Query 011884
Match_columns 475
No_of_seqs 126 out of 1342
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 17:17:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.2E-50 1.1E-54 407.0 31.3 354 1-463 74-432 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 2.3E-48 8E-53 392.1 29.9 362 1-468 33-412 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 2.6E-48 9E-53 390.9 30.0 343 1-451 55-398 (410)
4 1s2m_A Putative ATP-dependent 100.0 1.1E-47 3.7E-52 385.2 31.1 354 1-466 39-392 (400)
5 3eiq_A Eukaryotic initiation f 100.0 4.3E-48 1.5E-52 389.7 27.9 344 1-451 58-402 (414)
6 1xti_A Probable ATP-dependent 100.0 6.8E-47 2.3E-51 378.0 34.4 344 1-450 26-372 (391)
7 3fht_A ATP-dependent RNA helic 100.0 1.2E-46 4.1E-51 378.8 28.0 344 1-451 43-395 (412)
8 3i5x_A ATP-dependent RNA helic 100.0 2.4E-46 8.1E-51 392.0 30.1 361 1-449 90-462 (563)
9 3pey_A ATP-dependent RNA helic 100.0 3.1E-46 1.1E-50 373.4 29.4 339 1-449 23-370 (395)
10 3sqw_A ATP-dependent RNA helic 100.0 3.7E-46 1.3E-50 391.1 29.8 362 1-450 39-412 (579)
11 1hv8_A Putative ATP-dependent 100.0 6.5E-46 2.2E-50 367.4 29.0 337 1-451 24-360 (367)
12 1fuu_A Yeast initiation factor 100.0 9.6E-48 3.3E-52 384.5 13.8 341 1-450 39-380 (394)
13 2z0m_A 337AA long hypothetical 100.0 9.2E-45 3.2E-49 355.0 26.5 324 1-449 12-335 (337)
14 3fmp_B ATP-dependent RNA helic 100.0 1.4E-46 4.8E-51 385.9 12.4 342 1-450 110-461 (479)
15 3fho_A ATP-dependent RNA helic 100.0 7E-45 2.4E-49 374.9 16.6 340 1-450 137-485 (508)
16 1oyw_A RECQ helicase, ATP-depe 100.0 3.2E-43 1.1E-47 362.7 23.4 327 1-447 21-354 (523)
17 2v1x_A ATP-dependent DNA helic 100.0 2.4E-43 8.2E-48 367.3 22.4 331 1-446 40-384 (591)
18 3oiy_A Reverse gyrase helicase 100.0 6.2E-42 2.1E-46 344.9 26.0 332 1-449 18-376 (414)
19 4a2p_A RIG-I, retinoic acid in 100.0 1E-39 3.5E-44 341.2 25.2 338 1-439 3-511 (556)
20 2zj8_A DNA helicase, putative 100.0 8.2E-40 2.8E-44 351.3 21.7 325 1-439 19-390 (720)
21 2ykg_A Probable ATP-dependent 100.0 1E-39 3.5E-44 350.1 21.7 341 1-441 9-521 (696)
22 3l9o_A ATP-dependent RNA helic 100.0 6.4E-39 2.2E-43 354.1 25.7 341 5-463 184-625 (1108)
23 2va8_A SSO2462, SKI2-type heli 100.0 4.6E-39 1.6E-43 345.5 23.6 322 1-437 26-409 (715)
24 2p6r_A Afuhel308 helicase; pro 100.0 2.2E-39 7.4E-44 347.0 20.7 326 1-439 21-391 (702)
25 1wp9_A ATP-dependent RNA helic 100.0 3.2E-38 1.1E-42 323.6 27.6 323 5-439 9-478 (494)
26 3tbk_A RIG-I helicase domain; 100.0 6.4E-39 2.2E-43 334.9 22.3 338 5-442 4-513 (555)
27 4a2q_A RIG-I, retinoic acid in 100.0 1.9E-38 6.5E-43 344.0 26.0 339 1-439 244-752 (797)
28 2xgj_A ATP-dependent RNA helic 100.0 1.9E-38 6.5E-43 347.5 26.1 328 1-447 83-511 (1010)
29 1gku_B Reverse gyrase, TOP-RG; 100.0 2.8E-38 9.7E-43 349.0 23.9 333 1-450 54-468 (1054)
30 4f92_B U5 small nuclear ribonu 100.0 8.4E-39 2.9E-43 364.7 19.7 364 2-469 76-503 (1724)
31 4ddu_A Reverse gyrase; topoiso 100.0 6.4E-38 2.2E-42 346.0 24.5 335 1-449 75-503 (1104)
32 4f92_B U5 small nuclear ribonu 100.0 6.7E-38 2.3E-42 357.3 24.0 344 2-447 923-1319(1724)
33 1gm5_A RECG; helicase, replica 100.0 3.7E-38 1.3E-42 335.1 17.5 318 1-435 365-696 (780)
34 4a2w_A RIG-I, retinoic acid in 100.0 1.6E-37 5.6E-42 340.2 23.2 338 2-439 245-752 (936)
35 4a4z_A Antiviral helicase SKI2 100.0 1.3E-37 4.5E-42 340.8 21.8 344 1-462 36-520 (997)
36 2eyq_A TRCF, transcription-rep 100.0 1.1E-36 3.7E-41 338.3 26.5 318 1-436 600-922 (1151)
37 4gl2_A Interferon-induced heli 100.0 2.2E-37 7.6E-42 332.2 17.6 108 326-435 400-518 (699)
38 2fwr_A DNA repair protein RAD2 100.0 5.1E-37 1.7E-41 314.3 17.9 289 5-432 93-448 (472)
39 2oca_A DAR protein, ATP-depend 100.0 1.4E-36 4.6E-41 314.2 20.4 310 5-434 113-453 (510)
40 1tf5_A Preprotein translocase 100.0 1.1E-35 3.7E-40 310.5 21.5 368 1-449 80-565 (844)
41 2jlq_A Serine protease subunit 100.0 9.4E-35 3.2E-39 294.6 18.4 287 2-434 1-309 (451)
42 1yks_A Genome polyprotein [con 100.0 1.2E-35 4.2E-40 299.8 10.1 281 20-448 4-314 (440)
43 2whx_A Serine protease/ntpase/ 100.0 1.4E-34 4.9E-39 302.2 18.1 300 4-448 170-493 (618)
44 2fsf_A Preprotein translocase 100.0 5.6E-34 1.9E-38 296.7 20.9 342 2-437 72-584 (853)
45 1nkt_A Preprotein translocase 100.0 2.7E-33 9.3E-38 291.8 25.8 382 1-465 108-651 (922)
46 3h1t_A Type I site-specific re 100.0 9.2E-34 3.1E-38 297.9 20.1 308 5-425 178-545 (590)
47 2wv9_A Flavivirin protease NS2 100.0 3.1E-34 1.1E-38 301.4 14.9 301 5-446 215-546 (673)
48 2z83_A Helicase/nucleoside tri 100.0 7.9E-33 2.7E-37 281.0 20.5 271 20-436 17-313 (459)
49 3o8b_A HCV NS3 protease/helica 100.0 3.3E-33 1.1E-37 289.4 17.4 272 17-439 225-517 (666)
50 2v6i_A RNA helicase; membrane, 100.0 2.5E-32 8.5E-37 275.1 22.1 269 24-433 2-287 (431)
51 2xau_A PRE-mRNA-splicing facto 100.0 2.6E-32 8.8E-37 292.0 21.6 316 4-438 92-445 (773)
52 3dmq_A RNA polymerase-associat 100.0 2.5E-32 8.5E-37 299.6 19.5 122 310-433 487-610 (968)
53 1z63_A Helicase of the SNF2/RA 100.0 1.4E-31 4.6E-36 276.0 16.9 122 312-436 325-453 (500)
54 3rc3_A ATP-dependent RNA helic 100.0 9.1E-31 3.1E-35 274.3 18.7 286 23-449 154-457 (677)
55 3mwy_W Chromo domain-containin 100.0 2.7E-29 9.3E-34 271.6 20.3 135 311-448 555-698 (800)
56 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.7E-28 9.3E-33 265.8 22.8 334 5-450 271-721 (1038)
57 1z3i_X Similar to RAD54-like; 100.0 9.9E-28 3.4E-32 253.2 26.2 121 313-436 400-528 (644)
58 3jux_A Protein translocase sub 100.0 7.9E-28 2.7E-32 245.6 24.1 193 263-465 412-621 (822)
59 3fe2_A Probable ATP-dependent 99.9 2.1E-27 7.2E-32 220.9 14.5 189 1-292 47-239 (242)
60 3ber_A Probable ATP-dependent 99.9 1E-26 3.4E-31 217.0 16.6 187 1-290 61-247 (249)
61 3ly5_A ATP-dependent RNA helic 99.9 7.8E-27 2.7E-31 219.5 15.4 184 1-286 72-258 (262)
62 1c4o_A DNA nucleotide excision 99.9 1.1E-25 3.7E-30 237.5 24.9 111 325-439 438-553 (664)
63 2pl3_A Probable ATP-dependent 99.9 2.4E-26 8.2E-31 212.9 17.4 188 1-291 43-233 (236)
64 3iuy_A Probable ATP-dependent 99.9 1.6E-26 5.6E-31 212.9 15.3 184 1-288 38-226 (228)
65 1wrb_A DJVLGB; RNA helicase, D 99.9 3.3E-26 1.1E-30 214.3 16.8 194 1-293 41-242 (253)
66 3dkp_A Probable ATP-dependent 99.9 1.2E-26 4.1E-31 216.2 13.3 192 1-292 47-242 (245)
67 3fmo_B ATP-dependent RNA helic 99.9 2.1E-26 7E-31 220.6 14.8 186 1-290 110-297 (300)
68 1vec_A ATP-dependent RNA helic 99.9 3.2E-26 1.1E-30 207.4 14.8 183 1-287 21-204 (206)
69 1t6n_A Probable ATP-dependent 99.9 1.4E-25 4.6E-30 205.5 18.7 185 1-288 32-218 (220)
70 2vl7_A XPD; helicase, unknown 99.9 2.5E-26 8.4E-31 237.6 15.1 396 1-436 4-521 (540)
71 2oxc_A Probable ATP-dependent 99.9 5.2E-26 1.8E-30 209.7 15.5 184 1-289 42-227 (230)
72 1q0u_A Bstdead; DEAD protein, 99.9 2E-26 7E-31 210.9 12.6 192 1-292 22-213 (219)
73 3bor_A Human initiation factor 99.9 2.5E-26 8.6E-31 212.9 12.8 186 1-290 48-234 (237)
74 1qde_A EIF4A, translation init 99.9 5.4E-26 1.8E-30 208.8 13.7 186 1-291 32-217 (224)
75 2d7d_A Uvrabc system protein B 99.9 4E-24 1.4E-28 225.4 28.0 121 314-438 431-558 (661)
76 2gxq_A Heat resistant RNA depe 99.9 2E-25 7E-30 202.3 15.6 184 1-289 19-204 (207)
77 2hjv_A ATP-dependent RNA helic 99.9 2.6E-24 9E-29 187.2 16.0 148 300-450 9-156 (163)
78 2ipc_A Preprotein translocase 99.9 8.9E-24 3E-28 219.7 22.6 131 1-204 76-215 (997)
79 3crv_A XPD/RAD3 related DNA he 99.9 1.4E-24 4.8E-29 225.3 15.8 185 2-205 1-187 (551)
80 2rb4_A ATP-dependent RNA helic 99.9 6.7E-24 2.3E-28 186.9 14.7 150 299-451 6-162 (175)
81 4a15_A XPD helicase, ATP-depen 99.9 1.2E-24 4E-29 227.6 11.6 417 5-437 3-585 (620)
82 1t5i_A C_terminal domain of A 99.9 9.7E-24 3.3E-28 185.1 15.3 148 300-450 5-153 (172)
83 1fuk_A Eukaryotic initiation f 99.9 4.6E-24 1.6E-28 186.1 12.7 148 301-451 4-152 (165)
84 2jgn_A DBX, DDX3, ATP-dependen 99.9 7.7E-24 2.6E-28 187.9 13.3 163 297-465 16-179 (185)
85 3eaq_A Heat resistant RNA depe 99.9 2.6E-23 9E-28 188.7 16.9 144 305-451 10-153 (212)
86 2p6n_A ATP-dependent RNA helic 99.9 2.1E-23 7.3E-28 185.9 13.4 174 281-462 11-185 (191)
87 3i32_A Heat resistant RNA depe 99.9 2.5E-22 8.4E-27 191.0 14.9 146 303-451 5-150 (300)
88 2yjt_D ATP-dependent RNA helic 99.8 6.9E-24 2.4E-28 185.9 0.0 147 301-450 4-151 (170)
89 3b6e_A Interferon-induced heli 99.8 3.2E-20 1.1E-24 168.9 11.6 141 4-209 32-180 (216)
90 1rif_A DAR protein, DNA helica 99.7 1.2E-18 4.1E-23 165.5 8.1 128 5-206 113-240 (282)
91 3llm_A ATP-dependent RNA helic 99.7 3.8E-17 1.3E-21 150.7 11.6 142 5-218 61-205 (235)
92 2fz4_A DNA repair protein RAD2 99.7 1E-17 3.5E-22 154.5 6.7 115 5-207 93-208 (237)
93 1z5z_A Helicase of the SNF2/RA 99.6 3.9E-16 1.3E-20 146.5 10.4 124 310-436 94-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.2 9.9E-07 3.4E-11 92.0 6.8 64 7-76 151-216 (608)
95 3upu_A ATP-dependent DNA helic 98.2 1.2E-06 4.3E-11 88.3 5.8 70 1-73 21-91 (459)
96 4b3f_X DNA-binding protein smu 98.2 3.1E-06 1.1E-10 89.2 8.5 68 5-79 189-256 (646)
97 2gk6_A Regulator of nonsense t 98.1 2.2E-05 7.5E-10 82.2 12.5 69 4-79 179-247 (624)
98 2xzl_A ATP-dependent helicase 98.0 3E-05 1E-09 83.1 13.0 69 4-79 359-427 (802)
99 2wjy_A Regulator of nonsense t 97.9 5E-05 1.7E-09 81.4 12.5 69 4-79 355-423 (800)
100 3e1s_A Exodeoxyribonuclease V, 97.8 3.3E-05 1.1E-09 79.7 7.2 60 5-72 189-248 (574)
101 3lfu_A DNA helicase II; SF1 he 97.3 0.0003 1E-08 74.0 6.9 73 4-82 8-80 (647)
102 1uaa_A REP helicase, protein ( 97.1 0.00085 2.9E-08 70.9 7.6 72 5-82 2-73 (673)
103 1pjr_A PCRA; DNA repair, DNA r 97.0 0.00077 2.6E-08 71.8 7.0 73 4-82 10-82 (724)
104 3hgt_A HDA1 complex subunit 3; 97.0 0.0084 2.9E-07 56.3 12.5 129 309-445 106-246 (328)
105 1xx6_A Thymidine kinase; NESG, 96.7 0.0041 1.4E-07 54.3 7.8 40 24-67 8-47 (191)
106 2b8t_A Thymidine kinase; deoxy 96.6 0.0038 1.3E-07 55.9 7.1 39 24-66 12-50 (223)
107 3vkw_A Replicase large subunit 96.6 0.0033 1.1E-07 61.9 7.1 40 25-73 162-201 (446)
108 1a5t_A Delta prime, HOLB; zinc 96.4 0.004 1.4E-07 59.7 6.4 38 6-43 3-43 (334)
109 2o0j_A Terminase, DNA packagin 96.3 0.029 9.9E-07 54.4 11.6 65 5-75 163-227 (385)
110 2j9r_A Thymidine kinase; TK1, 96.3 0.0061 2.1E-07 53.8 6.1 40 24-67 28-67 (214)
111 2orw_A Thymidine kinase; TMTK, 96.3 0.0057 2E-07 53.0 5.8 39 24-66 3-41 (184)
112 3u4q_A ATP-dependent helicase/ 96.0 0.0076 2.6E-07 68.0 6.7 69 5-79 10-80 (1232)
113 2orv_A Thymidine kinase; TP4A 95.8 0.015 5.3E-07 51.8 6.6 40 24-67 19-58 (234)
114 3e2i_A Thymidine kinase; Zn-bi 95.8 0.015 5.2E-07 51.2 6.4 40 24-67 28-67 (219)
115 3cpe_A Terminase, DNA packagin 95.5 0.0097 3.3E-07 61.7 4.6 66 5-76 163-228 (592)
116 1w4r_A Thymidine kinase; type 95.2 0.031 1.1E-06 48.5 6.3 38 24-65 20-57 (195)
117 1gm5_A RECG; helicase, replica 94.9 0.059 2E-06 57.4 8.5 83 325-407 416-500 (780)
118 2chg_A Replication factor C sm 94.5 0.071 2.4E-06 46.8 7.0 17 25-41 39-55 (226)
119 3oiy_A Reverse gyrase helicase 93.9 0.12 3.9E-06 50.8 7.6 82 325-406 63-148 (414)
120 2zpa_A Uncharacterized protein 93.8 0.047 1.6E-06 56.5 4.7 58 5-71 175-232 (671)
121 2gno_A DNA polymerase III, gam 93.8 0.063 2.2E-06 50.5 5.2 34 10-43 2-37 (305)
122 1iqp_A RFCS; clamp loader, ext 93.5 0.083 2.8E-06 49.8 5.6 34 10-43 30-65 (327)
123 3ec2_A DNA replication protein 93.2 0.046 1.6E-06 46.8 2.9 62 7-72 16-82 (180)
124 2w58_A DNAI, primosome compone 92.3 0.086 3E-06 45.9 3.5 43 25-72 55-97 (202)
125 4ddu_A Reverse gyrase; topoiso 91.4 0.29 1E-05 54.3 7.3 82 325-406 120-205 (1104)
126 2eyq_A TRCF, transcription-rep 91.3 0.72 2.5E-05 51.5 10.2 79 325-403 651-731 (1151)
127 3u61_B DNA polymerase accessor 90.5 0.34 1.2E-05 45.6 5.9 14 191-204 105-118 (324)
128 2zts_A Putative uncharacterize 90.4 0.3 1E-05 43.8 5.2 46 16-64 21-67 (251)
129 3io5_A Recombination and repai 90.4 0.18 6E-06 47.3 3.6 46 20-68 25-70 (333)
130 3n70_A Transport activator; si 90.2 0.14 4.6E-06 42.1 2.5 20 22-41 22-41 (145)
131 1p9r_A General secretion pathw 89.4 0.35 1.2E-05 47.5 5.0 50 7-62 152-201 (418)
132 3hjh_A Transcription-repair-co 89.4 0.58 2E-05 46.8 6.7 76 314-405 371-446 (483)
133 1t6n_A Probable ATP-dependent 89.3 1.4 4.9E-05 38.5 8.8 78 326-406 82-167 (220)
134 2kjq_A DNAA-related protein; s 89.2 0.36 1.2E-05 39.8 4.4 24 17-41 30-53 (149)
135 2w0m_A SSO2452; RECA, SSPF, un 88.8 0.47 1.6E-05 41.9 5.2 47 13-63 11-58 (235)
136 3co5_A Putative two-component 88.4 0.12 4.2E-06 42.3 0.9 18 23-40 26-43 (143)
137 2cvh_A DNA repair and recombin 88.4 0.46 1.6E-05 41.6 4.8 44 13-63 8-52 (220)
138 1tue_A Replication protein E1; 88.4 0.21 7.1E-06 43.6 2.4 27 15-41 49-75 (212)
139 1jbk_A CLPB protein; beta barr 88.1 0.17 5.9E-06 43.0 1.7 19 24-42 43-61 (195)
140 3syl_A Protein CBBX; photosynt 87.9 0.62 2.1E-05 43.4 5.6 20 24-43 67-86 (309)
141 1sxj_D Activator 1 41 kDa subu 87.8 0.4 1.4E-05 45.5 4.3 55 10-65 42-98 (353)
142 3iuy_A Probable ATP-dependent 87.8 1.1 3.6E-05 39.6 6.9 77 325-405 93-175 (228)
143 3dm5_A SRP54, signal recogniti 87.8 2.3 7.9E-05 41.8 9.7 35 25-63 101-135 (443)
144 2qgz_A Helicase loader, putati 87.8 0.54 1.8E-05 44.1 5.0 44 24-72 152-196 (308)
145 2dr3_A UPF0273 protein PH0284; 87.8 0.38 1.3E-05 43.0 3.9 42 20-65 19-60 (247)
146 2p65_A Hypothetical protein PF 87.7 0.17 5.8E-06 42.9 1.4 20 24-43 43-62 (187)
147 2hjv_A ATP-dependent RNA helic 87.3 5.6 0.00019 32.8 10.8 78 55-200 34-112 (163)
148 2r44_A Uncharacterized protein 87.2 0.12 3.9E-06 49.1 0.0 33 9-41 31-63 (331)
149 3ber_A Probable ATP-dependent 87.0 2.5 8.6E-05 37.9 8.9 77 325-405 110-194 (249)
150 3bh0_A DNAB-like replicative h 86.5 0.69 2.3E-05 43.5 5.0 48 13-64 57-104 (315)
151 3hws_A ATP-dependent CLP prote 86.2 0.26 8.7E-06 47.4 1.9 21 23-43 50-70 (363)
152 2chq_A Replication factor C sm 86.0 0.54 1.8E-05 43.8 4.0 34 9-42 21-56 (319)
153 1ofh_A ATP-dependent HSL prote 85.3 0.21 7.1E-06 46.6 0.7 19 24-42 50-68 (310)
154 3nbx_X ATPase RAVA; AAA+ ATPas 85.3 0.15 5.2E-06 51.3 -0.3 32 9-40 26-57 (500)
155 2oap_1 GSPE-2, type II secreti 85.2 0.74 2.5E-05 46.4 4.7 18 23-40 259-276 (511)
156 2gxq_A Heat resistant RNA depe 85.2 3.8 0.00013 35.1 8.9 76 325-405 71-152 (207)
157 1cr0_A DNA primase/helicase; R 85.1 0.94 3.2E-05 41.9 5.1 48 13-63 24-71 (296)
158 3fe2_A Probable ATP-dependent 85.1 2.3 7.8E-05 37.9 7.6 77 325-405 101-184 (242)
159 2eyu_A Twitching motility prot 84.9 0.52 1.8E-05 43.0 3.2 21 21-41 22-42 (261)
160 1e9r_A Conjugal transfer prote 84.9 0.81 2.8E-05 45.1 4.8 45 24-72 53-97 (437)
161 3bgw_A DNAB-like replicative h 84.8 0.87 3E-05 45.0 5.0 47 14-64 187-233 (444)
162 3jvv_A Twitching mobility prot 84.8 0.89 3E-05 43.5 4.9 27 23-50 122-148 (356)
163 1vec_A ATP-dependent RNA helic 84.8 2.8 9.5E-05 36.1 7.8 76 326-405 71-154 (206)
164 3bor_A Human initiation factor 84.4 1.7 5.9E-05 38.6 6.4 78 325-405 97-181 (237)
165 2q6t_A DNAB replication FORK h 84.3 1 3.6E-05 44.5 5.3 48 14-64 190-237 (444)
166 2r6a_A DNAB helicase, replicat 84.2 1.1 3.8E-05 44.5 5.4 49 13-64 192-240 (454)
167 1w36_B RECB, exodeoxyribonucle 84.1 1.3 4.6E-05 49.6 6.6 56 25-80 17-80 (1180)
168 2bjv_A PSP operon transcriptio 84.0 0.56 1.9E-05 42.7 3.0 19 23-41 28-46 (265)
169 4fcw_A Chaperone protein CLPB; 83.8 0.18 6.1E-06 47.2 -0.5 19 25-43 48-66 (311)
170 3bos_A Putative DNA replicatio 83.8 0.63 2.1E-05 41.2 3.2 20 23-42 51-70 (242)
171 2oxc_A Probable ATP-dependent 83.7 2.1 7.3E-05 37.7 6.7 76 325-405 91-174 (230)
172 2ewv_A Twitching motility prot 83.5 1.1 3.8E-05 43.2 5.0 28 21-49 133-160 (372)
173 1oyw_A RECQ helicase, ATP-depe 83.3 2.3 7.8E-05 43.0 7.5 59 326-387 65-123 (523)
174 1sxj_C Activator 1 40 kDa subu 83.2 0.35 1.2E-05 46.0 1.3 34 10-43 30-65 (340)
175 1l8q_A Chromosomal replication 83.2 1.6 5.6E-05 40.8 6.0 43 24-71 37-79 (324)
176 3cf0_A Transitional endoplasmi 83.0 0.77 2.6E-05 42.8 3.6 21 22-42 47-67 (301)
177 1sxj_E Activator 1 40 kDa subu 83.0 0.73 2.5E-05 43.8 3.5 34 9-42 18-54 (354)
178 4a1f_A DNAB helicase, replicat 82.9 1.2 4.2E-05 42.1 4.9 47 14-64 36-82 (338)
179 3vaa_A Shikimate kinase, SK; s 82.9 0.73 2.5E-05 39.9 3.2 21 23-43 24-44 (199)
180 3h4m_A Proteasome-activating n 82.9 0.8 2.7E-05 42.0 3.6 19 23-41 50-68 (285)
181 1fuk_A Eukaryotic initiation f 82.8 9.4 0.00032 31.4 10.1 76 55-198 29-105 (165)
182 2rb4_A ATP-dependent RNA helic 82.7 9.9 0.00034 31.7 10.3 75 55-197 33-108 (175)
183 2v1x_A ATP-dependent DNA helic 82.7 3.7 0.00013 42.2 8.8 59 326-387 84-144 (591)
184 2c9o_A RUVB-like 1; hexameric 82.5 0.87 3E-05 45.3 3.9 22 22-43 61-82 (456)
185 2zr9_A Protein RECA, recombina 82.5 1.1 3.8E-05 42.7 4.5 46 15-64 50-97 (349)
186 3te6_A Regulatory protein SIR3 82.3 0.58 2E-05 44.0 2.4 27 23-50 44-70 (318)
187 1kgd_A CASK, peripheral plasma 82.3 0.85 2.9E-05 38.8 3.3 19 23-41 4-22 (180)
188 2qz4_A Paraplegin; AAA+, SPG7, 82.2 0.85 2.9E-05 41.2 3.4 19 24-42 39-57 (262)
189 1wrb_A DJVLGB; RNA helicase, D 81.9 8.8 0.0003 34.1 10.3 76 326-405 100-182 (253)
190 2ehv_A Hypothetical protein PH 81.9 1.7 5.8E-05 38.7 5.4 24 20-43 26-49 (251)
191 2r2a_A Uncharacterized protein 81.8 0.89 3E-05 39.5 3.2 18 26-43 7-24 (199)
192 3lw7_A Adenylate kinase relate 81.8 0.62 2.1E-05 38.9 2.2 17 26-42 3-19 (179)
193 2qmh_A HPR kinase/phosphorylas 81.8 0.76 2.6E-05 39.9 2.7 18 24-41 34-51 (205)
194 1lvg_A Guanylate kinase, GMP k 81.7 0.86 2.9E-05 39.5 3.1 19 23-41 3-21 (198)
195 1zp6_A Hypothetical protein AT 81.7 0.73 2.5E-05 39.3 2.7 21 21-41 6-26 (191)
196 3a8t_A Adenylate isopentenyltr 81.6 0.77 2.6E-05 43.4 2.9 19 25-43 41-59 (339)
197 3ly5_A ATP-dependent RNA helic 81.6 4.9 0.00017 36.3 8.4 77 325-405 125-209 (262)
198 2qor_A Guanylate kinase; phosp 81.4 1.1 3.6E-05 39.0 3.6 22 20-41 8-29 (204)
199 1t5i_A C_terminal domain of A 81.2 8.3 0.00028 32.2 9.2 78 55-200 30-108 (172)
200 1d2n_A N-ethylmaleimide-sensit 81.1 0.78 2.7E-05 41.9 2.8 20 24-43 64-83 (272)
201 2ius_A DNA translocase FTSK; n 81.1 1.4 4.7E-05 44.3 4.7 43 23-65 166-208 (512)
202 3exa_A TRNA delta(2)-isopenten 81.1 0.84 2.9E-05 42.7 2.9 18 26-43 5-22 (322)
203 1u94_A RECA protein, recombina 81.0 1.5 5.2E-05 41.9 4.9 41 20-64 59-99 (356)
204 3foz_A TRNA delta(2)-isopenten 81.0 0.84 2.9E-05 42.6 2.9 18 26-43 12-29 (316)
205 3trf_A Shikimate kinase, SK; a 81.0 0.92 3.1E-05 38.5 3.0 20 24-43 5-24 (185)
206 3u4q_B ATP-dependent helicase/ 80.9 1.2 4.1E-05 50.0 4.7 52 28-81 5-56 (1166)
207 2iut_A DNA translocase FTSK; n 80.9 1.3 4.5E-05 44.9 4.5 44 23-66 213-256 (574)
208 3tau_A Guanylate kinase, GMP k 80.8 0.96 3.3E-05 39.5 3.2 19 23-41 7-25 (208)
209 1u0j_A DNA replication protein 80.8 1.2 4.2E-05 40.5 3.9 18 25-42 105-122 (267)
210 3uk6_A RUVB-like 2; hexameric 80.8 1 3.4E-05 43.1 3.5 20 24-43 70-89 (368)
211 2px0_A Flagellar biosynthesis 80.8 1.6 5.6E-05 40.4 4.9 38 23-63 104-141 (296)
212 1ex7_A Guanylate kinase; subst 80.7 0.72 2.5E-05 39.6 2.2 16 25-40 2-17 (186)
213 1njg_A DNA polymerase III subu 80.6 0.39 1.3E-05 42.5 0.5 16 26-41 47-62 (250)
214 3iij_A Coilin-interacting nucl 80.6 1.3 4.5E-05 37.3 3.9 20 23-42 10-29 (180)
215 3b9p_A CG5977-PA, isoform A; A 80.5 0.91 3.1E-05 42.0 3.0 18 24-41 54-71 (297)
216 4b4t_M 26S protease regulatory 80.5 1.1 3.6E-05 44.1 3.6 18 24-41 215-232 (434)
217 2ze6_A Isopentenyl transferase 80.4 0.9 3.1E-05 41.1 2.9 16 27-42 4-19 (253)
218 4b4t_J 26S protease regulatory 80.3 1.1 3.8E-05 43.4 3.6 19 23-41 181-199 (405)
219 3tr0_A Guanylate kinase, GMP k 80.2 1.1 3.7E-05 38.7 3.3 19 23-41 6-24 (205)
220 4ag6_A VIRB4 ATPase, type IV s 79.9 1.8 6.2E-05 41.9 5.1 41 23-67 34-74 (392)
221 1qhx_A CPT, protein (chloramph 79.8 0.83 2.8E-05 38.5 2.3 17 25-41 4-20 (178)
222 2j41_A Guanylate kinase; GMP, 79.8 1.1 3.9E-05 38.6 3.3 19 23-41 5-23 (207)
223 2jgn_A DBX, DDX3, ATP-dependen 79.8 6.1 0.00021 33.5 7.9 21 55-75 45-65 (185)
224 1xp8_A RECA protein, recombina 79.5 1.6 5.5E-05 41.9 4.5 47 15-65 63-111 (366)
225 2v1u_A Cell division control p 79.2 1 3.4E-05 43.2 3.0 20 24-43 44-63 (387)
226 3hr8_A Protein RECA; alpha and 79.1 1.5 5.2E-05 41.8 4.1 48 14-65 49-98 (356)
227 1xti_A Probable ATP-dependent 79.1 6.7 0.00023 37.4 8.9 77 326-405 76-160 (391)
228 1lv7_A FTSH; alpha/beta domain 79.1 1 3.6E-05 40.6 2.9 18 24-41 45-62 (257)
229 3t15_A Ribulose bisphosphate c 79.0 1.2 4.2E-05 41.2 3.4 18 25-42 37-54 (293)
230 2r8r_A Sensor protein; KDPD, P 79.0 2.1 7.2E-05 37.9 4.7 24 26-49 8-31 (228)
231 1ojl_A Transcriptional regulat 78.9 1.3 4.3E-05 41.4 3.5 19 23-41 24-42 (304)
232 2z4s_A Chromosomal replication 78.9 2.1 7.3E-05 42.2 5.3 39 24-64 130-168 (440)
233 1xwi_A SKD1 protein; VPS4B, AA 78.9 1 3.6E-05 42.3 2.9 18 24-41 45-62 (322)
234 3eie_A Vacuolar protein sortin 78.9 1 3.5E-05 42.3 2.9 19 24-42 51-69 (322)
235 1kag_A SKI, shikimate kinase I 78.7 1.3 4.5E-05 37.0 3.3 18 24-41 4-21 (173)
236 4b4t_K 26S protease regulatory 78.7 1.3 4.4E-05 43.4 3.6 19 23-41 205-223 (428)
237 3vfd_A Spastin; ATPase, microt 78.6 0.9 3.1E-05 44.0 2.4 20 24-43 148-167 (389)
238 1y63_A LMAJ004144AAA protein; 78.5 1.3 4.5E-05 37.7 3.2 19 23-41 9-27 (184)
239 4b4t_L 26S protease subunit RP 78.5 1.3 4.6E-05 43.5 3.6 19 23-41 214-232 (437)
240 1in4_A RUVB, holliday junction 78.4 0.45 1.5E-05 45.2 0.2 17 25-41 52-68 (334)
241 1qde_A EIF4A, translation init 78.2 2.6 8.8E-05 36.9 5.2 76 325-405 81-163 (224)
242 1g5t_A COB(I)alamin adenosyltr 78.0 2.5 8.6E-05 36.4 4.8 35 25-63 29-63 (196)
243 1q57_A DNA primase/helicase; d 78.0 1.5 5.2E-05 44.0 4.0 47 15-64 233-279 (503)
244 1ly1_A Polynucleotide kinase; 78.0 1.2 4.3E-05 37.3 2.9 16 26-41 4-19 (181)
245 2gza_A Type IV secretion syste 78.0 1.8 6.1E-05 41.5 4.3 19 22-40 173-191 (361)
246 4gp7_A Metallophosphoesterase; 77.9 0.77 2.6E-05 38.7 1.5 19 23-41 8-26 (171)
247 3kb2_A SPBC2 prophage-derived 77.9 1.3 4.3E-05 36.9 2.9 17 26-42 3-19 (173)
248 2z43_A DNA repair and recombin 77.9 1.5 5.1E-05 41.3 3.7 46 20-65 103-150 (324)
249 3k1j_A LON protease, ATP-depen 77.8 0.67 2.3E-05 47.9 1.3 33 9-41 45-77 (604)
250 3eaq_A Heat resistant RNA depe 77.7 16 0.00056 31.5 10.3 75 55-197 30-105 (212)
251 3crm_A TRNA delta(2)-isopenten 77.4 1.3 4.3E-05 41.7 2.9 18 26-43 7-24 (323)
252 2qp9_X Vacuolar protein sortin 77.4 1.4 4.7E-05 42.2 3.3 19 24-42 84-102 (355)
253 3b9q_A Chloroplast SRP recepto 77.4 2.6 9E-05 39.1 5.2 37 23-63 99-135 (302)
254 4a74_A DNA repair and recombin 77.2 1.6 5.5E-05 38.3 3.5 24 20-43 21-44 (231)
255 1um8_A ATP-dependent CLP prote 77.0 1.5 5.1E-05 42.2 3.5 20 24-43 72-91 (376)
256 3a00_A Guanylate kinase, GMP k 76.9 1.6 5.4E-05 37.2 3.2 17 25-41 2-18 (186)
257 3b85_A Phosphate starvation-in 76.8 1.4 4.8E-05 38.5 2.9 31 7-41 9-39 (208)
258 1z6g_A Guanylate kinase; struc 76.8 1.6 5.6E-05 38.3 3.4 20 21-40 20-39 (218)
259 1rj9_A FTSY, signal recognitio 76.7 2.8 9.5E-05 39.0 5.1 36 24-63 102-137 (304)
260 2p5t_B PEZT; postsegregational 76.7 1.5 5.2E-05 39.5 3.2 17 25-41 33-49 (253)
261 2r62_A Cell division protease 76.5 0.99 3.4E-05 41.0 1.9 19 24-42 44-62 (268)
262 3ney_A 55 kDa erythrocyte memb 76.5 1.6 5.5E-05 37.8 3.2 18 23-40 18-35 (197)
263 4b4t_I 26S protease regulatory 76.5 1.6 5.5E-05 42.6 3.5 18 24-41 216-233 (437)
264 3d3q_A TRNA delta(2)-isopenten 76.4 1.6 5.3E-05 41.4 3.3 18 26-43 9-26 (340)
265 3f9v_A Minichromosome maintena 76.4 1.4 4.6E-05 45.5 3.1 15 26-40 329-343 (595)
266 1kht_A Adenylate kinase; phosp 76.4 1.5 5.2E-05 37.1 3.0 19 24-42 3-21 (192)
267 3cm0_A Adenylate kinase; ATP-b 76.3 1.2 4.2E-05 37.7 2.4 20 24-43 4-23 (186)
268 2pl3_A Probable ATP-dependent 76.3 5.2 0.00018 35.2 6.7 76 325-405 96-179 (236)
269 3ice_A Transcription terminati 76.2 2.8 9.5E-05 40.4 4.9 32 17-49 167-198 (422)
270 1n0w_A DNA repair protein RAD5 76.1 1.5 5.1E-05 38.9 3.0 32 15-46 14-46 (243)
271 3pxg_A Negative regulator of g 76.0 0.9 3.1E-05 45.3 1.6 20 24-43 201-220 (468)
272 4b4t_H 26S protease regulatory 75.8 1.3 4.3E-05 43.8 2.5 19 23-41 242-260 (467)
273 2x8a_A Nuclear valosin-contain 75.7 2.1 7.1E-05 39.2 3.9 17 25-41 45-61 (274)
274 2v9p_A Replication protein E1; 75.4 1.6 5.5E-05 40.7 3.1 29 13-41 115-143 (305)
275 3pfi_A Holliday junction ATP-d 75.4 1.6 5.5E-05 41.1 3.2 18 25-42 56-73 (338)
276 2qt1_A Nicotinamide riboside k 75.4 1.6 5.5E-05 37.8 3.0 24 18-41 15-38 (207)
277 4eun_A Thermoresistant glucoki 75.4 1.7 6E-05 37.4 3.2 19 23-41 28-46 (200)
278 1knq_A Gluconate kinase; ALFA/ 75.3 1.6 5.5E-05 36.6 2.8 18 24-41 8-25 (175)
279 2pt7_A CAG-ALFA; ATPase, prote 75.3 2.4 8.1E-05 40.0 4.3 17 23-39 170-186 (330)
280 3c8u_A Fructokinase; YP_612366 75.2 2.1 7.2E-05 37.2 3.7 19 23-41 21-39 (208)
281 1nlf_A Regulatory protein REPA 75.2 1.4 4.7E-05 40.5 2.5 30 17-46 23-52 (279)
282 1zuh_A Shikimate kinase; alpha 74.9 1.7 6E-05 36.1 2.9 19 25-43 8-26 (168)
283 3d8b_A Fidgetin-like protein 1 74.8 1.6 5.5E-05 41.7 3.0 20 24-43 117-136 (357)
284 2v54_A DTMP kinase, thymidylat 74.6 2 7E-05 36.9 3.4 19 23-41 3-21 (204)
285 1znw_A Guanylate kinase, GMP k 74.6 1.9 6.4E-05 37.5 3.2 21 21-41 17-37 (207)
286 1ixz_A ATP-dependent metallopr 74.4 1.7 5.8E-05 39.1 2.9 17 25-41 50-66 (254)
287 2rhm_A Putative kinase; P-loop 73.9 1.8 6.2E-05 36.8 2.9 19 24-42 5-23 (193)
288 2db3_A ATP-dependent RNA helic 73.9 9.5 0.00033 37.2 8.5 76 326-405 129-211 (434)
289 2p6n_A ATP-dependent RNA helic 73.9 26 0.00089 29.6 10.3 76 56-199 54-130 (191)
290 3t61_A Gluconokinase; PSI-biol 73.8 1.9 6.4E-05 37.2 2.9 18 25-42 19-36 (202)
291 3fmo_B ATP-dependent RNA helic 73.8 4.4 0.00015 37.5 5.7 73 326-405 162-243 (300)
292 2og2_A Putative signal recogni 73.8 3.7 0.00013 39.2 5.2 37 23-63 156-192 (359)
293 2vhj_A Ntpase P4, P4; non- hyd 73.7 1.3 4.5E-05 41.5 2.0 24 23-46 122-145 (331)
294 1sxj_B Activator 1 37 kDa subu 73.7 1 3.5E-05 41.9 1.3 19 25-43 43-61 (323)
295 3fb4_A Adenylate kinase; psych 73.2 2.3 7.9E-05 37.0 3.4 18 26-43 2-19 (216)
296 1g41_A Heat shock protein HSLU 73.2 1.3 4.4E-05 43.6 1.9 18 24-41 50-67 (444)
297 1ye8_A Protein THEP1, hypothet 73.1 2 6.9E-05 36.4 2.9 16 26-41 2-17 (178)
298 1via_A Shikimate kinase; struc 73.0 2.2 7.5E-05 35.7 3.1 18 26-43 6-23 (175)
299 1hqc_A RUVB; extended AAA-ATPa 73.0 1.8 6.1E-05 40.4 2.8 18 24-41 38-55 (324)
300 3eph_A TRNA isopentenyltransfe 72.9 1.9 6.6E-05 41.7 3.0 18 26-43 4-21 (409)
301 3dc4_A Kinesin-like protein NO 72.8 0.85 2.9E-05 43.3 0.5 36 6-41 71-112 (344)
302 1s96_A Guanylate kinase, GMP k 72.8 2.2 7.5E-05 37.6 3.2 21 20-40 12-32 (219)
303 1zd8_A GTP:AMP phosphotransfer 72.8 1.8 6.2E-05 38.1 2.7 18 24-41 7-24 (227)
304 3dl0_A Adenylate kinase; phosp 72.8 2 6.9E-05 37.4 2.9 18 26-43 2-19 (216)
305 2bdt_A BH3686; alpha-beta prot 72.7 2.1 7.1E-05 36.4 2.9 16 26-41 4-19 (189)
306 4a14_A Kinesin, kinesin-like p 72.5 1.1 3.6E-05 42.7 1.0 36 6-41 60-101 (344)
307 1gvn_B Zeta; postsegregational 72.3 1.6 5.4E-05 40.4 2.2 17 25-41 34-50 (287)
308 2i4i_A ATP-dependent RNA helic 72.3 17 0.00057 34.9 9.8 75 327-405 102-183 (417)
309 1g8p_A Magnesium-chelatase 38 72.2 1.4 4.9E-05 41.6 2.0 18 24-41 45-62 (350)
310 1zak_A Adenylate kinase; ATP:A 72.2 2.3 7.8E-05 37.3 3.2 20 24-43 5-24 (222)
311 3sr0_A Adenylate kinase; phosp 72.1 2.6 9E-05 36.7 3.4 18 26-43 2-19 (206)
312 2zan_A Vacuolar protein sortin 72.1 2 6.7E-05 42.5 3.0 19 24-42 167-185 (444)
313 2iyv_A Shikimate kinase, SK; t 72.0 2.5 8.5E-05 35.7 3.3 19 25-43 3-21 (184)
314 3uie_A Adenylyl-sulfate kinase 72.0 2.1 7.1E-05 36.9 2.8 21 23-43 24-44 (200)
315 1v5w_A DMC1, meiotic recombina 71.9 2.7 9.2E-05 39.9 3.8 52 14-65 111-165 (343)
316 1tev_A UMP-CMP kinase; ploop, 71.9 2.2 7.5E-05 36.2 2.9 18 25-42 4-21 (196)
317 1vma_A Cell division protein F 71.9 3.7 0.00013 38.2 4.6 36 24-63 104-139 (306)
318 3kl4_A SRP54, signal recogniti 71.7 3.1 0.00011 40.8 4.2 35 25-63 98-132 (433)
319 1wp9_A ATP-dependent RNA helic 71.5 28 0.00095 33.7 11.4 120 325-449 51-181 (494)
320 2h58_A Kinesin-like protein KI 71.5 1.2 4E-05 42.1 1.1 35 7-41 59-98 (330)
321 2c95_A Adenylate kinase 1; tra 71.4 2.2 7.5E-05 36.3 2.8 20 23-42 8-27 (196)
322 2qby_A CDC6 homolog 1, cell di 71.3 2.4 8.3E-05 40.4 3.4 19 24-42 45-63 (386)
323 1jr3_A DNA polymerase III subu 71.3 1 3.6E-05 43.0 0.7 17 26-42 40-56 (373)
324 3e70_C DPA, signal recognition 71.3 3.9 0.00013 38.5 4.7 36 24-63 129-164 (328)
325 1aky_A Adenylate kinase; ATP:A 71.3 2.5 8.4E-05 37.0 3.1 20 24-43 4-23 (220)
326 3pvs_A Replication-associated 71.1 2.1 7.3E-05 42.3 2.9 19 25-43 51-69 (447)
327 3pxi_A Negative regulator of g 71.0 0.83 2.8E-05 48.6 -0.1 18 26-43 523-540 (758)
328 2wwf_A Thymidilate kinase, put 71.0 2.8 9.4E-05 36.3 3.4 21 23-43 9-29 (212)
329 1iy2_A ATP-dependent metallopr 71.0 2.2 7.7E-05 38.9 2.9 17 25-41 74-90 (278)
330 1f9v_A Kinesin-like protein KA 70.9 1.7 5.8E-05 41.3 2.1 35 8-42 64-103 (347)
331 1e6c_A Shikimate kinase; phosp 70.7 2.7 9.2E-05 34.9 3.2 18 25-42 3-20 (173)
332 1nks_A Adenylate kinase; therm 70.7 2.1 7.3E-05 36.2 2.5 17 26-42 3-19 (194)
333 1zu4_A FTSY; GTPase, signal re 70.7 4.4 0.00015 38.0 4.9 36 24-63 105-140 (320)
334 1xjc_A MOBB protein homolog; s 70.6 5.2 0.00018 33.6 4.8 34 26-63 6-39 (169)
335 2cdn_A Adenylate kinase; phosp 70.6 2.8 9.4E-05 36.1 3.3 19 24-42 20-38 (201)
336 3lnc_A Guanylate kinase, GMP k 70.6 1.9 6.6E-05 38.1 2.3 19 23-41 26-44 (231)
337 3umf_A Adenylate kinase; rossm 70.1 3.5 0.00012 36.2 3.8 20 24-43 29-48 (217)
338 3bfn_A Kinesin-like protein KI 70.0 1.4 4.6E-05 42.6 1.2 36 6-41 75-116 (388)
339 2pt5_A Shikimate kinase, SK; a 69.8 2.7 9.2E-05 34.8 2.9 16 26-41 2-17 (168)
340 1qf9_A UMP/CMP kinase, protein 69.3 2.4 8.2E-05 35.9 2.6 18 25-42 7-24 (194)
341 1f2t_A RAD50 ABC-ATPase; DNA d 69.3 3 0.0001 34.1 3.1 16 25-40 24-39 (149)
342 3nwj_A ATSK2; P loop, shikimat 69.3 2 6.8E-05 38.8 2.1 32 12-43 33-67 (250)
343 2yhs_A FTSY, cell division pro 69.3 4.7 0.00016 40.2 4.9 36 23-62 292-327 (503)
344 1gku_B Reverse gyrase, TOP-RG; 69.3 4.7 0.00016 44.5 5.5 79 325-405 98-183 (1054)
345 3t0q_A AGR253WP; kinesin, alph 69.2 1.8 6.1E-05 41.2 1.8 26 17-42 77-104 (349)
346 1goj_A Kinesin, kinesin heavy 69.2 1.3 4.5E-05 42.2 0.9 36 6-41 57-98 (355)
347 1htw_A HI0065; nucleotide-bind 69.2 3.2 0.00011 34.4 3.3 20 21-40 30-49 (158)
348 1svm_A Large T antigen; AAA+ f 69.2 2.8 9.7E-05 40.3 3.2 22 20-41 165-186 (377)
349 3pxi_A Negative regulator of g 69.1 1.6 5.5E-05 46.4 1.6 34 10-43 185-220 (758)
350 2bwj_A Adenylate kinase 5; pho 69.1 2.4 8.2E-05 36.2 2.5 18 24-41 12-29 (199)
351 1ak2_A Adenylate kinase isoenz 69.0 3 0.0001 36.9 3.3 20 24-43 16-35 (233)
352 2i3b_A HCR-ntpase, human cance 68.9 3.2 0.00011 35.5 3.3 18 24-41 1-18 (189)
353 2plr_A DTMP kinase, probable t 68.9 2.6 8.9E-05 36.3 2.8 20 24-43 4-23 (213)
354 3cmu_A Protein RECA, recombina 68.9 3.5 0.00012 48.2 4.4 44 20-67 1423-1466(2050)
355 1tf7_A KAIC; homohexamer, hexa 68.8 4.2 0.00014 41.0 4.7 41 11-51 25-66 (525)
356 3hu3_A Transitional endoplasmi 68.7 3 0.0001 41.7 3.4 20 23-42 237-256 (489)
357 1nij_A Hypothetical protein YJ 68.6 3.7 0.00013 38.4 3.9 34 26-65 6-39 (318)
358 2jaq_A Deoxyguanosine kinase; 68.3 2.9 0.0001 35.8 2.9 16 26-41 2-17 (205)
359 3nwn_A Kinesin-like protein KI 68.2 1.2 4E-05 42.6 0.3 33 9-41 84-122 (359)
360 1cke_A CK, MSSA, protein (cyti 68.1 3.3 0.00011 36.2 3.3 18 25-42 6-23 (227)
361 1ukz_A Uridylate kinase; trans 68.1 3 0.0001 35.9 2.9 17 25-41 16-32 (203)
362 3tif_A Uncharacterized ABC tra 68.1 2.3 7.9E-05 37.9 2.2 20 20-39 27-46 (235)
363 2yvu_A Probable adenylyl-sulfa 68.0 2.9 9.8E-05 35.4 2.8 21 23-43 12-32 (186)
364 2pez_A Bifunctional 3'-phospho 68.0 2.9 9.9E-05 35.1 2.8 20 23-42 4-23 (179)
365 3lda_A DNA repair protein RAD5 67.9 3.7 0.00013 39.9 3.8 45 20-64 174-220 (400)
366 1bg2_A Kinesin; motor protein, 67.8 1.4 4.6E-05 41.6 0.7 36 6-41 54-95 (325)
367 1e4v_A Adenylate kinase; trans 67.8 2.6 9E-05 36.7 2.6 17 26-42 2-18 (214)
368 1sxj_A Activator 1 95 kDa subu 67.8 2.7 9.3E-05 42.4 3.0 19 25-43 78-96 (516)
369 2pbr_A DTMP kinase, thymidylat 67.7 3.1 0.00011 35.3 2.9 17 27-43 3-19 (195)
370 3lre_A Kinesin-like protein KI 67.3 1.7 5.8E-05 41.4 1.2 35 7-41 83-123 (355)
371 1s2m_A Putative ATP-dependent 67.1 14 0.00047 35.3 7.8 77 325-405 88-171 (400)
372 1jjv_A Dephospho-COA kinase; P 67.0 3.2 0.00011 35.7 2.9 16 26-41 4-19 (206)
373 2l82_A Designed protein OR32; 66.9 38 0.0013 25.4 10.0 46 330-378 6-51 (162)
374 2vli_A Antibiotic resistance p 66.8 2.7 9.1E-05 35.3 2.3 19 24-42 5-23 (183)
375 3be4_A Adenylate kinase; malar 66.6 2.9 0.0001 36.5 2.6 20 24-43 5-24 (217)
376 2v3c_C SRP54, signal recogniti 66.5 5.5 0.00019 39.0 4.8 35 25-63 100-134 (432)
377 2z0h_A DTMP kinase, thymidylat 66.5 3.4 0.00011 35.2 2.9 17 27-43 3-19 (197)
378 3asz_A Uridine kinase; cytidin 66.5 2.8 9.5E-05 36.3 2.4 18 24-41 6-23 (211)
379 1c9k_A COBU, adenosylcobinamid 66.4 3.5 0.00012 35.1 2.9 34 27-68 2-35 (180)
380 1r6b_X CLPA protein; AAA+, N-t 66.3 1 3.4E-05 48.0 -0.7 17 26-42 490-506 (758)
381 3tqc_A Pantothenate kinase; bi 66.3 6 0.00021 37.0 4.8 16 26-41 94-109 (321)
382 3a4m_A L-seryl-tRNA(SEC) kinas 66.0 3.3 0.00011 37.4 2.9 20 24-43 4-23 (260)
383 2vvg_A Kinesin-2; motor protei 66.0 1.5 5.2E-05 41.6 0.6 36 6-41 66-107 (350)
384 3m6a_A ATP-dependent protease 65.8 4.3 0.00015 41.2 4.0 20 23-42 107-126 (543)
385 1nn5_A Similar to deoxythymidy 65.8 3.5 0.00012 35.7 2.9 21 23-43 8-28 (215)
386 1pzn_A RAD51, DNA repair and r 65.8 3.3 0.00011 39.4 3.0 26 20-45 127-152 (349)
387 1m7g_A Adenylylsulfate kinase; 65.8 3.7 0.00013 35.6 3.1 20 23-42 24-43 (211)
388 3tlx_A Adenylate kinase 2; str 65.7 3.4 0.00012 36.9 2.9 20 24-43 29-48 (243)
389 2qby_B CDC6 homolog 3, cell di 65.6 3.1 0.00011 39.8 2.8 20 24-43 45-64 (384)
390 2jeo_A Uridine-cytidine kinase 65.5 3.5 0.00012 36.8 2.9 19 23-41 24-42 (245)
391 2zfi_A Kinesin-like protein KI 65.4 1.5 5E-05 42.1 0.4 34 8-41 68-107 (366)
392 2xb4_A Adenylate kinase; ATP-b 65.3 3.6 0.00012 36.1 2.9 18 26-43 2-19 (223)
393 3kta_A Chromosome segregation 65.2 3.5 0.00012 34.7 2.7 15 26-40 28-42 (182)
394 2y65_A Kinesin, kinesin heavy 65.1 1.6 5.6E-05 41.7 0.7 36 6-41 61-102 (365)
395 3b6u_A Kinesin-like protein KI 65.1 1.5 5.1E-05 42.1 0.3 36 6-41 78-119 (372)
396 2bbw_A Adenylate kinase 4, AK4 65.1 3.6 0.00012 36.7 2.9 18 24-41 27-44 (246)
397 2if2_A Dephospho-COA kinase; a 64.8 3.3 0.00011 35.6 2.5 16 26-41 3-18 (204)
398 3qf7_A RAD50; ABC-ATPase, ATPa 64.8 3.9 0.00013 39.1 3.3 16 26-41 25-40 (365)
399 1q0u_A Bstdead; DEAD protein, 64.8 3.9 0.00013 35.6 3.1 76 326-405 72-158 (219)
400 1fnn_A CDC6P, cell division co 64.8 3.7 0.00013 39.2 3.2 16 26-41 46-61 (389)
401 2j0s_A ATP-dependent RNA helic 64.5 20 0.00068 34.3 8.5 76 325-404 104-186 (410)
402 1t5c_A CENP-E protein, centrom 64.5 1.3 4.6E-05 42.0 -0.1 36 6-41 54-95 (349)
403 2cbz_A Multidrug resistance-as 64.4 3.2 0.00011 37.0 2.4 20 20-39 27-46 (237)
404 2ce7_A Cell division protein F 64.4 3.5 0.00012 41.0 2.9 17 25-41 50-66 (476)
405 1x88_A Kinesin-like protein KI 64.2 1.3 4.5E-05 42.3 -0.2 36 6-41 65-106 (359)
406 3i32_A Heat resistant RNA depe 64.0 43 0.0015 30.7 10.2 74 56-197 28-102 (300)
407 3dkp_A Probable ATP-dependent 63.7 8.3 0.00028 34.1 5.1 77 326-405 98-183 (245)
408 3cmw_A Protein RECA, recombina 63.7 6.2 0.00021 45.5 5.1 47 14-64 22-70 (1706)
409 2rep_A Kinesin-like protein KI 63.5 2.6 8.8E-05 40.5 1.7 35 7-41 94-133 (376)
410 3gbj_A KIF13B protein; kinesin 63.3 1.5 5.1E-05 41.8 -0.0 34 8-41 71-110 (354)
411 4e22_A Cytidylate kinase; P-lo 63.1 4.4 0.00015 36.4 3.2 19 23-41 26-44 (252)
412 2nr8_A Kinesin-like protein KI 62.8 1.7 5.9E-05 41.4 0.3 33 9-41 83-121 (358)
413 1fuu_A Yeast initiation factor 62.7 13 0.00044 35.3 6.7 76 325-405 88-170 (394)
414 3cmu_A Protein RECA, recombina 62.7 5.8 0.0002 46.5 4.6 41 20-64 1077-1117(2050)
415 2d7d_A Uvrabc system protein B 62.6 29 0.001 35.9 9.7 80 55-202 444-524 (661)
416 1ry6_A Internal kinesin; kines 62.6 3.5 0.00012 39.3 2.4 37 6-42 60-103 (360)
417 3vkg_A Dynein heavy chain, cyt 62.5 4.8 0.00016 49.3 4.0 67 6-73 888-954 (3245)
418 1sgw_A Putative ABC transporte 62.2 3.5 0.00012 36.1 2.2 20 21-40 32-51 (214)
419 4eaq_A DTMP kinase, thymidylat 62.1 5.3 0.00018 35.3 3.4 20 22-41 24-43 (229)
420 2owm_A Nckin3-434, related to 62.1 1.9 6.3E-05 42.5 0.4 34 8-41 115-154 (443)
421 1np6_A Molybdopterin-guanine d 61.9 6.6 0.00023 33.1 3.8 25 25-50 7-31 (174)
422 3i5x_A ATP-dependent RNA helic 61.5 75 0.0026 31.8 12.5 80 55-199 338-418 (563)
423 1c4o_A DNA nucleotide excision 61.4 34 0.0012 35.5 9.9 79 55-201 438-517 (664)
424 1uf9_A TT1252 protein; P-loop, 61.4 4.1 0.00014 34.8 2.5 17 25-41 9-25 (203)
425 2ghi_A Transport protein; mult 61.3 3.9 0.00013 37.1 2.4 20 21-40 43-62 (260)
426 1r6b_X CLPA protein; AAA+, N-t 61.3 2.8 9.7E-05 44.5 1.7 20 24-43 207-226 (758)
427 2zu0_C Probable ATP-dependent 60.9 4.7 0.00016 36.7 2.9 20 21-40 43-62 (267)
428 1ypw_A Transitional endoplasmi 60.9 4.5 0.00015 43.3 3.2 20 22-41 236-255 (806)
429 2grj_A Dephospho-COA kinase; T 60.6 5.1 0.00017 34.4 2.9 19 25-43 13-31 (192)
430 2qm8_A GTPase/ATPase; G protei 60.6 9.4 0.00032 36.0 5.1 47 13-63 44-90 (337)
431 4etp_A Kinesin-like protein KA 60.6 3.8 0.00013 39.8 2.3 21 22-42 137-159 (403)
432 2xxa_A Signal recognition part 60.6 7.9 0.00027 37.9 4.6 36 25-63 101-136 (433)
433 3gfo_A Cobalt import ATP-bindi 60.6 3.6 0.00012 37.7 2.0 21 20-40 30-50 (275)
434 1j8m_F SRP54, signal recogniti 60.5 8.2 0.00028 35.7 4.5 36 24-63 98-133 (297)
435 1qvr_A CLPB protein; coiled co 60.4 1.4 4.9E-05 47.5 -0.8 37 9-45 562-609 (854)
436 1ls1_A Signal recognition part 60.4 8.5 0.00029 35.5 4.6 37 23-63 97-133 (295)
437 1vht_A Dephospho-COA kinase; s 60.3 5 0.00017 34.9 2.9 17 25-41 5-21 (218)
438 2pze_A Cystic fibrosis transme 60.2 3.7 0.00013 36.4 2.0 19 21-39 31-49 (229)
439 1g6h_A High-affinity branched- 60.2 3.5 0.00012 37.3 1.9 20 20-39 29-48 (257)
440 3qks_A DNA double-strand break 60.2 5.8 0.0002 34.3 3.3 17 25-41 24-40 (203)
441 1tf5_A Preprotein translocase 60.1 17 0.00058 38.6 7.2 73 325-403 123-209 (844)
442 1mv5_A LMRA, multidrug resista 59.8 3.7 0.00013 36.7 2.0 20 20-39 24-43 (243)
443 2i1q_A DNA repair and recombin 59.6 4.5 0.00015 37.8 2.6 28 20-47 94-121 (322)
444 2ff7_A Alpha-hemolysin translo 59.6 3.8 0.00013 36.8 2.0 20 21-40 32-51 (247)
445 2fsf_A Preprotein translocase 59.5 15 0.00051 39.0 6.7 73 325-403 114-200 (853)
446 3nh6_A ATP-binding cassette SU 59.2 3.4 0.00012 38.4 1.7 20 21-40 77-96 (306)
447 3tbk_A RIG-I helicase domain; 59.0 12 0.00042 37.4 6.0 76 326-405 52-135 (555)
448 3b6e_A Interferon-induced heli 58.9 7.9 0.00027 33.2 4.0 77 325-405 81-170 (216)
449 3aez_A Pantothenate kinase; tr 58.8 6.7 0.00023 36.5 3.7 21 21-41 87-107 (312)
450 3bs4_A Uncharacterized protein 58.8 9.1 0.00031 34.6 4.4 41 20-64 17-57 (260)
451 1vpl_A ABC transporter, ATP-bi 58.7 4.5 0.00016 36.5 2.4 19 21-39 38-56 (256)
452 3auy_A DNA double-strand break 58.7 5.7 0.00019 38.0 3.2 16 25-40 26-41 (371)
453 2d2e_A SUFC protein; ABC-ATPas 58.6 4.8 0.00017 36.1 2.6 20 21-40 26-45 (250)
454 3fht_A ATP-dependent RNA helic 58.6 50 0.0017 31.3 10.1 75 55-197 265-340 (412)
455 4akg_A Glutathione S-transfera 58.5 4.6 0.00016 48.8 2.9 22 22-43 921-942 (2695)
456 1v8k_A Kinesin-like protein KI 58.3 4 0.00014 39.6 2.0 37 6-42 131-173 (410)
457 1rz3_A Hypothetical protein rb 58.2 5.7 0.0002 34.1 2.9 18 24-41 22-39 (201)
458 2ixe_A Antigen peptide transpo 58.2 4.7 0.00016 36.7 2.4 19 21-39 42-60 (271)
459 4g1u_C Hemin import ATP-bindin 58.0 4.2 0.00014 37.0 2.0 19 21-39 34-52 (266)
460 3tqf_A HPR(Ser) kinase; transf 58.0 5.1 0.00018 33.8 2.4 21 23-43 15-35 (181)
461 1b0u_A Histidine permease; ABC 58.0 4.7 0.00016 36.5 2.4 19 21-39 29-47 (262)
462 2yz2_A Putative ABC transporte 57.9 4.8 0.00016 36.6 2.4 21 20-40 29-49 (266)
463 1ltq_A Polynucleotide kinase; 57.7 5.6 0.00019 36.6 2.9 16 26-41 4-19 (301)
464 2obl_A ESCN; ATPase, hydrolase 57.6 5.6 0.00019 37.7 2.9 29 11-40 59-87 (347)
465 2pcj_A ABC transporter, lipopr 57.6 3.8 0.00013 36.1 1.6 19 21-39 27-45 (224)
466 2olj_A Amino acid ABC transpor 57.6 4.9 0.00017 36.5 2.4 19 21-39 47-65 (263)
467 1ji0_A ABC transporter; ATP bi 57.5 4.4 0.00015 36.2 2.0 19 21-39 29-47 (240)
468 2f1r_A Molybdopterin-guanine d 57.3 3.3 0.00011 34.8 1.1 16 26-41 4-19 (171)
469 1q3t_A Cytidylate kinase; nucl 57.2 6.8 0.00023 34.6 3.3 20 23-42 15-34 (236)
470 2dhr_A FTSH; AAA+ protein, hex 57.2 5.5 0.00019 39.8 2.9 17 25-41 65-81 (499)
471 1odf_A YGR205W, hypothetical 3 57.1 5.9 0.0002 36.5 2.9 17 25-41 32-48 (290)
472 1uj2_A Uridine-cytidine kinase 56.8 6.1 0.00021 35.3 2.9 17 26-42 24-40 (252)
473 2p6r_A Afuhel308 helicase; pro 56.8 17 0.00059 37.9 6.8 113 326-445 68-192 (702)
474 3cob_A Kinesin heavy chain-lik 56.5 3.8 0.00013 39.2 1.5 36 6-41 57-97 (369)
475 1hv8_A Putative ATP-dependent 56.4 24 0.00083 32.8 7.3 76 325-405 73-155 (367)
476 2qi9_C Vitamin B12 import ATP- 56.4 4.6 0.00016 36.3 2.0 19 21-39 23-41 (249)
477 2ga8_A Hypothetical 39.9 kDa p 56.4 7.3 0.00025 37.0 3.4 22 21-42 19-42 (359)
478 2wbe_C Bipolar kinesin KRP-130 56.2 4.4 0.00015 38.8 1.9 36 6-41 77-118 (373)
479 4a2p_A RIG-I, retinoic acid in 56.2 16 0.00054 36.7 6.2 76 326-405 55-138 (556)
480 2ihy_A ABC transporter, ATP-bi 56.0 4.7 0.00016 36.9 2.0 19 21-39 44-62 (279)
481 1nkt_A Preprotein translocase 55.8 23 0.00077 37.9 7.3 74 324-403 150-237 (922)
482 3cmw_A Protein RECA, recombina 55.7 10 0.00034 43.8 4.9 41 20-64 728-768 (1706)
483 3l0o_A Transcription terminati 55.6 11 0.00039 36.2 4.6 33 17-50 168-200 (427)
484 2ffh_A Protein (FFH); SRP54, s 55.6 10 0.00035 37.0 4.5 36 24-63 98-133 (425)
485 3r20_A Cytidylate kinase; stru 55.4 6.8 0.00023 34.8 2.9 19 25-43 10-28 (233)
486 3u06_A Protein claret segregat 55.4 5 0.00017 39.0 2.1 20 22-41 135-156 (412)
487 3ake_A Cytidylate kinase; CMP 55.3 6.9 0.00024 33.4 2.9 18 26-43 4-21 (208)
488 1gtv_A TMK, thymidylate kinase 55.2 3.3 0.00011 35.8 0.8 15 27-41 3-17 (214)
489 2heh_A KIF2C protein; kinesin, 55.2 5.3 0.00018 38.4 2.2 38 6-43 111-154 (387)
490 2nq2_C Hypothetical ABC transp 55.1 4.9 0.00017 36.2 2.0 19 21-39 28-46 (253)
491 4a2q_A RIG-I, retinoic acid in 54.9 20 0.0007 38.1 7.1 76 326-405 296-379 (797)
492 2dpy_A FLII, flagellum-specifi 54.9 9.3 0.00032 37.5 4.1 29 11-40 145-173 (438)
493 2vp4_A Deoxynucleoside kinase; 54.9 6 0.0002 34.9 2.5 18 23-40 19-36 (230)
494 3pey_A ATP-dependent RNA helic 54.6 42 0.0014 31.5 8.8 78 55-200 242-320 (395)
495 2ipc_A Preprotein translocase 54.5 22 0.00077 38.1 7.0 58 324-387 118-176 (997)
496 3cf2_A TER ATPase, transitiona 54.1 6.5 0.00022 41.8 2.9 17 25-41 239-255 (806)
497 4edh_A DTMP kinase, thymidylat 54.0 13 0.00046 32.3 4.6 27 23-50 5-31 (213)
498 3sqw_A ATP-dependent RNA helic 53.6 1.3E+02 0.0046 30.1 12.8 81 55-200 287-368 (579)
499 2f6r_A COA synthase, bifunctio 53.4 6.5 0.00022 35.9 2.5 18 26-43 77-94 (281)
500 3cf2_A TER ATPase, transitiona 53.2 8.2 0.00028 41.0 3.5 18 24-41 511-528 (806)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.2e-50 Score=407.04 Aligned_cols=354 Identities=26% Similarity=0.430 Sum_probs=287.3
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh----ccccceEEEcccHHHHHHHhhhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLPTRDLALQVNSAR 76 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~----~~~~~vlil~Pt~~L~~q~~~~~ 76 (475)
+||.+|+|+|.+|+..++ ++++++++||||||||++|++|++..+.... ..++++||++||++|+.|++
T Consensus 74 ~g~~~pt~iQ~~ai~~i~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~--- 146 (434)
T 2db3_A 74 SGYKIPTPIQKCSIPVIS----SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIF--- 146 (434)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHH---
T ss_pred cCCCCCCHHHHHHHHHHh----cCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHH---
Confidence 589999999999988765 4899999999999999999999998886542 13568999999999999954
Q ss_pred hcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCc
Q 011884 77 CKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 156 (475)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (475)
+.+.++....++++.+++|+.....+..
