BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011888
(475 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 115/239 (48%), Gaps = 13/239 (5%)
Query: 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF 62
LQ+ + G + + V ++ D V+V +G +GDLLI ADG S +R +
Sbjct: 129 LQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVL 188
Query: 63 G--PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEP 120
G PQ Y+GY + G+ + A + F+G + V AG+ ++ P
Sbjct: 189 GFTPQRR-YAGYVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLP 247
Query: 121 AGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLG 180
AG + + + L + F GW V LI A D + R +I+D P RGRV LLG
Sbjct: 248 AGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIEPFSRLVRGRVALLG 307
Query: 181 DSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRV 239
D+ H+ P++GQGGC A+ED AV L +++ DI +AL+ YE R RV
Sbjct: 308 DAGHSTTPDIGQGGCAAMED----AVVLGAVFRQTR------DIAAALREYEAQRCDRV 356
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 107/220 (48%), Gaps = 13/220 (5%)
Query: 22 VIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFG--PQEAIYSGYTCYTGIA 79
V ++ D V+V +G +GDLLI ADG S +R + G PQ Y+GY + G+
Sbjct: 148 VTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRR-YAGYVNWNGLV 206
Query: 80 DFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFE 139
+ A + F+G + V AG+ ++ PAG + + + L + F
Sbjct: 207 EIDEALAPGDQWTTFVGEGKRVSLXPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFA 266
Query: 140 GWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIE 199
GW V LI A D + R +I+D P RGRV LLGD+ H+ P++GQGGC A E
Sbjct: 267 GWAPPVQKLIAALDPQTTNRIEIHDIEPFSRLVRGRVALLGDAGHSTTPDIGQGGCAAXE 326
Query: 200 DGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRV 239
D AV L +++ DI +AL+ YE R RV
Sbjct: 327 D----AVVLGAVFRQTR------DIAAALREYEAQRCDRV 356
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 113/267 (42%), Gaps = 53/267 (19%)
Query: 3 LQQILAKAV----GDEIILNESNVIDFKDHGDKVSVVLENG----QCYAGDLLIGADGIW 54
LQ IL AV G + + V ++ +V + +G Q D+L+GADGI
Sbjct: 109 LQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIH 168
Query: 55 SKVRKNLFGPQEAI-YSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDV------- 106
S VR +L Q + + G T + G+ +F FL K V++D
Sbjct: 169 SAVRAHLHPDQRPLSHGGITMWRGVTEF----------DRFLDGKTMIVANDEHWSRLVA 218
Query: 107 ----------GAGKMQWYAFHKEPA-GGVDGP-----EGKKERLLKIFEGWCDNVVDLI- 149
G + W A G +D +G+ E +L F W D+
Sbjct: 219 YPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRD 278
Query: 150 LATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELE 209
L T + IL+ + DR P+ WGRGR+TLLGD+ H M P G AI DG +LA L
Sbjct: 279 LLTRNQLILQYPMVDRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALA 338
Query: 210 KACKKSNESKTPIDIVSALKSYERARR 236
+ D+ +AL+ YE ARR
Sbjct: 339 RNA----------DVAAALREYEEARR 355
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs
Length = 402
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 111/267 (41%), Gaps = 53/267 (19%)
Query: 3 LQQILAKAV----GDEIILNESNVIDFKDHGDKVSVVLENG----QCYAGDLLIGADGIW 54
LQ IL AV G + + V ++ +V + +G Q D+L+GADGI
Sbjct: 109 LQXILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIH 168
Query: 55 SKVRKNLFGPQEAI-YSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQW 113
S VR +L Q + + G T + G+ +F FL K V++D ++
Sbjct: 169 SAVRAHLHPDQRPLSHGGITXWRGVTEF----------DRFLDGKTXIVANDEHWSRLVA 218
Query: 114 YAFHKEPA------------------GGVDGP-----EGKKERLLKIFEGWCDNVVDLI- 149
Y A G +D +G+ E +L F W D+
Sbjct: 219 YPISARHAAEGKSLVNWVCXVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRD 278
Query: 150 LATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELE 209
L T + IL+ DR P+ WGRGR+TLLGD+ H P G AI DG +LA L
Sbjct: 279 LLTRNQLILQYPXVDRDPLPHWGRGRITLLGDAAHLXYPXGANGASQAILDGIELAAALA 338
