Query 011888
Match_columns 475
No_of_seqs 487 out of 3374
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:20:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02927 antheraxanthin epoxid 100.0 1.4E-76 3E-81 615.5 51.1 472 2-475 195-668 (668)
2 PRK06753 hypothetical protein; 100.0 1E-32 2.2E-37 277.3 27.2 258 2-278 99-356 (373)
3 TIGR03219 salicylate_mono sali 100.0 5E-32 1.1E-36 275.9 26.6 243 2-252 106-372 (414)
4 PRK06617 2-octaprenyl-6-methox 100.0 2.2E-33 4.8E-38 281.8 15.2 261 2-293 105-373 (374)
5 PRK06475 salicylate hydroxylas 100.0 9.7E-32 2.1E-36 272.5 26.4 254 2-277 108-376 (400)
6 PRK07588 hypothetical protein; 100.0 6.3E-32 1.4E-36 273.3 23.9 261 2-279 104-368 (391)
7 PRK07236 hypothetical protein; 100.0 4.2E-31 9E-36 266.7 27.4 239 2-252 101-374 (386)
8 PRK08013 oxidoreductase; Provi 100.0 1.4E-32 3E-37 278.6 15.8 272 2-292 112-391 (400)
9 PRK08849 2-octaprenyl-3-methyl 100.0 5.3E-32 1.2E-36 272.9 17.4 264 2-292 111-383 (384)
10 PRK05868 hypothetical protein; 100.0 1.4E-30 3.1E-35 260.8 25.1 233 2-247 106-346 (372)
11 PRK05714 2-octaprenyl-3-methyl 100.0 1.1E-31 2.3E-36 272.9 16.0 271 2-293 113-395 (405)
12 COG0654 UbiH 2-polyprenyl-6-me 100.0 4E-31 8.6E-36 266.5 18.7 259 2-282 105-372 (387)
13 PRK08850 2-octaprenyl-6-methox 100.0 1.7E-31 3.6E-36 271.3 15.5 270 2-292 112-391 (405)
14 TIGR01989 COQ6 Ubiquinone bios 100.0 5.3E-31 1.2E-35 269.7 19.3 268 2-283 118-431 (437)
15 PRK07538 hypothetical protein; 100.0 7.1E-30 1.5E-34 259.9 26.7 235 2-249 103-362 (413)
16 PRK07045 putative monooxygenas 100.0 1.4E-29 3E-34 255.8 25.0 257 2-274 107-372 (388)
17 PRK06183 mhpA 3-(3-hydroxyphen 100.0 3.9E-30 8.5E-35 269.9 21.4 257 2-282 114-380 (538)
18 PRK08163 salicylate hydroxylas 100.0 2.8E-29 6.1E-34 254.4 26.7 239 2-252 110-355 (396)
19 PRK08773 2-octaprenyl-3-methyl 100.0 1.1E-30 2.3E-35 264.3 14.7 270 2-292 114-391 (392)
20 PRK08020 ubiF 2-octaprenyl-3-m 100.0 2E-30 4.3E-35 262.4 15.8 271 2-292 113-390 (391)
21 PRK06996 hypothetical protein; 100.0 4.7E-30 1E-34 259.8 16.8 263 2-291 116-393 (398)
22 PRK07494 2-octaprenyl-6-methox 100.0 2.3E-30 4.9E-35 261.7 13.8 269 2-292 112-386 (388)
23 PRK06847 hypothetical protein; 100.0 1.1E-28 2.3E-33 248.3 25.5 238 2-252 108-350 (375)
24 PRK06185 hypothetical protein; 100.0 4.3E-29 9.2E-34 254.0 22.4 270 2-290 109-391 (407)
25 PRK06834 hypothetical protein; 100.0 5.9E-29 1.3E-33 256.7 21.8 268 2-297 101-374 (488)
26 PRK07364 2-octaprenyl-6-methox 100.0 1.6E-29 3.5E-34 257.8 16.5 271 2-293 122-404 (415)
27 PRK07333 2-octaprenyl-6-methox 100.0 2.7E-29 5.8E-34 255.2 15.8 270 2-292 112-389 (403)
28 PRK08294 phenol 2-monooxygenas 100.0 8.9E-28 1.9E-32 254.5 24.7 237 2-252 142-411 (634)
29 KOG2614 Kynurenine 3-monooxyge 100.0 5E-28 1.1E-32 231.7 19.3 233 2-237 104-359 (420)
30 PRK09126 hypothetical protein; 100.0 1.5E-28 3.2E-33 248.8 16.3 260 2-282 111-377 (392)
31 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 1.4E-27 3E-32 240.9 22.6 238 2-254 104-351 (390)
32 PRK08244 hypothetical protein; 100.0 1.3E-27 2.8E-32 248.7 21.4 235 2-250 101-341 (493)
33 PRK08243 4-hydroxybenzoate 3-m 100.0 9.3E-28 2E-32 242.7 19.6 262 2-281 104-374 (392)
34 PRK06184 hypothetical protein; 100.0 3.3E-27 7.1E-32 246.1 23.7 232 2-251 110-350 (502)
35 TIGR01984 UbiH 2-polyprenyl-6- 100.0 3.6E-28 7.8E-33 245.1 14.8 257 2-282 106-370 (382)
36 PRK08132 FAD-dependent oxidore 100.0 5.6E-27 1.2E-31 246.7 22.4 253 2-280 126-391 (547)
37 PRK07190 hypothetical protein; 100.0 1.6E-26 3.4E-31 238.4 24.1 228 2-250 110-344 (487)
38 PRK07608 ubiquinone biosynthes 99.9 1.7E-27 3.7E-32 240.8 15.7 270 2-291 112-387 (388)
39 TIGR01988 Ubi-OHases Ubiquinon 99.9 3.8E-27 8.2E-32 237.9 17.8 260 2-282 107-373 (385)
40 PRK06126 hypothetical protein; 99.9 2.1E-26 4.6E-31 242.5 22.9 232 2-250 127-372 (545)
41 PRK05732 2-octaprenyl-6-methox 99.9 4.4E-27 9.5E-32 238.3 16.0 269 2-291 113-390 (395)
42 PF01494 FAD_binding_3: FAD bi 99.9 5.5E-27 1.2E-31 233.6 16.2 233 2-245 112-355 (356)
43 PTZ00367 squalene epoxidase; P 99.9 2.6E-24 5.7E-29 223.7 26.9 242 3-250 133-418 (567)
44 PLN02985 squalene monooxygenas 99.9 2.1E-24 4.6E-29 223.4 25.4 236 2-250 148-398 (514)
45 PRK08255 salicylyl-CoA 5-hydro 99.9 7E-22 1.5E-26 214.3 13.3 224 2-252 98-338 (765)
46 KOG3855 Monooxygenase involved 99.8 4.3E-21 9.3E-26 182.7 9.5 263 14-290 168-477 (481)
47 TIGR02032 GG-red-SF geranylger 99.8 5.1E-19 1.1E-23 171.8 20.2 197 2-208 92-295 (295)
48 TIGR02023 BchP-ChlP geranylger 99.8 4.3E-18 9.3E-23 171.9 23.1 219 2-245 93-327 (388)
49 PLN00093 geranylgeranyl diphos 99.8 1.6E-17 3.5E-22 169.6 23.6 225 2-246 133-377 (450)
50 PF08491 SE: Squalene epoxidas 99.8 2.3E-17 5.1E-22 152.9 20.5 218 44-276 2-221 (276)