T Consensus 147 ------------------------------------~~~~~~~~~~~~~~~~~~gg~~~~~~~~---------------- 174 (434)
T 2db3_A 147 ------------------------------------NEARKFAFESYLKIGIVYGGTSFRHQNE---------------- 174 (434)
T ss_dssp ------------------------------------HHHHHHTTTSSCCCCEECTTSCHHHHHH----------------
T ss_pred ------------------------------------HHHHHHhccCCcEEEEEECCCCHHHHHH----------------
Confidence 4455556666788899999887655533
Q ss_pred hhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccc
Q 011884 157 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 236 (475)
Q Consensus 157 ~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~ 236 (475)
.+..+++|+|+||++|.+++.... ..+.+++++|+||||++.+.++...+..++......
T Consensus 175 -----~l~~~~~Ivv~Tp~~l~~~l~~~~-~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~-------------- 234 (434)
T 2db3_A 175 -----CITRGCHVVIATPGRLLDFVDRTF-ITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR-------------- 234 (434)
T ss_dssp -----HHTTCCSEEEECHHHHHHHHHTTS-CCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSC--------------
T ss_pred -----HhhcCCCEEEEChHHHHHHHHhCC-cccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCC--------------
Confidence 233467999999999999988644 668899999999999998888888888887754221
Q ss_pred ccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHH
Q 011884 237 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 316 (475)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (475)
+..+.+++|||++.....+....+.++..+...... .....+.+.........+...
T Consensus 235 ----------------------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~ 291 (434)
T 2db3_A 235 ----------------------PEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIYEVNKYAKRSK 291 (434)
T ss_dssp ----------------------SSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEEECCGGGHHHH
T ss_pred ----------------------CCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEEEeCcHHHHHH
Confidence 123789999999988888887777777666554332 222334444455556677888
Q ss_pred HHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCC
Q 011884 317 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 396 (475)
Q Consensus 317 l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip 396 (475)
+.+++..... ++||||+++..++.+++.|.+.+ ..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|
T Consensus 292 l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~ 367 (434)
T 2db3_A 292 LIEILSEQAD-GTIVFVETKRGADFLASFLSEKE---FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIK 367 (434)
T ss_dssp HHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTT---CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCT
T ss_pred HHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcc
Confidence 8888887654 49999999999999999999876 8899999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEee-chhHHHHHHHHHHhcCCCCCccCCChhhh
Q 011884 397 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRFKKLLQKADNDSCPIHSIPSSLI 463 (475)
Q Consensus 397 ~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 463 (475)
++++||+++.|.++..|+||+||+||.|+.|.++++++ .++...++.+.+.++... ..+|+.|.
T Consensus 368 ~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~---~~vp~~l~ 432 (434)
T 2db3_A 368 NIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSG---QTVPDFLR 432 (434)
T ss_dssp TCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTT---CCCCGGGC
T ss_pred cCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcC---CCCCHHHH
Confidence 99999999999999999999999999999999999998 456666666666665433 35555543
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.3e-48 Score=392.11 Aligned_cols=362 Identities=28% Similarity=0.425 Sum_probs=284.7
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhc-----------------cccceEEEc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-----------------RCLRALVVL 63 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~-----------------~~~~vlil~ 63 (475)
+||..|+|+|.+++..++ .+++++++||||+|||++|++|++..+..... .++++||++
T Consensus 33 ~~~~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 108 (417)
T 2i4i_A 33 TRYTRPTPVQKHAIPIIK----EKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLA 108 (417)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEEC
T ss_pred CCCCCCCHHHHHHHHHHc----cCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEEC
Confidence 489999999999987665 48999999999999999999999988765421 125799999
Q ss_pred ccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHh
Q 011884 64 PTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 143 (475)
Q Consensus 64 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 143 (475)
||++|+.|+++ .+..+....++++..++|+.........
T Consensus 109 Pt~~L~~q~~~---------------------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~-- 147 (417)
T 2i4i_A 109 PTRELAVQIYE---------------------------------------EARKFSYRSRVRPCVVYGGADIGQQIRD-- 147 (417)
T ss_dssp SSHHHHHHHHH---------------------------------------HHHHHHTTSSCCEEEECSSSCHHHHHHH--
T ss_pred CcHHHHHHHHH---------------------------------------HHHHHhCcCCceEEEEECCCCHHHHHHH--
Confidence 99999999544 4555555567888899998776555432
Q ss_pred hccccccCccCCchhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccc
Q 011884 144 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 223 (475)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~ 223 (475)
+..+++|+|+||+++.+.+.... ..+.++++||+||||++.+.++...+..++.......
T Consensus 148 -------------------~~~~~~I~v~Tp~~l~~~l~~~~-~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~ 207 (417)
T 2i4i_A 148 -------------------LERGCHLLVATPGRLVDMMERGK-IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 207 (417)
T ss_dssp -------------------HTTCCSEEEECHHHHHHHHHTTS-BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCC
T ss_pred -------------------hhCCCCEEEEChHHHHHHHHcCC-cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCC
Confidence 33467999999999999888643 6688999999999999988777777777765322110
Q ss_pred cccccccccccccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhh
Q 011884 224 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES 303 (475)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (475)
....+.+++|||+++....+....+..+......... .....+.+
T Consensus 208 ----------------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~ 252 (417)
T 2i4i_A 208 ----------------------------------KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQ 252 (417)
T ss_dssp ----------------------------------BTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-----CCSSEEE
T ss_pred ----------------------------------cCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC-CCccCceE
Confidence 0123679999999877766666666666554433222 22233334
Q ss_pred hhhhccCCCcHHHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEE
Q 011884 304 YKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 382 (475)
Q Consensus 304 ~~~~~~~~~~~~~l~~~l~~~-~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~i 382 (475)
.........+...+.+++... .++++||||++++.++.+++.|.+.+ ..+..+||+++..+|.++++.|++|+.+|
T Consensus 253 ~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 329 (417)
T 2i4i_A 253 KVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---YACTSIHGDRSQRDREEALHQFRSGKSPI 329 (417)
T ss_dssp EEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHHTSSCE
T ss_pred EEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC---CCeeEecCCCCHHHHHHHHHHHHcCCCCE
Confidence 444455566778888888776 57799999999999999999999876 88999999999999999999999999999
Q ss_pred EEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCCCCCccCCChhh
Q 011884 383 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL 462 (475)
Q Consensus 383 Lv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 462 (475)
||||+++++|+|+|++++||++++|.|+..|+||+||+||.|+.|.++++++..+...++++++.+.... ..++..+
T Consensus 330 lvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~l 406 (417)
T 2i4i_A 330 LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK---QEVPSWL 406 (417)
T ss_dssp EEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTT---CCCCHHH
T ss_pred EEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhc---CcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999888886543 4566665
Q ss_pred hhhhhc
Q 011884 463 IESLRP 468 (475)
Q Consensus 463 ~~~~~~ 468 (475)
.+....
T Consensus 407 ~~~~~~ 412 (417)
T 2i4i_A 407 ENMAYE 412 (417)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 554443
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.6e-48 Score=390.94 Aligned_cols=343 Identities=24% Similarity=0.436 Sum_probs=280.9
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+|+|.+++..++. ++++++++|||+|||++++++++..+... ..+.++||++||++|+.|+
T Consensus 55 ~g~~~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~Pt~~L~~q~-------- 121 (410)
T 2j0s_A 55 YGFEKPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQ-VRETQALILAPTRELAVQI-------- 121 (410)
T ss_dssp HTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTT-SCSCCEEEECSSHHHHHHH--------
T ss_pred cCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhc-cCCceEEEEcCcHHHHHHH--------
Confidence 4899999999999887665 78999999999999999999998876533 2456899999999999995
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.+.+..+....++.+...+|+.........
T Consensus 122 -------------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------------- 151 (410)
T 2j0s_A 122 -------------------------------QKGLLALGDYMNVQCHACIGGTNVGEDIRK------------------- 151 (410)
T ss_dssp -------------------------------HHHHHHHTTTTTCCEEEECTTSCHHHHHHH-------------------
T ss_pred -------------------------------HHHHHHHhccCCeEEEEEECCCCHHHHHHH-------------------
Confidence 445556666667888888888776555433
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
+..+++|+|+||+.+.+.+... ...+..++++|+||+|++.+.++...+..++..+..
T Consensus 152 --~~~~~~ivv~Tp~~l~~~l~~~-~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~------------------- 209 (410)
T 2j0s_A 152 --LDYGQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP------------------- 209 (410)
T ss_dssp --HHHCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCT-------------------
T ss_pred --hhcCCCEEEcCHHHHHHHHHhC-CccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCcc-------------------
Confidence 2345799999999999988864 366788999999999999877776666666654322
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccC-CCcHHHHHH
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPLYLVA 319 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 319 (475)
..+.+++|||++.....+....+.++............ ..+.+....... ..+...+.+
T Consensus 210 -------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~l~~ 269 (410)
T 2j0s_A 210 -------------------ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTL-EGIKQFFVAVEREEWKFDTLCD 269 (410)
T ss_dssp -------------------TCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSC-TTEEEEEEEESSTTHHHHHHHH
T ss_pred -------------------CceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccC-CCceEEEEEeCcHHhHHHHHHH
Confidence 23689999999887777777777776655443332222 223333333333 337788888
Q ss_pred HHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCc
Q 011884 320 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 399 (475)
Q Consensus 320 ~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~ 399 (475)
++.....+++||||+++..++.+++.|.+.+ ..+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|+++
T Consensus 270 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 346 (410)
T 2j0s_A 270 LYDTLTITQAVIFCNTKRKVDWLTEKMREAN---FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVS 346 (410)
T ss_dssp HHHHHTSSEEEEECSSHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEE
T ss_pred HHHhcCCCcEEEEEcCHHHHHHHHHHHHhCC---CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCC
Confidence 8888888899999999999999999999876 8899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCC
Q 011884 400 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 451 (475)
Q Consensus 400 ~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 451 (475)
+||+++.|.++..|+||+||+||.|+.|.++++++..+...++++.+.++..
T Consensus 347 ~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 398 (410)
T 2j0s_A 347 LIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQ 398 (410)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999888754
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.1e-47 Score=385.16 Aligned_cols=354 Identities=28% Similarity=0.480 Sum_probs=283.4
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+|+|.+++..++. ++++++.+|||+|||++++++++..+... ..+.+++|++|+++|+.|+
T Consensus 39 ~g~~~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~-------- 105 (400)
T 1s2m_A 39 AGFEKPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPK-LNKIQALIMVPTRELALQT-------- 105 (400)
T ss_dssp TTCCSCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHHHHHH--------
T ss_pred CCCCCCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhc-cCCccEEEEcCCHHHHHHH--------
Confidence 5899999999999887664 78899999999999999999998876543 2455899999999999995
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.+.+..+....++++...+|+.........
T Consensus 106 -------------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------------- 135 (400)
T 1s2m_A 106 -------------------------------SQVVRTLGKHCGISCMVTTGGTNLRDDILR------------------- 135 (400)
T ss_dssp -------------------------------HHHHHHHTTTTTCCEEEECSSSCHHHHHHH-------------------
T ss_pred -------------------------------HHHHHHHhcccCceEEEEeCCcchHHHHHH-------------------
Confidence 445556666667888888888765544322
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
+..+++|+|+||+++.+.+.... ..+.+++++|+||+|++.+.++...+..++..+..
T Consensus 136 --~~~~~~Ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~------------------- 193 (400)
T 1s2m_A 136 --LNETVHILVGTPGRVLDLASRKV-ADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPP------------------- 193 (400)
T ss_dssp --TTSCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCS-------------------
T ss_pred --hcCCCCEEEEchHHHHHHHHhCC-cccccCCEEEEeCchHhhhhchHHHHHHHHHhCCc-------------------
Confidence 23457999999999998887633 56788999999999999887777777777654322
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHH
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 320 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (475)
..+.+++|||++..........+..+........ .....+.+.........+...+..+
T Consensus 194 -------------------~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~ 252 (400)
T 1s2m_A 194 -------------------THQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTL 252 (400)
T ss_dssp -------------------SCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHHHH
T ss_pred -------------------CceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHHHH
Confidence 2367999999987766666555555544332221 1122233333344455677788888
Q ss_pred HHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcE
Q 011884 321 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 400 (475)
Q Consensus 321 l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~ 400 (475)
+....++++||||++++.++.+++.|++.+ ..+..+||+|+..+|.++++.|++|+.+|||+|+++++|+|+|++++
T Consensus 253 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~ 329 (400)
T 1s2m_A 253 FSKLQINQAIIFCNSTNRVELLAKKITDLG---YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNV 329 (400)
T ss_dssp HHHSCCSEEEEECSSHHHHHHHHHHHHHHT---CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEE
T ss_pred HhhcCCCcEEEEEecHHHHHHHHHHHHhcC---CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCE
Confidence 888888899999999999999999999876 88999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCCCCCccCCChhhhhhh
Q 011884 401 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 466 (475)
Q Consensus 401 Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
||++++|.|+..|.||+||+||.|+.|.|+++++..+...++++++.+.... .+++..+.+.+
T Consensus 330 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~ 392 (400)
T 1s2m_A 330 VINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEI---AAIPATIDKSL 392 (400)
T ss_dssp EEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCC---EECCSSCCGGG
T ss_pred EEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCc---ccccccccccc
Confidence 9999999999999999999999999999999999999999999999886543 34444444433
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.3e-48 Score=389.70 Aligned_cols=344 Identities=25% Similarity=0.431 Sum_probs=267.8
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||..|+++|.+++..++. ++++++.||||+|||+++++++++.+... ..+.+++|++||++|+.|+
T Consensus 58 ~~~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~-------- 124 (414)
T 3eiq_A 58 YGFEKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELD-LKATQALVLAPTRELAQQI-------- 124 (414)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTT-SCSCCEEEECSSHHHHHHH--------
T ss_pred cCCCCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhc-CCceeEEEEeChHHHHHHH--------
Confidence 5899999999999877665 88899999999999999999999877653 2456899999999999995
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.+.+..+....+..+...+|+.........+.
T Consensus 125 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 156 (414)
T 3eiq_A 125 -------------------------------QKVVMALGDYMGASCHACIGGTNVRAEVQKLQ----------------- 156 (414)
T ss_dssp -------------------------------HHHHHHHGGGSCCCEEECCCCTTHHHHHHHHT-----------------
T ss_pred -------------------------------HHHHHHHhcccCceEEEEECCcchHHHHHHHh-----------------
Confidence 44555566666788888888876655543321
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
..+++|+|+||+++.+.+.... ..+..+++||+||||++.+.++...+..++..+..
T Consensus 157 ---~~~~~iiv~T~~~l~~~l~~~~-~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~------------------- 213 (414)
T 3eiq_A 157 ---MEAPHIIVGTPGRVFDMLNRRY-LSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNS------------------- 213 (414)
T ss_dssp ---TTCCSEEEECHHHHHHHHHHTS-SCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCT-------------------
T ss_pred ---cCCCCEEEECHHHHHHHHHcCC-cccccCcEEEEECHHHhhccCcHHHHHHHHHhCCC-------------------
Confidence 1457999999999999887633 66788999999999999877777777777655432
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhh-hccCCCcHHHHHH
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL-ICESKLKPLYLVA 319 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 319 (475)
..+.+++|||++..........+.++............ ..+.+... ......+...+.+
T Consensus 214 -------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 273 (414)
T 3eiq_A 214 -------------------NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL-EGIRQFYINVEREEWKLDTLCD 273 (414)
T ss_dssp -------------------TCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCT-TSCCEEEEECSSSTTHHHHHHH
T ss_pred -------------------CCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCC-CCceEEEEEeChHHhHHHHHHH
Confidence 33689999999887777777777777655444333222 22222222 2334457888888
Q ss_pred HHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCc
Q 011884 320 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 399 (475)
Q Consensus 320 ~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~ 399 (475)
++.....+++||||++++.++.+++.|.+.+ ..+..+||+|+..+|.++++.|++|+.+|||+|+++++|+|+|+++
T Consensus 274 ~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 350 (414)
T 3eiq_A 274 LYETLTITQAVIFINTRRKVDWLTEKMHARD---FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVS 350 (414)
T ss_dssp HHHSSCCSSCEEECSCHHHHHHHHHHHHTTT---CCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCS
T ss_pred HHHhCCCCcEEEEeCCHHHHHHHHHHHHhcC---CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCC
Confidence 8888888899999999999999999999766 8899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCC
Q 011884 400 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 451 (475)
Q Consensus 400 ~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 451 (475)
+||+++.|.|+..|.||+||+||.|+.|.|+++++..+...++++.+.++..
T Consensus 351 ~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 402 (414)
T 3eiq_A 351 LVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS 402 (414)
T ss_dssp CEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999998888754
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=6.8e-47 Score=378.04 Aligned_cols=344 Identities=24% Similarity=0.355 Sum_probs=275.1
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+|+|.+++..++. ++++++.+|||+|||++++++++..+... ..+.++||++||++|+.|++++
T Consensus 26 ~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~P~~~L~~q~~~~----- 95 (391)
T 1xti_A 26 CGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPV-TGQVSVLVMCHTRELAFQISKE----- 95 (391)
T ss_dssp HSCCSCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCC-TTCCCEEEECSCHHHHHHHHHH-----
T ss_pred CCCCCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhccc-CCCeeEEEECCCHHHHHHHHHH-----
Confidence 4898999999999877655 78999999999999999999998876543 2455899999999999996554
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccc-cceEeEccCCCchHHHHHHHhhccccccCccCCchhH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 159 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
+..+.... ++++..++|+.........+..
T Consensus 96 ----------------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------------- 126 (391)
T 1xti_A 96 ----------------------------------YERFSKYMPNVKVAVFFGGLSIKKDEEVLKK--------------- 126 (391)
T ss_dssp ----------------------------------HHHHTTTCTTCCEEEECTTSCHHHHHHHHHH---------------
T ss_pred ----------------------------------HHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc---------------
Confidence 44444333 6788888888776554332221
Q ss_pred HHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHH-HHHHhhHHHHHHhcccccccccccccccccccc
Q 011884 160 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238 (475)
Q Consensus 160 ~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~-~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
..++|+|+||+++...+.... ..+.+++++|+||||++.+ .++...+..++.....
T Consensus 127 -----~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~----------------- 183 (391)
T 1xti_A 127 -----NCPHIVVGTPGRILALARNKS-LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH----------------- 183 (391)
T ss_dssp -----SCCSEEEECHHHHHHHHHTTS-SCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCS-----------------
T ss_pred -----CCCCEEEECHHHHHHHHHcCC-ccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCC-----------------
Confidence 236999999999999887643 5678999999999999865 4565556666554321
Q ss_pred ccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHH
Q 011884 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 318 (475)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 318 (475)
..+.+++|||+++.........+..+...............+...........+...+.
T Consensus 184 ---------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 184 ---------------------EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp ---------------------SSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred ---------------------CceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 23679999999988777776666666655444333333333444444455667788888
Q ss_pred HHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCC
Q 011884 319 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 398 (475)
Q Consensus 319 ~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~ 398 (475)
+++....++++||||+++..++.+++.|.+.+ ..+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++
T Consensus 243 ~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~ 319 (391)
T 1xti_A 243 DLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN---FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV 319 (391)
T ss_dssp HHHHHSCCSEEEEECSCHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTE
T ss_pred HHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccC
Confidence 88888888999999999999999999999876 889999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeech-hHHHHHHHHHHhcC
Q 011884 399 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVKRFKKLLQKADN 450 (475)
Q Consensus 399 ~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~l~~~~~~ 450 (475)
++||+++.|.|+..|.||+||+||.|+.|.++++++.. +...++++.+.++.
T Consensus 320 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 372 (391)
T 1xti_A 320 NIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 372 (391)
T ss_dssp EEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTC
T ss_pred CEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999865 55667777776653
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.2e-46 Score=378.79 Aligned_cols=344 Identities=23% Similarity=0.343 Sum_probs=268.7
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||..|+|+|.+++..++.. .+++++++||||+|||++|+++++..+... ..++++||++||++|+.|+++.
T Consensus 43 ~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~----- 114 (412)
T 3fht_A 43 MGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-NKYPQCLCLSPTYELALQTGKV----- 114 (412)
T ss_dssp TTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHHHHHHHHH-----
T ss_pred cCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhc-CCCCCEEEECCCHHHHHHHHHH-----
Confidence 58999999999999887762 358999999999999999999999877654 3456899999999999996554
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhccc-ccceEeEccCCCchHHHHHHHhhccccccCccCCchhH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPA-VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 159 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
+..+... .+..+....++......
T Consensus 115 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 139 (412)
T 3fht_A 115 ----------------------------------IEQMGKFYPELKLAYAVRGNKLERG--------------------- 139 (412)
T ss_dssp ----------------------------------HHHHTTTSTTCCEEEECTTCCCCTT---------------------
T ss_pred ----------------------------------HHHHHhhcccceEEEeecCcchhhh---------------------
Confidence 3433332 25666666665432211
Q ss_pred HHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHH-HHHHhhHHHHHHhcccccccccccccccccccc
Q 011884 160 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238 (475)
Q Consensus 160 ~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~-~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
....++|+|+||+++.+++.......+.++++||+||||++.+ .++...+..+...+..
T Consensus 140 ---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~----------------- 199 (412)
T 3fht_A 140 ---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR----------------- 199 (412)
T ss_dssp ---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCT-----------------
T ss_pred ---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCC-----------------
Confidence 1234689999999999998776667788999999999999875 4444455555544322
Q ss_pred ccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHH
Q 011884 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 318 (475)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 318 (475)
..+.+++|||+++.........+..+...........................+...+.
T Consensus 200 ---------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 258 (412)
T 3fht_A 200 ---------------------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALC 258 (412)
T ss_dssp ---------------------TCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHH
T ss_pred ---------------------CceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHH
Confidence 23789999999887777777777776665544433322222122222222345677788
Q ss_pred HHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCC
Q 011884 319 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 398 (475)
Q Consensus 319 ~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~ 398 (475)
.++....++++||||+++..++.+++.|.+.+ ..+..+||+|+..+|.++++.|++|+.+|||+|+++++|+|+|++
T Consensus 259 ~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~ 335 (412)
T 3fht_A 259 NLYGAITIAQAMIFCHTRKTASWLAAELSKEG---HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQV 335 (412)
T ss_dssp HHHHHHSSSEEEEECSSHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTE
T ss_pred HHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCC---CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCC
Confidence 88888788999999999999999999999876 889999999999999999999999999999999999999999999
Q ss_pred cEEEEecCC------CCHHHHHHHhhhccccCCCCcEEEEeechh-HHHHHHHHHHhcCC
Q 011884 399 NNVVNYDKP------AYIKTYIHRAGRTARAGQLGRCFTLLHKDE-VKRFKKLLQKADND 451 (475)
Q Consensus 399 ~~Vv~~~~~------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~-~~~~~~l~~~~~~~ 451 (475)
++||+++.| .+...|+||+||+||.|+.|.++++++..+ ...++.+.+.....
T Consensus 336 ~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~ 395 (412)
T 3fht_A 336 SVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKK 395 (412)
T ss_dssp EEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCC
T ss_pred CEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCc
Confidence 999999999 577999999999999999999999998654 77788887777643
No 8
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.4e-46 Score=391.95 Aligned_cols=361 Identities=28% Similarity=0.402 Sum_probs=272.7
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhc---cccceEEEcccHHHHHHHhhhhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPTRDLALQVNSARC 77 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~---~~~~vlil~Pt~~L~~q~~~~~~ 77 (475)
+||.+|+|+|.+++..++.. .+++++++||||||||++|++|++..+..... .+.++||++||++|+.|++++++
T Consensus 90 ~g~~~~~~~Q~~~i~~~l~~--~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~ 167 (563)
T 3i5x_A 90 MEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVK 167 (563)
T ss_dssp TCCSSCCHHHHHHHHHHHSS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHH
Confidence 58999999999998877731 47899999999999999999999998876532 23589999999999999777654
Q ss_pred cccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCch
Q 011884 78 KYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 157 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (475)
++ +..........+...+|+.........+.
T Consensus 168 ~~-----------------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------- 198 (563)
T 3i5x_A 168 KI-----------------------------------HDMNYGLKKYACVSLVGGTDFRAAMNKMN-------------- 198 (563)
T ss_dssp HH-----------------------------------HHHCGGGTTSCEEEECTTSCHHHHHHHHH--------------
T ss_pred HH-----------------------------------HhhccccCceeEEEEECCcCHHHHHHHHh--------------
Confidence 43 11111222456777788776555443321
Q ss_pred hHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccc
Q 011884 158 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 158 ~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
..+++|+|+||+++.+++.......+..+++||+||||++.+.++...++.+...+......
T Consensus 199 ------~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~------------ 260 (563)
T 3i5x_A 199 ------KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK------------ 260 (563)
T ss_dssp ------HHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS------------
T ss_pred ------cCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhcccc------------
Confidence 23579999999999988876433457889999999999998888888888877765432111
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCcc---ccCCchhhhhhhhhccCC-Cc
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET---RYKLPERLESYKLICESK-LK 313 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~ 313 (475)
..+..+.+++|||+++....+....+..+........ .......+.+........ .+
T Consensus 261 -------------------~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (563)
T 3i5x_A 261 -------------------SADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANS 321 (563)
T ss_dssp -------------------CTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHH
T ss_pred -------------------CccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhh
Confidence 1123478999999998777777776666544322211 111112222222222111 11
Q ss_pred ----HHHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC
Q 011884 314 ----PLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 388 (475)
Q Consensus 314 ----~~~l~~~l~~-~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~ 388 (475)
...+...+.. ..++++||||+++..++.+++.|.+....+..+..+||+|+..+|.++++.|++|+.+|||||++
T Consensus 322 ~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~ 401 (563)
T 3i5x_A 322 IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV 401 (563)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch
Confidence 1222233332 46779999999999999999999987444588999999999999999999999999999999999
Q ss_pred cccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhc
Q 011884 389 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 449 (475)
Q Consensus 389 ~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~ 449 (475)
+++|+|+|++++||+++.|.++..|+||+||+||.|+.|.+++++...+...++.+.+...
T Consensus 402 ~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 402 GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp GTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred hhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999987754
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.1e-46 Score=373.44 Aligned_cols=339 Identities=22% Similarity=0.335 Sum_probs=263.8
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||..|+|+|.+++..++.. .+++++++||||+|||++++++++..+... ..+.++||++||++|+.|+
T Consensus 23 ~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~-------- 91 (395)
T 3pey_A 23 MKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-DASPQAICLAPSRELARQT-------- 91 (395)
T ss_dssp TTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTT-CCSCCEEEECSSHHHHHHH--------
T ss_pred CCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccC-CCCccEEEECCCHHHHHHH--------
Confidence 58999999999999888763 338999999999999999999998877543 2456899999999999995
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.+.+..+....+..+...+++......
T Consensus 92 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 118 (395)
T 3pey_A 92 -------------------------------LEVVQEMGKFTKITSQLIVPDSFEKNK---------------------- 118 (395)
T ss_dssp -------------------------------HHHHHHHTTTSCCCEEEESTTSSCTTS----------------------
T ss_pred -------------------------------HHHHHHHhcccCeeEEEEecCchhhhc----------------------
Confidence 444555555566777777765432111
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHH-HHHHhhHHHHHHhccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 239 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~-~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 239 (475)
..+++|+|+||+++.+.+.. ....+.++++||+||||++.+ .++...+..+......
T Consensus 119 ---~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~------------------ 176 (395)
T 3pey_A 119 ---QINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK------------------ 176 (395)
T ss_dssp ---CBCCSEEEECHHHHHHHHHT-TCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCT------------------
T ss_pred ---cCCCCEEEEcHHHHHHHHHc-CCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCC------------------
Confidence 22579999999999998876 336688999999999999876 4555555555544322
Q ss_pred cchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhh-hccCCCcHHHHH
Q 011884 240 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL-ICESKLKPLYLV 318 (475)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 318 (475)
..+.+++|||+++.........+..+............+. +..... ......+...+.
T Consensus 177 --------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~ 235 (395)
T 3pey_A 177 --------------------DTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDA-IKQLYMDCKNEADKFDVLT 235 (395)
T ss_dssp --------------------TCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTT-EEEEEEECSSHHHHHHHHH
T ss_pred --------------------CcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccccccc-ccEEEEEcCchHHHHHHHH
Confidence 2368999999987766766666665554443333222221 222221 122334566777
Q ss_pred HHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCC
Q 011884 319 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 398 (475)
Q Consensus 319 ~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~ 398 (475)
.++....++++||||+++..++.+++.|++.+ ..+..+||+|+..+|.++++.|++|+.+|||+|+++++|+|+|++
T Consensus 236 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~ 312 (395)
T 3pey_A 236 ELYGLMTIGSSIIFVATKKTANVLYGKLKSEG---HEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTV 312 (395)
T ss_dssp HHHTTTTSSEEEEECSCHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTE
T ss_pred HHHHhccCCCEEEEeCCHHHHHHHHHHHHhcC---CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccC
Confidence 77777778899999999999999999999876 889999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCC------CHHHHHHHhhhccccCCCCcEEEEeec-hhHHHHHHHHHHhc
Q 011884 399 NNVVNYDKPA------YIKTYIHRAGRTARAGQLGRCFTLLHK-DEVKRFKKLLQKAD 449 (475)
Q Consensus 399 ~~Vv~~~~~~------s~~~~~Q~~GR~~R~~~~g~~~~~~~~-~~~~~~~~l~~~~~ 449 (475)
++||+++.|. |+..|.||+||+||.|+.|.++++++. ++...++.+.+...
T Consensus 313 ~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 313 SMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp EEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 9999999998 999999999999999999999999976 55566666666655
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.7e-46 Score=391.09 Aligned_cols=362 Identities=28% Similarity=0.396 Sum_probs=273.9
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh---ccccceEEEcccHHHHHHHhhhhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVNSARC 77 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~---~~~~~vlil~Pt~~L~~q~~~~~~ 77 (475)
+||..|+|+|.+++..++.. .+++++++||||+|||++|++|++..+.... ..+.++||++||++|+.|++++++
T Consensus 39 ~g~~~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~ 116 (579)
T 3sqw_A 39 MEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVK 116 (579)
T ss_dssp TTCSSCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHH
Confidence 68999999999998887742 4789999999999999999999998887653 224589999999999999777654
Q ss_pred cccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCch
Q 011884 78 KYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 157 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (475)
++ ...........+...+|+.........+.
T Consensus 117 ~~-----------------------------------~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-------------- 147 (579)
T 3sqw_A 117 KI-----------------------------------HDMNYGLKKYACVSLVGGTDFRAAMNKMN-------------- 147 (579)
T ss_dssp HH-----------------------------------HHHCGGGTTSCEEEECTTSCHHHHHHHHH--------------
T ss_pred HH-----------------------------------HhhcccccceEEEEEECCccHHHHHHHHh--------------
Confidence 43 11111222456777778776555543322
Q ss_pred hHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccc
Q 011884 158 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 158 ~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
..+++|+|+||+++.+++.......+..+++||+||||++.+.++...+..++..+......
T Consensus 148 ------~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~------------ 209 (579)
T 3sqw_A 148 ------KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK------------ 209 (579)
T ss_dssp ------HHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS------------
T ss_pred ------cCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcc------------
Confidence 23579999999999998876434567889999999999998888888887777765431110
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCcc---ccCCchhhhhhhhhccCC-Cc
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET---RYKLPERLESYKLICESK-LK 313 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~ 313 (475)
..+..+.+++|||+++....+....+..+........ .......+.+........ .+
T Consensus 210 -------------------~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 270 (579)
T 3sqw_A 210 -------------------SADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANS 270 (579)
T ss_dssp -------------------CTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHH
T ss_pred -------------------cccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhh
Confidence 1123478999999998877777777766544332211 111112222222222211 11
Q ss_pred ----HHHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC
Q 011884 314 ----PLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 388 (475)
Q Consensus 314 ----~~~l~~~l~~-~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~ 388 (475)
...+...+.. ..+.++||||+++..++.+++.|.+....+..+..+||+|+..+|.++++.|++|+.+|||||++
T Consensus 271 ~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~ 350 (579)
T 3sqw_A 271 IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV 350 (579)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch
Confidence 1222333332 45779999999999999999999987434588999999999999999999999999999999999
Q ss_pred cccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcC
Q 011884 389 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 450 (475)
Q Consensus 389 ~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~ 450 (475)
+++|+|+|++++||++++|.++..|+||+||+||.|+.|.+++++...+...++.+.+....
T Consensus 351 ~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~ 412 (579)
T 3sqw_A 351 GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 412 (579)
T ss_dssp GTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred hhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999887643
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.5e-46 Score=367.42 Aligned_cols=337 Identities=28% Similarity=0.468 Sum_probs=269.3
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+|+|.+++..++. .++++++.+|||+|||++++++++..+... .+.+++|++|+++|+.|+++
T Consensus 24 ~g~~~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~------ 92 (367)
T 1hv8_A 24 KGFEKPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNEN--NGIEAIILTPTRELAIQVAD------ 92 (367)
T ss_dssp HTCCSCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSS--SSCCEEEECSCHHHHHHHHH------
T ss_pred cCCCCCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhccc--CCCcEEEEcCCHHHHHHHHH------
Confidence 4889999999999887765 237999999999999999999988876543 45689999999999999544
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.+..+....++.+...+|+.........+
T Consensus 93 ---------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------------ 121 (367)
T 1hv8_A 93 ---------------------------------EIESLKGNKNLKIAKIYGGKAIYPQIKAL------------------ 121 (367)
T ss_dssp ---------------------------------HHHHHHCSSCCCEEEECTTSCHHHHHHHH------------------
T ss_pred ---------------------------------HHHHHhCCCCceEEEEECCcchHHHHhhc------------------
Confidence 45555555577888888887665543322
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
.+++|+|+||+++.+.+.... ..+.+++++|+||+|++.+.++...+..++.....
T Consensus 122 ----~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~------------------- 177 (367)
T 1hv8_A 122 ----KNANIVVGTPGRILDHINRGT-LNLKNVKYFILDEADEMLNMGFIKDVEKILNACNK------------------- 177 (367)
T ss_dssp ----HTCSEEEECHHHHHHHHHTTC-SCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCS-------------------
T ss_pred ----CCCCEEEecHHHHHHHHHcCC-cccccCCEEEEeCchHhhhhchHHHHHHHHHhCCC-------------------
Confidence 246899999999999887643 56788999999999999776666666666654322
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHH
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 320 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (475)
..+.+++|||+++.........+..+........ ..+...........+...+...
T Consensus 178 -------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~ 233 (367)
T 1hv8_A 178 -------------------DKRILLFSATMPREILNLAKKYMGDYSFIKAKIN-----ANIEQSYVEVNENERFEALCRL 233 (367)
T ss_dssp -------------------SCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS-----SSSEEEEEECCGGGHHHHHHHH
T ss_pred -------------------CceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC-----CCceEEEEEeChHHHHHHHHHH
Confidence 2367999999987665555544444433322211 1222333334455667777777
Q ss_pred HHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcE
Q 011884 321 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 400 (475)
Q Consensus 321 l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~ 400 (475)
+. ..++++||||++++.++.+++.|++.+ ..+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++
T Consensus 234 l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~ 309 (367)
T 1hv8_A 234 LK-NKEFYGLVFCKTKRDTKELASMLRDIG---FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNC 309 (367)
T ss_dssp HC-STTCCEEEECSSHHHHHHHHHHHHHTT---CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSE
T ss_pred Hh-cCCCcEEEEECCHHHHHHHHHHHHhcC---CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCE
Confidence 66 457799999999999999999999876 88999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCC
Q 011884 401 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 451 (475)
Q Consensus 401 Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 451 (475)
||+++.|.|+..|.||+||+||.|+.|.+++++++.+...++.+.+..+..
T Consensus 310 Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 360 (367)
T 1hv8_A 310 VINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLK 360 (367)
T ss_dssp EEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCC
T ss_pred EEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999998887653
No 12
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=9.6e-48 Score=384.51 Aligned_cols=341 Identities=26% Similarity=0.450 Sum_probs=144.0
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+|+|.+++..++. ++++++.+|||+|||++++++++..+... ..++++||++|+++|+.|+
T Consensus 39 ~g~~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~P~~~L~~q~-------- 105 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTS-VKAPQALMLAPTRELALQI-------- 105 (394)
T ss_dssp HTCCSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTT-CCSCCEEEECSSHHHHHHH--------
T ss_pred cCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhcc-CCCCCEEEEcCCHHHHHHH--------
Confidence 4889999999999887655 78999999999999999999998877553 3466899999999999995
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.+.+..+....++++..++|+.........+
T Consensus 106 -------------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------ 136 (394)
T 1fuu_A 106 -------------------------------QKVVMALAFHMDIKVHACIGGTSFVEDAEGL------------------ 136 (394)
T ss_dssp -------------------------------HHHHHHHTTTSCCCEEEECSSCCHHHHHHHH------------------
T ss_pred -------------------------------HHHHHHHhccCCeeEEEEeCCCchHHHHhhc------------------
Confidence 4445555566678889999987765543322
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
.+++|+|+||+++.+.+.... ..+.+++++|+||+|++.+.++...+..++..+..
T Consensus 137 ----~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~------------------- 192 (394)
T 1fuu_A 137 ----RDAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP------------------- 192 (394)
T ss_dssp ----HHCSEEEECHHHHHHHHHTTS-SCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT-------------------
T ss_pred ----CCCCEEEECHHHHHHHHHhCC-cchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCC-------------------
Confidence 146899999999998887643 66788999999999999877777777777665432
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhcc-CCCcHHHHHH
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVA 319 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 319 (475)
..+.+++|||+++.........+..+............ ..+.+...... ...+...+.+
T Consensus 193 -------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 252 (394)
T 1fuu_A 193 -------------------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTL-EGIKQFYVNVEEEEYKYECLTD 252 (394)
T ss_dssp -------------------TCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------------------------
T ss_pred -------------------CceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccC-CCceEEEEEcCchhhHHHHHHH
Confidence 23679999999877666666666666554443322222 22222222222 3336667777
Q ss_pred HHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCc
Q 011884 320 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 399 (475)
Q Consensus 320 ~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~ 399 (475)
++.....+++||||++++.++.+++.|++.+ ..+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|+++
T Consensus 253 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~ 329 (394)
T 1fuu_A 253 LYDSISVTQAVIFCNTRRKVEELTTKLRNDK---FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVS 329 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCCcEEEEECCHHHHHHHHHHHHHcC---CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCC
Confidence 7777777899999999999999999998765 8899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcC
Q 011884 400 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 450 (475)
Q Consensus 400 ~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~ 450 (475)
+||+++.|.++..|.||+||+||.|+.|.++++++.++...++++.+.+..
T Consensus 330 ~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 380 (394)
T 1fuu_A 330 LVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYST 380 (394)
T ss_dssp ---------------------------------------------------
T ss_pred EEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999888876654
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=9.2e-45 Score=355.01 Aligned_cols=324 Identities=28% Similarity=0.420 Sum_probs=250.6
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+|+|.+++..+.. ++++++.+|||+|||++++++++.. +.+++|++|+++|+.|+
T Consensus 12 ~g~~~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~-------~~~~liv~P~~~L~~q~-------- 72 (337)
T 2z0m_A 12 MGFKNFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL-------GMKSLVVTPTRELTRQV-------- 72 (337)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH-------TCCEEEECSSHHHHHHH--------
T ss_pred cCCCCCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh-------cCCEEEEeCCHHHHHHH--------
Confidence 6999999999999887654 7899999999999999998887752 45799999999999995
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.+.+..+....+.++..++|+.........+
T Consensus 73 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 103 (337)
T 2z0m_A 73 -------------------------------ASHIRDIGRYMDTKVAEVYGGMPYKAQINRV------------------ 103 (337)
T ss_dssp -------------------------------HHHHHHHTTTSCCCEEEECTTSCHHHHHHHH------------------
T ss_pred -------------------------------HHHHHHHhhhcCCcEEEEECCcchHHHHhhc------------------
Confidence 4455566666678888888887655443321
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
.+++|+|+||+++.+.+... ...+.+++++|+||+|++.+.++...+..++.....
T Consensus 104 ----~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~------------------- 159 (337)
T 2z0m_A 104 ----RNADIVVATPGRLLDLWSKG-VIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSN------------------- 159 (337)
T ss_dssp ----TTCSEEEECHHHHHHHHHTT-SCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTT-------------------
T ss_pred ----CCCCEEEECHHHHHHHHHcC-CcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCc-------------------
Confidence 24689999999999887763 356788999999999999877777667766655432
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHH
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 320 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (475)
..+.+++|||+++.........+..+........ ...+........ .........
T Consensus 160 -------------------~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~ 214 (337)
T 2z0m_A 160 -------------------RKITGLFSATIPEEIRKVVKDFITNYEEIEACIG----LANVEHKFVHVK--DDWRSKVQA 214 (337)
T ss_dssp -------------------CSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGG----GGGEEEEEEECS--SSSHHHHHH
T ss_pred -------------------ccEEEEEeCcCCHHHHHHHHHhcCCceeeecccc----cCCceEEEEEeC--hHHHHHHHH
Confidence 2256788999987766655555544433322111 111111111111 222233455
Q ss_pred HHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcE
Q 011884 321 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 400 (475)
Q Consensus 321 l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~ 400 (475)
+....++++||||++++.++.+++.|. ++..+||+++..+|.++++.|++|+.++||+|+++++|+|+|++++
T Consensus 215 ~~~~~~~~~lvf~~~~~~~~~l~~~l~-------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~ 287 (337)
T 2z0m_A 215 LRENKDKGVIVFVRTRNRVAKLVRLFD-------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEK 287 (337)
T ss_dssp HHTCCCSSEEEECSCHHHHHHHHTTCT-------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSE
T ss_pred HHhCCCCcEEEEEcCHHHHHHHHHHhh-------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCE
Confidence 666778899999999999999988876 4678999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhc
Q 011884 401 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 449 (475)
Q Consensus 401 Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~ 449 (475)
||+++.|.|+..|.||+||+||.|+.|.+++++. .+...++++.+.++
T Consensus 288 Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 288 VINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp EEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred EEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999 88888888776654
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.4e-46 Score=385.89 Aligned_cols=342 Identities=23% Similarity=0.365 Sum_probs=137.5
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||..|+|+|.+|+..++.. .+++++++||||||||++|+++++..+... ..++++||++||++|+.|+++.+
T Consensus 110 ~g~~~p~~~Q~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-~~~~~~lil~Pt~~La~Q~~~~~---- 182 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-NKYPQCLCLSPTYELALQTGKVI---- 182 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHTTCCTT-SCSCCEEEECSSHHHHHHHHHHH----
T ss_pred cCCCCCCHHHHHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHHHHhhc-CCCCcEEEEeChHHHHHHHHHHH----
Confidence 68999999999998877662 248999999999999999999998877654 34558999999999999965543
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhccc-ccceEeEccCCCchHHHHHHHhhccccccCccCCchhH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPA-VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 159 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
..+... .++.+....++......
T Consensus 183 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 206 (479)
T 3fmp_B 183 -----------------------------------EQMGKFYPELKLAYAVRGNKLERG--------------------- 206 (479)
T ss_dssp -----------------------------------HHHHTTSTTCCEEEESTTCCCCTT---------------------
T ss_pred -----------------------------------HHHHhhCCCceEEEEeCCcccccc---------------------
Confidence 333332 24555556655432111
Q ss_pred HHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHH-HHHHhhHHHHHHhcccccccccccccccccccc
Q 011884 160 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238 (475)
Q Consensus 160 ~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~-~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
....++|+|+||+.+.+++.+...+.+.++++||+||+|++.+ .++...+..+...+..
T Consensus 207 ---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~----------------- 266 (479)
T 3fmp_B 207 ---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR----------------- 266 (479)
T ss_dssp ---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCT-----------------
T ss_pred ---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCc-----------------
Confidence 1124689999999999999776667788999999999999875 4455455555443321
Q ss_pred ccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhc-cCCCcHHHH
Q 011884 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYL 317 (475)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 317 (475)
..+.+++|||++.....+....+..+..+......... ..+.+..... ....+...+
T Consensus 267 ---------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 324 (479)
T 3fmp_B 267 ---------------------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETL-DTIKQYYVLCSSRDEKFQAL 324 (479)
T ss_dssp ---------------------TSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------------
T ss_pred ---------------------cceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCc-CCceEEEEEeCCHHHHHHHH
Confidence 33789999999987777777777777666554433322 2333333333 335677777
Q ss_pred HHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCC
Q 011884 318 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 397 (475)
Q Consensus 318 ~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~ 397 (475)
..++.....+++||||+++..++.+++.|...+ ..+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|+
T Consensus 325 ~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~---~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~ 401 (479)
T 3fmp_B 325 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEG---HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhccCCceEEEeCcHHHHHHHHHHHHhCC---ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCcccc
Confidence 777777777899999999999999999999765 88999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCC------CCHHHHHHHhhhccccCCCCcEEEEeechh-HHHHHHHHHHhcC
Q 011884 398 VNNVVNYDKP------AYIKTYIHRAGRTARAGQLGRCFTLLHKDE-VKRFKKLLQKADN 450 (475)
Q Consensus 398 ~~~Vv~~~~~------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~-~~~~~~l~~~~~~ 450 (475)
+++||++++| .+...|+||+||+||.|+.|.++++++..+ ...++.+.+.+..
T Consensus 402 v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~ 461 (479)
T 3fmp_B 402 VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNK 461 (479)
T ss_dssp ------------------------------------------------------------
T ss_pred CCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCC
Confidence 9999999999 466899999999999999999999997654 6666666665543
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7e-45 Score=374.92 Aligned_cols=340 Identities=22% Similarity=0.337 Sum_probs=232.5
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||..|+++|.+|+..++.. .+++++++||||||||++|+++++..+... ..++++||++|+++|+.|++++
T Consensus 137 ~g~~~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~-~~~~~vLvl~P~~~L~~Q~~~~----- 208 (508)
T 3fho_A 137 XXXXXXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDAS-VPKPQAICLAPSRELARQIMDV----- 208 (508)
T ss_dssp --CEECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTT-CCSCCEEEECSCHHHHHHHHHH-----
T ss_pred ccccCcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhC-CCCceEEEEECcHHHHHHHHHH-----
Confidence 36778999999999887763 248999999999999999999999887654 3456899999999999995544
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
+..+....+..+....++....
T Consensus 209 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~------------------------ 230 (508)
T 3fho_A 209 ----------------------------------VTEMGKYTEVKTAFGIKDSVPK------------------------ 230 (508)
T ss_dssp ----------------------------------HHHHSTTSSCCEEC--------------------------------
T ss_pred ----------------------------------HHHhCCccCeeEEEEeCCcccc------------------------
Confidence 4444444445554444432211
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHH-HHHHhhHHHHHHhccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 239 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~-~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 239 (475)
....+++|+|+||+++++.+.... ..+.++++||+||+|++.+ .++...+..+......
T Consensus 231 -~~~~~~~Ivv~T~~~l~~~l~~~~-~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~------------------ 290 (508)
T 3fho_A 231 -GAKIDAQIVIGTPGTVMDLMKRRQ-LDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPR------------------ 290 (508)
T ss_dssp ---CCCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCT------------------
T ss_pred -cccCCCCEEEECHHHHHHHHHcCC-ccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCc------------------
Confidence 112257999999999999887633 6678999999999999865 4555555556554432
Q ss_pred cchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhh-hccCCCcHHHHH
Q 011884 240 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL-ICESKLKPLYLV 318 (475)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 318 (475)
..+.+++|||+++....+.......+............ ..+..... ......+...+.
T Consensus 291 --------------------~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~k~~~l~ 349 (508)
T 3fho_A 291 --------------------NTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSV-EGIKQLYMDCQSEEHKYNVLV 349 (508)
T ss_dssp --------------------TCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC--CHHHHHHHH
T ss_pred --------------------CCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCc-ccceEEEEECCchHHHHHHHH
Confidence 23679999999877777666666655544333222221 11122221 223344566777
Q ss_pred HHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCC
Q 011884 319 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 398 (475)
Q Consensus 319 ~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~ 398 (475)
.++....++++||||+++..++.+++.|.+.+ ..+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++
T Consensus 350 ~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~---~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v 426 (508)
T 3fho_A 350 ELYGLLTIGQSIIFCKKKDTAEEIARRMTADG---HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQV 426 (508)
T ss_dssp HHHC---CCCEEEBCSSTTTTTHHHHHHTTTT---CCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTC
T ss_pred HHHHhcCCCcEEEEECCHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCC
Confidence 77777778899999999999999999998765 889999999999999999999999999999999999999999999
Q ss_pred cEEEEecCC------CCHHHHHHHhhhccccCCCCcEEEEee-chhHHHHHHHHHHhcC
Q 011884 399 NNVVNYDKP------AYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRFKKLLQKADN 450 (475)
Q Consensus 399 ~~Vv~~~~~------~s~~~~~Q~~GR~~R~~~~g~~~~~~~-~~~~~~~~~l~~~~~~ 450 (475)
++||+++.| .|+..|.||+||+||.|+.|.+++++. .++...++.+.+....
T Consensus 427 ~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~ 485 (508)
T 3fho_A 427 NLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQR 485 (508)
T ss_dssp CEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCC
T ss_pred CEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCC
Confidence 999999999 789999999999999999999999987 4566667777666653
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.2e-43 Score=362.70 Aligned_cols=327 Identities=20% Similarity=0.295 Sum_probs=245.9
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
|||.+|+|+|.+++..++. ++++++.||||+|||++|++|++. ..+++||++|+++|+.|++++++++
T Consensus 21 ~g~~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l~-------~~g~~lvi~P~~aL~~q~~~~l~~~- 88 (523)
T 1oyw_A 21 FGYQQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALL-------LNGLTVVVSPLISLMKDQVDQLQAN- 88 (523)
T ss_dssp TCCSSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHH-------SSSEEEEECSCHHHHHHHHHHHHHT-
T ss_pred hCCCCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHHH-------hCCCEEEECChHHHHHHHHHHHHHc-
Confidence 7999999999999887765 789999999999999999998874 1347999999999999965553322
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
++.+..++|+.........+.
T Consensus 89 ------------------------------------------gi~~~~l~~~~~~~~~~~~~~----------------- 109 (523)
T 1oyw_A 89 ------------------------------------------GVAAACLNSTQTREQQLEVMT----------------- 109 (523)
T ss_dssp ------------------------------------------TCCEEEECTTSCHHHHHHHHH-----------------
T ss_pred ------------------------------------------CCcEEEEeCCCCHHHHHHHHH-----------------
Confidence 567777777765443322111
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHH--HHhhHH---HHHHhccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA--YQAWLP---TVLQLTRSDNENRFSDASTFLP 235 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~--~~~~i~---~i~~~~~~~~~~~~~~~~~~~~ 235 (475)
......++|+++||+++...... ..+...+++++|+||||++.+.+ +..... .+...
T Consensus 110 ~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~----------------- 171 (523)
T 1oyw_A 110 GCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR----------------- 171 (523)
T ss_dssp HHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH-----------------
T ss_pred HHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh-----------------
Confidence 11123479999999998532111 11234678999999999985432 111111 11111
Q ss_pred cccccchhhhccccccCCCCCCccchheeeeceeeccCccc--cccccccCceeeecCccccCCchhhhhhhhhccCCCc
Q 011884 236 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLK 313 (475)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (475)
++..+.+++|||+.+.... .....+..+.........+.+ .........+
T Consensus 172 ----------------------~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l------~~~v~~~~~~ 223 (523)
T 1oyw_A 172 ----------------------FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNI------RYMLMEKFKP 223 (523)
T ss_dssp ----------------------CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTE------EEEEEECSSH
T ss_pred ----------------------CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCce------EEEEEeCCCH
Confidence 1234679999999876433 222344555444332222111 1122233456
Q ss_pred HHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCC
Q 011884 314 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 393 (475)
Q Consensus 314 ~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~Gi 393 (475)
...+.+.+....++++||||+|+..++.+++.|++.+ +.+..+||+|+..+|.++++.|++|+.+|||||+++++||
T Consensus 224 ~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~Gi 300 (523)
T 1oyw_A 224 LDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKG---ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI 300 (523)
T ss_dssp HHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTT
T ss_pred HHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCC---CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCC
Confidence 7778888887788899999999999999999999876 8899999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHH
Q 011884 394 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 447 (475)
Q Consensus 394 Dip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~ 447 (475)
|+|++++||+++.|.|+..|.|++||+||.|++|.++++++..|...++.++..
T Consensus 301 D~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 301 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp CCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred CccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999888887765
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.4e-43 Score=367.28 Aligned_cols=331 Identities=18% Similarity=0.248 Sum_probs=241.1
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
|||.+|+|+|.+++..++. ++++++.+|||+|||++|++|++. ..+++||++|+++|+.|+++.+
T Consensus 40 fg~~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~-------~~g~~lVisP~~~L~~q~~~~l---- 104 (591)
T 2v1x_A 40 FKLEKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC-------SDGFTLVICPLISLMEDQLMVL---- 104 (591)
T ss_dssp SCCCSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT-------SSSEEEEECSCHHHHHHHHHHH----
T ss_pred hCCCCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH-------cCCcEEEEeCHHHHHHHHHHHH----
Confidence 6999999999999887765 899999999999999999999874 2347999999999999965543
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
..+ ++.+..++|+.........+.. .
T Consensus 105 -----------------------------------~~~----gi~~~~l~~~~~~~~~~~~~~~---------------l 130 (591)
T 2v1x_A 105 -----------------------------------KQL----GISATMLNASSSKEHVKWVHAE---------------M 130 (591)
T ss_dssp -----------------------------------HHH----TCCEEECCSSCCHHHHHHHHHH---------------H
T ss_pred -----------------------------------Hhc----CCcEEEEeCCCCHHHHHHHHHH---------------h
Confidence 332 6778888888765444221110 0
Q ss_pred HhhhcCCcEEEeCchHHH------HHhhcCCCcccCCccEEEEcchHHHHHHH--HHhhHHHHHHhcccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLM------DHINATRGFTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDAST 232 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~------~~l~~~~~~~~~~~~~lVvDE~H~l~~~~--~~~~i~~i~~~~~~~~~~~~~~~~~ 232 (475)
......++|+|+||+++. +.+.. ...+..++++||||||++..++ +...+..+-.
T Consensus 131 ~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~--------------- 193 (591)
T 2v1x_A 131 VNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGI--------------- 193 (591)
T ss_dssp HCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGH---------------
T ss_pred hcccCCCCEEEEChhHhhccHHHHHHHHh--hhhccCCcEEEEECcccccccccccHHHHHHHHH---------------
Confidence 001345799999999874 22222 2346789999999999885432 2221111000
Q ss_pred ccccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccc--cccCceeeecCccccCCchhhhhhhhhccC
Q 011884 233 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL--DLHHPLFLTTGETRYKLPERLESYKLICES 310 (475)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (475)
+. ..++..+.+++|||+++........ .+..+..+......+.+ .... ....
T Consensus 194 -----------l~----------~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl----~~~v-~~~~ 247 (591)
T 2v1x_A 194 -----------LK----------RQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNL----YYEV-RQKP 247 (591)
T ss_dssp -----------HH----------HHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTE----EEEE-EECC
T ss_pred -----------HH----------HhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCccc----EEEE-EeCC
Confidence 00 0012347899999998765443322 22333333322222111 1111 1111
Q ss_pred C---CcHHHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEc
Q 011884 311 K---LKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 386 (475)
Q Consensus 311 ~---~~~~~l~~~l~~-~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t 386 (475)
. .+...+.+.+.. ..++++||||+|+..++.+++.|...+ +.+..+||+|+..+|.++++.|++|+.+|||+|
T Consensus 248 ~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g---~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT 324 (591)
T 2v1x_A 248 SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLG---IHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 324 (591)
T ss_dssp SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEEC
T ss_pred CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCC---CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 1 233455555543 367899999999999999999999876 899999999999999999999999999999999
Q ss_pred CCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHH
Q 011884 387 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 446 (475)
Q Consensus 387 ~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~ 446 (475)
+++++|||+|++++||++++|.|+..|.|++||+||.|+.|.|++++...|...++.++.
T Consensus 325 ~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~ 384 (591)
T 2v1x_A 325 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVV 384 (591)
T ss_dssp TTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTT
T ss_pred chhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999888877764
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6.2e-42 Score=344.93 Aligned_cols=332 Identities=19% Similarity=0.266 Sum_probs=234.2
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+|| +|+|+|.+++..++. +++++++||||||||++++++++..+. .++++||++||++|+.|+
T Consensus 18 ~~~-~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~~----~~~~~lil~Pt~~L~~q~-------- 80 (414)
T 3oiy_A 18 FGK-DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQT-------- 80 (414)
T ss_dssp HSS-CCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHH--------
T ss_pred cCC-CCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHhc----CCCEEEEEECCHHHHHHH--------
Confidence 366 799999999887654 789999999999999988888776552 456899999999999995
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.+.+..+.. .++++..++|+.+..+.... .
T Consensus 81 -------------------------------~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~------------------~ 110 (414)
T 3oiy_A 81 -------------------------------LERLQKLAD-EKVKIFGFYSSMKKEEKEKF------------------E 110 (414)
T ss_dssp -------------------------------HHHHHHHCC-SSCCEEECCTTSCHHHHHHH------------------H
T ss_pred -------------------------------HHHHHHHcc-CCceEEEEECCCChhhHHHH------------------H
Confidence 444555555 68899999999876333211 1
Q ss_pred HhhhcC-CcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHH-----------HHhh-HHHHHHhccccccccc
Q 011884 161 QELQSA-VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA-----------YQAW-LPTVLQLTRSDNENRF 227 (475)
Q Consensus 161 ~~~~~~-~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~-----------~~~~-i~~i~~~~~~~~~~~~ 227 (475)
..+..+ ++|+|+||+.+.+++.. ..+.++++||+||||++...+ +... +..++..++....
T Consensus 111 ~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~--- 184 (414)
T 3oiy_A 111 KSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI--- 184 (414)
T ss_dssp HHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC---
T ss_pred HHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchh---
Confidence 123333 79999999999887764 556789999999999886422 2222 4444444321000
Q ss_pred cccccccccccccchhhhccccccCCCCCCccchheeeeceee-ccCcccc-ccccccCceeeecCccccCCchhhhhhh
Q 011884 228 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL-TQDPNKL-AQLDLHHPLFLTTGETRYKLPERLESYK 305 (475)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (475)
.......+..+.+++|||+ +...... ....+. +.... .......+.+..
T Consensus 185 ------------------------~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~i~~~~ 235 (414)
T 3oiy_A 185 ------------------------YERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR-LVSVARNITHVR 235 (414)
T ss_dssp ------------------------CCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSC-CCCCCCSEEEEE
T ss_pred ------------------------hhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCc-cccccccchhee
Confidence 0000001244789999994 4333321 111111 11111 111112222222
Q ss_pred hhccCCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeE-EeccccCHHHHHHHHHHHHcCCeEEEE
Q 011884 306 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK-EYSGLQRQSVRSKTLKAFREGKIQVLV 384 (475)
Q Consensus 306 ~~~~~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~-~~~g~~~~~~r~~~~~~f~~g~~~iLv 384 (475)
. ...+...+.+++... ++++||||+++..++.+++.|++.+ +.+. .+||. +|+ ++.|++|+.+|||
T Consensus 236 ~---~~~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~h~~----~r~--~~~f~~g~~~vLv 302 (414)
T 3oiy_A 236 I---SSRSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFK---FNVGETWSEF----EKN--FEDFKVGKINILI 302 (414)
T ss_dssp E---SSCCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTT---CCEEESSSCH----HHH--HHHHHTTSCSEEE
T ss_pred e---ccCHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcC---CceehhhcCc----chH--HHHHhCCCCeEEE
Confidence 1 224667777777774 5899999999999999999999876 7887 88984 444 9999999999999
Q ss_pred E----cCCcccCCCCCC-CcEEEEecCC--CCHHHHHHHhhhccccC----CCCcEEEEeechhHHHHHHHHHHhc
Q 011884 385 S----SDAMTRGMDVEG-VNNVVNYDKP--AYIKTYIHRAGRTARAG----QLGRCFTLLHKDEVKRFKKLLQKAD 449 (475)
Q Consensus 385 ~----t~~~~~GiDip~-~~~Vv~~~~~--~s~~~~~Q~~GR~~R~~----~~g~~~~~~~~~~~~~~~~l~~~~~ 449 (475)
| |+++++|+|+|+ +++||+++.| .++..|+||+||+||.| +.|.+++++ .+...++.+.+.+.
T Consensus 303 at~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 303 GVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9 999999999999 9999999999 99999999999999987 467888887 45555555555544
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1e-39 Score=341.15 Aligned_cols=338 Identities=18% Similarity=0.201 Sum_probs=187.9
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhc-cccceEEEcccHHHHHHHhhhhhcc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~-~~~~vlil~Pt~~L~~q~~~~~~~~ 79 (475)
|+..+|+|+|.+++..++. ++++++++|||+|||++++++++..+..... .+.++||++||++|+.||++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~----- 73 (556)
T 4a2p_A 3 METKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKN----- 73 (556)
T ss_dssp -----CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHH-----
T ss_pred CCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHH-----
Confidence 3456899999999887754 7899999999999999999999888766421 15689999999999999544
Q ss_pred cccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhH
Q 011884 80 CCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 159 (475)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
.+..+....++++..++|+.........
T Consensus 74 ----------------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------------ 101 (556)
T 4a2p_A 74 ----------------------------------VFKHHFERQGYSVQGISGENFSNVSVEK------------------ 101 (556)
T ss_dssp ----------------------------------HHHHHHGGGTCCEEECCCC-----CHHH------------------
T ss_pred ----------------------------------HHHHHhcccCceEEEEeCCCCcchhHHH------------------
Confidence 4555555558889999998754443322
Q ss_pred HHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhh-HHHHHHhcccccccccccccccccccc
Q 011884 160 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAF 238 (475)
Q Consensus 160 ~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~-i~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
+..+++|+|+||+++.+.+.......+.++++||+||||++.+.+.... +..++......
T Consensus 102 ---~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~---------------- 162 (556)
T 4a2p_A 102 ---VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS---------------- 162 (556)
T ss_dssp ---HHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC----------------
T ss_pred ---hhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcc----------------
Confidence 2234699999999999998875433688999999999999864432222 21222111000
Q ss_pred ccchhhhccccccCCCCCCccchheeeeceeeccCcc-ccc----------c------------------ccccCceeee
Q 011884 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN-KLA----------Q------------------LDLHHPLFLT 289 (475)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~-~~~----------~------------------~~~~~~~~~~ 289 (475)
..+..+.+++|||+..... .+. . .....+....
T Consensus 163 ------------------~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (556)
T 4a2p_A 163 ------------------ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDV 224 (556)
T ss_dssp ---------------------CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEE
T ss_pred ------------------cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEE
Confidence 0122367888999853210 000 0 0000000000
Q ss_pred cCccccCCchhhh-------------------------------------hhh---------------------------
Q 011884 290 TGETRYKLPERLE-------------------------------------SYK--------------------------- 305 (475)
Q Consensus 290 ~~~~~~~~~~~~~-------------------------------------~~~--------------------------- 305 (475)
..... ..+.... ...
T Consensus 225 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (556)
T 4a2p_A 225 RLVKR-RIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFI 303 (556)
T ss_dssp EECCC-CSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHH
T ss_pred EEcCC-CcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 00000 0000000 000
Q ss_pred --------------------------------------------------------------hhccCCCcHHHHHHHHHh
Q 011884 306 --------------------------------------------------------------LICESKLKPLYLVALLQS 323 (475)
Q Consensus 306 --------------------------------------------------------------~~~~~~~~~~~l~~~l~~ 323 (475)
.......|...+.+++..
