28 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=32.4
Q ss_pred ccchhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHHH
Q 011884 6 LFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~~ 45 (475)
.+|||..+|+.+...+.++ +-.++.||.|.||+..+...+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A 45 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA 45 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH
Confidence 4899999999998887776 347799999999998665533
No 262
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.76 E-value=0.076 Score=63.41 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=43.5
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhH---HHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA---LPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~---~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
.+++.|.+|+..++. ..++-++|.|+.|+|||+... .++...+.. .+.+|+.++||-.-+.++
T Consensus 1019 ~Lt~~Q~~Ai~~il~--~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~---~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIIS--TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES---EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHHH
Confidence 589999999877654 123567889999999997541 122232222 345799999998877664
No 263
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.75 E-value=0.17 Score=52.30 Aligned_cols=78 Identities=8% Similarity=0.105 Sum_probs=64.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEe
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 404 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~ 404 (475)
.++++|+.+|+...+.++++.+++.. +..+..+||+++..+|.+...+..+|+.+|+|+|...- -..++++..||+-
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f--~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~~~l~lIIVD 100 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRF--GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPFKNLGLIIVD 100 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHh--CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcccCCCEEEEE
Confidence 46789999999999999999998753 36788999999999999999999999999999997532 2456677877765
Q ss_pred c
Q 011884 405 D 405 (475)
Q Consensus 405 ~ 405 (475)
+
T Consensus 101 E 101 (505)
T TIGR00595 101 E 101 (505)
T ss_pred C
Confidence 5
No 264
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.73 E-value=0.12 Score=57.31 Aligned_cols=81 Identities=11% Similarity=0.235 Sum_probs=67.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-cccCCCCCCCcEEE
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 402 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-~~~GiDip~~~~Vv 402 (475)
.+.+++|.+||...|.+.++.+++.. ..++++..++|..+..++.++++.+++|+.+|+|+|+. +...+.+.++.++|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 45789999999999999999888753 34578889999999999999999999999999999984 44567888888877
Q ss_pred Eec
Q 011884 403 NYD 405 (475)
Q Consensus 403 ~~~ 405 (475)
+-.
T Consensus 579 IDE 581 (926)
T TIGR00580 579 IDE 581 (926)
T ss_pred eec
Confidence 643
No 265
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.72 E-value=0.19 Score=54.00 Aligned_cols=79 Identities=6% Similarity=0.104 Sum_probs=65.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEe
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 404 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~ 404 (475)
.+.++||.+|+++.+.++.+.+++.. +..+..+||+++..+|.+...+..+|+.+|+|+|...- -..++++..||+-
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~f--g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvD 265 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARF--GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVD 265 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHh--CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEE
Confidence 36789999999999999999998753 36789999999999999999999999999999997432 2456678888776
Q ss_pred cC
Q 011884 405 DK 406 (475)
Q Consensus 405 ~~ 406 (475)
+.
T Consensus 266 Ee 267 (679)
T PRK05580 266 EE 267 (679)
T ss_pred CC
Confidence 53
No 266
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.71 E-value=0.072 Score=54.94 Aligned_cols=35 Identities=23% Similarity=0.151 Sum_probs=22.5
Q ss_pred hhhhhhhhhcCCCCCC--Cc-EEEECCCCCchhHHhHH
Q 011884 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYAL 43 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~li~a~tGsGKT~~~~~ 43 (475)
+|..+...+...+.++ .+ +|++||+|+|||.++..
T Consensus 18 Gq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 18 GQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARL 55 (504)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 3555544443434344 23 49999999999987654
No 267
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.68 E-value=0.054 Score=51.96 Aligned_cols=58 Identities=24% Similarity=0.310 Sum_probs=36.6
Q ss_pred cchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHH
Q 011884 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 69 (475)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~ 69 (475)
++-|.+.+..++. .+.+++|+||||||||.. +.+++..+... .+..+++.+=.+.++.
T Consensus 118 ~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTl-l~al~~~i~~~-~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 118 TAAQRDVLREAVL---ARKNILVVGGTGSGKTTL-ANALLAEIAKN-DPTDRVVIIEDTRELQ 175 (299)
T ss_pred CHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHHhhcc-CCCceEEEECCchhhc
Confidence 3334444444433 568999999999999974 34455554331 1234688887777764
No 268
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.67 E-value=0.049 Score=56.92 Aligned_cols=35 Identities=17% Similarity=0.034 Sum_probs=24.4
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~ 43 (475)
+|..+.+.+.+.+.++ +-+|++||.|+|||..+.+
T Consensus 20 GQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAri 57 (700)
T PRK12323 20 GQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRI 57 (700)
T ss_pred CcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHH
Confidence 4666555555555555 2369999999999987655
No 269
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.64 E-value=0.081 Score=56.90 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=24.7
Q ss_pred cchhhhhhhhhcCCCCCC---CcE-EEECCCCCchhHHhHHHHHHHH
Q 011884 7 FPVQVAVWQETIGPGLFE---RDL-CINSPTGSGKTLSYALPIVQTL 49 (475)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~---~~~-li~a~tGsGKT~~~~~~~~~~l 49 (475)
|.-|.+.+..++.....+ .++ .|.|+||+|||.+.-. ++..+
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~-VLrEL 805 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYS-VIQLL 805 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHH-HHHHH
Confidence 334444444444433332 244 5999999999987655 34444
No 270
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.62 E-value=0.082 Score=55.59 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=25.6
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~~ 45 (475)
+|..++..+.+.+.++ +.+|++||.|+|||.++.+.+
T Consensus 28 Gq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 28 GQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 4555555555555455 459999999999998776544
No 271
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.60 E-value=0.062 Score=53.95 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=25.7
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~~ 45 (475)
+|..+.+.+...+.++ +.+|++||.|+|||.++...+
T Consensus 20 Gq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 20 AQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred ChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHH
Confidence 5666655555555555 338899999999998775543
No 272
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.59 E-value=0.27 Score=48.42 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=25.5
Q ss_pred CCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 22 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 22 ~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
..+..+++.||||+|||++....+.......+ ..+|.+++
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G--~~~V~lit 174 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFG--ASKVALLT 174 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEe
Confidence 34678999999999999876664444333321 12455554
No 273
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.58 E-value=0.044 Score=52.99 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=37.7
Q ss_pred ccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHH
Q 011884 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 69 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~ 69 (475)
+++.|.+.+..++. .+.+++|+|+||||||. ++.+++..+... .+..+++++-.+.++.
T Consensus 133 ~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~-~~~~rivtIEd~~El~ 191 (319)
T PRK13894 133 MTAAQREAIIAAVR---AHRNILVIGGTGSGKTT-LVNAIINEMVIQ-DPTERVFIIEDTGEIQ 191 (319)
T ss_pred CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHH-HHHHHHHhhhhc-CCCceEEEEcCCCccc
Confidence 44556666555444 57899999999999995 445455443211 1334677777777663
No 274
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.52 E-value=0.16 Score=55.05 Aligned_cols=75 Identities=12% Similarity=0.278 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCC--ceeeEE-eccccCHHHHHHHHHHHHcCCeEEEEEcCCc
Q 011884 315 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKE-YSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 389 (475)
Q Consensus 315 ~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~--~~~~~~-~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~ 389 (475)
..+..+.-...+.++++.+||...+.++++.|++.... +..+.+ +||.++..++++.+++|.+|..+|||+|+.+
T Consensus 114 g~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 114 GLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 34445555556789999999999999999999887421 133333 9999999999999999999999999999864
No 275
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.50 E-value=0.046 Score=57.62 Aligned_cols=37 Identities=22% Similarity=0.088 Sum_probs=25.9
Q ss_pred hhhhhhhhhcCCCCCCC--c-EEEECCCCCchhHHhHHHH
Q 011884 9 VQVAVWQETIGPGLFER--D-LCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~--~-~li~a~tGsGKT~~~~~~~ 45 (475)
+|..++..+...+.+++ + .|+.||.|+|||.++.+.+
T Consensus 20 GQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 20 GQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 56666665555555553 3 6899999999998765543
No 276
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.43 E-value=0.056 Score=51.71 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=42.2
Q ss_pred CCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHH
Q 011884 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (475)
Q Consensus 3 ~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q 71 (475)
|...++-|...+..++. ...++|++|+||||||+. +.++...+. .+.++|.+=-|.+|.-+
T Consensus 155 ~gt~~~~~a~~L~~av~---~r~NILisGGTGSGKTTl-LNal~~~i~----~~eRvItiEDtaELql~ 215 (355)
T COG4962 155 FGTMIRRAAKFLRRAVG---IRCNILISGGTGSGKTTL-LNALSGFID----SDERVITIEDTAELQLA 215 (355)
T ss_pred cCCcCHHHHHHHHHHHh---hceeEEEeCCCCCCHHHH-HHHHHhcCC----CcccEEEEeehhhhccC
Confidence 55667777776665555 347999999999999963 333333332 23489999999888655
No 277
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.39 E-value=0.048 Score=57.54 Aligned_cols=36 Identities=17% Similarity=-0.013 Sum_probs=24.6
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALP 44 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~ 44 (475)
+|..++..+...+..+ +.+|++||.|+|||.++.+.
T Consensus 20 GQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriL 58 (709)
T PRK08691 20 GQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARIL 58 (709)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHH
Confidence 4556555554545455 34799999999999876553
No 278
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.31 E-value=0.3 Score=43.74 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=22.2
Q ss_pred cEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
-+++.||||+|||.+....+.....+ +.+|.+++
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~----~~~v~lis 36 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK----GKKVALIS 36 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT----T--EEEEE
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc----cccceeec
Confidence 36789999999999876655444333 33566665
No 279
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.26 E-value=0.066 Score=55.49 Aligned_cols=37 Identities=16% Similarity=0.038 Sum_probs=25.5
Q ss_pred hhhhhhhhhcCCCCCCC---cEEEECCCCCchhHHhHHHH
Q 011884 9 VQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~---~~li~a~tGsGKT~~~~~~~ 45 (475)
+|..+++.+...+..++ -+|++||.|+|||..+...+
T Consensus 20 Gq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 20 GQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 56666655555555542 37899999999998765533
No 280
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.26 E-value=0.2 Score=49.42 Aligned_cols=38 Identities=16% Similarity=-0.010 Sum_probs=28.6
Q ss_pred hhhhhhhhhcCCCCCC--C-cEEEECCCCCchhHHhHHHHH
Q 011884 9 VQVAVWQETIGPGLFE--R-DLCINSPTGSGKTLSYALPIV 46 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~-~~li~a~tGsGKT~~~~~~~~ 46 (475)
+|.++.+.+...+.++ . -.|+.||.|+||+..+...+-
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 7788877777777666 2 489999999999986655333
No 281
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=94.26 E-value=0.15 Score=54.96 Aligned_cols=89 Identities=17% Similarity=0.092 Sum_probs=63.9
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
++++-|.+|+... ...++|.|+.|||||.+...-+.+.+...+.....++.++=|+..|.+|..++.+++..+.
T Consensus 2 ~Ln~~Q~~av~~~------~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~~~~ 75 (655)
T COG0210 2 KLNPEQREAVLHP------DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLGLPA 75 (655)
T ss_pred CCCHHHHHHHhcC------CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhCccc
Confidence 5789999986432 6788999999999999876666666655444555699999899999999999999887533
Q ss_pred ccccchhhhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQ 99 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~ 99 (475)
...+.-+--+-+|.+
T Consensus 76 ~~~~~v~TfHs~~~~ 90 (655)
T COG0210 76 AEGLTVGTFHSFALR 90 (655)
T ss_pred ccCcEEeeHHHHHHH
Confidence 222333333555554
No 282
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.24 E-value=0.17 Score=49.43 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=29.8
Q ss_pred ccchhhhhhhhhcCCCCC-CCcEEEECCCCCchhHHhHHHH
Q 011884 6 LFPVQVAVWQETIGPGLF-ERDLCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~-~~~~li~a~tGsGKT~~~~~~~ 45 (475)
++|||...|+.+.....+ .+-.++.||.|.||+..+...+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 479999999998774211 1458899999999998665533
No 283
>PTZ00293 thymidine kinase; Provisional
Probab=94.17 E-value=0.12 Score=46.46 Aligned_cols=40 Identities=20% Similarity=0.110 Sum_probs=26.8
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~ 67 (475)
|.=-++.||++||||.-.+-.+.... ..+.+++++-|...
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~----~ag~kv~~~kp~~D 43 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFT----YSEKKCVVIKYSKD 43 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHH----HcCCceEEEEeccc
Confidence 44467899999999975544333222 24557999999643
No 284
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.12 E-value=0.08 Score=54.65 Aligned_cols=35 Identities=23% Similarity=0.022 Sum_probs=23.1
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~ 43 (475)
+|..+.+.+...+.++ +-.|++||.|+|||.++..
T Consensus 18 Gqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~ 55 (535)
T PRK08451 18 GQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARI 55 (535)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHH
Confidence 4555544444444455 2358999999999986655
No 285
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.12 E-value=0.26 Score=43.71 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.7
Q ss_pred CcEEEECCCCCchhHHhHH
Q 011884 25 RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~ 43 (475)
+.+|+.||+|+|||..+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~ 33 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALA 33 (188)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4589999999999976544
No 286
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.12 E-value=0.091 Score=52.74 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=18.3
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHh
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLS 50 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~ 50 (475)
.+++|.||+|+|||.+.-. ++..+.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~-v~~~l~ 80 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKK-VFEELE 80 (394)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 6799999999999975433 444443
No 287
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.12 E-value=0.053 Score=56.74 Aligned_cols=37 Identities=22% Similarity=0.082 Sum_probs=25.9
Q ss_pred hhhhhhhhhcCCCCCC--Cc-EEEECCCCCchhHHhHHHH
Q 011884 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~li~a~tGsGKT~~~~~~~ 45 (475)
+|..+.+.+...+.++ .+ +|++||.|+|||.++.+.+
T Consensus 17 Gq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 17 GQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILA 56 (584)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 5666666555555555 34 6899999999998765533
No 288
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.11 E-value=0.16 Score=49.34 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=30.1
Q ss_pred ccchhhhhhhhhcCCCCCC-CcEEEECCCCCchhHHhHHH
Q 011884 6 LFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALP 44 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~-~~~li~a~tGsGKT~~~~~~ 44 (475)
.+|||..+|+.+.....+- .-.++.||.|.|||..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 4799999999988763322 34889999999999866553
No 289
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.10 E-value=0.17 Score=57.34 Aligned_cols=80 Identities=11% Similarity=0.192 Sum_probs=65.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-cccCCCCCCCcEEE
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 402 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-~~~GiDip~~~~Vv 402 (475)
.+.+++|.+||+..|.++++.+++.. ..++++..++|+.+..++.++++..++|+.+|+|+|+. +...+.+.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 46689999999999999999888743 34577888999999999999999999999999999974 44456677788777
Q ss_pred Ee
Q 011884 403 NY 404 (475)
Q Consensus 403 ~~ 404 (475)
+-
T Consensus 728 ID 729 (1147)
T PRK10689 728 VD 729 (1147)
T ss_pred Ee
Confidence 53
No 290
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.09 E-value=0.21 Score=50.39 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=24.4
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
+.+++.||+|+|||..+. ++...+... ..+.+++++..
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~-~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILEN-NPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHh-CCCCcEEEEEH
Confidence 458899999999998553 344444332 22446777743
No 291
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.08 E-value=0.19 Score=49.48 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=23.4
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
..+++.||||+|||.+....+.. +.. .+.++.++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~---~GkkVglI~ 276 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG---KKKTVGFIT 276 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH---cCCcEEEEe
Confidence 56889999999999876654443 332 233565554
No 292
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.06 E-value=0.13 Score=56.20 Aligned_cols=37 Identities=22% Similarity=0.064 Sum_probs=24.9
Q ss_pred hhhhhhhhhcCCCCCC--Cc-EEEECCCCCchhHHhHHHH
Q 011884 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~li~a~tGsGKT~~~~~~~ 45 (475)
+|..+...+...+.++ .+ +|++||.|+|||.++.+.+
T Consensus 19 Gqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lA 58 (824)
T PRK07764 19 GQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILA 58 (824)
T ss_pred CcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHH
Confidence 4555555444444444 34 7899999999998776644
No 293
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.98 E-value=0.29 Score=49.91 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=27.9
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHH
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q 71 (475)
+.+++.|++|+|||..+ .++...+... .++.+++++.+ ..+..+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~-~~~~~v~yv~~-~~f~~~ 185 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN-FSDLKVSYMSG-DEFARK 185 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh-CCCCeEEEEEH-HHHHHH
Confidence 55899999999999744 3444444332 23456777665 455555
No 294
>PRK14974 cell division protein FtsY; Provisional
Probab=93.94 E-value=0.4 Score=46.70 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=23.0
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
.-+++.|++|+|||.+....+ ..+... +.+++++.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~~---g~~V~li~ 175 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKKN---GFSVVIAA 175 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHHc---CCeEEEec
Confidence 458889999999998655533 334332 34566665
No 295
>PHA02533 17 large terminase protein; Provisional
Probab=93.92 E-value=0.46 Score=49.41 Aligned_cols=67 Identities=13% Similarity=0.007 Sum_probs=47.6
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhh
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARC 77 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~ 77 (475)
.|+|+|...+..+. .++-.++..+=..|||.+....++...... ++..+++++|+...+..+++.++
T Consensus 59 ~L~p~Q~~i~~~~~----~~R~~ii~~aRq~GKStl~a~~al~~a~~~--~~~~v~i~A~~~~QA~~vF~~ik 125 (534)
T PHA02533 59 QMRDYQKDMLKIMH----KNRFNACNLSRQLGKTTVVAIFLLHYVCFN--KDKNVGILAHKASMAAEVLDRTK 125 (534)
T ss_pred CCcHHHHHHHHHHh----cCeEEEEEEcCcCChHHHHHHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHH
Confidence 57899988766542 345567889999999998765454433322 35589999999998888665543
No 296
>PF13173 AAA_14: AAA domain
Probab=93.92 E-value=0.35 Score=39.94 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=15.1
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
++-++|.||.|+|||+..