Query: 210 KACKKSNESKTPIDIVSALKSYERARR 236
+ D+ +AL+ YE ARR
Sbjct: 339 RNA----------DVAAALREYEEARR 355
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 22/213 (10%)
Query: 8 AKAVGDEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSKVRKNLFGPQE 66
A+A+G +I +N V D V + L+ G+ DL++GADG+ SKVR ++ Q+
Sbjct: 117 ARALGVDISVNSEAVA-----ADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQD 171
Query: 67 AIYSGYTCYTGIADFVPADI------ESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEP 120
S I + ++ ++ F Q + S ++ Y P
Sbjct: 172 RWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENEL--YLGLMAP 229
Query: 121 AGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAIL---RRDIYDRTPIFTWGRGRVT 177
A P G + E W + L E A L R D Y+ T + +W RG+V
Sbjct: 230 AAD---PRGSSVPI--DLEVWVEMFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRGKVA 284
Query: 178 LLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEK 210
L+GD+ HAM P L QG A+ + + L+ +LE+
Sbjct: 285 LVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE 317
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 40/222 (18%)
Query: 8 AKAVGDEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSKVRKNLFGPQE 66
A+A+G +I +N V D V + L+ G+ DL++GADG+ SKVR ++ Q+
Sbjct: 153 ARALGVDISVNSEAVA-----ADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQD 207
Query: 67 AIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDG 126
+ G+ + ++ LGH ++ + D+ + F +
Sbjct: 208 R----WVSKDGLIRLIVPRMKKE-----LGHGEWDNTIDM-------WNFWPRVQRILYS 251
Query: 127 PEGKKERLLKI---------------FEGWCDNVVDLILATDEEAIL---RRDIYDRTPI 168
P + E L + E W + L E A L R D Y+ T +
Sbjct: 252 PCNENELYLGLMAPAADPRGSSVPIDLEVWVEMFPFLEPCLIEAAKLKTARYDKYETTKL 311
Query: 169 FTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEK 210
+W RG+V L+GD+ HAM P L QG A+ + + L+ +LE+
Sbjct: 312 DSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE 353
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 22/213 (10%)
Query: 8 AKAVGDEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSKVRKNLFGPQE 66
A+A+G +I +N V D V + L+ G+ DL++GADG+ SKVR ++ Q+
Sbjct: 117 ARALGVDISVNSEAVA-----ADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQD 171
Query: 67 AIYSGYTCYTGIADFVPADI------ESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEP 120
S I + ++ ++ F Q + S ++ Y P
Sbjct: 172 RWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENEL--YLGLMAP 229
Query: 121 AGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDR---TPIFTWGRGRVT 177
A P G + E W + L E A L+ YD+ T + +W RG+V
Sbjct: 230 AAD---PRGSSVPI--DLEVWVEMFPFLEPCLIEAAKLKTARYDKAETTKLDSWTRGKVA 284
Query: 178 LLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEK 210
L+GD+ HAM P L QG A+ + + L+ +LE+
Sbjct: 285 LVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE 317
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 22/213 (10%)
Query: 8 AKAVGDEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSKVRKNLFGPQE 66
A+A+G +I +N V D V + L+ G+ DL++GADG+ SKVR ++ Q+
Sbjct: 117 ARALGVDISVNSEAVA-----ADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQD 171
Query: 67 AIYSGYTCYTGIADFVPADI------ESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEP 120
S I + ++ ++ F Q + S ++ Y P
Sbjct: 172 RWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENEL--YLGLMAP 229
Query: 121 AGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDR---TPIFTWGRGRVT 177
A P G + E W + L E A L+ YD+ T + +W RG+V
Sbjct: 230 AAD---PRGSSVPI--DLEVWVEMFPFLEPCLIEAAKLKTARYDKFETTKLDSWTRGKVA 284
Query: 178 LLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEK 210
L+GD+ HAM P L QG A+ + + L+ +LE+
Sbjct: 285 LVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE 317
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 93/216 (43%), Gaps = 28/216 (12%)