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~ 383 (556)
T 4a2p_A 304 CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDD 383 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHH
Confidence 000013355666666654
Q ss_pred ----cCCCeEEEEcCChHHHHHHHHHHhhcCC---------CceeeEEeccccCHHHHHHHHHHHHc-CCeEEEEEcCCc
Q 011884 324 ----LGEEKCIVFTSSVESTHRLCTLLNHFGE---------LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAM 389 (475)
Q Consensus 324 ----~~~~~~lvf~~s~~~~~~l~~~l~~~~~---------~~~~~~~~~g~~~~~~r~~~~~~f~~-g~~~iLv~t~~~ 389 (475)
..++++||||+++..++.+++.|.+... .+.....+||+|+..+|.+++++|++ |+.+|||||+++
T Consensus 384 ~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~ 463 (556)
T 4a2p_A 384 AYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVA 463 (556)
T ss_dssp HHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC--
T ss_pred HhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCch
Confidence 4678999999999999999999987511 13445566888999999999999999 999999999999
Q ss_pred ccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHH
Q 011884 390 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 439 (475)
Q Consensus 390 ~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 439 (475)
++|+|+|++++||++++|+|+..|+||+|| ||. +.|.+++++...+..
T Consensus 464 ~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 464 DEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp ---------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred hcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999999999999999999999 998 589999999886653
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=8.2e-40 Score=351.26 Aligned_cols=325 Identities=20% Similarity=0.250 Sum_probs=236.1
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+|+|.+++..+ +.++++++++||||||||+++.++++..+... +.+++|++|+++|+.|+++++++
T Consensus 19 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~~l~i~P~raLa~q~~~~~~~-- 90 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ---GGKAVYIVPLKALAEEKFQEFQD-- 90 (720)
T ss_dssp TTCCBCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH---CSEEEEECSSGGGHHHHHHHTGG--
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CCEEEEEcCcHHHHHHHHHHHHH--
Confidence 58999999999987652 34589999999999999999999998877643 45899999999999997665432
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
+.. .++++...+|+......
T Consensus 91 -------------------------------------l~~-~g~~v~~~~G~~~~~~~---------------------- 110 (720)
T 2zj8_A 91 -------------------------------------WEK-IGLRVAMATGDYDSKDE---------------------- 110 (720)
T ss_dssp -------------------------------------GGG-GTCCEEEECSCSSCCCG----------------------
T ss_pred -------------------------------------HHh-cCCEEEEecCCCCcccc----------------------
Confidence 222 36788888887543222
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
...+++|+|+||+++...+.... ..++++++||+||+|.+.+..++..++.++.++..
T Consensus 111 --~~~~~~Iiv~Tpe~l~~~~~~~~-~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~------------------- 168 (720)
T 2zj8_A 111 --WLGKYDIIIATAEKFDSLLRHGS-SWIKDVKILVADEIHLIGSRDRGATLEVILAHMLG------------------- 168 (720)
T ss_dssp --GGGGCSEEEECHHHHHHHHHHTC-TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT-------------------
T ss_pred --ccCCCCEEEECHHHHHHHHHcCh-hhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhc-------------------
Confidence 11256999999999988887633 44788999999999998766777778888877642
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhh--hhhhhhc-----cCCCc
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL--ESYKLIC-----ESKLK 313 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~ 313 (475)
..+.+++|||+++ ...+.... .... +............. ....... .....
T Consensus 169 -------------------~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T 2zj8_A 169 -------------------KAQIIGLSATIGN-PEELAEWL-NAEL-IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSW 226 (720)
T ss_dssp -------------------TBEEEEEECCCSC-HHHHHHHT-TEEE-EECCCCSSEEEEEEEETTEEEETTSCEEECSST
T ss_pred -------------------CCeEEEEcCCcCC-HHHHHHHh-CCcc-cCCCCCCCcceEEEEeCCeeeccccchhhhhHH
Confidence 2378999999964 33333221 1111 10000000000000 0000000 02334
Q ss_pred HHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCC------------------------------ceeeEEecccc
Q 011884 314 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL------------------------------RIKIKEYSGLQ 363 (475)
Q Consensus 314 ~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~------------------------------~~~~~~~~g~~ 363 (475)
...+.+.+. .++++||||+++..++.+++.|.+.... ..++..+||+|
T Consensus 227 ~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l 304 (720)
T 2zj8_A 227 EELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGL 304 (720)
T ss_dssp THHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTS
T ss_pred HHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCC
Confidence 455555544 4689999999999999999998764210 12489999999
Q ss_pred CHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEE----ec----CCCCHHHHHHHhhhccccCC--CCcEEEEe
Q 011884 364 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD----KPAYIKTYIHRAGRTARAGQ--LGRCFTLL 433 (475)
Q Consensus 364 ~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~----~~----~~~s~~~~~Q~~GR~~R~~~--~g~~~~~~ 433 (475)
+..+|..+++.|++|+.+|||||+++++|||+|++++||. ++ .|.|...|.||+||+||.|. .|.|++++
T Consensus 305 ~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 384 (720)
T 2zj8_A 305 GRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVS 384 (720)
T ss_dssp CHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEEC
T ss_pred CHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEe
Confidence 9999999999999999999999999999999999999887 54 57899999999999999884 57888888
Q ss_pred echhHH
Q 011884 434 HKDEVK 439 (475)
Q Consensus 434 ~~~~~~ 439 (475)
...+..
T Consensus 385 ~~~~~~ 390 (720)
T 2zj8_A 385 TSDDPR 390 (720)
T ss_dssp SSSCHH
T ss_pred cCccHH
Confidence 877643
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1e-39 Score=350.13 Aligned_cols=341 Identities=18% Similarity=0.170 Sum_probs=201.4
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhc-cccceEEEcccHHHHHHHhhhhhcc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~-~~~~vlil~Pt~~L~~q~~~~~~~~ 79 (475)
|||.+|+++|.+++..++. ++++++++|||+|||++++++++..+..... .+.++||++||++|+.|+++
T Consensus 9 ~g~~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~----- 79 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKS----- 79 (696)
T ss_dssp TC--CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHH-----
T ss_pred cCCCCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHH-----
Confidence 6899999999999887654 8899999999999999999999887765421 22589999999999999544
Q ss_pred cccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhH
Q 011884 80 CCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 159 (475)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
.+..+....++++..++|+........
T Consensus 80 ----------------------------------~~~~~~~~~~~~v~~~~g~~~~~~~~~------------------- 106 (696)
T 2ykg_A 80 ----------------------------------VFSKYFERHGYRVTGISGATAENVPVE------------------- 106 (696)
T ss_dssp ----------------------------------HHHHHTTTTTCCEEEECSSSCSSSCHH-------------------
T ss_pred ----------------------------------HHHHHhccCCceEEEEeCCccccccHH-------------------
Confidence 455555556788999998875433222
Q ss_pred HHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHH-HHhhHHHHHHh-ccccccccccccccccccc
Q 011884 160 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA-YQAWLPTVLQL-TRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 160 ~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~-~~~~i~~i~~~-~~~~~~~~~~~~~~~~~~~ 237 (475)
.+..+++|+|+||++|.+.+.......+.++++||+||||++.... +...+...+.. +...
T Consensus 107 --~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~--------------- 169 (696)
T 2ykg_A 107 --QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS--------------- 169 (696)
T ss_dssp --HHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTC---------------
T ss_pred --HhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhccc---------------
Confidence 2233579999999999999887543367889999999999964321 11122112211 1000
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccC--------------------------------------------
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD-------------------------------------------- 273 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~-------------------------------------------- 273 (475)
..+..+.+++|||+...
T Consensus 170 -------------------~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~ 230 (696)
T 2ykg_A 170 -------------------SGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKF 230 (696)
T ss_dssp -------------------CSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEE
T ss_pred -------------------CCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCcee
Confidence 00122455666665411
Q ss_pred ----------------------ccccccccccCceeeecCccccC-----------------------------------
Q 011884 274 ----------------------PNKLAQLDLHHPLFLTTGETRYK----------------------------------- 296 (475)
Q Consensus 274 ----------------------~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 296 (475)
...+....+.++...........
T Consensus 231 ~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 310 (696)
T 2ykg_A 231 FRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF 310 (696)
T ss_dssp EEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHH
T ss_pred EEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHH
Confidence 11111111110000000000000
Q ss_pred --------------------------------------Cchhhhhhhhh-------------c---cCCCcHHHHHHHHH
Q 011884 297 --------------------------------------LPERLESYKLI-------------C---ESKLKPLYLVALLQ 322 (475)
Q Consensus 297 --------------------------------------~~~~~~~~~~~-------------~---~~~~~~~~l~~~l~ 322 (475)
....+.+.... . ....+...+.+++.
T Consensus 311 ~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~ 390 (696)
T 2ykg_A 311 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 390 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 00000000000 0 13446777777777
Q ss_pred hc----CCCeEEEEcCChHHHHHHHHHHhhcCC-CceeeEEe--------ccccCHHHHHHHHHHHHc-CCeEEEEEcCC
Q 011884 323 SL----GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEY--------SGLQRQSVRSKTLKAFRE-GKIQVLVSSDA 388 (475)
Q Consensus 323 ~~----~~~~~lvf~~s~~~~~~l~~~l~~~~~-~~~~~~~~--------~g~~~~~~r~~~~~~f~~-g~~~iLv~t~~ 388 (475)
.. +++++||||+++..++.+++.|++.+. ..+.+..+ ||+|+..+|.+++++|++ |+.+|||||++
T Consensus 391 ~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v 470 (696)
T 2ykg_A 391 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV 470 (696)
T ss_dssp HHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEES
T ss_pred HHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEech
Confidence 65 678999999999999999999998642 12456666 669999999999999998 99999999999
Q ss_pred cccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHH
Q 011884 389 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 441 (475)
Q Consensus 389 ~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~ 441 (475)
+++|+|+|++++||++++|.|+..|+||+|| ||. +.|.+++++...+....
T Consensus 471 ~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 471 ADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp SCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHH
T ss_pred hhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHH
Confidence 9999999999999999999999999999999 998 58999999988776443
No 22
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-39 Score=354.12 Aligned_cols=341 Identities=18% Similarity=0.172 Sum_probs=238.2
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
.|+|+|.+|+..+ .++++++++||||||||++|.++++..+.. +.+++|++||++|+.|+++.+.+
T Consensus 184 ~ltp~Q~~AI~~i----~~g~dvLV~ApTGSGKTlva~l~i~~~l~~----g~rvlvl~PtraLa~Q~~~~l~~------ 249 (1108)
T 3l9o_A 184 TLDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALSNQKYRELLA------ 249 (1108)
T ss_dssp CCCHHHHHHHHHH----TTTCCEEEECCSSSHHHHHHHHHHHHHHHT----TCEEEEEESSHHHHHHHHHHHHH------
T ss_pred CCCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHHhc----CCeEEEEcCcHHHHHHHHHHHHH------
Confidence 7999999998765 458999999999999999999999887743 45899999999999996655433
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
... .++.++|+... .
T Consensus 250 ---------------------------------~~~----~VglltGd~~~----------------------------~ 264 (1108)
T 3l9o_A 250 ---------------------------------EFG----DVGLMTGDITI----------------------------N 264 (1108)
T ss_dssp ---------------------------------HTS----SEEEECSSCBC----------------------------C
T ss_pred ---------------------------------HhC----CccEEeCcccc----------------------------C
Confidence 222 46667776541 1
Q ss_pred cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhh
Q 011884 165 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 244 (475)
Q Consensus 165 ~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (475)
.+++|+|+||++|.+.+.... ..+.++++|||||||++.+.+++..++.++..+..
T Consensus 265 ~~~~IlV~Tpe~L~~~L~~~~-~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~----------------------- 320 (1108)
T 3l9o_A 265 PDAGCLVMTTEILRSMLYRGS-EVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD----------------------- 320 (1108)
T ss_dssp CSCSEEEEEHHHHHHHHHHCS-SHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCT-----------------------
T ss_pred CCCCEEEeChHHHHHHHHcCc-cccccCCEEEEhhhhhccccchHHHHHHHHHhcCC-----------------------
Confidence 246899999999999887644 45778999999999999888888888888876543
Q ss_pred hccccccCCCCCCccchheeeeceeeccCcc--ccccccccCceeeecCccccCC-------------c-----------
Q 011884 245 RRCGVERGFKDKPYPRLVKMVLSATLTQDPN--KLAQLDLHHPLFLTTGETRYKL-------------P----------- 298 (475)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------------~----------- 298 (475)
..+.+++|||+++... .+.......+..+......+.. .
T Consensus 321 ---------------~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~ 385 (1108)
T 3l9o_A 321 ---------------KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFRE 385 (1108)
T ss_dssp ---------------TSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECH
T ss_pred ---------------CceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhh
Confidence 3478999999865422 2222222221111110000000 0
Q ss_pred hhhhhhhhhc-------------------------cC---CCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcC
Q 011884 299 ERLESYKLIC-------------------------ES---KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 350 (475)
Q Consensus 299 ~~~~~~~~~~-------------------------~~---~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~ 350 (475)
.......... .. ..+...+...+.....+++||||+++..|+.++..|...+
T Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~ 465 (1108)
T 3l9o_A 386 ENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLD 465 (1108)
T ss_dssp HHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHH
T ss_pred hhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhcc
Confidence 0000000000 00 1122334444445567799999999999999999986532
Q ss_pred CC------------------------------------ceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCC
Q 011884 351 EL------------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 394 (475)
Q Consensus 351 ~~------------------------------------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiD 394 (475)
.. ...+..+||+|+..+|..+++.|++|..+|||||+++++|||
T Consensus 466 ~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GID 545 (1108)
T 3l9o_A 466 FNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLN 545 (1108)
T ss_dssp HHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCC
T ss_pred CCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCC
Confidence 10 012789999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecC--------CCCHHHHHHHhhhccccC--CCCcEEEEeech-hHHHHHHHHHHhcCCCCCccCCChhhh
Q 011884 395 VEGVNNVVNYDK--------PAYIKTYIHRAGRTARAG--QLGRCFTLLHKD-EVKRFKKLLQKADNDSCPIHSIPSSLI 463 (475)
Q Consensus 395 ip~~~~Vv~~~~--------~~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 463 (475)
+|++++||.++. |.|+.+|+||+||+||.| ..|.|+++++.. +...+++++........+.+.+.-+++
T Consensus 546 iP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~i 625 (1108)
T 3l9o_A 546 MPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMI 625 (1108)
T ss_dssp C--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_pred CCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHHH
Confidence 999999986543 348899999999999999 457777776554 566677777655544445555544433
No 23
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.6e-39 Score=345.50 Aligned_cols=322 Identities=21% Similarity=0.257 Sum_probs=228.9
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+|+|.+++..+ +.++++++++||||||||+++.++++..+... +.+++|++|+++|+.|+++++
T Consensus 26 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~il~i~P~r~La~q~~~~~---- 95 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN---GGKAIYVTPLRALTNEKYLTF---- 95 (715)
T ss_dssp TSCCBCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS---CSEEEEECSCHHHHHHHHHHH----
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC---CCeEEEEeCcHHHHHHHHHHH----
Confidence 58999999999997753 33589999999999999999999998877643 458999999999999965543
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
+.+.. .+.++...+|+.......
T Consensus 96 -----------------------------------~~~~~-~g~~v~~~~G~~~~~~~~--------------------- 118 (715)
T 2va8_A 96 -----------------------------------KDWEL-IGFKVAMTSGDYDTDDAW--------------------- 118 (715)
T ss_dssp -----------------------------------GGGGG-GTCCEEECCSCSSSCCGG---------------------
T ss_pred -----------------------------------HHhhc-CCCEEEEEeCCCCCchhh---------------------
Confidence 32222 367888888876533221
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
..+++|+|+||+++...+.... ..++++++||+||+|.+.+..++..++.++.++.
T Consensus 119 ---~~~~~Iiv~Tpe~l~~~~~~~~-~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-------------------- 174 (715)
T 2va8_A 119 ---LKNYDIIITTYEKLDSLWRHRP-EWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-------------------- 174 (715)
T ss_dssp ---GGGCSEEEECHHHHHHHHHHCC-GGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH--------------------
T ss_pred ---cCCCCEEEEcHHHHHHHHhCCh-hHhhccCEEEEechhhcCCcccchHHHHHHHhcc--------------------
Confidence 1256999999999998887633 4478999999999999865566777777776553
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhh----------hhhhhh---
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL----------ESYKLI--- 307 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~--- 307 (475)
..+.+++|||+++ ...+.... ..+.+ ........+...+ ...+..
T Consensus 175 -------------------~~~ii~lSATl~n-~~~~~~~l-~~~~~-~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~ 232 (715)
T 2va8_A 175 -------------------RRNLLALSATISN-YKQIAKWL-GAEPV-ATNWRPVPLIEGVIYPERKKKEYNVIFKDNTT 232 (715)
T ss_dssp -------------------TSEEEEEESCCTT-HHHHHHHH-TCEEE-ECCCCSSCEEEEEEEECSSTTEEEEEETTSCE
T ss_pred -------------------cCcEEEEcCCCCC-HHHHHHHh-CCCcc-CCCCCCCCceEEEEecCCcccceeeecCcchh
Confidence 1268999999964 23333221 11111 0000000000000 000000
Q ss_pred --cc-CCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCC--------------------------------
Q 011884 308 --CE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL-------------------------------- 352 (475)
Q Consensus 308 --~~-~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~-------------------------------- 352 (475)
.. .......+.+.+. .++++|||++++..++.+++.|.+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 233 KKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp EEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 00 1122333333332 5689999999999999999999864211
Q ss_pred -ceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEE----ec-------CCCCHHHHHHHhhhc
Q 011884 353 -RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD-------KPAYIKTYIHRAGRT 420 (475)
Q Consensus 353 -~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~----~~-------~~~s~~~~~Q~~GR~ 420 (475)
...+..+||+|+..+|..+++.|++|+.+|||||+++++|||+|++++||. ++ .|.|...|.||+||+
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 125889999999999999999999999999999999999999999999998 77 788999999999999
Q ss_pred cccCC--CCcEEEEeechh
Q 011884 421 ARAGQ--LGRCFTLLHKDE 437 (475)
Q Consensus 421 ~R~~~--~g~~~~~~~~~~ 437 (475)
||.|. .|.|++++...+
T Consensus 391 GR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 391 GRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp CCTTTCSCEEEEEECSCGG
T ss_pred CCCCCCCCceEEEEeCCch
Confidence 99884 678888887655
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.2e-39 Score=347.01 Aligned_cols=326 Identities=23% Similarity=0.280 Sum_probs=232.9
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+|+|.+++..+. ++++++++||||||||+++.++++..+.. +.+++|++|+++|+.|+++++
T Consensus 21 ~g~~~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~l~i~P~r~La~q~~~~~---- 88 (702)
T 2p6r_A 21 EGIEELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK----GGKSLYVVPLRALAGEKYESF---- 88 (702)
T ss_dssp C---CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHH----
T ss_pred CCCCCCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh----CCcEEEEeCcHHHHHHHHHHH----
Confidence 589999999999988744 48999999999999999999999887653 458999999999999965543
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
+.+.. .+.++...+|+......
T Consensus 89 -----------------------------------~~~~~-~g~~v~~~~G~~~~~~~---------------------- 110 (702)
T 2p6r_A 89 -----------------------------------KKWEK-IGLRIGISTGDYESRDE---------------------- 110 (702)
T ss_dssp -----------------------------------TTTTT-TTCCEEEECSSCBCCSS----------------------
T ss_pred -----------------------------------HHHHh-cCCEEEEEeCCCCcchh----------------------
Confidence 32222 36788888887643221
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
...+++|+|+||+++...+.+.. ..++++++||+||+|.+.+.+++..++.++..+....
T Consensus 111 --~~~~~~Iiv~Tpe~l~~~l~~~~-~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~----------------- 170 (702)
T 2p6r_A 111 --HLGDCDIIVTTSEKADSLIRNRA-SWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN----------------- 170 (702)
T ss_dssp --CSTTCSEEEEEHHHHHHHHHTTC-SGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHC-----------------
T ss_pred --hccCCCEEEECHHHHHHHHHcCh-hHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcC-----------------
Confidence 11257999999999998887633 4478999999999999876667777777776654210
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhh--hhhhhccC-------C
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE--SYKLICES-------K 311 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~ 311 (475)
+..+.+++|||+++ ...+.... ..+.+ .............. ........ .
T Consensus 171 ------------------~~~~ii~lSATl~n-~~~~~~~l-~~~~~-~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~ 229 (702)
T 2p6r_A 171 ------------------KALRVIGLSATAPN-VTEIAEWL-DADYY-VSDWRPVPLVEGVLCEGTLELFDGAFSTSRRV 229 (702)
T ss_dssp ------------------TTCEEEEEECCCTT-HHHHHHHT-TCEEE-ECCCCSSCEEEEEECSSEEEEEETTEEEEEEC
T ss_pred ------------------cCceEEEECCCcCC-HHHHHHHh-CCCcc-cCCCCCccceEEEeeCCeeeccCcchhhhhhh
Confidence 13478999999974 34433322 11111 11110000000000 00000000 0
Q ss_pred CcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCC---------------------------ceeeEEeccccC
Q 011884 312 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL---------------------------RIKIKEYSGLQR 364 (475)
Q Consensus 312 ~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~---------------------------~~~~~~~~g~~~ 364 (475)
.....+.+.+. .++++||||+++..++.+++.|.+.... ...+..+||+|+
T Consensus 230 ~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 307 (702)
T 2p6r_A 230 KFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLL 307 (702)
T ss_dssp CHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSC
T ss_pred hHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCC
Confidence 13344444443 4789999999999999999998764100 135889999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEE----ec---CCCCHHHHHHHhhhccccCC--CCcEEEEeec
Q 011884 365 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD---KPAYIKTYIHRAGRTARAGQ--LGRCFTLLHK 435 (475)
Q Consensus 365 ~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~----~~---~~~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~ 435 (475)
..+|..+++.|++|+.+|||||+++++|+|+|++++||. |+ .|.|...|.||+||+||.|. .|.|++++..
T Consensus 308 ~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 387 (702)
T 2p6r_A 308 NGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 387 (702)
T ss_dssp HHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCG
T ss_pred HHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecC
Confidence 999999999999999999999999999999999999887 54 68899999999999999884 6788888887
Q ss_pred hhHH
Q 011884 436 DEVK 439 (475)
Q Consensus 436 ~~~~ 439 (475)
.+..
T Consensus 388 ~~~~ 391 (702)
T 2p6r_A 388 RDRE 391 (702)
T ss_dssp GGHH
T ss_pred ccHH
Confidence 7743
No 25
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.2e-38 Score=323.58 Aligned_cols=323 Identities=24% Similarity=0.293 Sum_probs=227.4
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
.|+|+|.+++..++. + ++++.+|||+|||++++.++...+.. .+.++||++|+++|+.||++++
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~~---~~~~~liv~P~~~L~~q~~~~~-------- 72 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLTK---YGGKVLMLAPTKPLVLQHAESF-------- 72 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHHH---SCSCEEEECSSHHHHHHHHHHH--------
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHHHHH--------
Confidence 689999999887765 4 99999999999999999988877652 4568999999999999965554
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
..+......++..++|+........ ..
T Consensus 73 -------------------------------~~~~~~~~~~v~~~~g~~~~~~~~~----------------------~~ 99 (494)
T 1wp9_A 73 -------------------------------RRLFNLPPEKIVALTGEKSPEERSK----------------------AW 99 (494)
T ss_dssp -------------------------------HHHBCSCGGGEEEECSCSCHHHHHH----------------------HH
T ss_pred -------------------------------HHHhCcchhheEEeeCCcchhhhhh----------------------hc
Confidence 3333323457888888876544322 12
Q ss_pred cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhh
Q 011884 165 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 244 (475)
Q Consensus 165 ~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (475)
.+++|+|+||+.+.+.+... ...+.++++||+||||++.+......+...+.....
T Consensus 100 ~~~~ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~----------------------- 155 (494)
T 1wp9_A 100 ARAKVIVATPQTIENDLLAG-RISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAK----------------------- 155 (494)
T ss_dssp HHCSEEEECHHHHHHHHHTT-SCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCS-----------------------
T ss_pred cCCCEEEecHHHHHHHHhcC-CcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCC-----------------------
Confidence 24689999999999888763 356788999999999998543222222222222111
Q ss_pred hccccccCCCCCCccchheeeeceeeccCcccccc---c-cccCceeeecC--------------ccccCCchhh-----
Q 011884 245 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ---L-DLHHPLFLTTG--------------ETRYKLPERL----- 301 (475)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~---~-~~~~~~~~~~~--------------~~~~~~~~~~----- 301 (475)
..+.+++|||+..+...+.. . ....+...... ......+...
T Consensus 156 ---------------~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (494)
T 1wp9_A 156 ---------------NPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRK 220 (494)
T ss_dssp ---------------SCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHH
T ss_pred ---------------CCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHH
Confidence 12457777777633221110 0 00000000000 0000000000
Q ss_pred -----------------------------------------------------------------------------hhh
Q 011884 302 -----------------------------------------------------------------------------ESY 304 (475)
Q Consensus 302 -----------------------------------------------------------------------------~~~ 304 (475)
...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (494)
T 1wp9_A 221 LLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAY 300 (494)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Confidence 000
Q ss_pred -----------------------------------hhhccCCCcHHHHHHHHHh----cCCCeEEEEcCChHHHHHHHHH
Q 011884 305 -----------------------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTL 345 (475)
Q Consensus 305 -----------------------------------~~~~~~~~~~~~l~~~l~~----~~~~~~lvf~~s~~~~~~l~~~ 345 (475)
........|...+.+++.. ..++++||||+++..++.+++.
T Consensus 301 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~ 380 (494)
T 1wp9_A 301 IKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNE 380 (494)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHH
Confidence 0000233466667777766 4688999999999999999999
Q ss_pred HhhcCCCceeeEEecc--------ccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHh
Q 011884 346 LNHFGELRIKIKEYSG--------LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 417 (475)
Q Consensus 346 l~~~~~~~~~~~~~~g--------~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~ 417 (475)
|.+.+ +.+..+|| +|+..+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|+|+..|.||+
T Consensus 381 L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~ 457 (494)
T 1wp9_A 381 LVKDG---IKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRR 457 (494)
T ss_dssp HHHTT---CCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHH
T ss_pred HHHcC---CCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHH
Confidence 99875 88999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCcEEEEeechhHH
Q 011884 418 GRTARAGQLGRCFTLLHKDEVK 439 (475)
Q Consensus 418 GR~~R~~~~g~~~~~~~~~~~~ 439 (475)
||+||.|+ |.++.++..++.+
T Consensus 458 GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 458 GRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp TTSCSCCC-SEEEEEEETTSHH
T ss_pred hhccCCCC-ceEEEEEecCCHH
Confidence 99999996 9999999886554
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=6.4e-39 Score=334.87 Aligned_cols=338 Identities=18% Similarity=0.215 Sum_probs=213.8
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh-ccccceEEEcccHHHHHHHhhhhhcccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVNSARCKYCCKN 83 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~-~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 83 (475)
+|+|+|.+++..++. ++++++++|||+|||++++++++..+.... ..+.++||++||++|+.|+++
T Consensus 4 ~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~--------- 70 (555)
T 3tbk_A 4 KPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQAT--------- 70 (555)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHH---------
T ss_pred CCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHH---------
Confidence 799999999887754 789999999999999999999988877642 115689999999999999544
Q ss_pred cccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhh
Q 011884 84 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 163 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (475)
.+..+....++++..++|+......... +
T Consensus 71 ------------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~ 99 (555)
T 3tbk_A 71 ------------------------------VFSRYFERLGYNIASISGATSDSVSVQH---------------------I 99 (555)
T ss_dssp ------------------------------HHHHHHHTTTCCEEEECTTTGGGSCHHH---------------------H
T ss_pred ------------------------------HHHHHhccCCcEEEEEcCCCcchhhHHH---------------------H
Confidence 4555555557889999998765443322 2
Q ss_pred hcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHH-HHhhHHHHHHhccccccccccccccccccccccch
Q 011884 164 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 242 (475)
Q Consensus 164 ~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~-~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (475)
..+++|+|+||+++.+.+.......+.++++||+||||++.+.+ +...+...+.....
T Consensus 100 ~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~--------------------- 158 (555)
T 3tbk_A 100 IEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG--------------------- 158 (555)
T ss_dssp HHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS---------------------
T ss_pred hcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc---------------------
Confidence 23469999999999998887553367889999999999986442 22222222221100
Q ss_pred hhhccccccCCCCCCccchheeeeceeeccCc--------ccc---cc------------------ccccCceeeecCcc
Q 011884 243 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDP--------NKL---AQ------------------LDLHHPLFLTTGET 293 (475)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~--------~~~---~~------------------~~~~~~~~~~~~~~ 293 (475)
....+..+.+++|||+.... ..+ .. .....+........
T Consensus 159 ------------~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 226 (555)
T 3tbk_A 159 ------------ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVA 226 (555)
T ss_dssp ------------SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECC
T ss_pred ------------cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEec
Confidence 00012346788899985431 000 00 00000000000000
Q ss_pred ccCCchhhh-----------------------------------------------------------------------
Q 011884 294 RYKLPERLE----------------------------------------------------------------------- 302 (475)
Q Consensus 294 ~~~~~~~~~----------------------------------------------------------------------- 302 (475)
. ..+....
T Consensus 227 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (555)
T 3tbk_A 227 S-RTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTS 305 (555)
T ss_dssp C-CSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHH
T ss_pred C-cccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHH
Confidence 0 0000000
Q ss_pred -------------------------hh-------------------------------hhhccCCCcHHHHHHHHHh---
Q 011884 303 -------------------------SY-------------------------------KLICESKLKPLYLVALLQS--- 323 (475)
Q Consensus 303 -------------------------~~-------------------------------~~~~~~~~~~~~l~~~l~~--- 323 (475)
.+ ........|...+.+++..
T Consensus 306 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 385 (555)
T 3tbk_A 306 HLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYH 385 (555)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhc
Confidence 00 0000113455566666654
Q ss_pred -cCCCeEEEEcCChHHHHHHHHHHhhcCC---------CceeeEEeccccCHHHHHHHHHHHHc-CCeEEEEEcCCcccC
Q 011884 324 -LGEEKCIVFTSSVESTHRLCTLLNHFGE---------LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRG 392 (475)
Q Consensus 324 -~~~~~~lvf~~s~~~~~~l~~~l~~~~~---------~~~~~~~~~g~~~~~~r~~~~~~f~~-g~~~iLv~t~~~~~G 392 (475)
..++++||||+++..++.+++.|.+.+. .+.....+||+|+..+|.+++++|++ |+.+|||||+++++|
T Consensus 386 ~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~G 465 (555)
T 3tbk_A 386 LKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEG 465 (555)
T ss_dssp HCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCC
T ss_pred cCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcC
Confidence 3568999999999999999999987631 12344556679999999999999999 999999999999999
Q ss_pred CCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHH
Q 011884 393 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 442 (475)
Q Consensus 393 iDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~ 442 (475)
+|+|++++||++++|+|+..|+||+|| ||. +.|.+++++...+.....
T Consensus 466 lDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 466 IDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp EETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred CccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 999999999999999999999999999 998 699999999887665443
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.9e-38 Score=343.97 Aligned_cols=339 Identities=19% Similarity=0.202 Sum_probs=195.3
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhc-cccceEEEcccHHHHHHHhhhhhcc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~-~~~~vlil~Pt~~L~~q~~~~~~~~ 79 (475)
||+..|+|+|.+++..++. ++++++++|||+|||++++++++..+..... .+.++||++||++|+.|+++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~----- 314 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKN----- 314 (797)
T ss_dssp ----CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHH-----
T ss_pred cCCCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHH-----
Confidence 5788999999999887754 7899999999999999999999988776421 15689999999999999544
Q ss_pred cccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhH
Q 011884 80 CCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 159 (475)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
.+..+.+..++++..++|+........
T Consensus 315 ----------------------------------~~~~~~~~~~~~v~~~~g~~~~~~~~~------------------- 341 (797)
T 4a2q_A 315 ----------------------------------VFKHHFERQGYSVQGISGENFSNVSVE------------------- 341 (797)
T ss_dssp ----------------------------------HHHHHHGGGTCCEEEECCC-----CHH-------------------
T ss_pred ----------------------------------HHHHhcccCCceEEEEeCCcchhhhHH-------------------
Confidence 455555555889999999875444322
Q ss_pred HHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHH-HHhhHHHHHHhcccccccccccccccccccc
Q 011884 160 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238 (475)
Q Consensus 160 ~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~-~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
.+..+++|+|+||+++.+.+.......+.++++||+||||++...+ +...+..++.....
T Consensus 342 --~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~----------------- 402 (797)
T 4a2q_A 342 --KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN----------------- 402 (797)
T ss_dssp --HHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHT-----------------
T ss_pred --HhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhc-----------------
Confidence 2234679999999999998886443368889999999999976432 22222222221100
Q ss_pred ccchhhhccccccCCCCCCccchheeeeceeeccCc--------c---ccc------------------cccccCceee-
Q 011884 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP--------N---KLA------------------QLDLHHPLFL- 288 (475)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~--------~---~~~------------------~~~~~~~~~~- 288 (475)
...+..+.+++|||+.... . .+. ...+..+...
T Consensus 403 -----------------~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~ 465 (797)
T 4a2q_A 403 -----------------SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDV 465 (797)
T ss_dssp -----------------TCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEE
T ss_pred -----------------cCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEE
Confidence 0112336788888885311 0 000 0000000000
Q ss_pred -ecCccc----------------------------------cCCchhhhhhh----------------------------
Q 011884 289 -TTGETR----------------------------------YKLPERLESYK---------------------------- 305 (475)
Q Consensus 289 -~~~~~~----------------------------------~~~~~~~~~~~---------------------------- 305 (475)
...... ..-........
T Consensus 466 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 545 (797)
T 4a2q_A 466 RLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFIC 545 (797)
T ss_dssp EECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHH
T ss_pred EecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 000000 00000000000
Q ss_pred -------------------------------------------------------------hhccCCCcHHHHHHHHHh-
Q 011884 306 -------------------------------------------------------------LICESKLKPLYLVALLQS- 323 (475)
Q Consensus 306 -------------------------------------------------------------~~~~~~~~~~~l~~~l~~- 323 (475)
.......|...|.+++..
T Consensus 546 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~ 625 (797)
T 4a2q_A 546 TEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDA 625 (797)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHH
Confidence 000013355566666654
Q ss_pred ---cCCCeEEEEcCChHHHHHHHHHHhhcCC---------CceeeEEeccccCHHHHHHHHHHHHc-CCeEEEEEcCCcc
Q 011884 324 ---LGEEKCIVFTSSVESTHRLCTLLNHFGE---------LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMT 390 (475)
Q Consensus 324 ---~~~~~~lvf~~s~~~~~~l~~~l~~~~~---------~~~~~~~~~g~~~~~~r~~~~~~f~~-g~~~iLv~t~~~~ 390 (475)
..++++||||+++..++.+++.|++... .+.....+||+|+..+|.+++++|++ |+.+|||||++++
T Consensus 626 ~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~ 705 (797)
T 4a2q_A 626 YRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVAD 705 (797)
T ss_dssp HHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC--
T ss_pred hccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchh
Confidence 4678999999999999999999987421 13455667899999999999999999 9999999999999
Q ss_pred cCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHH
Q 011884 391 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 439 (475)
Q Consensus 391 ~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 439 (475)
+|||+|++++||++++|+|+..|+||+|| ||. +.|.+++++...+..
T Consensus 706 ~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 706 EGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp -----CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred cCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 99999999999999999999999999999 998 699999999886653
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-38 Score=347.47 Aligned_cols=328 Identities=18% Similarity=0.181 Sum_probs=234.5
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+|| .|+++|.+|+..+. ++++++++||||+|||+++.++++..+.. +.++||++|+++|+.|+++++.+
T Consensus 83 ~~f-~L~~~Q~eai~~l~----~g~~vLV~apTGSGKTlva~lai~~~l~~----g~rvL~l~PtkaLa~Q~~~~l~~-- 151 (1010)
T 2xgj_A 83 YPF-TLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALSNQKYRELLA-- 151 (1010)
T ss_dssp CSS-CCCHHHHHHHHHHH----HTCEEEEECCTTSCHHHHHHHHHHHHHHT----TCEEEEEESSHHHHHHHHHHHHH--
T ss_pred CCC-CCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHhcc----CCeEEEECChHHHHHHHHHHHHH--
Confidence 467 59999999987654 48899999999999999998888876643 45899999999999997665433
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
... .++.++|+....
T Consensus 152 -------------------------------------~~~----~vglltGd~~~~------------------------ 166 (1010)
T 2xgj_A 152 -------------------------------------EFG----DVGLMTGDITIN------------------------ 166 (1010)
T ss_dssp -------------------------------------HHS----CEEEECSSCEEC------------------------
T ss_pred -------------------------------------HhC----CEEEEeCCCccC------------------------
Confidence 222 566777775422
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
.+++|+|+||+++.+.+.... ..+.++++|||||+|++.+.+++..++.++..++.
T Consensus 167 ----~~~~IvV~Tpe~L~~~L~~~~-~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~------------------- 222 (1010)
T 2xgj_A 167 ----PDAGCLVMTTEILRSMLYRGS-EVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD------------------- 222 (1010)
T ss_dssp ----TTCSEEEEEHHHHHHHHHHTC-TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCT-------------------
T ss_pred ----CCCCEEEEcHHHHHHHHHcCc-chhhcCCEEEEechhhhcccchhHHHHHHHHhcCC-------------------
Confidence 235899999999988877633 56789999999999999777677777777765532
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCcc--ccccccccCceeeecCcccc-----------------------
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN--KLAQLDLHHPLFLTTGETRY----------------------- 295 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~--~~~~~~~~~~~~~~~~~~~~----------------------- 295 (475)
..+.+++|||+++... .+.......+..+......+
T Consensus 223 -------------------~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~ 283 (1010)
T 2xgj_A 223 -------------------KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKS 283 (1010)
T ss_dssp -------------------TCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTC
T ss_pred -------------------CCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeecccc
Confidence 3367899999865321 11111111111110000000
Q ss_pred -CCchhhhhhhhhc---------------------cC-------CCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 011884 296 -KLPERLESYKLIC---------------------ES-------KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 346 (475)
Q Consensus 296 -~~~~~~~~~~~~~---------------------~~-------~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l 346 (475)
............. .. ......+...+......++|||++++..|+.+++.|
T Consensus 284 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L 363 (1010)
T 2xgj_A 284 TFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKM 363 (1010)
T ss_dssp CBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHH
Confidence 0000000000000 00 122334555555556679999999999999999998
Q ss_pred hhcCCC------------------------------------ceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcc
Q 011884 347 NHFGEL------------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 390 (475)
Q Consensus 347 ~~~~~~------------------------------------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~ 390 (475)
...+.. ..++..+||+|+..+|..+++.|++|+.+|||||++++
T Consensus 364 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la 443 (1010)
T 2xgj_A 364 SKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFS 443 (1010)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGG
T ss_pred HhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhh
Confidence 763211 12388999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEE----ecC----CCCHHHHHHHhhhccccCCC--CcEEEEeech-hHHHHHHHHHH
Q 011884 391 RGMDVEGVNNVVN----YDK----PAYIKTYIHRAGRTARAGQL--GRCFTLLHKD-EVKRFKKLLQK 447 (475)
Q Consensus 391 ~GiDip~~~~Vv~----~~~----~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~-~~~~~~~l~~~ 447 (475)
+|||+|++++||. ++. |.|+..|.||+||+||.|.+ |.|+++++.. +...+++++..
T Consensus 444 ~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~ 511 (1010)
T 2xgj_A 444 IGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKG 511 (1010)
T ss_dssp GSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSC
T ss_pred ccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhC
Confidence 9999999999988 887 78999999999999999864 8888888765 66677777553
No 29
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.8e-38 Score=349.04 Aligned_cols=333 Identities=20% Similarity=0.303 Sum_probs=240.8
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||. | ++|.+++..++. |++++++||||||||+ +.++++..+.. .++++||++||++|+.|+++
T Consensus 54 ~g~~-p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl-~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~------ 117 (1054)
T 1gku_B 54 VGEP-R-AIQKMWAKRILR----KESFAATAPTGVGKTS-FGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAE------ 117 (1054)
T ss_dssp TCSC-C-HHHHHHHHHHHT----TCCEECCCCBTSCSHH-HHHHHHHHHHT---TSCCEEEEESCHHHHHHHHH------
T ss_pred cCCC-H-HHHHHHHHHHHh----CCCEEEEcCCCCCHHH-HHHHHHHHHhh---cCCeEEEEeccHHHHHHHHH------
Confidence 6898 9 999999887764 8999999999999998 77777776654 35689999999999999544
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccc----eEeEccCCCchHHHHHHHhhccccccCccCCc
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGL----SVGLAVGQSSIADEISELIKRPKLEAGICYDP 156 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (475)
.+..+....++ ++..++|+.+........
T Consensus 118 ---------------------------------~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~-------------- 150 (1054)
T 1gku_B 118 ---------------------------------TIRKYAEKAGVGTENLIGYYHGRIPKREKENFM-------------- 150 (1054)
T ss_dssp ---------------------------------HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHH--------------
T ss_pred ---------------------------------HHHHHHhhcCCCccceEEEEeCCCChhhHHHHH--------------
Confidence 45555555566 899999998765542211
Q ss_pred hhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccc
Q 011884 157 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 236 (475)
Q Consensus 157 ~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~ 236 (475)
..+.. ++|+|+||++|.+++.. +++++++|+||||++++ ++..++.++..+........
T Consensus 151 ----~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~--------- 209 (1054)
T 1gku_B 151 ----QNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKT--------- 209 (1054)
T ss_dssp ----HSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTT---------
T ss_pred ----hhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhh---------
Confidence 22333 79999999999987765 55899999999999876 45666777665432111000
Q ss_pred ccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHH
Q 011884 237 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 316 (475)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (475)
.......+.+++|||+++. ..+....+..+..+......... ..+.+... ...+...
T Consensus 210 ------------------~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~-~~i~~~~~---~~~k~~~ 266 (1054)
T 1gku_B 210 ------------------KSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITV-RNVEDVAV---NDESIST 266 (1054)
T ss_dssp ------------------TEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECC-CCEEEEEE---SCCCTTT
T ss_pred ------------------hhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCc-CCceEEEe---chhHHHH
Confidence 0001234679999999887 54443333333222222211111 12222221 3456666
Q ss_pred HHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEE----cCCcccC
Q 011884 317 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRG 392 (475)
Q Consensus 317 l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~----t~~~~~G 392 (475)
+.+++... ++++||||+++..++.+++.|++. +++..+||++ .++++.|++|+.+|||| |+++++|
T Consensus 267 L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~----~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rG 336 (1054)
T 1gku_B 267 LSSILEKL-GTGGIIYARTGEEAEEIYESLKNK----FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRG 336 (1054)
T ss_dssp THHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS----SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CC
T ss_pred HHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc----cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEec
Confidence 77777665 578999999999999999999864 6889999998 37789999999999999 8999999
Q ss_pred CCCCCC-cEEEEecCC----------------------------------------------------------------
Q 011884 393 MDVEGV-NNVVNYDKP---------------------------------------------------------------- 407 (475)
Q Consensus 393 iDip~~-~~Vv~~~~~---------------------------------------------------------------- 407 (475)
+|+|+| ++||+++.|
T Consensus 337 IDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 416 (1054)
T 1gku_B 337 LDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVV 416 (1054)
T ss_dssp SCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEE
T ss_pred cccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeE
Confidence 999996 999999999
Q ss_pred -------CCHHHHHHHhhhccccCCCC--cEEEEeechhHHHHHHHHHHhcC
Q 011884 408 -------AYIKTYIHRAGRTARAGQLG--RCFTLLHKDEVKRFKKLLQKADN 450 (475)
Q Consensus 408 -------~s~~~~~Q~~GR~~R~~~~g--~~~~~~~~~~~~~~~~l~~~~~~ 450 (475)
.+...|+||+||+||.|..| .+++++..++...++.+.+.+..
T Consensus 417 ~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 417 REGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp ETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred eecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999977554 58888888888888888777764
No 30
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=8.4e-39 Score=364.71 Aligned_cols=364 Identities=18% Similarity=0.222 Sum_probs=252.0
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh-------ccccceEEEcccHHHHHHHhh
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-------VRCLRALVVLPTRDLALQVNS 74 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~-------~~~~~vlil~Pt~~L~~q~~~ 74 (475)
||.+|+++|.+++..++. ++++++++||||||||+++.+++++.+.... .++.++||++|+++|+.|.++
T Consensus 76 g~~~ln~iQs~~~~~al~---~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~ 152 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALE---TDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVG 152 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHT---CCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc---CCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHH
Confidence 799999999999988776 6899999999999999999999999887532 135689999999999999544
Q ss_pred hhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccC
Q 011884 75 ARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 154 (475)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (475)
.+.+.....++++..++|+......
T Consensus 153 ---------------------------------------~l~~~~~~~gi~V~~~tGd~~~~~~---------------- 177 (1724)
T 4f92_B 153 ---------------------------------------SFGKRLATYGITVAELTGDHQLCKE---------------- 177 (1724)
T ss_dssp ---------------------------------------HHHHHHTTTTCCEEECCSSCSSCCT----------------
T ss_pred ---------------------------------------HHHHHHhhCCCEEEEEECCCCCCcc----------------
Confidence 4444445568899999998753322
Q ss_pred CchhHHHhhhcCCcEEEeCchHHHHHhhcCCC-cccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccc
Q 011884 155 DPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 233 (475)
Q Consensus 155 ~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~-~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ 233 (475)
...+++|+||||+++..++++... ..++.+++||+||+|.+.+ .++..++.++.++.......
T Consensus 178 --------~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~------- 241 (1724)
T 4f92_B 178 --------EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMT------- 241 (1724)
T ss_dssp --------TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHHH-------
T ss_pred --------ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHhC-------
Confidence 113579999999998665555332 2478899999999997754 57777777776543210000
Q ss_pred cccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCce--eeecCccccCCchhhhhhhhhccCC
Q 011884 234 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL--FLTTGETRYKLPERLESYKLICESK 311 (475)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (475)
.+..++|++|||+++ ..+++...-..+. ........ .|.++.+.+......
T Consensus 242 ------------------------~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~--RPvpL~~~~~~~~~~ 294 (1724)
T 4f92_B 242 ------------------------QEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSF--RPVPLEQTYVGITEK 294 (1724)
T ss_dssp ------------------------TCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGG--CSSCEEEECCEECCC
T ss_pred ------------------------CCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCC--ccCccEEEEeccCCc
Confidence 013478999999964 4444432222110 11111111 111222222111111
Q ss_pred Cc---H----HHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHhhcCC--------------------------------
Q 011884 312 LK---P----LYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGE-------------------------------- 351 (475)
Q Consensus 312 ~~---~----~~l~~~l~~~-~~~~~lvf~~s~~~~~~l~~~l~~~~~-------------------------------- 351 (475)
.. . ..+.+.+.+. .++++||||+|+..|+..++.|.+...
T Consensus 295 ~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 374 (1724)
T 4f92_B 295 KAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELK 374 (1724)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHH
Confidence 11 1 2223333332 567899999999999999888765210
Q ss_pred --CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEE----ec------CCCCHHHHHHHhhh
Q 011884 352 --LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD------KPAYIKTYIHRAGR 419 (475)
Q Consensus 352 --~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~----~~------~~~s~~~~~Q~~GR 419 (475)
...+++++||||+..+|..+.+.|++|..++||||+++++|||+|..++||. ++ .|.++.+|.||+||
T Consensus 375 ~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GR 454 (1724)
T 4f92_B 375 DLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGR 454 (1724)
T ss_dssp HHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTT
T ss_pred HHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhh
Confidence 1235889999999999999999999999999999999999999999888874 33 24689999999999
Q ss_pred ccccCC--CCcEEEEeechhHHHHHHHHHHhcCCCCCccCCChhhhhhhhcc
Q 011884 420 TARAGQ--LGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPV 469 (475)
Q Consensus 420 ~~R~~~--~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
|||.|. .|.++++...++...+..++..... -...+.+.+.+.|.++
T Consensus 455 AGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~p---ieS~l~~~l~d~L~ae 503 (1724)
T 4f92_B 455 AGRPQYDTKGEGILITSHGELQYYLSLLNQQLP---IESQMVSKLPDMLNAE 503 (1724)
T ss_dssp BSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSC---CCCCTTTTHHHHHHHH
T ss_pred ccCCCCCCccEEEEEecchhHHHHHHHHcCCCc---chhhccccHHHHHHHH
Confidence 999875 4888888888888888877654321 1223445555555544
No 31
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=6.4e-38 Score=346.01 Aligned_cols=335 Identities=18% Similarity=0.259 Sum_probs=235.2
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+|| +|+|+|.+|+..++. +++++++||||||||++++.+++..+. .+.++||++||++|+.|+++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~~----~~~~~Lil~PtreLa~Q~~~------ 139 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTLE------ 139 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHHH------
T ss_pred cCC-CCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHHh----cCCeEEEEechHHHHHHHHH------
Confidence 477 799999999877655 899999999999999988787776652 45689999999999999544
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.+..+. ..++++..++|+.+..+.... .
T Consensus 140 ---------------------------------~l~~l~-~~~i~v~~l~Gg~~~~er~~~------------------~ 167 (1104)
T 4ddu_A 140 ---------------------------------RLQKLA-DEKVKIFGFYSSMKKEEKEKF------------------E 167 (1104)
T ss_dssp ---------------------------------HHHTTS-CTTSCEEEECTTCCTTHHHHH------------------H
T ss_pred ---------------------------------HHHHhh-CCCCeEEEEeCCCCHHHHHHH------------------H
Confidence 444544 557899999999876332111 1
Q ss_pred HhhhcC-CcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHH-----------HHHHhh-HHHHHHhccccccccc
Q 011884 161 QELQSA-VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-----------EAYQAW-LPTVLQLTRSDNENRF 227 (475)
Q Consensus 161 ~~~~~~-~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~-----------~~~~~~-i~~i~~~~~~~~~~~~ 227 (475)
..+..+ ++|+|+||+++.+++.. +.+.++++||+||||++.. .++... +..++..++...
T Consensus 168 ~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~---- 240 (1104)
T 4ddu_A 168 KSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGK---- 240 (1104)
T ss_dssp HHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTS----
T ss_pred HHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccch----
Confidence 223333 89999999999887764 5677899999999998653 222223 555555443100
Q ss_pred cccccccccccccchhhhccccccCCCCCCccchheeeeceeecc-CccccccccccCceeeecCccccCCchhhhhhhh
Q 011884 228 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL 306 (475)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (475)
... ........+.+++|||+.+ ....... ..+..+..... ......+.+...
T Consensus 241 -~~~----------------------~~~~~~~~q~ll~SAT~~p~~~~~~~~---~~~l~i~v~~~-~~~~~~i~~~~~ 293 (1104)
T 4ddu_A 241 -IYE----------------------RPKNLKPGILVVSSATAKPRGIRPLLF---RDLLNFTVGRL-VSVARNITHVRI 293 (1104)
T ss_dssp -CCC----------------------CCSSCCCCEEEEECBSSCCCSSTTHHH---HHHTCCCCCBC-CCCCCCEEEEEE
T ss_pred -hhh----------------------hhccCCCceEEEEcCCCCcHHHHHHHh---hcceeEEeccC-CCCcCCceeEEE
Confidence 000 0000024478999999543 3332111 11111111111 111222222222
Q ss_pred hccCCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeE-EeccccCHHHHHHHHHHHHcCCeEEEEE
Q 011884 307 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK-EYSGLQRQSVRSKTLKAFREGKIQVLVS 385 (475)
Q Consensus 307 ~~~~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~-~~~g~~~~~~r~~~~~~f~~g~~~iLv~ 385 (475)
.. .+...+.+++... ++++||||+++..++.++..|+..+ +.+. .+||. |.+ ++.|++|+.+||||
T Consensus 294 ~~---~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g---~~~~~~lhg~-----rr~-l~~F~~G~~~VLVa 360 (1104)
T 4ddu_A 294 SS---RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFK---FNVGETWSEF-----EKN-FEDFKVGKINILIG 360 (1104)
T ss_dssp SC---CCHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTT---CCEEESSSSH-----HHH-HHHHHHTSCSEEEE
T ss_pred ec---CHHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCC---CCeeeEecCc-----HHH-HHHHHCCCCCEEEE
Confidence 22 5677777777774 5899999999999999999999876 7887 89982 555 99999999999999
Q ss_pred ----cCCcccCCCCCC-CcEEEEecCCC----------------------------------------------------
Q 011884 386 ----SDAMTRGMDVEG-VNNVVNYDKPA---------------------------------------------------- 408 (475)
Q Consensus 386 ----t~~~~~GiDip~-~~~Vv~~~~~~---------------------------------------------------- 408 (475)
|+++++|+|+|+ +++||++++|.
T Consensus 361 tas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~ 440 (1104)
T 4ddu_A 361 VQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEK 440 (1104)
T ss_dssp ETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_pred ecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999 99999999998
Q ss_pred --------------------CHHHHHHHhhhccccCCC--CcEEEEeechhHHHHHHHHHHhc
Q 011884 409 --------------------YIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKKLLQKAD 449 (475)
Q Consensus 409 --------------------s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~l~~~~~ 449 (475)
+..+|+||+||+||.+.. ++++.++..+|.+.++.+.+.+.
T Consensus 441 i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 441 VKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred HhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 778999999999996533 34555555567777777766664
No 32
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=6.7e-38 Score=357.31 Aligned_cols=344 Identities=20% Similarity=0.209 Sum_probs=244.4
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 81 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 81 (475)
+|..++|.|.+++..+++ .+++++++||||||||+++.+++++.+.+. ++.+++|++|+++|+.|.+++
T Consensus 923 ~f~~fnpiQ~q~~~~l~~---~~~nvlv~APTGSGKTliaelail~~l~~~--~~~kavyi~P~raLa~q~~~~------ 991 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVYN---SDDNVFVGAPTGSGKTICAEFAILRMLLQS--SEGRCVYITPMEALAEQVYMD------ 991 (1724)
T ss_dssp TCSBCCHHHHHHHHHHHS---CCSCEEEECCTTSCCHHHHHHHHHHHHHHC--TTCCEEEECSCHHHHHHHHHH------
T ss_pred cCCCCCHHHHHHHHHHhc---CCCcEEEEeCCCCCchHHHHHHHHHHHHhC--CCCEEEEEcChHHHHHHHHHH------
Confidence 688999999999888766 578999999999999999999999988764 456899999999999995333
Q ss_pred cccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHH
Q 011884 82 KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (475)
....++...+.++..++|+.......
T Consensus 992 --------------------------------~~~~f~~~~g~~V~~ltGd~~~~~~~---------------------- 1017 (1724)
T 4f92_B 992 --------------------------------WYEKFQDRLNKKVVLLTGETSTDLKL---------------------- 1017 (1724)
T ss_dssp --------------------------------HHHHHTTTSCCCEEECCSCHHHHHHH----------------------
T ss_pred --------------------------------HHHHhchhcCCEEEEEECCCCcchhh----------------------
Confidence 22345566789999999986533221
Q ss_pred hhhcCCcEEEeCchHHHHHhhcCCC-cccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 162 ELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 162 ~~~~~~~Iii~Tp~~l~~~l~~~~~-~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
..+++|+|+||+++..++++... ..+++++++|+||+|.+.+ .++..++.++.++......
T Consensus 1018 --~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~--------------- 1079 (1724)
T 4f92_B 1018 --LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQ--------------- 1079 (1724)
T ss_dssp --HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHT---------------
T ss_pred --cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhh---------------
Confidence 12468999999998777765443 3478899999999998754 4666677766655321100
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCcccccc-ccccCceeeecCccccCCchhhhhhhhhccCC-------C
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LDLHHPLFLTTGETRYKLPERLESYKLICESK-------L 312 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 312 (475)
..+..++|++|||+++ ..++.. ++......+.........+ +.......... .
T Consensus 1080 ----------------~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvp--L~~~i~~~~~~~~~~~~~~ 1140 (1724)
T 4f92_B 1080 ----------------IERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVP--LELHIQGFNISHTQTRLLS 1140 (1724)
T ss_dssp ----------------TSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSC--EEEEEEEECCCSHHHHHHT
T ss_pred ----------------cCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCC--eEEEEEeccCCCchhhhhh
Confidence 0123478999999974 344333 3332222222222211111 11111111110 1
Q ss_pred cHHHHHHHHH-hcCCCeEEEEcCChHHHHHHHHHHhhcCC-------------------------------CceeeEEec
Q 011884 313 KPLYLVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGE-------------------------------LRIKIKEYS 360 (475)
Q Consensus 313 ~~~~l~~~l~-~~~~~~~lvf~~s~~~~~~l~~~l~~~~~-------------------------------~~~~~~~~~ 360 (475)
....+...+. ...++++||||+|+..|+..+..|..... ...+++++|
T Consensus 1141 ~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hH 1220 (1724)
T 4f92_B 1141 MAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLH 1220 (1724)
T ss_dssp THHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEEC
T ss_pred hcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEEC
Confidence 1122233333 34677999999999999998877644210 023589999
Q ss_pred cccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEE----ec------CCCCHHHHHHHhhhccccCC--CCc
Q 011884 361 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD------KPAYIKTYIHRAGRTARAGQ--LGR 428 (475)
Q Consensus 361 g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~----~~------~~~s~~~~~Q~~GR~~R~~~--~g~ 428 (475)
|+|+..+|..+++.|++|..+|||||+++++|||+|...+||. ++ .|.++.+|.||+|||||.|. .|.
T Consensus 1221 agL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~ 1300 (1724)
T 4f92_B 1221 EGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGR 1300 (1724)
T ss_dssp TTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceE
Confidence 9999999999999999999999999999999999998887773 21 35689999999999999986 488
Q ss_pred EEEEeechhHHHHHHHHHH
Q 011884 429 CFTLLHKDEVKRFKKLLQK 447 (475)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~~ 447 (475)
+++++...+...+++++..
T Consensus 1301 avll~~~~~~~~~~~ll~~ 1319 (1724)
T 4f92_B 1301 CVIMCQGSKKDFFKKFLYE 1319 (1724)
T ss_dssp EEEEEEGGGHHHHHHHTTS
T ss_pred EEEEecchHHHHHHHHhCC
Confidence 8888888888888888654
No 33
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.7e-38 Score=335.09 Aligned_cols=318 Identities=18% Similarity=0.218 Sum_probs=224.7
Q ss_pred CCCCcccchhhhhhhhhcCCCCCC--CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~--~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
+|| +|+++|.+|+..+...+.++ ++++++||||||||++++++++..+.. +.+++|++||++|+.|+++
T Consensus 365 lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~----g~qvlvlaPtr~La~Q~~~---- 435 (780)
T 1gm5_A 365 LPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA----GFQTAFMVPTSILAIQHYR---- 435 (780)
T ss_dssp SSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH----TSCEEEECSCHHHHHHHHH----
T ss_pred CCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHH----
Confidence 578 89999999999888755444 589999999999999999999887754 4589999999999999544
Q ss_pred ccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchh
Q 011884 79 YCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 158 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
.+..+....++++..++|+.........+
T Consensus 436 -----------------------------------~l~~~~~~~gi~v~~l~G~~~~~~r~~~~---------------- 464 (780)
T 1gm5_A 436 -----------------------------------RTVESFSKFNIHVALLIGATTPSEKEKIK---------------- 464 (780)
T ss_dssp -----------------------------------HHHHHHTCSSCCEEECCSSSCHHHHHHHH----------------
T ss_pred -----------------------------------HHHHHhhhcCceEEEEeCCCCHHHHHHHH----------------
Confidence 45555555688999999998765543222
Q ss_pred HHHhhhc-CCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccc
Q 011884 159 VLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 159 ~~~~~~~-~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
..+.. .++|+|+||+.+.+ ...+.+++++|+||+|++...... .+.
T Consensus 465 --~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~g~~qr~--------~l~----------------- 511 (780)
T 1gm5_A 465 --SGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRFGVKQRE--------ALM----------------- 511 (780)
T ss_dssp --HHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC-----C--------CCC-----------------
T ss_pred --HHHhcCCCCEEEECHHHHhh------hhhccCCceEEecccchhhHHHHH--------HHH-----------------
Confidence 22333 47999999998754 245678999999999986321110 000
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHH
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 317 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 317 (475)
......+.+++|||+.+........+..+...+..... ....+.. ......+...+
T Consensus 512 ------------------~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~---~r~~i~~---~~~~~~~~~~l 567 (780)
T 1gm5_A 512 ------------------NKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPP---GRKEVQT---MLVPMDRVNEV 567 (780)
T ss_dssp ------------------SSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCS---SCCCCEE---CCCCSSTHHHH
T ss_pred ------------------HhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCC---CCcceEE---EEeccchHHHH
Confidence 00023478999999876544333222211111111100 0011111 11122333444
Q ss_pred HHHHHhc--CCCeEEEEcCChH--------HHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC
Q 011884 318 VALLQSL--GEEKCIVFTSSVE--------STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 387 (475)
Q Consensus 318 ~~~l~~~--~~~~~lvf~~s~~--------~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~ 387 (475)
.+.+... .+++++|||++.+ .++.+++.|.+..-.+..+..+||+|+..+|.++++.|++|+.+|||||+
T Consensus 568 ~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~ 647 (780)
T 1gm5_A 568 YEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT 647 (780)
T ss_dssp HHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS
T ss_pred HHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC
Confidence 4444432 5678999999764 46777777776111247899999999999999999999999999999999
Q ss_pred CcccCCCCCCCcEEEEecCCC-CHHHHHHHhhhccccCCCCcEEEEeec
Q 011884 388 AMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAGQLGRCFTLLHK 435 (475)
Q Consensus 388 ~~~~GiDip~~~~Vv~~~~~~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 435 (475)
++++|+|+|++++||+++.|. +...+.|++||+||.|+.|.|+++++.
T Consensus 648 vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 648 VIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp CCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred CCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 999999999999999999986 788999999999999999999999873
No 34
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.6e-37 Score=340.24 Aligned_cols=338 Identities=19% Similarity=0.214 Sum_probs=194.5
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhc-cccceEEEcccHHHHHHHhhhhhccc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~-~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
|+.+|+|+|.+++..++. |+++++++|||+|||++++++++..+..... .+.++||++||++|+.|++++
T Consensus 245 ~~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~----- 315 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNV----- 315 (936)
T ss_dssp ---CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHH-----
T ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHH-----
Confidence 577899999999887754 7899999999999999999998887765311 156899999999999995544
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
+..+.+..++++..++|+.........
T Consensus 316 ----------------------------------~~~~~~~~~~~v~~~~G~~~~~~~~~~------------------- 342 (936)
T 4a2w_A 316 ----------------------------------FKHHFERQGYSVQGISGENFSNVSVEK------------------- 342 (936)
T ss_dssp ----------------------------------HHHHHHTTTCCEEEECCC-----CCHH-------------------
T ss_pred ----------------------------------HHHHhcccCceEEEEECCcchhhHHHH-------------------
Confidence 455555557899999998754433221
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHH-HHhhHHHHHHhccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 239 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~-~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 239 (475)
+..+++|+|+||+++.+.+.......+.++++||+||||++...+ +...+..++.....
T Consensus 343 --~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~------------------ 402 (936)
T 4a2w_A 343 --VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN------------------ 402 (936)
T ss_dssp --HHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHT------------------
T ss_pred --hccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhc------------------
Confidence 223469999999999999887543367889999999999875432 22222222221100
Q ss_pred cchhhhccccccCCCCCCccchheeeeceeeccCcc-c----------cc------------------cccccCceeeec
Q 011884 240 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN-K----------LA------------------QLDLHHPLFLTT 290 (475)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~-~----------~~------------------~~~~~~~~~~~~ 290 (475)
...+..+.+++|||+..... . +. ......+.....
T Consensus 403 ----------------~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~ 466 (936)
T 4a2w_A 403 ----------------SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVR 466 (936)
T ss_dssp ----------------TCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEE
T ss_pred ----------------cCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEE
Confidence 01122357888888743110 0 00 000000100000
Q ss_pred Cccc-cC-----------------------------------C--------------------chh--------------
Q 011884 291 GETR-YK-----------------------------------L--------------------PER-------------- 300 (475)
Q Consensus 291 ~~~~-~~-----------------------------------~--------------------~~~-------------- 300 (475)
.... .. - +..
T Consensus 467 ~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~ 546 (936)
T 4a2w_A 467 LVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICT 546 (936)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred ecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 0000 00 0 000
Q ss_pred ------------------------hhhhhh-------------------------------hccCCCcHHHHHHHHHh--
Q 011884 301 ------------------------LESYKL-------------------------------ICESKLKPLYLVALLQS-- 323 (475)
Q Consensus 301 ------------------------~~~~~~-------------------------------~~~~~~~~~~l~~~l~~-- 323 (475)
+..... ......|...|.+++.+
T Consensus 547 ~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~ 626 (936)
T 4a2w_A 547 EHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 626 (936)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHh
Confidence 000000 00023355666667765
Q ss_pred --cCCCeEEEEcCChHHHHHHHHHHhhcCC---------CceeeEEeccccCHHHHHHHHHHHHc-CCeEEEEEcCCccc
Q 011884 324 --LGEEKCIVFTSSVESTHRLCTLLNHFGE---------LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTR 391 (475)
Q Consensus 324 --~~~~~~lvf~~s~~~~~~l~~~l~~~~~---------~~~~~~~~~g~~~~~~r~~~~~~f~~-g~~~iLv~t~~~~~ 391 (475)
..++++||||+++..++.+++.|.+... .+.....+||+|+..+|.+++++|++ |+.+|||+|+++++
T Consensus 627 ~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~e 706 (936)
T 4a2w_A 627 RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADE 706 (936)
T ss_dssp TSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC---
T ss_pred ccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhc
Confidence 3568999999999999999999997521 12445566899999999999999999 99999999999999
Q ss_pred CCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHH
Q 011884 392 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 439 (475)
Q Consensus 392 GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 439 (475)
|||+|++++||++++|+|+..|+||+|| ||. +.|.+++++...+..