51 PRK11445 putative oxidoreducta 99.8 2.1E-17 4.5E-22 164.6 20.4 208 2-239 100-317 (351)
52 TIGR02028 ChlP geranylgeranyl 99.8 1.3E-16 2.7E-21 161.4 24.0 222 2-243 94-335 (398)
53 PF00498 FHA: FHA domain; Int 99.7 1.1E-17 2.5E-22 124.7 8.5 67 367-443 1-68 (68)
54 TIGR01790 carotene-cycl lycope 99.7 6.6E-15 1.4E-19 148.9 22.0 222 2-241 86-321 (388)
55 COG0644 FixC Dehydrogenases (f 99.6 4.6E-14 1E-18 142.8 23.9 222 2-240 96-326 (396)
56 PRK10015 oxidoreductase; Provi 99.6 6.8E-14 1.5E-18 142.7 18.7 226 2-238 109-355 (429)
57 PRK10157 putative oxidoreducta 99.6 1.4E-13 3.1E-18 140.4 19.4 227 2-239 109-356 (428)
58 TIGR01789 lycopene_cycl lycope 99.6 7.8E-14 1.7E-18 139.4 17.0 218 2-247 90-315 (370)
59 cd00060 FHA Forkhead associate 99.5 4.8E-13 1E-17 108.2 11.9 97 341-452 2-100 (102)
60 TIGR03354 VI_FHA type VI secre 99.4 4.7E-13 1E-17 133.1 11.4 85 353-455 16-104 (396)
61 PLN02697 lycopene epsilon cycl 99.4 1.8E-11 4E-16 126.6 19.1 228 2-241 193-442 (529)
62 KOG1298 Squalene monooxygenase 99.3 4.5E-11 9.8E-16 113.7 17.4 221 19-247 167-395 (509)
63 PLN02463 lycopene beta cyclase 99.3 5.4E-11 1.2E-15 121.3 18.7 223 2-239 115-364 (447)
64 COG1716 FOG: FHA domain [Signa 99.3 1.1E-11 2.4E-16 112.4 9.7 69 365-445 89-157 (191)
65 KOG1882 Transcriptional regula 99.2 1.1E-11 2.5E-16 109.3 6.3 96 337-445 170-278 (293)
66 smart00240 FHA Forkhead associ 99.2 3.4E-11 7.5E-16 84.3 5.0 48 367-419 1-50 (52)
67 PF04820 Trp_halogenase: Trypt 99.1 1.6E-09 3.4E-14 111.2 16.1 216 2-246 155-378 (454)
68 COG3456 Predicted component of 99.1 2.4E-10 5.2E-15 110.1 9.0 85 354-456 19-106 (430)
69 KOG1881 Anion exchanger adapto 98.8 1.6E-09 3.5E-14 110.2 3.5 81 364-455 176-267 (793)
70 PF05834 Lycopene_cycl: Lycope 98.8 2E-07 4.4E-12 93.6 18.5 196 2-210 88-290 (374)
71 KOG1880 Nuclear inhibitor of p 98.5 9.4E-08 2E-12 87.7 4.0 102 338-454 16-119 (337)
72 KOG0615 Serine/threonine prote 97.5 0.00015 3.3E-09 70.5 6.1 86 354-454 57-157 (475)
73 KOG0245 Kinesin-like protein [ 97.2 0.0012 2.6E-08 70.8 8.1 84 356-455 472-557 (1221)
74 TIGR02500 type_III_yscD type I 97.2 0.0016 3.5E-08 66.1 8.8 76 354-445 13-89 (410)
75 KOG2293 Daxx-interacting prote 96.9 0.0022 4.8E-08 64.2 7.1 89 354-455 441-532 (547)
76 PRK12416 protoporphyrinogen ox 96.8 0.08 1.7E-06 54.9 17.6 51 2-52 227-277 (463)
77 TIGR00562 proto_IX_ox protopor 96.6 0.16 3.5E-06 52.5 18.6 52 3-54 227-278 (462)
78 TIGR02352 thiamin_ThiO glycine 96.6 0.078 1.7E-06 52.1 15.4 53 3-56 139-194 (337)
79 PRK12409 D-amino acid dehydrog 96.5 0.13 2.8E-06 52.3 16.7 52 5-56 201-259 (410)
80 KOG1892 Actin filament-binding 96.4 0.0083 1.8E-07 63.9 7.2 97 342-454 359-455 (1629)
81 PRK01747 mnmC bifunctional tRN 96.0 0.2 4.3E-06 54.5 16.1 54 3-56 410-464 (662)
82 TIGR01377 soxA_mon sarcosine o 96.0 0.24 5.2E-06 49.7 15.8 58 3-61 147-207 (380)
83 TIGR01663 PNK-3'Pase polynucle 96.0 0.031 6.8E-07 58.1 9.3 84 342-445 16-101 (526)
84 TIGR03197 MnmC_Cterm tRNA U-34 95.6 0.69 1.5E-05 46.5 17.1 54 3-56 137-191 (381)
85 PRK11883 protoporphyrinogen ox 95.6 0.78 1.7E-05 47.1 17.8 53 3-55 223-275 (451)
86 PF01266 DAO: FAD dependent ox 95.4 0.077 1.7E-06 52.4 9.3 54 3-57 149-205 (358)
87 PRK11259 solA N-methyltryptoph 95.3 0.42 9.1E-06 47.9 14.3 42 14-56 164-205 (376)
88 TIGR02730 carot_isom carotene 95.3 0.31 6.7E-06 51.0 13.6 59 3-61 231-292 (493)
89 TIGR01373 soxB sarcosine oxida 95.2 0.35 7.6E-06 49.1 13.4 55 6-61 188-247 (407)
90 TIGR02734 crtI_fam phytoene de 95.0 0.68 1.5E-05 48.5 15.0 59 3-61 221-282 (502)
91 PRK00711 D-amino acid dehydrog 94.8 0.91 2E-05 46.2 15.2 52 4-56 204-258 (416)
92 PLN02612 phytoene desaturase 94.1 0.93 2E-05 48.3 13.7 55 5-60 312-370 (567)
93 PLN02568 polyamine oxidase 93.8 0.17 3.8E-06 53.3 7.5 51 2-52 243-293 (539)
94 PRK07233 hypothetical protein; 93.2 2.9 6.4E-05 42.6 15.3 53 3-55 200-254 (434)
95 TIGR03467 HpnE squalene-associ 93.0 2.3 4.9E-05 43.1 14.0 49 7-55 203-254 (419)
96 PRK11728 hydroxyglutarate oxid 92.7 0.27 5.9E-06 49.7 6.8 58 3-61 151-211 (393)
97 PRK13369 glycerol-3-phosphate 92.4 3.5 7.6E-05 43.2 14.8 48 14-61 170-222 (502)
98 TIGR02733 desat_CrtD C-3',4' d 92.3 2.4 5.2E-05 44.3 13.4 52 2-53 233-292 (492)
99 PF13738 Pyr_redox_3: Pyridine 92.0 0.29 6.2E-06 44.2 5.3 45 15-59 98-142 (203)
100 KOG0241 Kinesin-like protein [ 91.9 0.47 1E-05 51.2 7.3 98 338-455 443-543 (1714)
101 PLN02676 polyamine oxidase 91.7 0.4 8.6E-06 50.0 6.7 44 14-57 245-288 (487)
102 PLN02576 protoporphyrinogen ox 91.5 6.2 0.00014 41.2 15.5 49 3-51 241-293 (496)
103 COG2081 Predicted flavoprotein 90.7 0.6 1.3E-05 46.3 6.2 57 2-58 112-170 (408)
104 PRK04176 ribulose-1,5-biphosph 90.5 0.44 9.6E-06 45.1 5.1 59 3-61 106-179 (257)