Query: 8 AKAVGDEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSKVRKNLFGPQE 66
A+A+G +I +N V D V + L+ G+ DL++GADG+ SKVR ++ Q+
Sbjct: 153 ARALGVDISVNSEAVA-----ADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQD 207
Query: 67 AIYSGYTCYTGIADFVPADIESVGY---------RVFLGHKQYFVSSDVGAGKMQWYAFH 117
S I VP + +G+ F Q + S ++ Y
Sbjct: 208 RWVSKDGL---IRLIVPRXKKELGHGEWDNTIDXWNFWPRVQRILYSPCNENEL--YLGL 262
Query: 118 KEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAIL---RRDIYDRTPIFTWGRG 174
PA P G + E W + L E A L R D Y+ T + +W RG
Sbjct: 263 XAPAAD---PRGSSVPI--DLEVWVEXFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRG 317
Query: 175 RVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEK 210
+V L+GD+ HA P L QG A + + L+ +LE+
Sbjct: 318 KVALVGDAAHAXCPALAQGAGCAXVNAFSLSQDLEE 353
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 107/291 (36%), Gaps = 37/291 (12%)
Query: 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF 62
L++IL K + + I N++ V + + +G D+L+GADG SKVRK
Sbjct: 114 LKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNSKVRKQYL 173
Query: 63 GPQEAIYSGYTCYTGIADFVPA--DIESVGYR--------------VFLGHKQYFVSSDV 106
E G + G A PA + +R +F+ + V+ V
Sbjct: 174 PFIERFDVGVSXIIGRARLTPALTALLPQNFRDGTPNSIVPKSPDWLFISXWRAPVNIHV 233
Query: 107 GAGKMQ------WYAFHKEPAGGVDGPEGKKERLLKIFEG----WCDNVVDLILATDEEA 156
A + W + + + E L + + W ++ L+ +D E
Sbjct: 234 EASLAEIDNFIVWVYVAATDSLPDNITDFSAEALCDLVQSRXISWDPSLHTLVQQSDXEN 293
Query: 157 ILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSN 216
I + + W VTLLGD++H P G G A+ D L +L
Sbjct: 294 ISPLHLRSXPHLLPWKSSTVTLLGDAIHNXTPXTGSGANTALRDALLLTQKLASVASGHE 353
Query: 217 ESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPL 267
E +V A+ YE+ R I G++ + S A + + PL
Sbjct: 354 E------LVKAISDYEQQXRAYANEIVGIS-----LRSAQNAVIHFSIPPL 393
>pdb|3ALM|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
pdb|3ALM|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
Length = 379
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 22/213 (10%)
Query: 8 AKAVGDEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSKVRKNLFGPQE 66
A+A+G +I +N V D V + L+ G+ DL++GADG+ SKVR ++ Q+
Sbjct: 117 ARALGVDISVNSEAVA-----ADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQD 171
Query: 67 AIYSGYTCYTGIADFVPADI------ESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEP 120
S I + ++ ++ F Q + S ++ Y P
Sbjct: 172 RWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENEL--YLGLMAP 229
Query: 121 AGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAIL---RRDIYDRTPIFTWGRGRVT 177
A P G + E W + L E A L R D Y+ T + +W RG+V
Sbjct: 230 AAD---PRGSSVPI--DLEVWVEMFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRGKVA 284
Query: 178 LLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEK 210
L+GD+ HAM P L QG A+ + + L+ +LE+
Sbjct: 285 LVGDAAHAMAPALAQGAGCAMVNAFSLSQDLEE 317
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 31/249 (12%)
Query: 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF 62
L+ IL ++ ++ ++ + ++ + K ++ EN DL+I A+G SKVRK
Sbjct: 110 LRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRK-FV 168
Query: 63 GPQEAIYSGYTCYTGIADFVPADIESVGY-------RVFLGHK-QYFVSSDVGAGKMQWY 114
E +G + AD +I G+ R+ H+ ++ G + +
Sbjct: 169 TDTEVEETG--TFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFG 226
Query: 115 AFHKEP-----AGGVDGPEGKK--ERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTP 167
K P VD + LLK F W + +LI AT L I+
Sbjct: 227 ISFKTPDEWKNQTQVDFQNRNSVVDFLLKKFSDWDERYKELIHATLSFVGLATRIFPLEK 286
Query: 168 IFTWGRGR---VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDI 224
W R +T++GD+ H M P GQG + D L+ L S I
Sbjct: 287 --PWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNS--------I 336