T Consensus 2 ~~~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLL 19 (128)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 466899999999999754
No 297
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.84 E-value=0.075 Score=55.56 Aligned_cols=35 Identities=23% Similarity=0.056 Sum_probs=24.8
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~ 43 (475)
+|..+...+...+.++ +-.|++||.|+|||.++..
T Consensus 20 Gqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 20 GQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARA 57 (563)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 5666665555555555 3378999999999986655
No 298
>PRK05642 DNA replication initiation factor; Validated
Probab=93.83 E-value=0.3 Score=45.09 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=22.6
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
..++++||+|+|||..+.. +...+.. .+.+++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a-~~~~~~~---~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQA-ACLRFEQ---RGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHh---CCCcEEEeeH
Confidence 5688999999999985333 3333322 2345766653
No 299
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.78 E-value=0.24 Score=49.43 Aligned_cols=50 Identities=24% Similarity=0.148 Sum_probs=38.5
Q ss_pred EEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcc
Q 011884 28 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 28 li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 79 (475)
.|.|-.|||||.+..+-+......+ ++.+++|.+-|+.|+.++.+...++
T Consensus 180 rIrGLAGSGKT~~La~Kaa~lh~kn--Pd~~I~~Tfftk~L~s~~r~lv~~F 229 (660)
T COG3972 180 RIRGLAGSGKTELLAHKAAELHSKN--PDSRIAFTFFTKILASTMRTLVPEF 229 (660)
T ss_pred hhhcccCCCchhHHHHHHHHHhcCC--CCceEEEEeehHHHHHHHHHHHHHH
Confidence 6788999999987666555444333 6779999999999999987766554
No 300
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.78 E-value=0.095 Score=55.17 Aligned_cols=36 Identities=19% Similarity=0.064 Sum_probs=25.5
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALP 44 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~ 44 (475)
+|..+++.+.+.+.++ +-+|++||.|+|||.++.+.
T Consensus 20 GQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~l 58 (618)
T PRK14951 20 GQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRIL 58 (618)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 5777666555555555 23699999999999876553
No 301
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.77 E-value=0.27 Score=49.65 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=24.2
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
+..+++.||||+|||++....+....... .+.+|.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY--GKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEE
Confidence 56789999999999987665444332111 233566554
No 302
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.77 E-value=0.058 Score=50.46 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=30.4
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEE--------cccHHHHHH
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV--------LPTRDLALQ 71 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil--------~Pt~~L~~q 71 (475)
.=+|+.||||||||.+ +.+++.++.+.... .+|-+ .+.++|++|
T Consensus 126 GLILVTGpTGSGKSTT-lAamId~iN~~~~~--HIlTIEDPIE~vh~skkslI~Q 177 (353)
T COG2805 126 GLILVTGPTGSGKSTT-LAAMIDYINKHKAK--HILTIEDPIEYVHESKKSLINQ 177 (353)
T ss_pred ceEEEeCCCCCcHHHH-HHHHHHHHhccCCc--ceEEecCchHhhhcchHhhhhH
Confidence 3488999999999964 67789888776422 23322 356677777
No 303
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.75 E-value=0.67 Score=48.75 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=38.0
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 79 (475)
+-.++.+|=|.|||.+..+.+...+ .. .+.+|++.+|...-+.++++++++.
T Consensus 188 ~~tV~taPRqrGKS~iVgi~l~~La-~f--~Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 188 CYTAATVPRRCGKTTIMAIILAAMI-SF--LEIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred cceEEEeccCCCcHHHHHHHHHHHH-Hh--cCCeEEEECCChhhHHHHHHHHHHH
Confidence 4567889999999987655444333 21 2457999999999999987775554
No 304
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.69 E-value=0.12 Score=53.98 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=24.6
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALP 44 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~ 44 (475)
+|..+...+...+..+ +.+|++||.|+|||..+...
T Consensus 20 GQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 20 GQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 4666655555554444 44889999999999866553
No 305
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.66 E-value=0.69 Score=48.47 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=39.3
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcc
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 79 (475)
.+-.++..|==.|||.... +++..+... ..+.++++.+|.+..++.++++++..
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s-~~Gi~IgytAH~~~ts~~vF~eI~~~ 307 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALAT-FRGIKIGYTAHIRKATEPVFEEIGAR 307 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHh-CCCCEEEEEcCcHHHHHHHHHHHHHH
Confidence 3567888999999998655 444433322 24668999999999999988885443
No 306
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.63 E-value=0.094 Score=54.95 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=23.1
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALP 44 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~ 44 (475)
+|..+.+.+.+.+.++ +-.|++||.|+|||.++-..
T Consensus 20 Gq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 20 GQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4555544444444443 34788999999999866553
No 307
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.62 E-value=0.14 Score=50.54 Aligned_cols=35 Identities=20% Similarity=0.113 Sum_probs=22.9
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~ 43 (475)
+|.++++.+...+.++ +.++++||+|+|||..+..
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~ 55 (355)
T TIGR02397 18 GQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARI 55 (355)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 4555555544444444 3478999999999975543
No 308
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.61 E-value=0.23 Score=52.80 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=43.7
Q ss_pred ccchhhhhhhhhcCCCCCCC-cEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 6 LFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~-~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
.+.-|.++++.+...+..+. -+++.|.=|-|||.+.=+++ ..+.... ...+++|.+|+.+-++.+
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~-~~~~~~~-~~~~iiVTAP~~~nv~~L 277 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIAL-AAAARLA-GSVRIIVTAPTPANVQTL 277 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHH-HHHHHhc-CCceEEEeCCCHHHHHHH
Confidence 35667777665555444444 68889999999997665544 3232221 145799999999977774
No 309
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.53 E-value=0.17 Score=51.21 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.6
Q ss_pred CcEEEECCCCCchhHHhHH
Q 011884 25 RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~ 43 (475)
.++++.||+|+|||..+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4799999999999975543
No 310
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.48 E-value=0.12 Score=54.54 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=25.8
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALP 44 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~ 44 (475)
+|..+...+...+.++ +..|++||.|+|||.++...
T Consensus 20 GQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~l 58 (620)
T PRK14954 20 AQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVF 58 (620)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHH
Confidence 5666666555555554 34889999999999876553
No 311
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.44 E-value=0.2 Score=48.40 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=32.1
Q ss_pred cccchhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHH
Q 011884 5 SLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~ 43 (475)
.++|||...|+.+...+.++ +-.++.||.|.||+..+..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~ 44 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL 44 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 46899999999988877666 3589999999999976544
No 312
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.43 E-value=0.22 Score=46.22 Aligned_cols=54 Identities=13% Similarity=-0.027 Sum_probs=37.5
Q ss_pred hhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc---ccHHHHHHH
Q 011884 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL---PTRDLALQV 72 (475)
Q Consensus 16 ~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~---Pt~~L~~q~ 72 (475)
.++..+..|+-++|.|++|+|||..++-.+...+.+. +.++++++ |...+...+
T Consensus 5 ~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~---g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 5 NLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQ---GKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred hhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCceEEEeCCCCHHHHHHHH
Confidence 3445566778899999999999986665555554432 45688888 555666654
No 313
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.43 E-value=0.34 Score=51.78 Aligned_cols=91 Identities=10% Similarity=0.120 Sum_probs=73.6
Q ss_pred CCCcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC
Q 011884 310 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 387 (475)
Q Consensus 310 ~~~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~ 387 (475)
...|.+...+++.+. .+.++||.+|-.....++.+.++.+. +.++..+|++++..+|.+...+...|+.+|+|+|.
T Consensus 227 GSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rF--g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 227 GSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARF--GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHh--CCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 445666666666544 57799999999999999999998865 38899999999999999999999999999999998
Q ss_pred CcccCCCCCCCcEEEE
Q 011884 388 AMTRGMDVEGVNNVVN 403 (475)
Q Consensus 388 ~~~~GiDip~~~~Vv~ 403 (475)
..- -.-++++..||+
T Consensus 305 SAl-F~Pf~~LGLIIv 319 (730)
T COG1198 305 SAL-FLPFKNLGLIIV 319 (730)
T ss_pred hhh-cCchhhccEEEE
Confidence 632 345556777765
No 314
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.38 E-value=0.095 Score=50.91 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=28.8
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
+.++++.||||+|||..+.. +...+... +..|+++. ...+..++
T Consensus 183 ~~~Lll~G~~GtGKThLa~a-Ia~~l~~~---g~~V~y~t-~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNC-IAKELLDR---GKSVIYRT-ADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHH-HHHHHHHC---CCeEEEEE-HHHHHHHH
Confidence 47899999999999986544 44444332 33466554 45666664
No 315
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.37 E-value=0.29 Score=50.15 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=34.7
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhh--hccccceEEEcccHHHHHHH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~--~~~~~~vlil~Pt~~L~~q~ 72 (475)
+.-++++|..|||||.+++-=....+... ...+..||++.|.+...+-+
T Consensus 226 ~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYi 276 (747)
T COG3973 226 NKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYI 276 (747)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHH
Confidence 45688999999999998765433333322 12334599999999988773
No 316
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.35 E-value=0.32 Score=49.56 Aligned_cols=48 Identities=17% Similarity=0.012 Sum_probs=31.4
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
.+..+.-+++.|++|+|||...+..+.... . .+.+++|+.-.. -..|+
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~---~g~~vlYvs~Ee-s~~qi 123 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLA-A---AGGKVLYVSGEE-SASQI 123 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHH-h---cCCeEEEEEccc-cHHHH
Confidence 444567789999999999986655444332 1 244788888543 34564
No 317
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.31 E-value=0.09 Score=54.69 Aligned_cols=36 Identities=17% Similarity=0.032 Sum_probs=24.1
Q ss_pred hhhhhhhhhcCCCCCC--Cc-EEEECCCCCchhHHhHHH
Q 011884 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALP 44 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~li~a~tGsGKT~~~~~~ 44 (475)
+|..+++.+...+.++ .+ .|+.||.|+|||.++...
T Consensus 20 Gq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~l 58 (527)
T PRK14969 20 GQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARIL 58 (527)
T ss_pred CcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHH
Confidence 4566555554444444 23 689999999999876553
No 318
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=93.29 E-value=0.27 Score=45.50 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=30.6
Q ss_pred CCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchH
Q 011884 166 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 201 (475)
Q Consensus 166 ~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H 201 (475)
..+|.||||+++..++... .+.++++.+||+|--|
T Consensus 177 ~~~i~vGTP~Rl~kLle~~-~L~l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 177 RVHIAVGTPGRLSKLLENG-ALSLSNLKRIVLDWSY 211 (252)
T ss_pred CceEEEeChHHHHHHHHcC-CCCcccCeEEEEcCCc
Confidence 4589999999999999774 4888999999999876
No 319
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.29 E-value=0.4 Score=51.46 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=18.5
Q ss_pred CCcEEEECCCCCchhHHhHHHHHH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQ 47 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~ 47 (475)
+.-+++.||||+|||++....+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 456889999999999876654443
No 320
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.26 E-value=0.39 Score=47.53 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=29.7
Q ss_pred CCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHH
Q 011884 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q 71 (475)
+..|.-+++.|++|+|||...+..+.. +.. .+.+++|+.-... ..|
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~-~a~---~g~~VlYvs~EEs-~~q 124 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAAR-LAK---RGGKVLYVSGEES-PEQ 124 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHH-HHh---cCCeEEEEECCcC-HHH
Confidence 444567899999999999866554433 222 2347888875433 455
No 321
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=93.26 E-value=2.6 Score=47.01 Aligned_cols=79 Identities=10% Similarity=0.253 Sum_probs=68.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-CcccCCCCCCCcEEE
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 402 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-~~~~GiDip~~~~Vv 402 (475)
.+.++.|.+||--.|++=++-++++. ...+++..++.=.+..+..++++..++|+.+|+|+|. .++.+|-+.++..+|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 56799999999988888888887763 5678999998888899999999999999999999998 577788888888877
Q ss_pred E
Q 011884 403 N 403 (475)
Q Consensus 403 ~ 403 (475)
+
T Consensus 722 I 722 (1139)
T COG1197 722 I 722 (1139)
T ss_pred E
Confidence 5
No 322
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.25 E-value=0.16 Score=46.55 Aligned_cols=55 Identities=20% Similarity=0.029 Sum_probs=34.3
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhc
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
.+-.|..++|.|++|+|||..++-.+.+.+.+. +.++++++-... ..++.+.++.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~---ge~vlyvs~ee~-~~~l~~~~~s 69 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNF---GEKVLYVSFEEP-PEELIENMKS 69 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH---T--EEEEESSS--HHHHHHHHHT
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhc---CCcEEEEEecCC-HHHHHHHHHH
Confidence 444578899999999999987666565555541 336888874322 4554444433
No 323
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.18 Score=49.15 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=15.0
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
+++++.||+|+|||.++
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 78999999999999643
No 324
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.20 E-value=0.23 Score=52.47 Aligned_cols=36 Identities=22% Similarity=0.093 Sum_probs=24.8
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALP 44 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~ 44 (475)
+|..+...+...+.++ +.+|++||.|+|||.++...
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHH
Confidence 5666666555555554 33689999999999866553
No 325
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=0.17 Score=49.02 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=30.2
Q ss_pred cCCCCCC-CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 18 IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 18 ~~~~~~~-~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
++.+..- +.+|+.||+|+|||+.+=. +.. .+....|=+.+-.|+..|
T Consensus 238 F~GirrPWkgvLm~GPPGTGKTlLAKA-----vAT---Ec~tTFFNVSsstltSKw 285 (491)
T KOG0738|consen 238 FKGIRRPWKGVLMVGPPGTGKTLLAKA-----VAT---ECGTTFFNVSSSTLTSKW 285 (491)
T ss_pred HhhcccccceeeeeCCCCCcHHHHHHH-----HHH---hhcCeEEEechhhhhhhh
Confidence 3334333 6799999999999974321 111 244677777777777663
No 326
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.08 E-value=0.29 Score=48.04 Aligned_cols=37 Identities=22% Similarity=0.100 Sum_probs=24.3
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
.+..+++.||+|+|||.+....+.. +... +.+|.+++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~-l~~~---g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ-LLKQ---NRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHHc---CCeEEEEe
Confidence 3566889999999999876665543 3222 33565554
No 327
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.07 E-value=0.14 Score=47.41 Aligned_cols=52 Identities=13% Similarity=0.041 Sum_probs=34.5
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhh
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 76 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~ 76 (475)
.+..|..++|.||+|+|||..++-.+...+. .+.+++|++-. +-..|+.+.+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~----~ge~~lyvs~e-e~~~~i~~~~ 68 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ----MGEPGIYVALE-EHPVQVRRNM 68 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH----cCCcEEEEEee-CCHHHHHHHH
Confidence 4556788999999999999866555555442 34468888843 3355544443
No 328
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.05 E-value=0.057 Score=50.89 Aligned_cols=38 Identities=16% Similarity=0.022 Sum_probs=30.1
Q ss_pred ccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHH
Q 011884 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~ 43 (475)
.++...+..+.++..+..+.++++.||+|+|||..+..
T Consensus 3 ~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 3 ETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 35566667777777777889999999999999986544
No 329
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.03 E-value=0.099 Score=52.65 Aligned_cols=43 Identities=26% Similarity=0.326 Sum_probs=29.5
Q ss_pred cchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhh
Q 011884 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 52 (475)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~ 52 (475)
.+.|.+.+..++. ....=+|+.||||||||.+ +..++..+...