105 PRK12266 glpD glycerol-3-phosp 89.8 8.7 0.00019 40.3 14.6 43 14-56 170-217 (508)
106 PRK04965 NADH:flavorubredoxin 89.5 0.82 1.8E-05 45.9 6.5 44 14-57 198-241 (377)
107 PF01593 Amino_oxidase: Flavin 89.0 0.77 1.7E-05 46.4 6.0 44 15-58 225-268 (450)
108 TIGR00275 flavoprotein, HI0933 88.8 1 2.2E-05 45.7 6.6 53 3-56 107-161 (400)
109 PF13454 NAD_binding_9: FAD-NA 88.0 2.2 4.7E-05 37.0 7.3 38 16-53 118-155 (156)
110 COG1231 Monoamine oxidase [Ami 87.8 1.3 2.8E-05 44.7 6.2 36 15-50 222-257 (450)
111 PRK05249 soluble pyridine nucl 87.7 1.4 3.1E-05 45.5 7.0 56 4-59 219-276 (461)
112 TIGR00292 thiazole biosynthesi 87.6 0.97 2.1E-05 42.7 5.2 59 3-61 102-176 (254)
113 PRK05257 malate:quinone oxidor 86.9 1.3 2.9E-05 46.2 6.1 59 3-61 185-253 (494)
114 PRK15317 alkyl hydroperoxide r 86.2 1.8 3.8E-05 45.6 6.7 53 3-55 268-322 (517)
115 COG0579 Predicted dehydrogenas 85.7 1.7 3.7E-05 44.1 6.0 58 4-61 156-218 (429)
116 PF03486 HI0933_like: HI0933-l 85.5 1.4 3.1E-05 44.7 5.4 55 2-56 110-167 (409)
117 PLN02268 probable polyamine ox 85.5 2 4.4E-05 44.0 6.7 38 15-52 212-249 (435)
118 TIGR02732 zeta_caro_desat caro 83.8 29 0.00062 36.1 14.3 33 173-208 441-473 (474)
119 PF00070 Pyr_redox: Pyridine n 83.7 1.4 3.1E-05 33.1 3.5 26 14-39 55-80 (80)
120 PRK06116 glutathione reductase 83.2 3 6.6E-05 42.9 6.8 54 5-58 212-268 (450)
121 PLN02464 glycerol-3-phosphate 81.4 25 0.00053 38.1 13.1 59 3-61 234-303 (627)
122 PRK07846 mycothione reductase; 81.3 4.7 0.0001 41.6 7.4 45 14-58 221-265 (451)
123 PRK09231 fumarate reductase fl 80.9 4.7 0.0001 43.1 7.3 56 3-58 135-199 (582)
124 PTZ00383 malate:quinone oxidor 80.6 3.6 7.8E-05 43.0 6.2 46 15-61 233-280 (497)
125 PRK09754 phenylpropionate diox 80.4 3.9 8.4E-05 41.4 6.3 43 14-57 201-243 (396)
126 TIGR01292 TRX_reduct thioredox 80.2 4.2 9.1E-05 38.9 6.3 40 15-55 73-112 (300)
127 TIGR01320 mal_quin_oxido malat 79.4 2.9 6.3E-05 43.6 5.1 59 3-61 180-247 (483)
128 PLN02487 zeta-carotene desatur 79.0 69 0.0015 34.2 15.2 35 174-211 518-552 (569)
129 PRK09897 hypothetical protein; 78.9 5.6 0.00012 41.9 7.0 39 15-53 125-164 (534)
130 TIGR03140 AhpF alkyl hydropero 78.6 4.9 0.00011 42.3 6.6 42 14-55 282-323 (515)
131 PRK07845 flavoprotein disulfid 78.5 5.9 0.00013 41.1 7.0 45 14-58 233-277 (466)
132 TIGR01350 lipoamide_DH dihydro 77.6 6.1 0.00013 40.8 6.9 46 14-59 226-273 (461)
133 TIGR03452 mycothione_red mycot 77.3 7.6 0.00016 40.1 7.4 44 14-57 224-267 (452)
134 TIGR03378 glycerol3P_GlpB glyc 77.2 5.6 0.00012 40.4 6.1 55 2-56 264-324 (419)
135 PLN02507 glutathione reductase 76.0 7.6 0.00016 40.7 7.1 45 14-58 259-303 (499)
136 PRK05192 tRNA uridine 5-carbox 75.9 6.3 0.00014 42.0 6.4 41 15-56 117-158 (618)
137 PRK07804 L-aspartate oxidase; 75.9 5.6 0.00012 42.1 6.1 57 3-59 146-214 (541)
138 KOG2415 Electron transfer flav 75.7 96 0.0021 31.4 19.0 74 142-215 350-425 (621)
139 PRK06416 dihydrolipoamide dehy 75.2 7.4 0.00016 40.2 6.7 45 14-58 228-275 (462)
140 PRK13339 malate:quinone oxidor 75.1 7.9 0.00017 40.4 6.8 59 3-61 186-254 (497)
141 PTZ00363 rab-GDP dissociation 74.8 8.1 0.00017 39.7 6.7 51 3-53 234-288 (443)
142 PLN02328 lysine-specific histo 74.0 6 0.00013 43.7 5.8 48 3-54 439-486 (808)
143 TIGR00551 nadB L-aspartate oxi 73.6 7.5 0.00016 40.6 6.3 59 2-60 129-194 (488)
144 PLN02976 amine oxidase 70.7 11 0.00023 44.3 6.8 45 3-50 938-992 (1713)
145 PLN02529 lysine-specific histo 70.6 9.9 0.00021 41.7 6.4 45 3-51 359-403 (738)
146 TIGR01424 gluta_reduc_2 glutat 70.4 11 0.00025 38.7 6.7 45 14-58 222-266 (446)
147 COG1232 HemY Protoporphyrinoge 70.0 9.2 0.0002 39.2 5.7 48 2-50 216-263 (444)
148 COG0665 DadA Glycine/D-amino a 69.5 1.1E+02 0.0025 30.3 13.7 56 3-59 158-216 (387)
149 TIGR03329 Phn_aa_oxid putative 68.8 10 0.00022 39.2 6.0 52 3-56 185-238 (460)
150 PLN03000 amine oxidase 68.2 11 0.00025 41.8 6.3 45 3-51 383-427 (881)
151 TIGR01176 fum_red_Fp fumarate 67.8 16 0.00035 39.1 7.3 55 3-57 134-197 (580)
152 TIGR01812 sdhA_frdA_Gneg succi 67.7 12 0.00026 39.9 6.4 58 3-60 131-196 (566)
153 PRK07818 dihydrolipoamide dehy 64.5 18 0.00038 37.5 6.7 55 4-58 216-276 (466)
154 PRK06327 dihydrolipoamide dehy 64.1 17 0.00038 37.7 6.6 54 5-58 228-287 (475)
155 TIGR01813 flavo_cyto_c flavocy 63.3 17 0.00038 37.2 6.4 55 3-57 132-194 (439)
156 COG1233 Phytoene dehydrogenase 63.3 11 0.00025 39.2 5.1 51 2-52 225-278 (487)
157 COG2509 Uncharacterized FAD-de 63.2 14 0.0003 37.5 5.3 42 14-55 188-230 (486)
158 PF13275 S4_2: S4 domain; PDB: 61.2 6.6 0.00014 28.4 2.0 28 412-445 33-60 (65)
159 TIGR01423 trypano_reduc trypan 61.2 21 0.00045 37.3 6.5 55 4-58 234-291 (486)
160 PRK11507 ribosome-associated p 60.8 12 0.00026 27.4 3.3 28 412-445 37-64 (70)