Query: 225 VSALKSYER 233
A+K+YE+
Sbjct: 337 EEAVKNYEQ 345
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 97/249 (38%), Gaps = 31/249 (12%)
Query: 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF 62
L+ IL ++ ++ ++ + ++ + K ++ EN DL+I A+G SKVRK
Sbjct: 130 LRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRK-FV 188
Query: 63 GPQEAIYSGYTCYTGIADFVPADIESVGY-------RVFLGHK-QYFVSSDVGAGKMQWY 114
E +G + AD +I G+ R+ H+ ++ G + +
Sbjct: 189 TDTEVEETG--TFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFG 246
Query: 115 AFHKEP-----AGGVDGPEGKK--ERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTP 167
K P VD + LLK F W + +LI T L I+
Sbjct: 247 ISFKTPDEWKNQTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVGLATRIFPLEK 306
Query: 168 IFTWGRGR---VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDI 224
W R +T++GD+ H M P GQG + D L+ L S I
Sbjct: 307 --PWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNS--------I 356
Query: 225 VSALKSYER 233
A+K+YE+
Sbjct: 357 EEAVKNYEQ 365
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 97/249 (38%), Gaps = 31/249 (12%)
Query: 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF 62
L+ IL ++ ++ ++ + ++ + K ++ EN DL+I A+G SKVRK
Sbjct: 130 LRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRK-FV 188
Query: 63 GPQEAIYSGYTCYTGIADFVPADIESVGY-------RVFLGHK-QYFVSSDVGAGKMQWY 114
E +G + AD +I G+ R+ H+ ++ G + +
Sbjct: 189 TDTEVEETG--TFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFG 246
Query: 115 AFHKEP-----AGGVDGPEGKK--ERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTP 167
K P VD + LLK F W + +LI T L I+
Sbjct: 247 ISFKTPDEWKNQTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVGLATRIFPLEK 306
Query: 168 IFTWGRGR---VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDI 224
W R +T++GD+ H M P GQG + D L+ L S I
Sbjct: 307 --PWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNS--------I 356
Query: 225 VSALKSYER 233
A+K+YE+
Sbjct: 357 EEAVKNYEQ 365
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 96/249 (38%), Gaps = 31/249 (12%)
Query: 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF 62
L+ IL ++ ++ ++ + ++ + K ++ EN DL+I A+G SKVRK
Sbjct: 130 LRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRK-FV 188
Query: 63 GPQEAIYSGYTCYTGIADFVPADIESVGY-------RVFLGHK-QYFVSSDVGAGKMQWY 114
E +G + AD +I G+ R+ H+ ++ G + +
Sbjct: 189 TDTEVEETG--TFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFG 246
Query: 115 AFHKEP-----AGGVDGPEGKK--ERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTP 167
K P VD + LLK F W +LI T L I+
Sbjct: 247 ISFKTPDEWKNQTQVDFQNRNSVVDFLLKEFSDWDKRYKELIHTTLSFVGLATRIFPLEK 306
Query: 168 IFTWGRGR---VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDI 224
W R +T++GD+ H M P GQG + D L+ L S I
Sbjct: 307 --PWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNS--------I 356
Query: 225 VSALKSYER 233
A+K+YE+
Sbjct: 357 EEAVKNYEQ 365
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 171 WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKS 230
W GRV L GD+ P G G A+ DG+ LA +L + + L +
Sbjct: 298 WREGRVFLAGDAAKVTPPTGGMSGNAAVADGFDLAWKLAAVLQGQAGA-------GLLDT 350
Query: 231 YERARRLRVAVIHGLARSAAVMASTYKAYL 260
YE R++ ++ +A + A+ A ++
Sbjct: 351 YEDERKVAAELV--VAEALAIYAQRMAPHM 378
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 95/249 (38%), Gaps = 31/249 (12%)
Query: 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF 62
L+ IL ++ ++ ++ + ++ + K ++ EN DL+I A+G SKVRK
Sbjct: 110 LRAILLNSLENDTVIWDRKLVXLEPGKKKWTLTFENKPSETADLVILANGGXSKVRK-FV 168
Query: 63 GPQEAIYSGYTCYTGIADFVPADIESVGY-------RVFLGHK-QYFVSSDVGAGKMQWY 114
E +G + AD +I G+ R+ H+ ++ G + +
Sbjct: 169 TDTEVEETG--TFNIQADIHQPEINCPGFFQLCNGNRLXASHQGNLLFANPNNNGALHFG 226