T Consensus 243 ~~~~~~~~~~~~~--~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLN--RPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHh--CCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 6667666655554 1234488899999999974 56677776654
No 330
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.99 E-value=0.11 Score=54.80 Aligned_cols=35 Identities=17% Similarity=0.043 Sum_probs=24.0
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~ 43 (475)
+|..+.+.+...+.++ +-+|++||.|+|||.++.+
T Consensus 20 Gq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 20 GQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARI 57 (576)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 4555555555555555 3368999999999987655
No 331
>PRK05973 replicative DNA helicase; Provisional
Probab=92.91 E-value=0.18 Score=46.44 Aligned_cols=44 Identities=14% Similarity=0.016 Sum_probs=32.2
Q ss_pred hcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 17 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 17 ~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
+...+..|+-++|.|++|+|||..++..+.+.+.+ +.+++|++-
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~----Ge~vlyfSl 100 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS----GRTGVFFTL 100 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc----CCeEEEEEE
Confidence 45667778889999999999998776655554432 446888873
No 332
>PRK12377 putative replication protein; Provisional
Probab=92.78 E-value=0.16 Score=47.27 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=28.7
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhh
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNS 74 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~ 74 (475)
..+++.||+|+|||..+.. +...+... +..|+++ +..+|..++..
T Consensus 102 ~~l~l~G~~GtGKThLa~A-Ia~~l~~~---g~~v~~i-~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAA-IGNRLLAK---GRSVIVV-TVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHc---CCCeEEE-EHHHHHHHHHH
Confidence 5799999999999986544 44444332 3345444 44577776543
No 333
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.76 E-value=0.11 Score=42.85 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=26.8
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 69 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~ 69 (475)
+..+++.||+|+|||..+.. ++..+... ...++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~---~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPP---GGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCC---CCCEEEECCEEccc
Confidence 46789999999999986544 33322221 12478887765543
No 334
>PRK09183 transposase/IS protein; Provisional
Probab=92.75 E-value=0.32 Score=45.65 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=30.6
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
.+..+.++++.||+|+|||..+...+.... . .+..|+++. ...+..++
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~---~G~~v~~~~-~~~l~~~l 145 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIALGYEAV-R---AGIKVRFTT-AADLLLQL 145 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHHHHHHHH-H---cCCeEEEEe-HHHHHHHH
Confidence 355678999999999999986654433322 2 234566654 34566553
No 335
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=92.62 E-value=0.42 Score=49.69 Aligned_cols=72 Identities=18% Similarity=0.389 Sum_probs=57.7
Q ss_pred EEEEcCChHHHHHHHHHHhhcCCC--ceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-----CcccC-CCCCCCcE
Q 011884 329 CIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRG-MDVEGVNN 400 (475)
Q Consensus 329 ~lvf~~s~~~~~~l~~~l~~~~~~--~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-----~~~~G-iDip~~~~ 400 (475)
+||++||++.|.++++.+...... +..+..++||++...+. ..++.| .+|||+|+ .+..| +|+..+..
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH---HHHhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999999999887643 57789999998775544 555556 99999996 45566 88888998
Q ss_pred EEEe
Q 011884 401 VVNY 404 (475)
Q Consensus 401 Vv~~ 404 (475)
+|.-
T Consensus 178 lVlD 181 (513)
T COG0513 178 LVLD 181 (513)
T ss_pred EEec
Confidence 8763
No 336
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.46 E-value=0.21 Score=44.28 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=27.5
Q ss_pred ccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHH
Q 011884 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 48 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~ 48 (475)
.++.|.+.+...+. .+..+++.||||||||... ..++..
T Consensus 10 ~~~~~~~~l~~~v~---~g~~i~I~G~tGSGKTTll-~aL~~~ 48 (186)
T cd01130 10 FSPLQAAYLWLAVE---ARKNILISGGTGSGKTTLL-NALLAF 48 (186)
T ss_pred CCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHHH-HHHHhh
Confidence 45667666665554 5789999999999999743 334443
No 337
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=92.44 E-value=0.7 Score=48.28 Aligned_cols=93 Identities=15% Similarity=0.271 Sum_probs=73.1
Q ss_pred CCcHHHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC
Q 011884 311 KLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 388 (475)
Q Consensus 311 ~~~~~~l~~~l~~~-~~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~ 388 (475)
......+..++.-. .+.++..-+||-=.|++-++.+.++- +.++.+.++.|.+....|.++++...+|+.+++|+|.+
T Consensus 295 GKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA 374 (677)
T COG1200 295 GKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA 374 (677)
T ss_pred CHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch
Confidence 33344444444433 56799999999877777776666653 34689999999999999999999999999999999996
Q ss_pred -cccCCCCCCCcEEEE
Q 011884 389 -MTRGMDVEGVNNVVN 403 (475)
Q Consensus 389 -~~~GiDip~~~~Vv~ 403 (475)
+.+.+++.++-.||+
T Consensus 375 LiQd~V~F~~LgLVIi 390 (677)
T COG1200 375 LIQDKVEFHNLGLVII 390 (677)
T ss_pred hhhcceeecceeEEEE
Confidence 567899998888775
No 338
>PRK10867 signal recognition particle protein; Provisional
Probab=92.40 E-value=1.4 Score=44.43 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=25.4
Q ss_pred cEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc--ccHHH
Q 011884 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDL 68 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~--Pt~~L 68 (475)
-++++|++|+|||+++...+... ... .+.+|+++. +.|.-
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l-~~~--~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYL-KKK--KKKKVLLVAADVYRPA 143 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHh--cCCcEEEEEccccchH
Confidence 47889999999998776655433 222 134566665 44443
No 339
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.37 E-value=0.6 Score=47.96 Aligned_cols=41 Identities=20% Similarity=0.096 Sum_probs=25.7
Q ss_pred CCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
+..++.+.+.||||+|||..+...+....... .+.+|.++.
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~--~gkkVaLId 387 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQH--APRDVALVT 387 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCceEEEe
Confidence 34567899999999999987655444333322 123455554
No 340
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.34 E-value=0.19 Score=47.28 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=25.8
Q ss_pred cchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHH
Q 011884 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 49 (475)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l 49 (475)
.+.|.+.+..++. ..+..++|.||||||||... .+++..+
T Consensus 65 ~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 4556666554443 12356899999999999754 4455544
No 341
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.31 E-value=0.33 Score=39.63 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=24.5
Q ss_pred EEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 28 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 28 li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
.+-|+||+|||++.-+ +.+++...+.+..-|....+
T Consensus 57 SfHG~tGtGKn~v~~l-iA~~ly~~G~~S~~V~~f~~ 92 (127)
T PF06309_consen 57 SFHGWTGTGKNFVSRL-IAEHLYKSGMKSPFVHQFIA 92 (127)
T ss_pred EeecCCCCcHHHHHHH-HHHHHHhcccCCCceeeecc
Confidence 3689999999998877 44555555555555555443
No 342
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.24 E-value=0.19 Score=45.10 Aligned_cols=36 Identities=19% Similarity=0.436 Sum_probs=22.6
Q ss_pred EEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEccc
Q 011884 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (475)
Q Consensus 27 ~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt 65 (475)
++|+||||||||+.. ..++..+... .+.+++.+-..
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~--~~~~i~t~e~~ 39 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKN--KTHHILTIEDP 39 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhc--CCcEEEEEcCC
Confidence 689999999999754 4455554432 23345555543
No 343
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.23 E-value=1.4 Score=44.49 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=22.9
Q ss_pred cEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
-++++|++|+|||+++...+....... +.+|+++.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~---g~kV~lV~ 135 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQ---GKKVLLVA 135 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhC---CCeEEEEe
Confidence 488899999999998766554422122 33566554
No 344
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.21 E-value=0.28 Score=46.07 Aligned_cols=49 Identities=20% Similarity=0.078 Sum_probs=32.6
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc---ccHHHHHHH
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL---PTRDLALQV 72 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~---Pt~~L~~q~ 72 (475)
.+..|.-++|.|++|+|||..++-.+.+.+. .+.+++|++ |...+.+++
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~----~Ge~vlyis~Ee~~~~~~~~l 83 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQAS----RGNPVLFVTVESPANFVYTSL 83 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHh----CCCcEEEEEecCCchHHHHHH
Confidence 4445778999999999999876655554432 345788887 334444443
No 345
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.21 E-value=0.11 Score=59.49 Aligned_cols=95 Identities=23% Similarity=0.397 Sum_probs=78.3
Q ss_pred eEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccC-----------HHHHHHHHHHHHcCCeEEEEEcCCcccCCCCC
Q 011884 328 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-----------QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 396 (475)
Q Consensus 328 ~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~-----------~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip 396 (475)
-.++|++.+..+....+.+.+... ..+.++.|.+. ...+++++..|.....++|++|.++.+|+|++
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~ 371 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFS--NDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVP 371 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhc--cCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchh
Confidence 558999999999999998887653 23333555443 23467889999999999999999999999999
Q ss_pred CCcEEEEecCCCCHHHHHHHhhhccccC
Q 011884 397 GVNNVVNYDKPAYIKTYIHRAGRTARAG 424 (475)
Q Consensus 397 ~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~ 424 (475)
.++.|+.++.|-....|+|..||+-+..
T Consensus 372 ~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 372 KCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhhheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999999976654
No 346
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.19 E-value=0.14 Score=50.09 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=29.4
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHH
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 69 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~ 69 (475)
.+.+++|+||||||||.. +.+++..+. ...+++.+=.+.+|.
T Consensus 161 ~~~nilI~G~tGSGKTTl-l~aLl~~i~----~~~rivtiEd~~El~ 202 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTM-SKTLISAIP----PQERLITIEDTLELV 202 (344)
T ss_pred cCCeEEEECCCCccHHHH-HHHHHcccC----CCCCEEEECCCcccc
Confidence 568999999999999963 344554432 234677777777764
No 347
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.18 E-value=0.12 Score=54.19 Aligned_cols=37 Identities=16% Similarity=-0.025 Sum_probs=23.4
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~~ 45 (475)
.|..+...+...+.++ ..+|+.||.|+|||.++.+.+
T Consensus 20 GQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 20 GQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred CCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 3444444333334344 458899999999998776543
No 348
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.17 E-value=0.27 Score=49.10 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=16.0
Q ss_pred CcEEEECCCCCchhHHhHHH
Q 011884 25 RDLCINSPTGSGKTLSYALP 44 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~ 44 (475)
+.+|+.||.|+|||..+...
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~l 56 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAF 56 (394)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 34899999999999866553
No 349
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.13 E-value=0.32 Score=49.60 Aligned_cols=37 Identities=22% Similarity=0.064 Sum_probs=25.2
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~~ 45 (475)
+|..++..+...+..+ +.+|++||+|+|||.++...+
T Consensus 21 Gq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 21 GQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred CcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 4666655555555454 347899999999998765533
No 350
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=92.08 E-value=0.38 Score=45.27 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=26.4
Q ss_pred EEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHH
Q 011884 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 69 (475)
Q Consensus 27 ~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~ 69 (475)
.+|.||||+||+-..-..+-..+.+. ..-.|+|++|++..+
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P--~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQP--PPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccC--CCCceEEECCCCCCC
Confidence 67899999999963322233333332 233699999987654
No 351
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.08 E-value=1.6 Score=44.66 Aligned_cols=71 Identities=18% Similarity=0.068 Sum_probs=50.7
Q ss_pred cccchhhhhhhhhcCCCCCC------CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhh
Q 011884 5 SLFPVQVAVWQETIGPGLFE------RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA 75 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~------~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~ 75 (475)
.+-|||.-.+-.++.....+ ..++|..|=+-|||..+...+...+.-....+..+.+++|+...+.+.+..
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ 137 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNP 137 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHH
Confidence 57899998887777554443 348999999999998766444443333224567899999999888885443
No 352
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.06 E-value=0.85 Score=46.57 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=19.2
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHH
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQ 47 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~ 47 (475)
.+.-+++.||||+|||++....+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHH
Confidence 3566889999999999877664443
No 353
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=91.96 E-value=0.056 Score=47.21 Aligned_cols=45 Identities=20% Similarity=0.339 Sum_probs=23.3
Q ss_pred EEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhh
Q 011884 28 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA 75 (475)
Q Consensus 28 li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~ 75 (475)
+|.|+-|-|||.+.-++ +..+...+ ..++++.+|+..-++.+++.
T Consensus 1 VltA~RGRGKSa~lGl~-~a~l~~~~--~~~I~vtAP~~~~~~~lf~~ 45 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLA-AAALIQKG--KIRILVTAPSPENVQTLFEF 45 (177)
T ss_dssp -EEE-TTSSHHHHHHHC-CCCSSS-------EEEE-SS--S-HHHHHC
T ss_pred CccCCCCCCHHHHHHHH-HHHHHHhc--CceEEEecCCHHHHHHHHHH
Confidence 57899999999754443 33333322 24699999999977775443
No 354
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.94 E-value=0.72 Score=46.04 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=23.3
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
.-+++.||+|+|||+++...+...... .+.+|.++.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~---~G~~V~Lit 259 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLH---MGKSVSLYT 259 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh---cCCeEEEec
Confidence 347889999999999876655443222 233555554
No 355
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=0.12 Score=48.67 Aligned_cols=18 Identities=44% Similarity=0.663 Sum_probs=15.6
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
..|+++.||||||||+.+
T Consensus 97 KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eccEEEECCCCCcHHHHH
Confidence 478999999999999844
No 356
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.91 E-value=0.35 Score=49.78 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=24.7
Q ss_pred hhhhhhhhhcCCCCCC--Cc-EEEECCCCCchhHHhHHH
Q 011884 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALP 44 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~li~a~tGsGKT~~~~~~ 44 (475)
+|..++..+.+.+.++ .+ .+++||.|+|||.++.+.
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~l 58 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARIL 58 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 5666666555555554 23 578999999999866553
No 357
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=91.88 E-value=0.33 Score=47.01 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=19.0
Q ss_pred hhhhhhhhhcCCCCCC--CcEEE-ECCCCCchhHHh
Q 011884 9 VQVAVWQETIGPGLFE--RDLCI-NSPTGSGKTLSY 41 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~~li-~a~tGsGKT~~~ 41 (475)
+|......+...+.++ .++++ .||+|+|||..+
T Consensus 25 ~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 25 LPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHH
Confidence 3444433333333344 24444 899999999754
No 358
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.85 E-value=0.1 Score=54.62 Aligned_cols=63 Identities=19% Similarity=0.074 Sum_probs=45.4
Q ss_pred cccchhhhhhhhhcCCCCCC--CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhh
Q 011884 5 SLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNS 74 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~--~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~ 74 (475)
..+|+|.+.+. .+... +.+.+..++-+|||.+.+..+...+... ...++++.||..++.++.+
T Consensus 16 ~~~Py~~eimd----~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~---P~~~l~v~Pt~~~a~~~~~ 80 (557)
T PF05876_consen 16 DRTPYLREIMD----ALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD---PGPMLYVQPTDDAAKDFSK 80 (557)
T ss_pred CCChhHHHHHH----hcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC---CCCEEEEEEcHHHHHHHHH
Confidence 56899988644 33333 6799999999999986555444433332 3469999999999998754
No 359
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.83 E-value=0.94 Score=45.91 Aligned_cols=48 Identities=10% Similarity=-0.110 Sum_probs=32.3
Q ss_pred hhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 13 a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
.+..++..+..|.-++|.|+||+|||..++..+....... +.+|+|++
T Consensus 183 ~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~---g~~v~~fS 230 (421)
T TIGR03600 183 KLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALRE---GKPVLFFS 230 (421)
T ss_pred hHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC---CCcEEEEE
Confidence 3445556666677899999999999986655444433222 34688877
No 360
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.79 E-value=0.58 Score=46.33 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=19.2
Q ss_pred cCCCCCCCcEEEECCCCCchhHHh
Q 011884 18 IGPGLFERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 18 ~~~~~~~~~~li~a~tGsGKT~~~ 41 (475)
+-.+-.|+.++|.||+|+|||..+
T Consensus 162 ~~pig~Gq~~~IvG~~g~GKTtL~ 185 (415)
T TIGR00767 162 FAPIGKGQRGLIVAPPKAGKTVLL 185 (415)
T ss_pred EEEeCCCCEEEEECCCCCChhHHH
Confidence 334556899999999999999743
No 361
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.75 E-value=0.35 Score=45.39 Aligned_cols=47 Identities=17% Similarity=-0.000 Sum_probs=32.3
Q ss_pred hhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 15 ~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
..++..+..|.=++|.|+||.|||..++-.+...+... +..|+|++.
T Consensus 10 D~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~---~~~vly~Sl 56 (259)
T PF03796_consen 10 DRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNG---GYPVLYFSL 56 (259)
T ss_dssp HHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT---SSEEEEEES
T ss_pred HHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhc---CCeEEEEcC
Confidence 34455555677799999999999987766666655443 346888884
No 362
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=0.42 Score=45.99 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=15.4
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
-+-+|+.||+|+|||+.+
T Consensus 185 PKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 477999999999999743
No 363
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.64 E-value=0.34 Score=51.78 Aligned_cols=36 Identities=19% Similarity=0.066 Sum_probs=25.3
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALP 44 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~ 44 (475)
+|..+++.+...+..+ +-.|++||.|+|||.++...