161 PTZ00052 thioredoxin reductase 60.0 24 0.00052 37.0 6.8 54 5-58 226-281 (499)
162 PRK06912 acoL dihydrolipoamide 59.6 26 0.00057 36.1 7.0 54 4-58 214-271 (458)
163 PF01134 GIDA: Glucose inhibit 59.5 24 0.00053 35.5 6.3 39 15-54 112-151 (392)
164 KOG0685 Flavin-containing amin 58.9 13 0.00028 37.9 4.3 48 3-50 225-281 (498)
165 PLN02172 flavin-containing mon 58.5 37 0.00079 35.2 7.7 42 15-56 129-174 (461)
166 TIGR02374 nitri_red_nirB nitri 58.3 20 0.00042 40.0 6.1 43 14-56 197-239 (785)
167 PRK06115 dihydrolipoamide dehy 58.1 25 0.00055 36.4 6.6 55 4-58 218-279 (466)
168 COG1249 Lpd Pyruvate/2-oxoglut 58.0 29 0.00062 35.8 6.7 57 4-60 217-277 (454)
169 TIGR03862 flavo_PP4765 unchara 57.3 25 0.00055 35.2 6.1 52 2-55 87-141 (376)
170 COG2501 S4-like RNA binding pr 56.7 21 0.00045 26.4 3.9 30 410-445 35-64 (73)
171 PRK08010 pyridine nucleotide-d 55.6 33 0.00072 35.2 6.9 53 5-58 203-257 (441)
172 COG1251 NirB NAD(P)H-nitrite r 55.4 8.3 0.00018 41.5 2.4 41 15-55 203-243 (793)
173 PRK06467 dihydrolipoamide dehy 55.3 36 0.00079 35.3 7.2 54 5-58 219-277 (471)
174 TIGR01421 gluta_reduc_1 glutat 54.1 33 0.00072 35.3 6.6 54 5-58 211-268 (450)
175 TIGR02053 MerA mercuric reduct 53.8 34 0.00074 35.3 6.7 45 14-58 222-269 (463)
176 TIGR03364 HpnW_proposed FAD de 53.4 31 0.00068 34.1 6.2 49 3-56 147-198 (365)
177 PF06039 Mqo: Malate:quinone o 52.7 25 0.00054 36.0 5.1 54 3-56 183-245 (488)
178 TIGR02731 phytoene_desat phyto 52.5 27 0.00058 35.9 5.7 56 5-61 217-281 (453)
179 PF09465 LBR_tudor: Lamin-B re 52.4 27 0.00059 24.2 3.7 32 12-43 17-48 (55)
180 TIGR03385 CoA_CoA_reduc CoA-di 51.3 33 0.00071 35.0 6.0 42 14-57 194-235 (427)
181 PRK06370 mercuric reductase; V 51.1 43 0.00094 34.6 7.0 55 4-58 215-274 (463)
182 PRK05329 anaerobic glycerol-3- 50.8 45 0.00097 34.1 6.8 58 2-61 260-322 (422)
183 PTZ00318 NADH dehydrogenase-li 50.7 33 0.00072 35.0 5.9 38 14-55 243-280 (424)
184 COG1188 Ribosome-associated he 50.6 28 0.00062 27.4 4.1 34 414-455 36-69 (100)
185 PRK05945 sdhA succinate dehydr 50.1 47 0.001 35.5 7.1 55 3-57 137-199 (575)
186 PRK11101 glpA sn-glycerol-3-ph 49.8 28 0.00061 36.9 5.4 46 14-59 164-216 (546)
187 PRK14989 nitrite reductase sub 49.7 37 0.00079 38.2 6.4 44 14-57 202-247 (847)
188 PRK07251 pyridine nucleotide-d 49.2 43 0.00093 34.3 6.5 44 14-58 213-256 (438)
189 TIGR02485 CobZ_N-term precorri 49.2 34 0.00075 34.9 5.8 59 3-61 125-189 (432)
190 PRK14694 putative mercuric red 48.8 45 0.00097 34.5 6.6 44 14-58 233-276 (468)
191 PRK06481 fumarate reductase fl 47.0 49 0.0011 34.7 6.6 59 3-61 192-257 (506)
192 PF04710 Pellino: Pellino; In 46.7 62 0.0013 32.2 6.6 53 364-419 95-167 (416)
193 PF12831 FAD_oxidored: FAD dep 46.7 6.5 0.00014 40.3 0.0 46 14-59 105-154 (428)
194 COG5131 URM1 Ubiquitin-like pr 46.5 22 0.00047 27.2 2.7 43 400-445 48-92 (96)
195 PRK08274 tricarballylate dehyd 45.7 40 0.00086 34.9 5.7 59 3-61 133-198 (466)
196 PRK14727 putative mercuric red 44.8 62 0.0013 33.6 6.9 53 5-58 232-286 (479)
197 PRK13512 coenzyme A disulfide 44.7 48 0.001 34.0 6.0 49 5-57 193-243 (438)
198 PRK01777 hypothetical protein; 44.3 21 0.00045 28.1 2.5 29 410-445 48-76 (95)
199 PRK06292 dihydrolipoamide dehy 44.2 72 0.0016 32.9 7.3 45 14-58 224-271 (460)
200 PRK06069 sdhA succinate dehydr 43.6 62 0.0013 34.6 6.9 57 3-59 139-204 (577)
201 PRK09564 coenzyme A disulfide 43.2 55 0.0012 33.5 6.2 42 14-56 206-247 (444)
202 KOG1346 Programmed cell death 43.0 19 0.0004 36.2 2.5 45 15-59 409-455 (659)
203 TIGR01438 TGR thioredoxin and 42.8 65 0.0014 33.6 6.7 54 5-58 224-282 (484)
204 KOG2820 FAD-dependent oxidored 42.1 3.2E+02 0.007 27.0 10.5 47 15-61 169-220 (399)
205 TIGR03377 glycerol3P_GlpA glyc 41.8 57 0.0012 34.3 6.2 43 14-56 143-191 (516)
206 KOG1335 Dihydrolipoamide dehyd 41.5 88 0.0019 31.3 6.7 54 3-58 258-317 (506)
207 PF00743 FMO-like: Flavin-bind 40.4 70 0.0015 33.8 6.5 44 15-58 102-153 (531)
208 PRK08401 L-aspartate oxidase; 40.4 72 0.0016 33.0 6.6 57 3-60 122-180 (466)
209 TIGR03169 Nterm_to_SelD pyridi 40.0 49 0.0011 32.8 5.2 38 14-55 206-243 (364)
210 PRK07208 hypothetical protein; 38.9 63 0.0014 33.4 6.0 55 3-57 220-282 (479)
211 TIGR02988 YaaA_near_RecF S4 do 36.7 29 0.00064 24.2 2.1 25 412-442 34-58 (59)
212 PRK06175 L-aspartate oxidase; 36.6 93 0.002 31.9 6.6 55 3-57 130-191 (433)
213 PRK10262 thioredoxin reductase 36.5 1.2E+02 0.0026 29.4 7.2 54 3-56 187-249 (321)
214 PF01479 S4: S4 domain; Inter 35.5 25 0.00054 23.3 1.5 23 411-440 25-48 (48)
215 PRK07121 hypothetical protein; 35.4 1.1E+02 0.0023 32.0 6.9 54 3-56 179-240 (492)
216 KOG1336 Monodehydroascorbate/f 34.6 65 0.0014 33.0 4.8 43 15-57 271-315 (478)
217 cd01764 Urm1 Urm1-like ubuitin 33.8 36 0.00078 26.6 2.4 28 414-444 62-89 (94)