T Consensus 707 GIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 707 GIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp ---CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 9999999999999999999999999999 998 589999998876553
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.3e-37 Score=340.84 Aligned_cols=344 Identities=15% Similarity=0.133 Sum_probs=239.6
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
|+| .|+++|.+++..+.. +++++++||||||||+++++++...+. .+.+++|++|+++|+.|+++++.++
T Consensus 36 ~~f-~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~----~g~~vlvl~PtraLa~Q~~~~l~~~- 105 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHR----NMTKTIYTSPIKALSNQKFRDFKET- 105 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHH----TTCEEEEEESCGGGHHHHHHHHHTT-
T ss_pred CCC-CCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHHHHHHHHH-
Confidence 466 689999998876654 899999999999999998888776543 3457999999999999966554332
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.. +..+..++|+....
T Consensus 106 --------------------------------------~~--~~~v~~l~G~~~~~------------------------ 121 (997)
T 4a4z_A 106 --------------------------------------FD--DVNIGLITGDVQIN------------------------ 121 (997)
T ss_dssp --------------------------------------C----CCEEEECSSCEEC------------------------
T ss_pred --------------------------------------cC--CCeEEEEeCCCccC------------------------
Confidence 22 56788888876422
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
..++|+|+||+.|.+.+.... ..+.++++|||||||++.+.+++..++.++..+..
T Consensus 122 ----~~~~IlV~Tpe~L~~~l~~~~-~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~------------------- 177 (997)
T 4a4z_A 122 ----PDANCLIMTTEILRSMLYRGA-DLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQ------------------- 177 (997)
T ss_dssp ----TTSSEEEEEHHHHHHHHHHTC-SGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCT-------------------
T ss_pred ----CCCCEEEECHHHHHHHHHhCc-hhhcCCCEEEEECcccccccchHHHHHHHHHhccc-------------------
Confidence 235899999999988887633 55788999999999998777777777777766543
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCcccccccc--------------ccCceeeec----------CccccC
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD--------------LHHPLFLTT----------GETRYK 296 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~--------------~~~~~~~~~----------~~~~~~ 296 (475)
..+.+++|||+++......... -..|..... ......
T Consensus 178 -------------------~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~ 238 (997)
T 4a4z_A 178 -------------------HVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEF 238 (997)
T ss_dssp -------------------TCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCB
T ss_pred -------------------CCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhh
Confidence 2367888999864321111100 000110000 000000
Q ss_pred Cchh--------------------------------------------------------------------hhhhhhhc
Q 011884 297 LPER--------------------------------------------------------------------LESYKLIC 308 (475)
Q Consensus 297 ~~~~--------------------------------------------------------------------~~~~~~~~ 308 (475)
.... ........
T Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (997)
T 4a4z_A 239 LEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDG 318 (997)
T ss_dssp CHHHHHHHHHHHC-----------------------------------------------------------------CC
T ss_pred hHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000 00000111
Q ss_pred cCCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCC------------------------------------
Q 011884 309 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL------------------------------------ 352 (475)
Q Consensus 309 ~~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~------------------------------------ 352 (475)
....+...+...+.....+++||||+++..|+.++..|...+..
T Consensus 319 ~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l 398 (997)
T 4a4z_A 319 PSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLL 398 (997)
T ss_dssp CCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHh
Confidence 22334567777777777789999999999999999999764311
Q ss_pred ceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCCC---------CHHHHHHHhhhcccc
Q 011884 353 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA---------YIKTYIHRAGRTARA 423 (475)
Q Consensus 353 ~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~---------s~~~~~Q~~GR~~R~ 423 (475)
..++..+||+|+..+|..+++.|.+|..+|||||+++++|+|+|+ ..||+.+.++ |+.+|.|++||+||.
T Consensus 399 ~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~ 477 (997)
T 4a4z_A 399 ERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 477 (997)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCT
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccC
Confidence 125789999999999999999999999999999999999999999 5566666555 999999999999998
Q ss_pred CCC--CcEEEEe--echhHHHHHHHHHHhcCCCCCccCCChhh
Q 011884 424 GQL--GRCFTLL--HKDEVKRFKKLLQKADNDSCPIHSIPSSL 462 (475)
Q Consensus 424 ~~~--g~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 462 (475)
|.+ |.|+++. +..+...+++++........+...+.-++
T Consensus 478 G~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm 520 (997)
T 4a4z_A 478 GLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNM 520 (997)
T ss_dssp TTCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHH
T ss_pred CCCcceEEEEecCCCcchHHHHHHHhcCCCcccccccccchHH
Confidence 844 5566665 33566777777665554444444444443
No 36
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.1e-36 Score=338.32 Aligned_cols=318 Identities=17% Similarity=0.191 Sum_probs=232.1
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCC--cEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~--~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
||| .|+|+|.+|+..++..+.+++ ++++++|||+|||.+++.+++..+.. +.+++|++||++|+.|++++
T Consensus 600 f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~----g~~vlvlvPt~~La~Q~~~~--- 671 (1151)
T 2eyq_A 600 FPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN----HKQVAVLVPTTLLAQQHYDN--- 671 (1151)
T ss_dssp CCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT----TCEEEEECSSHHHHHHHHHH---
T ss_pred CCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh----CCeEEEEechHHHHHHHHHH---
Confidence 577 579999999998887666665 89999999999999998888776543 44899999999999996555
Q ss_pred ccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchh
Q 011884 79 YCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 158 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
+.......++++..++|.....+....
T Consensus 672 ------------------------------------~~~~~~~~~i~v~~l~~~~~~~~~~~~----------------- 698 (1151)
T 2eyq_A 672 ------------------------------------FRDRFANWPVRIEMISRFRSAKEQTQI----------------- 698 (1151)
T ss_dssp ------------------------------------HHHHSTTTTCCEEEESTTSCHHHHHHH-----------------
T ss_pred ------------------------------------HHHHhhcCCCeEEEEeCCCCHHHHHHH-----------------
Confidence 444444456778888776654443221
Q ss_pred HHHhhhc-CCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccc
Q 011884 159 VLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 159 ~~~~~~~-~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
...+.. .++|+|+||+.+. ....+.++++||+||+|++... ....+..+..
T Consensus 699 -~~~l~~g~~dIvV~T~~ll~------~~~~~~~l~lvIiDEaH~~g~~-----~~~~l~~l~~---------------- 750 (1151)
T 2eyq_A 699 -LAEVAEGKIDILIGTHKLLQ------SDVKFKDLGLLIVDEEHRFGVR-----HKERIKAMRA---------------- 750 (1151)
T ss_dssp -HHHHHTTCCSEEEECTHHHH------SCCCCSSEEEEEEESGGGSCHH-----HHHHHHHHHT----------------
T ss_pred -HHHHhcCCCCEEEECHHHHh------CCccccccceEEEechHhcChH-----HHHHHHHhcC----------------
Confidence 122333 4799999998763 2355788999999999996322 1222222211
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHH
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 317 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 317 (475)
..+.+++|||+.++.......++.+...+....... ..+... .....+....
T Consensus 751 ----------------------~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r---~~i~~~---~~~~~~~~i~ 802 (1151)
T 2eyq_A 751 ----------------------NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR---LAVKTF---VREYDSMVVR 802 (1151)
T ss_dssp ----------------------TSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBC---BCEEEE---EEECCHHHHH
T ss_pred ----------------------CCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCc---cccEEE---EecCCHHHHH
Confidence 236799999998776665555555444332221110 011111 1111222223
Q ss_pred HHHHHhc-CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCC
Q 011884 318 VALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 396 (475)
Q Consensus 318 ~~~l~~~-~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip 396 (475)
..++... .+++++|||++++.++.+++.|++.. ++..+..+||+|+..+|++++++|++|+.+|||||+++++|+|+|
T Consensus 803 ~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~-p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip 881 (1151)
T 2eyq_A 803 EAILREILRGGQVYYLYNDVENIQKAAERLAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 881 (1151)
T ss_dssp HHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHC-TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCT
T ss_pred HHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC-CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeeccc
Confidence 3333332 57899999999999999999999863 237899999999999999999999999999999999999999999
Q ss_pred CCcEEEEecC-CCCHHHHHHHhhhccccCCCCcEEEEeech
Q 011884 397 GVNNVVNYDK-PAYIKTYIHRAGRTARAGQLGRCFTLLHKD 436 (475)
Q Consensus 397 ~~~~Vv~~~~-~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 436 (475)
++++||+++. +.+...+.|++||+||.|+.|.|++++..+
T Consensus 882 ~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 882 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999987 568999999999999999999999998754
No 37
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=332.19 Aligned_cols=108 Identities=21% Similarity=0.377 Sum_probs=90.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcC---CCceeeEEeccc--------cCHHHHHHHHHHHHcCCeEEEEEcCCcccCCC
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFG---ELRIKIKEYSGL--------QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 394 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~---~~~~~~~~~~g~--------~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiD 394 (475)
++++||||+++..++.+++.|++.. ..++.+..+||+ |+..+|.+++++|++|+.+|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 7899999999999999999998751 124889999999 99999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeec
Q 011884 395 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 435 (475)
Q Consensus 395 ip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 435 (475)
+|++++||++++|+|+..|.||+||+||.| +.++++...
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~ 518 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHS 518 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEES
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeC
Confidence 999999999999999999999999976654 444444443
No 38
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=5.1e-37 Score=314.28 Aligned_cols=289 Identities=25% Similarity=0.306 Sum_probs=207.1
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
.|+|+|.+|+..++. ++++++++|||+|||++++.++... +.++||++|+++|+.||+++++++
T Consensus 93 ~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~~~~~~~~----- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----- 156 (472)
T ss_dssp CBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHHHHHGGGG-----
T ss_pred CcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEECCHHHHHHHHHHHHhC-----
Confidence 699999999887655 5679999999999999998877653 347999999999999976665332
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccce-EeEccCCCchHHHHHHHhhccccccCccCCchhHHHhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 163 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (475)
+.. +..++|+..
T Consensus 157 --------------------------------------~~~~v~~~~g~~~----------------------------- 169 (472)
T 2fwr_A 157 --------------------------------------GEEYVGEFSGRIK----------------------------- 169 (472)
T ss_dssp --------------------------------------CGGGEEEBSSSCB-----------------------------
T ss_pred --------------------------------------CCcceEEECCCcC-----------------------------
Confidence 456 777777653
Q ss_pred hcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchh
Q 011884 164 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 243 (475)
Q Consensus 164 ~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (475)
..++|+|+||+.+...+... ..++++||+||+|++.+..+.. +...+.
T Consensus 170 -~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~~----------------------- 217 (472)
T 2fwr_A 170 -ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMSI----------------------- 217 (472)
T ss_dssp -CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTCC-----------------------
T ss_pred -CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhcC-----------------------
Confidence 13589999999987765431 2458999999999986544332 332221
Q ss_pred hhccccccCCCCCCccchheeeeceeeccC-------------------ccccccccccCceeeecCcc----c------
Q 011884 244 IRRCGVERGFKDKPYPRLVKMVLSATLTQD-------------------PNKLAQLDLHHPLFLTTGET----R------ 294 (475)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~-------------------~~~~~~~~~~~~~~~~~~~~----~------ 294 (475)
..+.+++|||+.+. ...+....+..+........ .
T Consensus 218 ----------------~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 281 (472)
T 2fwr_A 218 ----------------APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEK 281 (472)
T ss_dssp ----------------CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTT
T ss_pred ----------------CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHH
Confidence 11456777777531 11111111111111000000 0
Q ss_pred ---------------cCCchhh---------------------hhhhhhccCCCcHHHHHHHHHhcCCCeEEEEcCChHH
Q 011884 295 ---------------YKLPERL---------------------ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 338 (475)
Q Consensus 295 ---------------~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~s~~~ 338 (475)
....... ...........+...+.+++....++++||||++++.
T Consensus 282 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~ 361 (472)
T 2fwr_A 282 REKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNEL 361 (472)
T ss_dssp TTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHH
T ss_pred HHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHH
Confidence 0000000 0011123344567788888888888999999999999
Q ss_pred HHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhh
Q 011884 339 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 418 (475)
Q Consensus 339 ~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~G 418 (475)
++.+++.|. +..+||+++..+|+++++.|++|+.+|||+|+++++|+|+|++++||+++.|+|+..|.|++|
T Consensus 362 ~~~l~~~l~--------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~G 433 (472)
T 2fwr_A 362 VYRISKVFL--------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLG 433 (472)
T ss_dssp HHHHHHHTT--------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHH
T ss_pred HHHHHHHhC--------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHh
Confidence 999998874 456899999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCC-CcEEEE
Q 011884 419 RTARAGQL-GRCFTL 432 (475)
Q Consensus 419 R~~R~~~~-g~~~~~ 432 (475)
|+||.|+. +.++++
T Consensus 434 R~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 434 RILRPSKGKKEAVLY 448 (472)
T ss_dssp HSBCCCTTTCCEEEE
T ss_pred hccCCCCCCceEEEE
Confidence 99999854 455443
No 39
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.4e-36 Score=314.16 Aligned_cols=310 Identities=18% Similarity=0.210 Sum_probs=216.5
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
+|+|+|.+|+..++. ++++++++|||+|||++++.++...+... +.++||++||++|+.||+++
T Consensus 113 ~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~vlvl~P~~~L~~Q~~~~--------- 176 (510)
T 2oca_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMADD--------- 176 (510)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC---SSEEEEEESSHHHHHHHHHH---------
T ss_pred CCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC---CCeEEEEECcHHHHHHHHHH---------
Confidence 799999999887765 68999999999999999988887766532 34899999999999996554
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
+..+....+..+..++|+...... +.
T Consensus 177 ------------------------------~~~~~~~~~~~v~~~~~~~~~~~~------------------------~~ 202 (510)
T 2oca_A 177 ------------------------------FVDYRLFSHAMIKKIGGGASKDDK------------------------YK 202 (510)
T ss_dssp ------------------------------HHHTTSSCGGGEEECGGGCCTTGG------------------------GC
T ss_pred ------------------------------HHHhhcCCccceEEEecCCccccc------------------------cc
Confidence 444444445677777777543322 22
Q ss_pred cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhh
Q 011884 165 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 244 (475)
Q Consensus 165 ~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (475)
.+++|+|+||+.+... ....+.++++||+||+|++.... ...++..+..
T Consensus 203 ~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~~~----~~~il~~~~~----------------------- 251 (510)
T 2oca_A 203 NDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATGKS----ISSIISGLNN----------------------- 251 (510)
T ss_dssp TTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCHHH----HHHHGGGCTT-----------------------
T ss_pred cCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCccc----HHHHHHhccc-----------------------
Confidence 3569999999976432 22456789999999999986533 2233332211
Q ss_pred hccccccCCCCCCccchheeeeceeeccCcccccc-ccccCceeeecCccc----------------cCCch--------
Q 011884 245 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LDLHHPLFLTTGETR----------------YKLPE-------- 299 (475)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~-~~~~~~~~~~~~~~~----------------~~~~~-------- 299 (475)
..+.+++|||+++....... ..+..+......... ...+.
T Consensus 252 ---------------~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 316 (510)
T 2oca_A 252 ---------------CMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKG 316 (510)
T ss_dssp ---------------CCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTT
T ss_pred ---------------CcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccc
Confidence 22568889999765433111 111122221111100 00000
Q ss_pred -hhhh-hhhhccCCCcHHHHHHHHHhc---CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHH
Q 011884 300 -RLES-YKLICESKLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 374 (475)
Q Consensus 300 -~~~~-~~~~~~~~~~~~~l~~~l~~~---~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~ 374 (475)
.... .........+...+.+.+... .+.+++||++ ...++.+++.|.+.+ ..+..+||+|+..+|+++++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~---~~v~~~~g~~~~~~r~~i~~~ 392 (510)
T 2oca_A 317 KTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEY---DKVYYVSGEVDTETRNIMKTL 392 (510)
T ss_dssp CCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTC---SSEEEESSSTTHHHHHHHHHH
T ss_pred cchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcC---CCeEEEECCCCHHHHHHHHHH
Confidence 0111 111222223444455555543 3445555555 999999999999865 589999999999999999999
Q ss_pred HHcCCeEEEEEc-CCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEee
Q 011884 375 FREGKIQVLVSS-DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 434 (475)
Q Consensus 375 f~~g~~~iLv~t-~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 434 (475)
|++|+.+|||+| +++++|+|+|+++.||++++|.|+..|.|++||+||.|+.+.++.+++
T Consensus 393 f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 393 AENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred HhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999 999999999999999999999999999999999999997764555544
No 40
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.1e-35 Score=310.47 Aligned_cols=368 Identities=18% Similarity=0.183 Sum_probs=242.8
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+|| .|++.|..++..++. |+ +.+|+||+|||++|.+|++.... .+..|+|++||+.||.|
T Consensus 80 lG~-~pt~VQ~~~ip~ll~----G~--Iaea~TGeGKTlaf~LP~~l~aL----~g~~vlVltptreLA~q--------- 139 (844)
T 1tf5_A 80 TGM-FPFKVQLMGGVALHD----GN--IAEMKTGEGKTLTSTLPVYLNAL----TGKGVHVVTVNEYLASR--------- 139 (844)
T ss_dssp HSC-CCCHHHHHHHHHHHT----TS--EEECCTTSCHHHHHHHHHHHHHT----TSSCEEEEESSHHHHHH---------
T ss_pred cCC-CCcHHHHHhhHHHhC----CC--EEEccCCcHHHHHHHHHHHHHHH----cCCCEEEEeCCHHHHHH---------
Confidence 488 999999998776554 66 99999999999999999884432 24579999999999999
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
..+.+..+..++++++.+++|+.+.....
T Consensus 140 ------------------------------d~e~~~~l~~~lgl~v~~i~gg~~~~~r~--------------------- 168 (844)
T 1tf5_A 140 ------------------------------DAEQMGKIFEFLGLTVGLNLNSMSKDEKR--------------------- 168 (844)
T ss_dssp ------------------------------HHHHHHHHHHHTTCCEEECCTTSCHHHHH---------------------
T ss_pred ------------------------------HHHHHHHHHhhcCCeEEEEeCCCCHHHHH---------------------
Confidence 56666777777899999999997643322
Q ss_pred HhhhcCCcEEEeCchHH-HHHhhcC-----CCcccCCccEEEEcchHHHH-HH---------------HHHhhHHHHHHh
Q 011884 161 QELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLCYLVVDETDRLL-RE---------------AYQAWLPTVLQL 218 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l-~~~l~~~-----~~~~~~~~~~lVvDE~H~l~-~~---------------~~~~~i~~i~~~ 218 (475)
...+++|+|+||+.| ++++..+ ....+..+.++|+||||+++ +. ++...+..++..
T Consensus 169 --~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~ 246 (844)
T 1tf5_A 169 --EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRT 246 (844)
T ss_dssp --HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTT
T ss_pred --HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHh
Confidence 223579999999999 5555432 13557889999999999987 54 356677777777
Q ss_pred cccc-------cccccc-----------------ccccccccccccch--------------hhhc-----------ccc
Q 011884 219 TRSD-------NENRFS-----------------DASTFLPSAFGSLK--------------TIRR-----------CGV 249 (475)
Q Consensus 219 ~~~~-------~~~~~~-----------------~~~~~~~~~~~~~~--------------~~~~-----------~~~ 249 (475)
+... ..+... .++...+....... ++-. .+.
T Consensus 247 l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~ 326 (844)
T 1tf5_A 247 LKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRL 326 (844)
T ss_dssp CCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCB
T ss_pred CcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccc
Confidence 6531 000000 11111110000000 0000 000
Q ss_pred c----------------cCCCCCC-------------c-cchheeeeceeeccCccccccccccCceeeecCccccCCch
Q 011884 250 E----------------RGFKDKP-------------Y-PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPE 299 (475)
Q Consensus 250 ~----------------~~~~~~~-------------~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (475)
- ..+.-.+ + ...+...+|+|......++...+--. ++......+....
T Consensus 327 m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~--vv~IPtn~p~~r~ 404 (844)
T 1tf5_A 327 MKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQ--VVTIPTNRPVVRD 404 (844)
T ss_dssp CTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCC--EEECCCSSCCCCE
T ss_pred cCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCc--eEEecCCCCcccc
Confidence 0 0000000 0 00124456666654433333222111 1222211111111
Q ss_pred hhhhhhhhccCCCcHHHHHHHHHh--cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHc
Q 011884 300 RLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 377 (475)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 377 (475)
. .......+...|...+...+.. ..+.++||||+|++.++.+++.|...+ +++..+||+++..+|..+..+|+.
T Consensus 405 d-~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~g---i~~~vLhg~~~~rEr~ii~~ag~~ 480 (844)
T 1tf5_A 405 D-RPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKG---IPHQVLNAKNHEREAQIIEEAGQK 480 (844)
T ss_dssp E-CCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTT---CCCEEECSSCHHHHHHHHTTTTST
T ss_pred c-CCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCC---CCEEEeeCCccHHHHHHHHHcCCC
Confidence 0 0112223444567777776654 256789999999999999999999876 889999999988777655555554
Q ss_pred CCeEEEEEcCCcccCCCCC--------CCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhH-------HHHH
Q 011884 378 GKIQVLVSSDAMTRGMDVE--------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFK 442 (475)
Q Consensus 378 g~~~iLv~t~~~~~GiDip--------~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~ 442 (475)
| .|+|||++.++|+|++ ++.+||.++.|.|...|.||+||+||.|++|.+++|++.+|. +.+.
T Consensus 481 g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~l~r~f~~~~~~ 558 (844)
T 1tf5_A 481 G--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTM 558 (844)
T ss_dssp T--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSSGGGSSHHHHHH
T ss_pred C--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHHHHHHHhHHHHH
Confidence 4 7999999999999999 788999999999999999999999999999999999876442 3355
Q ss_pred HHHHHhc
Q 011884 443 KLLQKAD 449 (475)
Q Consensus 443 ~l~~~~~ 449 (475)
.+++.+.
T Consensus 559 ~~~~~~~ 565 (844)
T 1tf5_A 559 AMLDRFG 565 (844)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 6666654
No 41
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=9.4e-35 Score=294.65 Aligned_cols=287 Identities=16% Similarity=0.159 Sum_probs=199.1
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcE-EEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDL-CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~-li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
|+.+|+|.|. + ++.+.+++++ +++||||||||++++++++..+.. .+.+++|++||++|+.|+++++..
T Consensus 1 G~~q~~~iq~-~----i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~g-- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-V----DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL---RRLRTLILAPTRVVAAEMEEALRG-- 70 (451)
T ss_dssp CCCCCSCCCC-C----CGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTTT--
T ss_pred CCCCCCCcHH-H----HHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh---cCCcEEEECCCHHHHHHHHHHhcC--
Confidence 7889999984 3 4444456554 999999999999999998876654 346899999999999997665422
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
..+....+....
T Consensus 71 -------------------------------------------~~v~~~~~~~~~------------------------- 82 (451)
T 2jlq_A 71 -------------------------------------------LPIRYQTPAVKS------------------------- 82 (451)
T ss_dssp -------------------------------------------SCEEECCTTCSC-------------------------
T ss_pred -------------------------------------------ceeeeeeccccc-------------------------
Confidence 111111111000
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
....+..|.++|++.+...+.+. ..+.++++||+||||++ +.........+......
T Consensus 83 -~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~------------------- 139 (451)
T 2jlq_A 83 -DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM------------------- 139 (451)
T ss_dssp -CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT-------------------
T ss_pred -cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC-------------------
Confidence 01123479999999987776543 45778999999999976 22222222222211100
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHH
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 320 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (475)
+..+.+++|||++........ ..+....... ..+.. . ... +...
T Consensus 140 ------------------~~~~~i~~SAT~~~~~~~~~~---~~~~~~~~~~---~~p~~--~------~~~----~~~~ 183 (451)
T 2jlq_A 140 ------------------GEAAAIFMTATPPGSTDPFPQ---SNSPIEDIER---EIPER--S------WNT----GFDW 183 (451)
T ss_dssp ------------------TSCEEEEECSSCTTCCCSSCC---CSSCEEEEEC---CCCSS--C------CSS----SCHH
T ss_pred ------------------CCceEEEEccCCCccchhhhc---CCCceEecCc---cCCch--h------hHH----HHHH
Confidence 123789999999775544322 2222222211 11100 0 001 1222
Q ss_pred HHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcE
Q 011884 321 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 400 (475)
Q Consensus 321 l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~ 400 (475)
+.+ .++++||||+++..++.+++.|++.+ ..+..+||.+. +++++.|++|+.+|||||+++++|+|+|+ ++
T Consensus 184 l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g---~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~ 254 (451)
T 2jlq_A 184 ITD-YQGKTVWFVPSIKAGNDIANCLRKSG---KRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GR 254 (451)
T ss_dssp HHH-CCSCEEEECSSHHHHHHHHHHHHTTT---CCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SE
T ss_pred HHh-CCCCEEEEcCCHHHHHHHHHHHHHcC---CeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CE
Confidence 333 35699999999999999999999765 88889998764 57899999999999999999999999999 99
Q ss_pred EEEec--------------------CCCCHHHHHHHhhhccccCC-CCcEEEEee
Q 011884 401 VVNYD--------------------KPAYIKTYIHRAGRTARAGQ-LGRCFTLLH 434 (475)
Q Consensus 401 Vv~~~--------------------~~~s~~~~~Q~~GR~~R~~~-~g~~~~~~~ 434 (475)
||.++ .|.|...|+||+||+||.|. .|.+++++.
T Consensus 255 VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 255 VIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp EEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred EEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 99888 89999999999999999997 778877763
No 42
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.2e-35 Score=299.85 Aligned_cols=281 Identities=14% Similarity=0.125 Sum_probs=184.9
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhh
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQ 99 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (475)
.+.++++++++||||||||++|+++++..+... +.+++|++||++|+.|+++.++++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~---~~~~lil~Ptr~La~Q~~~~l~~~-------------------- 60 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR---RLRTLVLAPTRVVLSEMKEAFHGL-------------------- 60 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTTTS--------------------
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc---CCeEEEEcchHHHHHHHHHHHhcC--------------------
Confidence 456789999999999999999999988876543 458999999999999977665332
Q ss_pred ccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHH
Q 011884 100 FDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 179 (475)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~ 179 (475)
.+....+.. -.++||+.+.+
T Consensus 61 -------------------------~v~~~~~~~-----------------------------------~~v~Tp~~l~~ 80 (440)
T 1yks_A 61 -------------------------DVKFHTQAF-----------------------------------SAHGSGREVID 80 (440)
T ss_dssp -------------------------CEEEESSCC-----------------------------------CCCCCSSCCEE
T ss_pred -------------------------CeEEecccc-----------------------------------eeccCCcccee
Confidence 111111100 02444443322
Q ss_pred Hhhc-------CCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhhhccccccC
Q 011884 180 HINA-------TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 252 (475)
Q Consensus 180 ~l~~-------~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (475)
.+.. .....+.+++++|+||+|++ +..+......+......
T Consensus 81 ~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~------------------------------- 128 (440)
T 1yks_A 81 AMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARA------------------------------- 128 (440)
T ss_dssp EEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHT-------------------------------
T ss_pred eecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhcc-------------------------------
Confidence 2111 11234678999999999997 33222222222221110
Q ss_pred CCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHHHHhcCCCeEEEE
Q 011884 253 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 332 (475)
Q Consensus 253 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf 332 (475)
...+.+++|||+++....+.... .+... ... ......... +...+.+ .++++|||
T Consensus 129 ------~~~~~l~~SAT~~~~~~~~~~~~--~~~~~-~~~--------------~~~~~~~~~-~~~~l~~-~~~~~lVF 183 (440)
T 1yks_A 129 ------NESATILMTATPPGTSDEFPHSN--GEIED-VQT--------------DIPSEPWNT-GHDWILA-DKRPTAWF 183 (440)
T ss_dssp ------TSCEEEEECSSCTTCCCSSCCCS--SCEEE-EEC--------------CCCSSCCSS-SCHHHHH-CCSCEEEE
T ss_pred ------CCceEEEEeCCCCchhhhhhhcC--CCeeE-eee--------------ccChHHHHH-HHHHHHh-cCCCEEEE
Confidence 12378999999988766554421 11110 000 001111111 1122222 26799999
Q ss_pred cCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEE---------
Q 011884 333 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN--------- 403 (475)
Q Consensus 333 ~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~--------- 403 (475)
|++++.++.+++.|++.+ .++..+|| .+|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 184 ~~s~~~a~~l~~~L~~~~---~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~ 255 (440)
T 1yks_A 184 LPSIRAANVMAASLRKAG---KSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVL 255 (440)
T ss_dssp CSCHHHHHHHHHHHHHTT---CCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEE
T ss_pred eCCHHHHHHHHHHHHHcC---CCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeee
Confidence 999999999999999875 88999999 3577999999999999999999999999999 999885
Q ss_pred ----------ecCCCCHHHHHHHhhhcccc-CCCCcEEEEe---echhHHHHHHHHHHh
Q 011884 404 ----------YDKPAYIKTYIHRAGRTARA-GQLGRCFTLL---HKDEVKRFKKLLQKA 448 (475)
Q Consensus 404 ----------~~~~~s~~~~~Q~~GR~~R~-~~~g~~~~~~---~~~~~~~~~~l~~~~ 448 (475)
++.|.+..+|.||+||+||. ++.|.|++++ +..+...++.+....
T Consensus 256 ~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 256 VDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp ETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred cccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 78899999999999999997 6789999996 566666666665544
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.4e-34 Score=302.15 Aligned_cols=300 Identities=14% Similarity=0.101 Sum_probs=213.5
Q ss_pred CcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccc
Q 011884 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 83 (475)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 83 (475)
..+.|.|..+ ++.+.++++++++||||||||++|+++++..+.. .+.++||++||++|+.|+++.++..
T Consensus 170 ~~~lpiq~~~----i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~---~~~~vLvl~PtreLa~Qi~~~l~~~---- 238 (618)
T 2whx_A 170 RIGEPDYEVD----EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK---RRLRTLILAPTRVVAAEMEEALRGL---- 238 (618)
T ss_dssp CCCCCCCCCC----GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTTTS----
T ss_pred ccCCCccccC----HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh---CCCeEEEEcChHHHHHHHHHHhcCC----
Confidence 4567887664 6666779999999999999999999999887765 3568999999999999976654321
Q ss_pred cccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhh
Q 011884 84 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 163 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (475)
.+. +.+... .. ..
T Consensus 239 -----------------------------------------~v~-~~~~~l--~~-----------------------~~ 251 (618)
T 2whx_A 239 -----------------------------------------PIR-YQTPAV--KS-----------------------DH 251 (618)
T ss_dssp -----------------------------------------CEE-ECCTTS--SC-----------------------CC
T ss_pred -----------------------------------------cee-Eecccc--ee-----------------------cc
Confidence 111 111000 00 00
Q ss_pred hcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchh
Q 011884 164 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 243 (475)
Q Consensus 164 ~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (475)
..+..+.++|.+.+...+... ..+.++++||+||||++ +.++...+..+...+..
T Consensus 252 tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~---------------------- 306 (618)
T 2whx_A 252 TGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM---------------------- 306 (618)
T ss_dssp CSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHH----------------------
T ss_pred CCCceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcc----------------------
Confidence 112357778888876655542 35788999999999997 55566666666655421
Q ss_pred hhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHHHHh
Q 011884 244 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 323 (475)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 323 (475)
+..+.+++|||++.....+.. .++..+..... .+. .+...+...+.+
T Consensus 307 ---------------~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~---~~~------------~~~~~ll~~l~~ 353 (618)
T 2whx_A 307 ---------------GEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE---IPE------------RSWNTGFDWITD 353 (618)
T ss_dssp ---------------TSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC---CCS------------SCCSSSCHHHHH
T ss_pred ---------------cCccEEEEECCCchhhhhhhc---cCCceeeeccc---CCH------------HHHHHHHHHHHh
Confidence 123789999999877655444 12222221111 000 011112222333
Q ss_pred cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEE--
Q 011884 324 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV-- 401 (475)
Q Consensus 324 ~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~V-- 401 (475)
.++++||||+|+..++.+++.|++.+ .++..+||. +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 354 -~~~~~LVF~~s~~~a~~l~~~L~~~g---~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId 424 (618)
T 2whx_A 354 -YQGKTVWFVPSIKAGNDIANCLRKSG---KRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVID 424 (618)
T ss_dssp -CCSCEEEECSSHHHHHHHHHHHHHTT---CCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEE
T ss_pred -CCCCEEEEECChhHHHHHHHHHHHcC---CcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEE
Confidence 36799999999999999999999876 889999984 688899999999999999999999999998 8887
Q ss_pred ------------------EEecCCCCHHHHHHHhhhccccCC-CCcEEEEee---chhHHHHHHHHHHh
Q 011884 402 ------------------VNYDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLH---KDEVKRFKKLLQKA 448 (475)
Q Consensus 402 ------------------v~~~~~~s~~~~~Q~~GR~~R~~~-~g~~~~~~~---~~~~~~~~~l~~~~ 448 (475)
+.++.|.+..+|+||+||+||.|. .|.+++++. .++...++.+++..
T Consensus 425 ~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 425 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred CcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 666778999999999999999964 889999986 66666666655543
No 44
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=5.6e-34 Score=296.70 Aligned_cols=342 Identities=17% Similarity=0.150 Sum_probs=213.9
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 81 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 81 (475)
|. .|++.|..++..++ .|+ +.+++||+|||++|.+|++.... .+..++|++||+.||.|
T Consensus 72 g~-~p~~VQ~~~i~~ll----~G~--Iaem~TGsGKTlaf~LP~l~~~l----~g~~vlVltPTreLA~Q---------- 130 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLN----ERC--IAEMRTGEGKTLTATLPAYLNAL----TGKGVHVVTVNDYLAQR---------- 130 (853)
T ss_dssp SC-CCCHHHHHHHHHHH----SSE--EEECCTTSCHHHHHHHHHHHHHT----TSSCCEEEESSHHHHHH----------
T ss_pred CC-CCChHHHhhccccc----CCe--eeeecCCchHHHHHHHHHHHHHH----cCCcEEEEcCCHHHHHH----------
Confidence 44 79999999876554 466 99999999999999999985443 24579999999999999
Q ss_pred cccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHH
Q 011884 82 KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (475)
..+.+..+..++++++.+++|+.+....
T Consensus 131 -----------------------------~~e~~~~l~~~lgl~v~~i~GG~~~~~r----------------------- 158 (853)
T 2fsf_A 131 -----------------------------DAENNRPLFEFLGLTVGINLPGMPAPAK----------------------- 158 (853)
T ss_dssp -----------------------------HHHHHHHHHHHTTCCEEECCTTCCHHHH-----------------------
T ss_pred -----------------------------HHHHHHHHHHhcCCeEEEEeCCCCHHHH-----------------------
Confidence 5566667777789999999999764322
Q ss_pred hhhcCCcEEEeCchHH-HHHhhcCC-----CcccCCccEEEEcchHHHH-HH---------------HHHhhHHHHHHhc
Q 011884 162 ELQSAVDILVATPGRL-MDHINATR-----GFTLEHLCYLVVDETDRLL-RE---------------AYQAWLPTVLQLT 219 (475)
Q Consensus 162 ~~~~~~~Iii~Tp~~l-~~~l~~~~-----~~~~~~~~~lVvDE~H~l~-~~---------------~~~~~i~~i~~~~ 219 (475)
.+..+++|+|+||+.| +++++.+. ...+.++.++|+||||+++ +. ++...+..++..+
T Consensus 159 ~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L 238 (853)
T 2fsf_A 159 REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHL 238 (853)
T ss_dssp HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC------------------
T ss_pred HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhc
Confidence 2223579999999999 77776532 2456889999999999987 32 2445566666555
Q ss_pred ccccc-----------------ccccc----cccccccccccchhhhccccccCCCCCCccchheeeeceeeccCccccc
Q 011884 220 RSDNE-----------------NRFSD----ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 278 (475)
Q Consensus 220 ~~~~~-----------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~ 278 (475)
..... .+... .......++. ..++ . .-...++|+|.+.-...+.
T Consensus 239 ~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~------~~~l----~-----~~~~~Lfsat~~~~~~~i~ 303 (853)
T 2fsf_A 239 IRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLV------KEGI----M-----DEGESLYSPANIMLMHHVT 303 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhccccccccccccceeccccceEEEcHHHHHHHHHHHH------hCCc----c-----cccccccCcccchHHHHHH
Confidence 42100 00000 0000000000 0000 0 0000134444321100000
Q ss_pred -----cc---------------------------------ccc-------------------------------------
Q 011884 279 -----QL---------------------------------DLH------------------------------------- 283 (475)
Q Consensus 279 -----~~---------------------------------~~~------------------------------------- 283 (475)
.. ++.
T Consensus 304 ~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmT 383 (853)
T 2fsf_A 304 AALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMT 383 (853)
T ss_dssp -----------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCC
Confidence 00 000
Q ss_pred --------------CceeeecCccccCCchhhhhhhhhccCCCcHHHHHHHHHh--cCCCeEEEEcCChHHHHHHHHHHh
Q 011884 284 --------------HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLN 347 (475)
Q Consensus 284 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~s~~~~~~l~~~l~ 347 (475)
...++.+....+..... .......+...|...+.+.+.. ..+.++||||+|++.++.+++.|+
T Consensus 384 GTa~te~~ef~~iY~l~vv~IPtn~p~~R~d-~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~ 462 (853)
T 2fsf_A 384 GTADTEAFEFSSIYKLDTVVVPTNRPMIRKD-LPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELT 462 (853)
T ss_dssp CTTCCCHHHHHHHHCCEEEECCCSSCCCCEE-CCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHhCCcEEEcCCCCCceeec-CCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHH
Confidence 00000000000000000 0001223344567777777754 356799999999999999999999
Q ss_pred hcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCC-----------------------------
Q 011884 348 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV----------------------------- 398 (475)
Q Consensus 348 ~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~----------------------------- 398 (475)
..+ +++..+||+++..++..+..+|+.| .|+|||++.++|+||+..
T Consensus 463 ~~g---i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (853)
T 2fsf_A 463 KAG---IKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRH 537 (853)
T ss_dssp HTT---CCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHH
T ss_pred HCC---CCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhh
Confidence 877 8899999999888887777888877 699999999999999963
Q ss_pred --------cEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechh
Q 011884 399 --------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 437 (475)
Q Consensus 399 --------~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 437 (475)
.+||.++.|.|...|.|++||+||.|++|.+++|++.+|
T Consensus 538 ~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 538 DAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 589999999999999999999999999999999987654
No 45
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=2.7e-33 Score=291.81 Aligned_cols=382 Identities=17% Similarity=0.153 Sum_probs=253.3
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+|+ .|++.|..++..++ .|+ +.+++||+|||+++.+|++..... +..|+|++||+.||.|
T Consensus 108 lG~-rP~~VQ~~~ip~Ll----~G~--Iaem~TGeGKTLa~~LP~~l~aL~----g~~v~VvTpTreLA~Q--------- 167 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALH----LGN--VAEMKTGEGKTLTCVLPAYLNALA----GNGVHIVTVNDYLAKR--------- 167 (922)
T ss_dssp HSC-CCCHHHHHHHHHHH----TTE--EEECCTTSCHHHHTHHHHHHHHTT----TSCEEEEESSHHHHHH---------
T ss_pred cCC-CCCHHHHHHHHhHh----cCC--EEEecCCCccHHHHHHHHHHHHHh----CCCeEEEeCCHHHHHH---------
Confidence 377 89999999877554 366 999999999999999999754433 3469999999999999
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
..+.+..+..++++++++++|+.+.....
T Consensus 168 ------------------------------dae~m~~l~~~lGLsv~~i~gg~~~~~r~--------------------- 196 (922)
T 1nkt_A 168 ------------------------------DSEWMGRVHRFLGLQVGVILATMTPDERR--------------------- 196 (922)
T ss_dssp ------------------------------HHHHHHHHHHHTTCCEEECCTTCCHHHHH---------------------
T ss_pred ------------------------------HHHHHHHHHhhcCCeEEEEeCCCCHHHHH---------------------
Confidence 56667777778899999999987643321
Q ss_pred HhhhcCCcEEEeCchHH-HHHhhcCC-----CcccCCccEEEEcchHHHH-H---------------HHHHhhHHHHHHh
Q 011884 161 QELQSAVDILVATPGRL-MDHINATR-----GFTLEHLCYLVVDETDRLL-R---------------EAYQAWLPTVLQL 218 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l-~~~l~~~~-----~~~~~~~~~lVvDE~H~l~-~---------------~~~~~~i~~i~~~ 218 (475)
...+++|+|+||..| ++++...- ...+..+.++|+||||+++ + .++...+..++..
T Consensus 197 --~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~ 274 (922)
T 1nkt_A 197 --VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPL 274 (922)
T ss_dssp --HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHH
T ss_pred --HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHh
Confidence 223579999999998 67665432 3556789999999999998 3 3577788888888
Q ss_pred cccc-------cccccc-----------------ccccccccccccc--------------hhhhcccc----c------
Q 011884 219 TRSD-------NENRFS-----------------DASTFLPSAFGSL--------------KTIRRCGV----E------ 250 (475)
Q Consensus 219 ~~~~-------~~~~~~-----------------~~~~~~~~~~~~~--------------~~~~~~~~----~------ 250 (475)
+... ..+... .++...+...... .++-..+. .
T Consensus 275 L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~ 354 (922)
T 1nkt_A 275 MEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRV 354 (922)
T ss_dssp SCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCB
T ss_pred CcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcc
Confidence 7521 000000 1111111000000 00000000 0
Q ss_pred -----------------cCCCC------------C-Cc-cchheeeeceeeccCccccccccccCceeeecCccccCCch
Q 011884 251 -----------------RGFKD------------K-PY-PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPE 299 (475)
Q Consensus 251 -----------------~~~~~------------~-~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (475)
.++.- + ++ ...+..++|+|......++...+ ...++......+....
T Consensus 355 m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY--~l~vv~IPtn~p~~R~ 432 (922)
T 1nkt_A 355 LIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIY--KLGVVSIPTNMPMIRE 432 (922)
T ss_dssp CTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHH--CCEEEECCCSSCCCCE
T ss_pred cCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHh--CCCeEEeCCCCCcccc
Confidence 00000 0 00 01135566777654433333322 1222233222222211
Q ss_pred hhhhhhhhccCCCcHHHHHHHHHh--cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHc
Q 011884 300 RLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 377 (475)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 377 (475)
.. ......+...|...+...+.. ..+.++||||+|++.++.+++.|+..+ +++..+||+++..++..+...|+.
T Consensus 433 d~-~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~G---i~~~vLnak~~~rEa~iia~agr~ 508 (922)
T 1nkt_A 433 DQ-SDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRR---IPHNVLNAKYHEQEATIIAVAGRR 508 (922)
T ss_dssp EC-CCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTT---CCCEEECSSCHHHHHHHHHTTTST
T ss_pred cC-CcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCC---CCEEEecCChhHHHHHHHHhcCCC
Confidence 11 112233444577777776654 256799999999999999999999877 889999999877777666677776
Q ss_pred CCeEEEEEcCCcccCCCCCCC----------------------------------------------------cEEEEec
Q 011884 378 GKIQVLVSSDAMTRGMDVEGV----------------------------------------------------NNVVNYD 405 (475)
Q Consensus 378 g~~~iLv~t~~~~~GiDip~~----------------------------------------------------~~Vv~~~ 405 (475)
| .|+|||++.++|+||+.. .+||.++
T Consensus 509 G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te 586 (922)
T 1nkt_A 509 G--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTE 586 (922)
T ss_dssp T--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECS
T ss_pred C--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEecc
Confidence 6 799999999999999964 4899999
Q ss_pred CCCCHHHHHHHhhhccccCCCCcEEEEeechhH-------HHHHHHHHHhcCCCCCccCCChhhhhh
Q 011884 406 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKADNDSCPIHSIPSSLIES 465 (475)
Q Consensus 406 ~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~ 465 (475)
.|.|...|.|++||+||.|.+|.+++|++.+|. +.+..+.+.+.... -.++.+.++..
T Consensus 587 ~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~~~~~~~~~~~~~~~~--~~~i~~~~~~~ 651 (922)
T 1nkt_A 587 RHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGAALETLLTRLNLPD--DVPIEAKMVTR 651 (922)
T ss_dssp CCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTTHHHHHHHHHHTTCCT--TSCCCCHHHHH
T ss_pred CCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhhhHHHHHHHHHhCCCC--CcccccHHHHH
Confidence 999999999999999999999999999876543 33566666665322 13555555443
No 46
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=9.2e-34 Score=297.87 Aligned_cols=308 Identities=17% Similarity=0.129 Sum_probs=180.6
Q ss_pred cccchhhhhhhhhcCCCCCC-CcEEEECCCCCchhHHhHHHHHHHHhhhh-----ccccceEEEcccHHHHHHHh-hhhh
Q 011884 5 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLPTRDLALQVN-SARC 77 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~-~~~li~a~tGsGKT~~~~~~~~~~l~~~~-----~~~~~vlil~Pt~~L~~q~~-~~~~ 77 (475)
.|+++|.+|++.++..+.++ +++++++|||+|||++++..+...+.... .++.++||++||++|+.|++ ++++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 69999999999888766666 56999999999999997665544443320 14568999999999999976 5544
Q ss_pred cccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCch
Q 011884 78 KYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 157 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (475)
.+ +..+..+.++.
T Consensus 258 ~~-------------------------------------------~~~~~~~~~~~------------------------ 270 (590)
T 3h1t_A 258 PF-------------------------------------------GDARHKIEGGK------------------------ 270 (590)
T ss_dssp TT-------------------------------------------CSSEEECCC--------------------------
T ss_pred hc-------------------------------------------chhhhhhhccC------------------------
Confidence 33 11222222211
Q ss_pred hHHHhhhcCCcEEEeCchHHHHHhhcC---CCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccc
Q 011884 158 DVLQELQSAVDILVATPGRLMDHINAT---RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 234 (475)
Q Consensus 158 ~~~~~~~~~~~Iii~Tp~~l~~~l~~~---~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 234 (475)
...+.+|+|+||+++....... ..+....+++||+||||++..... ..+..++..+..
T Consensus 271 -----~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~-~~~~~il~~~~~------------- 331 (590)
T 3h1t_A 271 -----VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDN-SNWREILEYFEP------------- 331 (590)
T ss_dssp -----CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHSTT-------------
T ss_pred -----CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccch-HHHHHHHHhCCc-------------
Confidence 1234689999999998765421 124456789999999999865321 223444443321
Q ss_pred ccccccchhhhccccccCCCCCCccchheeeeceeeccCcccccccc------------------ccCceeeecCcccc-
Q 011884 235 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD------------------LHHPLFLTTGETRY- 295 (475)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~------------------~~~~~~~~~~~~~~- 295 (475)
.+.+++|||+........... +..+..........
T Consensus 332 --------------------------~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 385 (590)
T 3h1t_A 332 --------------------------AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDA 385 (590)
T ss_dssp --------------------------SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC
T ss_pred --------------------------ceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeec
Confidence 146788888764322110000 00010100000000
Q ss_pred ---CC--------chhhhhhhh-------hccCCCcHHH----HHHHHHh-cCCCeEEEEcCChHHHHHHHHHHhhcCC-
Q 011884 296 ---KL--------PERLESYKL-------ICESKLKPLY----LVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGE- 351 (475)
Q Consensus 296 ---~~--------~~~~~~~~~-------~~~~~~~~~~----l~~~l~~-~~~~~~lvf~~s~~~~~~l~~~l~~~~~- 351 (475)
.. ...+..... ......+... +.+.+.. ...+++||||+++.+|+.+++.|.+...
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~ 465 (590)
T 3h1t_A 386 AGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSD 465 (590)
T ss_dssp -----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHH
T ss_pred cccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhh
Confidence 00 000000000 0000011122 2233333 2457999999999999999999987642
Q ss_pred ----CceeeEEeccccCHHHHHHHHHHHHcCCeE---EEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccC
Q 011884 352 ----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQ---VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 424 (475)
Q Consensus 352 ----~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~---iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~ 424 (475)
....+..+||.++. +|++++++|++|+.+ ||++|+++++|+|+|++++||+++++.|+..|.|++||++|.+
T Consensus 466 ~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~ 544 (590)
T 3h1t_A 466 LSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLR 544 (590)
T ss_dssp HHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCB
T ss_pred hhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccC
Confidence 12236788998754 799999999998766 8899999999999999999999999999999999999999987
Q ss_pred C
Q 011884 425 Q 425 (475)
Q Consensus 425 ~ 425 (475)
.
T Consensus 545 ~ 545 (590)
T 3h1t_A 545 E 545 (590)
T ss_dssp G
T ss_pred c
Confidence 4
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=3.1e-34 Score=301.41 Aligned_cols=301 Identities=14% Similarity=0.141 Sum_probs=198.4
Q ss_pred cccchhh-----hhhhhhc--CCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhh
Q 011884 5 SLFPVQV-----AVWQETI--GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARC 77 (475)
Q Consensus 5 ~~~~~Q~-----~a~~~~~--~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~ 77 (475)
.|++.|. +++..++ ..+.++++++++||||||||++|+++++..+... +.+++|++||++|+.|+++.++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~---~~~~lilaPTr~La~Q~~~~l~ 291 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK---RLRTAVLAPTRVVAAEMAEALR 291 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---CCcEEEEccHHHHHHHHHHHHh
Confidence 8999999 6654443 1222789999999999999999999998876543 4689999999999999776654
Q ss_pred cccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCch
Q 011884 78 KYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 157 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (475)
++ ++. ...+... .
T Consensus 292 ~~-------------------------------------------~i~--~~~~~l~---~------------------- 304 (673)
T 2wv9_A 292 GL-------------------------------------------PVR--YLTPAVQ---R------------------- 304 (673)
T ss_dssp TS-------------------------------------------CCE--ECCC------C-------------------
T ss_pred cC-------------------------------------------Cee--eeccccc---c-------------------
Confidence 32 110 0000000 0
Q ss_pred hHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccc
Q 011884 158 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 158 ~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
....+.-+-+.+...+...+.. ...+.++++||+||+|++. ..+......+......
T Consensus 305 ----v~tp~~ll~~l~~~~l~~~l~~--~~~l~~l~lvViDEaH~~~-~~~~~~~~~l~~~~~~---------------- 361 (673)
T 2wv9_A 305 ----EHSGNEIVDVMCHATLTHRLMS--PLRVPNYNLFVMDEAHFTD-PASIAARGYIATRVEA---------------- 361 (673)
T ss_dssp ----CCCSCCCEEEEEHHHHHHHHHS--SSCCCCCSEEEEESTTCCC-HHHHHHHHHHHHHHHT----------------
T ss_pred ----cCCHHHHHHHHHhhhhHHHHhc--ccccccceEEEEeCCcccC-ccHHHHHHHHHHhccc----------------
Confidence 0000112344444444333332 1457889999999999971 1111111222221110
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHH
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 317 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 317 (475)
...+.+++|||+++....+... ..+.. ..... . ....... +
T Consensus 362 ---------------------~~~~vl~~SAT~~~~i~~~~~~--~~~i~-~v~~~---~-----------~~~~~~~-~ 402 (673)
T 2wv9_A 362 ---------------------GEAAAIFMTATPPGTSDPFPDT--NSPVH-DVSSE---I-----------PDRAWSS-G 402 (673)
T ss_dssp ---------------------TSCEEEEECSSCTTCCCSSCCC--SSCEE-EEECC---C-----------CSSCCSS-C
T ss_pred ---------------------cCCcEEEEcCCCChhhhhhccc--CCceE-EEeee---c-----------CHHHHHH-H
Confidence 1237899999998776554432 11111 11000 0 0011111 1
Q ss_pred HHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCC
Q 011884 318 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 397 (475)
Q Consensus 318 ~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~ 397 (475)
...+.+ .++++||||++++.++.+++.|++.+ .++..+||. +|.++++.|++|+.+|||||+++++|+|+|
T Consensus 403 l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g---~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip- 473 (673)
T 2wv9_A 403 FEWITD-YAGKTVWFVASVKMSNEIAQCLQRAG---KRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG- 473 (673)
T ss_dssp CHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTT---CCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-
T ss_pred HHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCC---CeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-
Confidence 122222 47799999999999999999999865 889999993 688999999999999999999999999999
Q ss_pred CcEEEE--------------------ecCCCCHHHHHHHhhhcccc-CCCCcEEEEe---echhHHHHHHHHH
Q 011884 398 VNNVVN--------------------YDKPAYIKTYIHRAGRTARA-GQLGRCFTLL---HKDEVKRFKKLLQ 446 (475)
Q Consensus 398 ~~~Vv~--------------------~~~~~s~~~~~Q~~GR~~R~-~~~g~~~~~~---~~~~~~~~~~l~~ 446 (475)
++.||+ ++.|.+...|.||+||+||. ++.|.|++++ +..+...++.+..
T Consensus 474 v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~ 546 (673)
T 2wv9_A 474 ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEA 546 (673)
T ss_dssp CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHH
T ss_pred CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHH
Confidence 999987 45789999999999999998 7889999995 4555544444433
No 48
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=7.9e-33 Score=280.95 Aligned_cols=271 Identities=17% Similarity=0.218 Sum_probs=186.8
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhh
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQ 99 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (475)
.+.++++++++||||||||++|+++++..+... +.++||++||++|+.|+++.++.
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~---~~~~lvl~Ptr~La~Q~~~~l~g--------------------- 72 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ---RLRTAVLAPTRVVAAEMAEALRG--------------------- 72 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT---TCCEEEEECSHHHHHHHHHHTTT---------------------
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEEECchHHHHHHHHHHhcC---------------------
Confidence 445679999999999999999999998877543 45899999999999997665421
Q ss_pred ccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHH
Q 011884 100 FDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 179 (475)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~ 179 (475)
..+....+.... .-..+..+.+.|.+.+..
T Consensus 73 ------------------------~~v~~~~~~~~~--------------------------~~t~~~~i~~~~~~~l~~ 102 (459)
T 2z83_A 73 ------------------------LPVRYQTSAVQR--------------------------EHQGNEIVDVMCHATLTH 102 (459)
T ss_dssp ------------------------SCEEECC----------------------------------CCCSEEEEEHHHHHH
T ss_pred ------------------------ceEeEEeccccc--------------------------CCCCCcEEEEEchHHHHH
Confidence 111111111000 001123577888888766
Q ss_pred HhhcCCCcccCCccEEEEcchHH-----HHHHHHHhhHHHHHHhccccccccccccccccccccccchhhhccccccCCC
Q 011884 180 HINATRGFTLEHLCYLVVDETDR-----LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 254 (475)
Q Consensus 180 ~l~~~~~~~~~~~~~lVvDE~H~-----l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (475)
.+... ..+.++++||+||||+ ....++. ..+...
T Consensus 103 ~l~~~--~~l~~~~~iViDEaH~~~~~~~~~~~~~---~~~~~~------------------------------------ 141 (459)
T 2z83_A 103 RLMSP--NRVPNYNLFVMDEAHFTDPASIAARGYI---ATKVEL------------------------------------ 141 (459)
T ss_dssp HHHSC--C-CCCCSEEEESSTTCCSHHHHHHHHHH---HHHHHT------------------------------------
T ss_pred Hhhcc--ccccCCcEEEEECCccCCchhhHHHHHH---HHHhcc------------------------------------
Confidence 55542 4578899999999997 3333221 111110
Q ss_pred CCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHHHHhcCCCeEEEEcC
Q 011884 255 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 334 (475)
Q Consensus 255 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~ 334 (475)
+..+.+++|||++.....+... ..+...... ..+. ...... ...+... ++++||||+
T Consensus 142 ----~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~----~~~~--------~~~~~~----~~~l~~~-~~~~LVF~~ 198 (459)
T 2z83_A 142 ----GEAAAIFMTATPPGTTDPFPDS--NAPIHDLQD----EIPD--------RAWSSG----YEWITEY-AGKTVWFVA 198 (459)
T ss_dssp ----TSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC----CCCS--------SCCSSC----CHHHHHC-CSCEEEECS
T ss_pred ----CCccEEEEEcCCCcchhhhccC--CCCeEEecc----cCCc--------chhHHH----HHHHHhc-CCCEEEEeC
Confidence 1337899999998766554332 223221110 0000 000111 1223333 679999999
Q ss_pred ChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEE-----------
Q 011884 335 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----------- 403 (475)
Q Consensus 335 s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~----------- 403 (475)
++..++.+++.|+..+ ..+..+||. +|.++++.|++|+.+|||||+++++|+|+|+ +.||.
T Consensus 199 s~~~~~~l~~~L~~~g---~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~ 270 (459)
T 2z83_A 199 SVKMGNEIAMCLQRAG---KKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILE 270 (459)
T ss_dssp CHHHHHHHHHHHHHTT---CCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEEC
T ss_pred ChHHHHHHHHHHHhcC---CcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccc
Confidence 9999999999999875 888999984 5778999999999999999999999999999 99998
Q ss_pred ---------ecCCCCHHHHHHHhhhccccCC-CCcEEEEeech
Q 011884 404 ---------YDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLHKD 436 (475)
Q Consensus 404 ---------~~~~~s~~~~~Q~~GR~~R~~~-~g~~~~~~~~~ 436 (475)
++.|.|..+|+||+||+||.|. .|.+++++...
T Consensus 271 ~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 271 EGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp SSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 5699999999999999999987 89999998653
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.3e-33 Score=289.43 Aligned_cols=272 Identities=18% Similarity=0.259 Sum_probs=190.1
Q ss_pred hcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHH
Q 011884 17 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEM 96 (475)
Q Consensus 17 ~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (475)
++..+..+++++++||||||||+++.+++++ ++.+++|++|||+|+.|+++.+.+.
T Consensus 225 i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------~g~~vLVl~PTReLA~Qia~~l~~~----------------- 280 (666)
T 3o8b_A 225 PPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------QGYKVLVLNPSVAATLGFGAYMSKA----------------- 280 (666)
T ss_dssp CCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------CCCeEEEEcchHHHHHHHHHHHHHH-----------------
Confidence 4666667899999999999999998887765 2447999999999999965442221
Q ss_pred hhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchH
Q 011884 97 CVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 176 (475)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~ 176 (475)
.+..+...+|+.. ...+++|+|+||++
T Consensus 281 -------------------------~g~~vg~~vG~~~----------------------------~~~~~~IlV~TPGr 307 (666)
T 3o8b_A 281 -------------------------HGIDPNIRTGVRT----------------------------ITTGAPVTYSTYGK 307 (666)
T ss_dssp -------------------------HSCCCEEECSSCE----------------------------ECCCCSEEEEEHHH
T ss_pred -------------------------hCCCeeEEECcEe----------------------------ccCCCCEEEECcHH
Confidence 1334445555532 12356999999999
Q ss_pred HHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhhhccccccCCCCC
Q 011884 177 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 256 (475)
Q Consensus 177 l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (475)
|+ .. ..+.+.++++||+||+|.+ +.++...+..+++.+.....
T Consensus 308 Ll---~~-~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~-------------------------------- 350 (666)
T 3o8b_A 308 FL---AD-GGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGA-------------------------------- 350 (666)
T ss_dssp HH---HT-TSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTC--------------------------------
T ss_pred HH---hC-CCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCC--------------------------------
Confidence 84 33 3466788999999999876 45566666667666543111
Q ss_pred CccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHHHHhcCCCeEEEEcCCh
Q 011884 257 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 336 (475)
Q Consensus 257 ~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~s~ 336 (475)
...+++|||++..... ..+......... ...+... ..... ++...++++||||+++
T Consensus 351 ----~llil~SAT~~~~i~~------~~p~i~~v~~~~---~~~i~~~----~~~~~-------l~~~~~~~vLVFv~Tr 406 (666)
T 3o8b_A 351 ----RLVVLATATPPGSVTV------PHPNIEEVALSN---TGEIPFY----GKAIP-------IEAIRGGRHLIFCHSK 406 (666)
T ss_dssp ----SEEEEEESSCTTCCCC------CCTTEEEEECBS---CSSEEET----TEEEC-------GGGSSSSEEEEECSCH
T ss_pred ----ceEEEECCCCCccccc------CCcceEEEeecc---cchhHHH----Hhhhh-------hhhccCCcEEEEeCCH
Confidence 0246679999874321 111111100000 0000000 00000 1233578999999999
Q ss_pred HHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEE----------ec-
Q 011884 337 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----------YD- 405 (475)
Q Consensus 337 ~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~----------~~- 405 (475)
+.++.+++.|++.+ +++..+||+|++.+ |.++..+|||||+++++|||+| +++||+ ++
T Consensus 407 ~~ae~la~~L~~~g---~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDy 475 (666)
T 3o8b_A 407 KKCDELAAKLSGLG---INAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSL 475 (666)
T ss_dssp HHHHHHHHHHHTTT---CCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCC
T ss_pred HHHHHHHHHHHhCC---CcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccc
Confidence 99999999999865 89999999998864 4456679999999999999998 999884 44
Q ss_pred ----------CCCCHHHHHHHhhhccccCCCCcEEEEeechhHH
Q 011884 406 ----------KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 439 (475)
Q Consensus 406 ----------~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 439 (475)
.|.+...|+||+||+|| ++.|. +.++...+..
T Consensus 476 dP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 476 DPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp SSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred ccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 78999999999999999 87888 8888765543
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.5e-32 Score=275.09 Aligned_cols=269 Identities=13% Similarity=0.116 Sum_probs=182.3
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhcccc
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSL 103 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (475)
+++++++||||||||+++++++++.+... +.+++|++||++|+.|+++.++
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~---g~~~lvl~Pt~~La~Q~~~~~~-------------------------- 52 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKK---RLRTVILAPTRVVASEMYEALR-------------------------- 52 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTT--------------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhC---CCCEEEECcHHHHHHHHHHHhC--------------------------
Confidence 68899999999999999988888665443 4589999999999999655432
Q ss_pred ccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHHHhhc
Q 011884 104 LFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 183 (475)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~ 183 (475)
+..+...+|+.... ...+..+.+.|.+.+...+..
T Consensus 53 -------------------~~~v~~~~~~~~~~--------------------------~~~~~~~~~~~~~~l~~~l~~ 87 (431)
T 2v6i_A 53 -------------------GEPIRYMTPAVQSE--------------------------RTGNEIVDFMCHSTFTMKLLQ 87 (431)
T ss_dssp -------------------TSCEEEC-----------------------------------CCCSEEEEEHHHHHHHHHH
T ss_pred -------------------CCeEEEEecCcccc--------------------------CCCCceEEEEchHHHHHHHhc
Confidence 23333333331100 011235677788877655544
Q ss_pred CCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhhhccccccCCCCCCccchhe
Q 011884 184 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 263 (475)
Q Consensus 184 ~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (475)
...+.++++||+||+|++ ...+......+...... +..+.
T Consensus 88 --~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~-------------------------------------~~~~~ 127 (431)
T 2v6i_A 88 --GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSM-------------------------------------GDAGA 127 (431)
T ss_dssp --TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHT-------------------------------------TSCEE
T ss_pred --CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhC-------------------------------------CCCcE
Confidence 245778999999999997 32222222233222111 12378
Q ss_pred eeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHH
Q 011884 264 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 343 (475)
Q Consensus 264 i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~ 343 (475)
+++|||+++....+... ..+. ...... . +..+...+.+.+.+. ++++||||++++.++.++
T Consensus 128 l~~SAT~~~~~~~~~~~--~~~i-~~~~~~---~------------~~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~ 188 (431)
T 2v6i_A 128 IFMTATPPGTTEAFPPS--NSPI-IDEETR---I------------PDKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIG 188 (431)
T ss_dssp EEEESSCTTCCCSSCCC--SSCC-EEEECC---C------------CSSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHH
T ss_pred EEEeCCCCcchhhhcCC--CCce-eecccc---C------------CHHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHH
Confidence 99999998765544432 1111 111000 0 001111122333433 679999999999999999
Q ss_pred HHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcE-----------------EEEecC
Q 011884 344 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN-----------------VVNYDK 406 (475)
Q Consensus 344 ~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~-----------------Vv~~~~ 406 (475)
+.|++.+ ..+..+||+ +|+++++.|++|+.+|||||+++++|+|+| +.. |+.++.
T Consensus 189 ~~L~~~~---~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~ 260 (431)
T 2v6i_A 189 TCLQKAG---KKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPI 260 (431)
T ss_dssp HHHHHTT---CCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEE
T ss_pred HHHHHcC---CeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccc
Confidence 9999875 889999986 577899999999999999999999999999 544 567788
Q ss_pred CCCHHHHHHHhhhccccCCCCcEEEEe
Q 011884 407 PAYIKTYIHRAGRTARAGQLGRCFTLL 433 (475)
Q Consensus 407 ~~s~~~~~Q~~GR~~R~~~~g~~~~~~ 433 (475)
|.+..+|.||+||+||.|..+.+++++
T Consensus 261 p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 261 AITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred cCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 899999999999999998544444444
No 51
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.6e-32 Score=292.04 Aligned_cols=316 Identities=17% Similarity=0.237 Sum_probs=212.0
Q ss_pred CcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhh-hhccccceEEEcccHHHHHHHhhhhhccccc
Q 011884 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQVNSARCKYCCK 82 (475)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~-~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 82 (475)
..|.+.|.+++..++. .+++++++||||||||+ +++++..... ....+.++++++|+++|+.|+++.+.+
T Consensus 92 ~lP~~~q~~~i~~~l~---~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~---- 162 (773)
T 2xau_A 92 ELPVHAQRDEFLKLYQ---NNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAE---- 162 (773)
T ss_dssp TSGGGGGHHHHHHHHH---HCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHH----
T ss_pred cCChHHHHHHHHHHHh---CCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHH----
Confidence 3578889888766654 56889999999999998 3444321111 111245699999999999996543211
Q ss_pred ccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHh
Q 011884 83 NIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 162 (475)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (475)
.+ +..+...+|....... .
T Consensus 163 ----------------------------------~~----~~~v~~~vG~~i~~~~-----------------------~ 181 (773)
T 2xau_A 163 ----------------------------------EM----DVKLGEEVGYSIRFEN-----------------------K 181 (773)
T ss_dssp ----------------------------------HT----TCCBTTTEEEEETTEE-----------------------E
T ss_pred ----------------------------------Hh----CCchhheecceecccc-----------------------c
Confidence 11 1122222221100000 0
Q ss_pred hhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHH-HHH-HHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 163 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 163 ~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~-l~~-~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
...+++|+++||+++.+.+... ..+.++++||+||+|. .++ ......+..+....