T Consensus 22 GQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 22 GQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHH
Confidence 5666666555555555 23689999999999876553
No 364
>PRK07952 DNA replication protein DnaC; Validated
Probab=91.60 E-value=0.31 Score=45.21 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=34.2
Q ss_pred cchhhhhhhhhcC---CCCCC-CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 7 FPVQVAVWQETIG---PGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 7 ~~~Q~~a~~~~~~---~~~~~-~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
.+.|..|+..+.. ....+ ..+++.|++|+|||..+.. +...+... +..|+++ +...+...+
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~a-ia~~l~~~---g~~v~~i-t~~~l~~~l 142 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAA-ICNELLLR---GKSVLII-TVADIMSAM 142 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH-HHHHHHhc---CCeEEEE-EHHHHHHHH
Confidence 3456555444332 22222 4799999999999986544 44444332 3346555 445555553
No 365
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.60 E-value=2.3 Score=42.78 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=56.8
Q ss_pred CCeE-EEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC--Ccc----cCCCCCC
Q 011884 326 EEKC-IVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD--AMT----RGMDVEG 397 (475)
Q Consensus 326 ~~~~-lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~--~~~----~GiDip~ 397 (475)
.+++ +|.+||++.|.++...-+.++ -.++.+...|||++..+....++ ....++|||+ ++. .++|+..
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhccccee
Confidence 3454 678899999999988777773 45689999999999987766655 3578999996 222 4789988
Q ss_pred CcEEEE
Q 011884 398 VNNVVN 403 (475)
Q Consensus 398 ~~~Vv~ 403 (475)
++++|+
T Consensus 371 vS~LV~ 376 (731)
T KOG0339|consen 371 VSYLVL 376 (731)
T ss_pred eeEEEE
Confidence 888775
No 366
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.43 E-value=0.16 Score=56.07 Aligned_cols=36 Identities=19% Similarity=0.008 Sum_probs=24.5
Q ss_pred chhhhhhhhhcCCCCC--------C---CcEEEECCCCCchhHHhHH
Q 011884 8 PVQVAVWQETIGPGLF--------E---RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 8 ~~Q~~a~~~~~~~~~~--------~---~~~li~a~tGsGKT~~~~~ 43 (475)
-+|.+|+..+...+.. + ..+++.||||+|||..+-.
T Consensus 512 ~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~ 558 (821)
T CHL00095 512 IGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKA 558 (821)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHH
Confidence 3677777766554431 1 2478999999999975533
No 367
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.41 E-value=0.4 Score=50.81 Aligned_cols=36 Identities=22% Similarity=0.168 Sum_probs=23.6
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALP 44 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~ 44 (475)
+|..+...+...+..+ ..+|+.||.|+|||.++...
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHH
Confidence 4555544444433343 45799999999999876553
No 368
>PRK10436 hypothetical protein; Provisional
Probab=91.41 E-value=0.22 Score=50.64 Aligned_cols=42 Identities=31% Similarity=0.502 Sum_probs=27.2
Q ss_pred cchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhh
Q 011884 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 51 (475)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~ 51 (475)
.+.|.+.+..++. ..+.-++++||||||||.+. .+++..+..
T Consensus 203 ~~~~~~~l~~~~~--~~~GliLvtGpTGSGKTTtL-~a~l~~~~~ 244 (462)
T PRK10436 203 TPAQLAQFRQALQ--QPQGLILVTGPTGSGKTVTL-YSALQTLNT 244 (462)
T ss_pred CHHHHHHHHHHHH--hcCCeEEEECCCCCChHHHH-HHHHHhhCC
Confidence 4455555554443 13456899999999999754 556666543
No 369
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.38 E-value=0.26 Score=48.48 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=20.4
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHh
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLS 50 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~ 50 (475)
.+.-++|+||||||||... .+++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4577999999999999743 55666554
No 370
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.37 E-value=0.17 Score=49.32 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=27.1
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHH
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L 68 (475)
.+.+++|+|+||||||. ++.+++..+. ...+++.+=-+.++
T Consensus 159 ~~~nili~G~tgSGKTT-ll~aL~~~ip----~~~ri~tiEd~~El 199 (332)
T PRK13900 159 SKKNIIISGGTSTGKTT-FTNAALREIP----AIERLITVEDAREI 199 (332)
T ss_pred cCCcEEEECCCCCCHHH-HHHHHHhhCC----CCCeEEEecCCCcc
Confidence 46899999999999996 3455555443 23356665444444
No 371
>PF12846 AAA_10: AAA-like domain
Probab=91.37 E-value=0.26 Score=47.09 Aligned_cols=42 Identities=29% Similarity=0.357 Sum_probs=28.6
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 69 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~ 69 (475)
+.+++|.|+||+|||.... .++..+... +..++++=|..+..
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~---g~~~~i~D~~g~~~ 42 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRR---GPRVVIFDPKGDYS 42 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHc---CCCEEEEcCCchHH
Confidence 3578999999999997665 444444433 45677876765543
No 372
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.29 E-value=2.7 Score=42.33 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=23.0
Q ss_pred cEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
-++++|++|+|||+++...+. .+.. .+.+|++++
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~---~G~kV~lV~ 135 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQR---KGFKPCLVC 135 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH---CCCCEEEEc
Confidence 478899999999987655443 3332 244677665
No 373
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=91.13 E-value=0.28 Score=44.20 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=23.6
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEccc
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt 65 (475)
...+++|.|+||||||......+...+.........+.++=|.
T Consensus 37 ~~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 37 KNPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp GS-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred CCceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 3468999999999999866554555444332334444444454
No 374
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=91.13 E-value=0.29 Score=44.88 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=26.8
Q ss_pred hhhhhhcCCCCCCC-cEEEECCCCCchhHHhHHHHHHHHh
Q 011884 12 AVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLS 50 (475)
Q Consensus 12 ~a~~~~~~~~~~~~-~~li~a~tGsGKT~~~~~~~~~~l~ 50 (475)
+++..+-..+..++ -+.++|+.|||||.+.- ++++.+.
T Consensus 38 e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~ 76 (269)
T COG3267 38 EALLMLHAAIADGQGILAVTGEVGSGKTVLRR-ALLASLN 76 (269)
T ss_pred HHHHHHHHHHhcCCceEEEEecCCCchhHHHH-HHHHhcC
Confidence 45555566666676 68889999999998766 4555443
No 375
>PRK07004 replicative DNA helicase; Provisional
Probab=91.12 E-value=1.1 Score=45.79 Aligned_cols=46 Identities=11% Similarity=-0.161 Sum_probs=29.4
Q ss_pred hhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 15 ~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
..+...+..|.-++|.|.||+|||..++-.+....... +..|++.+
T Consensus 204 D~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~---~~~v~~fS 249 (460)
T PRK07004 204 DRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEY---GLPVAVFS 249 (460)
T ss_pred cccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHc---CCeEEEEe
Confidence 33444555567789999999999986655444433222 33577776
No 376
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.07 E-value=0.45 Score=51.85 Aligned_cols=36 Identities=17% Similarity=-0.006 Sum_probs=22.9
Q ss_pred hhhhhhhhcCCCCC--CCcEEEECCCCCchhHHhHHHH
Q 011884 10 QVAVWQETIGPGLF--ERDLCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 10 Q~~a~~~~~~~~~~--~~~~li~a~tGsGKT~~~~~~~ 45 (475)
|.+-+..++..+.. ..++++.||+|+|||..+-..+
T Consensus 187 r~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la 224 (731)
T TIGR02639 187 REDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLA 224 (731)
T ss_pred cHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHH
Confidence 44444444443333 3689999999999998654433
No 377
>PRK14701 reverse gyrase; Provisional
Probab=91.05 E-value=0.85 Score=53.64 Aligned_cols=64 Identities=17% Similarity=0.367 Sum_probs=55.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCC---CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 388 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~---~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~ 388 (475)
++.+++|.+||++.+.++++.++.... .+..+..+||+++..++.+.++.+.+|+.+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999999999999988542 2467889999999999999999999999999999974
No 378
>PRK06904 replicative DNA helicase; Validated
Probab=91.03 E-value=1.3 Score=45.38 Aligned_cols=47 Identities=11% Similarity=-0.119 Sum_probs=29.6
Q ss_pred hhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 15 ~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
..+...+..|.=++|.|.||.|||..++-.+....... +..|+|++.
T Consensus 212 D~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~---g~~Vl~fSl 258 (472)
T PRK06904 212 DKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMAS---EKPVLVFSL 258 (472)
T ss_pred HHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhc---CCeEEEEec
Confidence 33444555567788999999999986654444333222 335777763
No 379
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.01 E-value=0.23 Score=47.00 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=28.3
Q ss_pred CCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHH
Q 011884 22 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (475)
Q Consensus 22 ~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L 68 (475)
..+.+++++|+||||||... .+++..+... ..+++.+-.+.++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~---~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE---DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT---TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc---ccceEEeccccce
Confidence 34689999999999999743 5555554332 2467776655554
No 380
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=90.99 E-value=0.96 Score=44.68 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=21.2
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHh
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLS 50 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~ 50 (475)
.+-.|+..+|.||.|+|||..+ ..+...+.
T Consensus 165 PIGkGQR~lIvgppGvGKTTLa-K~Ian~I~ 194 (416)
T PRK09376 165 PIGKGQRGLIVAPPKAGKTVLL-QNIANSIT 194 (416)
T ss_pred ccccCceEEEeCCCCCChhHHH-HHHHHHHH
Confidence 3446899999999999999643 33444443
No 381
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.84 E-value=0.61 Score=46.64 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=15.4
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
.+.+++.||+|+|||..+
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 367999999999999754
No 382
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.82 E-value=0.49 Score=46.20 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=26.9
Q ss_pred ccchhhhhhhhhcCCCCCC--Cc-EEEECCCCCchhHHhHH
Q 011884 6 LFPVQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYAL 43 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~--~~-~li~a~tGsGKT~~~~~ 43 (475)
....|..+++.+...+.++ .+ .|+.||.|+|||..+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~ 47 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALW 47 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHH
Confidence 3345777777666666665 33 69999999999976544
No 383
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.68 E-value=0.51 Score=50.07 Aligned_cols=35 Identities=20% Similarity=0.106 Sum_probs=24.3
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~ 43 (475)
+|..+...+...+.++ +-+|++||.|+|||.++.+
T Consensus 21 Gq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~ 58 (614)
T PRK14971 21 GQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARI 58 (614)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHH
Confidence 4666655555555555 3378999999999985544
No 384
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=90.63 E-value=0.35 Score=42.99 Aligned_cols=60 Identities=23% Similarity=0.081 Sum_probs=35.2
Q ss_pred hhcCCCC-CCCcEEEECCCCCchhHHhHHHHHHHHhhhh------ccccceEEEcccHHHHHHHhhhh
Q 011884 16 ETIGPGL-FERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQVNSAR 76 (475)
Q Consensus 16 ~~~~~~~-~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~------~~~~~vlil~Pt~~L~~q~~~~~ 76 (475)
.+++.+. .|.-.++.||+|+|||...+-.+.+.+.... ..+.+|+++..-.. ..++.+++
T Consensus 23 ~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl 89 (193)
T PF13481_consen 23 WLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRL 89 (193)
T ss_dssp EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHH
T ss_pred eeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHH
Confidence 3455554 4677999999999999877666665553211 13457888876544 55544443
No 385
>PRK06921 hypothetical protein; Provisional
Probab=90.59 E-value=0.42 Score=45.05 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=28.6
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
+..+++.|++|+|||..+.. +...+... .+..|+++.. ..+..++
T Consensus 117 ~~~l~l~G~~G~GKThLa~a-ia~~l~~~--~g~~v~y~~~-~~l~~~l 161 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTA-AANELMRK--KGVPVLYFPF-VEGFGDL 161 (266)
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHhhh--cCceEEEEEH-HHHHHHH
Confidence 57799999999999985543 44444332 1335666654 4555554
No 386
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.59 E-value=0.36 Score=47.39 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=27.5
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 69 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~ 69 (475)
+..++|+||||||||... ..++..+... .+.+++.+-...+..
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~--~~~~i~tiEdp~E~~ 164 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKN--AAGHIITIEDPIEYV 164 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcC--CCCEEEEEcCChhhh
Confidence 567999999999999754 4455555432 233566665444443
No 387
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=90.48 E-value=0.41 Score=50.32 Aligned_cols=63 Identities=25% Similarity=0.083 Sum_probs=45.4
Q ss_pred cchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhh--hccccceEEEcccHHHHHHHh
Q 011884 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTRDLALQVN 73 (475)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~--~~~~~~vlil~Pt~~L~~q~~ 73 (475)
...|..|++..+. ..--+|++|+|+|||++.+.+.-..+.+. ......++++|-|...+.|+.
T Consensus 380 dsSq~~A~qs~lt----yelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~l 444 (1025)
T KOG1807|consen 380 DSSQQFAKQSKLT----YELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYL 444 (1025)
T ss_pred cHHHHHHHHHHhh----hhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHH
Confidence 3457666654433 56789999999999999988655555443 123446999999999999953
No 388
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.42 E-value=0.8 Score=50.92 Aligned_cols=161 Identities=17% Similarity=0.118 Sum_probs=0.0
Q ss_pred hcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhc--------------cccceEEEcccHHHHHHHhhhhhccccc
Q 011884 17 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--------------RCLRALVVLPTRDLALQVNSARCKYCCK 82 (475)
Q Consensus 17 ~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~--------------~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 82 (475)
.......|.+++..-..|.|||..-+...+........ ..+..||++| .++..|
T Consensus 367 ~~~~~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P-~aIl~Q----------- 434 (1394)
T KOG0298|consen 367 CSGDKKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICP-NAILMQ----------- 434 (1394)
T ss_pred hcCCccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECc-HHHHHH-----------
Q ss_pred ccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHh
Q 011884 83 NIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 162 (475)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (475)
|...+....... +++..+.|-.........-..+.
T Consensus 435 ----------------------------W~~EI~kH~~~~-lKv~~Y~Girk~~~~~~~el~~y---------------- 469 (1394)
T KOG0298|consen 435 ----------------------------WFEEIHKHISSL-LKVLLYFGIRKTFWLSPFELLQY---------------- 469 (1394)
T ss_pred ----------------------------HHHHHHHhcccc-ceEEEEechhhhcccCchhhhcc----------------
Q ss_pred hhcCCcEEEeCchHHHHHhhcCCCcccCC-------------------ccEEEEcchHHHHHHHHHhhHHHHHHhccccc
Q 011884 163 LQSAVDILVATPGRLMDHINATRGFTLEH-------------------LCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 223 (475)
Q Consensus 163 ~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~-------------------~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~ 223 (475)
||++||++.|.+-+.......-.. +=-|++|||+.+ +.+-.+..+-+...-+.
T Consensus 470 -----DIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMv-esssS~~a~M~~rL~~i-- 541 (1394)
T KOG0298|consen 470 -----DIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMV-ESSSSAAAEMVRRLHAI-- 541 (1394)
T ss_pred -----CEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhh-cchHHHHHHHHHHhhhh--
Q ss_pred cccccccccccccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccc
Q 011884 224 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 280 (475)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 280 (475)
..=..|+|+-++++++..+
T Consensus 542 --------------------------------------n~W~VTGTPiq~Iddl~~L 560 (1394)
T KOG0298|consen 542 --------------------------------------NRWCVTGTPIQKIDDLFPL 560 (1394)
T ss_pred --------------------------------------ceeeecCCchhhhhhhHHH
No 389
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=90.41 E-value=0.39 Score=47.45 Aligned_cols=27 Identities=33% Similarity=0.213 Sum_probs=20.0
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhh
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSN 51 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~ 51 (475)
+..++|+||||||||.. +.+++..+..
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 45689999999999974 4556665543
No 390
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.40 E-value=0.048 Score=57.80 Aligned_cols=111 Identities=20% Similarity=0.218 Sum_probs=69.3
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhh-----ccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhh
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQ 99 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~-----~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (475)
.-.|+....|-|||...+..++..=.... ......|++||+ ++..||.
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~-------------------------- 205 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWK-------------------------- 205 (674)
T ss_pred ccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHH--------------------------
Confidence 45788999999999877665443222211 134458899996 5566743
Q ss_pred ccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHH
Q 011884 100 FDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 179 (475)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~ 179 (475)
..+.+......+.+.+++|......+ ....+|+++||+.+-.