218 PRK13748 putative mercuric red 33.6 1.1E+02 0.0023 32.6 6.8 44 14-58 325-368 (561)
219 PRK05976 dihydrolipoamide dehy 32.7 1.3E+02 0.0028 31.1 7.0 45 14-58 236-284 (472)
220 TIGR00136 gidA glucose-inhibit 32.2 1.1E+02 0.0024 32.9 6.3 41 15-56 113-155 (617)
221 COG3380 Predicted NAD/FAD-depe 31.7 35 0.00077 32.4 2.3 44 7-50 110-155 (331)
222 PF14478 DUF4430: Domain of un 31.7 31 0.00068 25.0 1.6 12 431-442 56-67 (68)
223 KOG4254 Phytoene desaturase [C 31.7 52 0.0011 33.6 3.5 56 6-61 269-327 (561)
224 PRK09754 phenylpropionate diox 31.4 98 0.0021 31.2 5.8 40 15-56 74-113 (396)
225 PTZ00058 glutathione reductase 30.5 1.3E+02 0.0028 32.1 6.6 54 5-58 282-339 (561)
226 PRK09564 coenzyme A disulfide 29.8 1.2E+02 0.0026 31.0 6.2 42 15-56 72-116 (444)
227 KOG3851 Sulfide:quinone oxidor 29.8 17 0.00037 35.2 -0.1 35 20-56 112-146 (446)
228 PF00890 FAD_binding_2: FAD bi 29.8 1E+02 0.0022 31.1 5.7 54 3-56 143-204 (417)
229 PRK06854 adenylylsulfate reduc 29.5 1.6E+02 0.0034 31.8 7.1 54 3-56 134-196 (608)
230 PRK06134 putative FAD-binding 29.3 1.5E+02 0.0032 31.7 6.9 53 4-56 220-279 (581)
231 smart00363 S4 S4 RNA-binding d 29.1 66 0.0014 21.5 2.9 27 411-444 25-52 (60)
232 PRK09507 cspE cold shock prote 28.7 1.4E+02 0.0031 21.7 4.7 49 389-442 1-52 (69)
233 PF10387 DUF2442: Protein of u 27.2 98 0.0021 23.0 3.7 25 22-46 1-26 (79)
234 cd00754 MoaD Ubiquitin domain 26.7 58 0.0013 24.0 2.4 27 411-444 49-75 (80)
235 cd01721 Sm_D3 The eukaryotic S 26.6 1.1E+02 0.0024 22.3 3.8 25 29-54 10-34 (70)
236 PRK06437 hypothetical protein; 26.0 71 0.0015 23.1 2.7 24 413-443 38-61 (67)
237 KOG4146 Ubiquitin-like protein 25.9 71 0.0015 24.7 2.6 42 401-445 54-97 (101)
238 PF08804 gp32: gp32 DNA bindin 25.5 69 0.0015 24.9 2.5 20 397-416 40-59 (94)
239 PRK08071 L-aspartate oxidase; 25.3 1.6E+02 0.0034 31.0 6.1 55 3-57 132-192 (510)
240 TIGR01687 moaD_arch MoaD famil 25.2 56 0.0012 24.8 2.1 27 413-444 57-83 (88)
241 TIGR01292 TRX_reduct thioredox 25.2 2.6E+02 0.0057 26.2 7.4 43 14-56 192-239 (300)
242 PRK06944 sulfur carrier protei 24.8 52 0.0011 23.3 1.8 13 431-443 47-59 (65)
243 PRK12837 3-ketosteroid-delta-1 24.8 2.1E+02 0.0046 30.0 7.1 42 14-55 189-236 (513)
244 PRK06488 sulfur carrier protei 24.4 45 0.00097 23.8 1.3 13 431-443 47-59 (65)
245 TIGR01683 thiS thiamine biosyn 24.1 58 0.0013 23.2 1.9 12 431-442 46-57 (64)
246 cd00565 ThiS ThiaminS ubiquiti 23.9 71 0.0015 22.8 2.3 13 431-443 47-59 (65)
247 PF07992 Pyr_redox_2: Pyridine 23.7 60 0.0013 28.7 2.4 44 15-58 74-125 (201)
248 KOG1336 Monodehydroascorbate/f 23.3 1.5E+02 0.0032 30.6 5.1 43 15-60 143-185 (478)
249 COG5276 Uncharacterized conser 23.1 7E+02 0.015 24.2 9.4 104 337-454 136-240 (370)
250 PRK07843 3-ketosteroid-delta-1 23.0 2.4E+02 0.0053 29.9 7.1 51 5-55 212-270 (557)
251 PRK08275 putative oxidoreducta 22.6 1.9E+02 0.004 30.8 6.2 55 3-57 139-202 (554)
252 PF10819 DUF2564: Protein of u 22.2 1E+02 0.0022 23.1 2.8 32 179-210 19-51 (79)
253 PF09138 Urm1: Urm1 (Ubiquitin 21.7 38 0.00083 26.6 0.6 34 409-445 57-92 (96)
254 COG0492 TrxB Thioredoxin reduc 21.6 3E+02 0.0065 26.7 6.8 54 3-58 63-118 (305)
255 TIGR02374 nitri_red_nirB nitri 21.5 1.7E+02 0.0036 32.8 5.7 41 14-56 69-109 (785)
256 PRK05659 sulfur carrier protei 21.5 59 0.0013 23.2 1.5 12 431-442 48-59 (66)
257 KOG3842 Adaptor protein Pellin 21.4 1.6E+02 0.0035 28.3 4.6 53 364-419 108-180 (429)
258 COG2072 TrkA Predicted flavopr 21.4 2.6E+02 0.0057 28.7 6.8 41 15-55 100-144 (443)
259 PF14451 Ub-Mut7C: Mut7-C ubiq 21.2 86 0.0019 23.8 2.3 24 414-444 52-75 (81)
260 PF02626 AHS2: Allophanate hyd 20.9 1.6E+02 0.0034 28.1 4.6 32 409-445 52-83 (271)
261 cd01666 TGS_DRG_C TGS_DRG_C: 20.8 82 0.0018 23.5 2.1 16 425-442 58-73 (75)
262 TIGR03140 AhpF alkyl hydropero 20.8 2.9E+02 0.0063 29.0 7.1 42 14-55 403-450 (515)
263 PLN02546 glutathione reductase 20.8 2.4E+02 0.0053 30.0 6.5 45 14-58 308-353 (558)
264 PRK08053 sulfur carrier protei 20.6 69 0.0015 23.0 1.7 12 431-442 48-59 (66)
265 PRK06263 sdhA succinate dehydr 20.4 2.2E+02 0.0048 30.1 6.2 54 3-56 136-198 (543)
266 TIGR03385 CoA_CoA_reduc CoA-di 20.2 2.2E+02 0.0048 28.8 6.0 41 15-55 60-103 (427)
267 PRK10348 ribosome-associated h 20.2 1.3E+02 0.0028 25.2 3.4 35 413-455 35-69 (133)
No 1
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=1.4e-76 Score=615.50 Aligned_cols=472 Identities=73% Similarity=1.268 Sum_probs=418.8
Q ss_pred hHHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCcccceEEEEEEecc
Q 011888 2 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADF 81 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~ 81 (475)
+|+++|.++++...++++++|++++.++++|+|++++|+++++|+||||||++|.+|+.+++...+.|.++.+|+++++.