Query: 115 AFHKEP-----AGGVDGPEGKK--ERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTP 167
K P VD + LLK F W + +LI T L I+
Sbjct: 227 ISFKTPDEWKNQTQVDFQNRNSVVDFLLKKFSDWDERYKELIHTTLSFVGLATRIFPLEK 286
Query: 168 IFTWGRGR---VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDI 224
W R +T +GD+ H P GQG + D L+ L S I
Sbjct: 287 --PWKSKRPLPITXIGDAAHLXPPFAGQGVNSGLVDALILSDNLADGKFNS--------I 336
Query: 225 VSALKSYER 233
A+K+YE+
Sbjct: 337 EEAVKNYEQ 345
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 80/239 (33%), Gaps = 53/239 (22%)
Query: 7 LAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQE 66
L + G E ++ + V + +G + +IGADG S VRK L G E
Sbjct: 105 LYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKRLLG-IE 163
Query: 67 AIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFV---------------SSDVGAGKM 111
Y+GY + G+ P ++ + F Y + +++
Sbjct: 164 PTYAGYVTWRGV--LQPGEVADDVWNYFNDKFTYGLLDDGHLIAYPIPGRENAESPRLNF 221
Query: 112 QWYAFHKE---------PAGGVDGP----------------EGKKERLLKIFEGWCDNVV 146
QWY E G+ P K E L K F N
Sbjct: 222 QWYWNVAEGPDLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGESLFKPFRDLVLNAS 281
Query: 147 DLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLA 205
+ +A + R ++ GRV L+GD+ +P+ GG A +D LA
Sbjct: 282 SPFVTVVADATVDRMVH----------GRVLLIGDAAVTPRPHAAAGGAKASDDARTLA 330
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 95/249 (38%), Gaps = 31/249 (12%)
Query: 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF 62
L+ IL ++ ++ ++ + ++ + K ++ EN DL+I A+G SKVRK
Sbjct: 131 LRAILLNSLENDTVIWDRKLVXLEPGKKKWTLTFENKPSETADLVILANGGXSKVRK-FV 189
Query: 63 GPQEAIYSGYTCYTGIADFVPADIESVGY-------RVFLGHK-QYFVSSDVGAGKMQWY 114
E +G + AD +I G+ R+ H+ ++ G + +
Sbjct: 190 TDTEVEETG--TFNIQADIHQPEINCPGFFQLCNGNRLXASHQGNLLFANPNNNGALHFG 247
Query: 115 AFHKEP-----AGGVDGPEGKK--ERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTP 167
K P VD + LLK F W + +LI T L I+
Sbjct: 248 ISFKTPDEWKNQTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVGLATRIFPLEK 307
Query: 168 IFTWGRGR---VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDI 224
W R +T +GD+ H P GQG + D L+ L S I
Sbjct: 308 --PWKSKRPLPITXIGDAAHLXPPFAGQGVNSGLVDALILSDNLADGKFNS--------I 357
Query: 225 VSALKSYER 233
A+K+YE+
Sbjct: 358 EEAVKNYEQ 366
>pdb|2QA1|A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase
Involved In Angucycline Biosynthesis
Length = 500
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 173 RGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 208
RGRV L GDS H P GQG +I+D L +L
Sbjct: 276 RGRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKL 311
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 175 RVTLLGDSVHAMQPNLGQGGCMAIED----GYQLAVELEKAC 212
RV + GD+ H P GQG +++D G++LA L K C
Sbjct: 343 RVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVLRKQC 384
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 168 IFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 208
+ + RGRV L GDS H P GQG ++++D L +L
Sbjct: 272 VSAYRRGRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKL 312
>pdb|2JPE|A Chain A, Fha Domain Of Nipp1
Length = 140
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 382 IVIPSAQVSKMHARISYKDGA--FYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDT 439
I S++HA + Y +LIDL S HGT++ R+ + P + T
Sbjct: 68 FTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLG-----HIRLEPHKPQQIPIDST 122
Query: 440 IEFGSDKKA 448
+ FG+ +A
Sbjct: 123 VSFGASTRA 131
>pdb|2XT9|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 115
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 380 TSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVT 417
+ I + VS+ HA + G F ++D+ S +GTYV
Sbjct: 41 SDIFLDDVTVSRRHAEFRLEGGEFQVVDVGSLNGTYVN 78
>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent
Monooxygenase From Pseudomonas Aeruginosa
Length = 399
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 176 VTLLGDSVHAMQPNLGQGGCMAIE 199
V +LGD++H + P GQG +AIE
Sbjct: 288 VAMLGDAIHNVHPITGQGMNLAIE 311
>pdb|2KB4|A Chain A, Nmr Structure Of The Unphosphorylated Form Of Odhi, Odhi
Length = 143
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 380 TSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDT 439
+ I + VS+ HA +G F ++D+ S +GTYV + E R +V + D
Sbjct: 76 SDIFLDDVTVSRRHAEFRINEGEFEVVDVGSLNGTYV-NREPRNAQV-------MQTGDE 127
Query: 440 IEFGSDKKAIFRVKVIGTP 458
I+ G FR+ + P
Sbjct: 128 IQIGK-----FRLVFLAGP 141
>pdb|2KB3|A Chain A, Nmr Structure Of The Phosphorylated Form Of Odhi, Podhi
Length = 143
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 380 TSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDT 439
+ I + VS+ HA +G F ++D+ S +GTYV + E R +V + D
Sbjct: 76 SDIFLDDVTVSRRHAEFRINEGEFEVVDVGSLNGTYV-NREPRNAQV-------MQTGDE 127
Query: 440 IEFGSDKKAIFRVKVIGTP 458
I+ G FR+ + P
Sbjct: 128 IQIGK-----FRLVFLAGP 141
>pdb|3OBR|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype D
Binding Domain
pdb|3OBT|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype D
Ligand Binding Domain In Complex With
N-Acetylneuraminic Acid
Length = 434
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 11 VGDEIILNESNVIDFK--DHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL 61
VGD + LN DFK GDK+ V L N Y+ + W K+ K+L
Sbjct: 36 VGDNVQLNTIYTNDFKLSSSGDKIIVNLNNNILYSAIYENSSVSFWIKISKDL 88
>pdb|3RMY|A Chain A, Crystal Structure Of HcrD W1238A MUTANT
pdb|3RMY|B Chain B, Crystal Structure Of HcrD W1238A MUTANT
pdb|3RMY|C Chain C, Crystal Structure Of HcrD W1238A MUTANT
pdb|3RMY|D Chain D, Crystal Structure Of HcrD W1238A MUTANT
Length = 415
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 11 VGDEIILNESNVIDFK--DHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL 61
VGD + LN DFK GDK+ V L N Y+ + W K+ K+L
Sbjct: 30 VGDNVQLNTIYTNDFKLSSSGDKIIVNLNNNILYSAIYENSSVSFWIKISKDL 82
>pdb|3RMX|A Chain A, Crystal Structure Of HcrD F1240A MUTANT
pdb|3RMX|B Chain B, Crystal Structure Of HcrD F1240A MUTANT
pdb|3RMX|C Chain C, Crystal Structure Of HcrD F1240A MUTANT
pdb|3RMX|D Chain D, Crystal Structure Of HcrD F1240A MUTANT
Length = 415
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 11 VGDEIILNESNVIDFK--DHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL 61
VGD + LN DFK GDK+ V L N Y+ + W K+ K+L
Sbjct: 30 VGDNVQLNTIYTNDFKLSSSGDKIIVNLNNNILYSAIYENSSVSFWIKISKDL 82
>pdb|3OGG|A Chain A, Crystal Structure Of The Receptor Binding Domain Of
Botulinum Neurotoxin D
Length = 414
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 11 VGDEIILNESNVIDFK--DHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL 61
VGD + LN DFK GDK+ V L N Y+ + W K+ K+L
Sbjct: 29 VGDNVQLNTIYTNDFKLSSSGDKIIVNLNNNILYSAIYENSSVSFWIKISKDL 81
>pdb|3N7J|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype D
Binding Domain
Length = 415
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 11 VGDEIILNESNVIDFK--DHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL 61
VGD + LN DFK GDK+ V L N Y+ + W K+ K+L
Sbjct: 30 VGDNVQLNTIYTNDFKLSSSGDKIIVNLNNNILYSAIYENSSVSFWIKISKDL 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,818,599
Number of Sequences: 62578
Number of extensions: 656903
Number of successful extensions: 1373
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1332
Number of HSP's gapped (non-prelim): 51
length of query: 475
length of database: 14,973,337
effective HSP length: 102
effective length of query: 373
effective length of database: 8,590,381
effective search space: 3204212113
effective search space used: 3204212113
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)