T Consensus 206 -------------~elek~~~~~~l~v~v~~gr~kd~~e-------------------------l~~~dVVltTy~il~~ 247 (674)
T KOG1001|consen 206 -------------TELEKVTEEDKLSIYVYHGRTKDKSE-------------------------LNSYDVVLTTYDILKN 247 (674)
T ss_pred -------------HHHhccCCccceEEEEecccccccch-------------------------hcCCceEEeeHHHhhc
Confidence 33356666667888888881111111 1235799999998853
Q ss_pred HhhcCCCcccCCccEEEEcchHHHHH
Q 011884 180 HINATRGFTLEHLCYLVVDETDRLLR 205 (475)
Q Consensus 180 ~l~~~~~~~~~~~~~lVvDE~H~l~~ 205 (475)
.. +..-.+-.+|+||+|.+.+
T Consensus 248 ----~~-l~~i~w~Riildea~~ikn 268 (674)
T KOG1001|consen 248 ----SP-LVKIKWLRIVLDEAHTIKN 268 (674)
T ss_pred ----cc-ccceeEEEEEeccccccCC
Confidence 11 1113355799999997643
No 391
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=90.33 E-value=0.41 Score=54.66 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=48.1
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhh-ccccceEEEcccHHHHHHHhhhhhccc
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~-~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
.+.+++|.|-.|||||++...-+++.+...+ ..-..+|+++-|+.-+..|..++.+-+
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L 73 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRL 73 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHH
Confidence 5689999999999999988777888887753 455689999999999999888865544
No 392
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.08 E-value=1.3 Score=44.46 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=18.5
Q ss_pred CCCcEEEECCCCCchhHHhHHHHH
Q 011884 23 FERDLCINSPTGSGKTLSYALPIV 46 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~ 46 (475)
.+..+.+.||||+|||......+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999987654433
No 393
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.08 E-value=0.57 Score=42.90 Aligned_cols=53 Identities=13% Similarity=-0.030 Sum_probs=34.4
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhh
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARC 77 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~ 77 (475)
.+..+.-+++.|++|+|||..++..+...+. .+.++++++.... ..|+.+.+.
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~----~g~~~~y~s~e~~-~~~l~~~~~ 64 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLK----NGEKAMYISLEER-EERILGYAK 64 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----CCCeEEEEECCCC-HHHHHHHHH
Confidence 4445778999999999999866555544443 2446888875443 556544443
No 394
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=90.06 E-value=1.6 Score=45.24 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=38.7
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhh
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 76 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~ 76 (475)
+--+..-|==-|||. ++.|++..+... ..+-++.|+++-+..++-.++|+
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s-~~gI~IGYvAHqKhvs~~Vf~EI 252 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKN-IIGISIGYVAHQKHVSQFVLKEV 252 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHh-hcCceEEEEeeHHHHHHHHHHHH
Confidence 445677899999997 567777777664 46778999999999888776663
No 395
>PRK04328 hypothetical protein; Provisional
Probab=90.00 E-value=0.49 Score=44.19 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=27.6
Q ss_pred CCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
+..|..++|.|++|+|||..++-.+.+.+.+ +.+++|++
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~----ge~~lyis 58 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQM----GEPGVYVA 58 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEE
Confidence 4457889999999999998665545554433 44677776
No 396
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=89.92 E-value=0.79 Score=46.62 Aligned_cols=42 Identities=24% Similarity=0.262 Sum_probs=26.8
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHH
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q 71 (475)
+.+++.||+|+|||..+. ++...+... +.+++++.. ..+..+
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~---~~~v~yi~~-~~f~~~ 183 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES---GGKILYVRS-ELFTEH 183 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc---CCCEEEeeH-HHHHHH
Confidence 568999999999997544 344444332 446777764 344444
No 397
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=89.92 E-value=1.2 Score=43.73 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=26.9
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
.++++.||+|+|||..+.+.+-. -+..+.-+..+.+=+.++
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~-------~~~~f~~~sAv~~gvkdl 89 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGT-------TNAAFEALSAVTSGVKDL 89 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHh-------hCCceEEeccccccHHHH
Confidence 57999999999999866553321 233466666655555553
No 398
>PHA02244 ATPase-like protein
Probab=89.78 E-value=0.3 Score=47.77 Aligned_cols=28 Identities=14% Similarity=0.006 Sum_probs=21.3
Q ss_pred hhhhcCCCCCCCcEEEECCCCCchhHHh
Q 011884 14 WQETIGPGLFERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 14 ~~~~~~~~~~~~~~li~a~tGsGKT~~~ 41 (475)
...+...+..+.++++.||||+|||..+
T Consensus 109 ~~ri~r~l~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 109 TADIAKIVNANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 3344445556789999999999999754
No 399
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.74 E-value=0.41 Score=46.23 Aligned_cols=56 Identities=21% Similarity=0.158 Sum_probs=36.7
Q ss_pred ccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHH
Q 011884 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 69 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~ 69 (475)
+++.|..-+..+ +..+++++++|+||||||. ++.+++..+.. ..+++.+=-|.++.
T Consensus 128 ~~~~~~ayL~~~---ie~~~siii~G~t~sGKTt-~lnall~~Ip~----~~rivtIEdt~E~~ 183 (312)
T COG0630 128 ISPEQAAYLWLA---IEARKSIIICGGTASGKTT-LLNALLDFIPP----EERIVTIEDTPELK 183 (312)
T ss_pred CCHHHHHHHHHH---HHcCCcEEEECCCCCCHHH-HHHHHHHhCCc----hhcEEEEecccccc
Confidence 455555544333 3468999999999999996 45555554432 33677776666654
No 400
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=89.74 E-value=1.1 Score=44.92 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=31.4
Q ss_pred cEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHH
Q 011884 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L 68 (475)
..++.|+.|||||.+....++..+... .++.+++++-|+..-
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-~~~~~~~~~r~~~~s 44 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-KKQQNILAARKVQNS 44 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-CCCcEEEEEehhhhH
Confidence 357899999999998887766666553 134678888888763
No 401
>PRK08506 replicative DNA helicase; Provisional
Probab=89.71 E-value=1.9 Score=44.40 Aligned_cols=47 Identities=13% Similarity=-0.082 Sum_probs=31.5
Q ss_pred hhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 14 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 14 ~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
+..+...+..|.-++|.|.||.|||..++..+...+ . .+.+|+|++.
T Consensus 182 LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~-~---~g~~V~~fSl 228 (472)
T PRK08506 182 LNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKAL-N---QDKGVAFFSL 228 (472)
T ss_pred HHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHH-h---cCCcEEEEeC
Confidence 344455555667789999999999987666555543 2 2446777763
No 402
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.70 E-value=0.37 Score=49.58 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=25.9
Q ss_pred cchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHh
Q 011884 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 50 (475)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~ 50 (475)
.+.|.+.+..++. ..+.-++++||||||||.+. .+++..+.
T Consensus 227 ~~~~~~~l~~~~~--~~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 227 SPELLSRFERLIR--RPHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred CHHHHHHHHHHHh--cCCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 4556666555443 11234789999999999754 44555553
No 403
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=89.60 E-value=0.45 Score=46.03 Aligned_cols=37 Identities=16% Similarity=0.052 Sum_probs=26.4
Q ss_pred hhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHHHH
Q 011884 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~~~ 45 (475)
+|.++.+.+...+.++ ...|+.||.|+||+..+...+
T Consensus 8 Gq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a 47 (314)
T PRK07399 8 GQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFI 47 (314)
T ss_pred CHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHH
Confidence 4666666666665565 469999999999997665433
No 404
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=89.58 E-value=0.72 Score=52.64 Aligned_cols=80 Identities=10% Similarity=0.300 Sum_probs=58.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcCC-Cce---eeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-cccCCC-CC-CC
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFGE-LRI---KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMD-VE-GV 398 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~~-~~~---~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-~~~GiD-ip-~~ 398 (475)
+.+++|.+||++.+.++++.++.... .++ .+..+||+++..++.+.++.+.+|..+|||+|+. +...++ +. .+
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~ 200 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKF 200 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCC
Confidence 67899999999999999998887642 122 2446899999999988899999988999999973 211111 12 56
Q ss_pred cEEEEec
Q 011884 399 NNVVNYD 405 (475)
Q Consensus 399 ~~Vv~~~ 405 (475)
+++|+-+
T Consensus 201 ~~iVvDE 207 (1171)
T TIGR01054 201 DFIFVDD 207 (1171)
T ss_pred CEEEEeC
Confidence 6666533
No 405
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=89.56 E-value=0.59 Score=43.05 Aligned_cols=41 Identities=12% Similarity=-0.042 Sum_probs=28.5
Q ss_pred CCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEccc
Q 011884 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt 65 (475)
+..+.-+++.|++|+|||..++..+...+. ++.++++++..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~----~g~~~~yi~~e 61 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ----NGYSVSYVSTQ 61 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh----CCCcEEEEeCC
Confidence 445678999999999999865554444332 34568888844
No 406
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=89.54 E-value=4.2 Score=37.30 Aligned_cols=16 Identities=38% Similarity=0.777 Sum_probs=14.3
Q ss_pred CCcEEEECCCCCchhH
Q 011884 24 ERDLCINSPTGSGKTL 39 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~ 39 (475)
-+.+++.||+|+|||.
T Consensus 189 prgvllygppg~gktm 204 (408)
T KOG0727|consen 189 PRGVLLYGPPGTGKTM 204 (408)
T ss_pred CcceEEeCCCCCcHHH
Confidence 4779999999999995
No 407
>PF14516 AAA_35: AAA-like domain
Probab=89.52 E-value=0.97 Score=44.16 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=29.4
Q ss_pred hhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEE
Q 011884 9 VQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 62 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil 62 (475)
...++++.+.+ .|..+.|.||=.+|||.. +..+.+.+... +-+++++
T Consensus 19 ~e~~~~~~i~~---~G~~~~I~apRq~GKTSl-l~~l~~~l~~~---~~~~v~i 65 (331)
T PF14516_consen 19 AEQECYQEIVQ---PGSYIRIKAPRQMGKTSL-LLRLLERLQQQ---GYRCVYI 65 (331)
T ss_pred HHHHHHHHHhc---CCCEEEEECcccCCHHHH-HHHHHHHHHHC---CCEEEEE
Confidence 45555444433 388999999999999964 34455555443 3345554
No 408
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=89.44 E-value=0.31 Score=51.29 Aligned_cols=41 Identities=34% Similarity=0.425 Sum_probs=26.6
Q ss_pred cchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHh
Q 011884 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 50 (475)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~ 50 (475)
.+.|.+.+..++. ..+.-++++||||||||.+. .+++..+.
T Consensus 301 ~~~~~~~l~~~~~--~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 301 EPDQKALFLEAIH--KPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred CHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 4555555554443 12456889999999999754 55666553
No 409
>PRK13531 regulatory ATPase RavA; Provisional
Probab=89.25 E-value=0.28 Score=49.75 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=29.4
Q ss_pred chhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHH
Q 011884 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 8 ~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~ 43 (475)
..|.+++..++..+..+.++++.||+|+|||..+-.
T Consensus 23 ~gre~vI~lll~aalag~hVLL~GpPGTGKT~LAra 58 (498)
T PRK13531 23 YERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARR 58 (498)
T ss_pred cCcHHHHHHHHHHHccCCCEEEECCCChhHHHHHHH
Confidence 356677777788888899999999999999986533
No 410
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=89.23 E-value=0.56 Score=42.33 Aligned_cols=42 Identities=19% Similarity=0.077 Sum_probs=29.1
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEccc
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt 65 (475)
.+..|+-+.|.||+|+|||..++..+..... .+.+++++.-.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~----~g~~v~yi~~e 49 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAAR----QGKKVVYIDTE 49 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----CCCeEEEEECC
Confidence 3445677999999999999877655544432 23468877764
No 411
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=89.18 E-value=0.6 Score=32.95 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.5
Q ss_pred CCcEEEECCCCCchhHH
Q 011884 24 ERDLCINSPTGSGKTLS 40 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~ 40 (475)
+...+|.+|+|+|||..
T Consensus 23 g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL 39 (62)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35799999999999973
No 412
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.11 E-value=0.94 Score=42.53 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=27.8
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
+-+|+.||+|+||++.+- +++ .. .+ ...|-+.+-.|+..|
T Consensus 167 rgiLLyGPPGTGKSYLAK--AVA---TE--An-STFFSvSSSDLvSKW 206 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAK--AVA---TE--AN-STFFSVSSSDLVSKW 206 (439)
T ss_pred eeEEEeCCCCCcHHHHHH--HHH---hh--cC-CceEEeehHHHHHHH
Confidence 349999999999996432 222 11 12 478888888998775
No 413
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.07 E-value=3.2 Score=43.61 Aligned_cols=48 Identities=19% Similarity=0.113 Sum_probs=28.7
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhh
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA 75 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~ 75 (475)
+.++|+|++|+|||..+.. +...+... ..+.+|+++.. ..+++++...
T Consensus 315 NpL~LyG~sGsGKTHLL~A-Ia~~a~~~-~~g~~V~Yita-eef~~el~~a 362 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHA-IGHYARRL-YPGTRVRYVSS-EEFTNEFINS 362 (617)
T ss_pred CcEEEECCCCCCHHHHHHH-HHHHHHHh-CCCCeEEEeeH-HHHHHHHHHH
Confidence 4589999999999985433 33333321 13445666654 5566665443
No 414
>PRK08840 replicative DNA helicase; Provisional
Probab=89.02 E-value=2.9 Score=42.84 Aligned_cols=46 Identities=9% Similarity=-0.090 Sum_probs=30.1
Q ss_pred hhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 15 ~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
..+...+..|+-++|.|.||.|||..++-.+....... +..|+|.+
T Consensus 208 D~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~---~~~v~~fS 253 (464)
T PRK08840 208 NKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQ---DKPVLIFS 253 (464)
T ss_pred HHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhC---CCeEEEEe
Confidence 34455565667788999999999986655444433222 34577776
No 415
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=88.97 E-value=0.64 Score=42.67 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=29.5
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~ 67 (475)
++++.|.|.||||||.+... +++.+.. ..+.+++++=|.-+
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~-ll~~l~~--~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKV-LLEELLK--KKGAKVIIFDPHGE 63 (229)
T ss_pred cceEEEECCCCCCHHHHHHH-HHHHHHh--cCCCCEEEEcCCCc
Confidence 58899999999999986544 5555542 23456888878754
No 416
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=88.96 E-value=0.86 Score=47.26 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=14.9
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
+.+++.||+|+|||..+
T Consensus 89 ~giLL~GppGtGKT~la 105 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999754
No 417
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=88.91 E-value=0.43 Score=45.07 Aligned_cols=46 Identities=13% Similarity=0.015 Sum_probs=30.8
Q ss_pred hhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 16 ~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
.++..+..|.-++|.|++|+|||..+...+...+.. .+.+|++++-
T Consensus 22 ~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---~g~~vl~iS~ 67 (271)
T cd01122 22 KLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ---HGVRVGTISL 67 (271)
T ss_pred eeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---cCceEEEEEc
Confidence 344455567789999999999998665544444332 1446888873
No 418
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=88.83 E-value=0.9 Score=45.41 Aligned_cols=48 Identities=25% Similarity=0.311 Sum_probs=33.1
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhh
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNS 74 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~ 74 (475)
..+++++.|.||||||. ++..++..+... +.+++|.=|.-+.....++
T Consensus 14 e~~~~li~G~~GsGKT~-~i~~ll~~~~~~---g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 14 ENRHILIIGATGSGKTQ-AIRHLLDQIRAR---GDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp GGG-EEEEE-TTSSHHH-HHHHHHHHHHHT---T-EEEEEEETTHHHHHH--
T ss_pred hhCcEEEECCCCCCHHH-HHHHHHHHHHHc---CCEEEEEECCchHHHHhcC
Confidence 35899999999999996 456677766554 4468888898888777655
No 419
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=88.81 E-value=0.62 Score=43.79 Aligned_cols=41 Identities=20% Similarity=0.076 Sum_probs=29.1
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
.+..|+.++|.|++|||||+.++-.+...+. .+.++++++-
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~----~ge~vlyvs~ 59 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAR----EGEPVLYVST 59 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHh----cCCcEEEEEe
Confidence 3556788999999999999765554444433 3456888874
No 420
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=88.75 E-value=1.1 Score=43.37 Aligned_cols=54 Identities=20% Similarity=0.072 Sum_probs=35.6
Q ss_pred hhhhcC--CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHH
Q 011884 14 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (475)
Q Consensus 14 ~~~~~~--~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q 71 (475)
+..++. .+..|+-+.|.||+|+|||..++..+.+... .+.+++|+..-..+-.+
T Consensus 43 LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~----~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 43 LDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK----AGGTAAFIDAEHALDPV 98 (321)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEEcccchhHHH
Confidence 344443 5666778999999999999876665554432 34578888655544443
No 421
>PRK06321 replicative DNA helicase; Provisional
Probab=88.73 E-value=3.2 Score=42.64 Aligned_cols=47 Identities=11% Similarity=-0.119 Sum_probs=29.0
Q ss_pred hhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 14 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 14 ~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
+..+...+..|.=++|.|.||.|||..++-.+....... +..|+|.+
T Consensus 216 LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~---g~~v~~fS 262 (472)
T PRK06321 216 LDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQN---RLPVGIFS 262 (472)
T ss_pred HHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 344455555566688899999999976555333322222 33577776
No 422
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=88.70 E-value=0.15 Score=45.56 Aligned_cols=32 Identities=22% Similarity=0.142 Sum_probs=19.6
Q ss_pred hhhhhhhhhcCCCCCCCcEEEECCCCCchhHH
Q 011884 9 VQVAVWQETIGPGLFERDLCINSPTGSGKTLS 40 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~ 40 (475)
.|..+...+.-+...+.++++.||+|+|||..