T Consensus 195 ~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~ 274 (668)
T PLN02927 195 TLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADF 274 (668)
T ss_pred HHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCC
Confidence 68899999887777899999999999999999999999999999999999999999999987777889999999988876
Q ss_pred CCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCCccceeecc
Q 011888 82 VPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRD 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (475)
.+.......+..|.++..+++.++..++.+.|+.+...+....+.++...+++++.|..|++.+.+++...+...+..+.
T Consensus 275 ~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~ 354 (668)
T PLN02927 275 IPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRD 354 (668)
T ss_pred CcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECCccccccchhHHHHHHHHhccCCHHHHHHHHhCccccceeee
Confidence 55443444456677888888888888887888777655433223345677889999999999999988876655566778
Q ss_pred cccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhHHHHH
Q 011888 162 IYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAV 241 (475)
Q Consensus 162 ~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~ 241 (475)
++.+.+..+|++|||+|+|||||+|+|+.|||+|+||+||..|+++|..+++.....+.+.+++.+|+.|+++|++++..
T Consensus 355 iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~ 434 (668)
T PLN02927 355 IYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAI 434 (668)
T ss_pred EEeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 88877778999999999999999999999999999999999999999887653222223456889999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCccceeEEecchhhhHHhhhcCCCCCCCCCCCceeCCcccch
Q 011888 242 IHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASD 321 (475)
Q Consensus 242 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (475)
++..+++...+...+..+.+.++.|+.+++.++++.+.+...|+++..+||+|++|+.+.+.+.++|++..|.+.|++++
T Consensus 435 i~~~ar~a~~~~~~~~~y~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (668)
T PLN02927 435 IHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRVPHPGRVGGRFFVDIAMPLMLDWVLGGNSEKLEGRPPSCRLTDKADD 514 (668)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCCCceeeeeeeecccHHHhhhhhcCCccccCCCCCccccccchhH
Confidence 99999999999988877767889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCchHHhhhcCCcEEEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEECC
Q 011888 322 NLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDG 401 (475)
Q Consensus 322 ~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~ 401 (475)
.+.+||++||++||+.++.|+|+|.++.+...++++|. +.++.+++|||.++++.+...|+|+++.||+.||+|.++++
T Consensus 515 ~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~l~-~~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~~~ 593 (668)
T PLN02927 515 RLREWFEDDDALERTIKGEWYLIPHGDDCCVSETLCLT-KDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKDG 593 (668)
T ss_pred HHHHHhcccHHHHHhhcCCeEEEecCCCCcccceeeee-cCCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEECC
Confidence 99999999999999999999999999998888999998 88899999999999997777789999999999999999999
Q ss_pred eEEEEEcCCccceeeccCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEEeccCCCCCcccccc--ccccccC
Q 011888 402 AFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGTPPNNNSERKEA--GEILQAV 475 (475)
Q Consensus 402 ~~~i~D~~S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 475 (475)
.|||+||+|+|||||||.+|+++++.|+.+..|++||+|+||+.+...|++++..++|+.. +++|. .++|++|
T Consensus 594 ~~~~~Dl~S~nGT~v~~~~~~r~~~~p~~~~~l~~~d~I~~g~~~~~~fr~~~~~~~~~~~-~~~~~~~~~~~~~~ 668 (668)
T PLN02927 594 AFFLMDLRSEHGTYVTDNEGRRYRATPNFPARFRSSDIIEFGSDKKAAFRVKVIRKTPKST-RKNESNNDKLLQTA 668 (668)
T ss_pred EEEEEECCCCCccEEeCCCCceEecCCCCceEeCCCCEEEeCCCcceeEEEEeecCCCcch-hhcccchhhhhhcC
Confidence 9999999999999999999999999999999999999999999888899999999999887 55554 5899876
No 2
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=1e-32 Score=277.35 Aligned_cols=258 Identities=29% Similarity=0.431 Sum_probs=193.7
Q ss_pred hHHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCcccceEEEEEEecc
Q 011888 2 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADF 81 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~ 81 (475)
+|+++|.+.+....++++++|++++.++++++|++++|+++++|+||||||.+|.||+.+.......|.+..++.+.+..
T Consensus 99 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~ 178 (373)
T PRK06753 99 TLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVRQSVNADSKVRYQGYTCFRGLIDD 178 (373)
T ss_pred HHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHHHHHhCCCCCceEcceEEEEEEecc
Confidence 57889999887778999999999998888999999999999999999999999999999865555667777777776542
Q ss_pred CCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCCccceeecc
Q 011888 82 VPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRD 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (475)
..........++ +..+..++++|..++...|++................+.+.+.|..|.+.+..++.......+..++
T Consensus 179 ~~~~~~~~~~~~-~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (373)
T PRK06753 179 IDLKLPDCAKEY-WGTKGRFGIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQSETGILHHD 257 (373)
T ss_pred ccccCccceEEE-EcCCCEEEEEEcCCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhCCcccceeec
Confidence 211122222333 3445566777888888777765432221111222345678888999988888777655443334455
Q ss_pred cccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhHHHHH
Q 011888 162 IYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAV 241 (475)
Q Consensus 162 ~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~ 241 (475)
++...+.++|+.|||+|+|||||+|+|++|||+|+||+||..|+++|.. .+.+++|+.|+++|++++..
T Consensus 258 ~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~-----------~~~~~al~~Y~~~r~~~~~~ 326 (373)
T PRK06753 258 IYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNA-----------YDFEKALQRYDKIRVKHTAK 326 (373)
T ss_pred cccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhh-----------ccHHHHHHHHHHHhhHHHHH
Confidence 6666667899999999999999999999999999999999999999953 24588999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCC
Q 011888 242 IHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHP 278 (475)
Q Consensus 242 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~ 278 (475)
++..++.+..+. ....++...+|+..+...