T Consensus 182 ~~~~~~I~v~T~G~l~r~l~~~--~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~--------------------- 238 (773)
T 2xau_A 182 TSNKTILKYMTDGMLLREAMED--HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR--------------------- 238 (773)
T ss_dssp CCTTCSEEEEEHHHHHHHHHHS--TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC---------------------
T ss_pred cCCCCCEEEECHHHHHHHHhhC--ccccCCCEEEecCccccccchHHHHHHHHHHHHhC---------------------
Confidence 1124689999999998876652 4578999999999996 333 22233344443321
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcH----HH
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP----LY 316 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 316 (475)
+..+.+++|||+. ...+.......+ ++....... ++...+......... ..
T Consensus 239 ------------------~~~~iIl~SAT~~--~~~l~~~~~~~~-vi~v~gr~~----pv~~~~~~~~~~~~~~~~l~~ 293 (773)
T 2xau_A 239 ------------------PDLKIIIMSATLD--AEKFQRYFNDAP-LLAVPGRTY----PVELYYTPEFQRDYLDSAIRT 293 (773)
T ss_dssp ------------------TTCEEEEEESCSC--CHHHHHHTTSCC-EEECCCCCC----CEEEECCSSCCSCHHHHHHHH
T ss_pred ------------------CCceEEEEecccc--HHHHHHHhcCCC-cccccCccc----ceEEEEecCCchhHHHHHHHH
Confidence 1236899999994 334433332223 222222111 122222222222222 22
Q ss_pred HHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhc--------CCCceeeEEeccccCHHHHHHHHHHHH-----cCCeEEE
Q 011884 317 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF--------GELRIKIKEYSGLQRQSVRSKTLKAFR-----EGKIQVL 383 (475)
Q Consensus 317 l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~--------~~~~~~~~~~~g~~~~~~r~~~~~~f~-----~g~~~iL 383 (475)
+..+.....++++|||++++..++.+++.|.+. ...+..+..+||+|+..+|.++++.|. +|+.+||
T Consensus 294 l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVl 373 (773)
T 2xau_A 294 VLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVV 373 (773)
T ss_dssp HHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEE
T ss_pred HHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEE
Confidence 333334446889999999999999999999851 224588999999999999999999999 9999999
Q ss_pred EEcCCcccCCCCCCCcEEEEecC------------------CCCHHHHHHHhhhccccCCCCcEEEEeechhH
Q 011884 384 VSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 438 (475)
Q Consensus 384 v~t~~~~~GiDip~~~~Vv~~~~------------------~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 438 (475)
|||+++++|||+|++++||.++. |.|...|.||+||+||. ..|.|+.+++..+.
T Consensus 374 VAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 374 ISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999999999999999999877 88999999999999999 59999999987665
No 52
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.5e-32 Score=299.62 Aligned_cols=122 Identities=20% Similarity=0.221 Sum_probs=111.5
Q ss_pred CCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCC--eEEEEEcC
Q 011884 310 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSD 387 (475)
Q Consensus 310 ~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~--~~iLv~t~ 387 (475)
...|...+.+++....++++||||+++..++.+++.|.+. .++.+..+||+|+..+|.++++.|++|+ .+|||+|+
T Consensus 487 ~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~--~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~ 564 (968)
T 3dmq_A 487 FDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER--EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE 564 (968)
T ss_dssp TSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT--TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC
T ss_pred ccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc
Confidence 3347788888888888899999999999999999999863 1388999999999999999999999998 99999999
Q ss_pred CcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEe
Q 011884 388 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 433 (475)
Q Consensus 388 ~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~ 433 (475)
++++|+|+|++++||++++|+++..|.|++||++|.|+.+.++++.
T Consensus 565 v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 565 IGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp CTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred hhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 9999999999999999999999999999999999999888776664
No 53
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.97 E-value=1.4e-31 Score=276.00 Aligned_cols=122 Identities=15% Similarity=0.221 Sum_probs=101.5
Q ss_pred CcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhc-CCCceeeEEeccccCHHHHHHHHHHHHcC-CeE-EEEEc
Q 011884 312 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQ-VLVSS 386 (475)
Q Consensus 312 ~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~-~~~~~~~~~~~g~~~~~~r~~~~~~f~~g-~~~-iLv~t 386 (475)
.|...+.+++.+. .+.++|||+.+...++.+++.|... + ..+..+||+++..+|.++++.|+++ ..+ +|++|
T Consensus 325 ~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~---~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st 401 (500)
T 1z63_A 325 GKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELN---TEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 401 (500)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHT---CCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEEC
T ss_pred hhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhC---CCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEec
Confidence 4556666666654 6789999999999999999999874 4 7888999999999999999999998 454 78999
Q ss_pred CCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEE--eech
Q 011884 387 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL--LHKD 436 (475)
Q Consensus 387 ~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~--~~~~ 436 (475)
.++++|+|+|+++.||++++|+|+..+.|++||++|.|+.+.+.++ +..+
T Consensus 402 ~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 402 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred ccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 9999999999999999999999999999999999999987776443 4444
No 54
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=9.1e-31 Score=274.31 Aligned_cols=286 Identities=15% Similarity=0.137 Sum_probs=193.3
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccc
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDS 102 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (475)
++++++++||||||||+.+ +..+... ...+|++||++||.|+++++
T Consensus 154 ~rk~vlv~apTGSGKT~~a----l~~l~~~----~~gl~l~PtR~LA~Qi~~~l-------------------------- 199 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHA----IQKYFSA----KSGVYCGPLKLLAHEIFEKS-------------------------- 199 (677)
T ss_dssp CCEEEEEECCTTSSHHHHH----HHHHHHS----SSEEEEESSHHHHHHHHHHH--------------------------
T ss_pred CCCEEEEEcCCCCCHHHHH----HHHHHhc----CCeEEEeCHHHHHHHHHHHH--------------------------
Confidence 5789999999999999833 3333322 24699999999999965543
Q ss_pred cccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhhcCCcEEEeCchHHHHHhh
Q 011884 103 LLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 182 (475)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~ 182 (475)
... +..+...+|+...... .-.+..+++++|++.+.
T Consensus 200 -------------~~~----g~~v~lltG~~~~iv~-----------------------TpGr~~~il~~T~e~~~---- 235 (677)
T 3rc3_A 200 -------------NAA----GVPCDLVTGEERVTVQ-----------------------PNGKQASHVSCTVEMCS---- 235 (677)
T ss_dssp -------------HHT----TCCEEEECSSCEECCS-----------------------TTCCCCSEEEEEGGGCC----
T ss_pred -------------Hhc----CCcEEEEECCeeEEec-----------------------CCCcccceeEecHhHhh----
Confidence 322 5677788887543100 00112578888876541
Q ss_pred cCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccccchhhhccccccCCCCCCccchh
Q 011884 183 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 262 (475)
Q Consensus 183 ~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (475)
....++++|+||+|++.+.+++..+..++..+.. ...+
T Consensus 236 -----l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~-------------------------------------~~i~ 273 (677)
T 3rc3_A 236 -----VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA-------------------------------------EEVH 273 (677)
T ss_dssp -----SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE-------------------------------------EEEE
T ss_pred -----hcccCCEEEEecceecCCccchHHHHHHHHccCc-------------------------------------cceE
Confidence 2356899999999999777777667766665432 1336
Q ss_pred eeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHH
Q 011884 263 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 342 (475)
Q Consensus 263 ~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l 342 (475)
.+++|||.+ ....+.... .....+.... ...+.... .... ..+.... .+.+|||+++..++.+
T Consensus 274 il~~SAT~~-~i~~l~~~~-~~~~~v~~~~--r~~~l~~~--------~~~l----~~l~~~~-~g~iIf~~s~~~ie~l 336 (677)
T 3rc3_A 274 LCGEPAAID-LVMELMYTT-GEEVEVRDYK--RLTPISVL--------DHAL----ESLDNLR-PGDCIVCFSKNDIYSV 336 (677)
T ss_dssp EEECGGGHH-HHHHHHHHH-TCCEEEEECC--CSSCEEEC--------SSCC----CSGGGCC-TTEEEECSSHHHHHHH
T ss_pred EEeccchHH-HHHHHHHhc-CCceEEEEee--ecchHHHH--------HHHH----HHHHhcC-CCCEEEEcCHHHHHHH
Confidence 678888852 222222211 1111111100 00000000 0000 0111222 3457889999999999
Q ss_pred HHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHc--CCeEEEEEcCCcccCCCCCCCcEEEEecC--------------
Q 011884 343 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--GKIQVLVSSDAMTRGMDVEGVNNVVNYDK-------------- 406 (475)
Q Consensus 343 ~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~--g~~~iLv~t~~~~~GiDip~~~~Vv~~~~-------------- 406 (475)
++.|++.+ ..+..+||+|+..+|.++++.|++ |+.+|||||+++++|+|+ +++.||+++.
T Consensus 337 a~~L~~~g---~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~ 412 (677)
T 3rc3_A 337 SRQIEIRG---LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELE 412 (677)
T ss_dssp HHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------C
T ss_pred HHHHHhcC---CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccc
Confidence 99999865 899999999999999999999999 889999999999999999 7999999998
Q ss_pred CCCHHHHHHHhhhccccCCCC--cEEEEeechhHHHHHHHHHHhc
Q 011884 407 PAYIKTYIHRAGRTARAGQLG--RCFTLLHKDEVKRFKKLLQKAD 449 (475)
Q Consensus 407 ~~s~~~~~Q~~GR~~R~~~~g--~~~~~~~~~~~~~~~~l~~~~~ 449 (475)
|.|..+|.||+||+||.|.+| ..++++...+...+++++....
T Consensus 413 p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~~~ 457 (677)
T 3rc3_A 413 PITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPV 457 (677)
T ss_dssp BCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhcCc
Confidence 778999999999999998652 1333345566667777766543
No 55
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.7e-29 Score=271.57 Aligned_cols=135 Identities=21% Similarity=0.286 Sum_probs=112.8
Q ss_pred CCcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCe---EEEEE
Q 011884 311 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI---QVLVS 385 (475)
Q Consensus 311 ~~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~---~iLv~ 385 (475)
..|...+..++... .+.++|||+.....+..+.+.|...+ +.+..+||+++..+|+++++.|+++.. .+|++
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g---~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlS 631 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKG---INFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLS 631 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHT---CCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEE
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEe
Confidence 34566677777654 56799999999999999999999876 889999999999999999999998654 49999
Q ss_pred cCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEE--eech--hHHHHHHHHHHh
Q 011884 386 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL--LHKD--EVKRFKKLLQKA 448 (475)
Q Consensus 386 t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~--~~~~--~~~~~~~l~~~~ 448 (475)
|.++++|+|++.++.||++++++|+..+.|++||+.|.|+...+.++ +..+ |...+....++.
T Consensus 632 t~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 632 TRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp HHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred cccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987766554 4443 444444444443
No 56
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=2.7e-28 Score=265.83 Aligned_cols=334 Identities=16% Similarity=0.147 Sum_probs=204.7
Q ss_pred cccchhhhhhhhhcCCCC----------CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhh
Q 011884 5 SLFPVQVAVWQETIGPGL----------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNS 74 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~----------~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~ 74 (475)
.|||+|.+|+..++..+. .+++.+++++||||||+++ ++++..+... ....++||++|+++|+.|+.+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-DFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-TTCCEEEEEECGGGCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-CCCceEEEEeCcHHHHHHHHH
Confidence 599999999998876432 2468999999999999987 5555554432 233589999999999999766
Q ss_pred hhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccC
Q 011884 75 ARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 154 (475)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (475)
++.++ ... .+.++.+....
T Consensus 349 ~f~~f---------------------------------------~~~------~v~~~~s~~~l---------------- 367 (1038)
T 2w00_A 349 EYQRF---------------------------------------SPD------SVNGSENTAGL---------------- 367 (1038)
T ss_dssp HHHTT---------------------------------------STT------CSSSSCCCHHH----------------
T ss_pred HHHHh---------------------------------------ccc------ccccccCHHHH----------------
Confidence 55443 221 11222222221
Q ss_pred CchhHHHhhh-cCCcEEEeCchHHHHHhhcCCC-cccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccc
Q 011884 155 DPEDVLQELQ-SAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 232 (475)
Q Consensus 155 ~~~~~~~~~~-~~~~Iii~Tp~~l~~~l~~~~~-~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~ 232 (475)
...+. .+++|+|+||++|...+..... ..+....+||+||||+.....+ ...+...++
T Consensus 368 -----~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~~---~~~I~~~~p------------ 427 (1038)
T 2w00_A 368 -----KRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEA---QKNLKKKFK------------ 427 (1038)
T ss_dssp -----HHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHHH---HHHHHHHCS------------
T ss_pred -----HHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcchHH---HHHHHHhCC------------
Confidence 22222 3579999999999987764331 2355788999999999764332 333433322
Q ss_pred ccccccccchhhhccccccCCCCCCccchheeeeceeeccCcc-----ccc----------------cccccCceeeecC
Q 011884 233 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN-----KLA----------------QLDLHHPLFLTTG 291 (475)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~-----~~~----------------~~~~~~~~~~~~~ 291 (475)
..+.+++|||+..... ... ..+...|..+...
T Consensus 428 ---------------------------~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~ 480 (1038)
T 2w00_A 428 ---------------------------RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYN 480 (1038)
T ss_dssp ---------------------------SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEEC
T ss_pred ---------------------------cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEE
Confidence 1256888888865321 000 0011111111000
Q ss_pred ccccCC-----c---hh---hhhhhhhccCCCcHHHHHH-HHHhc-----------CCCeEEEEcCChHHHHHHHHHHhh
Q 011884 292 ETRYKL-----P---ER---LESYKLICESKLKPLYLVA-LLQSL-----------GEEKCIVFTSSVESTHRLCTLLNH 348 (475)
Q Consensus 292 ~~~~~~-----~---~~---~~~~~~~~~~~~~~~~l~~-~l~~~-----------~~~~~lvf~~s~~~~~~l~~~l~~ 348 (475)
...... . .. +...... ....+...+.. ++... .+.++||||+|+..|..+++.|.+
T Consensus 481 ~v~~~~~~~~~e~d~~~~~~i~~~~~l-~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~ 559 (1038)
T 2w00_A 481 DVRPQFKSLETETDEKKLSAAENQQAF-LHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKR 559 (1038)
T ss_dssp CCCGGGHHHHTCCCHHHHHHTCSTTTT-TCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHH
T ss_pred eccchhhhccccccHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHh
Confidence 000000 0 00 0000000 01112222222 22211 346899999999999999999987
Q ss_pred cCC---------Cceee-EEeccc----------c----------CH-----------------------------HHHH
Q 011884 349 FGE---------LRIKI-KEYSGL----------Q----------RQ-----------------------------SVRS 369 (475)
Q Consensus 349 ~~~---------~~~~~-~~~~g~----------~----------~~-----------------------------~~r~ 369 (475)
... ...++ ..+||+ + +. .+|.
T Consensus 560 ~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~ 639 (1038)
T 2w00_A 560 LQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYR 639 (1038)
T ss_dssp HHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHH
T ss_pred hhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHH
Confidence 541 12344 345542 1 21 1478
Q ss_pred HHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCC--CcEEEEeechhHHHHHHHHHH
Q 011884 370 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKKLLQK 447 (475)
Q Consensus 370 ~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~l~~~ 447 (475)
.++++|++|+.++||+|+++.+|+|+|.+ .++.++.|.+...|+|++||++|.+.. ..+.++.-.+..+.+.+-++.
T Consensus 640 ~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~~~~l~~Al~~ 718 (1038)
T 2w00_A 640 DLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLERSTIDAITL 718 (1038)
T ss_dssp HHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccccHHHHHHHHHH
Confidence 89999999999999999999999999999 577889999999999999999998743 234444434455555555555
Q ss_pred hcC
Q 011884 448 ADN 450 (475)
Q Consensus 448 ~~~ 450 (475)
+..
T Consensus 719 y~~ 721 (1038)
T 2w00_A 719 FGD 721 (1038)
T ss_dssp TSC
T ss_pred HhC
Confidence 544
No 57
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=9.9e-28 Score=253.19 Aligned_cols=121 Identities=20% Similarity=0.231 Sum_probs=104.2
Q ss_pred cHHHHHHHHHh---cCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCe---EEEEEc
Q 011884 313 KPLYLVALLQS---LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI---QVLVSS 386 (475)
Q Consensus 313 ~~~~l~~~l~~---~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~---~iLv~t 386 (475)
|...+..++.. ..+.++|||+.+...++.+...|...+ +.+..+||+++..+|.++++.|+++.. .+|++|
T Consensus 400 K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st 476 (644)
T 1z3i_X 400 KMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRR---YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 476 (644)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHT---CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCC---CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEec
Confidence 34444444443 357899999999999999999999876 889999999999999999999999865 489999
Q ss_pred CCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEE--eech
Q 011884 387 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL--LHKD 436 (475)
Q Consensus 387 ~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~--~~~~ 436 (475)
.++++|+|+++++.||++++|+|+..+.|++||++|.|+.+.+.++ +..+
T Consensus 477 ~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 477 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp GGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred ccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 9999999999999999999999999999999999999987765544 4444
No 58
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.96 E-value=7.9e-28 Score=245.65 Aligned_cols=193 Identities=15% Similarity=0.184 Sum_probs=138.7
Q ss_pred eeeeceeeccCccccccccccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHHHHhc--CCCeEEEEcCChHHHH
Q 011884 263 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTH 340 (475)
Q Consensus 263 ~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~ 340 (475)
..++|+|......++...+- ..++......+...... ......+...|...+...+... .+.++||||+|++.++
T Consensus 412 L~GMTGTa~te~~Ef~~iY~--l~vv~IPtnkp~~R~d~-~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE 488 (822)
T 3jux_A 412 LAGMTGTAKTEESEFVQVYG--MEVVVIPTHKPMIRKDH-DDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSE 488 (822)
T ss_dssp EEEEESSCGGGHHHHHHHSC--CCEEECCCSSCCCCEEC-CCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHH
T ss_pred HeEECCCCchHHHHHHHHhC--CeEEEECCCCCcceeec-CcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHH
Confidence 78889998765555544332 22333333222221111 1123334456777777777643 5789999999999999
Q ss_pred HHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCC--------CCcEEEEecCCCCHHH
Q 011884 341 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE--------GVNNVVNYDKPAYIKT 412 (475)
Q Consensus 341 ~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip--------~~~~Vv~~~~~~s~~~ 412 (475)
.+++.|.+.+ +++..+||+++..++..+..+++.| .|+|||++.++|+|++ +..+||.++.|.|...
T Consensus 489 ~Ls~~L~~~G---i~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~ 563 (822)
T 3jux_A 489 LLSSMLKKKG---IPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRI 563 (822)
T ss_dssp HHHHHHHTTT---CCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHH
T ss_pred HHHHHHHHCC---CCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHH
Confidence 9999999876 8899999997666665555566555 6999999999999998 6679999999999999
Q ss_pred HHHHhhhccccCCCCcEEEEeechh-------HHHHHHHHHHhcCCCCCccCCChhhhhh
Q 011884 413 YIHRAGRTARAGQLGRCFTLLHKDE-------VKRFKKLLQKADNDSCPIHSIPSSLIES 465 (475)
Q Consensus 413 ~~Q~~GR~~R~~~~g~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 465 (475)
|.||+||+||.|.+|.+++|++.+| -+.++.+.+++.... -.++.+.++..
T Consensus 564 y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~~--~~~i~~~~v~~ 621 (822)
T 3jux_A 564 DNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIEE--GQPIQHPMLSK 621 (822)
T ss_dssp HHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCCS--SSCBCCHHHHH
T ss_pred HHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcCCCC--CceeccHHHHH
Confidence 9999999999999999999997765 356677777775322 23455555544
No 59
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.95 E-value=2.1e-27 Score=220.87 Aligned_cols=189 Identities=30% Similarity=0.440 Sum_probs=152.4
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh----ccccceEEEcccHHHHHHHhhhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLPTRDLALQVNSAR 76 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~----~~~~~vlil~Pt~~L~~q~~~~~ 76 (475)
+||.+|+++|.+++..++ ++++++++||||||||++|++|++..+.... ..++++||++||++|+.|+++
T Consensus 47 ~g~~~~~~~Q~~~i~~~~----~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~-- 120 (242)
T 3fe2_A 47 QNFTEPTAIQAQGWPVAL----SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQ-- 120 (242)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHH--
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHH--
Confidence 589999999999987765 4899999999999999999999998876431 246689999999999999544
Q ss_pred hcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCc
Q 011884 77 CKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 156 (475)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (475)
.+..+....++++..++|+.........
T Consensus 121 -------------------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------------- 148 (242)
T 3fe2_A 121 -------------------------------------VAAEYCRACRLKSTCIYGGAPKGPQIRD--------------- 148 (242)
T ss_dssp -------------------------------------HHHHHHHHTTCCEEEECTTSCHHHHHHH---------------
T ss_pred -------------------------------------HHHHHHhhcCceEEEEECCCChHHHHHH---------------
Confidence 4555555567888999998876655443
Q ss_pred hhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccc
Q 011884 157 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 236 (475)
Q Consensus 157 ~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~ 236 (475)
+..+++|+|+||+++.+++.... ..+.+++++|+||||++.+.++...+..+++.+..
T Consensus 149 ------~~~~~~I~v~Tp~~l~~~l~~~~-~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~--------------- 206 (242)
T 3fe2_A 149 ------LERGVEICIATPGRLIDFLECGK-TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP--------------- 206 (242)
T ss_dssp ------HHHCCSEEEECHHHHHHHHHHTS-CCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCS---------------
T ss_pred ------hcCCCCEEEECHHHHHHHHHcCC-CCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCc---------------
Confidence 33457999999999999887644 66889999999999999988888888888766532
Q ss_pred ccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCc
Q 011884 237 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 292 (475)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 292 (475)
..+.+++|||+++....+....+.+|..+....
T Consensus 207 -----------------------~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 207 -----------------------DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp -----------------------SCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred -----------------------cceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 237899999999988888888888887766543
No 60
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=217.01 Aligned_cols=187 Identities=33% Similarity=0.534 Sum_probs=150.4
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||..|+++|.+++..++. +++++++||||+|||++|+++++..+... .++.++||++||++|+.|+++
T Consensus 61 ~g~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~-~~~~~~lil~Ptr~L~~q~~~------ 129 (249)
T 3ber_A 61 LGWTKPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLET-PQRLFALVLTPTRELAFQISE------ 129 (249)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHS-CCSSCEEEECSSHHHHHHHHH------
T ss_pred cCCCCCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcC-CCCceEEEEeCCHHHHHHHHH------
Confidence 6899999999999887664 79999999999999999999999887654 245689999999999999544
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.++.+....++++..++|+........
T Consensus 130 ---------------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~-------------------- 156 (249)
T 3ber_A 130 ---------------------------------QFEALGSSIGVQSAVIVGGIDSMSQSL-------------------- 156 (249)
T ss_dssp ---------------------------------HHHHHHGGGTCCEEEECTTSCHHHHHH--------------------
T ss_pred ---------------------------------HHHHHhccCCeeEEEEECCCChHHHHH--------------------
Confidence 445555556788888898876544432
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
.+..+++|+|+||+++.+.+.......+.+++++|+||||++.+.++...+..++..+..
T Consensus 157 -~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~------------------- 216 (249)
T 3ber_A 157 -ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR------------------- 216 (249)
T ss_dssp -HHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCS-------------------
T ss_pred -HhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCC-------------------
Confidence 233467999999999999887655567889999999999999888888888888765532
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeec
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 290 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 290 (475)
..+.+++|||++.....+....+.+|..+..
T Consensus 217 -------------------~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 217 -------------------DRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp -------------------SSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred -------------------CCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 2367999999999888888888888876543
No 61
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.94 E-value=7.8e-27 Score=219.47 Aligned_cols=184 Identities=33% Similarity=0.522 Sum_probs=148.8
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh---ccccceEEEcccHHHHHHHhhhhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVNSARC 77 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~---~~~~~vlil~Pt~~L~~q~~~~~~ 77 (475)
+||.+|+++|.+++..++. +++++++||||||||++|+++++..+.... ..+.++||++||++|+.|+
T Consensus 72 ~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~----- 142 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQT----- 142 (262)
T ss_dssp TTCCBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHH-----
T ss_pred CCCCCCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHH-----
Confidence 5899999999999877665 789999999999999999999998876521 2456899999999999994
Q ss_pred cccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCch
Q 011884 78 KYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 157 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (475)
.+.++.+....+..+...+|+.........
T Consensus 143 ----------------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------- 172 (262)
T 3ly5_A 143 ----------------------------------FGVLKELMTHHVHTYGLIMGGSNRSAEAQK---------------- 172 (262)
T ss_dssp ----------------------------------HHHHHHHTTTCCSCEEEECSSSCHHHHHHH----------------
T ss_pred ----------------------------------HHHHHHHHhhcCceEEEEECCCCHHHHHHH----------------
Confidence 445566666667888889998776555432
Q ss_pred hHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccc
Q 011884 158 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 158 ~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
+..+++|+|+||+++.+++.......+.+++++|+||||++.+.++...+..++..+..
T Consensus 173 -----~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~---------------- 231 (262)
T 3ly5_A 173 -----LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT---------------- 231 (262)
T ss_dssp -----HHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCS----------------
T ss_pred -----hcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCC----------------
Confidence 33457999999999999887766567889999999999999988888888888877643
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCce
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 286 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 286 (475)
..+.+++|||+++....+....++.+.
T Consensus 232 ----------------------~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 232 ----------------------RRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp ----------------------SSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred ----------------------CCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 237899999999988888877776543
No 62
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.94 E-value=1.1e-25 Score=237.50 Aligned_cols=111 Identities=21% Similarity=0.295 Sum_probs=103.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEe
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 404 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~ 404 (475)
.+.++||||+|+..++.+++.|.+.+ +++..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~g---i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~ 514 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHG---IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAIL 514 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEET
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcC---CCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEe
Confidence 57799999999999999999999876 788999999999999999999999999999999999999999999999999
Q ss_pred cC-----CCCHHHHHHHhhhccccCCCCcEEEEeechhHH
Q 011884 405 DK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 439 (475)
Q Consensus 405 ~~-----~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 439 (475)
+. |.|...|+||+||+||.+ .|.++++++..+..
T Consensus 515 d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~ 553 (664)
T 1c4o_A 515 DADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEA 553 (664)
T ss_dssp TTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHH
T ss_pred CCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHH
Confidence 97 889999999999999986 89999998775443
No 63
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.94 E-value=2.4e-26 Score=212.91 Aligned_cols=188 Identities=29% Similarity=0.470 Sum_probs=148.4
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh---ccccceEEEcccHHHHHHHhhhhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVNSARC 77 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~---~~~~~vlil~Pt~~L~~q~~~~~~ 77 (475)
+||..|+++|.+++..++. ++++++++|||+|||++|+++++..+.... ..+.++||++||++|+.|++
T Consensus 43 ~~~~~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~---- 114 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTF---- 114 (236)
T ss_dssp TTCCBCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHH----
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHH----
Confidence 5899999999999877654 799999999999999999999988775421 24668999999999999954
Q ss_pred cccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCch
Q 011884 78 KYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 157 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (475)
+.+..+....++++..++|+.........+
T Consensus 115 -----------------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------- 144 (236)
T 2pl3_A 115 -----------------------------------EVLRKVGKNHDFSAGLIIGGKDLKHEAERI--------------- 144 (236)
T ss_dssp -----------------------------------HHHHHHTTTSSCCEEEECCC--CHHHHHHH---------------
T ss_pred -----------------------------------HHHHHHhCCCCeeEEEEECCCCHHHHHHhC---------------
Confidence 445555556678888889887655443221
Q ss_pred hHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccc
Q 011884 158 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 237 (475)
Q Consensus 158 ~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (475)
.+++|+|+||+++.+.+.......+.+++++|+||||++.+.++...+..++..+..
T Consensus 145 -------~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~---------------- 201 (236)
T 2pl3_A 145 -------NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK---------------- 201 (236)
T ss_dssp -------TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCT----------------
T ss_pred -------CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCC----------------
Confidence 357999999999999887655566788999999999999888887778877776532
Q ss_pred cccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecC
Q 011884 238 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 291 (475)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 291 (475)
..+.+++|||+++....+....+.+|..+...
T Consensus 202 ----------------------~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 202 ----------------------KRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp ----------------------TSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred ----------------------CCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 23679999999998888888888888766543
No 64
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=212.86 Aligned_cols=184 Identities=31% Similarity=0.468 Sum_probs=141.0
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh-----ccccceEEEcccHHHHHHHhhh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLPTRDLALQVNSA 75 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~-----~~~~~vlil~Pt~~L~~q~~~~ 75 (475)
+||.+|+++|.+++..++. +++++++||||+|||++|+++++..+.... ..++++||++||++|+.|++++
T Consensus 38 ~g~~~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 113 (228)
T 3iuy_A 38 VGILKPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAE 113 (228)
T ss_dssp HTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHH
Confidence 4899999999999877654 899999999999999999999988775321 2466899999999999996554
Q ss_pred hhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCC
Q 011884 76 RCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 155 (475)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (475)
+..+. ..+.++...+|+........
T Consensus 114 ---------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~--------------- 138 (228)
T 3iuy_A 114 ---------------------------------------CSKYS-YKGLKSICIYGGRNRNGQIE--------------- 138 (228)
T ss_dssp ---------------------------------------HHHHC-CTTCCEEEECC------CHH---------------
T ss_pred ---------------------------------------HHHhc-ccCceEEEEECCCChHHHHH---------------
Confidence 33333 23677888888765444332
Q ss_pred chhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccc
Q 011884 156 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 235 (475)
Q Consensus 156 ~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~ 235 (475)
.+..+++|+|+||+++.+++... ...+.+++++|+||||++.+.++...+..++..+..
T Consensus 139 ------~~~~~~~iiv~Tp~~l~~~~~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~-------------- 197 (228)
T 3iuy_A 139 ------DISKGVDIIIATPGRLNDLQMNN-SVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRP-------------- 197 (228)
T ss_dssp ------HHHSCCSEEEECHHHHHHHHHTT-CCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCS--------------
T ss_pred ------HhcCCCCEEEECHHHHHHHHHcC-CcCcccceEEEEECHHHHhccchHHHHHHHHHhCCc--------------
Confidence 23446799999999999988764 366889999999999999888888888888776542
Q ss_pred cccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceee
Q 011884 236 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 288 (475)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~ 288 (475)
..+.+++|||+++....+....+.+|..+
T Consensus 198 ------------------------~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 226 (228)
T 3iuy_A 198 ------------------------DRQTVMTSATWPDTVRQLALSYLKDPMIV 226 (228)
T ss_dssp ------------------------SCEEEEEESCCCHHHHHHHHTTCSSCEEE
T ss_pred ------------------------CCeEEEEEeeCCHHHHHHHHHHCCCCEEE
Confidence 23789999999998888888888887654
No 65
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.94 E-value=3.3e-26 Score=214.31 Aligned_cols=194 Identities=28% Similarity=0.445 Sum_probs=150.9
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh--------ccccceEEEcccHHHHHHH
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--------VRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~--------~~~~~vlil~Pt~~L~~q~ 72 (475)
+||..|+++|.+++..++. ++++++++|||+|||++|+++++..+.... ..++++||++||++|+.|+
T Consensus 41 ~g~~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 116 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQI 116 (253)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHH
Confidence 5899999999999887655 789999999999999999999998876432 1346899999999999995
Q ss_pred hhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCc
Q 011884 73 NSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 152 (475)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 152 (475)
++ .+..+....++.+..++|+.....+..
T Consensus 117 ~~---------------------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~------------ 145 (253)
T 1wrb_A 117 LS---------------------------------------ESQKFSLNTPLRSCVVYGGADTHSQIR------------ 145 (253)
T ss_dssp HH---------------------------------------HHHHHHTTSSCCEEEECSSSCSHHHHH------------
T ss_pred HH---------------------------------------HHHHHhccCCceEEEEECCCCHHHHHH------------
Confidence 44 445555555788888888876555433
Q ss_pred cCCchhHHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccc
Q 011884 153 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 232 (475)
Q Consensus 153 ~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~ 232 (475)
.+..+++|+|+||+++.+++.... ..+.+++++|+||||++.+.++...+..++..+.....
T Consensus 146 ---------~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~-------- 207 (253)
T 1wrb_A 146 ---------EVQMGCHLLVATPGRLVDFIEKNK-ISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSG-------- 207 (253)
T ss_dssp ---------HHSSCCSEEEECHHHHHHHHHTTS-BCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCG--------
T ss_pred ---------HhCCCCCEEEECHHHHHHHHHcCC-CChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCC--------
Confidence 233467999999999999887644 66788999999999999888888888888875432110
Q ss_pred ccccccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCcc
Q 011884 233 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 293 (475)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 293 (475)
...+.+++|||+++....+....+.++..+.....
T Consensus 208 --------------------------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 208 --------------------------INRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp --------------------------GGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred --------------------------CCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 12378999999999888888888888877665443
No 66
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=216.23 Aligned_cols=192 Identities=29% Similarity=0.505 Sum_probs=144.6
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+++|.+++..++. +++++++||||+|||++|+++++..+......+.++||++||++|+.|+++
T Consensus 47 ~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~------ 116 (245)
T 3dkp_A 47 AGFQMPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHR------ 116 (245)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHH------
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHH------
Confidence 5899999999999877655 789999999999999999999998886544456789999999999999544
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.+..+....+..+...+|+........
T Consensus 117 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 143 (245)
T 3dkp_A 117 ---------------------------------ELIKISEGTGFRIHMIHKAAVAAKKFG-------------------- 143 (245)
T ss_dssp ---------------------------------HHHHHTTTSCCCEECCCHHHHHHTTTS--------------------
T ss_pred ---------------------------------HHHHHhcccCceEEEEecCccHHHHhh--------------------
Confidence 455555555677776665533221110
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCC-CcccCCccEEEEcchHHHHHH---HHHhhHHHHHHhcccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE---AYQAWLPTVLQLTRSDNENRFSDASTFLPS 236 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~-~~~~~~~~~lVvDE~H~l~~~---~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~ 236 (475)
.....+++|+|+||+++..++.... ...+.+++++|+||||++.+. ++...+..++.....
T Consensus 144 ~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~--------------- 208 (245)
T 3dkp_A 144 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS--------------- 208 (245)
T ss_dssp TTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC---------------
T ss_pred hhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC---------------
Confidence 1123467999999999999887643 466889999999999999874 455555555543322
Q ss_pred ccccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCc
Q 011884 237 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 292 (475)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 292 (475)
+..+.+++|||+++....+....+.+|..+..+.
T Consensus 209 ----------------------~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 209 ----------------------HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp ----------------------TTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred ----------------------CCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 1236799999999999999998888888776544
No 67
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.94 E-value=2.1e-26 Score=220.63 Aligned_cols=186 Identities=20% Similarity=0.293 Sum_probs=146.2
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+++|.+|+..++.. .+++++++||||||||++|++|++..+... .+++++||++||++|+.|+++
T Consensus 110 ~g~~~pt~iQ~~ai~~il~~--~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-~~~~~~lil~PtreLa~Q~~~------ 180 (300)
T 3fmo_B 110 MGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-NKYPQCLCLSPTYELALQTGK------ 180 (300)
T ss_dssp TTCCSCCHHHHHHHHHHTSS--SCCCEEEECCTTSSHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHHHHHHHH------
T ss_pred cCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCCccHHHHHHHHHhhhcc-CCCceEEEEcCcHHHHHHHHH------
Confidence 68999999999998877652 238999999999999999999999887654 356689999999999999544
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccc-cceEeEccCCCchHHHHHHHhhccccccCccCCchhH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 159 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
.+..+.... ++.+...+|+......
T Consensus 181 ---------------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~--------------------- 206 (300)
T 3fmo_B 181 ---------------------------------VIEQMGKFYPELKLAYAVRGNKLERG--------------------- 206 (300)
T ss_dssp ---------------------------------HHHHHTTTSTTCCEEEESTTCCCCTT---------------------
T ss_pred ---------------------------------HHHHHHhhCCCcEEEEEeCCccHhhh---------------------
Confidence 444444432 5677777776543221
Q ss_pred HHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHH-HHHHhhHHHHHHhcccccccccccccccccccc
Q 011884 160 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238 (475)
Q Consensus 160 ~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~-~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
...+++|+|+||+++++++.....+.+.+++++|+||||++.+ .++...+..+...+..
T Consensus 207 ---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~----------------- 266 (300)
T 3fmo_B 207 ---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR----------------- 266 (300)
T ss_dssp ---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCT-----------------
T ss_pred ---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCC-----------------
Confidence 1235689999999999999776667789999999999999987 5777777777665432
Q ss_pred ccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeec
Q 011884 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 290 (475)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 290 (475)
..|.+++|||++.....+....+.+|..+..
T Consensus 267 ---------------------~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 267 ---------------------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp ---------------------TCEEEEEESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred ---------------------CCEEEEEeccCCHHHHHHHHHHCCCCeEEEe
Confidence 3378999999999999999999998877654
No 68
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=3.2e-26 Score=207.42 Aligned_cols=183 Identities=27% Similarity=0.473 Sum_probs=143.7
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+++|.+++..++. ++++++++|||+|||++++++++..+... ..+.++||++||++|+.|+++.
T Consensus 21 ~g~~~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~----- 90 (206)
T 1vec_A 21 MGWEKPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLK-KDNIQAMVIVPTRELALQVSQI----- 90 (206)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTT-SCSCCEEEECSCHHHHHHHHHH-----
T ss_pred CCCCCCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhccc-CCCeeEEEEeCcHHHHHHHHHH-----
Confidence 6899999999999887665 78999999999999999999998876543 3456899999999999995444
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccc-cceEeEccCCCchHHHHHHHhhccccccCccCCchhH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 159 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
+..+.... +..+...+|+........
T Consensus 91 ----------------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~------------------- 117 (206)
T 1vec_A 91 ----------------------------------CIQVSKHMGGAKVMATTGGTNLRDDIM------------------- 117 (206)
T ss_dssp ----------------------------------HHHHTTTSSSCCEEEECSSSCHHHHHH-------------------
T ss_pred ----------------------------------HHHHHhhcCCceEEEEeCCccHHHHHH-------------------
Confidence 44444444 678888888876554432
Q ss_pred HHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccc
Q 011884 160 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 239 (475)
Q Consensus 160 ~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 239 (475)
.+..+++|+|+||+++.+.+.... ..+.+++++|+||||++.+.++...+..++..+..
T Consensus 118 --~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~------------------ 176 (206)
T 1vec_A 118 --RLDDTVHVVIATPGRILDLIKKGV-AKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK------------------ 176 (206)
T ss_dssp --HTTSCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCT------------------
T ss_pred --hcCCCCCEEEeCHHHHHHHHHcCC-cCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCc------------------
Confidence 233467999999999998887633 56788999999999999877777777777766532
Q ss_pred cchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCcee
Q 011884 240 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF 287 (475)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~ 287 (475)
..+.+++|||++.....+....+.+|..
T Consensus 177 --------------------~~~~l~~SAT~~~~~~~~~~~~l~~p~~ 204 (206)
T 1vec_A 177 --------------------NRQILLYSATFPLSVQKFMNSHLEKPYE 204 (206)
T ss_dssp --------------------TCEEEEEESCCCHHHHHHHHHHCSSCEE
T ss_pred --------------------cceEEEEEeeCCHHHHHHHHHHcCCCeE
Confidence 2368999999998888888777777754
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=1.4e-25 Score=205.54 Aligned_cols=185 Identities=24% Similarity=0.363 Sum_probs=143.6
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||..|+++|.+++..++. ++++++++|||+|||++++++++..+... ..+.++||++||++|+.|++++
T Consensus 32 ~g~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~----- 101 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPV-TGQVSVLVMCHTRELAFQISKE----- 101 (220)
T ss_dssp TTCCCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCC-TTCCCEEEECSCHHHHHHHHHH-----
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhcc-CCCEEEEEEeCCHHHHHHHHHH-----
Confidence 5898999999999887765 78899999999999999999998876543 2345899999999999996554
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccc-cceEeEccCCCchHHHHHHHhhccccccCccCCchhH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 159 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
+..+.... ++++..++|+.........+..
T Consensus 102 ----------------------------------~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~--------------- 132 (220)
T 1t6n_A 102 ----------------------------------YERFSKYMPNVKVAVFFGGLSIKKDEEVLKK--------------- 132 (220)
T ss_dssp ----------------------------------HHHHTTTSTTCCEEEESCCSCHHHHHHHHHH---------------
T ss_pred ----------------------------------HHHHHhhCCCceEEEEeCCCChHHHHHHHhc---------------
Confidence 44444333 6788888988765554432221
Q ss_pred HHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHH-HHHHhhHHHHHHhcccccccccccccccccccc
Q 011884 160 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238 (475)
Q Consensus 160 ~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~-~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
..++|+|+||+++.+.+... ...+.+++++|+||||++.+ .++...+..++.....
T Consensus 133 -----~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~----------------- 189 (220)
T 1t6n_A 133 -----NCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH----------------- 189 (220)
T ss_dssp -----SCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS-----------------
T ss_pred -----CCCCEEEeCHHHHHHHHHhC-CCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCC-----------------
Confidence 24699999999999888763 36678999999999999975 5676677777655432
Q ss_pred ccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceee
Q 011884 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 288 (475)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~ 288 (475)
..+.+++|||++.....+....+.+|..+
T Consensus 190 ---------------------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 190 ---------------------EKQVMMFSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp ---------------------SSEEEEEESCCCTTTHHHHHTTCSSCEEE
T ss_pred ---------------------cCeEEEEEeecCHHHHHHHHHHcCCCeEE
Confidence 23789999999999888888888887654
No 70
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.94 E-value=2.5e-26 Score=237.62 Aligned_cols=396 Identities=14% Similarity=0.082 Sum_probs=181.9
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+|| .|||+|.+++..+...+..+++++++||||+|||+++++|++.. +.+++|++||++|+.|+++++.++.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-------~~~~~~~~~t~~l~~q~~~~~~~l~ 75 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-------KKKVLIFTRTHSQLDSIYKNAKLLG 75 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-------TCEEEEEESCHHHHHHHHHHHGGGT
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-------CCcEEEEcCCHHHHHHHHHHHHhcC
Confidence 477 89999999988887777789999999999999999999988652 3579999999999999999988852
Q ss_pred ccccccccchhhhHHHhhhccccccccc--hhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchh
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISL--PQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 158 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
+.+....++.+.|.+-........ +...+...... ..|.......+..+ ......+|+.
T Consensus 76 ----~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~---------~~gd~~~~~~~~~~------~~~~~~Cpy~ 136 (540)
T 2vl7_A 76 ----LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIK---------TIEDKEPSKLIEEF------KDAVDYCPYY 136 (540)
T ss_dssp ----CCEEEC----------------------------------------------------------------------
T ss_pred ----CcEEEecCCccccCCchhcccccccCCCCCCchhccc---------ccccCCcHHHHHHH------hhhcCCChHH
Confidence 222333445578886322211000 00000000000 00110000000000 0112345666
Q ss_pred HHHhhhcCCcEEEeCchHHHHHhhcCCC------cccCCccEEEEcchHHHHHH-----------HHHhhHHHHH-----
Q 011884 159 VLQELQSAVDILVATPGRLMDHINATRG------FTLEHLCYLVVDETDRLLRE-----------AYQAWLPTVL----- 216 (475)
Q Consensus 159 ~~~~~~~~~~Iii~Tp~~l~~~l~~~~~------~~~~~~~~lVvDE~H~l~~~-----------~~~~~i~~i~----- 216 (475)
..+....+++|+|+||..+++....... -.+...+++||||||++... ........+.
T Consensus 137 ~~r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~ 216 (540)
T 2vl7_A 137 SLRANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERL 216 (540)
T ss_dssp --CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhc
Confidence 6677778899999999999774432110 02356789999999998321 1111111111
Q ss_pred ----------------Hhccccc-cccccccccccccccc---cc----hhhh---ccc-----c---------------
Q 011884 217 ----------------QLTRSDN-ENRFSDASTFLPSAFG---SL----KTIR---RCG-----V--------------- 249 (475)
Q Consensus 217 ----------------~~~~~~~-~~~~~~~~~~~~~~~~---~~----~~~~---~~~-----~--------------- 249 (475)
..+.... ......+......... .. ..+. ... +
T Consensus 217 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 296 (540)
T 2vl7_A 217 NRIDAKKVKDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYN 296 (540)
T ss_dssp TCCCCHHHHHHHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEE
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEE
Confidence 1110000 0000000000000000 00 0000 000 0
Q ss_pred -ccCCCCCCcc-----------chheeeeceeeccCc---cccccccccCceeeecCccccCCchhhhhhhhhccCCCcH
Q 011884 250 -ERGFKDKPYP-----------RLVKMVLSATLTQDP---NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 314 (475)
Q Consensus 250 -~~~~~~~~~~-----------~~~~i~~SaT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (475)
...+.-.|.. ....|++|||+++.. ..+. .....+...........++.+..... .......
T Consensus 297 ~~~~l~~~P~~~~~~l~~~~~~~~~~IltSATL~p~~~~~~~f~-~~~~~~~g~~~~~~~~~l~s~f~~r~--~~~~~~~ 373 (540)
T 2vl7_A 297 CNGSLVKVPSDVNQLIEDALNVKTFKVLMSGTLPESLTLTNSYK-IVVNESYGRGEYYYCPNVTSELRKRN--SNIPIYS 373 (540)
T ss_dssp ETTEEEEECSCHHHHHHHHTCCSSCEEEEESSCCTTCCCTTEEE-EECCCC-CCCEEEECTTCCCCGGGHH--HHHHHHH
T ss_pred ECCeEEEehHHHHHHHHHhcCccCCeEEEcccCCCCcccchhcC-CchhheecCCcceeccccCCCccccc--CHHHHHH
Confidence 0000000110 111399999998821 1110 01111110000000001111111000 0001112
Q ss_pred HHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEE--EcCCcccC
Q 011884 315 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV--SSDAMTRG 392 (475)
Q Consensus 315 ~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv--~t~~~~~G 392 (475)
..+..++. ..++++|||++|+..++.+++.+.. . ..+.+|.. .+|.++++.|+++. .||+ +|+.+++|
T Consensus 374 ~~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~-----~-~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EG 443 (540)
T 2vl7_A 374 ILLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG-----I-PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEG 443 (540)
T ss_dssp HHHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT-----S-CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC-------
T ss_pred HHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc-----C-ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecc
Confidence 22333333 3567999999999999999988764 2 24556554 46889999999864 6776 78999999
Q ss_pred CCCCC----CcEEEEecCCCC------------------------------HHHHHHHhhhccccCCCCcEEEEeech
Q 011884 393 MDVEG----VNNVVNYDKPAY------------------------------IKTYIHRAGRTARAGQLGRCFTLLHKD 436 (475)
Q Consensus 393 iDip~----~~~Vv~~~~~~s------------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 436 (475)
||+|+ +++||+.++|.. ...+.|.+||+.|...+-.++++.|++
T Consensus 444 iD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 444 VEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp --------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred eecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 99997 788999997721 134669999999987666666666643
No 71
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.94 E-value=5.2e-26 Score=209.75 Aligned_cols=184 Identities=22% Similarity=0.345 Sum_probs=143.6
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||..|+++|.+++..++. ++++++++|||+|||++|+++++..+... ..+.++||++||++|+.|++++
T Consensus 42 ~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~----- 111 (230)
T 2oxc_A 42 AGFERPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLE-NLSTQILILAPTREIAVQIHSV----- 111 (230)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHHHHHHHHH-----
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhc-CCCceEEEEeCCHHHHHHHHHH-----
Confidence 5899999999999887654 78999999999999999999998877543 2456899999999999996554
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccc-cceEeEccCCCchHHHHHHHhhccccccCccCCchhH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 159 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
+..+.... ++++..++|+.........
T Consensus 112 ----------------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------------ 139 (230)
T 2oxc_A 112 ----------------------------------ITAIGIKMEGLECHVFIGGTPLSQDKTR------------------ 139 (230)
T ss_dssp ----------------------------------HHHHTTTSTTCCEEEECTTSCHHHHHHH------------------
T ss_pred ----------------------------------HHHHhcccCCceEEEEeCCCCHHHHHHh------------------
Confidence 44444332 6788888888765444322
Q ss_pred HHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHH-HHhhHHHHHHhcccccccccccccccccccc
Q 011884 160 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238 (475)
Q Consensus 160 ~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~-~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
..+++|+|+||+++.+++... ...+.+++++|+||||++.+.+ +...+..++..+..
T Consensus 140 ----~~~~~Iiv~Tp~~l~~~~~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~----------------- 197 (230)
T 2oxc_A 140 ----LKKCHIAVGSPGRIKQLIELD-YLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA----------------- 197 (230)
T ss_dssp ----TTSCSEEEECHHHHHHHHHTT-SSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS-----------------
T ss_pred ----ccCCCEEEECHHHHHHHHhcC-CcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC-----------------
Confidence 135799999999999988763 3667889999999999998776 77777777776532
Q ss_pred ccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeee
Q 011884 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 289 (475)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~ 289 (475)
..+.+++|||+++....+....+.+|..+.
T Consensus 198 ---------------------~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 198 ---------------------SKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp ---------------------SCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred ---------------------CCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 236799999998887777777777776553
No 72
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.93 E-value=2e-26 Score=210.87 Aligned_cols=192 Identities=22% Similarity=0.325 Sum_probs=146.1
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||.+|+++|.+++..++. ++++++++|||+|||++|+++++..+... ..+.++||++||++|+.|++++++++
T Consensus 22 ~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~- 95 (219)
T 1q0u_A 22 LRFYKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPE-RAEVQAVITAPTRELATQIYHETLKI- 95 (219)
T ss_dssp TTCCSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHHHHHHHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhC-cCCceEEEEcCcHHHHHHHHHHHHHH-
Confidence 5899999999999877654 78999999999999999999998877643 24568999999999999976654332
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
........+..+..++|+........
T Consensus 96 ----------------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~-------------------- 121 (219)
T 1q0u_A 96 ----------------------------------TKFCPKDRMIVARCLIGGTDKQKALE-------------------- 121 (219)
T ss_dssp ----------------------------------HTTSCGGGCCCEEEECCCSHHHHTTC--------------------
T ss_pred ----------------------------------hhhcccccceEEEEEeCCCCHHHHHH--------------------
Confidence 11111122577788888765433211
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
.+..+++|+|+||+++.+.+.... ..+.+++++|+||||++.+.++...+..++..+..
T Consensus 122 -~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~------------------- 180 (219)
T 1q0u_A 122 -KLNVQPHIVIGTPGRINDFIREQA-LDVHTAHILVVDEADLMLDMGFITDVDQIAARMPK------------------- 180 (219)
T ss_dssp -CCSSCCSEEEECHHHHHHHHHTTC-CCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCT-------------------
T ss_pred -HcCCCCCEEEeCHHHHHHHHHcCC-CCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCc-------------------
Confidence 123367999999999999887633 66788999999999999887777777777766532
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecCc
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 292 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 292 (475)
..+.+++|||++.+..++....+.+|..+....
T Consensus 181 -------------------~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 181 -------------------DLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp -------------------TCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred -------------------ccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 236899999999988888888888887665544
No 73
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.93 E-value=2.5e-26 Score=212.88 Aligned_cols=186 Identities=26% Similarity=0.436 Sum_probs=140.1
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||..|+++|.+++..++. ++++++++|||+|||++|+++++..+... ..+.++||++||++|+.|++
T Consensus 48 ~g~~~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~------- 115 (237)
T 3bor_A 48 YGFEKPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIE-FKETQALVLAPTRELAQQIQ------- 115 (237)
T ss_dssp HTCCSCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHHHHHHH-------
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhc-CCCceEEEEECcHHHHHHHH-------
Confidence 4898999999999887664 78999999999999999999999877543 24568999999999999954
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
+.+..+....+..+...+|+.........
T Consensus 116 --------------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------------- 144 (237)
T 3bor_A 116 --------------------------------KVILALGDYMGATCHACIGGTNVRNEMQK------------------- 144 (237)
T ss_dssp --------------------------------HHHHHHTTTTTCCEEEECC-----------------------------
T ss_pred --------------------------------HHHHHHhhhcCceEEEEECCCchHHHHHH-------------------
Confidence 44555555557778888887654433221
Q ss_pred Hhhhc-CCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhccccccccccccccccccccc
Q 011884 161 QELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 239 (475)
Q Consensus 161 ~~~~~-~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 239 (475)
+.. .++|+|+||+++.+.+... ...+.+++++|+||||++.+.++...+..+++.+..
T Consensus 145 --l~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~------------------ 203 (237)
T 3bor_A 145 --LQAEAPHIVVGTPGRVFDMLNRR-YLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT------------------ 203 (237)
T ss_dssp -----CCCSEEEECHHHHHHHHHTT-SSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCT------------------
T ss_pred --HhcCCCCEEEECHHHHHHHHHhC-CcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCC------------------
Confidence 222 3799999999999988763 356788999999999999888777777777766532
Q ss_pred cchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeec
Q 011884 240 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 290 (475)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 290 (475)
..+.+++|||+++....+....+.+|..+..
T Consensus 204 --------------------~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 204 --------------------SIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp --------------------TCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred --------------------CCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 2378999999999888888888888776543
No 74
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.93 E-value=5.4e-26 Score=208.79 Aligned_cols=186 Identities=24% Similarity=0.427 Sum_probs=141.5
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+||..|+++|.+++..++. ++++++++|||+|||++++++++..+... .++.++||++||++|+.|+
T Consensus 32 ~g~~~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-~~~~~~lil~Pt~~L~~q~-------- 98 (224)
T 1qde_A 32 YGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTS-VKAPQALMLAPTRELALQI-------- 98 (224)
T ss_dssp HTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTT-CCSCCEEEECSSHHHHHHH--------
T ss_pred CCCCCCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhcc-CCCceEEEEECCHHHHHHH--------
Confidence 4889999999999887655 78999999999999999999999877554 3456899999999999995
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
.+.+..+....++++...+|+.........
T Consensus 99 -------------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------------- 128 (224)
T 1qde_A 99 -------------------------------QKVVMALAFHMDIKVHACIGGTSFVEDAEG------------------- 128 (224)
T ss_dssp -------------------------------HHHHHHHTTTSCCCEEEECC-----------------------------
T ss_pred -------------------------------HHHHHHHhcccCceEEEEeCCcchHHHHhc-------------------
Confidence 444555555567888888888654443221
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccccc
Q 011884 161 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 240 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
..+++|+|+||+++.+.+... ...+.+++++|+||||++.+.++...+..++..+..
T Consensus 129 ---~~~~~iiv~Tp~~l~~~~~~~-~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~------------------- 185 (224)
T 1qde_A 129 ---LRDAQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP------------------- 185 (224)
T ss_dssp ---CTTCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT-------------------
T ss_pred ---CCCCCEEEECHHHHHHHHHhC-CcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCc-------------------
Confidence 123799999999999888764 366788999999999999887777777777765432
Q ss_pred chhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeeecC
Q 011884 241 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 291 (475)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 291 (475)
..+.+++|||+++....+....+.+|..+...
T Consensus 186 -------------------~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 186 -------------------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp -------------------TCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred -------------------cCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 23689999999998888888888888766543
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.93 E-value=4e-24 Score=225.41 Aligned_cols=121 Identities=25% Similarity=0.315 Sum_probs=107.4
Q ss_pred HHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCccc
Q 011884 314 PLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 391 (475)
Q Consensus 314 ~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~ 391 (475)
...+...+... .+.++||||+|+..++.+++.|.+.+ +++..+||+++..+|.++++.|++|+.+|||+|+++++
T Consensus 431 ~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g---i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~ 507 (661)
T 2d7d_A 431 IDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIG---IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507 (661)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCST
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcC---CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhC
Confidence 34443444332 56799999999999999999999876 78899999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEecC-----CCCHHHHHHHhhhccccCCCCcEEEEeechhH
Q 011884 392 GMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 438 (475)
Q Consensus 392 GiDip~~~~Vv~~~~-----~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 438 (475)
|+|+|++++||+++. |.|...|+||+||+||. ..|.++++++..+.
T Consensus 508 GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 508 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITK 558 (661)
T ss_dssp TCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCH
T ss_pred CcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCH
Confidence 999999999999997 89999999999999998 58999999887544
No 76
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.93 E-value=2e-25 Score=202.26 Aligned_cols=184 Identities=33% Similarity=0.482 Sum_probs=142.9
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh--ccccceEEEcccHHHHHHHhhhhhc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVNSARCK 78 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~--~~~~~vlil~Pt~~L~~q~~~~~~~ 78 (475)
+||..|+++|.+++..++. ++++++++|||+|||++++++++..+.... .++++++|++||++|+.|+++++
T Consensus 19 ~~~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~-- 92 (207)
T 2gxq_A 19 RGLTTPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASEL-- 92 (207)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHH--
T ss_pred cCCCCCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHH--
Confidence 5899999999999887665 789999999999999999999988775321 24568999999999999965554
Q ss_pred ccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchh
Q 011884 79 YCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 158 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
..+... .++...+|+........
T Consensus 93 -------------------------------------~~~~~~--~~~~~~~~~~~~~~~~~------------------ 115 (207)
T 2gxq_A 93 -------------------------------------TAVAPH--LKVVAVYGGTGYGKQKE------------------ 115 (207)
T ss_dssp -------------------------------------HHHCTT--SCEEEECSSSCSHHHHH------------------
T ss_pred -------------------------------------HHHhhc--ceEEEEECCCChHHHHH------------------
Confidence 443332 56777788766544432
Q ss_pred HHHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHHHHhhHHHHHHhcccccccccccccccccccc
Q 011884 159 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 238 (475)
Q Consensus 159 ~~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
.+..+++|+|+||+++.+.+.. ....+.+++++|+||||++.+.++...+..++.....
T Consensus 116 ---~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~----------------- 174 (207)
T 2gxq_A 116 ---ALLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPP----------------- 174 (207)
T ss_dssp ---HHHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCT-----------------
T ss_pred ---HhhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCc-----------------
Confidence 2234679999999999998876 3366788999999999999887777777777765432
Q ss_pred ccchhhhccccccCCCCCCccchheeeeceeeccCccccccccccCceeee
Q 011884 239 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 289 (475)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~ 289 (475)
..+.+++|||+++....+....+.+|..+.
T Consensus 175 ---------------------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 175 ---------------------SRQTLLFSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp ---------------------TSEEEEECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred ---------------------cCeEEEEEEecCHHHHHHHHHHcCCCeEEE
Confidence 236899999999888888888888877654
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=2.6e-24 Score=187.18 Aligned_cols=148 Identities=26% Similarity=0.453 Sum_probs=137.6
Q ss_pred hhhhhhhhccCCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCC
Q 011884 300 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 379 (475)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 379 (475)
.+.+.+..++...|...|.+++....++++||||+++..++.+++.|.+.+ ..+..+||+|+..+|.++++.|++|+
T Consensus 9 ~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 9 NIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLG---YPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 355566666777899999999998888899999999999999999999876 88999999999999999999999999
Q ss_pred eEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcC
Q 011884 380 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 450 (475)
Q Consensus 380 ~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~ 450 (475)
.++||+|+++++|+|+|++++||++++|.++..|.||+||+||.|+.|.+++++...+...++++.+.+..
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 156 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGF 156 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTS
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999887754
No 78
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=8.9e-24 Score=219.73 Aligned_cols=131 Identities=25% Similarity=0.288 Sum_probs=104.3
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccc
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
+|+ .|++.|..++..++ .|+ +.++.||+|||+++.+|++..... +..|+|++||+.||.|
T Consensus 76 lG~-~Pt~VQ~~~ip~Ll----qG~--IaeakTGeGKTLvf~Lp~~L~aL~----G~qv~VvTPTreLA~Q--------- 135 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLH----EGK--IAEMKTGEGKTLVATLAVALNALT----GKGVHVVTVNDYLARR--------- 135 (997)
T ss_dssp TCC-CCCHHHHHHHHHHH----TTS--EEECCSTHHHHHHHHHHHHHHHTT----CSCCEEEESSHHHHHH---------
T ss_pred hCC-CCcHHHHhhccccc----CCc--eeeccCCCchHHHHHHHHHHHHHh----CCCEEEEeCCHHHHHH---------
Confidence 588 99999999876554 466 999999999999999998654432 3469999999999999
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
..+.+..+..++++++++++|+.+....
T Consensus 136 ------------------------------dae~m~~l~~~lGLsv~~i~Gg~~~~~r---------------------- 163 (997)
T 2ipc_A 136 ------------------------------DAEWMGPVYRGLGLSVGVIQHASTPAER---------------------- 163 (997)
T ss_dssp ------------------------------HHHHHHHHHHTTTCCEEECCTTCCHHHH----------------------
T ss_pred ------------------------------HHHHHHHHHHhcCCeEEEEeCCCCHHHH----------------------
Confidence 6666777778889999999998764332
Q ss_pred HhhhcCCcEEEeCchHH-HHHhhcCC-----CcccC---CccEEEEcchHHHH
Q 011884 161 QELQSAVDILVATPGRL-MDHINATR-----GFTLE---HLCYLVVDETDRLL 204 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l-~~~l~~~~-----~~~~~---~~~~lVvDE~H~l~ 204 (475)
....+++|+|+||..+ ++++.... ...+. ++.++|+||+|+++
T Consensus 164 -~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 164 -RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp -HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred -HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 2234579999999999 77776542 24566 89999999999976
No 79
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.92 E-value=1.4e-24 Score=225.31 Aligned_cols=185 Identities=18% Similarity=0.020 Sum_probs=120.9
Q ss_pred CCCcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccc
Q 011884 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 81 (475)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 81 (475)
|| .|||+|.+++..+...+..+++++++||||+|||++|++|++. .+.+++|++||++|+.|+.+++.++..
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------~~~~v~i~~pt~~l~~q~~~~~~~l~~ 72 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------VKPKVLFVVRTHNEFYPIYRDLTKIRE 72 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------HCSEEEEEESSGGGHHHHHHHHTTCCC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------CCCeEEEEcCCHHHHHHHHHHHHHHhh
Confidence 56 7999999998888888888999999999999999999999987 245899999999999999999888754
Q ss_pred cccccccchhhhHHHhhh-ccccccccchhhHHHHHhhcccccceEeEccCCC-chHHHHHHHhhccccccCccCCchhH
Q 011884 82 KNIFGLIADHSIAEMCVQ-FDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQS-SIADEISELIKRPKLEAGICYDPEDV 159 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
...+.+..-.++.+.|.+ +.. .. +.......+..|..... .|.. ............ ......+|+..
T Consensus 73 ~~~~~~~~l~gr~~~c~~~~~~-~~-~~~~~c~~c~~~~~~~~------~g~~~~~~~~~~~~~~~---G~~~~~Cpy~~ 141 (551)
T 3crv_A 73 KRNITFSFLVGKPSSCLYAEKG-AE-SEDIPCKYCELKGSIVE------VKTDDSPLSLVKKLKKD---GLQDKFCPYYS 141 (551)
T ss_dssp SSCCCEEECCCHHHHCTTBCTT-CC-GGGCCGGGCTTTTCCCC------CCCCSCHHHHHHHHHHH---HHHHTCCHHHH
T ss_pred hcCccEEEEccccccCcCchhc-CC-CcccccCCCCCcccccc------ccccCCHHHHHHHHHHc---CCcCCcCccHH
Confidence 434455555566666875 222 11 11100001111111100 1111 111111111000 00124567888
Q ss_pred HHhhhcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHH
Q 011884 160 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 205 (475)
Q Consensus 160 ~~~~~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~ 205 (475)
.+....+++|+|+||..+++..............++||||||++.+
T Consensus 142 ar~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 142 LLNSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred HHhhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 8888889999999999998875433311224678999999999866
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=6.7e-24 Score=186.91 Aligned_cols=150 Identities=29% Similarity=0.507 Sum_probs=132.5
Q ss_pred hhhhhhhhhccCCC-cHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHc
Q 011884 299 ERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 377 (475)
Q Consensus 299 ~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 377 (475)
..+.+.+..++... |...|.+++....++++||||+++..++.+++.|.+.+ ..+..+||+|+..+|.++++.|++
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDG---HQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTT---CCEEEECSSCCHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34555555555544 88899999988888899999999999999999999765 889999999999999999999999
Q ss_pred CCeEEEEEcCCcccCCCCCCCcEEEEecCC------CCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCC
Q 011884 378 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 451 (475)
Q Consensus 378 g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 451 (475)
|+.++||+|+++++|+|+|++++||+++.| .+...|+||+||+||.|+.|.+++++...+...++++.+.+...
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 99999999999999999999999999999999999998887643
No 81
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.91 E-value=1.2e-24 Score=227.62 Aligned_cols=417 Identities=15% Similarity=0.092 Sum_probs=220.6
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
.|||+|.+.+..+.+.+.++++++++||||+|||+++++|++..+... +.+++|++||++++.|+.+++.++.....
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~---~~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER---KLKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc---CCeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 689999999998888888999999999999999999999999887653 45899999999999999999988876556
Q ss_pred ccccchhhhHHHhh-hccc-cccccc-hhhHHHHHhhccc---ccceEeEccCCCchHHHH-HH-Hhhccccc------c
Q 011884 85 FGLIADHSIAEMCV-QFDS-LLFISL-PQVKDVFAAIAPA---VGLSVGLAVGQSSIADEI-SE-LIKRPKLE------A 150 (475)
Q Consensus 85 ~~~~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~-~~~~~~~~------~ 150 (475)
+++..-.++.+.|. +-.. .+..+. ......+...... .....+-+..+.....+. .. +......+ .