T Consensus 7 GQe~aKrAL~iAAaG~h~lLl~GppGtGKTml 38 (206)
T PF01078_consen 7 GQEEAKRALEIAAAGGHHLLLIGPPGTGKTML 38 (206)
T ss_dssp STHHHHHHHHHHHHCC--EEEES-CCCTHHHH
T ss_pred CcHHHHHHHHHHHcCCCCeEEECCCCCCHHHH
Confidence 45555444444444568999999999999974
No 423
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=88.66 E-value=0.31 Score=44.77 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=12.1
Q ss_pred EEEECCCCCchhHH
Q 011884 27 LCINSPTGSGKTLS 40 (475)
Q Consensus 27 ~li~a~tGsGKT~~ 40 (475)
++|.|++|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999973
No 424
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=88.54 E-value=4.8 Score=40.69 Aligned_cols=127 Identities=14% Similarity=0.239 Sum_probs=89.9
Q ss_pred HHhcCCCeEEEEcCChHHHHHHHHHHhhc-CCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-----cccC-C
Q 011884 321 LQSLGEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-M 393 (475)
Q Consensus 321 l~~~~~~~~lvf~~s~~~~~~l~~~l~~~-~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-----~~~G-i 393 (475)
+...+ +++|+..||+..+.+=++.+.+. +.+...++.+.|..++++|.+.. .+.+|+++|+- +-.| +
T Consensus 54 l~~~~-~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w-----~~~kVfvaTPQvveNDl~~Gri 127 (542)
T COG1111 54 LRWFG-GKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELW-----AKKKVFVATPQVVENDLKAGRI 127 (542)
T ss_pred HHhcC-CeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHH-----hhCCEEEeccHHHHhHHhcCcc
Confidence 33444 48999999999888877777664 33456788999999998887655 24589999962 2345 8
Q ss_pred CCCCCcEEEEecCCCCH--HHHHHHhhhccccCCCCcEEEEe--echhHHHHHHHHHHhcCCCC
Q 011884 394 DVEGVNNVVNYDKPAYI--KTYIHRAGRTARAGQLGRCFTLL--HKDEVKRFKKLLQKADNDSC 453 (475)
Q Consensus 394 Dip~~~~Vv~~~~~~s~--~~~~Q~~GR~~R~~~~g~~~~~~--~~~~~~~~~~l~~~~~~~~~ 453 (475)
|+.++.++|+-...+.. ..|++.+-...|....-..+-+. ...+.+++.++.+++..+..
T Consensus 128 d~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~v 191 (542)
T COG1111 128 DLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKV 191 (542)
T ss_pred ChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceE
Confidence 99999999887666543 36667777677765333344443 44788999999998876543
No 425
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=88.47 E-value=1.1 Score=41.42 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=33.9
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhc
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
.+..+.-+++.|++|+|||..+...+...+. .+.+++|+.-... ..++.+.+..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~----~g~~~~y~~~e~~-~~~~~~~~~~ 74 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK----QGKKVYVITTENT-SKSYLKQMES 74 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh----CCCEEEEEEcCCC-HHHHHHHHHH
Confidence 4445677999999999999866555544443 2446888874333 3344444433
No 426
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.43 E-value=1.4 Score=46.37 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=43.3
Q ss_pred CCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEE-cccHHHHHHHhhhhhccc
Q 011884 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-LPTRDLALQVNSARCKYC 80 (475)
Q Consensus 3 ~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil-~Pt~~L~~q~~~~~~~~~ 80 (475)
|..|+..-...++.+-=.+..|+.+-+.||.|+|||.+ +.++.+++++. .+++++= +|-+.+-..+.+.--.++
T Consensus 473 FaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTi--asLL~rfY~Pt--sG~IllDG~~i~~~~~~~lr~~Ig~V 547 (716)
T KOG0058|consen 473 FAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTI--ASLLLRFYDPT--SGRILLDGVPISDINHKYLRRKIGLV 547 (716)
T ss_pred eecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHH--HHHHHHhcCCC--CCeEEECCeehhhcCHHHHHHHeeee
Confidence 34444444445554444566688999999999999985 44566666652 2233332 355555555555433333
No 427
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=88.31 E-value=0.26 Score=49.30 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=36.5
Q ss_pred cEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcc
Q 011884 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 79 (475)
++++.||||||||..+++|.+-.. ...++|+=|--++....+...++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC------CCCEEEEccchhHHHHHHHHHHHc
Confidence 578999999999998887755421 236888889999988777665543
No 428
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=88.27 E-value=0.51 Score=45.57 Aligned_cols=42 Identities=26% Similarity=0.401 Sum_probs=25.9
Q ss_pred CCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHH
Q 011884 22 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (475)
Q Consensus 22 ~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L 68 (475)
..+.++++.||||||||... .+++..+. +..+++.+-.+.++
T Consensus 142 ~~~~~ili~G~tGsGKTTll-~al~~~~~----~~~~iv~ied~~El 183 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFL-KSLVDEIP----KDERIITIEDTREI 183 (308)
T ss_pred hCCCEEEEECCCCCCHHHHH-HHHHccCC----ccccEEEEcCcccc
Confidence 35789999999999999743 33333321 23356665444443
No 429
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=88.27 E-value=0.71 Score=42.39 Aligned_cols=41 Identities=15% Similarity=0.006 Sum_probs=28.3
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
.+..|..+++.|++|+|||..+...+.+.+.+ +.++++++-
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~----g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD----GDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhc----CCeEEEEEc
Confidence 45567889999999999998665544444322 335777764
No 430
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=88.23 E-value=1.2 Score=40.35 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.5
Q ss_pred CcEEEECCCCCchhHHhHH
Q 011884 25 RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~ 43 (475)
.+++++||+|+|||..+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 5799999999999985544
No 431
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=88.16 E-value=3.8 Score=36.58 Aligned_cols=78 Identities=14% Similarity=0.268 Sum_probs=55.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCC-CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-----ccc-CCCCCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTR-GMDVEG 397 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-----~~~-GiDip~ 397 (475)
.+.+++|.+|+++.+.+.++.+..... .+.++..++|+.+..+....++ +...|+|+|.- +.. -.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 456899999999999999888877632 3577888999887655443332 56789999952 222 256777
Q ss_pred CcEEEEecC
Q 011884 398 VNNVVNYDK 406 (475)
Q Consensus 398 ~~~Vv~~~~ 406 (475)
++.+|+-+.
T Consensus 144 l~~lIvDE~ 152 (203)
T cd00268 144 VKYLVLDEA 152 (203)
T ss_pred CCEEEEeCh
Confidence 888776543
No 432
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=88.16 E-value=4.1 Score=39.40 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=17.6
Q ss_pred CCc-EEEECCCCCchhHHhHHHH
Q 011884 24 ERD-LCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 24 ~~~-~li~a~tGsGKT~~~~~~~ 45 (475)
..+ +|+.||+|+|||.++...+
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA 45 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALA 45 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHH
Confidence 466 9999999999998765533
No 433
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=87.97 E-value=1.2 Score=43.03 Aligned_cols=54 Identities=19% Similarity=0.051 Sum_probs=36.6
Q ss_pred hhhhcC--CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHH
Q 011884 14 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (475)
Q Consensus 14 ~~~~~~--~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q 71 (475)
+..++. .+..|+-+.|.||+|+|||..++..+..... .+.+++|+.+-..+-.+
T Consensus 43 LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~----~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 43 LDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK----LGGTVAFIDAEHALDPV 98 (325)
T ss_pred HHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCCEEEECccccHHHH
Confidence 344444 4556677889999999999877665555432 34578888875555444
No 434
>PRK08006 replicative DNA helicase; Provisional
Probab=87.69 E-value=4.1 Score=41.80 Aligned_cols=47 Identities=9% Similarity=-0.120 Sum_probs=30.7
Q ss_pred hhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 14 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 14 ~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
+..+...+..|.-++|.|.||.|||..++-.+....... +..|+|.+
T Consensus 214 LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~---g~~V~~fS 260 (471)
T PRK08006 214 LNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQ---DKPVLIFS 260 (471)
T ss_pred HHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 344455565667788999999999976655554433222 34577776
No 435
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=87.64 E-value=0.44 Score=38.64 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=13.1
Q ss_pred EEEECCCCCchhHHh
Q 011884 27 LCINSPTGSGKTLSY 41 (475)
Q Consensus 27 ~li~a~tGsGKT~~~ 41 (475)
++|.|++|||||+.+
T Consensus 2 I~I~G~~gsGKST~a 16 (121)
T PF13207_consen 2 IIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999854
No 436
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.62 E-value=0.61 Score=51.71 Aligned_cols=97 Identities=16% Similarity=0.014 Sum_probs=0.0
Q ss_pred hhhhhhhhhcCCCCCC--CcEEEECCCCCchhHHhHHHHHHHHhhhhc---cccceEEEcccHHHHHHHhhhhhcccccc
Q 011884 9 VQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPTRDLALQVNSARCKYCCKN 83 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~~li~a~tGsGKT~~~~~~~~~~l~~~~~---~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 83 (475)
+|..-+..++..+.++ .+.++.||+|+|||..+-..+.......-. .+.+++.+-...-++..
T Consensus 177 gr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~------------ 244 (852)
T TIGR03346 177 GRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGA------------ 244 (852)
T ss_pred CcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcc------------
Q ss_pred cccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhh
Q 011884 84 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 163 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (475)
T Consensus 245 -------------------------------------------------------------------------------- 244 (852)
T TIGR03346 245 -------------------------------------------------------------------------------- 244 (852)
T ss_pred --------------------------------------------------------------------------------
Q ss_pred hcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHH
Q 011884 164 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 203 (475)
Q Consensus 164 ~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l 203 (475)
...-..-..+...+....... .-.++++||+|.+
T Consensus 245 ----~~~g~~e~~l~~~l~~~~~~~--~~~ILfIDEih~l 278 (852)
T TIGR03346 245 ----KYRGEFEERLKAVLNEVTKSE--GQIILFIDELHTL 278 (852)
T ss_pred ----hhhhhHHHHHHHHHHHHHhcC--CCeEEEeccHHHh
No 437
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.59 E-value=0.67 Score=51.30 Aligned_cols=97 Identities=16% Similarity=0.034 Sum_probs=0.0
Q ss_pred hhhhhhhhhcCCCCCC--CcEEEECCCCCchhHHhHHHHHHHHh---hhhccccceEEEcccHHHHHHHhhhhhcccccc
Q 011884 9 VQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLS---NRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 83 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~~li~a~tGsGKT~~~~~~~~~~l~---~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 83 (475)
+|..-+..++..+... .++++.||+|+|||..+-..+..... .....+.+++.+-....++.-
T Consensus 182 gr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~------------ 249 (857)
T PRK10865 182 GRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGA------------ 249 (857)
T ss_pred CCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhcc------------
Q ss_pred cccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhh
Q 011884 84 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 163 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (475)
T Consensus 250 -------------------------------------------------------------------------------- 249 (857)
T PRK10865 250 -------------------------------------------------------------------------------- 249 (857)
T ss_pred --------------------------------------------------------------------------------
Q ss_pred hcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHH
Q 011884 164 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 203 (475)
Q Consensus 164 ~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l 203 (475)
...=..-+.+...+...... ..-.++++||+|.+
T Consensus 250 ----~~~g~~e~~lk~~~~~~~~~--~~~~ILfIDEih~l 283 (857)
T PRK10865 250 ----KYRGEFEERLKGVLNDLAKQ--EGNVILFIDELHTM 283 (857)
T ss_pred ----chhhhhHHHHHHHHHHHHHc--CCCeEEEEecHHHh
No 438
>PF13479 AAA_24: AAA domain
Probab=87.58 E-value=1.4 Score=40.00 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=24.5
Q ss_pred cEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHH
Q 011884 168 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 204 (475)
Q Consensus 168 ~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~ 204 (475)
.+-|.+++.+.+.+.... .....++.||||-+..+.
T Consensus 46 ~i~i~s~~~~~~~~~~l~-~~~~~y~tiVIDsis~~~ 81 (213)
T PF13479_consen 46 VIPITSWEDFLEALDELE-EDEADYDTIVIDSISWLE 81 (213)
T ss_pred eeCcCCHHHHHHHHHHHH-hccCCCCEEEEECHHHHH
Confidence 455667777777654321 124679999999999874
No 439
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=87.56 E-value=0.74 Score=42.40 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=24.5
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEccc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt 65 (475)
-+++|.|++|||||. +++.++..+... -..+++++|.
T Consensus 14 fr~viIG~sGSGKT~-li~~lL~~~~~~---f~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTT-LIKSLLYYLRHK---FDHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHH-HHHHHHHhhccc---CCEEEEEecC
Confidence 478999999999996 444455544332 2356666773
No 440
>PRK08116 hypothetical protein; Validated
Probab=87.47 E-value=1.2 Score=41.93 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=27.7
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHh
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 73 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~ 73 (475)
..+++.|++|+|||..+.. +...+... +..++++ +...+..++.
T Consensus 115 ~gl~l~G~~GtGKThLa~a-ia~~l~~~---~~~v~~~-~~~~ll~~i~ 158 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAAC-IANELIEK---GVPVIFV-NFPQLLNRIK 158 (268)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHHc---CCeEEEE-EHHHHHHHHH
Confidence 3499999999999986544 45544433 2345554 4456666643
No 441
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.29 E-value=0.75 Score=49.22 Aligned_cols=31 Identities=26% Similarity=0.270 Sum_probs=22.1
Q ss_pred CCccEEEEcchHHHHHHHHHhhHHHHHHhcc
Q 011884 190 EHLCYLVVDETDRLLREAYQAWLPTVLQLTR 220 (475)
Q Consensus 190 ~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~ 220 (475)
.+.-++|+|+.|.+.+......++.+++..+
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P 158 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAP 158 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCC
Confidence 3456899999999877666666666666544
No 442
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=87.19 E-value=1.4 Score=44.77 Aligned_cols=55 Identities=16% Similarity=0.299 Sum_probs=47.2
Q ss_pred EEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC
Q 011884 329 CIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 387 (475)
Q Consensus 329 ~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~ 387 (475)
.||++||++.|.++++.+.... ..++.+..+.||+.....+++++. ...|+|||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 7999999999999999998764 356889999999998777777766 678999996
No 443
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.10 E-value=1.3 Score=40.67 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=23.6
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
.+..++++||+|+|||..+.. +...+.. .+..++++..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~a-i~~~~~~---~~~~~~~i~~ 78 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQA-LVADASY---GGRNARYLDA 78 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHHh---CCCcEEEEeh
Confidence 346799999999999975433 3332222 2335666553
No 444
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=87.03 E-value=1.5 Score=50.52 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=44.2
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcc
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 79 (475)
-.++++|.|+.|||||.+...-++..+..+ ....++++++-|+.-+..|..++.+.
T Consensus 9 p~~~~~~~a~agsgkt~~l~~~~~~~~~~~-~~~~~i~~~t~t~~aa~em~~Ri~~~ 64 (1141)
T TIGR02784 9 PKTSAWVSANAGSGKTHVLTQRVIRLLLNG-VPPSKILCLTYTKAAAAEMQNRVFDR 64 (1141)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHcC-CCCCeEEEEecCHHHHHHHHHHHHHH
Confidence 457899999999999998776666666543 34457999999999999988776554
No 445
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=86.96 E-value=0.93 Score=41.22 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=30.1
Q ss_pred hhhcC-CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 15 QETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 15 ~~~~~-~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
..++. .+..|.-++|.|++|+|||..++..+..... .+.+++++.