T Consensus 327 ~~~~s~~~~~~~-------~~~~~~~~~~r~~~l~~~ 356 (373)
T PRK06753 327 VIKRSRKIGKIA-------QIESKLLVALRNRVMKRM 356 (373)
T ss_pred HHHHHHHHhHHH-------hcCCchHHHHHHHHHHhC
Confidence 998888655432 334455677788766443
No 3
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=5e-32 Score=275.87 Aligned_cols=243 Identities=26% Similarity=0.419 Sum_probs=187.0
Q ss_pred hHHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccC-----CCCCcccceEEEE
Q 011888 2 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFG-----PQEAIYSGYTCYT 76 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~-----~~~~~~~~~~~~~ 76 (475)
+|.+.|.+.++...++++++|++++.++++++|++++|+++++|+||||||++|.||+.+.+ ...+.|.++.+|+
T Consensus 106 ~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r 185 (414)
T TIGR03219 106 DFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYR 185 (414)
T ss_pred HHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEE
Confidence 57788888887777899999999999888999999999999999999999999999999853 2446788888888
Q ss_pred EEeccCC--CC-----cC---CcceEEEecCceEEEEEeCCCCeE-EEEEEEeCCCC--------CCCCCcchHHHHHHH
Q 011888 77 GIADFVP--AD-----IE---SVGYRVFLGHKQYFVSSDVGAGKM-QWYAFHKEPAG--------GVDGPEGKKERLLKI 137 (475)
Q Consensus 77 ~~~~~~~--~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~l~~~ 137 (475)
++++... .. .+ .....+|.+.+.+++.+|..++.. .|+.+...+.. .........+++.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (414)
T TIGR03219 186 GLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDA 265 (414)
T ss_pred EEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHH
Confidence 8764211 00 00 012345677777888889888774 34444322211 111123456788899
Q ss_pred hhCCChHHHHHHHhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCC
Q 011888 138 FEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNE 217 (475)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~ 217 (475)
|..|.+.+.+++...... ..+.++...+.++|++|||+|+|||||+|+|+.|||+|+||+||..|+++|.....+
T Consensus 266 ~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~--- 340 (414)
T TIGR03219 266 FAGWGDAARALLECIPAP--TLWALHDLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELE--- 340 (414)
T ss_pred hcCCCHHHHHHHHhCCCC--CceeeeecccccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccC---
Confidence 999999998888766532 335566666778999999999999999999999999999999999999999875322
Q ss_pred CCChhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 011888 218 SKTPIDIVSALKSYERARRLRVAVIHGLARSAAVM 252 (475)
Q Consensus 218 ~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~ 252 (475)
..+++.+|+.|+++|++++..++.+|+....+
T Consensus 341 ---~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~ 372 (414)
T TIGR03219 341 ---AGDLPALLEAYDDVRRPRACRVQRTSREAGEL 372 (414)
T ss_pred ---cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 24678999999999999999999999876544
No 4
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=2.2e-33 Score=281.84 Aligned_cols=261 Identities=17% Similarity=0.149 Sum_probs=179.2
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccccccc-CCCCCcccceEEEEE
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTG 77 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~-~~~~~~~~~~~~~~~ 77 (475)
+|+++|++++.+ ..++++++++++.+++++|+|++.++ +++||+||||||++|+||+.+. +...+.| + .++.+
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~vR~~l~~~~~~~~y-~-~~~~~ 181 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSKVRSHYFANEIEKPY-Q-TALTF 181 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCchhHHhcCCCcccccC-C-eEEEE
Confidence 588899888754 36889999999999999999999776 8999999999999999999984 3334556 3 44444
Q ss_pred EeccCCCCcCCcceEEEecCceEEEEEeCCCCe-EEEEEEEeCCCCCCCCCcchHHHHHHHhhCC-ChHHHHHHHhCCcc
Q 011888 78 IADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFHKEPAGGVDGPEGKKERLLKIFEGW-CDNVVDLILATDEE 155 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~ 155 (475)
.+.. ........++.|...+. +.++|.+++. ..+++..+.. ..........+.+.+.+... .+.+.. +. ...
T Consensus 182 ~v~~-~~~~~~~~~~~~~~~g~-~~~lPl~~~~~~~~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~--~~~ 255 (374)
T PRK06617 182 NIKH-EKPHENCAMEHFLPLGP-FALLPLKDQYASSVIWSTSSD-QAALIVNLPVEEVRFLTQRNAGNSLGK-IT--IDS 255 (374)
T ss_pred EEec-cCCCCCEEEEEecCCCC-EEEeECCCCCeEEEEEeCCHH-HHHHHHcCCHHHHHHHHHHhhchhcCc-ee--ecc
Confidence 4332 12223334555555554 5556887764 3333322210 00000001112333222211 111111 10 111
Q ss_pred ceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHh
Q 011888 156 AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERAR 235 (475)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R 235 (475)
....++++.. .+.+|++|||+|+|||||+|+|++|||+|+||+||.+|+++|.. ..+|+.|+++|
T Consensus 256 ~~~~~~l~~~-~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~--------------~~~L~~Ye~~R 320 (374)
T PRK06617 256 EISSFPLKAR-IANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN--------------NGTLQEYQKLR 320 (374)
T ss_pred ceeEEEeeee-eccceecCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC--------------cchHHHHHHHH
Confidence 2344556654 66799999999999999999999999999999999999998831 25899999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCccc--eeEEecchhh
Q 011888 236 RLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAMPL 293 (475)
Q Consensus 236 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~g~ 293 (475)
++++..++.++.. +..+|++..+++..+|+++|..++++++ +++++++||.
T Consensus 321 ~~~~~~~~~~t~~-------l~~~f~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~ 373 (374)
T PRK06617 321 QEDNFIMYKLTDE-------LNNIFSNYSKNLRCLRQIGFKVINNFKPIKNLITSYAMGK 373 (374)
T ss_pred hHHHHHHHHHHHH-------HHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 9999988777665 4456777788899999999999999884 8888888764
No 5
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=9.7e-32 Score=272.47 Aligned_cols=254 Identities=24% Similarity=0.356 Sum_probs=185.5
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCeEEEEEc---CCcEEEecEEEEecCCCCcccccccCCCCCcccceEEE
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLE---NGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCY 75 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~---dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~~~ 75 (475)
+|+++|++++.. ..++++++|++++++++++++++. +++++++|+||||||++|.||+++ +...+.|.++.+|
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~-~~~~~~~~g~~~~ 186 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLRAKA-GFSKARFSGHIAW 186 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHhHHhhc-CCCCCCcCCceEE
Confidence 578899988743 369999999999998888988874 345799999999999999999998 3356778888888
Q ss_pred EEEeccC--CCCc-----CCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCC--CCCCCcchHHHHHHHhhCCChHHH
Q 011888 76 TGIADFV--PADI-----ESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAG--GVDGPEGKKERLLKIFEGWCDNVV 146 (475)
Q Consensus 76 ~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 146 (475)
++.+... +... +......|.+++..++.+|++++...+++....+.. .........+.+.+.|..|.+.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 266 (400)
T PRK06475 187 RTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPGEVWSKTGDKAHLKSIYADWNKPVL 266 (400)
T ss_pred EEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEEEcCCCCcccCCCCCCHHHHHHHhcCCChHHH
Confidence 8775321 1111 112245566788888889998776554443322211 111122346788899999999988
Q ss_pred HHHHhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHH
Q 011888 147 DLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVS 226 (475)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~ 226 (475)
.++..... ...++++.....+.|..|||+|||||||+|+|++|||+|+||+||..|+++|.. .+...