T Consensus 80 ~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~~~~~ 159 (620)
T 4a15_A 80 IRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYGE 159 (620)
T ss_dssp CCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHHHHHH
T ss_pred eEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHHHHhh
Confidence 77777888888998 6431 111000 0000011111000 000000000000000000 00 00000000 1
Q ss_pred CccCCchhHHHhhhcCCcEEEeCchHHHHHhhcCCC---c-ccCCccEEEEcchHHHHHHHH------------Hhh---
Q 011884 151 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRG---F-TLEHLCYLVVDETDRLLREAY------------QAW--- 211 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~l~~~~~---~-~~~~~~~lVvDE~H~l~~~~~------------~~~--- 211 (475)
....+|+...+.....++|||+++..+++..-.... . ....-.++||||||++.+... ...
T Consensus 160 ~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~~~~~ 239 (620)
T 4a15_A 160 RNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADRE 239 (620)
T ss_dssp HTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHHHHHH
T ss_pred hcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHHHHHH
Confidence 234678889999999999999999876553321110 0 123456999999999865311 000
Q ss_pred --------------HHHHHH-----------hccccccccc------ccccc----------------------------
Q 011884 212 --------------LPTVLQ-----------LTRSDNENRF------SDAST---------------------------- 232 (475)
Q Consensus 212 --------------i~~i~~-----------~~~~~~~~~~------~~~~~---------------------------- 232 (475)
+..++. .+........ .....
T Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 319 (620)
T 4a15_A 240 AQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENEKE 319 (620)
T ss_dssp HHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHhhcc
Confidence 111110 0000000000 00000
Q ss_pred ----ccccc-------------cc--cch-h--------hhcccccc-CCCCCCccchheeeeceeeccCcccc-ccccc
Q 011884 233 ----FLPSA-------------FG--SLK-T--------IRRCGVER-GFKDKPYPRLVKMVLSATLTQDPNKL-AQLDL 282 (475)
Q Consensus 233 ----~~~~~-------------~~--~~~-~--------~~~~~~~~-~~~~~~~~~~~~i~~SaT~~~~~~~~-~~~~~ 282 (475)
..... .. .+. . +....+.. .... .+.....|++|||+.+ ...+ ..+++
T Consensus 320 ~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~-~~~~~~~il~SaTL~p-~~~~~~~lGl 397 (620)
T 4a15_A 320 KVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILE-VLKESKTIHMSGTLDP-FDFYSDITGF 397 (620)
T ss_dssp HTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHG-GGGGSEEEEEESSCCS-HHHHHHHHCC
T ss_pred ccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHH-HHhCCeEEEEccCCCc-HHHHHHHhCC
Confidence 00000 00 000 0 00000000 0000 1123346888999986 2222 22233
Q ss_pred cCceeeecCccccCCchhhhhhhhh-cc------CCC----cHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCC
Q 011884 283 HHPLFLTTGETRYKLPERLESYKLI-CE------SKL----KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 351 (475)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~----~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~ 351 (475)
. ....... .+..+......... .+ ... -...+.+++.. .+++++||++|+...+.+++.++..
T Consensus 398 ~-~~~~~~~--spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~l~~~-- 471 (620)
T 4a15_A 398 E-IPFKKIG--EIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK-VKKNTIVYFPSYSLMDRVENRVSFE-- 471 (620)
T ss_dssp C-CCEEECC--CCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHH-HCSCEEEEESCHHHHHHHTSSCCSC--
T ss_pred C-ceeeecC--CCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHHHhc--
Confidence 2 1111111 11111111100000 00 000 11223333333 3678999999999999999988721
Q ss_pred CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEc--CCcccCCCCCC--CcEEEEecCCCC------------------
Q 011884 352 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS--DAMTRGMDVEG--VNNVVNYDKPAY------------------ 409 (475)
Q Consensus 352 ~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t--~~~~~GiDip~--~~~Vv~~~~~~s------------------ 409 (475)
..+ ..-+++..++.++++.|+ ++..||+++ +.++||||+|+ ++.||+.++|..
T Consensus 472 -~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g 546 (620)
T 4a15_A 472 -HMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYG 546 (620)
T ss_dssp -CEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHS
T ss_pred -chh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhC
Confidence 122 455566678999999999 888999997 59999999997 788999887621
Q ss_pred -----------HHHHHHHhhhccccCCCCcEEEEeechh
Q 011884 410 -----------IKTYIHRAGRTARAGQLGRCFTLLHKDE 437 (475)
Q Consensus 410 -----------~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 437 (475)
...+.|.+||+.|...+-.+++++|++=
T Consensus 547 ~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~ 585 (620)
T 4a15_A 547 KGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRA 585 (620)
T ss_dssp CHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGGG
T ss_pred CCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccch
Confidence 1235699999999887766777766543
No 82
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=9.7e-24 Score=185.14 Aligned_cols=148 Identities=26% Similarity=0.389 Sum_probs=134.7
Q ss_pred hhhhhhhhccCCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCC
Q 011884 300 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 379 (475)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 379 (475)
.+.+.+..++...|...|.++++...++++||||+++..++.+++.|...+ ..+..+||+|+..+|.++++.|++|+
T Consensus 5 ~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 5 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN---FPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcC---CCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 445556666777899999999998888899999999999999999999876 88999999999999999999999999
Q ss_pred eEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeech-hHHHHHHHHHHhcC
Q 011884 380 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVKRFKKLLQKADN 450 (475)
Q Consensus 380 ~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~l~~~~~~ 450 (475)
.++||+|+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.+++++... +...++.+.+.+..
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~ 153 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 153 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCC
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999864 66778888877754
No 83
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.91 E-value=4.6e-24 Score=186.08 Aligned_cols=148 Identities=27% Similarity=0.451 Sum_probs=130.4
Q ss_pred hhhhhhhccCCC-cHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCC
Q 011884 301 LESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 379 (475)
Q Consensus 301 ~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 379 (475)
+.+.+..++... |...|.++++...++++||||+++..++.+++.|.+.+ ..+..+||+|+..+|.++++.|++|+
T Consensus 4 i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 4 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK---FTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 334444555555 89999999998888999999999999999999999866 88999999999999999999999999
Q ss_pred eEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCC
Q 011884 380 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 451 (475)
Q Consensus 380 ~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 451 (475)
.++||+|+++++|+|+|++++||++++|.++..|.||+||+||.|+.|.+++++...+...++++.+.++..
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQ 152 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999999999999999999999999998877654
No 84
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.90 E-value=7.7e-24 Score=187.95 Aligned_cols=163 Identities=29% Similarity=0.476 Sum_probs=130.3
Q ss_pred CchhhhhhhhhccCCCcHHHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHH
Q 011884 297 LPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 375 (475)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f 375 (475)
.+..+.+.+..++...|...|.+++... .++++||||+++..++.+++.|...+ +.+..+||+|+..+|.++++.|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g---~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---YACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTT---CCEEEEC--------CHHHHHH
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcC---CceEEEeCCCCHHHHHHHHHHH
Confidence 3455666667777778899999999876 57899999999999999999999866 8899999999999999999999
Q ss_pred HcCCeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCCCCCc
Q 011884 376 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 455 (475)
Q Consensus 376 ~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 455 (475)
++|+.++||+|+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.+++++...+...++++++.++...
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~--- 169 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK--- 169 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTT---
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhcc---
Confidence 99999999999999999999999999999999999999999999999999999999999999988888888876432
Q ss_pred cCCChhhhhh
Q 011884 456 HSIPSSLIES 465 (475)
Q Consensus 456 ~~~~~~~~~~ 465 (475)
.++++.+.+.
T Consensus 170 ~~~~~~l~~~ 179 (185)
T 2jgn_A 170 QEVPSWLENM 179 (185)
T ss_dssp CCCCHHHHHH
T ss_pred CCCCHHHHHH
Confidence 4566655443
No 85
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.90 E-value=2.6e-23 Score=188.74 Aligned_cols=144 Identities=30% Similarity=0.451 Sum_probs=132.5
Q ss_pred hhhccCCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEE
Q 011884 305 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 384 (475)
Q Consensus 305 ~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv 384 (475)
...+....|...+.+++....++++||||+++..++.+++.|...+ ..+..+||+|+..+|.++++.|++|+.+|||
T Consensus 10 ~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlv 86 (212)
T 3eaq_A 10 AVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDLSQGERERVLGAFRQGEVRVLV 86 (212)
T ss_dssp EEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT---CCEEEECSSSCHHHHHHHHHHHHSSSCCEEE
T ss_pred EEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHHCCCCeEEE
Confidence 3445567889999999998889999999999999999999999876 8899999999999999999999999999999
Q ss_pred EcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCC
Q 011884 385 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 451 (475)
Q Consensus 385 ~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 451 (475)
+|+++++|+|+|++++||++++|.++..|.||+||+||.|+.|.|+++++..+...++.+.+..+..
T Consensus 87 aT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 87 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp ECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred ecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999999998887653
No 86
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.90 E-value=2.1e-23 Score=185.88 Aligned_cols=174 Identities=25% Similarity=0.361 Sum_probs=132.4
Q ss_pred cccCceeeecCccccCCchhhhhhhhhccCCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEec
Q 011884 281 DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 360 (475)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~ 360 (475)
.+.+|..+...... .....+.+.+..+....|...|.+++... ++++||||+++..++.+++.|...+ +.+..+|
T Consensus 11 ~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g---~~~~~lh 85 (191)
T 2p6n_A 11 VDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKG---VEAVAIH 85 (191)
T ss_dssp ------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHT---CCEEEEC
T ss_pred ccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcC---CcEEEEe
Confidence 34445444443322 23345566666677778888999888765 5689999999999999999999876 8899999
Q ss_pred cccCHHHHHHHHHHHHcCCeEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeech-hHH
Q 011884 361 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVK 439 (475)
Q Consensus 361 g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~ 439 (475)
|+|+..+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|.++..|+||+||+||.|+.|.+++++... +..
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES 165 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999865 666
Q ss_pred HHHHHHHHhcCCCCCccCCChhh
Q 011884 440 RFKKLLQKADNDSCPIHSIPSSL 462 (475)
Q Consensus 440 ~~~~l~~~~~~~~~~~~~~~~~~ 462 (475)
.++.+.+.++... ..+|+.+
T Consensus 166 ~~~~l~~~l~~~~---~~~p~~l 185 (191)
T 2p6n_A 166 VLMDLKALLLEAK---QKVPPVL 185 (191)
T ss_dssp HHHHHHHHHHHTT---CCCCHHH
T ss_pred HHHHHHHHHHHcc---CcCCHHH
Confidence 6666666554332 3455553
No 87
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.88 E-value=2.5e-22 Score=190.99 Aligned_cols=146 Identities=29% Similarity=0.439 Sum_probs=131.0
Q ss_pred hhhhhccCCCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEE
Q 011884 303 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 382 (475)
Q Consensus 303 ~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~i 382 (475)
+....+....|...+..++....++++||||+++..++.+++.|...+ +.+..+||+|+..+|.++++.|++|+.+|
T Consensus 5 ~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g---~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 5 EEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTT---CCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred EEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 445566777899999999998889999999999999999999998765 89999999999999999999999999999
Q ss_pred EEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcCC
Q 011884 383 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 451 (475)
Q Consensus 383 Lv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 451 (475)
||||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.|+++++..+...++.+.+.....
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~ 150 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 150 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999999999999999999999998887653
No 88
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.79 E-value=6.9e-24 Score=185.87 Aligned_cols=147 Identities=31% Similarity=0.498 Sum_probs=133.4
Q ss_pred hhhhhhhccC-CCcHHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCC
Q 011884 301 LESYKLICES-KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 379 (475)
Q Consensus 301 ~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 379 (475)
+.+.+..++. ..|...|.+++....++++||||+++..++.+++.|+..+ ..+..+||+|+..+|.++++.|++|+
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAG---INNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 3445555555 7788888888887778899999999999999999998765 88999999999999999999999999
Q ss_pred eEEEEEcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEEEEeechhHHHHHHHHHHhcC
Q 011884 380 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 450 (475)
Q Consensus 380 ~~iLv~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~l~~~~~~ 450 (475)
.++||+|+++++|+|+|++++||+++.|.++..|.||+||+||.|+.|.+++++...+...++++.+.++.
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 151 (170)
Confidence 99999999999999999999999999999999999999999999999999999999998888888876654
No 89
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.82 E-value=3.2e-20 Score=168.94 Aligned_cols=141 Identities=21% Similarity=0.217 Sum_probs=95.6
Q ss_pred CcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh--ccccceEEEcccHHHHHH-Hhhhhhccc
Q 011884 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQ-VNSARCKYC 80 (475)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~--~~~~~vlil~Pt~~L~~q-~~~~~~~~~ 80 (475)
..|+++|.+++..++. ++++++.+|||+|||++++.++...+.... ..+.++||++|+++|+.| +.+.+++
T Consensus 32 ~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~-- 105 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQP-- 105 (216)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHH--
T ss_pred CCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHH--
Confidence 3799999999887764 789999999999999999998887765532 125689999999999999 5444333
Q ss_pred ccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHH
Q 011884 81 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
+... +.++..++|+........
T Consensus 106 -------------------------------------~~~~-~~~v~~~~g~~~~~~~~~-------------------- 127 (216)
T 3b6e_A 106 -------------------------------------FLKK-WYRVIGLSGDTQLKISFP-------------------- 127 (216)
T ss_dssp -------------------------------------HHTT-TSCEEECCC---CCCCHH--------------------
T ss_pred -------------------------------------Hhcc-CceEEEEeCCcccchhHH--------------------
Confidence 2222 567777777654332211
Q ss_pred HhhhcCCcEEEeCchHHHHHhhcCCC-----cccCCccEEEEcchHHHHHHHHH
Q 011884 161 QELQSAVDILVATPGRLMDHINATRG-----FTLEHLCYLVVDETDRLLREAYQ 209 (475)
Q Consensus 161 ~~~~~~~~Iii~Tp~~l~~~l~~~~~-----~~~~~~~~lVvDE~H~l~~~~~~ 209 (475)
.+..+++|+|+||+.+.+.+..... ..+.++++||+||||++.+.++.
T Consensus 128 -~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 180 (216)
T 3b6e_A 128 -EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVY 180 (216)
T ss_dssp -HHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CH
T ss_pred -hhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcH
Confidence 1122468999999999988876432 45678999999999999765433
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.75 E-value=1.2e-18 Score=165.45 Aligned_cols=128 Identities=19% Similarity=0.136 Sum_probs=92.6
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
+|+++|.+++..++. +.+.++++|||+|||.+++.++...+... +.++||++||++|+.||++++
T Consensus 113 ~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~~lil~Pt~~L~~q~~~~l-------- 177 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMADDF-------- 177 (282)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC---SSEEEEECSSHHHHHHHHHHH--------
T ss_pred CccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC---CCeEEEEECCHHHHHHHHHHH--------
Confidence 789999999887665 56788999999999999988776655432 347999999999999965554
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
.++.......+..++++..... ...
T Consensus 178 -------------------------------~~~~~~~~~~~~~~~~~~~~~~------------------------~~~ 202 (282)
T 1rif_A 178 -------------------------------VDYRLFSHAMIKKIGGGASKDD------------------------KYK 202 (282)
T ss_dssp -------------------------------HHHTSCCGGGEEECSTTCSSTT------------------------CCC
T ss_pred -------------------------------HHhcccccceEEEEeCCCcchh------------------------hhc
Confidence 4444444556666666643211 111
Q ss_pred cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHH
Q 011884 165 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 206 (475)
Q Consensus 165 ~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~ 206 (475)
..++|+|+||+.+.+. ....+.+++++|+||||++.+.
T Consensus 203 ~~~~I~v~T~~~l~~~----~~~~~~~~~~vIiDEaH~~~~~ 240 (282)
T 1rif_A 203 NDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATGK 240 (282)
T ss_dssp TTCSEEEECHHHHTTS----CGGGGGGEEEEEEETGGGCCHH
T ss_pred cCCcEEEEchHHHHhh----HHHHHhhCCEEEEECCccCCcc
Confidence 3468999999987443 2234678899999999998643
No 91
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=150.68 Aligned_cols=142 Identities=20% Similarity=0.213 Sum_probs=93.8
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh-ccccceEEEcccHHHHHHHhhhhhcccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVNSARCKYCCKN 83 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~-~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 83 (475)
.++++|.+++..+. .+++++++||||||||+++..+++......+ ..+.++++++|++.++.|+++++.+.
T Consensus 61 p~~~~q~~~i~~i~----~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~---- 132 (235)
T 3llm_A 61 PVKKFESEILEAIS----QNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFE---- 132 (235)
T ss_dssp GGGGGHHHHHHHHH----HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHT----
T ss_pred ChHHHHHHHHHHHh----cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHH----
Confidence 46888988776554 4899999999999999988888777655432 13447999999999999975554322
Q ss_pred cccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCchHHHHHHHhhccccccCccCCchhHHHhh
Q 011884 84 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 163 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (475)
+....+..++....... ...
T Consensus 133 ----------------------------------~~~~~~~~~g~~~~~~~--------------------------~~~ 152 (235)
T 3llm_A 133 ----------------------------------RGEEPGKSCGYSVRFES--------------------------ILP 152 (235)
T ss_dssp ----------------------------------TTCCTTSSEEEEETTEE--------------------------ECC
T ss_pred ----------------------------------hccccCceEEEeechhh--------------------------ccC
Confidence 11111222211110000 000
Q ss_pred hcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHH-HHHHHH-hhHHHHHHh
Q 011884 164 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-LREAYQ-AWLPTVLQL 218 (475)
Q Consensus 164 ~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l-~~~~~~-~~i~~i~~~ 218 (475)
..+++|+|+||+++.+.+.. .+.++++||+||+|+. .+.++. ..++.+...
T Consensus 153 ~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 153 RPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp CSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 12468999999999998875 3788999999999984 455544 345555543
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.70 E-value=1e-17 Score=154.50 Aligned_cols=115 Identities=27% Similarity=0.265 Sum_probs=86.2
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 84 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 84 (475)
.|+++|.+++..++. ++++++++|||+|||.+++.++... +.+++|++|+++|+.||+++++++
T Consensus 93 ~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~liv~P~~~L~~q~~~~~~~~----- 156 (237)
T 2fz4_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----- 156 (237)
T ss_dssp CCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS-------CSCEEEEESSHHHHHHHHHHHGGG-----
T ss_pred CcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHHHHHHHhC-----
Confidence 789999999887654 5679999999999999887766542 347999999999999976554331
Q ss_pred ccccchhhhHHHhhhccccccccchhhHHHHHhhcccccce-EeEccCCCchHHHHHHHhhccccccCccCCchhHHHhh
Q 011884 85 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 163 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (475)
+.. +..+.|+..
T Consensus 157 --------------------------------------~~~~v~~~~g~~~----------------------------- 169 (237)
T 2fz4_A 157 --------------------------------------GEEYVGEFSGRIK----------------------------- 169 (237)
T ss_dssp --------------------------------------CGGGEEEESSSCB-----------------------------
T ss_pred --------------------------------------CCCeEEEEeCCCC-----------------------------
Confidence 445 666666542
Q ss_pred hcCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHHHHHHH
Q 011884 164 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 207 (475)
Q Consensus 164 ~~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~l~~~~ 207 (475)
...+|+|+|++.+....... ...+++||+||+|++.+..
T Consensus 170 -~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~l~~~~ 208 (237)
T 2fz4_A 170 -ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAES 208 (237)
T ss_dssp -CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSCCCTTT
T ss_pred -CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCccCCChH
Confidence 13589999999987655431 2458999999999985433
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.65 E-value=3.9e-16 Score=146.46 Aligned_cols=124 Identities=15% Similarity=0.234 Sum_probs=95.6
Q ss_pred CCCcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhc-CCCceeeEEeccccCHHHHHHHHHHHHcC-CeE-EEE
Q 011884 310 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQ-VLV 384 (475)
Q Consensus 310 ~~~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~-~~~~~~~~~~~g~~~~~~r~~~~~~f~~g-~~~-iLv 384 (475)
...|...+.+++... .+.++|||+++...++.+.+.|... + +.+..+||+++..+|.++++.|+++ +.+ +|+
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~ 170 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELN---TEVPFLYGELSKKERDDIISKFQNNPSVKFIVL 170 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHC---SCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcC---CcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEE
Confidence 445777788877765 6789999999999999999999874 5 7888999999999999999999998 666 789
Q ss_pred EcCCcccCCCCCCCcEEEEecCCCCHHHHHHHhhhccccCCCCcEE--EEeech
Q 011884 385 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF--TLLHKD 436 (475)
Q Consensus 385 ~t~~~~~GiDip~~~~Vv~~~~~~s~~~~~Q~~GR~~R~~~~g~~~--~~~~~~ 436 (475)
+|.++++|+|+++++.||++++|+++..+.|++||++|.|+.+.+. .++..+
T Consensus 171 st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 171 SVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp ECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred ehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999999877664 345544
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.25 E-value=9.9e-07 Score=92.02 Aligned_cols=64 Identities=19% Similarity=0.170 Sum_probs=46.2
Q ss_pred cchhhhhhhhhcCCCCCCCcEEEECCCCCchhHH--hHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhh
Q 011884 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS--YALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 76 (475)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~--~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~ 76 (475)
.++|.+|+..++ .++.+++.|++|||||++ ++++++..+.. ..+.++++++||..++.++.+.+
T Consensus 151 ~~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~--~~~~~vll~APTg~AA~~L~e~~ 216 (608)
T 1w36_D 151 INWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMAD--GERCRIRLAAPTGKAAARLTESL 216 (608)
T ss_dssp CCHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTCS--SCCCCEEEEBSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh--cCCCeEEEEeCChhHHHHHHHHH
Confidence 578999887665 478999999999999954 33333332211 13458999999999999975543
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.19 E-value=1.2e-06 Score=88.30 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=52.9
Q ss_pred CCCCcccchhhhhhhhhcCCCCCCC-cEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHh
Q 011884 1 MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 73 (475)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~-~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~ 73 (475)
|.|..+++.|.+|+..++..+.+++ .++|.|+.|||||.+. ..++..+...+ ...+++++||...+..+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~--~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG--ETGIILAAPTHAAKKILS 91 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT--CCCEEEEESSHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC--CceEEEecCcHHHHHHHH
Confidence 4678899999999988776555554 8999999999999755 34555554432 236999999999887753
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.16 E-value=3.1e-06 Score=89.15 Aligned_cols=68 Identities=19% Similarity=0.162 Sum_probs=52.2
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 79 (475)
.+++.|.+|+..++. +..-.||.||+|||||.+....+.+.+ . .+.+||+++||..-+.++.+.+.+.
T Consensus 189 ~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~-~---~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAV-K---QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHH-H---TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHH-h---CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 578999999887764 344589999999999987655444443 3 2458999999999999988776544
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.06 E-value=2.2e-05 Score=82.24 Aligned_cols=69 Identities=25% Similarity=0.212 Sum_probs=52.8
Q ss_pred CcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcc
Q 011884 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 79 (475)
..+++.|.+|+..++. +...+|.||+|||||.+... ++..+... .+.++++++||...+.++.+.+.+.
T Consensus 179 ~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~-~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHH-HHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4578999999887754 56789999999999987544 33444332 3558999999999999998887654
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=3e-05 Score=83.13 Aligned_cols=69 Identities=22% Similarity=0.187 Sum_probs=52.8
Q ss_pred CcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcc
Q 011884 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 79 (475)
..+++.|.+|+..++. +.-.+|.||+|||||.+....+ ..+... .+.++++++||...+.++.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i-~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIV-YHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHH-HHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHH-HHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4578999999887654 5568999999999998765433 333332 3458999999999999998887664
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.94 E-value=5e-05 Score=81.36 Aligned_cols=69 Identities=25% Similarity=0.212 Sum_probs=52.8
Q ss_pred CcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcc
Q 011884 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 79 (475)
..+++.|.+|+..++. +.-.+|.||+|||||.+... ++..+... .+.++++++||...+.++.+.+.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~-~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHH-HHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHH-HHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 3578999999887754 56789999999999987544 44444432 3458999999999999998887654
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.76 E-value=3.3e-05 Score=79.71 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=46.3
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
.+++.|.+|+..+.. +..++|.||+|||||.+. ..++..+.. .+.++++++||...+..+
T Consensus 189 ~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i-~~l~~~l~~---~g~~Vl~~ApT~~Aa~~L 248 (574)
T 3e1s_A 189 GLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTT-KAVADLAES---LGLEVGLCAPTGKAARRL 248 (574)
T ss_dssp TCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHH-HHHHHHHHH---TTCCEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHH-HHHHHHHHh---cCCeEEEecCcHHHHHHh
Confidence 578999999877653 678999999999999764 334444443 345799999999988775
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.28 E-value=0.0003 Score=74.02 Aligned_cols=73 Identities=19% Similarity=0.075 Sum_probs=56.8
Q ss_pred CcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccc
Q 011884 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCK 82 (475)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 82 (475)
..+++-|.+|+.. .+..++|.|++|||||.+...-+...+...+.+..+++++++|+..+.++.+++.+.++.
T Consensus 8 ~~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 8 DSLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp TTCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred hcCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 4689999998641 357799999999999988766566555543334458999999999999999998877543
No 102
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.06 E-value=0.00085 Score=70.94 Aligned_cols=72 Identities=17% Similarity=0.062 Sum_probs=56.3
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCK 82 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 82 (475)
.+++-|.+|+.. .+..++|.|+.|||||.+...-+...+...+.+..++++++.|+..+.+|.+++.+.++.
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 468999998753 267899999999999997766566655553334558999999999999999998877653
No 103
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.03 E-value=0.00077 Score=71.80 Aligned_cols=73 Identities=21% Similarity=0.113 Sum_probs=57.2
Q ss_pred CcccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhccccc
Q 011884 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCK 82 (475)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 82 (475)
..+++-|.+|+.. .+..++|.|+.|||||.+...-+...+...+....++|+++.|+..|.+|.+++.+.++.
T Consensus 10 ~~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~ 82 (724)
T 1pjr_A 10 AHLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGG 82 (724)
T ss_dssp TTSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGG
T ss_pred hhCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcc
Confidence 5689999998753 257899999999999997766566655544334457999999999999999988877644
No 104
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.96 E-value=0.0084 Score=56.33 Aligned_cols=129 Identities=15% Similarity=0.080 Sum_probs=87.2
Q ss_pred cCCCcHHHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEc
Q 011884 309 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 386 (475)
Q Consensus 309 ~~~~~~~~l~~~l~~~--~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t 386 (475)
....|+..|..++... .+.+++||+......+-+.+++...+ ++..-+.|..... +++ -.+....+-+.|
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~---~~y~RlDG~~~~~-~~k----~~~~~~~i~Llt 177 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNK---VHIKRYDGHSIKS-AAA----ANDFSCTVHLFS 177 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSS---CEEEESSSCCC------------CCSEEEEEEE
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCC---CceEeCCCCchhh-hhh----cccCCceEEEEE
Confidence 3556777777766543 56799999999999999998888654 8888888875432 221 123455666667
Q ss_pred CCcccCCC-----CCCCcEEEEecCCCCHHHH-HHHhhhccccC--C--CCcEEEEeechhHHHHHHHH
Q 011884 387 DAMTRGMD-----VEGVNNVVNYDKPAYIKTY-IHRAGRTARAG--Q--LGRCFTLLHKDEVKRFKKLL 445 (475)
Q Consensus 387 ~~~~~GiD-----ip~~~~Vv~~~~~~s~~~~-~Q~~GR~~R~~--~--~g~~~~~~~~~~~~~~~~l~ 445 (475)
.....|+| +...+.||.+|..+++..- +|++-|+.|.+ + .-.++-++..+..++..--.
T Consensus 178 sag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 178 SEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp SSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred CCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 77777786 5679999999999998874 89888888863 2 33456667766666555444
No 105
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.71 E-value=0.0041 Score=54.27 Aligned_cols=40 Identities=23% Similarity=0.133 Sum_probs=27.4
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~ 67 (475)
++=.++.||+|+|||..++-.+.... ..+.+|+++.|...
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~----~~g~kV~v~k~~~d 47 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK----IAKQKIQVFKPEID 47 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH----HTTCCEEEEEEC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH----HCCCEEEEEEeccC
Confidence 45578899999999987655443332 24568999998753
No 106
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.62 E-value=0.0038 Score=55.85 Aligned_cols=39 Identities=21% Similarity=0.100 Sum_probs=27.3
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~ 66 (475)
|.-.++.|++|+|||+.++-.+.... . .+.+|+++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~-~---~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE-Y---ADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH-H---TTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH-h---cCCEEEEEEecc
Confidence 55688899999999987655444332 2 345788887764
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.61 E-value=0.0033 Score=61.93 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=29.2
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHh
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 73 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~ 73 (475)
+-.++.|+.|+|||.... +.+. . .+.++++||++++..|.
T Consensus 162 ~v~~I~G~aGsGKTt~I~----~~~~-~----~~~lVlTpT~~aa~~l~ 201 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL----SRVN-F----EEDLILVPGRQAAEMIR 201 (446)
T ss_dssp EEEEEEECTTSCHHHHHH----HHCC-T----TTCEEEESCHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHH----HHhc-c----CCeEEEeCCHHHHHHHH
Confidence 447889999999997432 2221 1 26899999999998853
No 108
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.42 E-value=0.004 Score=59.66 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=30.7
Q ss_pred ccchhhhhhhhhcCCCCCCC---cEEEECCCCCchhHHhHH
Q 011884 6 LFPVQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~---~~li~a~tGsGKT~~~~~ 43 (475)
+.|||.++++.+...+.+++ .+++.||+|+|||..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 47999999988877766663 389999999999986644
No 109
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.29 E-value=0.029 Score=54.44 Aligned_cols=65 Identities=14% Similarity=0.023 Sum_probs=47.6
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhh
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA 75 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~ 75 (475)
.|.|+|...+..+. ..+.+++..+-+.|||.+....++..+... ++..+++++|++..|..+.+.
T Consensus 163 ~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~--~g~~v~~vA~t~~qA~~vf~~ 227 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN--KDKAVGILAHKGSMSAEVLDR 227 (385)
T ss_dssp CCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHSS--SSCEEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHH
Confidence 68999998776442 235689999999999987666555433332 455799999999988876544
No 110
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.27 E-value=0.0061 Score=53.82 Aligned_cols=40 Identities=23% Similarity=0.089 Sum_probs=27.3
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~ 67 (475)
|.=.++.|++|+|||+.++-.+.... ..+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~----~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ----FAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH----HTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH----HCCCEEEEEEeccC
Confidence 34466899999999987655444432 24568999999765
No 111
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.25 E-value=0.0057 Score=53.04 Aligned_cols=39 Identities=21% Similarity=0.057 Sum_probs=26.3
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~ 66 (475)
+.-.++.||+|+|||+.++-.+..... .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~----~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL----GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH----TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEeecc
Confidence 455789999999999876543333322 344788888874
No 112
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.99 E-value=0.0076 Score=68.01 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=53.2
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhh--ccccceEEEcccHHHHHHHhhhhhcc
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVNSARCKY 79 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~--~~~~~vlil~Pt~~L~~q~~~~~~~~ 79 (475)
++++-|.+++.. .+++++|.|+.|||||.+.+--++..+.... ....+++++++|+..+..|.+++.+.
T Consensus 10 ~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 578999887542 3789999999999999987665666655421 23457999999999999998887663
No 113
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.82 E-value=0.015 Score=51.77 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=28.4
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~ 67 (475)
|.=.++.|++|+|||..++-.+.... ..+.+++++-|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~----~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ----IAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH----TTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH----HCCCeEEEEeecCC
Confidence 45578899999999987655444432 24568999988753
No 114
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.80 E-value=0.015 Score=51.19 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=26.7
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~ 67 (475)
|.=.++.||.|+|||+..+-.+.. .. ..+.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r-~~---~~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRR-GI---YAKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH-HH---HTTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH-HH---HcCCceEEEEeccC
Confidence 455788999999999765544333 22 23567999999765
No 115
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.49 E-value=0.0097 Score=61.67 Aligned_cols=66 Identities=14% Similarity=0.022 Sum_probs=48.6
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhh
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 76 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~ 76 (475)
.|+|+|...+..+. ..+..++.++-|+|||.+....++..+... ++..++++.|+...+..+.+.+
T Consensus 163 ~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~--~~~~i~~va~t~~qA~~~~~~i 228 (592)
T 3cpe_A 163 QLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN--KDKAVGILAHKGSMSAEVLDRT 228 (592)
T ss_dssp CCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTS--SSCEEEEEESSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHHH
Confidence 58999998776541 246789999999999987665554444433 3557999999999988865443
No 116
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.24 E-value=0.031 Score=48.47 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=26.3
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEccc
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt 65 (475)
++=.++.||+|+|||.-.+-.+-... ..+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~----~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQ----IAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHH----HTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH----HcCCeEEEEccc
Confidence 34578899999999965444333322 235689999987
No 117
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.88 E-value=0.059 Score=57.40 Aligned_cols=83 Identities=12% Similarity=0.150 Sum_probs=69.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-cccCCCCCCCcEEE
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 402 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-~~~GiDip~~~~Vv 402 (475)
.+.++++.+|++..+.+.++.+.+.. ..++.+..+||+++..++.+.++.+.+|+.+|+|+|.. +...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 36799999999999999999888764 34688999999999999999999999999999999974 44567888888887
Q ss_pred EecCC
Q 011884 403 NYDKP 407 (475)
Q Consensus 403 ~~~~~ 407 (475)
+-...
T Consensus 496 IDEaH 500 (780)
T 1gm5_A 496 IDEQH 500 (780)
T ss_dssp EESCC
T ss_pred ecccc
Confidence 65443
No 118
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.51 E-value=0.071 Score=46.80 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=14.6
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
..+++.||+|+|||..+
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999754
No 119
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.88 E-value=0.12 Score=50.80 Aligned_cols=82 Identities=17% Similarity=0.219 Sum_probs=66.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-cc---cCCCCCCCcE
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MT---RGMDVEGVNN 400 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-~~---~GiDip~~~~ 400 (475)
.+.++||.+|+++.+.++++.++.....++++..++|+.+..++...++.+..++.+|+|+|+- +. .-++...+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 5679999999999999999999986545689999999999999989999999998999999962 21 1245556787
Q ss_pred EEEecC
Q 011884 401 VVNYDK 406 (475)
Q Consensus 401 Vv~~~~ 406 (475)
||+=..
T Consensus 143 iViDEa 148 (414)
T 3oiy_A 143 VFVDDV 148 (414)
T ss_dssp EEESCH
T ss_pred EEEeCh
Confidence 776544
No 120
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.80 E-value=0.047 Score=56.53 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=41.4
Q ss_pred cccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHH
Q 011884 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (475)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q 71 (475)
.++.-|.+|+..++... . ...++.|+-|.|||.+.-+ ++..+. ..++|.+|+..-+..
T Consensus 175 ~~T~dQ~~al~~~~~~~-~-~~~vlta~RGRGKSa~lG~-~~a~~~------~~~~vtAP~~~a~~~ 232 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMP-P-GVAAVTAARGRGKSALAGQ-LISRIA------GRAIVTAPAKASTDV 232 (671)
T ss_dssp SCCHHHHHHHHHHTTCC-S-EEEEEEECTTSSHHHHHHH-HHHHSS------SCEEEECSSCCSCHH
T ss_pred CCCHHHHHHHHHHHHhh-h-CeEEEecCCCCCHHHHHHH-HHHHHH------hCcEEECCCHHHHHH
Confidence 46778999998887755 2 4579999999999965444 444332 147899999875544
No 121
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.77 E-value=0.063 Score=50.45 Aligned_cols=34 Identities=9% Similarity=-0.289 Sum_probs=20.8
Q ss_pred hhhhhhhhcCCCCCC--CcEEEECCCCCchhHHhHH
Q 011884 10 QVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 10 Q~~a~~~~~~~~~~~--~~~li~a~tGsGKT~~~~~ 43 (475)
|.++++.+...+.++ ...++.||.|+|||..+..
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLE 37 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHH
Confidence 444444433333344 4689999999999975544
No 122
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.48 E-value=0.083 Score=49.77 Aligned_cols=34 Identities=21% Similarity=0.100 Sum_probs=21.6
Q ss_pred hhhhhhhhcCCCCCC--CcEEEECCCCCchhHHhHH
Q 011884 10 QVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 10 Q~~a~~~~~~~~~~~--~~~li~a~tGsGKT~~~~~ 43 (475)
|.+++..+...+..+ .++++.||+|+|||..+..
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~ 65 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALA 65 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHH
Confidence 444444443333334 3699999999999975533
No 123
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.16 E-value=0.046 Score=46.83 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=35.3
Q ss_pred cchhhhhhhhhcCCC-----CCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 7 FPVQVAVWQETIGPG-----LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 7 ~~~Q~~a~~~~~~~~-----~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
.+.|.++++.+...+ ..+..+++.||+|+|||..+.. +...+... .+..++++ +...+..++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~-i~~~~~~~--~g~~~~~~-~~~~~~~~~ 82 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVA-TLKAIYEK--KGIRGYFF-DTKDLIFRL 82 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHH-HHHHHHHH--SCCCCCEE-EHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHH-HHHHHHHH--cCCeEEEE-EHHHHHHHH
Confidence 346777766554221 2357899999999999975433 33333311 23344444 344555553
No 124
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.28 E-value=0.086 Score=45.94 Aligned_cols=43 Identities=28% Similarity=0.432 Sum_probs=25.5
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
..+++.||+|+|||..+.. +...+... +..++++.- ..+..++
T Consensus 55 ~~~~l~G~~GtGKT~la~~-i~~~~~~~---~~~~~~~~~-~~~~~~~ 97 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA-IANELAKR---NVSSLIVYV-PELFREL 97 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH-HHHHHHTT---TCCEEEEEH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHc---CCeEEEEEh-HHHHHHH
Confidence 6799999999999985533 33333322 234554432 3444443
No 125
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.44 E-value=0.29 Score=54.29 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=67.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-ccc---CCCCCCCcE
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTR---GMDVEGVNN 400 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-~~~---GiDip~~~~ 400 (475)
.+.++||.+|+++.+.++++.++.....++.+..+||+++..+|.+.++.+.+|..+|+|+|+- +.. -+++.++++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 4678999999999999999999986655689999999999989999999999999999999962 211 145567888
Q ss_pred EEEecC
Q 011884 401 VVNYDK 406 (475)
Q Consensus 401 Vv~~~~ 406 (475)
||+-..
T Consensus 200 lViDEa 205 (1104)
T 4ddu_A 200 VFVDDV 205 (1104)
T ss_dssp EEESCH
T ss_pred EEEeCC
Confidence 877443
No 126
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.27 E-value=0.72 Score=51.48 Aligned_cols=79 Identities=11% Similarity=0.222 Sum_probs=66.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-CcccCCCCCCCcEEE
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 402 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-~~~~GiDip~~~~Vv 402 (475)
.+.+++|.+|++..+.+.++.+.+.. ..+.++..+++..+..++...++.+.+|+.+|+|+|. .+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 45689999999999999999888653 3457889999999999999999999999999999996 455567888888777
Q ss_pred E
Q 011884 403 N 403 (475)
Q Consensus 403 ~ 403 (475)
+
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 5
No 127
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=90.49 E-value=0.34 Score=45.63 Aligned_cols=14 Identities=36% Similarity=0.321 Sum_probs=12.2
Q ss_pred CccEEEEcchHHHH
Q 011884 191 HLCYLVVDETDRLL 204 (475)
Q Consensus 191 ~~~~lVvDE~H~l~ 204 (475)
..+++++||+|.+.
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 56799999999985
No 128
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.40 E-value=0.3 Score=43.83 Aligned_cols=46 Identities=22% Similarity=0.042 Sum_probs=30.0
Q ss_pred hhcC-CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 16 ETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 16 ~~~~-~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
.++. .+..|.-++|.|++|+|||..++-.+.+.+.+. +..+++++-
T Consensus 21 ~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~---~~~v~~~s~ 67 (251)
T 2zts_A 21 ELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTL 67 (251)
T ss_dssp GGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEES
T ss_pred HhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc---CCCceeecc
Confidence 3443 444567799999999999986655555444332 335777763
No 129
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=90.39 E-value=0.18 Score=47.32 Aligned_cols=46 Identities=11% Similarity=-0.138 Sum_probs=30.7
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHH
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L 68 (475)
.+..| -++|.||+|+|||..++-.+....... .+.+++|+..-.++
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g--~g~~vlyId~E~s~ 70 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQY--PDAVCLFYDSEFGI 70 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHC--TTCEEEEEESSCCC
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcC--CCceEEEEeccchh
Confidence 45556 689999999999987666555443321 24578888765443
No 130
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.21 E-value=0.14 Score=42.14 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=16.9
Q ss_pred CCCCcEEEECCCCCchhHHh
Q 011884 22 LFERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 22 ~~~~~~li~a~tGsGKT~~~ 41 (475)
..+.++++.||+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 35688999999999999754
No 131
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.41 E-value=0.35 Score=47.48 Aligned_cols=50 Identities=22% Similarity=0.208 Sum_probs=30.1
Q ss_pred cchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEE
Q 011884 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 62 (475)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil 62 (475)
.+.+..++..++. ..+.-++|.||||||||+. +..++..+... ...++++
T Consensus 152 ~~~~~~~L~~l~~--~~ggii~I~GpnGSGKTTl-L~allg~l~~~---~g~I~~~ 201 (418)
T 1p9r_A 152 TAHNHDNFRRLIK--RPHGIILVTGPTGSGKSTT-LYAGLQELNSS---ERNILTV 201 (418)
T ss_dssp CHHHHHHHHHHHT--SSSEEEEEECSTTSCHHHH-HHHHHHHHCCT---TSCEEEE
T ss_pred CHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHH-HHHHHhhcCCC---CCEEEEe
Confidence 3445556666532 3456789999999999974 34455544322 2345554
No 132
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=89.35 E-value=0.58 Score=46.78 Aligned_cols=76 Identities=14% Similarity=0.036 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCCcccCC
Q 011884 314 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 393 (475)
Q Consensus 314 ~~~l~~~l~~~~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~~~~Gi 393 (475)
...+...++. .+.++++.+.|...++++.+.|.+.+ +.+....+. . .+..| .+.++...+..|+
T Consensus 371 ~~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~---i~~~~~~~~-~---------~~~~g--~v~i~~g~L~~GF 434 (483)
T 3hjh_A 371 LDALRKFLET-FDGPVVFSVESEGRREALGELLARIK---IAPQRIMRL-D---------EASDR--GRYLMIGAAEHGF 434 (483)
T ss_dssp THHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGT---CCCEECSCG-G---------GCCTT--CEEEEESCCCSCE
T ss_pred HHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcC---CCceecCch-h---------hcCCC--cEEEEEcccccCc
Confidence 3556666543 25799999999999999999999876 443332211 0 01223 5666777889999
Q ss_pred CCCCCcEEEEec
Q 011884 394 DVEGVNNVVNYD 405 (475)
Q Consensus 394 Dip~~~~Vv~~~ 405 (475)
.+|...++|+..
T Consensus 435 ~~p~~klaVITE 446 (483)
T 3hjh_A 435 VDTVRNLALICE 446 (483)
T ss_dssp EETTTTEEEEEH
T ss_pred ccCCCCEEEEEc
Confidence 999988888866
No 133
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.32 E-value=1.4 Score=38.46 Aligned_cols=78 Identities=8% Similarity=0.224 Sum_probs=56.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcCCC--ceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-----c-ccCCCCCC
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----M-TRGMDVEG 397 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~~~--~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-----~-~~GiDip~ 397 (475)
+.++||.+|+++.+.++++.+++.... +..+..++|+.+..+.. +.+.++..+|+|+|.- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999999988876432 57888999998765443 3445567799999952 1 23466777
Q ss_pred CcEEEEecC
Q 011884 398 VNNVVNYDK 406 (475)
Q Consensus 398 ~~~Vv~~~~ 406 (475)
++++|+-+.
T Consensus 159 ~~~lViDEa 167 (220)
T 1t6n_A 159 IKHFILDEC 167 (220)
T ss_dssp CCEEEEESH
T ss_pred CCEEEEcCH
Confidence 888776543
No 134
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=89.20 E-value=0.36 Score=39.82 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=19.1
Q ss_pred hcCCCCCCCcEEEECCCCCchhHHh
Q 011884 17 TIGPGLFERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 17 ~~~~~~~~~~~li~a~tGsGKT~~~ 41 (475)
.+..+ .+..+.+.||+|+|||..+
T Consensus 30 ~l~~~-~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 30 VLRHK-HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp HCCCC-CCSEEEEESSSTTTTCHHH
T ss_pred HHHhc-CCCEEEEECCCCCCHHHHH
Confidence 34445 6788999999999999754
No 135
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.84 E-value=0.47 Score=41.88 Aligned_cols=47 Identities=15% Similarity=0.000 Sum_probs=29.7
Q ss_pred hhhhhcC-CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 13 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 13 a~~~~~~-~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
++..++. .+..|.-+++.||+|+|||..+...+.. +.. .+.+++++.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~-~~~---~~~~v~~~~ 58 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK-GLR---DGDPCIYVT 58 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHH-HHH---HTCCEEEEE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHH-HHH---CCCeEEEEE
Confidence 3444554 5566788999999999999755443322 222 233577765
No 136
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.39 E-value=0.12 Score=42.34 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=15.7
Q ss_pred CCCcEEEECCCCCchhHH
Q 011884 23 FERDLCINSPTGSGKTLS 40 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~ 40 (475)
.+.++++.||+|+|||..
T Consensus 26 ~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp CSSCEEEEEETTCCHHHH
T ss_pred CCCcEEEECCCCccHHHH
Confidence 457899999999999974
No 137
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.38 E-value=0.46 Score=41.60 Aligned_cols=44 Identities=16% Similarity=-0.076 Sum_probs=29.5
Q ss_pred hhhhhcC-CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 13 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 13 a~~~~~~-~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
++..++. .+..|.-+++.||+|+|||..+...+. . .+.+++++.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~----~---~~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL----L---SGKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH----H---HCSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH----H---cCCcEEEEE
Confidence 3444554 566778899999999999986554333 1 233577765
No 138
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.38 E-value=0.21 Score=43.63 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=19.0
Q ss_pred hhhcCCCCCCCcEEEECCCCCchhHHh
Q 011884 15 QETIGPGLFERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 15 ~~~~~~~~~~~~~li~a~tGsGKT~~~ 41 (475)
+..+..+-..+.+++.||+|+|||..+
T Consensus 49 ~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 49 KSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 334444334457999999999999755
No 139
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.11 E-value=0.17 Score=43.03 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=15.8
Q ss_pred CCcEEEECCCCCchhHHhH
Q 011884 24 ERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~ 42 (475)
...+++.||+|+|||..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3679999999999997543
No 140
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=87.94 E-value=0.62 Score=43.35 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.6
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
+.++++.||+|+|||..+-.
T Consensus 67 ~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45799999999999986544
No 141
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.84 E-value=0.4 Score=45.54 Aligned_cols=55 Identities=16% Similarity=0.083 Sum_probs=30.8
Q ss_pred hhhhhhhhcCCCCCC--CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEccc
Q 011884 10 QVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (475)
Q Consensus 10 Q~~a~~~~~~~~~~~--~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt 65 (475)
|.++++.+...+..+ .++++.||+|+|||..+-. +...+.........++.+.++
T Consensus 42 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~-la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 42 QDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILA-LTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHH-HHHHHHHHHHHTTSEEEECSS
T ss_pred CHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHH-HHHHhCCCcccccceEEEccc
Confidence 444444455555555 5699999999999976543 333332211112245555544
No 142
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=87.83 E-value=1.1 Score=39.62 Aligned_cols=77 Identities=9% Similarity=0.158 Sum_probs=52.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-----C-cccCCCCCCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----A-MTRGMDVEGV 398 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-----~-~~~GiDip~~ 398 (475)
.+.++||.+|+++.+.++++.++.....+..+..++|+.+..++. +.+.+ ..+|+|+|. . ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI---EDISK-GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH---HHHHS-CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHH---HHhcC-CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 466899999999999999999998765667888888887554332 23333 578999995 1 1235667778
Q ss_pred cEEEEec
Q 011884 399 NNVVNYD 405 (475)
Q Consensus 399 ~~Vv~~~ 405 (475)
++||+-.
T Consensus 169 ~~lViDE 175 (228)
T 3iuy_A 169 TYLVIDE 175 (228)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 8877644
No 143
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.82 E-value=2.3 Score=41.81 Aligned_cols=35 Identities=29% Similarity=0.221 Sum_probs=23.4
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
.-+++.|++|+|||+++...+ ..+.. .+.+|+++.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA-~~l~~---~G~kVllv~ 135 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA-RYFQK---RGYKVGVVC 135 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHHT---TTCCEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHH-HHHHH---CCCeEEEEe
Confidence 458889999999998765533 33433 244676665
No 144
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=87.77 E-value=0.54 Score=44.07 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=27.0
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHh-hhhccccceEEEcccHHHHHHH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLS-NRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~-~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
+.++++.||+|+|||..+.. +...+. .. +..++++.- ..+..++
T Consensus 152 ~~~lll~G~~GtGKT~La~a-ia~~~~~~~---g~~v~~~~~-~~l~~~l 196 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA-MAHELSEKK---GVSTTLLHF-PSFAIDV 196 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH-HHHHHHHHS---CCCEEEEEH-HHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHHHHhc---CCcEEEEEH-HHHHHHH
Confidence 57899999999999986544 333333 22 334665543 2455554
No 145
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.75 E-value=0.38 Score=43.00 Aligned_cols=42 Identities=14% Similarity=0.001 Sum_probs=28.3
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEccc
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt 65 (475)
.+..|.-+++.||+|+|||..++..+...+. .+.+++++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~----~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLK----MGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHH----TTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh----cCCeEEEEEcc
Confidence 3445778999999999999865554444332 23468887643
No 146
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.70 E-value=0.17 Score=42.92 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=16.4
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
..++++.||+|+|||..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 46799999999999975543
No 147
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=87.34 E-value=5.6 Score=32.82 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=49.8
Q ss_pred cccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCc
Q 011884 55 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 134 (475)
Q Consensus 55 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (475)
.+.++||.++++.-+..+++.+ .. .+..+..++|+.+
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L---------------------------------------~~----~~~~~~~~hg~~~ 70 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDEL---------------------------------------DD----LGYPCDKIHGGMI 70 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHH---------------------------------------HH----TTCCEEEECTTSC
T ss_pred CCCcEEEEECCHHHHHHHHHHH---------------------------------------HH----cCCcEEEEeCCCC
Confidence 3457999999999998854433 22 2677888898876
Q ss_pred hHHHHHHHhhccccccCccCCchhHHHhhh-cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcch
Q 011884 135 IADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 200 (475)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~ 200 (475)
..+..... +.+. ....|+|+|. .+ . .++++++++++|.-+.
T Consensus 71 ~~~r~~~~------------------~~f~~g~~~vlv~T~-~~----~--~Gld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 71 QEDRFDVM------------------NEFKRGEYRYLVATD-VA----A--RGIDIENISLVINYDL 112 (163)
T ss_dssp HHHHHHHH------------------HHHHTTSCSEEEECG-GG----T--TTCCCSCCSEEEESSC
T ss_pred HHHHHHHH------------------HHHHcCCCeEEEECC-hh----h--cCCchhcCCEEEEeCC
Confidence 55443222 2222 2468999992 21 2 3467778888886443
No 148
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.23 E-value=0.12 Score=49.13 Aligned_cols=33 Identities=18% Similarity=0.020 Sum_probs=24.0
Q ss_pred hhhhhhhhhcCCCCCCCcEEEECCCCCchhHHh
Q 011884 9 VQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~ 41 (475)
.|.+++..+...+..+.++++.||+|+|||..+
T Consensus 31 g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 31 GQKYMINRLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp SCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 355555555555556789999999999999754
No 149
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=86.96 E-value=2.5 Score=37.91 Aligned_cols=77 Identities=13% Similarity=0.258 Sum_probs=54.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCC-CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-----cc--cCCCCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MT--RGMDVE 396 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-----~~--~GiDip 396 (475)
.+.++||.+|+++.+.++++.++.... .+..+..++|+....+....+ .+..+|+|+|.- +. .++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 345799999999999999988877632 347788899987764433222 246799999951 11 356777
Q ss_pred CCcEEEEec
Q 011884 397 GVNNVVNYD 405 (475)
Q Consensus 397 ~~~~Vv~~~ 405 (475)
.++++|+-.
T Consensus 186 ~~~~lViDE 194 (249)
T 3ber_A 186 ALKYLVMDE 194 (249)
T ss_dssp TCCEEEECS
T ss_pred ccCEEEEcC
Confidence 888877644
No 150
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.52 E-value=0.69 Score=43.47 Aligned_cols=48 Identities=10% Similarity=-0.220 Sum_probs=33.0
Q ss_pred hhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 13 a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
.+..++..+..|.-++|.|++|+|||..++..+.....+ +.++++++-
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~----g~~vl~~sl 104 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSL 104 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT----TCEEEEEES
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc----CCeEEEEEC
Confidence 344455566677889999999999998665555444332 246888873
No 151
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=86.22 E-value=0.26 Score=47.45 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=17.0
Q ss_pred CCCcEEEECCCCCchhHHhHH
Q 011884 23 FERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~ 43 (475)
...++++.||+|+|||.++-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 357899999999999985533
No 152
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=85.97 E-value=0.54 Score=43.84 Aligned_cols=34 Identities=29% Similarity=0.238 Sum_probs=24.5
Q ss_pred hhhhhhhhhcCCCCCCC--cEEEECCCCCchhHHhH
Q 011884 9 VQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYA 42 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~--~~li~a~tGsGKT~~~~ 42 (475)
+|..++..+...+..++ ++++.||+|+|||..+.
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp SCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHH
Confidence 35566666666665553 69999999999997543
No 153
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=85.30 E-value=0.21 Score=46.57 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.1
Q ss_pred CCcEEEECCCCCchhHHhH
Q 011884 24 ERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~ 42 (475)
...+++.||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999997553
No 154
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=85.30 E-value=0.15 Score=51.27 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=23.8
Q ss_pred hhhhhhhhhcCCCCCCCcEEEECCCCCchhHH
Q 011884 9 VQVAVWQETIGPGLFERDLCINSPTGSGKTLS 40 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~ 40 (475)
+|.+++..+...+..+.++++.||+|+|||..
T Consensus 26 Gq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 26 ERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp SCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 34555555555556678999999999999974
No 155
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.16 E-value=0.74 Score=46.42 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=16.0
Q ss_pred CCCcEEEECCCCCchhHH
Q 011884 23 FERDLCINSPTGSGKTLS 40 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~ 40 (475)
.+..++|.||||||||+.
T Consensus 259 ~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTT 276 (511)
T ss_dssp TTCCEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577899999999999974
No 156
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=85.15 E-value=3.8 Score=35.12 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=53.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-----Ccc-cCCCCCCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT-RGMDVEGV 398 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-----~~~-~GiDip~~ 398 (475)
.+.++||.+|+++.+.++++.++..... ..+..++|+.+.....+.+ . ...+|+|+|. .+. ..+++..+
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~-~~~~i~v~T~~~l~~~~~~~~~~~~~~ 145 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPH-LKVVAVYGGTGYGKQKEAL---L-RGADAVVATPGRALDYLRQGVLDLSRV 145 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTT-SCEEEECSSSCSHHHHHHH---H-HCCSEEEECHHHHHHHHHHTSSCCTTC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhc-ceEEEEECCCChHHHHHHh---h-CCCCEEEECHHHHHHHHHcCCcchhhc
Confidence 3568999999999999999999887532 6778888887654433322 2 2578999995 222 24667778
Q ss_pred cEEEEec
Q 011884 399 NNVVNYD 405 (475)
Q Consensus 399 ~~Vv~~~ 405 (475)
++||+-+
T Consensus 146 ~~iViDE 152 (207)
T 2gxq_A 146 EVAVLDE 152 (207)
T ss_dssp SEEEEES
T ss_pred eEEEEEC
Confidence 8877644
No 157
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=85.05 E-value=0.94 Score=41.95 Aligned_cols=48 Identities=8% Similarity=-0.025 Sum_probs=31.0
Q ss_pred hhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 13 a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
++..+.-.+..|.-++|.||+|+|||..+...+. .+... .+.+++++.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~-~~~~~--~G~~v~~~~ 71 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL-QWGTA--MGKKVGLAM 71 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHH-HHHHT--SCCCEEEEE
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH-HHHHH--cCCeEEEEe
Confidence 4555565666788899999999999976544333 22221 133577765
No 158
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=85.05 E-value=2.3 Score=37.90 Aligned_cols=77 Identities=10% Similarity=0.209 Sum_probs=55.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-----Ccc-cCCCCCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT-RGMDVEG 397 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-----~~~-~GiDip~ 397 (475)
.+.++||.+|+++.+.++++.+++.. ..+..+..++|+.+..+....+ .+ ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL---ER-GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH---HH-CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHh---cC-CCCEEEECHHHHHHHHHcCCCCccc
Confidence 35679999999999999988887753 2357888899998776554433 32 478999995 222 2457778
Q ss_pred CcEEEEec
Q 011884 398 VNNVVNYD 405 (475)
Q Consensus 398 ~~~Vv~~~ 405 (475)
++++|+-.
T Consensus 177 ~~~lViDE 184 (242)
T 3fe2_A 177 TTYLVLDE 184 (242)
T ss_dssp CCEEEETT
T ss_pred ccEEEEeC
Confidence 88877644
No 159
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=84.91 E-value=0.52 Score=42.98 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=17.5
Q ss_pred CCCCCcEEEECCCCCchhHHh
Q 011884 21 GLFERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~~ 41 (475)
+..|.-+++.||||||||+..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 556778999999999999743
No 160
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.89 E-value=0.81 Score=45.11 Aligned_cols=45 Identities=29% Similarity=0.355 Sum_probs=32.3
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~ 72 (475)
..+++|.|+||||||... ..++..+... +..++|+=|..++...+
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~~---g~~viv~Dpkge~~~~~ 97 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLLR---GDRMVIVDPNGDMLSKF 97 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHHT---TCEEEEEEETTHHHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHHC---CCcEEEEeCCCchhHHh
Confidence 478999999999999864 3444444432 34688888988886543
No 161
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=84.83 E-value=0.87 Score=45.05 Aligned_cols=47 Identities=11% Similarity=-0.212 Sum_probs=33.0
Q ss_pred hhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 14 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 14 ~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
+..++..+..|.-++|.|++|+|||..++-.+...... +.+|+|++-
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~----g~~vl~fSl 233 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSL 233 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT----TCEEEEECS
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc----CCEEEEEEC
Confidence 34455556667889999999999998766655554433 346888873
No 162
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=84.79 E-value=0.89 Score=43.50 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=19.1
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHh
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLS 50 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~ 50 (475)
.+..++|.||||||||+. +..++..+.
T Consensus 122 ~~g~i~I~GptGSGKTTl-L~~l~g~~~ 148 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT-LAAMLDYLN 148 (356)
T ss_dssp SSEEEEEECSTTSCHHHH-HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHhccc
Confidence 355799999999999974 344555443
No 163
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=84.76 E-value=2.8 Score=36.05 Aligned_cols=76 Identities=11% Similarity=0.162 Sum_probs=53.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcCCC--ceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-----Cccc-CCCCCC
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVEG 397 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~~~--~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-----~~~~-GiDip~ 397 (475)
+.++||.+|+++.+.++++.+.+.... +..+..++|+.+..+... .+ .+..+|+|+|. .+.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 458999999999999999988876432 577888899876643322 22 24678999996 1222 346667
Q ss_pred CcEEEEec
Q 011884 398 VNNVVNYD 405 (475)
Q Consensus 398 ~~~Vv~~~ 405 (475)
++++|+-.
T Consensus 147 ~~~lViDE 154 (206)
T 1vec_A 147 VQMIVLDE 154 (206)
T ss_dssp CCEEEEET
T ss_pred CCEEEEEC
Confidence 78777644
No 164
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=84.36 E-value=1.7 Score=38.61 Aligned_cols=78 Identities=10% Similarity=0.210 Sum_probs=48.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCC-CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-----Cccc-CCCCCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVEG 397 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-----~~~~-GiDip~ 397 (475)
.+.++||.+|+++.+.++++.+++... .+..+...+|+.... .....+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 456899999999999999999988753 346677777775432 334455566689999993 2333 366677
Q ss_pred CcEEEEec
Q 011884 398 VNNVVNYD 405 (475)
Q Consensus 398 ~~~Vv~~~ 405 (475)
+++||+-.
T Consensus 174 ~~~lViDE 181 (237)
T 3bor_A 174 IKMFVLDE 181 (237)
T ss_dssp CCEEEEES
T ss_pred CcEEEECC
Confidence 88777644
No 165
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=84.30 E-value=1 Score=44.47 Aligned_cols=48 Identities=13% Similarity=-0.117 Sum_probs=32.8
Q ss_pred hhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 14 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 14 ~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
+..++..+..|.-++|.|++|+|||..++-.+....... +.+|+++..
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~---g~~vl~~sl 237 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE---GVGVGIYSL 237 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---CCCEEEEES
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCeEEEEEC
Confidence 444555666778899999999999986655555443322 346888764
No 166
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=84.17 E-value=1.1 Score=44.47 Aligned_cols=49 Identities=6% Similarity=-0.144 Sum_probs=33.0
Q ss_pred hhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 13 a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
.+..+...+..|.-++|.|++|+|||..++..+...... .+.+|+++..
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g~~Vl~~s~ 240 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TNENVAIFSL 240 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SSCCEEEEES
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEEEC
Confidence 345556566677889999999999998665544443322 2336888763
No 167
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=84.11 E-value=1.3 Score=49.58 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=43.4
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhh--------ccccceEEEcccHHHHHHHhhhhhccc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRA--------VRCLRALVVLPTRDLALQVNSARCKYC 80 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~--------~~~~~vlil~Pt~~L~~q~~~~~~~~~ 80 (475)
...+|.|..|||||.+...-++..+...+ ..-.++|+++=|+.-+..|.+++.+.+
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 44599999999999987766777775421 233479999999999999988877654
No 168
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=84.03 E-value=0.56 Score=42.66 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=16.3
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
.+..+++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4578999999999999754
No 169
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=83.85 E-value=0.18 Score=47.19 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=15.6
Q ss_pred CcEEEECCCCCchhHHhHH
Q 011884 25 RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~ 43 (475)
..+++.||+|+|||..+-.
T Consensus 48 ~~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp EEEEEESCSSSSHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHH
Confidence 3699999999999986543
No 170
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.82 E-value=0.63 Score=41.22 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.7
Q ss_pred CCCcEEEECCCCCchhHHhH
Q 011884 23 FERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~ 42 (475)
.+..+++.||+|+|||..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999998543
No 171
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=83.72 E-value=2.1 Score=37.75 Aligned_cols=76 Identities=11% Similarity=0.151 Sum_probs=55.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCC--CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-c-----ccCCCCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRGMDVE 396 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~--~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-~-----~~GiDip 396 (475)
.+.++||.+|+++.+.++++.+++... .+..+..++|+.+..++.+.+ ...+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 456899999999999999999988753 257888999998765544332 35789999962 1 1345666
Q ss_pred CCcEEEEec
Q 011884 397 GVNNVVNYD 405 (475)
Q Consensus 397 ~~~~Vv~~~ 405 (475)
.++++|+-.
T Consensus 166 ~~~~lViDE 174 (230)
T 2oxc_A 166 SIRLFILDE 174 (230)
T ss_dssp GCCEEEESS
T ss_pred cCCEEEeCC
Confidence 777777643
No 172
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.49 E-value=1.1 Score=43.16 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=19.7
Q ss_pred CCCCCcEEEECCCCCchhHHhHHHHHHHH
Q 011884 21 GLFERDLCINSPTGSGKTLSYALPIVQTL 49 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~~~~~~~~~l 49 (475)
+..+..+++.||||||||+.. ..++..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll-~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI-ASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH-HHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH-HHHHhhc
Confidence 345678999999999999743 3344433
No 173
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=83.33 E-value=2.3 Score=43.03 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=53.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 387 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~ 387 (475)
.+.+||.+|++..+.+..+.++..+ +.+..++|+.+..++..+...+..|..+++++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANG---VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 5789999999999999999999865 8889999999998888999999999999999985
No 174
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.25 E-value=0.35 Score=46.01 Aligned_cols=34 Identities=24% Similarity=0.139 Sum_probs=22.8
Q ss_pred hhhhhhhhcCCCCCCC--cEEEECCCCCchhHHhHH
Q 011884 10 QVAVWQETIGPGLFER--DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 10 Q~~a~~~~~~~~~~~~--~~li~a~tGsGKT~~~~~ 43 (475)
|..+++.+...+..|+ ++++.||+|+|||..+..
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 5555554444444553 489999999999975543
No 175
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.19 E-value=1.6 Score=40.84 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=26.0
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHH
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q 71 (475)
+..+++.||+|+|||..+-. +...+... +..++++.. ..+..+
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~~~~---~~~~~~i~~-~~~~~~ 79 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEAKKR---GYRVIYSSA-DDFAQA 79 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHHHHT---TCCEEEEEH-HHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHHC---CCEEEEEEH-HHHHHH
Confidence 46899999999999975433 33333222 335666644 333444
No 176
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.02 E-value=0.77 Score=42.77 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=17.1
Q ss_pred CCCCcEEEECCCCCchhHHhH
Q 011884 22 LFERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 22 ~~~~~~li~a~tGsGKT~~~~ 42 (475)
..++.+++.||+|+|||..+-
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHH
Confidence 346789999999999998543
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.01 E-value=0.73 Score=43.81 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=23.2
Q ss_pred hhhhhhhhhcCCC-CCC--CcEEEECCCCCchhHHhH
Q 011884 9 VQVAVWQETIGPG-LFE--RDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 9 ~Q~~a~~~~~~~~-~~~--~~~li~a~tGsGKT~~~~ 42 (475)
+|..+++.+...+ ..+ .++++.||+|+|||..+.
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHH
Confidence 3555655555555 343 359999999999997543
No 178
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=82.90 E-value=1.2 Score=42.12 Aligned_cols=47 Identities=13% Similarity=-0.075 Sum_probs=32.4
Q ss_pred hhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 14 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 14 ~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
+..++..+..|.-++|.|++|+|||..++..+..... .+.+|+|++.