T Consensus 9 D~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~----~g~~v~yi~ 54 (218)
T cd01394 9 DELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAG----QGKKVAYID 54 (218)
T ss_pred HHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCCeEEEEE
Confidence 34443 4455677899999999999876665544332 244688874
No 446
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=86.96 E-value=0.95 Score=45.66 Aligned_cols=47 Identities=23% Similarity=0.308 Sum_probs=34.3
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhh
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNS 74 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~ 74 (475)
.+++++.|+||||||.. +..++..+... +.+++|+=|..++....++
T Consensus 42 ~~h~~i~g~tGsGKt~~-i~~l~~~~~~~---~~~~vi~D~kg~~~~~~~~ 88 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQ-IRELLASIRAR---GDRAIIYDPNGGFVSKFYR 88 (410)
T ss_pred hccEEEEcCCCCCHHHH-HHHHHHHHHhc---CCCEEEEeCCcchhHhhcC
Confidence 47899999999999975 33445554443 4478888899888776543
No 447
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=86.95 E-value=0.62 Score=47.75 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=20.0
Q ss_pred cCCccEEEEcchHHHHHHHHHhhHHHH
Q 011884 189 LEHLCYLVVDETDRLLREAYQAWLPTV 215 (475)
Q Consensus 189 ~~~~~~lVvDE~H~l~~~~~~~~i~~i 215 (475)
-.++++.|+||+|.+....|...++.+
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNALLKTL 143 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNALLKTL 143 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHHhccc
Confidence 466889999999999776665544443
No 448
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.95 E-value=3.1 Score=40.58 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=64.2
Q ss_pred cHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-Cc-
Q 011884 313 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM- 389 (475)
Q Consensus 313 ~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-~~- 389 (475)
-.+.+..++.+...-.++|.+||++.|.+++..++..+ .-+..+..+-|||.. ..+.+..++ +..|||||+ .+
T Consensus 116 aLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m--~~q~~~L~k--kPhilVaTPGrL~ 191 (476)
T KOG0330|consen 116 ALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDM--MLQANQLSK--KPHILVATPGRLW 191 (476)
T ss_pred HHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchH--HHHHHHhhc--CCCEEEeCcHHHH
Confidence 34556666665555688999999999999999999884 467889999999866 444444454 678899996 22
Q ss_pred -----ccCCCCCCCcEEEE
Q 011884 390 -----TRGMDVEGVNNVVN 403 (475)
Q Consensus 390 -----~~GiDip~~~~Vv~ 403 (475)
..|+.+..+.+.|+
T Consensus 192 dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred HHHHhccCccHHHhHHHhh
Confidence 35777777776654
No 449
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=86.95 E-value=0.58 Score=38.36 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=13.0
Q ss_pred EEEECCCCCchhHHh
Q 011884 27 LCINSPTGSGKTLSY 41 (475)
Q Consensus 27 ~li~a~tGsGKT~~~ 41 (475)
+++.||+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999754
No 450
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=86.93 E-value=0.87 Score=47.02 Aligned_cols=55 Identities=13% Similarity=0.035 Sum_probs=35.2
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhc
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
.+..|+.++|.||+|+|||+.++-.+.+.+.+. +.+++|++-- +-..++.+.+..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~---ge~~lyvs~e-E~~~~l~~~~~~ 71 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHF---DEPGVFVTFE-ESPQDIIKNARS 71 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC---CCCEEEEEEe-cCHHHHHHHHHH
Confidence 455678899999999999987665555544431 3468888732 334444444333
No 451
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=86.87 E-value=0.43 Score=49.17 Aligned_cols=50 Identities=28% Similarity=0.354 Sum_probs=37.6
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
.++++.||||||||..+++|.+-. . ++ .+||.=|-.+|...++...++..
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~---~~-s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--Y---PG-SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--c---cC-CEEEEECCCcHHHHHHHHHHHCC
Confidence 479999999999999998886532 1 12 58888899998887776655543
No 452
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=86.85 E-value=0.51 Score=42.31 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=27.2
Q ss_pred hhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhh
Q 011884 10 QVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 52 (475)
Q Consensus 10 Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~ 52 (475)
+.++++.+--.+..|.-+.|+||.|||||+ ++=++..+...
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKST--lLRclN~LE~~ 54 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKST--LLRCLNGLEEP 54 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHH--HHHHHHCCcCC
Confidence 444444444455567889999999999996 34455555543
No 453
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=86.79 E-value=3.3 Score=41.96 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=23.7
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
..++++|++|+|||.++...+. .+... +.++++++
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~-~L~~~---g~kV~lV~ 130 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLAR-YFKKK---GLKVGLVA 130 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHH-HHHHc---CCeEEEec
Confidence 4588899999999987766443 34332 34566665
No 454
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=86.68 E-value=2.4 Score=45.31 Aligned_cols=76 Identities=18% Similarity=0.307 Sum_probs=53.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCC--CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-----Cccc-CCCCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVE 396 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~--~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-----~~~~-GiDip 396 (475)
...++||.+|+++.+.++++.++.... .+..+..+||+.+...... .++ ....|+|+|+ .+.. .+++.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~---~l~-~~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR---ALR-QGPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHH---Hhc-CCCCEEEECHHHHHHHHHcCCcchh
Confidence 345899999999999999998877632 3578888999876644332 333 3578999995 2223 46777
Q ss_pred CCcEEEEe
Q 011884 397 GVNNVVNY 404 (475)
Q Consensus 397 ~~~~Vv~~ 404 (475)
++..||+=
T Consensus 149 ~l~~lVlD 156 (629)
T PRK11634 149 KLSGLVLD 156 (629)
T ss_pred hceEEEec
Confidence 88877753
No 455
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=86.63 E-value=2.3 Score=47.16 Aligned_cols=34 Identities=18% Similarity=0.052 Sum_probs=22.5
Q ss_pred hhhhhhhhhcCCCCC--------C---CcEEEECCCCCchhHHhH
Q 011884 9 VQVAVWQETIGPGLF--------E---RDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~--------~---~~~li~a~tGsGKT~~~~ 42 (475)
+|..|+..+...+.. + ..+++.||||+|||..+-
T Consensus 570 GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 570 GQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETAL 614 (852)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHH
Confidence 566666655444321 1 138999999999998653
No 456
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=86.61 E-value=0.96 Score=46.72 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=34.9
Q ss_pred CCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhc
Q 011884 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
+..|.-++|.||+|+|||...+..+...+. .+.+++|++- .+-..|+.+.++.
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~----~ge~~~y~s~-eEs~~~i~~~~~~ 312 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACA----NKERAILFAY-EESRAQLLRNAYS 312 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEEe-eCCHHHHHHHHHH
Confidence 445678999999999999866655554433 3446888874 3446665444433
No 457
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=86.60 E-value=0.42 Score=46.72 Aligned_cols=34 Identities=26% Similarity=0.213 Sum_probs=23.0
Q ss_pred hhhhhhhhcCCCCCCC--cEEEECCCCCchhHHhHH
Q 011884 10 QVAVWQETIGPGLFER--DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 10 Q~~a~~~~~~~~~~~~--~~li~a~tGsGKT~~~~~ 43 (475)
|..+...+...+.+++ ++++.||+|+|||..+..
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHH
Confidence 4444444444444554 799999999999986544
No 458
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=86.60 E-value=0.87 Score=39.92 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=21.9
Q ss_pred cchhhhhhhhhcCCC--CCCCcEEEECCCCCchhHHhHHHHHHHHhh
Q 011884 7 FPVQVAVWQETIGPG--LFERDLCINSPTGSGKTLSYALPIVQTLSN 51 (475)
Q Consensus 7 ~~~Q~~a~~~~~~~~--~~~~~~li~a~tGsGKT~~~~~~~~~~l~~ 51 (475)
|..|.+.+...++.. ..++.++|.|+.|+|||... ..++..+..
T Consensus 5 R~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll-~~~~~~~~~ 50 (185)
T PF13191_consen 5 REEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLL-RALLDRLAE 50 (185)
T ss_dssp -HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHH-HHHHHHHHh
Confidence 344555555555322 22367999999999999743 334444444
No 459
>PRK08939 primosomal protein DnaI; Reviewed
Probab=86.55 E-value=1.4 Score=42.43 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=28.2
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhh
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNS 74 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~ 74 (475)
++.+++.||+|+|||..+.. +...+... +..+.++.- -.++.++..
T Consensus 156 ~~gl~L~G~~G~GKThLa~A-ia~~l~~~---g~~v~~~~~-~~l~~~lk~ 201 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAA-IANELAKK---GVSSTLLHF-PEFIRELKN 201 (306)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHc---CCCEEEEEH-HHHHHHHHH
Confidence 46799999999999986543 44444332 334555532 256666433
No 460
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.55 E-value=2.9 Score=43.34 Aligned_cols=110 Identities=15% Similarity=0.278 Sum_probs=0.0
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLL 104 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (475)
+.+|+.||+|+||| .+++...+... .-++-++--+++.+
T Consensus 224 rGvLlHGPPGCGKT------~lA~AiAgel~--vPf~~isApeivSG--------------------------------- 262 (802)
T KOG0733|consen 224 RGVLLHGPPGCGKT------SLANAIAGELG--VPFLSISAPEIVSG--------------------------------- 262 (802)
T ss_pred CceeeeCCCCccHH------HHHHHHhhhcC--CceEeecchhhhcc---------------------------------
Q ss_pred cccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHHHhhcC
Q 011884 105 FISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 184 (475)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~ 184 (475)
+-=.+-+.+.+++...
T Consensus 263 ----------------------------------------------------------------vSGESEkkiRelF~~A 278 (802)
T KOG0733|consen 263 ----------------------------------------------------------------VSGESEKKIRELFDQA 278 (802)
T ss_pred ----------------------------------------------------------------cCcccHHHHHHHHHHH
Q ss_pred CCcccCCccEEEEcchHHHH-------HHHHHhhHHHHHHhccccccccccccccccccccccchhhhccccccCCCCCC
Q 011884 185 RGFTLEHLCYLVVDETDRLL-------REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 257 (475)
Q Consensus 185 ~~~~~~~~~~lVvDE~H~l~-------~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (475)
.... .+++++||++.+. ...-...+..++..+.. +....
T Consensus 279 ~~~a---PcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~-------------------------------l~~~~ 324 (802)
T KOG0733|consen 279 KSNA---PCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDE-------------------------------LSNEK 324 (802)
T ss_pred hccC---CeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhc-------------------------------ccccc
Q ss_pred ccchheeeeceeeccC
Q 011884 258 YPRLVKMVLSATLTQD 273 (475)
Q Consensus 258 ~~~~~~i~~SaT~~~~ 273 (475)
..+...+++.||-.++
T Consensus 325 ~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 325 TKGDPVLVIGATNRPD 340 (802)
T ss_pred cCCCCeEEEecCCCCc
No 461
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=86.51 E-value=0.87 Score=44.54 Aligned_cols=42 Identities=24% Similarity=0.246 Sum_probs=27.7
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHH
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 69 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~ 69 (475)
.+.+++++|+||+|||... .+++..+. +..+++.+--+.++.
T Consensus 177 ~~~~ili~G~tGsGKTTll-~al~~~i~----~~~riv~iEd~~El~ 218 (340)
T TIGR03819 177 ARLAFLISGGTGSGKTTLL-SALLALVA----PDERIVLVEDAAELR 218 (340)
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHccCC----CCCcEEEECCcceec
Confidence 4689999999999999633 33443332 234677776666653
No 462
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.48 E-value=3.4 Score=38.97 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=17.7
Q ss_pred CcEEEECCCCCchhHHhHHHHH
Q 011884 25 RDLCINSPTGSGKTLSYALPIV 46 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~ 46 (475)
..+.+.|++|+|||..+...+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 6789999999999987665443
No 463
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=86.37 E-value=1.1 Score=41.01 Aligned_cols=46 Identities=24% Similarity=0.146 Sum_probs=30.3
Q ss_pred hhhcC-CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 15 QETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 15 ~~~~~-~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
..++. .+..|.-+++.|++|+|||..++..+.+.+.. +.+++|+.-
T Consensus 13 D~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~----~~~v~yi~~ 59 (225)
T PRK09361 13 DELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN----GKKVIYIDT 59 (225)
T ss_pred HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEEC
Confidence 33443 44456778999999999998776655544432 346777754
No 464
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=86.36 E-value=0.44 Score=38.94 Aligned_cols=17 Identities=35% Similarity=0.319 Sum_probs=13.8
Q ss_pred EEEECCCCCchhHHhHH
Q 011884 27 LCINSPTGSGKTLSYAL 43 (475)
Q Consensus 27 ~li~a~tGsGKT~~~~~ 43 (475)
++|.|++|||||+++-.
T Consensus 1 I~i~G~~GsGKtTia~~ 17 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKE 17 (129)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred CEEECCCCCCHHHHHHH
Confidence 57899999999985433
No 465
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=86.10 E-value=0.55 Score=39.23 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.7
Q ss_pred cEEEECCCCCchhHHhHH
Q 011884 26 DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~ 43 (475)
++++.||+|+|||..+-.
T Consensus 1 ~vlL~G~~G~GKt~l~~~ 18 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARE 18 (139)
T ss_dssp EEEEEESSSSSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 479999999999975433
No 466
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=85.98 E-value=0.79 Score=41.45 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=19.1
Q ss_pred EEEECCCCCchhHHhHHHHHHHHhhh
Q 011884 27 LCINSPTGSGKTLSYALPIVQTLSNR 52 (475)
Q Consensus 27 ~li~a~tGsGKT~~~~~~~~~~l~~~ 52 (475)
.+|.||+|||||+ |...+.+.+...
T Consensus 5 qvVIGPPgSGKsT-Yc~g~~~fls~~ 29 (290)
T KOG1533|consen 5 QVVIGPPGSGKST-YCNGMSQFLSAI 29 (290)
T ss_pred eEEEcCCCCCccc-hhhhHHHHHHHh
Confidence 3788999999995 667677766554
No 467
>CHL00095 clpC Clp protease ATP binding subunit
Probab=85.94 E-value=1.1 Score=49.44 Aligned_cols=22 Identities=18% Similarity=0.045 Sum_probs=17.5
Q ss_pred CcEEEECCCCCchhHHhHHHHH
Q 011884 25 RDLCINSPTGSGKTLSYALPIV 46 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~ 46 (475)
+++++.||+|+|||.++-..+.
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 6899999999999986644333
No 468
>PHA00012 I assembly protein
Probab=85.75 E-value=2.3 Score=40.80 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=19.1
Q ss_pred EEEECCCCCchhHHhHHHHHHHHhh
Q 011884 27 LCINSPTGSGKTLSYALPIVQTLSN 51 (475)
Q Consensus 27 ~li~a~tGsGKT~~~~~~~~~~l~~ 51 (475)
-+|.|.+|+|||+.++.-+...+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 4789999999999877656655543
No 469
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=85.70 E-value=5.7 Score=34.57 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=23.8
Q ss_pred cEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHH
Q 011884 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q 71 (475)
.++|.|++|||||..+...+.. . +.+++++......-.+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~----~---~~~~~~iat~~~~~~e 41 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ----S---GLQVLYIATAQPFDDE 41 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH----c---CCCcEeCcCCCCChHH
Confidence 4789999999999865443221 1 2246676654443333
No 470
>PRK08727 hypothetical protein; Validated
Probab=85.44 E-value=1.4 Score=40.55 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=25.7
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHH
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q 71 (475)
+.+++.||+|+|||..+.. +...+... +.+++++.. ..+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a-~~~~~~~~---~~~~~y~~~-~~~~~~ 83 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA-LCAAAEQA---GRSSAYLPL-QAAAGR 83 (233)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHc---CCcEEEEeH-HHhhhh
Confidence 4599999999999975543 33333332 346777653 333433
No 471
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=85.41 E-value=1.1 Score=40.23 Aligned_cols=17 Identities=41% Similarity=0.466 Sum_probs=12.9
Q ss_pred EEEECCCCCchhHHhHH
Q 011884 27 LCINSPTGSGKTLSYAL 43 (475)
Q Consensus 27 ~li~a~tGsGKT~~~~~ 43 (475)
.+|.||||+|||..++.
T Consensus 4 ~~i~GpT~tGKt~~ai~ 20 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIA 20 (233)
T ss_dssp EEEE-STTSSHHHHHHH
T ss_pred EEEECCCCCChhHHHHH
Confidence 57899999999976544
No 472
>PRK13764 ATPase; Provisional
Probab=85.24 E-value=0.82 Score=48.00 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=20.2
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHh
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLS 50 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~ 50 (475)
.+.+++++||||||||+.. .+++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 3577999999999999743 55555554
No 473
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=85.22 E-value=1.4 Score=46.83 Aligned_cols=54 Identities=22% Similarity=0.169 Sum_probs=35.9
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHH--HHHHHhhhhhccc
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD--LALQVNSARCKYC 80 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~--L~~q~~~~~~~~~ 80 (475)
...+++|.|+||+|||..+...+.+.+.. +..++++=|-.. |...+...+++..
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~~----g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIRR----GDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 35889999999999997664444444332 335777767654 6666666665554
No 474
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=85.18 E-value=0.58 Score=44.09 Aligned_cols=38 Identities=13% Similarity=-0.157 Sum_probs=24.7
Q ss_pred ccchhhhhhhhhcCCCCCCC-cEEEECCCCCchhHHhHH
Q 011884 6 LFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~-~~li~a~tGsGKT~~~~~ 43 (475)
+++.+.+++..+...+..+. .+++.||+|+|||+.+..