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----~g~~Vl~fSl 82 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----DDRGVAVFSL 82 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----TTCEEEEEES
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cCCeEEEEeC
Confidence 3445556667788999999999999866555544433 2346888864
No 179
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=82.88 E-value=0.73 Score=39.86 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=17.1
Q ss_pred CCCcEEEECCCCCchhHHhHH
Q 011884 23 FERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~ 43 (475)
.+..+++.|++|||||+++-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 457899999999999986533
No 180
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.86 E-value=0.8 Score=42.05 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=16.3
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
....+++.||+|+|||..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 4578999999999999754
No 181
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=82.79 E-value=9.4 Score=31.43 Aligned_cols=76 Identities=13% Similarity=0.219 Sum_probs=48.1
Q ss_pred cccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCc
Q 011884 55 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 134 (475)
Q Consensus 55 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (475)
.+.++||.++++.-+..+++.+ .. .+..+..++|+.+
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L---------------------------------------~~----~~~~~~~~~~~~~ 65 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKL---------------------------------------RN----DKFTVSAIYSDLP 65 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHH---------------------------------------HH----TTCCEEEECTTSC
T ss_pred CCCCEEEEECCHHHHHHHHHHH---------------------------------------HH----cCCCEEEEECCCC
Confidence 3457999999999988854432 22 2567888888876
Q ss_pred hHHHHHHHhhccccccCccCCchhHHHhhh-cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEc
Q 011884 135 IADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 198 (475)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvD 198 (475)
..+..... +.+. ....|+|+|. . +. .+++++.++++|.-
T Consensus 66 ~~~r~~~~------------------~~f~~g~~~vlv~T~-~----~~--~G~d~~~~~~Vi~~ 105 (165)
T 1fuk_A 66 QQERDTIM------------------KEFRSGSSRILISTD-L----LA--RGIDVQQVSLVINY 105 (165)
T ss_dssp HHHHHHHH------------------HHHHTTSCSEEEEEG-G----GT--TTCCCCSCSEEEES
T ss_pred HHHHHHHH------------------HHHHcCCCEEEEEcC-h----hh--cCCCcccCCEEEEe
Confidence 55443222 1222 2468999992 2 12 34677788888753
No 182
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=82.67 E-value=9.9 Score=31.67 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=48.9
Q ss_pred cccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCc
Q 011884 55 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 134 (475)
Q Consensus 55 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (475)
...++||.|+++..+..+++.+ .. .+..+..++|+.+
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L---------------------------------------~~----~~~~~~~~~g~~~ 69 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEM---------------------------------------IQ----DGHQVSLLSGELT 69 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHH---------------------------------------HT----TTCCEEEECSSCC
T ss_pred CCCCEEEEECCHHHHHHHHHHH---------------------------------------HH----cCCcEEEEeCCCC
Confidence 3458999999999998854433 22 2677888999877
Q ss_pred hHHHHHHHhhccccccCccCCchhHHHhhh-cCCcEEEeCchHHHHHhhcCCCcccCCccEEEE
Q 011884 135 IADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVV 197 (475)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVv 197 (475)
........ +.+. ...+|+|+|.- + ..+++++.+++||.
T Consensus 70 ~~~R~~~~------------------~~f~~g~~~vLvaT~~-----~--~~Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 70 VEQRASII------------------QRFRDGKEKVLITTNV-----C--ARGIDVKQVTIVVN 108 (175)
T ss_dssp HHHHHHHH------------------HHHHTTSCSEEEECCS-----C--CTTTCCTTEEEEEE
T ss_pred HHHHHHHH------------------HHHHcCCCeEEEEecc-----h--hcCCCcccCCEEEE
Confidence 65543322 2222 24689999921 1 23577788888884
No 183
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=82.65 E-value=3.7 Score=42.16 Aligned_cols=59 Identities=7% Similarity=0.135 Sum_probs=52.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHH--HcCCeEEEEEcC
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF--REGKIQVLVSSD 387 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f--~~g~~~iLv~t~ 387 (475)
.+.+||.+|+++.+.+..+.+...+ +.+..++|+++..++..++..+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG---ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT---CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC---CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 5799999999999999999999875 8899999999999888888888 457889999997
No 184
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=82.51 E-value=0.87 Score=45.25 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=17.5
Q ss_pred CCCCcEEEECCCCCchhHHhHH
Q 011884 22 LFERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 22 ~~~~~~li~a~tGsGKT~~~~~ 43 (475)
..++.+++.||+|+|||..+..
T Consensus 61 ~~~~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCeEEEECCCcCCHHHHHHH
Confidence 3446899999999999986543
No 185
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=82.50 E-value=1.1 Score=42.73 Aligned_cols=46 Identities=20% Similarity=0.087 Sum_probs=30.7
Q ss_pred hhhcC--CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 15 QETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 15 ~~~~~--~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
..++. .+..|.-++|.||+|+|||..++..+..... .+.+++|+..
T Consensus 50 D~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~----~g~~vlyi~~ 97 (349)
T 2zr9_A 50 DVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA----AGGIAAFIDA 97 (349)
T ss_dssp HHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH----TTCCEEEEES
T ss_pred HHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh----CCCeEEEEEC
Confidence 34444 4556677999999999999876555444332 2446888764
No 186
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=82.34 E-value=0.58 Score=43.99 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=19.9
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHh
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLS 50 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~ 50 (475)
.+.+++|.||+|+|||.+.-. ++..+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~-v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND-VMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH-HHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 347899999999999976544 444443
No 187
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=82.25 E-value=0.85 Score=38.76 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=15.7
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
.|+-+++.||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3667899999999999743
No 188
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=82.18 E-value=0.85 Score=41.16 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=15.8
Q ss_pred CCcEEEECCCCCchhHHhH
Q 011884 24 ERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~ 42 (475)
...+++.||+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 189
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=81.94 E-value=8.8 Score=34.12 Aligned_cols=76 Identities=12% Similarity=0.187 Sum_probs=53.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-c----c-cCCCCCCC
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M----T-RGMDVEGV 398 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-~----~-~GiDip~~ 398 (475)
+.++||.+|+++.+.++++.++... ..+..+..++|+.+..+... .. ....+|+|+|.- + . ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---EV-QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---HH-SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---Hh-CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 3589999999999999999888764 23467788888876543332 22 246789999962 1 1 23577778
Q ss_pred cEEEEec
Q 011884 399 NNVVNYD 405 (475)
Q Consensus 399 ~~Vv~~~ 405 (475)
+++|+-.
T Consensus 176 ~~lViDE 182 (253)
T 1wrb_A 176 KYIVLDE 182 (253)
T ss_dssp CEEEEET
T ss_pred CEEEEeC
Confidence 8877644
No 190
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=81.92 E-value=1.7 Score=38.70 Aligned_cols=24 Identities=25% Similarity=0.083 Sum_probs=19.2
Q ss_pred CCCCCCcEEEECCCCCchhHHhHH
Q 011884 20 PGLFERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~ 43 (475)
.+..|.-+.+.||+|+|||+.+..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHH
Confidence 455678899999999999985544
No 191
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=81.78 E-value=0.89 Score=39.52 Aligned_cols=18 Identities=39% Similarity=0.396 Sum_probs=14.8
Q ss_pred cEEEECCCCCchhHHhHH
Q 011884 26 DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~ 43 (475)
-.++.|++|||||..+..
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 468999999999986544
No 192
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=81.78 E-value=0.62 Score=38.88 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=13.9
Q ss_pred cEEEECCCCCchhHHhH
Q 011884 26 DLCINSPTGSGKTLSYA 42 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~ 42 (475)
-++++||+|||||+++-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999998543
No 193
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=81.77 E-value=0.76 Score=39.86 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.1
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
++-++|.||||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 466899999999999754
No 194
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=81.70 E-value=0.86 Score=39.47 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=14.9
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
.++.+.|.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678899999999999743
No 195
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=81.68 E-value=0.73 Score=39.34 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=17.0
Q ss_pred CCCCCcEEEECCCCCchhHHh
Q 011884 21 GLFERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~~ 41 (475)
+..|.-+++.||+|||||+.+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 345778999999999999743
No 196
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=81.62 E-value=0.77 Score=43.39 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.2
Q ss_pred CcEEEECCCCCchhHHhHH
Q 011884 25 RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~ 43 (475)
.-++|.||||+|||..+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3588999999999985533
No 197
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=81.56 E-value=4.9 Score=36.29 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=54.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCC-CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC------Ccc-cCCCCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD------AMT-RGMDVE 396 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~------~~~-~GiDip 396 (475)
.+.++||.+|+++.+.++++.+++... .+..+..++|+....... ..+..+ .+|+|+|+ +.. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEA---QKLGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHH---HHHHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHH---HHhcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 466899999999999999999988642 346777888887654333 333433 78999994 211 246777
Q ss_pred CCcEEEEec
Q 011884 397 GVNNVVNYD 405 (475)
Q Consensus 397 ~~~~Vv~~~ 405 (475)
++.+||+-.
T Consensus 201 ~l~~lViDE 209 (262)
T 3ly5_A 201 NLQCLVIDE 209 (262)
T ss_dssp TCCEEEECS
T ss_pred cCCEEEEcC
Confidence 888877644
No 198
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=81.35 E-value=1.1 Score=38.96 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=17.8
Q ss_pred CCCCCCcEEEECCCCCchhHHh
Q 011884 20 PGLFERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~ 41 (475)
.+..+.-++++||+|||||..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHH
Confidence 4556788999999999999744
No 199
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=81.17 E-value=8.3 Score=32.15 Aligned_cols=78 Identities=13% Similarity=0.108 Sum_probs=49.2
Q ss_pred cccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCc
Q 011884 55 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 134 (475)
Q Consensus 55 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (475)
.+.++||.|+++.-+..+++.+ ... +..+..++|+.+
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L---------------------------------------~~~----~~~~~~~hg~~~ 66 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLL---------------------------------------VEQ----NFPAIAIHRGMP 66 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHH---------------------------------------HHT----TCCEEEECTTSC
T ss_pred CCCcEEEEECCHHHHHHHHHHH---------------------------------------Hhc----CCCEEEEECCCC
Confidence 3457999999999988854433 221 667888888876
Q ss_pred hHHHHHHHhhccccccCccCCchhHHHhhh-cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcch
Q 011884 135 IADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 200 (475)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~ 200 (475)
..+....+ +.+. ....|+|+|.-. ..+++++.+++||.-+.
T Consensus 67 ~~~r~~~~------------------~~f~~g~~~vLvaT~~~-------~~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 67 QEERLSRY------------------QQFKDFQRRILVATNLF-------GRGMDIERVNIAFNYDM 108 (172)
T ss_dssp HHHHHHHH------------------HHHHTTSCSEEEESSCC-------STTCCGGGCSEEEESSC
T ss_pred HHHHHHHH------------------HHHHCCCCcEEEECCch-------hcCcchhhCCEEEEECC
Confidence 55443222 2222 246899999321 23466777888776443
No 200
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=81.15 E-value=0.78 Score=41.87 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=16.4
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
...+++.||+|+|||..+..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 36799999999999986543
No 201
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=81.11 E-value=1.4 Score=44.31 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=26.0
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEccc
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt 65 (475)
.+.+++|.|+||||||...-..+...+........+++++=|.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 4689999999999999754443444444332222334444454
No 202
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=81.05 E-value=0.84 Score=42.66 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=14.4
Q ss_pred cEEEECCCCCchhHHhHH
Q 011884 26 DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~ 43 (475)
-++|.||||+|||..+..
T Consensus 5 ~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHH
Confidence 468899999999975433
No 203
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=81.05 E-value=1.5 Score=41.87 Aligned_cols=41 Identities=20% Similarity=0.046 Sum_probs=28.7
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
.+..++-++|.|++|+|||..++..+..... .+.+++|+..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~----~g~~vlyid~ 99 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDA 99 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEES
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEeC
Confidence 4445677999999999999877655544332 2346888875
No 204
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=81.02 E-value=0.84 Score=42.56 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=14.5
Q ss_pred cEEEECCCCCchhHHhHH
Q 011884 26 DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~ 43 (475)
-++|+||||+|||..+..
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 478899999999975533
No 205
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=81.01 E-value=0.92 Score=38.51 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=16.3
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
...+++.|++|||||.++-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45789999999999986544
No 206
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=80.95 E-value=1.2 Score=49.95 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=36.2
Q ss_pred EEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHhhhhhcccc
Q 011884 28 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 81 (475)
Q Consensus 28 li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 81 (475)
+|.|+.|||||.+.+--+...+... ..+.+++++||... .-++.+++.+.++
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~-~~~~~il~lVP~q~-TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA-PFGKPIIFLVPDQM-TFLMEYELAKTPD 56 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC-TTSSCEEEECCGGG-HHHHHHHHTCCSS
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEecCcc-cHHHHHHHHHhhh
Confidence 7899999999998766566655543 34468999999754 3345566655544
No 207
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=80.91 E-value=1.3 Score=44.94 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=28.0
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccH
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~ 66 (475)
...+++|.|.||||||.+.-..++..+........+++++=|-.
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 35789999999999997654444444443322334566665653
No 208
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=80.83 E-value=0.96 Score=39.48 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.8
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
.|.-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667889999999999854
No 209
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=80.80 E-value=1.2 Score=40.52 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.4
Q ss_pred CcEEEECCCCCchhHHhH
Q 011884 25 RDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~ 42 (475)
+.+++.||+|+|||..+.
T Consensus 105 n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 469999999999998654
No 210
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=80.79 E-value=1 Score=43.12 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=16.5
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
++.+++.||+|+|||..+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46799999999999985543
No 211
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=80.76 E-value=1.6 Score=40.43 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=23.9
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
.+..+++.||+|+|||+++...+. .+... .|.+|+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~-~l~~~--~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA-ISMLE--KHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH-HHHHT--TCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH-HHHHh--cCCEEEEEe
Confidence 356788999999999986554332 23221 234566664
No 212
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=80.66 E-value=0.72 Score=39.64 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=13.7
Q ss_pred CcEEEECCCCCchhHH
Q 011884 25 RDLCINSPTGSGKTLS 40 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~ 40 (475)
+-++|+||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999974
No 213
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=80.63 E-value=0.39 Score=42.48 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=14.1
Q ss_pred cEEEECCCCCchhHHh
Q 011884 26 DLCINSPTGSGKTLSY 41 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~ 41 (475)
.+++.||+|+|||..+
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999754
No 214
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=80.59 E-value=1.3 Score=37.34 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.6
Q ss_pred CCCcEEEECCCCCchhHHhH
Q 011884 23 FERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~ 42 (475)
.+..+++.|++|||||.++-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 45789999999999998543
No 215
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.47 E-value=0.91 Score=41.96 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=15.7
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
...+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 478999999999999754
No 216
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.46 E-value=1.1 Score=44.13 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=15.6
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
.+.+|+.||+|+|||+.+
T Consensus 215 prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeeEEECcCCCCHHHHH
Confidence 477999999999999754
No 217
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=80.43 E-value=0.9 Score=41.12 Aligned_cols=16 Identities=44% Similarity=0.289 Sum_probs=13.6
Q ss_pred EEEECCCCCchhHHhH
Q 011884 27 LCINSPTGSGKTLSYA 42 (475)
Q Consensus 27 ~li~a~tGsGKT~~~~ 42 (475)
++|.||||||||..+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6889999999998553
No 218
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.33 E-value=1.1 Score=43.44 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=16.0
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
..+.+|+.||+|+|||+.+
T Consensus 181 ~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCCEEEESCSSSSHHHHH
T ss_pred CCCceEEeCCCCCCHHHHH
Confidence 3478999999999999754
No 219
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=80.19 E-value=1.1 Score=38.73 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=15.8
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
.|.-+.+.||+|||||+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4677889999999999743
No 220
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=79.86 E-value=1.8 Score=41.86 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=28.0
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHH
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~ 67 (475)
.+.+++|.||||+|||...-. ++..+.. .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~---~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM---QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT---TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH---CCCEEEEEeCCcC
Confidence 467899999999999975444 4333332 3456888777654
No 221
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=79.82 E-value=0.83 Score=38.47 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.4
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
.-+++.|++|||||+++
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999854
No 222
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=79.80 E-value=1.1 Score=38.61 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=16.0
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
.|.-+.+.||+|||||+.+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999744
No 223
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=79.75 E-value=6.1 Score=33.49 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=16.3
Q ss_pred cccceEEEcccHHHHHHHhhh
Q 011884 55 RCLRALVVLPTRDLALQVNSA 75 (475)
Q Consensus 55 ~~~~vlil~Pt~~L~~q~~~~ 75 (475)
++.++||.++++.-+..+++.
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~ 65 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDF 65 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHH
Confidence 355799999999998885443
No 224
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=79.55 E-value=1.6 Score=41.87 Aligned_cols=47 Identities=17% Similarity=0.015 Sum_probs=30.8
Q ss_pred hhhcC--CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEccc
Q 011884 15 QETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (475)
Q Consensus 15 ~~~~~--~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt 65 (475)
..++. .+..+.-++|.|++|+|||..++..+..... .+.+|+|+...
T Consensus 63 D~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~----~g~~vlyi~~E 111 (366)
T 1xp8_A 63 DLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK----AGGTCAFIDAE 111 (366)
T ss_dssp HHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH----TTCCEEEEESS
T ss_pred HHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHH----CCCeEEEEECC
Confidence 34444 4555677999999999999866554444332 23468887743
No 225
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=79.17 E-value=1 Score=43.20 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=16.5
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
+..++|.||+|+|||..+-.
T Consensus 44 ~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 47899999999999975533
No 226
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=79.12 E-value=1.5 Score=41.84 Aligned_cols=48 Identities=19% Similarity=-0.036 Sum_probs=30.4
Q ss_pred hhhhcC--CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEccc
Q 011884 14 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (475)
Q Consensus 14 ~~~~~~--~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt 65 (475)
+..++. .+..|.-++|.||+|+|||..++..+.. +.. .+.+++|+...
T Consensus 49 LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~-~~~---~gg~VlyId~E 98 (356)
T 3hr8_A 49 IDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE-AQK---MGGVAAFIDAE 98 (356)
T ss_dssp HHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH-HHH---TTCCEEEEESS
T ss_pred HHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH-HHh---cCCeEEEEecc
Confidence 334444 4455677999999999999865443333 222 24468888654
No 227
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=79.11 E-value=6.7 Score=37.35 Aligned_cols=77 Identities=8% Similarity=0.243 Sum_probs=56.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcCC--CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-c-----ccCCCCCC
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRGMDVEG 397 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~~--~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-~-----~~GiDip~ 397 (475)
+.++||.+|++..+.++++.+.+... .+..+..++|+.+..+... .+..+..+|+|+|.- + ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 45899999999999999998887643 2578899999887654443 345567899999952 1 23456777
Q ss_pred CcEEEEec
Q 011884 398 VNNVVNYD 405 (475)
Q Consensus 398 ~~~Vv~~~ 405 (475)
+++||+-.
T Consensus 153 ~~~vViDE 160 (391)
T 1xti_A 153 IKHFILDE 160 (391)
T ss_dssp CSEEEECS
T ss_pred cCEEEEeC
Confidence 88777644
No 228
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.08 E-value=1 Score=40.57 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=15.2
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
...+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 356999999999999754
No 229
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=79.03 E-value=1.2 Score=41.23 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=14.9
Q ss_pred CcEEEECCCCCchhHHhH
Q 011884 25 RDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~ 42 (475)
..+++.||+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 568899999999998543
No 230
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=78.96 E-value=2.1 Score=37.89 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=18.6
Q ss_pred cEEEECCCCCchhHHhHHHHHHHH
Q 011884 26 DLCINSPTGSGKTLSYALPIVQTL 49 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~~~~~~l 49 (475)
++++.++.|+|||..++..+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 588999999999987766554443
No 231
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=78.95 E-value=1.3 Score=41.41 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.4
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
....++|.||+|+|||.++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4678999999999999754
No 232
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=78.94 E-value=2.1 Score=42.18 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=24.4
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
...+++.||+|+|||..+-. +...+... ..+.+++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~a-ia~~l~~~-~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQS-IGNYVVQN-EPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHH-HHHHHHHH-CCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHh-CCCCeEEEeeH
Confidence 46899999999999985533 33333322 12445666544
No 233
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=78.92 E-value=1 Score=42.34 Aligned_cols=18 Identities=28% Similarity=0.459 Sum_probs=15.5
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
.+.+++.||+|+|||..+
T Consensus 45 ~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 367999999999999754
No 234
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=78.88 E-value=1 Score=42.32 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=15.9
Q ss_pred CCcEEEECCCCCchhHHhH
Q 011884 24 ERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~ 42 (475)
...+++.||+|+|||..+-
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3679999999999998553
No 235
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=78.72 E-value=1.3 Score=36.98 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=15.2
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
+..+.+.||+|||||+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457899999999999854
No 236
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.67 E-value=1.3 Score=43.43 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=15.9
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
..+.+|+.||+|+|||..+
T Consensus 205 ~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCCEEEEESCTTTTHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3467999999999999754
No 237
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=78.62 E-value=0.9 Score=44.04 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=16.5
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
...+++.||+|+|||..+-.
T Consensus 148 ~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 47899999999999975533
No 238
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=78.54 E-value=1.3 Score=37.67 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=16.0
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
.+..+++.|++|||||.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567999999999999854
No 239
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.47 E-value=1.3 Score=43.45 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=16.0
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
..+.+|+.||+|+|||+.+
T Consensus 214 ~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3478999999999999754
No 240
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=78.43 E-value=0.45 Score=45.17 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.9
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999754
No 241
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=78.18 E-value=2.6 Score=36.88 Aligned_cols=76 Identities=9% Similarity=0.187 Sum_probs=48.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC------cccCCCCCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA------MTRGMDVEG 397 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~------~~~GiDip~ 397 (475)
.+.++||.+|+++.+.++++.+.... ..+..+..++|+.+..+.... + .+.+|+|+|.- ....+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--RDAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--CCCCEEEECHHHHHHHHHhCCcchhh
Confidence 45689999999999999999888764 235778888988765433322 2 23789999952 123466677
Q ss_pred CcEEEEec
Q 011884 398 VNNVVNYD 405 (475)
Q Consensus 398 ~~~Vv~~~ 405 (475)
+++||+-.
T Consensus 156 ~~~iViDE 163 (224)
T 1qde_A 156 IKMFILDE 163 (224)
T ss_dssp CCEEEEET
T ss_pred CcEEEEcC
Confidence 88777644
No 242
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=78.05 E-value=2.5 Score=36.44 Aligned_cols=35 Identities=17% Similarity=0.090 Sum_probs=28.2
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
..+++..++|.|||.+++..++..+.. +.+|+|+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~----G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH----GKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT----TCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEE
Confidence 579999999999999988877776643 45788884
No 243
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=78.02 E-value=1.5 Score=44.04 Aligned_cols=47 Identities=6% Similarity=-0.134 Sum_probs=31.8
Q ss_pred hhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 15 ~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
..++..+..|.-++|.|++|+|||..++-.+...... .+.+|++++-
T Consensus 233 D~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~---~g~~vl~~s~ 279 (503)
T 1q57_A 233 NDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA---MGKKVGLAML 279 (503)
T ss_dssp HHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT---SCCCEEEEES
T ss_pred hHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh---cCCcEEEEec
Confidence 3344556677889999999999998665555544332 1446888874
No 244
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=78.02 E-value=1.2 Score=37.30 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=13.6
Q ss_pred cEEEECCCCCchhHHh
Q 011884 26 DLCINSPTGSGKTLSY 41 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~ 41 (475)
-+++.|++|||||+.+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999854
No 245
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=77.96 E-value=1.8 Score=41.45 Aligned_cols=19 Identities=42% Similarity=0.553 Sum_probs=16.5
Q ss_pred CCCCcEEEECCCCCchhHH
Q 011884 22 LFERDLCINSPTGSGKTLS 40 (475)
Q Consensus 22 ~~~~~~li~a~tGsGKT~~ 40 (475)
..|..++|.||||||||+.
T Consensus 173 ~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HTTCCEEEEESSSSCHHHH
T ss_pred hcCCEEEEECCCCCCHHHH
Confidence 3578999999999999973
No 246
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=77.94 E-value=0.77 Score=38.69 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=15.9
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
.|.-+.+.||+|||||+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4677889999999999743
No 247
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=77.88 E-value=1.3 Score=36.94 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=14.0
Q ss_pred cEEEECCCCCchhHHhH
Q 011884 26 DLCINSPTGSGKTLSYA 42 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~ 42 (475)
.+++.|++|||||+++-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998543
No 248
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=77.88 E-value=1.5 Score=41.26 Aligned_cols=46 Identities=15% Similarity=-0.127 Sum_probs=28.7
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhh--hccccceEEEccc
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPT 65 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~--~~~~~~vlil~Pt 65 (475)
.+..|.-++|.||+|+|||..++..+....... +..+.+++|+.-.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 444567799999999999986655444322211 0013468888643
No 249
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=77.75 E-value=0.67 Score=47.91 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=24.3
Q ss_pred hhhhhhhhhcCCCCCCCcEEEECCCCCchhHHh
Q 011884 9 VQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~ 41 (475)
.|..+++.+...+..+..+++.||+|+|||..+
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHH
Confidence 345555555555556789999999999999754
No 250
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=77.70 E-value=16 Score=31.49 Aligned_cols=75 Identities=21% Similarity=0.223 Sum_probs=48.9
Q ss_pred cccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCc
Q 011884 55 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 134 (475)
Q Consensus 55 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (475)
.+.++||.|+++.-++.+++.+ .. .+..+..++|+.+
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L---------------------------------------~~----~~~~~~~lhg~~~ 66 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGL---------------------------------------LR----LGHPAQALHGDLS 66 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHH---------------------------------------HH----HTCCEEEECSSSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHH---------------------------------------HH----cCCCEEEEECCCC
Confidence 3458999999999888854432 22 1677888999877
Q ss_pred hHHHHHHHhhccccccCccCCchhHHHhhhc-CCcEEEeCchHHHHHhhcCCCcccCCccEEEE
Q 011884 135 IADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVV 197 (475)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVv 197 (475)
.......+ +.+.. ..+|+|+|.- +. .++.++.+++||.
T Consensus 67 ~~~r~~~~------------------~~f~~g~~~vlvaT~~-----~~--~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 67 QGERERVL------------------GAFRQGEVRVLVATDV-----AA--RGLDIPQVDLVVH 105 (212)
T ss_dssp HHHHHHHH------------------HHHHSSSCCEEEECTT-----TT--CSSSCCCBSEEEE
T ss_pred HHHHHHHH------------------HHHHCCCCeEEEecCh-----hh--cCCCCccCcEEEE
Confidence 65543322 22222 3689999921 12 3577788888884
No 251
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=77.41 E-value=1.3 Score=41.71 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=14.8
Q ss_pred cEEEECCCCCchhHHhHH
Q 011884 26 DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~ 43 (475)
.++|.||||||||..+..
T Consensus 7 ~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999985543
No 252
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=77.40 E-value=1.4 Score=42.17 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.0
Q ss_pred CCcEEEECCCCCchhHHhH
Q 011884 24 ERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~ 42 (475)
.+.+++.||+|+|||..+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4679999999999998553
No 253
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=77.38 E-value=2.6 Score=39.14 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=23.3
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
.+.-+.+.||+|+|||+..-. +..+... .+.+|.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~--Lag~l~~--~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGK--LAHRLKN--EGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHH--HHHHHHH--TTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHH--HHHHHHH--cCCeEEEEe
Confidence 456688999999999975433 3223222 244677665
No 254
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=77.19 E-value=1.6 Score=38.28 Aligned_cols=24 Identities=21% Similarity=-0.098 Sum_probs=18.8
Q ss_pred CCCCCCcEEEECCCCCchhHHhHH
Q 011884 20 PGLFERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~ 43 (475)
.+..|.-+.|.||+|+|||+.+..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHH
Confidence 455677899999999999975443
No 255
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=77.01 E-value=1.5 Score=42.16 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=16.4
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
..++++.||+|+|||..+-.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 46799999999999975533
No 256
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=76.91 E-value=1.6 Score=37.23 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=13.8
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
+-+.+.||+|+|||+..
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34678999999999743
No 257
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=76.79 E-value=1.4 Score=38.51 Aligned_cols=31 Identities=23% Similarity=-0.012 Sum_probs=22.4
Q ss_pred cchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHh
Q 011884 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~ 41 (475)
+..|..++..+ ..|.-+.+.||+|+|||+..
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHH
Confidence 34455555543 46788999999999999743
No 258
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=76.76 E-value=1.6 Score=38.32 Aligned_cols=20 Identities=30% Similarity=0.199 Sum_probs=15.9
Q ss_pred CCCCCcEEEECCCCCchhHH
Q 011884 21 GLFERDLCINSPTGSGKTLS 40 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~ 40 (475)
+..|.-+.|.||+|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 44578899999999999974
No 259
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=76.73 E-value=2.8 Score=39.03 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=22.9
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
+.-+.+.||+|+|||+..-. +..+... .+.+|++..
T Consensus 102 g~vi~lvG~nGsGKTTll~~--Lagll~~--~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAK--LGRYYQN--LGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHH--HHHHHHT--TTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHH--HHHHHHh--cCCEEEEEe
Confidence 46688899999999975433 3333332 244666664
No 260
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=76.71 E-value=1.5 Score=39.52 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.4
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
..+++.|++|||||+.+
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999854
No 261
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=76.53 E-value=0.99 Score=40.99 Aligned_cols=19 Identities=32% Similarity=0.544 Sum_probs=15.6
Q ss_pred CCcEEEECCCCCchhHHhH
Q 011884 24 ERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~ 42 (475)
...+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4569999999999998543
No 262
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=76.48 E-value=1.6 Score=37.78 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=15.5
Q ss_pred CCCcEEEECCCCCchhHH
Q 011884 23 FERDLCINSPTGSGKTLS 40 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~ 40 (475)
.++-++|.||+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 467789999999999974
No 263
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.47 E-value=1.6 Score=42.59 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=15.6
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
.+.+|+.||+|+|||+.+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 477999999999999754
No 264
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=76.42 E-value=1.6 Score=41.37 Aligned_cols=18 Identities=39% Similarity=0.292 Sum_probs=14.6
Q ss_pred cEEEECCCCCchhHHhHH
Q 011884 26 DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~ 43 (475)
-++|.||||||||..+..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 478999999999985533
No 265
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=76.36 E-value=1.4 Score=45.46 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=13.9
Q ss_pred cEEEECCCCCchhHH
Q 011884 26 DLCINSPTGSGKTLS 40 (475)
Q Consensus 26 ~~li~a~tGsGKT~~ 40 (475)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999973
No 266
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=76.36 E-value=1.5 Score=37.15 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=15.4
Q ss_pred CCcEEEECCCCCchhHHhH
Q 011884 24 ERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~ 42 (475)
+..+++.|++|||||+.+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998543
No 267
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=76.35 E-value=1.2 Score=37.68 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=16.1
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
+..+++.|++|||||+.+-.
T Consensus 4 g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 55689999999999985433
No 268
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=76.29 E-value=5.2 Score=35.20 Aligned_cols=76 Identities=12% Similarity=0.185 Sum_probs=52.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCC-CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-----ccc--CCCCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTR--GMDVE 396 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-----~~~--GiDip 396 (475)
.+.++||.+|+++.+.++++.+++... .+..+..++|+.+.......+ +..+|+|+|.- +.. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 456899999999999999999988753 357788889987654433322 46789999951 122 36667
Q ss_pred CCcEEEEec
Q 011884 397 GVNNVVNYD 405 (475)
Q Consensus 397 ~~~~Vv~~~ 405 (475)
+++++|+-.
T Consensus 171 ~~~~lViDE 179 (236)
T 2pl3_A 171 DLQMLVLDE 179 (236)
T ss_dssp TCCEEEETT
T ss_pred cccEEEEeC
Confidence 777777644
No 269
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=76.19 E-value=2.8 Score=40.39 Aligned_cols=32 Identities=25% Similarity=0.208 Sum_probs=23.6
Q ss_pred hcCCCCCCCcEEEECCCCCchhHHhHHHHHHHH
Q 011884 17 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 49 (475)
Q Consensus 17 ~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l 49 (475)
++-.+-.|+.+.|.||+|+|||..... +...+
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~-Iar~i 198 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQN-IAQSI 198 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHH-HHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHH-HHHHH
Confidence 455666799999999999999975533 33333
No 270
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=76.14 E-value=1.5 Score=38.90 Aligned_cols=32 Identities=16% Similarity=-0.058 Sum_probs=22.8
Q ss_pred hhhc-CCCCCCCcEEEECCCCCchhHHhHHHHH
Q 011884 15 QETI-GPGLFERDLCINSPTGSGKTLSYALPIV 46 (475)
Q Consensus 15 ~~~~-~~~~~~~~~li~a~tGsGKT~~~~~~~~ 46 (475)
..++ ..+..|.-+++.||+|+|||..+...+.
T Consensus 14 D~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 14 DKLLQGGIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp HHHTTTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3444 3455678899999999999986655443
No 271
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=75.97 E-value=0.9 Score=45.30 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=16.7
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
..++++.||+|+|||..+-.
T Consensus 201 ~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 46899999999999986544
No 272
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.85 E-value=1.3 Score=43.81 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=16.1
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
.-+.+|+.||+|+|||+.+
T Consensus 242 pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCSEEEECSCTTSSHHHHH
T ss_pred CCCceEeeCCCCCcHHHHH
Confidence 3478999999999999754
No 273
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=75.69 E-value=2.1 Score=39.22 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=14.3
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
+.+++.||+|+|||+.+
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 44999999999999743
No 274
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=75.43 E-value=1.6 Score=40.68 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=21.7
Q ss_pred hhhhhcCCCCCCCcEEEECCCCCchhHHh
Q 011884 13 VWQETIGPGLFERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 13 a~~~~~~~~~~~~~~li~a~tGsGKT~~~ 41 (475)
+++.+--.+..|..+.|.||+|+|||...
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHH
Confidence 44444445667889999999999999743
No 275
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=75.43 E-value=1.6 Score=41.13 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.5
Q ss_pred CcEEEECCCCCchhHHhH
Q 011884 25 RDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~ 42 (475)
.++++.||+|+|||..+-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 579999999999997543
No 276
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=75.39 E-value=1.6 Score=37.78 Aligned_cols=24 Identities=29% Similarity=0.152 Sum_probs=18.0
Q ss_pred cCCCCCCCcEEEECCCCCchhHHh
Q 011884 18 IGPGLFERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 18 ~~~~~~~~~~li~a~tGsGKT~~~ 41 (475)
++.+..+.-+.|.|++|||||+.+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHH
Confidence 344445667889999999999743
No 277
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=75.35 E-value=1.7 Score=37.41 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.7
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
.+..+++.||+|||||+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567889999999999754
No 278
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=75.30 E-value=1.6 Score=36.58 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.3
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
+..+++.|++|||||+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 567889999999999854
No 279
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=75.29 E-value=2.4 Score=40.03 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=15.6
Q ss_pred CCCcEEEECCCCCchhH
Q 011884 23 FERDLCINSPTGSGKTL 39 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~ 39 (475)
.|..+++.||||||||+
T Consensus 170 ~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HTCCEEEEESTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57889999999999997
No 280
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=75.21 E-value=2.1 Score=37.15 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=15.5
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
.+.-+.|.||+|||||+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567889999999999743
No 281
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=75.20 E-value=1.4 Score=40.46 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=22.5
Q ss_pred hcCCCCCCCcEEEECCCCCchhHHhHHHHH
Q 011884 17 TIGPGLFERDLCINSPTGSGKTLSYALPIV 46 (475)
Q Consensus 17 ~~~~~~~~~~~li~a~tGsGKT~~~~~~~~ 46 (475)
++..+..|.-++|.||+|+|||+.+...+.
T Consensus 23 ~lggl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 23 VLPNMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred eECCccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445555678899999999999986655443
No 282
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=74.86 E-value=1.7 Score=36.08 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=16.1
Q ss_pred CcEEEECCCCCchhHHhHH
Q 011884 25 RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~ 43 (475)
+++++.|+.|||||+++-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 6789999999999986543
No 283
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=74.76 E-value=1.6 Score=41.70 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=16.4
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
...+++.||+|+|||..+-.
T Consensus 117 ~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46799999999999985533
No 284
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=74.61 E-value=2 Score=36.86 Aligned_cols=19 Identities=21% Similarity=0.107 Sum_probs=16.0
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
.+..+++.|+.|||||+++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3567899999999999854
No 285
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=74.56 E-value=1.9 Score=37.46 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=16.2
Q ss_pred CCCCCcEEEECCCCCchhHHh
Q 011884 21 GLFERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~~ 41 (475)
+..|.-+.|.||+|+|||+..
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 345778899999999999743
No 286
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=74.42 E-value=1.7 Score=39.08 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.3
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
+.+++.||+|+|||..+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34999999999999744
No 287
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=73.93 E-value=1.8 Score=36.78 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=15.5
Q ss_pred CCcEEEECCCCCchhHHhH
Q 011884 24 ERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~ 42 (475)
+.-+++.|++|||||+.+-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998543
No 288
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=73.92 E-value=9.5 Score=37.24 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=54.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-----Cccc-CCCCCCC
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVEGV 398 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-----~~~~-GiDip~~ 398 (475)
+.++||.+|+++.+.++++.+++.. ..+..+..++|+.+..+.... +. ...+|+|+|. .+.. .+++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNEC---IT-RGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHH---HT-TCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHH---hh-cCCCEEEEChHHHHHHHHhCCcccccC
Confidence 4589999999999999999888865 235778889999876544332 22 3578999995 2222 3567778
Q ss_pred cEEEEec
Q 011884 399 NNVVNYD 405 (475)
Q Consensus 399 ~~Vv~~~ 405 (475)
+++|+-.
T Consensus 205 ~~lVlDE 211 (434)
T 2db3_A 205 RFVVLDE 211 (434)
T ss_dssp CEEEEET
T ss_pred CeEEEcc
Confidence 8877633
No 289
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=73.86 E-value=26 Score=29.65 Aligned_cols=76 Identities=12% Similarity=0.156 Sum_probs=48.3
Q ss_pred ccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCch
Q 011884 56 CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI 135 (475)
Q Consensus 56 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 135 (475)
+.++||.|+++.-+..+++.+ ... ++.+..++|+.+.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L---------------------------------------~~~----g~~~~~lhg~~~~ 90 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYL---------------------------------------LLK----GVEAVAIHGGKDQ 90 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHH---------------------------------------HHH----TCCEEEECTTSCH
T ss_pred CCCEEEEECCHHHHHHHHHHH---------------------------------------HHc----CCcEEEEeCCCCH
Confidence 347999999999998854432 221 6778888988766
Q ss_pred HHHHHHHhhccccccCccCCchhHHHhhh-cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcc
Q 011884 136 ADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 199 (475)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE 199 (475)
.+....+ +.+. ....|+|+| +. +. .+++++++++||.=+
T Consensus 91 ~~R~~~l------------------~~F~~g~~~vLvaT-~~----~~--~Gldi~~v~~VI~~d 130 (191)
T 2p6n_A 91 EERTKAI------------------EAFREGKKDVLVAT-DV----AS--KGLDFPAIQHVINYD 130 (191)
T ss_dssp HHHHHHH------------------HHHHHTSCSEEEEC-HH----HH--TTCCCCCCSEEEESS
T ss_pred HHHHHHH------------------HHHhcCCCEEEEEc-Cc----hh--cCCCcccCCEEEEeC
Confidence 5443222 1222 246899999 22 22 246677888887633
No 290
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=73.80 E-value=1.9 Score=37.20 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.1
Q ss_pred CcEEEECCCCCchhHHhH
Q 011884 25 RDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~ 42 (475)
.-++++|++|||||+++-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998543
No 291
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=73.80 E-value=4.4 Score=37.49 Aligned_cols=73 Identities=10% Similarity=0.170 Sum_probs=51.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcCC--CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-----c-c-cCCCCC
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----M-T-RGMDVE 396 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~~--~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-----~-~-~GiDip 396 (475)
+.++||.+|+++.+.++++.+..... .+..+...+|+....... ....+|+|+|+- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 34799999999999999998888753 246777777765432211 345689999962 1 2 357778
Q ss_pred CCcEEEEec
Q 011884 397 GVNNVVNYD 405 (475)
Q Consensus 397 ~~~~Vv~~~ 405 (475)
.+.++|+-.
T Consensus 235 ~l~~lVlDE 243 (300)
T 3fmo_B 235 KIKVFVLDE 243 (300)
T ss_dssp GCSEEEETT
T ss_pred hceEEEEeC
Confidence 888887644
No 292
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=73.79 E-value=3.7 Score=39.19 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=23.3
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
.+.-+.+.||+|+|||+..-. +.. +... .+.+|++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~-Lag-~l~~--~~G~V~l~g 192 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGK-LAH-RLKN--EGTKVLMAA 192 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHH-HHH-HHHH--TTCCEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHH-HHh-hccc--cCCEEEEec
Confidence 356688999999999975433 333 3222 244676664
No 293
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=73.73 E-value=1.3 Score=41.48 Aligned_cols=24 Identities=17% Similarity=-0.058 Sum_probs=18.0
Q ss_pred CCCcEEEECCCCCchhHHhHHHHH
Q 011884 23 FERDLCINSPTGSGKTLSYALPIV 46 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~ 46 (475)
.+..+++.||+|+|||..++..+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 445679999999999986655443
No 294
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.71 E-value=1 Score=41.94 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=15.3
Q ss_pred CcEEEECCCCCchhHHhHH
Q 011884 25 RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~ 43 (475)
.++++.||+|+|||..+..
T Consensus 43 ~~~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHC 61 (323)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 3599999999999975433
No 295
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=73.22 E-value=2.3 Score=36.99 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=14.5
Q ss_pred cEEEECCCCCchhHHhHH
Q 011884 26 DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~ 43 (475)
.+++.||+|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999985533
No 296
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=73.16 E-value=1.3 Score=43.63 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.6
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
.+++++.||+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999854
No 297
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=73.13 E-value=2 Score=36.43 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.3
Q ss_pred cEEEECCCCCchhHHh
Q 011884 26 DLCINSPTGSGKTLSY 41 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~ 41 (475)
.+.+.||+|+|||+..
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999743
No 298
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=73.02 E-value=2.2 Score=35.75 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=14.9
Q ss_pred cEEEECCCCCchhHHhHH
Q 011884 26 DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~ 43 (475)
.++|.|++|||||.++-.
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 588999999999985533
No 299
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=73.00 E-value=1.8 Score=40.43 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=15.5
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 367999999999999754
No 300
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=72.91 E-value=1.9 Score=41.70 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=14.4
Q ss_pred cEEEECCCCCchhHHhHH
Q 011884 26 DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~ 43 (475)
-++|.||||+|||..+..
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 367899999999975543
No 301
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=72.82 E-value=0.85 Score=43.31 Aligned_cols=36 Identities=25% Similarity=0.134 Sum_probs=23.7
Q ss_pred ccchhhhhhhhhc----CCCCCCC--cEEEECCCCCchhHHh
Q 011884 6 LFPVQVAVWQETI----GPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 6 ~~~~Q~~a~~~~~----~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
+..-|.+.++.+. +.+..|. .++..|.||||||++.
T Consensus 71 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 71 ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3445666665533 3334464 4778999999999874
No 302
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=72.80 E-value=2.2 Score=37.61 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=16.0
Q ss_pred CCCCCCcEEEECCCCCchhHH
Q 011884 20 PGLFERDLCINSPTGSGKTLS 40 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~ 40 (475)
.+..|.-+.|.||+|+|||+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHH
Confidence 344678899999999999974
No 303
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=72.79 E-value=1.8 Score=38.15 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=15.3
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
...+++.|++|||||+.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467899999999999854
No 304
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=72.77 E-value=2 Score=37.42 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=14.5
Q ss_pred cEEEECCCCCchhHHhHH
Q 011884 26 DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~ 43 (475)
.+++.||+|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999985433
No 305
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=72.72 E-value=2.1 Score=36.42 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.4
Q ss_pred cEEEECCCCCchhHHh
Q 011884 26 DLCINSPTGSGKTLSY 41 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~ 41 (475)
-+++.||+|+|||+.+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4678999999999854
No 306
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=72.46 E-value=1.1 Score=42.70 Aligned_cols=36 Identities=28% Similarity=0.166 Sum_probs=23.8
Q ss_pred ccchhhhhhhhh----cCCCCCCC--cEEEECCCCCchhHHh
Q 011884 6 LFPVQVAVWQET----IGPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 6 ~~~~Q~~a~~~~----~~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
+..-|.+.++.+ ++.+..|. .++..|.||||||++.
T Consensus 60 ~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 60 EDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred cCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 344566665553 33344564 4777999999999875
No 307
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=72.32 E-value=1.6 Score=40.37 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.3
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
.-++++||+|||||+.+
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999854
No 308
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=72.27 E-value=17 Score=34.86 Aligned_cols=75 Identities=12% Similarity=0.135 Sum_probs=53.1
Q ss_pred CeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-----Ccc-cCCCCCCCc
Q 011884 327 EKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT-RGMDVEGVN 399 (475)
Q Consensus 327 ~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-----~~~-~GiDip~~~ 399 (475)
.++||.+|+++.+.++++.+++.. ..+..+..++|+.+..+... .+. ...+|+|+|. .+. ..+++..++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~-~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLE-RGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHT-TCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---Hhh-CCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 479999999999999999988764 34578888999877654332 333 3578999996 122 235667788
Q ss_pred EEEEec
Q 011884 400 NVVNYD 405 (475)
Q Consensus 400 ~Vv~~~ 405 (475)
+||+-.
T Consensus 178 ~iViDE 183 (417)
T 2i4i_A 178 YLVLDE 183 (417)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 777643
No 309
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=72.23 E-value=1.4 Score=41.57 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=15.4
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 467999999999999754
No 310
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=72.15 E-value=2.3 Score=37.29 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=16.1
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
...+++.|++|||||+.+-.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46789999999999985433
No 311
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=72.08 E-value=2.6 Score=36.70 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=14.5
Q ss_pred cEEEECCCCCchhHHhHH
Q 011884 26 DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~ 43 (475)
.+++.||+||||++.+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468899999999986544
No 312
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=72.06 E-value=2 Score=42.47 Aligned_cols=19 Identities=26% Similarity=0.428 Sum_probs=15.8
Q ss_pred CCcEEEECCCCCchhHHhH
Q 011884 24 ERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~ 42 (475)
.+.+++.||+|+|||..+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3679999999999997543
No 313
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=72.02 E-value=2.5 Score=35.67 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=15.2
Q ss_pred CcEEEECCCCCchhHHhHH
Q 011884 25 RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~ 43 (475)
..+++.|++|||||.++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3588999999999986533
No 314
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=71.99 E-value=2.1 Score=36.91 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=16.7
Q ss_pred CCCcEEEECCCCCchhHHhHH
Q 011884 23 FERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~ 43 (475)
.+.-+.+.||+|||||+++-.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456788999999999985433
No 315
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=71.90 E-value=2.7 Score=39.88 Aligned_cols=52 Identities=10% Similarity=-0.117 Sum_probs=31.0
Q ss_pred hhhhcC-CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhh--hccccceEEEccc
Q 011884 14 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPT 65 (475)
Q Consensus 14 ~~~~~~-~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~--~~~~~~vlil~Pt 65 (475)
+..++. .+..|.-++|.||+|+|||..++..+....... +..+.+++|+...
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 334443 445567789999999999986655444322210 0024468888643
No 316
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=71.87 E-value=2.2 Score=36.22 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=14.8
Q ss_pred CcEEEECCCCCchhHHhH
Q 011884 25 RDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~ 42 (475)
..+++.|++|||||+.+-
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999998553
No 317
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=71.86 E-value=3.7 Score=38.23 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=22.8
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
+.-+++.||+|+|||+.+...+ ..+.. .+.+|+++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA-~~l~~---~g~kV~lv~ 139 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA-KMFVD---EGKSVVLAA 139 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH-HHHHH---TTCCEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHH-HHHHh---cCCEEEEEc
Confidence 3558899999999998655433 22322 234566654
No 318
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=71.74 E-value=3.1 Score=40.78 Aligned_cols=35 Identities=20% Similarity=0.103 Sum_probs=23.3
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
.-+++.||+|+|||+++...+ ..+.. .+.+|+++.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA-~~l~~---~G~kVllv~ 132 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA-YFYKK---RGYKVGLVA 132 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH-HHHHH---TTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHH---cCCeEEEEe
Confidence 458889999999998765533 33333 344676665
No 319
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=71.51 E-value=28 Score=33.74 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=73.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCC-CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-cc-----cCCCCCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MT-----RGMDVEG 397 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-~~-----~GiDip~ 397 (475)
.+.++||.+|++..+.+.++.+.+... ....+..+||+....++..... ..+|+|+|.- +. ..+....
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 577999999999999999999988742 3458899999988776544332 4689999852 21 2356667
Q ss_pred CcEEEEecCCC--CHHHHHHHhhhccccCCCCcEEEEee--chhHHHHHHHHHHhc
Q 011884 398 VNNVVNYDKPA--YIKTYIHRAGRTARAGQLGRCFTLLH--KDEVKRFKKLLQKAD 449 (475)
Q Consensus 398 ~~~Vv~~~~~~--s~~~~~Q~~GR~~R~~~~g~~~~~~~--~~~~~~~~~l~~~~~ 449 (475)
+++||+=.... +...+.+...+..+.......+.+.. ..+...+.++...+.
T Consensus 126 ~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~ 181 (494)
T 1wp9_A 126 VSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLG 181 (494)
T ss_dssp CSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHHHTT
T ss_pred ceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCCCCcHHHHHHHHhcC
Confidence 88877754331 11133333333322222334444432 234566777777664
No 320
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=71.47 E-value=1.2 Score=42.13 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=21.9
Q ss_pred cchhhhhhhh---hcCCCCCCC--cEEEECCCCCchhHHh
Q 011884 7 FPVQVAVWQE---TIGPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 7 ~~~Q~~a~~~---~~~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
..-|.+.++. ++.....|. .++..|.||||||++.
T Consensus 59 ~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 59 QASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp TCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CCCcHhHHHHHHHHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4445555443 222333464 4777999999999865
No 321
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=71.40 E-value=2.2 Score=36.34 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.3
Q ss_pred CCCcEEEECCCCCchhHHhH
Q 011884 23 FERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~ 42 (475)
.+..+++.|++|||||+++-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35678999999999998543
No 322
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=71.35 E-value=2.4 Score=40.39 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=15.9
Q ss_pred CCcEEEECCCCCchhHHhH
Q 011884 24 ERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~ 42 (475)
+..++|.||+|+|||..+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 323
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=71.32 E-value=1 Score=42.98 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=14.3
Q ss_pred cEEEECCCCCchhHHhH
Q 011884 26 DLCINSPTGSGKTLSYA 42 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~ 42 (475)
.+++.||+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999997553
No 324
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=71.30 E-value=3.9 Score=38.47 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=22.3
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
+.-+.+.||+|+|||+..-. +.. +... .+.++++..
T Consensus 129 g~vi~lvG~nGaGKTTll~~-Lag-~l~~--~~g~V~l~g 164 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAK-LAN-WLKN--HGFSVVIAA 164 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHH-HHH-HHHH--TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHH-HHH-HHHh--cCCEEEEEe
Confidence 45688999999999975433 222 3222 234566653
No 325
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=71.28 E-value=2.5 Score=37.04 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=16.0
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
+..+++.|++|||||+.+-.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45689999999999985433
No 326
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=71.09 E-value=2.1 Score=42.26 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=15.6
Q ss_pred CcEEEECCCCCchhHHhHH
Q 011884 25 RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~ 43 (475)
..+++.||+|+|||..+-.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 4699999999999985533
No 327
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=70.98 E-value=0.83 Score=48.65 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.2
Q ss_pred cEEEECCCCCchhHHhHH
Q 011884 26 DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~ 43 (475)
++++.||||+|||..+-.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~a 540 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARA 540 (758)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 599999999999986543
No 328
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=70.97 E-value=2.8 Score=36.26 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=16.9
Q ss_pred CCCcEEEECCCCCchhHHhHH
Q 011884 23 FERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~ 43 (475)
.+.-+++.|+.|||||+++-.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~ 29 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKL 29 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHH
Confidence 456789999999999986543
No 329
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=70.97 E-value=2.2 Score=38.91 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.3
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
..+++.||+|+|||..+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 34999999999999744
No 330
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=70.93 E-value=1.7 Score=41.31 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=22.4
Q ss_pred chhhhhhhh---hcCCCCCCCc--EEEECCCCCchhHHhH
Q 011884 8 PVQVAVWQE---TIGPGLFERD--LCINSPTGSGKTLSYA 42 (475)
Q Consensus 8 ~~Q~~a~~~---~~~~~~~~~~--~li~a~tGsGKT~~~~ 42 (475)
.-|.+.++. ++.....|.+ ++..|.||||||++.+
T Consensus 64 ~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 64 DTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp CCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 345444433 3444455644 7779999999998753
No 331
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=70.73 E-value=2.7 Score=34.94 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=14.7
Q ss_pred CcEEEECCCCCchhHHhH
Q 011884 25 RDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~ 42 (475)
..+++.|++|||||.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357899999999998543
No 332
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=70.70 E-value=2.1 Score=36.23 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=14.0
Q ss_pred cEEEECCCCCchhHHhH
Q 011884 26 DLCINSPTGSGKTLSYA 42 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~ 42 (475)
.+++.|++|||||+.+-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998543
No 333
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=70.69 E-value=4.4 Score=37.95 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=23.3
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
++-+++.+++|+|||+++...+ ..+.. .+.+|+++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA-~~l~~---~g~kVllid 140 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMA-NYYAE---LGYKVLIAA 140 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHH-HHHHH---TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHH---CCCeEEEEe
Confidence 4568889999999998654433 22322 244677664
No 334
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=70.64 E-value=5.2 Score=33.57 Aligned_cols=34 Identities=21% Similarity=-0.018 Sum_probs=21.0
Q ss_pred cEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
-+.+.|+.|||||... ..++..+... +.++-++.
T Consensus 6 ~i~i~G~sGsGKTTl~-~~L~~~l~~~---g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM-EKWVAAAVRE---GWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHHHT---TCCEEEEE
T ss_pred EEEEECCCCCCHHHHH-HHHHHhhHhc---CCeeeEEE
Confidence 4678999999999754 3344444432 33454444
No 335
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=70.62 E-value=2.8 Score=36.05 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=15.4
Q ss_pred CCcEEEECCCCCchhHHhH
Q 011884 24 ERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~ 42 (475)
+..+++.|++|||||+++-
T Consensus 20 ~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568899999999998543
No 336
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=70.55 E-value=1.9 Score=38.08 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=11.7
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
.|.-+.+.||+|+|||++.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567889999999999754
No 337
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=70.08 E-value=3.5 Score=36.21 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=15.4
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
.+-+++.||+||||++.+-.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 35577899999999986543
No 338
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=70.02 E-value=1.4 Score=42.57 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=24.0
Q ss_pred ccchhhhhhhhh----cCCCCCCCc--EEEECCCCCchhHHh
Q 011884 6 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 41 (475)
Q Consensus 6 ~~~~Q~~a~~~~----~~~~~~~~~--~li~a~tGsGKT~~~ 41 (475)
+..-|.+.+... ++.+..|.+ ++..|.||||||++.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 445576666543 333445644 777999999999875
No 339
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=69.77 E-value=2.7 Score=34.77 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=13.7
Q ss_pred cEEEECCCCCchhHHh
Q 011884 26 DLCINSPTGSGKTLSY 41 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~ 41 (475)
.+++.|++|||||+++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999854
No 340
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=69.32 E-value=2.4 Score=35.90 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=14.6
Q ss_pred CcEEEECCCCCchhHHhH
Q 011884 25 RDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~ 42 (475)
..+++.|++|||||+++-
T Consensus 7 ~~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 357899999999998543
No 341
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=69.31 E-value=3 Score=34.08 Aligned_cols=16 Identities=31% Similarity=0.179 Sum_probs=13.5
Q ss_pred CcEEEECCCCCchhHH
Q 011884 25 RDLCINSPTGSGKTLS 40 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~ 40 (475)
.-.+|.||+|+|||..
T Consensus 24 g~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3468899999999975
No 342
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=69.30 E-value=2 Score=38.76 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=22.5
Q ss_pred hhhhhhcCCCCC---CCcEEEECCCCCchhHHhHH
Q 011884 12 AVWQETIGPGLF---ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 12 ~a~~~~~~~~~~---~~~~li~a~tGsGKT~~~~~ 43 (475)
.+++.+--.+.. +..+.|.|++|+|||++.-.
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHH
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHH
Confidence 344444344455 88999999999999985433
No 343
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=69.29 E-value=4.7 Score=40.19 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=22.9
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEE
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 62 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil 62 (475)
.+.-+.+.|++|+|||+..-. +...+ .. .+.+|++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~-LAgll-~~--~~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGK-LARQF-EQ--QGKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHH-HHHHH-HH--TTCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHH-HHHHh-hh--cCCeEEEe
Confidence 345688999999999975433 33333 22 24467776
No 344
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=69.29 E-value=4.7 Score=44.53 Aligned_cols=79 Identities=10% Similarity=0.254 Sum_probs=59.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCC-Cce----eeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-CcccCCC-CCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRI----KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMD-VEG 397 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~-~~~----~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-~~~~GiD-ip~ 397 (475)
.+.++||.+|+++.+.++++.++.... .+. .+..++|+.+..++.+..+.+.+ .+|+|+|+ .+..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 467899999999999999999987642 345 78999999998888777777766 89999996 1211111 556
Q ss_pred CcEEEEec
Q 011884 398 VNNVVNYD 405 (475)
Q Consensus 398 ~~~Vv~~~ 405 (475)
+++||+-.
T Consensus 176 l~~lViDE 183 (1054)
T 1gku_B 176 FDFIFVDD 183 (1054)
T ss_dssp CSEEEESC
T ss_pred CCEEEEeC
Confidence 77777643
No 345
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=69.23 E-value=1.8 Score=41.23 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=18.6
Q ss_pred hcCCCCCCC--cEEEECCCCCchhHHhH
Q 011884 17 TIGPGLFER--DLCINSPTGSGKTLSYA 42 (475)
Q Consensus 17 ~~~~~~~~~--~~li~a~tGsGKT~~~~ 42 (475)
++.....|. .++..|.||||||++..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 344445574 47779999999998763
No 346
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=69.22 E-value=1.3 Score=42.20 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=23.4
Q ss_pred ccchhhhhhhh----hcCCCCCCC--cEEEECCCCCchhHHh
Q 011884 6 LFPVQVAVWQE----TIGPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 6 ~~~~Q~~a~~~----~~~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
+..-|.+.++. +++.+..|. .++..|.||||||++.
T Consensus 57 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 57 MSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp TTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEe
Confidence 34456665553 333444564 4777999999999865
No 347
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=69.22 E-value=3.2 Score=34.36 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=16.3
Q ss_pred CCCCCcEEEECCCCCchhHH
Q 011884 21 GLFERDLCINSPTGSGKTLS 40 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~ 40 (475)
+..|.-+.+.||.|+|||..
T Consensus 30 i~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34567788999999999963
No 348
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=69.15 E-value=2.8 Score=40.30 Aligned_cols=22 Identities=27% Similarity=0.125 Sum_probs=18.0
Q ss_pred CCCCCCcEEEECCCCCchhHHh
Q 011884 20 PGLFERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~ 41 (475)
.+..++.+++.||+|+|||..+
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHH
Confidence 4556788999999999999744
No 349
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=69.07 E-value=1.6 Score=46.44 Aligned_cols=34 Identities=18% Similarity=0.021 Sum_probs=22.2
Q ss_pred hhhhhhhhcCCCC--CCCcEEEECCCCCchhHHhHH
Q 011884 10 QVAVWQETIGPGL--FERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 10 Q~~a~~~~~~~~~--~~~~~li~a~tGsGKT~~~~~ 43 (475)
|...+..++..+. ...++++.||+|+|||.++-.
T Consensus 185 ~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHH
Confidence 3444444444332 346899999999999986544
No 350
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=69.07 E-value=2.4 Score=36.18 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.2
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
+.-+++.|++|||||+++
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456889999999999854
No 351
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=69.04 E-value=3 Score=36.88 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.2
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
+..+++.|++|||||+.+-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46799999999999985543
No 352
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=68.92 E-value=3.2 Score=35.54 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=14.6
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
|..+.+.||+|+|||+..
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 346789999999999754
No 353
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=68.91 E-value=2.6 Score=36.33 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=15.8
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
+.-+++.|++|||||+.+-.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~ 23 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATL 23 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 45688999999999985533
No 354
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=68.91 E-value=3.5 Score=48.23 Aligned_cols=44 Identities=18% Similarity=0.044 Sum_probs=31.4
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHH
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~ 67 (475)
.+..++.++++||+|+|||..+...+.+... .+.+++|+.....
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~----~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAEHA 1466 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHT----TTCCEEEECTTSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEEEcccc
Confidence 3445789999999999999877665554432 3457888886533
No 355
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=68.82 E-value=4.2 Score=41.03 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=28.1
Q ss_pred hhhhhhhcC-CCCCCCcEEEECCCCCchhHHhHHHHHHHHhh
Q 011884 11 VAVWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSN 51 (475)
Q Consensus 11 ~~a~~~~~~-~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~ 51 (475)
..++..+.- .+..|..++|.||+|+|||+.+...++.-+..
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 345555554 56678889999999999998655533444443
No 356
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=68.70 E-value=3 Score=41.72 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=16.4
Q ss_pred CCCcEEEECCCCCchhHHhH
Q 011884 23 FERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~ 42 (475)
....+++.||+|+|||.++-
T Consensus 237 ~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHH
Confidence 34679999999999998543
No 357
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=68.59 E-value=3.7 Score=38.43 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=21.5
Q ss_pred cEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEccc
Q 011884 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt 65 (475)
-++|.|+.|||||+.. ..++. . ..+.++.++.|.
T Consensus 6 v~~i~G~~GaGKTTll-~~l~~----~-~~~~~~aVi~~d 39 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLL-RHILN----E-QHGYKIAVIENE 39 (318)
T ss_dssp EEEEEESSSSSCHHHH-HHHHH----S-CCCCCEEEECSS
T ss_pred EEEEEecCCCCHHHHH-HHHHh----h-cCCCcEEEEEec
Confidence 4688999999999732 22222 1 134467777765
No 358
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=68.27 E-value=2.9 Score=35.76 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=13.5
Q ss_pred cEEEECCCCCchhHHh
Q 011884 26 DLCINSPTGSGKTLSY 41 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~ 41 (475)
.+++.|++|||||+.+
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4689999999999854
No 359
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=68.19 E-value=1.2 Score=42.63 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=22.0
Q ss_pred hhhhhhhhh----cCCCCCCC--cEEEECCCCCchhHHh
Q 011884 9 VQVAVWQET----IGPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 9 ~Q~~a~~~~----~~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
-|.+.++.+ ++.+..|. .++..|.||||||++.
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 366555443 33444564 4777999999999875
No 360
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=68.12 E-value=3.3 Score=36.25 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=14.8
Q ss_pred CcEEEECCCCCchhHHhH
Q 011884 25 RDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~ 42 (475)
..+.|.||+|||||+++-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998543
No 361
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=68.12 E-value=3 Score=35.85 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=14.3
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
..+++.|++|||||+++
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45888999999999854
No 362
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=68.10 E-value=2.3 Score=37.91 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=16.8
Q ss_pred CCCCCCcEEEECCCCCchhH
Q 011884 20 PGLFERDLCINSPTGSGKTL 39 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~ 39 (475)
.+..|.-+.|.||+|||||+
T Consensus 27 ~i~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp EECTTCEEEEECSTTSSHHH
T ss_pred EEcCCCEEEEECCCCCcHHH
Confidence 34467889999999999997
No 363
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=68.03 E-value=2.9 Score=35.43 Aligned_cols=21 Identities=24% Similarity=0.115 Sum_probs=16.5
Q ss_pred CCCcEEEECCCCCchhHHhHH
Q 011884 23 FERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~ 43 (475)
.+..+++.|++|||||+.+-.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 356688999999999985543
No 364
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=68.00 E-value=2.9 Score=35.15 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=16.0
Q ss_pred CCCcEEEECCCCCchhHHhH
Q 011884 23 FERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~ 42 (475)
.+..+++.|+.|||||+++-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35668899999999998543
No 365
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=67.93 E-value=3.7 Score=39.86 Aligned_cols=45 Identities=9% Similarity=-0.209 Sum_probs=27.6
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhh--hccccceEEEcc
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLP 64 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~--~~~~~~vlil~P 64 (475)
.+..|.-+.|.||+|+|||..+...++..+... +..+.+++++.-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 444567799999999999986654333332211 112345777753
No 366
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=67.82 E-value=1.4 Score=41.56 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=23.6
Q ss_pred ccchhhhhhhhh----cCCCCCCC--cEEEECCCCCchhHHh
Q 011884 6 LFPVQVAVWQET----IGPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 6 ~~~~Q~~a~~~~----~~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
+..-|.+.++.+ ++.+..|. .++..|.||||||++.
T Consensus 54 ~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 54 SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 344566655543 33344564 4777999999999875
No 367
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=67.81 E-value=2.6 Score=36.66 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=14.1
Q ss_pred cEEEECCCCCchhHHhH
Q 011884 26 DLCINSPTGSGKTLSYA 42 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~ 42 (475)
.+++.|++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998543
No 368
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.76 E-value=2.7 Score=42.36 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=15.9
Q ss_pred CcEEEECCCCCchhHHhHH
Q 011884 25 RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~ 43 (475)
+.++++||+|+|||..+..
T Consensus 78 ~~lLL~GppGtGKTtla~~ 96 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHL 96 (516)
T ss_dssp SEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 6799999999999985543
No 369
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=67.70 E-value=3.1 Score=35.25 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=14.0
Q ss_pred EEEECCCCCchhHHhHH
Q 011884 27 LCINSPTGSGKTLSYAL 43 (475)
Q Consensus 27 ~li~a~tGsGKT~~~~~ 43 (475)
+++.|+.|||||+++-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999986533
No 370
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=67.32 E-value=1.7 Score=41.45 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=23.4
Q ss_pred cchhhhhhhhh----cCCCCCCC--cEEEECCCCCchhHHh
Q 011884 7 FPVQVAVWQET----IGPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 7 ~~~Q~~a~~~~----~~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
..-|.+.++.+ ++.+..|. .++..|.||||||++.
T Consensus 83 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 83 TSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 34566665543 33444564 4777999999999875
No 371
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=67.09 E-value=14 Score=35.30 Aligned_cols=77 Identities=9% Similarity=0.132 Sum_probs=53.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcCC-CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-----Ccc-cCCCCCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT-RGMDVEG 397 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-----~~~-~GiDip~ 397 (475)
.+.++||.+|++..+.++++.+++... .+..+...+|+....+... . ..+..+|+|+|. .+. ...++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~-~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---R-LNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---H-TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---H-hcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 355899999999999999999887653 3577888888876543221 1 235678999994 122 3356777
Q ss_pred CcEEEEec
Q 011884 398 VNNVVNYD 405 (475)
Q Consensus 398 ~~~Vv~~~ 405 (475)
+++||+-.
T Consensus 164 ~~~vIiDE 171 (400)
T 1s2m_A 164 CSLFIMDE 171 (400)
T ss_dssp CCEEEEES
T ss_pred CCEEEEeC
Confidence 88877644
No 372
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=66.96 E-value=3.2 Score=35.74 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=13.3
Q ss_pred cEEEECCCCCchhHHh
Q 011884 26 DLCINSPTGSGKTLSY 41 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~ 41 (475)
.+.+.||+|||||+++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999854
No 373
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=66.91 E-value=38 Score=25.45 Aligned_cols=46 Identities=20% Similarity=0.326 Sum_probs=36.3
Q ss_pred EEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcC
Q 011884 330 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 378 (475)
Q Consensus 330 lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g 378 (475)
++|.+.-+-...+.+.++..+ ..+..++++.....|.+-++.|...
T Consensus 6 vvfssdpeilkeivreikrqg---vrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKRQG---VRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEESCHHHHHHHHHHHHHTT---CEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEecCCHHHHHHHHHHHHhCC---eEEEEEecCchHHHHHHHHHHHHHc
Confidence 566666667777777777655 8899999998888888999999864
No 374
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=66.83 E-value=2.7 Score=35.35 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=11.4
Q ss_pred CCcEEEECCCCCchhHHhH
Q 011884 24 ERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~ 42 (475)
+.-+++.|++|||||+++-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998543
No 375
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=66.57 E-value=2.9 Score=36.51 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=15.8
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
+..+++.|++|||||+.+-.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 35689999999999985433
No 376
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=66.54 E-value=5.5 Score=39.04 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=23.5
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
..+++.|++|+|||..+...+.. +... +.+|+++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~-l~~~---G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY-IQKR---GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH-HHHH---HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHHc---CCeEEEEe
Confidence 46889999999999866553333 3322 34677765
No 377
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=66.53 E-value=3.4 Score=35.17 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=14.0
Q ss_pred EEEECCCCCchhHHhHH
Q 011884 27 LCINSPTGSGKTLSYAL 43 (475)
Q Consensus 27 ~li~a~tGsGKT~~~~~ 43 (475)
+++.|+.|||||+++-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999986543
No 378
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=66.50 E-value=2.8 Score=36.31 Aligned_cols=18 Identities=33% Similarity=0.161 Sum_probs=14.7
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
+.-+.|.||+|||||+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 456789999999999753
No 379
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=66.37 E-value=3.5 Score=35.05 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=21.8
Q ss_pred EEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHH
Q 011884 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (475)
Q Consensus 27 ~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L 68 (475)
++|.|++|||||.-+...+ .. +.+++++.+....
T Consensus 2 ilV~Gg~~SGKS~~A~~la----~~----~~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI----GD----APQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH----CS----CSSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHH----hc----CCCeEEEecCCCC
Confidence 5899999999997433211 11 3358888875543
No 380
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=66.32 E-value=1 Score=48.01 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.8
Q ss_pred cEEEECCCCCchhHHhH
Q 011884 26 DLCINSPTGSGKTLSYA 42 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~ 42 (475)
++++.||||+|||..+-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 69999999999998654
No 381
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=66.27 E-value=6 Score=37.05 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=13.3
Q ss_pred cEEEECCCCCchhHHh
Q 011884 26 DLCINSPTGSGKTLSY 41 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~ 41 (475)
-+.|.||+|||||+.+
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999754
No 382
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=66.04 E-value=3.3 Score=37.41 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=15.7
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
..-++++|++|||||+.+-.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHH
Confidence 34588999999999985533
No 383
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=66.01 E-value=1.5 Score=41.64 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=23.4
Q ss_pred ccchhhhhhhhh----cCCCCCCC--cEEEECCCCCchhHHh
Q 011884 6 LFPVQVAVWQET----IGPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 6 ~~~~Q~~a~~~~----~~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
+..-|.+.++.+ ++.+..|. .++..|.||||||++.
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 344566665543 23334564 4777999999999865
No 384
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=65.84 E-value=4.3 Score=41.15 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=16.8
Q ss_pred CCCcEEEECCCCCchhHHhH
Q 011884 23 FERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~ 42 (475)
.+..+++.||+|+|||..+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56789999999999997543
No 385
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=65.79 E-value=3.5 Score=35.67 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=16.8
Q ss_pred CCCcEEEECCCCCchhHHhHH
Q 011884 23 FERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~ 43 (475)
.+.-+++.|+.|||||+++-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356789999999999986543
No 386
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=65.78 E-value=3.3 Score=39.37 Aligned_cols=26 Identities=19% Similarity=-0.130 Sum_probs=19.5
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHH
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~ 45 (475)
.+..|.-+.|.||+|+|||..+...+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34456778999999999998655433
No 387
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=65.77 E-value=3.7 Score=35.63 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=16.4
Q ss_pred CCCcEEEECCCCCchhHHhH
Q 011884 23 FERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~ 42 (475)
.+..+++.|++|||||..+-
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46778899999999997543
No 388
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=65.70 E-value=3.4 Score=36.89 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=16.1
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
...+++.||+|||||+++-.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45689999999999985533
No 389
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=65.56 E-value=3.1 Score=39.76 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=16.1
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
...+++.||+|+|||..+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~ 64 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKY 64 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 35799999999999976533
No 390
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=65.47 E-value=3.5 Score=36.81 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=15.3
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
.+.-+-|.||.|||||+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4455788999999999854
No 391
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=65.39 E-value=1.5 Score=42.10 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=22.8
Q ss_pred chhhhhhhhh----cCCCCCCC--cEEEECCCCCchhHHh
Q 011884 8 PVQVAVWQET----IGPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 8 ~~Q~~a~~~~----~~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
.-|.+.++.+ ++.+..|. .++..|.||||||++.
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3566666544 33334564 4777999999999865
No 392
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=65.28 E-value=3.6 Score=36.15 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=14.4
Q ss_pred cEEEECCCCCchhHHhHH
Q 011884 26 DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~ 43 (475)
.+++.|++|||||+.+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNL 19 (223)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999985433
No 393
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=65.16 E-value=3.5 Score=34.68 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=13.2
Q ss_pred cEEEECCCCCchhHH
Q 011884 26 DLCINSPTGSGKTLS 40 (475)
Q Consensus 26 ~~li~a~tGsGKT~~ 40 (475)
-.+|.||+|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 678999999999974
No 394
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=65.10 E-value=1.6 Score=41.68 Aligned_cols=36 Identities=25% Similarity=0.157 Sum_probs=23.8
Q ss_pred ccchhhhhhhhhc----CCCCCCC--cEEEECCCCCchhHHh
Q 011884 6 LFPVQVAVWQETI----GPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 6 ~~~~Q~~a~~~~~----~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
+..-|.+.++.+. +.+..|. .++..|.||||||++.
T Consensus 61 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 4455666665433 3344564 4777999999999874
No 395
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=65.08 E-value=1.5 Score=42.09 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=23.6
Q ss_pred ccchhhhhhhhh----cCCCCCCC--cEEEECCCCCchhHHh
Q 011884 6 LFPVQVAVWQET----IGPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 6 ~~~~Q~~a~~~~----~~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
+..-|.+.+..+ ++.+..|. .++..|.||||||++.
T Consensus 78 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 78 WNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp TTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 345566665543 33344564 4777999999999865
No 396
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=65.07 E-value=3.6 Score=36.73 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=15.0
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
...+.|.||+|||||+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999744
No 397
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=64.83 E-value=3.3 Score=35.60 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.5
Q ss_pred cEEEECCCCCchhHHh
Q 011884 26 DLCINSPTGSGKTLSY 41 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~ 41 (475)
.+.|.|++|||||+++
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999854
No 398
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=64.82 E-value=3.9 Score=39.15 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.7
Q ss_pred cEEEECCCCCchhHHh
Q 011884 26 DLCINSPTGSGKTLSY 41 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~ 41 (475)
-++|.||||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5779999999999754
No 399
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=64.81 E-value=3.9 Score=35.60 Aligned_cols=76 Identities=9% Similarity=0.130 Sum_probs=50.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcCCC-----ceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-----Cccc-CCC
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFGEL-----RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMD 394 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-----~~~~-GiD 394 (475)
+.++||.+|+++.+.++++.+++.... +..+..++|+.+..+.. +.+ ....+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 568999999999999999988776432 46777888886443221 111 13568999995 2222 356
Q ss_pred CCCCcEEEEec
Q 011884 395 VEGVNNVVNYD 405 (475)
Q Consensus 395 ip~~~~Vv~~~ 405 (475)
+..++++|+-.
T Consensus 148 ~~~~~~lViDE 158 (219)
T 1q0u_A 148 VHTAHILVVDE 158 (219)
T ss_dssp GGGCCEEEECS
T ss_pred cCcceEEEEcC
Confidence 66777776643
No 400
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=64.81 E-value=3.7 Score=39.19 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=14.4
Q ss_pred cEEEECCCCCchhHHh
Q 011884 26 DLCINSPTGSGKTLSY 41 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~ 41 (475)
.++|.||+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999754
No 401
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=64.53 E-value=20 Score=34.27 Aligned_cols=76 Identities=12% Similarity=0.172 Sum_probs=53.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-----Cccc-CCCCCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVEG 397 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-----~~~~-GiDip~ 397 (475)
.+.++||.+|+++.+.++++.+.... ..+..+...+|+....+....+ .. ..+|+|+|. .+.. .+++..
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL---DY-GQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHH---HH-CCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHh---hc-CCCEEEcCHHHHHHHHHhCCccHhh
Confidence 46799999999999999999888765 3456778888887665443322 22 458999984 2223 356666
Q ss_pred CcEEEEe
Q 011884 398 VNNVVNY 404 (475)
Q Consensus 398 ~~~Vv~~ 404 (475)
+++||+-
T Consensus 180 ~~~vViD 186 (410)
T 2j0s_A 180 IKMLVLD 186 (410)
T ss_dssp CCEEEEE
T ss_pred eeEEEEc
Confidence 7777753
No 402
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=64.52 E-value=1.3 Score=42.04 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=23.7
Q ss_pred ccchhhhhhhhhc----CCCCCCC--cEEEECCCCCchhHHh
Q 011884 6 LFPVQVAVWQETI----GPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 6 ~~~~Q~~a~~~~~----~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
+..-|.+.++.+. +.+..|. .++..|.||||||++.
T Consensus 54 ~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 54 GNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp TTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3445666665443 3334564 4777999999999865
No 403
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=64.42 E-value=3.2 Score=37.03 Aligned_cols=20 Identities=15% Similarity=0.062 Sum_probs=16.7
Q ss_pred CCCCCCcEEEECCCCCchhH
Q 011884 20 PGLFERDLCINSPTGSGKTL 39 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~ 39 (475)
.+..|.-+.|.||+|+|||+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSS 46 (237)
T ss_dssp EECTTCEEEEECSTTSSHHH
T ss_pred EECCCCEEEEECCCCCCHHH
Confidence 34467889999999999997
No 404
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=64.41 E-value=3.5 Score=41.00 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=14.8
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
+.+++.||+|+|||..+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999854
No 405
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=64.17 E-value=1.3 Score=42.31 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=23.5
Q ss_pred ccchhhhhhhhhc----CCCCCCC--cEEEECCCCCchhHHh
Q 011884 6 LFPVQVAVWQETI----GPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 6 ~~~~Q~~a~~~~~----~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
+..-|.+.+..+. +.+..|. .++..|.||||||++.
T Consensus 65 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 65 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred ccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 3445666655432 3334564 4777999999999865
No 406
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=64.00 E-value=43 Score=30.73 Aligned_cols=74 Identities=20% Similarity=0.226 Sum_probs=48.5
Q ss_pred ccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCch
Q 011884 56 CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI 135 (475)
Q Consensus 56 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 135 (475)
+.++||.|+++.-++.+++.+ .. .+..+..++|+.+.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L---------------------------------------~~----~g~~~~~lhg~l~~ 64 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGL---------------------------------------LR----LGHPAQALHGDMSQ 64 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHH---------------------------------------HT----TTCCEEEECSCCCT
T ss_pred CCCEEEEECCHHHHHHHHHHH---------------------------------------Hh----CCCCEEEEeCCCCH
Confidence 458999999999888854432 22 26788889998776
Q ss_pred HHHHHHHhhccccccCccCCchhHHHhhh-cCCcEEEeCchHHHHHhhcCCCcccCCccEEEE
Q 011884 136 ADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVV 197 (475)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVv 197 (475)
......+ ..+. ...+|+|+|.- +. .++.++.+++||.
T Consensus 65 ~~r~~~~------------------~~f~~g~~~vLVaT~v-----a~--~Gidi~~v~~VI~ 102 (300)
T 3i32_A 65 GERERVM------------------GAFRQGEVRVLVATDV-----AA--RGLDIPQVDLVVH 102 (300)
T ss_dssp HHHHHHH------------------HHHHHTSCCEEEECST-----TT--CSTTCCCCSEEEE
T ss_pred HHHHHHH------------------HHhhcCCceEEEEech-----hh--cCccccceeEEEE
Confidence 5553322 1222 24689999922 12 3577788888884
No 407
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=63.73 E-value=8.3 Score=34.08 Aligned_cols=77 Identities=14% Similarity=0.212 Sum_probs=50.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcCC-CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-----Ccc---cCCCCC
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT---RGMDVE 396 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-----~~~---~GiDip 396 (475)
+.++||.+|+++.+.++++.+++... .+..+..++|+..... .......+..+|+|+|. .+. ..+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 45799999999999999999988642 3466667776532211 11122235678999994 111 247788
Q ss_pred CCcEEEEec
Q 011884 397 GVNNVVNYD 405 (475)
Q Consensus 397 ~~~~Vv~~~ 405 (475)
++.++|+-.
T Consensus 175 ~~~~lViDE 183 (245)
T 3dkp_A 175 SVEWLVVDE 183 (245)
T ss_dssp TCCEEEESS
T ss_pred cCcEEEEeC
Confidence 888887644
No 408
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=63.73 E-value=6.2 Score=45.47 Aligned_cols=47 Identities=19% Similarity=0.097 Sum_probs=32.9
Q ss_pred hhhhcC--CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 14 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 14 ~~~~~~--~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
+..++. .+..+..+++.||+|+|||..++..+...+.. +.+++|+.-
T Consensus 22 LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~----G~~vlYI~t 70 (1706)
T 3cmw_A 22 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDA 70 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEECT
T ss_pred HHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhC----CCceEEEEe
Confidence 344443 45567899999999999998776666555433 346888864
No 409
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=63.51 E-value=2.6 Score=40.51 Aligned_cols=35 Identities=29% Similarity=0.252 Sum_probs=22.3
Q ss_pred cchhhhhhhh---hcCCCCCCC--cEEEECCCCCchhHHh
Q 011884 7 FPVQVAVWQE---TIGPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 7 ~~~Q~~a~~~---~~~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
..-|.+.++. ++..+..|. .++..|.||||||++.
T Consensus 94 ~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 94 GSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp TCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred cccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 3345554443 234445564 4777999999999865
No 410
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=63.29 E-value=1.5 Score=41.81 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=22.4
Q ss_pred chhhhhhhhh----cCCCCCCC--cEEEECCCCCchhHHh
Q 011884 8 PVQVAVWQET----IGPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 8 ~~Q~~a~~~~----~~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
.-|.+.+..+ ++.+..|. .++..|.||||||++.
T Consensus 71 a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 71 AGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred ccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3466555433 33444564 4777999999999875
No 411
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=63.14 E-value=4.4 Score=36.36 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=15.6
Q ss_pred CCCcEEEECCCCCchhHHh
Q 011884 23 FERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~ 41 (475)
.+..+.|.||+|||||+++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3467889999999999854
No 412
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=62.77 E-value=1.7 Score=41.45 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=21.4
Q ss_pred hhhhhhhhh----cCCCCCCC--cEEEECCCCCchhHHh
Q 011884 9 VQVAVWQET----IGPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 9 ~Q~~a~~~~----~~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
-|.+.++.+ ++.+..|. .++..|.||||||++.
T Consensus 83 sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 83 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 455555443 23334564 4777999999999865
No 413
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=62.70 E-value=13 Score=35.27 Aligned_cols=76 Identities=11% Similarity=0.227 Sum_probs=53.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-----c-ccCCCCCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----M-TRGMDVEG 397 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-----~-~~GiDip~ 397 (475)
.+.++||.+|++..+.++++.+.... ..+..+..++|+.+..+....+. ..+|+|+|.- + ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 45699999999999999999887764 34578889999887655544333 3579999841 1 12355566
Q ss_pred CcEEEEec
Q 011884 398 VNNVVNYD 405 (475)
Q Consensus 398 ~~~Vv~~~ 405 (475)
+++||+-.
T Consensus 163 ~~~vIiDE 170 (394)
T 1fuu_A 163 IKMFILDE 170 (394)
T ss_dssp CCEEEEET
T ss_pred CcEEEEEC
Confidence 77777644
No 414
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=62.68 E-value=5.8 Score=46.46 Aligned_cols=41 Identities=20% Similarity=0.050 Sum_probs=30.9
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
.+..+..+++.+|+|+|||..+...+.+.+.. +.+++|+.-
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~----Ge~~~Fit~ 1117 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDA 1117 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECT
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEEc
Confidence 56678999999999999998776666555433 446888863
No 415
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=62.62 E-value=29 Score=35.95 Aligned_cols=80 Identities=19% Similarity=0.366 Sum_probs=51.7
Q ss_pred cccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCc
Q 011884 55 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 134 (475)
Q Consensus 55 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (475)
.+.++||.|+|+.-++.+++. +... ++++..++|+..
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~---------------------------------------L~~~----gi~~~~lh~~~~ 480 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDY---------------------------------------LKEI----GIKVNYLHSEIK 480 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHH---------------------------------------HHHT----TCCEEEECTTCC
T ss_pred cCCeEEEEECCHHHHHHHHHH---------------------------------------HHhc----CCCeEEEeCCCC
Confidence 455899999999988885443 3322 567777888766
Q ss_pred hHHHHHHHhhccccccCccCCchhHHHhhh-cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchHH
Q 011884 135 IADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 202 (475)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H~ 202 (475)
..+....+ +.+. ...+|+|+|. .+ ..++.+.+++++|+=+++.
T Consensus 481 ~~~R~~~l------------------~~f~~g~~~VLVaT~-----~l--~~GlDip~v~lVi~~d~d~ 524 (661)
T 2d7d_A 481 TLERIEII------------------RDLRLGKYDVLVGIN-----LL--REGLDIPEVSLVAILDADK 524 (661)
T ss_dssp HHHHHHHH------------------HHHHHTSCSEEEESC-----CC--STTCCCTTEEEEEETTTTC
T ss_pred HHHHHHHH------------------HHHhcCCeEEEEecc-----hh--hCCcccCCCCEEEEeCccc
Confidence 54443221 1222 2468999983 11 2457788899999888753
No 416
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=62.59 E-value=3.5 Score=39.34 Aligned_cols=37 Identities=27% Similarity=0.178 Sum_probs=23.8
Q ss_pred ccchhhhhhhhhcCC----CC-CCCc--EEEECCCCCchhHHhH
Q 011884 6 LFPVQVAVWQETIGP----GL-FERD--LCINSPTGSGKTLSYA 42 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~----~~-~~~~--~li~a~tGsGKT~~~~ 42 (475)
+..-|.+.++.+... .. .|.+ ++..|.||||||++..
T Consensus 60 ~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 60 DTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEe
Confidence 345577666654322 22 3544 6889999999998753
No 417
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=62.48 E-value=4.8 Score=49.30 Aligned_cols=67 Identities=16% Similarity=0.061 Sum_probs=36.0
Q ss_pred ccchhhhhhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcccHHHHHHHh
Q 011884 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 73 (475)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~Pt~~L~~q~~ 73 (475)
+.+.+..=+-.+.+.+...+.+++.||||||||.++-. +..++..-......+.++-|----..|++
T Consensus 888 ~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~-L~~al~~l~~~~~~~~~iNPKait~~eLy 954 (3245)
T 3vkg_A 888 TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV-YLEAIEQVDNIKSEAHVMDPKAITKDQLF 954 (3245)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH-HHHHHTTTTTCEEEEEEECTTTSCHHHHH
T ss_pred cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH-HHHHHHHhhCCCceEEEECCCCCchhhhc
Confidence 34444333233444444567799999999999986543 33333221111223556667544444544
No 418
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=62.15 E-value=3.5 Score=36.09 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=16.6
Q ss_pred CCCCCcEEEECCCCCchhHH
Q 011884 21 GLFERDLCINSPTGSGKTLS 40 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~ 40 (475)
+..|.-+.|.||+|+|||+.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp EETTCCEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34578889999999999973
No 419
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=62.14 E-value=5.3 Score=35.33 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=16.5
Q ss_pred CCCCcEEEECCCCCchhHHh
Q 011884 22 LFERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 22 ~~~~~~li~a~tGsGKT~~~ 41 (475)
..+.-+++.|+.|+|||+.+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHH
Confidence 35677899999999999854
No 420
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=62.12 E-value=1.9 Score=42.49 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=23.0
Q ss_pred chhhhhhhhh----cCCCCCCC--cEEEECCCCCchhHHh
Q 011884 8 PVQVAVWQET----IGPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 8 ~~Q~~a~~~~----~~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
.-|.+.++.+ ++....|. .++..|.||||||++.
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4576666544 33334564 4777999999999875
No 421
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=61.94 E-value=6.6 Score=33.06 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=17.1
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHh
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLS 50 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~ 50 (475)
.-+++.|+.|+|||... ..++..+.
T Consensus 7 ~~i~i~G~sGsGKTTl~-~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLL-KKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHH-HHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHH-HHHHHhcc
Confidence 34788999999999743 33444443
No 422
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=61.53 E-value=75 Score=31.79 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=50.5
Q ss_pred cccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCc
Q 011884 55 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 134 (475)
Q Consensus 55 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (475)
.+.++||.|+|+.-+..+++.+ ..... .+..+..++|+..
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L---------------------------------------~~~~~-~~~~v~~~h~~~~ 377 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSIL---------------------------------------KNEFK-KDLPILEFHGKIT 377 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHH---------------------------------------HHHHT-TTSCEEEESTTSC
T ss_pred CCCcEEEEcCcHHHHHHHHHHH---------------------------------------HHhcc-CCceEEEecCCCC
Confidence 4558999999999998854443 22211 2567888888876
Q ss_pred hHHHHHHHhhccccccCccCCchhHHHhhh-cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcc
Q 011884 135 IADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 199 (475)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE 199 (475)
........ ..+. ...+|+|+|.- +. .+++++++++||.-.
T Consensus 378 ~~~R~~~~------------------~~f~~g~~~vLvaT~~-----~~--~GiDip~v~~VI~~~ 418 (563)
T 3i5x_A 378 QNKRTSLV------------------KRFKKDESGILVCTDV-----GA--RGMDFPNVHEVLQIG 418 (563)
T ss_dssp HHHHHHHH------------------HHHHHCSSEEEEECGG-----GT--SSCCCTTCCEEEEES
T ss_pred HHHHHHHH------------------HHHhcCCCCEEEEcch-----hh--cCCCcccCCEEEEEC
Confidence 65443221 1222 24689999931 22 357778888887554
No 423
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=61.42 E-value=34 Score=35.50 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=50.3
Q ss_pred cccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCc
Q 011884 55 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 134 (475)
Q Consensus 55 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (475)
.+.++||.|+|+.-++.+++. +... ++.+..++|+..
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~---------------------------------------L~~~----gi~~~~lh~~~~ 474 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSF---------------------------------------LVEH----GIRARYLHHELD 474 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHH---------------------------------------HHHT----TCCEEEECTTCC
T ss_pred cCCEEEEEECCHHHHHHHHHH---------------------------------------HHhc----CCCceeecCCCC
Confidence 455899999999998885443 3322 567777887765
Q ss_pred hHHHHHHHhhccccccCccCCchhHHHhhh-cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcchH
Q 011884 135 IADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 201 (475)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~H 201 (475)
..+.... .+.+. ...+|+|+|.- + ..++.+.+++++|+=+++
T Consensus 475 ~~~R~~~------------------~~~f~~g~~~VLvaT~~-----l--~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 475 AFKRQAL------------------IRDLRLGHYDCLVGINL-----L--REGLDIPEVSLVAILDAD 517 (664)
T ss_dssp HHHHHHH------------------HHHHHTTSCSEEEESCC-----C--CTTCCCTTEEEEEETTTT
T ss_pred HHHHHHH------------------HHHhhcCCceEEEccCh-----h--hcCccCCCCCEEEEeCCc
Confidence 5444322 12222 23689999821 1 235778889988877764
No 424
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=61.40 E-value=4.1 Score=34.76 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.2
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
..+.|.|++|||||+++
T Consensus 9 ~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999854
No 425
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=61.34 E-value=3.9 Score=37.06 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=16.8
Q ss_pred CCCCCcEEEECCCCCchhHH
Q 011884 21 GLFERDLCINSPTGSGKTLS 40 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~ 40 (475)
+..|.-+.|.||+|+|||+.
T Consensus 43 i~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 44678899999999999973
No 426
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=61.28 E-value=2.8 Score=44.48 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=16.7
Q ss_pred CCcEEEECCCCCchhHHhHH
Q 011884 24 ERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~ 43 (475)
..++++.||+|+|||..+-.
T Consensus 207 ~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHH
Confidence 47899999999999986544
No 427
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=60.90 E-value=4.7 Score=36.66 Aligned_cols=20 Identities=30% Similarity=0.224 Sum_probs=16.6
Q ss_pred CCCCCcEEEECCCCCchhHH
Q 011884 21 GLFERDLCINSPTGSGKTLS 40 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~ 40 (475)
+..|.-+.|.||+|+|||+.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 44577889999999999973
No 428
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=60.88 E-value=4.5 Score=43.26 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=16.7
Q ss_pred CCCCcEEEECCCCCchhHHh
Q 011884 22 LFERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 22 ~~~~~~li~a~tGsGKT~~~ 41 (475)
..+..+++.||+|+|||..+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH
Confidence 44678999999999999754
No 429
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=60.63 E-value=5.1 Score=34.37 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=14.8
Q ss_pred CcEEEECCCCCchhHHhHH
Q 011884 25 RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~ 43 (475)
..+.+.|++|||||+++-.
T Consensus 13 ~iIgltG~~GSGKSTva~~ 31 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEI 31 (192)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3477899999999986533
No 430
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=60.62 E-value=9.4 Score=35.96 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=27.4
Q ss_pred hhhhhcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 13 a~~~~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
+++.+--.+..+..+.+.||+|+|||... ..+...+.. .+.++.++.
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl-~~l~g~~~~---~~g~v~i~~ 90 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTI-DALGSLLTA---AGHKVAVLA 90 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHH-HHHHHHHHH---TTCCEEEEE
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHH-HHHHHhhhh---CCCEEEEEE
Confidence 34444334445677899999999999633 333333322 233566665
No 431
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=60.56 E-value=3.8 Score=39.77 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=16.2
Q ss_pred CCCC--cEEEECCCCCchhHHhH
Q 011884 22 LFER--DLCINSPTGSGKTLSYA 42 (475)
Q Consensus 22 ~~~~--~~li~a~tGsGKT~~~~ 42 (475)
..|. .++..|.||||||++.+
T Consensus 137 l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 137 LDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HTTCCEEEEEESCTTSSHHHHHH
T ss_pred hCCcceEEEEECCCCCCCceEeC
Confidence 3464 47779999999998763
No 432
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=60.56 E-value=7.9 Score=37.93 Aligned_cols=36 Identities=25% Similarity=0.176 Sum_probs=23.6
Q ss_pred CcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
..+++.+++|+|||+++...+.. +... .+.+|+++.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~-l~~~--~G~kVllvd 136 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKF-LREK--HKKKVLVVS 136 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH-HHHT--SCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHHh--cCCeEEEEe
Confidence 35778899999999877654433 3222 144677765
No 433
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=60.56 E-value=3.6 Score=37.66 Aligned_cols=21 Identities=19% Similarity=-0.013 Sum_probs=16.9
Q ss_pred CCCCCCcEEEECCCCCchhHH
Q 011884 20 PGLFERDLCINSPTGSGKTLS 40 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~ 40 (475)
.+..|.-+.|.||+|||||+.
T Consensus 30 ~i~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 30 NIKRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp EEETTSEEEEECCTTSSHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHH
Confidence 344577789999999999973
No 434
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=60.52 E-value=8.2 Score=35.66 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=22.8
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
+.-+++.+++|+|||..+...+. .+.. .+.+++++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~-~~~~---~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY-FYKK---KGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH-HHHH---TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHH---CCCeEEEEe
Confidence 44577899999999986655332 2222 244676664
No 435
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=60.37 E-value=1.4 Score=47.54 Aligned_cols=37 Identities=19% Similarity=0.007 Sum_probs=0.0
Q ss_pred hhhhhhhhhcCCCCCC-----------CcEEEECCCCCchhHHhHHHH
Q 011884 9 VQVAVWQETIGPGLFE-----------RDLCINSPTGSGKTLSYALPI 45 (475)
Q Consensus 9 ~Q~~a~~~~~~~~~~~-----------~~~li~a~tGsGKT~~~~~~~ 45 (475)
+|..++..+...+... ..+++.||||+|||.++-..+
T Consensus 562 G~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la 609 (854)
T 1qvr_A 562 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 609 (854)
T ss_dssp SCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHH
No 436
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=60.36 E-value=8.5 Score=35.49 Aligned_cols=37 Identities=24% Similarity=0.161 Sum_probs=23.3
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
.++.+.+.+++|+|||..+...+. .+.. .+.+++++-
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~-~~~~---~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL-YYKG---KGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH-HHHH---TTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-HHHH---cCCeEEEec
Confidence 355677889999999986554332 2222 244677664
No 437
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=60.27 E-value=5 Score=34.90 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.2
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
.-+.|.|+.|||||+++
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999854
No 438
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=60.21 E-value=3.7 Score=36.38 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=16.1
Q ss_pred CCCCCcEEEECCCCCchhH
Q 011884 21 GLFERDLCINSPTGSGKTL 39 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~ 39 (475)
+..|.-+.|.||+|+|||+
T Consensus 31 i~~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp EETTCEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3457788999999999997
No 439
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=60.16 E-value=3.5 Score=37.29 Aligned_cols=20 Identities=30% Similarity=0.210 Sum_probs=16.5
Q ss_pred CCCCCCcEEEECCCCCchhH
Q 011884 20 PGLFERDLCINSPTGSGKTL 39 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~ 39 (475)
.+..|.-+.|.||+|+|||+
T Consensus 29 ~i~~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKST 48 (257)
T ss_dssp EEETTCEEEEECSTTSSHHH
T ss_pred EEeCCCEEEEECCCCCCHHH
Confidence 34457778899999999997
No 440
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=60.15 E-value=5.8 Score=34.28 Aligned_cols=17 Identities=29% Similarity=0.169 Sum_probs=13.9
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
.-.+|.||+|+|||...
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 45788999999999753
No 441
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=60.11 E-value=17 Score=38.59 Aligned_cols=73 Identities=10% Similarity=0.011 Sum_probs=53.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-Cc------------c
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM------------T 390 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-~~------------~ 390 (475)
.+.+++|.++|++.|.+.++.+.... ..++.+..+.|+++..+|.... ..+|+++|+ -+ .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 46689999999999999998887764 2468899999999876554432 368999996 12 1
Q ss_pred cCCCCCCCcEEEE
Q 011884 391 RGMDVEGVNNVVN 403 (475)
Q Consensus 391 ~GiDip~~~~Vv~ 403 (475)
..+++..+.++|+
T Consensus 197 ~~l~lr~~~~lVl 209 (844)
T 1tf5_A 197 EQMVQRPLHFAVI 209 (844)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhcccCCCEEEE
Confidence 2356677777665
No 442
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=59.82 E-value=3.7 Score=36.69 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=16.6
Q ss_pred CCCCCCcEEEECCCCCchhH
Q 011884 20 PGLFERDLCINSPTGSGKTL 39 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~ 39 (475)
.+..|.-+.|.||+|+|||+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKST 43 (243)
T ss_dssp EECTTEEEEEECCTTSSHHH
T ss_pred EEcCCCEEEEECCCCCCHHH
Confidence 34467788999999999997
No 443
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=59.60 E-value=4.5 Score=37.82 Aligned_cols=28 Identities=21% Similarity=-0.018 Sum_probs=20.8
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHH
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQ 47 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~ 47 (475)
.+..|.-++|.|++|+|||..++..+..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445677999999999999866554443
No 444
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=59.58 E-value=3.8 Score=36.76 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=16.6
Q ss_pred CCCCCcEEEECCCCCchhHH
Q 011884 21 GLFERDLCINSPTGSGKTLS 40 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~ 40 (475)
+..|.-+.|.||+|+|||+.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34577889999999999973
No 445
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=59.51 E-value=15 Score=39.01 Aligned_cols=73 Identities=5% Similarity=-0.088 Sum_probs=52.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-c-----ccC-----
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRG----- 392 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-~-----~~G----- 392 (475)
.+.+++|.+||++.|.+.++.+.... ..++.+..+.|+++..+|.... ..+|+++|+- + ..+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~ 187 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSP 187 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccH
Confidence 45689999999999999998887764 2468899999999876544322 3689999962 2 222
Q ss_pred --CCCCCCcEEEE
Q 011884 393 --MDVEGVNNVVN 403 (475)
Q Consensus 393 --iDip~~~~Vv~ 403 (475)
++..++.++|+
T Consensus 188 ~~~~~~~l~~lVl 200 (853)
T 2fsf_A 188 EERVQRKLHYALV 200 (853)
T ss_dssp GGCCCCSCCEEEE
T ss_pred hHhcccCCcEEEE
Confidence 45566777664
No 446
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=59.16 E-value=3.4 Score=38.44 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=16.8
Q ss_pred CCCCCcEEEECCCCCchhHH
Q 011884 21 GLFERDLCINSPTGSGKTLS 40 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~ 40 (475)
+..|..+.|.||+|+|||+.
T Consensus 77 i~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHH
Confidence 44578899999999999973
No 447
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=58.95 E-value=12 Score=37.39 Aligned_cols=76 Identities=14% Similarity=0.284 Sum_probs=52.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcCC-CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-----cccC-C-CCCC
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-M-DVEG 397 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-----~~~G-i-Dip~ 397 (475)
+.++||++|+++.+.+.++.++.... .+..+..++|+.+...+...+. +..+|+|+|.- +..+ + ++..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 67899999999999999988887632 3588999999986654432221 13689999852 2222 3 5566
Q ss_pred CcEEEEec
Q 011884 398 VNNVVNYD 405 (475)
Q Consensus 398 ~~~Vv~~~ 405 (475)
+++||+-.
T Consensus 128 ~~~vViDE 135 (555)
T 3tbk_A 128 FTLMIFDE 135 (555)
T ss_dssp CSEEEETT
T ss_pred CCEEEEEC
Confidence 78777643
No 448
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=58.94 E-value=7.9 Score=33.19 Aligned_cols=77 Identities=12% Similarity=0.186 Sum_probs=47.3
Q ss_pred CCCeEEEEcCChHHHHH-HHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-c----cc-------
Q 011884 325 GEEKCIVFTSSVESTHR-LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M----TR------- 391 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~-l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-~----~~------- 391 (475)
.+.++||++|++..+.+ +.+.+......+..+..++|+.....+...+. +..+|+|+|.- + ..
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~ 156 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDA 156 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCccccc
Confidence 36799999999999888 77777776544578888888764432221111 14678888852 1 11
Q ss_pred CCCCCCCcEEEEec
Q 011884 392 GMDVEGVNNVVNYD 405 (475)
Q Consensus 392 GiDip~~~~Vv~~~ 405 (475)
++.+.++++||+=.
T Consensus 157 ~~~~~~~~~iIiDE 170 (216)
T 3b6e_A 157 GVQLSDFSLIIIDE 170 (216)
T ss_dssp CCCGGGCSEEEETT
T ss_pred ccchhcccEEEEEC
Confidence 24556667766544
No 449
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=58.83 E-value=6.7 Score=36.53 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=16.5
Q ss_pred CCCCCcEEEECCCCCchhHHh
Q 011884 21 GLFERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~~ 41 (475)
...+.-+.|.||+|||||+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHH
Confidence 344566889999999999754
No 450
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=58.76 E-value=9.1 Score=34.57 Aligned_cols=41 Identities=7% Similarity=-0.228 Sum_probs=25.3
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
.+..|..+++.+++|+|||+.++-.+.+.+. ++-++++++-
T Consensus 17 Gl~~gs~~li~g~p~~~~~~l~~qfl~~g~~----~Ge~~~~~~~ 57 (260)
T 3bs4_A 17 IKKHSLILIHEEDASSRGKDILFYILSRKLK----SDNLVGMFSI 57 (260)
T ss_dssp BCTTCEEEEEECSGGGCHHHHHHHHHHHHHH----TTCEEEEEEC
T ss_pred CCCCCcEEEEEeCCCccHHHHHHHHHHHHHH----CCCcEEEEEE
Confidence 3446677888888888888444333444343 3446777763
No 451
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=58.73 E-value=4.5 Score=36.50 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=16.2
Q ss_pred CCCCCcEEEECCCCCchhH
Q 011884 21 GLFERDLCINSPTGSGKTL 39 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~ 39 (475)
+..|.-+.|.||+|+|||+
T Consensus 38 i~~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp ECTTCEEEEECCTTSSHHH
T ss_pred EcCCcEEEEECCCCCCHHH
Confidence 4457788999999999997
No 452
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=58.67 E-value=5.7 Score=38.01 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.7
Q ss_pred CcEEEECCCCCchhHH
Q 011884 25 RDLCINSPTGSGKTLS 40 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~ 40 (475)
.-.+|.|+||+|||..
T Consensus 26 gl~vi~G~NGaGKT~i 41 (371)
T 3auy_A 26 GIVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4578999999999985
No 453
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=58.64 E-value=4.8 Score=36.13 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=16.5
Q ss_pred CCCCCcEEEECCCCCchhHH
Q 011884 21 GLFERDLCINSPTGSGKTLS 40 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~~ 40 (475)
+..|.-+.|.||+|+|||+.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34577888999999999973
No 454
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=58.57 E-value=50 Score=31.28 Aligned_cols=75 Identities=19% Similarity=0.289 Sum_probs=48.3
Q ss_pred cccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCc
Q 011884 55 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 134 (475)
Q Consensus 55 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (475)
.+.++||.|+++.-+..+++.+ ... +..+..++|+.+
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L---------------------------------------~~~----~~~~~~~~~~~~ 301 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAEL---------------------------------------SKE----GHQVALLSGEMM 301 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHH---------------------------------------HHT----TCCCEEECTTSC
T ss_pred CCCCEEEEeCCHHHHHHHHHHH---------------------------------------HhC----CCeEEEecCCCC
Confidence 3457999999999888854443 222 567788888876
Q ss_pred hHHHHHHHhhccccccCccCCchhHHHhhhc-CCcEEEeCchHHHHHhhcCCCcccCCccEEEE
Q 011884 135 IADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVV 197 (475)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVv 197 (475)
..+..... +.+.. ..+|+|+|. .+. .+++++++++||.
T Consensus 302 ~~~r~~~~------------------~~f~~g~~~vlv~T~-----~~~--~Gidip~~~~Vi~ 340 (412)
T 3fht_A 302 VEQRAAVI------------------ERFREGKEKVLVTTN-----VCA--RGIDVEQVSVVIN 340 (412)
T ss_dssp HHHHHHHH------------------HHHHTTSCSEEEECG-----GGT--SSCCCTTEEEEEE
T ss_pred HHHHHHHH------------------HHHHCCCCcEEEEcC-----ccc--cCCCccCCCEEEE
Confidence 65543322 22222 468999993 122 3577888888884
No 455
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=58.54 E-value=4.6 Score=48.84 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=17.8
Q ss_pred CCCCcEEEECCCCCchhHHhHH
Q 011884 22 LFERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 22 ~~~~~~li~a~tGsGKT~~~~~ 43 (475)
..+..+++.||||||||.++-.
T Consensus 921 ~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 921 KTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHCSEEEEECSTTSSHHHHHHH
T ss_pred HhcceEEEECCCCCCHHHHHHH
Confidence 3467799999999999986544
No 456
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=58.32 E-value=4 Score=39.55 Aligned_cols=37 Identities=22% Similarity=0.128 Sum_probs=23.7
Q ss_pred ccchhhhhhhhh----cCCCCCCC--cEEEECCCCCchhHHhH
Q 011884 6 LFPVQVAVWQET----IGPGLFER--DLCINSPTGSGKTLSYA 42 (475)
Q Consensus 6 ~~~~Q~~a~~~~----~~~~~~~~--~~li~a~tGsGKT~~~~ 42 (475)
+..-|.+.+..+ +..+..|. .++..|.||||||++..
T Consensus 131 ~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 131 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred cCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 344566665543 23334563 47779999999998753
No 457
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=58.22 E-value=5.7 Score=34.11 Aligned_cols=18 Identities=33% Similarity=0.206 Sum_probs=14.9
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
+.-+.|.|++|||||+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456888999999999754
No 458
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=58.22 E-value=4.7 Score=36.75 Aligned_cols=19 Identities=26% Similarity=0.315 Sum_probs=16.1
Q ss_pred CCCCCcEEEECCCCCchhH
Q 011884 21 GLFERDLCINSPTGSGKTL 39 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~ 39 (475)
+..|.-+.|.||+|+|||+
T Consensus 42 i~~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKST 60 (271)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred ECCCCEEEEECCCCCCHHH
Confidence 4457778999999999997
No 459
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=58.04 E-value=4.2 Score=36.99 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=16.1
Q ss_pred CCCCCcEEEECCCCCchhH
Q 011884 21 GLFERDLCINSPTGSGKTL 39 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~ 39 (475)
+..|.-+.|.||+|+|||+
T Consensus 34 i~~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKST 52 (266)
T ss_dssp EETTCEEEEECCTTSCHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 3457778999999999997
No 460
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=58.02 E-value=5.1 Score=33.78 Aligned_cols=21 Identities=14% Similarity=0.020 Sum_probs=17.1
Q ss_pred CCCcEEEECCCCCchhHHhHH
Q 011884 23 FERDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~ 43 (475)
.|.-+++.|+.|+|||..++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~ 35 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLA 35 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHH
Confidence 367799999999999976543
No 461
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=58.01 E-value=4.7 Score=36.51 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=16.1
Q ss_pred CCCCCcEEEECCCCCchhH
Q 011884 21 GLFERDLCINSPTGSGKTL 39 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~ 39 (475)
+..|.-+.|.||+|+|||+
T Consensus 29 i~~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKST 47 (262)
T ss_dssp ECTTCEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 4457778899999999997
No 462
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=57.88 E-value=4.8 Score=36.55 Aligned_cols=21 Identities=29% Similarity=0.116 Sum_probs=17.0
Q ss_pred CCCCCCcEEEECCCCCchhHH
Q 011884 20 PGLFERDLCINSPTGSGKTLS 40 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~ 40 (475)
.+..|.-+.|.||+|+|||+.
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHH
Confidence 344677889999999999973
No 463
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=57.69 E-value=5.6 Score=36.56 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=13.6
Q ss_pred cEEEECCCCCchhHHh
Q 011884 26 DLCINSPTGSGKTLSY 41 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~ 41 (475)
-+++.|++|||||+.+
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 464
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=57.64 E-value=5.6 Score=37.75 Aligned_cols=29 Identities=17% Similarity=0.081 Sum_probs=23.5
Q ss_pred hhhhhhhcCCCCCCCcEEEECCCCCchhHH
Q 011884 11 VAVWQETIGPGLFERDLCINSPTGSGKTLS 40 (475)
Q Consensus 11 ~~a~~~~~~~~~~~~~~li~a~tGsGKT~~ 40 (475)
..++..+ -.+..|+.+.|.||.|+|||..
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTL 87 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTL 87 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHH
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHH
Confidence 4567666 5566789999999999999974
No 465
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=57.61 E-value=3.8 Score=36.12 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=15.9
Q ss_pred CCCCCcEEEECCCCCchhH
Q 011884 21 GLFERDLCINSPTGSGKTL 39 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~ 39 (475)
+..|.-+.|.||+|+|||+
T Consensus 27 i~~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKST 45 (224)
T ss_dssp EETTCEEEEEECTTSCHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3457778899999999997
No 466
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=57.58 E-value=4.9 Score=36.47 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.1
Q ss_pred CCCCCcEEEECCCCCchhH
Q 011884 21 GLFERDLCINSPTGSGKTL 39 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~ 39 (475)
+..|.-+.|.||+|+|||+
T Consensus 47 i~~Gei~~liG~NGsGKST 65 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKST 65 (263)
T ss_dssp ECTTCEEEEECCTTSSHHH
T ss_pred EcCCCEEEEEcCCCCcHHH
Confidence 4457778899999999997
No 467
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=57.50 E-value=4.4 Score=36.17 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=16.1
Q ss_pred CCCCCcEEEECCCCCchhH
Q 011884 21 GLFERDLCINSPTGSGKTL 39 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~ 39 (475)
+..|.-+.|.||+|+|||+
T Consensus 29 i~~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTT 47 (240)
T ss_dssp EETTCEEEEECSTTSSHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3457778899999999997
No 468
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=57.26 E-value=3.3 Score=34.82 Aligned_cols=16 Identities=38% Similarity=0.306 Sum_probs=13.2
Q ss_pred cEEEECCCCCchhHHh
Q 011884 26 DLCINSPTGSGKTLSY 41 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~ 41 (475)
.+.|.|++|||||+..
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999754
No 469
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=57.22 E-value=6.8 Score=34.60 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=16.2
Q ss_pred CCCcEEEECCCCCchhHHhH
Q 011884 23 FERDLCINSPTGSGKTLSYA 42 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~ 42 (475)
.+..+.|.|++|||||.++-
T Consensus 15 ~~~~i~i~G~~gsGKst~~~ 34 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAK 34 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678899999999998543
No 470
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=57.19 E-value=5.5 Score=39.85 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.5
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
+.+++.||+|+|||+.+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999754
No 471
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=57.12 E-value=5.9 Score=36.48 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=14.0
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
.-+.|.|++|||||+.+
T Consensus 32 ~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34778999999999854
No 472
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=56.84 E-value=6.1 Score=35.33 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=14.2
Q ss_pred cEEEECCCCCchhHHhH
Q 011884 26 DLCINSPTGSGKTLSYA 42 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~ 42 (475)
-+.|.|++|||||+++-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998653
No 473
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=56.79 E-value=17 Score=37.93 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=70.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcCCCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC-----CcccCCC-CCCCc
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRGMD-VEGVN 399 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~-----~~~~GiD-ip~~~ 399 (475)
++++++.+|++..+.+.++.++.....+..+...+|+....++ ..+..+|+|+|. .+..+.. +.+++
T Consensus 68 ~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~ 140 (702)
T 2p6r_A 68 GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAVS 140 (702)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhcC
Confidence 6799999999999999999997655567889999998765432 124789999995 2333333 56788
Q ss_pred EEEEecCCC-----CHHHHHHHhhhccccCCCCcEEEEeec-hhHHHHHHHH
Q 011884 400 NVVNYDKPA-----YIKTYIHRAGRTARAGQLGRCFTLLHK-DEVKRFKKLL 445 (475)
Q Consensus 400 ~Vv~~~~~~-----s~~~~~Q~~GR~~R~~~~g~~~~~~~~-~~~~~~~~l~ 445 (475)
+||+=.... --..+...++|.-+.+.+-..+.+-.. .+.+.+.+++
T Consensus 141 ~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~~~~~~~l 192 (702)
T 2p6r_A 141 CLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWL 192 (702)
T ss_dssp EEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTTHHHHHHHT
T ss_pred EEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCCHHHHHHHh
Confidence 887744331 223344455565444433334444322 3344444443
No 474
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=56.50 E-value=3.8 Score=39.20 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=22.6
Q ss_pred ccchhhhhhhhh---cCCCCCCC--cEEEECCCCCchhHHh
Q 011884 6 LFPVQVAVWQET---IGPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 6 ~~~~Q~~a~~~~---~~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
+..-|.+.++.+ +..+..|. .++..|.||||||++.
T Consensus 57 ~~~~Q~~Vy~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 57 GNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp TTCCHHHHHHTTTHHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred CCCCcceehhhhhhhhHhhhcCCceEEEEECCCCCCCeEee
Confidence 344566555442 22233464 4777999999999875
No 475
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=56.41 E-value=24 Score=32.80 Aligned_cols=76 Identities=12% Similarity=0.227 Sum_probs=52.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-----cc-cCCCCCC
Q 011884 325 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MT-RGMDVEG 397 (475)
Q Consensus 325 ~~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-----~~-~GiDip~ 397 (475)
.+.++||.+|++..+.++++.+.... ..+..+..++|+....+.... +. ..+|+|+|.- +. ..+++..
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~--~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA---LK--NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHH---HH--TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhh---cC--CCCEEEecHHHHHHHHHcCCccccc
Confidence 46689999999999999999998863 235678888888766443332 22 4689999852 11 2356667
Q ss_pred CcEEEEec
Q 011884 398 VNNVVNYD 405 (475)
Q Consensus 398 ~~~Vv~~~ 405 (475)
+++||+-.
T Consensus 148 ~~~iIiDE 155 (367)
T 1hv8_A 148 VKYFILDE 155 (367)
T ss_dssp CCEEEEET
T ss_pred CCEEEEeC
Confidence 77777643
No 476
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=56.41 E-value=4.6 Score=36.27 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=16.0
Q ss_pred CCCCCcEEEECCCCCchhH
Q 011884 21 GLFERDLCINSPTGSGKTL 39 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~ 39 (475)
+..|.-+.|.||+|+|||+
T Consensus 23 i~~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKST 41 (249)
T ss_dssp EETTCEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 3357778899999999997
No 477
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=56.39 E-value=7.3 Score=36.97 Aligned_cols=22 Identities=18% Similarity=0.063 Sum_probs=16.7
Q ss_pred CCCCCc--EEEECCCCCchhHHhH
Q 011884 21 GLFERD--LCINSPTGSGKTLSYA 42 (475)
Q Consensus 21 ~~~~~~--~li~a~tGsGKT~~~~ 42 (475)
+..|.. +++.|++|+|||...-
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~ 42 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAE 42 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHH
Confidence 334544 8999999999998653
No 478
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=56.19 E-value=4.4 Score=38.84 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=23.2
Q ss_pred ccchhhhhhhhh----cCCCCCCC--cEEEECCCCCchhHHh
Q 011884 6 LFPVQVAVWQET----IGPGLFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 6 ~~~~Q~~a~~~~----~~~~~~~~--~~li~a~tGsGKT~~~ 41 (475)
+..-|.+.+..+ ++.+..|. .++..|.||||||++.
T Consensus 77 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 77 PESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceec
Confidence 344566665543 23334464 4777999999999864
No 479
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=56.16 E-value=16 Score=36.65 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=50.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcCC-CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-----cccC-C-CCCC
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-M-DVEG 397 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-----~~~G-i-Dip~ 397 (475)
+.++||.+|+++.+.+..+.++.... .+..+..++|+.+...+...+ . ...+|+|+|.- +..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKV---I-EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHH---H-HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHh---h-CCCCEEEECHHHHHHHHHhCccccccc
Confidence 67899999999999999998887632 258899999998654433222 1 13689999952 2223 3 5667
Q ss_pred CcEEEEec
Q 011884 398 VNNVVNYD 405 (475)
Q Consensus 398 ~~~Vv~~~ 405 (475)
+++||+-.
T Consensus 131 ~~~vViDE 138 (556)
T 4a2p_A 131 FTLMIFDE 138 (556)
T ss_dssp CSEEEEET
T ss_pred CCEEEEEC
Confidence 88877644
No 480
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=56.03 E-value=4.7 Score=36.94 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=16.0
Q ss_pred CCCCCcEEEECCCCCchhH
Q 011884 21 GLFERDLCINSPTGSGKTL 39 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~ 39 (475)
+..|.-+.|.||+|+|||+
T Consensus 44 i~~Ge~~~liG~NGsGKST 62 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTT 62 (279)
T ss_dssp EETTCEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 3457778899999999997
No 481
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=55.83 E-value=23 Score=37.91 Aligned_cols=74 Identities=8% Similarity=0.066 Sum_probs=54.1
Q ss_pred cCCCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-c-----c------
Q 011884 324 LGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----T------ 390 (475)
Q Consensus 324 ~~~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-~-----~------ 390 (475)
..+.+++|.++|+..|.+.++.+.... ..++.+.++.|+++..+|.... ..+|+++|+- + .
T Consensus 150 L~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~ 223 (922)
T 1nkt_A 150 LAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHS 223 (922)
T ss_dssp TTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhcc
Confidence 346689999999999999998887764 3468999999999876655433 3689999962 1 1
Q ss_pred -cCCCCCCCcEEEE
Q 011884 391 -RGMDVEGVNNVVN 403 (475)
Q Consensus 391 -~GiDip~~~~Vv~ 403 (475)
..++..++.++|+
T Consensus 224 ~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 224 LDDLVQRGHHYAIV 237 (922)
T ss_dssp GGGCCCCCCCEEEE
T ss_pred HhhhccCCCCEEEE
Confidence 1356666777664
No 482
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=55.71 E-value=10 Score=43.81 Aligned_cols=41 Identities=20% Similarity=0.046 Sum_probs=28.9
Q ss_pred CCCCCCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEcc
Q 011884 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (475)
Q Consensus 20 ~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~P 64 (475)
.+..+.-++|.||+|+|||..++..+..... .+.+++|+.-
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~----~g~~VlyiS~ 768 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDA 768 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEECT
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHH----cCCCeEEEec
Confidence 4556788999999999999876665544332 2346888763
No 483
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=55.64 E-value=11 Score=36.20 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=23.8
Q ss_pred hcCCCCCCCcEEEECCCCCchhHHhHHHHHHHHh
Q 011884 17 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 50 (475)
Q Consensus 17 ~~~~~~~~~~~li~a~tGsGKT~~~~~~~~~~l~ 50 (475)
.+..+-.|+..+|.|+.|+|||..+. -+..++.
T Consensus 168 ~l~PigrGQR~lIfg~~g~GKT~Ll~-~Ia~~i~ 200 (427)
T 3l0o_A 168 LFAPIGKGQRGMIVAPPKAGKTTILK-EIANGIA 200 (427)
T ss_dssp HHSCCBTTCEEEEEECTTCCHHHHHH-HHHHHHH
T ss_pred hcccccCCceEEEecCCCCChhHHHH-HHHHHHh
Confidence 44556679999999999999997552 2444443
No 484
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=55.64 E-value=10 Score=36.96 Aligned_cols=36 Identities=25% Similarity=0.175 Sum_probs=23.0
Q ss_pred CCcEEEECCCCCchhHHhHHHHHHHHhhhhccccceEEEc
Q 011884 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~~~~~~~~l~~~~~~~~~vlil~ 63 (475)
+..+++.+++|+|||+++...+ ..+.. .+.+|+++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA-~~l~~---~g~~Vllvd 133 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLA-LYYKG---KGRRPLLVA 133 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH-HHHHT---TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHH---cCCeEEEee
Confidence 4557788999999998665433 33322 244676665
No 485
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=55.45 E-value=6.8 Score=34.77 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.3
Q ss_pred CcEEEECCCCCchhHHhHH
Q 011884 25 RDLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~~~ 43 (475)
..+.|.||+|||||.++-.
T Consensus 10 ~~i~i~G~~GsGKsTla~~ 28 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRG 28 (233)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999985533
No 486
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=55.42 E-value=5 Score=39.02 Aligned_cols=20 Identities=35% Similarity=0.311 Sum_probs=15.6
Q ss_pred CCCC--cEEEECCCCCchhHHh
Q 011884 22 LFER--DLCINSPTGSGKTLSY 41 (475)
Q Consensus 22 ~~~~--~~li~a~tGsGKT~~~ 41 (475)
..|. .++..|.||||||++.
T Consensus 135 l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 135 LDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HTTCCEEEEEESSTTSSHHHHH
T ss_pred HCCCceEEEEecCCCCCCeeEe
Confidence 3463 4777999999999875
No 487
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=55.26 E-value=6.9 Score=33.44 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.4
Q ss_pred cEEEECCCCCchhHHhHH
Q 011884 26 DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~ 43 (475)
.+.|.|++|||||.++-.
T Consensus 4 ~i~i~G~~GsGKst~~~~ 21 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARR 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999985533
No 488
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=55.20 E-value=3.3 Score=35.82 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=12.9
Q ss_pred EEEECCCCCchhHHh
Q 011884 27 LCINSPTGSGKTLSY 41 (475)
Q Consensus 27 ~li~a~tGsGKT~~~ 41 (475)
++|.|+.|||||+.+
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999754
No 489
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=55.16 E-value=5.3 Score=38.44 Aligned_cols=38 Identities=21% Similarity=0.086 Sum_probs=24.0
Q ss_pred ccchhhhhhhhh----cCCCCCCC--cEEEECCCCCchhHHhHH
Q 011884 6 LFPVQVAVWQET----IGPGLFER--DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 6 ~~~~Q~~a~~~~----~~~~~~~~--~~li~a~tGsGKT~~~~~ 43 (475)
+..-|.+.++.+ ++.+..|. .++..|.||||||++..-
T Consensus 111 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 111 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred cCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEecc
Confidence 344566665543 23334563 477899999999987543
No 490
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=55.07 E-value=4.9 Score=36.18 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=16.0
Q ss_pred CCCCCcEEEECCCCCchhH
Q 011884 21 GLFERDLCINSPTGSGKTL 39 (475)
Q Consensus 21 ~~~~~~~li~a~tGsGKT~ 39 (475)
+..|.-+.|.||+|+|||+
T Consensus 28 i~~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKST 46 (253)
T ss_dssp EETTCEEEEECCSSSSHHH
T ss_pred ECCCCEEEEECCCCCCHHH
Confidence 3457778899999999997
No 491
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=54.94 E-value=20 Score=38.07 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=50.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHhhcCC-CceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcCC-----cccC-C-CCCC
Q 011884 326 EEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-M-DVEG 397 (475)
Q Consensus 326 ~~~~lvf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~~-----~~~G-i-Dip~ 397 (475)
++++||.+|++..+.+..+.++.... .+..+..+||+.+...+...+ . +..+|+|+|.- +..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKV---I-EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHH---H-HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHh---h-CCCCEEEEchHHHHHHHHhcccccccc
Confidence 77999999999999999988887632 258899999998654432222 2 25789999942 2222 3 5566
Q ss_pred CcEEEEec
Q 011884 398 VNNVVNYD 405 (475)
Q Consensus 398 ~~~Vv~~~ 405 (475)
+++||+=.
T Consensus 372 ~~~iViDE 379 (797)
T 4a2q_A 372 FTLMIFDE 379 (797)
T ss_dssp CSEEEETT
T ss_pred CCEEEEEC
Confidence 78777643
No 492
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=54.87 E-value=9.3 Score=37.48 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=23.8
Q ss_pred hhhhhhhcCCCCCCCcEEEECCCCCchhHH
Q 011884 11 VAVWQETIGPGLFERDLCINSPTGSGKTLS 40 (475)
Q Consensus 11 ~~a~~~~~~~~~~~~~~li~a~tGsGKT~~ 40 (475)
..++..+ -.+..|+.+.|.||.|+|||..
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTL 173 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVL 173 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHH
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHH
Confidence 4577776 5677889999999999999974
No 493
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=54.87 E-value=6 Score=34.85 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=14.9
Q ss_pred CCCcEEEECCCCCchhHH
Q 011884 23 FERDLCINSPTGSGKTLS 40 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~ 40 (475)
.|.-+.|.|+.|||||+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTY 36 (230)
T ss_dssp CCEEEEEECSTTSCHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 356688999999999973
No 494
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=54.56 E-value=42 Score=31.50 Aligned_cols=78 Identities=13% Similarity=0.222 Sum_probs=49.2
Q ss_pred cccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCc
Q 011884 55 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 134 (475)
Q Consensus 55 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (475)
.+.++||.++++.-+..+++.+ .. .+..+..++|+.+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l---------------------------------------~~----~~~~~~~~~~~~~ 278 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKL---------------------------------------KS----EGHEVSILHGDLQ 278 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHH---------------------------------------HH----TTCCCEEECTTSC
T ss_pred cCCCEEEEeCCHHHHHHHHHHH---------------------------------------Hh----cCCcEEEeCCCCC
Confidence 3457999999999888854433 22 1567888888876
Q ss_pred hHHHHHHHhhccccccCccCCchhHHHhhhc-CCcEEEeCchHHHHHhhcCCCcccCCccEEEEcch
Q 011884 135 IADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 200 (475)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~ 200 (475)
..+..... +.+.. ..+|+|+|. .+. .+++++++++||.-+.
T Consensus 279 ~~~r~~~~------------------~~f~~g~~~vlv~T~-----~~~--~Gidip~~~~Vi~~~~ 320 (395)
T 3pey_A 279 TQERDRLI------------------DDFREGRSKVLITTN-----VLA--RGIDIPTVSMVVNYDL 320 (395)
T ss_dssp HHHHHHHH------------------HHHHTTSCCEEEECG-----GGS--SSCCCTTEEEEEESSC
T ss_pred HHHHHHHH------------------HHHHCCCCCEEEECC-----hhh--cCCCcccCCEEEEcCC
Confidence 55443222 22222 468999993 122 3577888999886443
No 495
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=54.50 E-value=22 Score=38.05 Aligned_cols=58 Identities=14% Similarity=0.055 Sum_probs=46.4
Q ss_pred cCCCeEEEEcCChHHHHHHHHHHhhcC-CCceeeEEeccccCHHHHHHHHHHHHcCCeEEEEEcC
Q 011884 324 LGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 387 (475)
Q Consensus 324 ~~~~~~lvf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~iLv~t~ 387 (475)
..+.+++|.++|+..|.+.++.+.... ..++.+..+.|+++..+|.... ..+|+++|+
T Consensus 118 L~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 118 LTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp TTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 346689999999999999998887764 3568999999999876665543 368999996
No 496
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=54.12 E-value=6.5 Score=41.80 Aligned_cols=17 Identities=41% Similarity=0.706 Sum_probs=15.0
Q ss_pred CcEEEECCCCCchhHHh
Q 011884 25 RDLCINSPTGSGKTLSY 41 (475)
Q Consensus 25 ~~~li~a~tGsGKT~~~ 41 (475)
+.+|+.||+|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999744
No 497
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=53.95 E-value=13 Score=32.26 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=19.1
Q ss_pred CCCcEEEECCCCCchhHHhHHHHHHHHh
Q 011884 23 FERDLCINSPTGSGKTLSYALPIVQTLS 50 (475)
Q Consensus 23 ~~~~~li~a~tGsGKT~~~~~~~~~~l~ 50 (475)
.|.-+++.|+.|+|||+.+-. +.+.+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~-l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDY-LAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHH-HHHHHH
Confidence 356688999999999986533 344443
No 498
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=53.63 E-value=1.3e+02 Score=30.14 Aligned_cols=81 Identities=16% Similarity=0.127 Sum_probs=51.1
Q ss_pred cccceEEEcccHHHHHHHhhhhhcccccccccccchhhhHHHhhhccccccccchhhHHHHHhhcccccceEeEccCCCc
Q 011884 55 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 134 (475)
Q Consensus 55 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (475)
.+.++||.|+|+.-++.+++.+ ..... .+..+..++|+.+
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L---------------------------------------~~~~~-~~~~v~~~hg~~~ 326 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSIL---------------------------------------KNEFK-KDLPILEFHGKIT 326 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHH---------------------------------------HHHHT-TTSCEEEESTTSC
T ss_pred CCCcEEEECCcHHHHHHHHHHH---------------------------------------HHhhc-CCCcEEEecCCCC
Confidence 4558999999999998855443 32211 2567888888876
Q ss_pred hHHHHHHHhhccccccCccCCchhHHHhhh-cCCcEEEeCchHHHHHhhcCCCcccCCccEEEEcch
Q 011884 135 IADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 200 (475)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~Tp~~l~~~l~~~~~~~~~~~~~lVvDE~ 200 (475)
........ +.+. ...+|+|+|.- +. .++.++++++||.-..
T Consensus 327 ~~~R~~~~------------------~~F~~g~~~vLVaT~~-----~~--~GiDip~v~~VI~~~~ 368 (579)
T 3sqw_A 327 QNKRTSLV------------------KRFKKDESGILVCTDV-----GA--RGMDFPNVHEVLQIGV 368 (579)
T ss_dssp HHHHHHHH------------------HHHHHCSSEEEEECGG-----GT--SSCCCTTCCEEEEESC
T ss_pred HHHHHHHH------------------HHhhcCCCeEEEEcch-----hh--cCCCcccCCEEEEcCC
Confidence 65443221 1222 24689999931 22 3577788888886553
No 499
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=53.41 E-value=6.5 Score=35.94 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=14.7
Q ss_pred cEEEECCCCCchhHHhHH
Q 011884 26 DLCINSPTGSGKTLSYAL 43 (475)
Q Consensus 26 ~~li~a~tGsGKT~~~~~ 43 (475)
-+.|.|+.|||||+++-.
T Consensus 77 iI~I~G~~GSGKSTva~~ 94 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQR 94 (281)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 488899999999986533
No 500
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=53.25 E-value=8.2 Score=41.03 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=15.1
Q ss_pred CCcEEEECCCCCchhHHh
Q 011884 24 ERDLCINSPTGSGKTLSY 41 (475)
Q Consensus 24 ~~~~li~a~tGsGKT~~~ 41 (475)
.+.+|+.||+|+|||+.+
T Consensus 511 ~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CSCCEEESSTTSSHHHHH
T ss_pred CceEEEecCCCCCchHHH
Confidence 367999999999999743
Done!