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 44555666655444344444 588999999999975443
No 475
>PF05729 NACHT: NACHT domain
Probab=85.05 E-value=1.4 Score=37.57 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=25.0
Q ss_pred cEEEECCCCCchhHHhHHHHHHHHhhhhcccc--ceEEEcccHHHHH
Q 011884 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCL--RALVVLPTRDLAL 70 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~--~vlil~Pt~~L~~ 70 (475)
-++|.|++|+|||..+.. +...+........ .+++..+.+....
T Consensus 2 ~l~I~G~~G~GKStll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRK-LAQQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEEECCCCCChHHHHHH-HHHHHHhcCcccccceEEEEEeehhhhh
Confidence 478999999999986544 3334433322221 3444445455444
No 476
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=85.01 E-value=1.1 Score=38.95 Aligned_cols=42 Identities=7% Similarity=-0.019 Sum_probs=27.6
Q ss_pred EEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhh
Q 011884 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA 75 (475)
Q Consensus 27 ~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~ 75 (475)
++|.|++|||||..+...+.. .+.+++++.....+-..|.+.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-------~~~~~~y~at~~~~d~em~~r 43 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-------LGGPVTYIATAEAFDDEMAER 43 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-------cCCCeEEEEccCcCCHHHHHH
Confidence 578999999999755443322 234788887766665554443
No 477
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=85.00 E-value=3.3 Score=42.14 Aligned_cols=76 Identities=9% Similarity=0.197 Sum_probs=55.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC------CcccCCCCCCC
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD------AMTRGMDVEGV 398 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~------~~~~GiDip~~ 398 (475)
..++||.+|+++.+.++++.+.... ..+..+..++|+....+....+ .+..+|||+|+ +....+++..+
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAV 148 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccC
Confidence 3589999999999999988877664 3457889999998776554333 24678999996 12245777788
Q ss_pred cEEEEec
Q 011884 399 NNVVNYD 405 (475)
Q Consensus 399 ~~Vv~~~ 405 (475)
++||+=+
T Consensus 149 ~~lViDE 155 (434)
T PRK11192 149 ETLILDE 155 (434)
T ss_pred CEEEEEC
Confidence 8877644
No 478
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=84.95 E-value=0.55 Score=39.29 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=12.4
Q ss_pred EEEECCCCCchhHH
Q 011884 27 LCINSPTGSGKTLS 40 (475)
Q Consensus 27 ~li~a~tGsGKT~~ 40 (475)
++++||+|||||+.
T Consensus 2 ii~~G~pgsGKSt~ 15 (143)
T PF13671_consen 2 IILCGPPGSGKSTL 15 (143)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 58899999999974
No 479
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=84.88 E-value=0.6 Score=46.96 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=22.8
Q ss_pred hhhhcCCCCCCCcEEEECCCCCchhHHhH
Q 011884 14 WQETIGPGLFERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 14 ~~~~~~~~~~~~~~li~a~tGsGKT~~~~ 42 (475)
++.++..+..++++++.||+|+|||..+-
T Consensus 184 le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 184 IETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 34455566678999999999999998654
No 480
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=84.87 E-value=0.67 Score=48.85 Aligned_cols=49 Identities=20% Similarity=0.147 Sum_probs=39.8
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 79 (475)
.++++.||||||||..+++|.+-.. +..++|+=|--++...++...++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 6899999999999999999876542 225888889999998888777664
No 481
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=84.84 E-value=0.9 Score=41.12 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=17.9
Q ss_pred CcEEEECCCCCchhHHhHHHHH
Q 011884 25 RDLCINSPTGSGKTLSYALPIV 46 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~ 46 (475)
.++++.||+|+|||.+.+..+-
T Consensus 49 P~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHH
Confidence 5799999999999987655443
No 482
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.83 E-value=4.8 Score=41.26 Aligned_cols=74 Identities=16% Similarity=0.308 Sum_probs=55.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-----CcccC-CCCCCC
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRG-MDVEGV 398 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-----~~~~G-iDip~~ 398 (475)
+..+||.+||++.|.++.+...+.+ .......+++||.+.... +++.+. -.+|+|+|+ .++.| +|+..+
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q---~~~l~~-gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQ---LRDLER-GVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHH---HHHHhc-CCcEEEeCChHHHHHHHcCCccccce
Confidence 4579999999999999999988875 344567888888766433 334443 368999995 55666 788888
Q ss_pred cEEEE
Q 011884 399 NNVVN 403 (475)
Q Consensus 399 ~~Vv~ 403 (475)
+++|.
T Consensus 241 ~ylVL 245 (519)
T KOG0331|consen 241 TYLVL 245 (519)
T ss_pred eEEEe
Confidence 88774
No 483
>PRK09354 recA recombinase A; Provisional
Probab=84.75 E-value=2.2 Score=41.66 Aligned_cols=48 Identities=21% Similarity=0.023 Sum_probs=33.6
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHH
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q 71 (475)
.+..|+-+.|.||+|||||..++..+..... .+.+++|+..-..+-..
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~----~G~~~~yId~E~s~~~~ 103 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQK----AGGTAAFIDAEHALDPV 103 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEECCccchHHH
Confidence 4555677889999999999877665555432 35578888765555443
No 484
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=84.60 E-value=0.62 Score=38.67 Aligned_cols=45 Identities=27% Similarity=0.300 Sum_probs=30.0
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHH
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q 71 (475)
.+..+.-+++.|+.|+|||... -.+...+. ..--+.+||-.|++.
T Consensus 18 ~l~~~~~i~l~G~lGaGKTtl~-~~l~~~lg------~~~~v~SPTf~lv~~ 62 (133)
T TIGR00150 18 PLDFGTVVLLKGDLGAGKTTLV-QGLLQGLG------IQGNVTSPTFTLVNE 62 (133)
T ss_pred hCCCCCEEEEEcCCCCCHHHHH-HHHHHHcC------CCCcccCCCeeeeee
Confidence 3445677889999999999633 33444331 123477899888776
No 485
>PRK05636 replicative DNA helicase; Provisional
Probab=84.52 E-value=5.3 Score=41.39 Aligned_cols=46 Identities=7% Similarity=-0.057 Sum_probs=28.6
Q ss_pred hhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 15 ~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
..+...+..|.-++|.|.||+|||..++..+....... +..|+|.+
T Consensus 256 D~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~---g~~v~~fS 301 (505)
T PRK05636 256 DDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKH---NKASVIFS 301 (505)
T ss_pred hhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC---CCeEEEEE
Confidence 34444455556688999999999986655444333222 33577665
No 486
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=84.48 E-value=2.4 Score=43.16 Aligned_cols=56 Identities=9% Similarity=-0.080 Sum_probs=35.3
Q ss_pred hhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc---ccHHHHHH
Q 011884 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL---PTRDLALQ 71 (475)
Q Consensus 13 a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~---Pt~~L~~q 71 (475)
.+..++..+..|.-++|.|+||+|||..++-.+....... +..|++++ |...++..
T Consensus 184 ~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~---g~~vl~~SlEm~~~~i~~R 242 (434)
T TIGR00665 184 DLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKE---GKPVAFFSLEMSAEQLAMR 242 (434)
T ss_pred hhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhC---CCeEEEEeCcCCHHHHHHH
Confidence 3344555566677789999999999976655454433322 34587777 44444444
No 487
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=84.47 E-value=1.2 Score=44.11 Aligned_cols=40 Identities=28% Similarity=0.255 Sum_probs=24.4
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 69 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~ 69 (475)
..++|+.+|||||||+.+.- ++.+. +-|-+|.=|.|-..|
T Consensus 226 KSNvLllGPtGsGKTllaqT--LAr~l----dVPfaIcDcTtLTQA 265 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQT--LARVL----DVPFAICDCTTLTQA 265 (564)
T ss_pred cccEEEECCCCCchhHHHHH--HHHHh----CCCeEEecccchhhc
Confidence 46899999999999985433 22222 333455555554433
No 488
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=84.38 E-value=1.9 Score=47.12 Aligned_cols=75 Identities=12% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhc
Q 011884 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQF 100 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (475)
+...+.+++.||+|+|||..+-..+-. ...-++.+..-++...
T Consensus 484 ~~~~~giLL~GppGtGKT~lakalA~e--------~~~~fi~v~~~~l~~~----------------------------- 526 (733)
T TIGR01243 484 IRPPKGVLLFGPPGTGKTLLAKAVATE--------SGANFIAVRGPEILSK----------------------------- 526 (733)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHh--------cCCCEEEEehHHHhhc-----------------------------
Q ss_pred cccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHHH
Q 011884 101 DSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 180 (475)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~ 180 (475)
.+=.+...+...
T Consensus 527 --------------------------------------------------------------------~vGese~~i~~~ 538 (733)
T TIGR01243 527 --------------------------------------------------------------------WVGESEKAIREI 538 (733)
T ss_pred --------------------------------------------------------------------ccCcHHHHHHHH
Q ss_pred hhcCCCcccCCccEEEEcchHHH
Q 011884 181 INATRGFTLEHLCYLVVDETDRL 203 (475)
Q Consensus 181 l~~~~~~~~~~~~~lVvDE~H~l 203 (475)
+.. ......++|++||+|.+
T Consensus 539 f~~---A~~~~p~iifiDEid~l 558 (733)
T TIGR01243 539 FRK---ARQAAPAIIFFDEIDAI 558 (733)
T ss_pred HHH---HHhcCCEEEEEEChhhh
No 489
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=84.37 E-value=0.83 Score=40.14 Aligned_cols=19 Identities=32% Similarity=0.595 Sum_probs=13.6
Q ss_pred CCcEEEECCCCCchhHHhH
Q 011884 24 ERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~ 42 (475)
...+++.||.|||||..+.
T Consensus 3 ~~~vlL~Gps~SGKTaLf~ 21 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFS 21 (181)
T ss_dssp --EEEEE-STTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4679999999999997443
No 490
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=84.36 E-value=2.1 Score=44.65 Aligned_cols=61 Identities=13% Similarity=0.047 Sum_probs=36.8
Q ss_pred hhhhcC-CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhc
Q 011884 14 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 14 ~~~~~~-~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
+..++. .+-.|+-++|.|++|+|||..++-.+.+.+.+. +.++++++-. +-.+|+.+.+..
T Consensus 20 LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~---ge~~lyis~e-e~~~~i~~~~~~ 81 (509)
T PRK09302 20 FDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRF---DEPGVFVTFE-ESPEDIIRNVAS 81 (509)
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhc---CCCEEEEEcc-CCHHHHHHHHHH
Confidence 344443 455678899999999999986655555444431 4468888622 223444444433
No 491
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=84.29 E-value=1.5 Score=45.99 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=32.5
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
..+++++.|+||||||.+ +..++..+... +.+++|+=|+-+..+..
T Consensus 175 e~~h~li~G~tGsGKs~~-i~~ll~~~~~~---g~~~ii~D~~g~~~~~f 220 (566)
T TIGR02759 175 ETQHILIHGTTGSGKSVA-IRKLLRWIRQR---GDRAIIYDKGCTFTSRF 220 (566)
T ss_pred cccceEEEcCCCCCHHHH-HHHHHHHHHhc---CCeEEEEECCCCeehhh
Confidence 347899999999999963 44466665543 44688888876655443
No 492
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=84.06 E-value=1.3 Score=48.32 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=28.1
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHH
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L 68 (475)
.+.+|+||||+|||... ..++.+..+. .+++++++=+-+..
T Consensus 437 ghT~I~G~tGaGKTvLl-~~llaq~~k~--~~~~iv~fDk~~g~ 477 (796)
T COG3451 437 GHTLIIGPTGAGKTVLL-SFLLAQALKY--GNPQIVAFDKDNGA 477 (796)
T ss_pred CCeEEECCCCCCHHHHH-HHHHHHHHHh--cCCcEEEEcCCCcH
Confidence 58999999999999643 4455444443 23678888776654
No 493
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=83.99 E-value=3.7 Score=42.10 Aligned_cols=75 Identities=12% Similarity=0.244 Sum_probs=54.8
Q ss_pred CeEEEEcCChHHHHHHHHHHhhcCC--CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-----Ccc-cCCCCCCC
Q 011884 327 EKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT-RGMDVEGV 398 (475)
Q Consensus 327 ~~~lvf~~s~~~~~~l~~~l~~~~~--~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-----~~~-~GiDip~~ 398 (475)
.++||.+||++.+.++++.++.... .+..+..++|+.+.....+. +. ...+|+|+|+ .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~---l~-~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDS---LE-HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHH---hc-CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 3789999999999999998887542 25788889999877544333 33 4678999994 222 35778888
Q ss_pred cEEEEec
Q 011884 399 NNVVNYD 405 (475)
Q Consensus 399 ~~Vv~~~ 405 (475)
+.+|+-+
T Consensus 149 ~~lViDE 155 (460)
T PRK11776 149 NTLVLDE 155 (460)
T ss_pred CEEEEEC
Confidence 8887644
No 494
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=83.95 E-value=0.53 Score=46.85 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.0
Q ss_pred CcEEEECCCCCchhHHhHH
Q 011884 25 RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~ 43 (475)
+++++.||||+|||..+-.
T Consensus 48 ~~ILLiGppG~GKT~lAra 66 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIARR 66 (441)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 6899999999999975433
No 495
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=83.89 E-value=1.1 Score=40.73 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=23.1
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhh
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 52 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~ 52 (475)
.+..|.-+.|.||+|||||+ ++.++.-+...
T Consensus 27 ~i~~Ge~vaI~GpSGSGKST--LLniig~ld~p 57 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKST--LLNLLGGLDKP 57 (226)
T ss_pred EEcCCCEEEEECCCCCCHHH--HHHHHhcccCC
Confidence 45567789999999999996 45566655554
No 496
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=83.88 E-value=1.8 Score=47.00 Aligned_cols=82 Identities=12% Similarity=0.010 Sum_probs=0.0
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhcc---ccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhh
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVR---CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQ 99 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~---~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (475)
...++++.||+|+|||..+-..+...+...... +..++.+.++..++..
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~---------------------------- 257 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGT---------------------------- 257 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhccc----------------------------
Q ss_pred ccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHH
Q 011884 100 FDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 179 (475)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~ 179 (475)
...=...+.+..
T Consensus 258 --------------------------------------------------------------------~~~Ge~e~rl~~ 269 (758)
T PRK11034 258 --------------------------------------------------------------------KYRGDFEKRFKA 269 (758)
T ss_pred --------------------------------------------------------------------chhhhHHHHHHH
Q ss_pred HhhcCCCcccCCccEEEEcchHHH
Q 011884 180 HINATRGFTLEHLCYLVVDETDRL 203 (475)
Q Consensus 180 ~l~~~~~~~~~~~~~lVvDE~H~l 203 (475)
.+.. ..-..-.+|++||+|.+
T Consensus 270 l~~~---l~~~~~~ILfIDEIh~L 290 (758)
T PRK11034 270 LLKQ---LEQDTNSILFIDEIHTI 290 (758)
T ss_pred HHHH---HHhcCCCEEEeccHHHH
No 497
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=83.86 E-value=0.99 Score=43.13 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=15.3
Q ss_pred CcEEEECCCCCchhHHhHH
Q 011884 25 RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~ 43 (475)
+-++|.||||||||..++-
T Consensus 5 ~ii~I~GpTasGKS~LAl~ 23 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFH 23 (300)
T ss_pred cEEEEECCCccCHHHHHHH
Confidence 4588999999999976544
No 498
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=83.81 E-value=1.5 Score=48.95 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=28.5
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~ 67 (475)
+.+.+|.|+||||||+..-..+.+.+.. .+++|+|+=|-++
T Consensus 475 n~n~~I~G~TGSGKS~l~~~li~q~~~~---~~~~v~IiD~g~s 515 (893)
T TIGR03744 475 NAHLLILGPTGAGKSATLTNLLMQVMAV---HRPRLFIVEAGNS 515 (893)
T ss_pred cccEEEECCCCCCHHHHHHHHHHHHHHh---cCCEEEEEcCCCC
Confidence 5789999999999997654434433322 2457888877665
No 499
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=83.80 E-value=0.69 Score=43.75 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=16.0
Q ss_pred CCCcEEEECCCCCchhHH
Q 011884 23 FERDLCINSPTGSGKTLS 40 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~ 40 (475)
+++.++++||+|+|||..
T Consensus 32 ~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp CTEEEEEESSTTSSHHHH
T ss_pred cCCcEEEECCCCCchhHH
Confidence 568999999999999973
No 500
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=83.62 E-value=3 Score=40.35 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=26.9
Q ss_pred CCCCcccchhhhhhhhhcCCCCCC---CcEEEECCCCCchhHHhHH
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~---~~~li~a~tGsGKT~~~~~ 43 (475)
|.|...- +|.++...+...+..+ +-.+++||.|+|||..+..
T Consensus 1 m~~~~i~-g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~ 45 (313)
T PRK05564 1 MSFHTII-GHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKE 45 (313)
T ss_pred CChhhcc-CcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHH
Confidence 3443333 4666666555555554 3358999999999986544
Done!