T Consensus 267 ~~i~~~~~--~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~-----------~~~~~ 333 (400)
T PRK06475 267 QILAAIDE--WTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS-----------DDQSA 333 (400)
T ss_pred HHHhcCCc--eeECcCcccCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc-----------CCHHH
Confidence 88876553 345677765544556789999999999999999999999999999999999953 13568
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCC
Q 011888 227 ALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPH 277 (475)
Q Consensus 227 ~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~ 277 (475)
+|+.|++.|++++..++..++.... +....++.+..|+..+..
T Consensus 334 aL~~Ye~~R~~r~~~~~~~s~~~~~--------~~~~~~~~~~~r~~~~~~ 376 (400)
T PRK06475 334 GLKRFDSVRKERIAAVAKRGQLNRF--------AYHATGIFALGRNMLFAI 376 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHhh
Confidence 9999999999999999887753221 222335566677766543
No 6
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=6.3e-32 Score=273.26 Aligned_cols=261 Identities=23% Similarity=0.287 Sum_probs=181.2
Q ss_pred hHHHHHhhccCC-CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccCCCC--CcccceEEEEEE
Q 011888 2 TLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQE--AIYSGYTCYTGI 78 (475)
Q Consensus 2 ~L~~~L~~~~~~-~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~--~~~~~~~~~~~~ 78 (475)
+|+++|++++.. .+++++++|+++++++++|+|++++|+++++|+||||||++|.||+.+.+... ..|.+...+...
T Consensus 104 ~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~ 183 (391)
T PRK07588 104 DLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACV 183 (391)
T ss_pred HHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccchhhccCCccceEEEcCcEEEEEE
Confidence 577888887766 47999999999999999999999999999999999999999999998743322 334443333322
Q ss_pred eccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCC-CCCCcchHHHHHHHhhCCChHHHHHHHhCCccce
Q 011888 79 ADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG-VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAI 157 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 157 (475)
.... .......+..|.+++..+..+|..++...+++....+... ....+...+.+.+.|..|.+....++........
T Consensus 184 ~~~~-~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 262 (391)
T PRK07588 184 VDGY-RPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVED 262 (391)
T ss_pred cCCC-CCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccc
Confidence 2111 1122233556667777888889887766555544332211 1122345666778888775544333332221111
Q ss_pred eecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhH
Q 011888 158 LRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRL 237 (475)
Q Consensus 158 ~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~ 237 (475)
..+........++|++|||+|+|||||.|+|+.|||+|+||+||.+|+++|.... .+...+|+.|++.|++
T Consensus 263 ~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~---------~~~~~al~~Y~~~R~~ 333 (391)
T PRK07588 263 LYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG---------GDHRRAFDAYEKRLRP 333 (391)
T ss_pred hheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHHH
Confidence 1111122235578999999999999999999999999999999999999997531 2357899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCC
Q 011888 238 RVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPG 279 (475)
Q Consensus 238 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~ 279 (475)
++..++..++.+ ..++.+..++...+|+..+....
T Consensus 334 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~R~~~~~~~~ 368 (391)
T PRK07588 334 FIAGKQAAAAKF-------LSVFAPKTRFGLYVRNIAMKIMN 368 (391)
T ss_pred HHHHHHhhcccc-------cccccCCCHHHHHHHHHHHHHhc
Confidence 999888777653 33445556667788888877766
No 7
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=4.2e-31 Score=266.66 Aligned_cols=239 Identities=26% Similarity=0.351 Sum_probs=176.8
Q ss_pred hHHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCcccceEEEEEEecc
Q 011888 2 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADF 81 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~ 81 (475)
.|.+.|.+.++...++++++|+++++++++|+|++++|++++||+||||||++|.||+.+++...+.|.++.+|.+++..
T Consensus 101 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~~ 180 (386)
T PRK07236 101 VLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDE 180 (386)
T ss_pred HHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHHHHhCCCCCCCcCCeEEEEEecch
Confidence 46778888887778999999999999899999999999999999999999999999999977667889998888877543
Q ss_pred CC--CCc---CCcceEEEecCceEEEEEeCCC---------CeEEEEEEEeCCCC-C------------C-------CCC
Q 011888 82 VP--ADI---ESVGYRVFLGHKQYFVSSDVGA---------GKMQWYAFHKEPAG-G------------V-------DGP 127 (475)
Q Consensus 82 ~~--~~~---~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~------------~-------~~~ 127 (475)
.. ... ....+.++.+++..++.+++++ ....|+++...+.. . + ...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (386)
T PRK07236 181 AALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALR 260 (386)
T ss_pred HHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccC
Confidence 21 111 0123445567776777777653 22455554433220 0 0 011
Q ss_pred cchHHHHHHHhhC-CChHHHHHHHhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHH
Q 011888 128 EGKKERLLKIFEG-WCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAV 206 (475)
Q Consensus 128 ~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~ 206 (475)
....+.+.+.+.. |.+.+..++...... ..++++.. ..++|..|||+|+|||||+|+|+.|||+|+||+||..|++
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~ 337 (386)
T PRK07236 261 DDVLAELRDDAAELLAPVFAELVEATAQP--FVQAIFDL-EVPRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAE 337 (386)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHhhCcCc--hhhhhhcc-cCcccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHH
Confidence 2234455555555 788888887665432 22345443 3468999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCChhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 011888 207 ELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVM 252 (475)
Q Consensus 207 ~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~ 252 (475)
+|.... .+...+|+.|+++|++++..++..++.....
T Consensus 338 ~L~~~~---------~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~ 374 (386)
T PRK07236 338 ALAAAA---------GDIDAALAAWEAERLAVGAAIVARGRRLGAR 374 (386)
T ss_pred HHHhcc---------cchHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 997631 2368999999999999999999988865543
No 8
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=1.4e-32 Score=278.58 Aligned_cols=272 Identities=16% Similarity=0.169 Sum_probs=177.4
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccc-cCCCCCcccceEEEEE
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCYTG 77 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~~~ 77 (475)
+|+++|.+.+.+ .+++++++|+++++++++|+|++++|++++|||||||||++|.||+.+ ++.....|.+... .+
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~-~~ 190 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSWLRNKADIPLTFWDYQHHAL-VA 190 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHHHHHcCCCccccccCcEEE-EE
Confidence 578888887754 379999999999998999999999999999999999999999999999 4445555665433 33
Q ss_pred EeccCCCCcCCcceEEEecCceEEEEEeCCCCe-EEEEEEEeCCCCCCCCCcchHHHHHHHhh-CCChHHHHHHHhCCcc
Q 011888 78 IADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFHKEPAGGVDGPEGKKERLLKIFE-GWCDNVVDLILATDEE 155 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 155 (475)
.+.. +.......+..|.+.+ .+..+|..++. ..+++..+.... ........+.+.+.+. .|.+.+... ....
T Consensus 191 ~v~~-~~~~~~~~~~~~~~~g-~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~-- 264 (400)
T PRK08013 191 TIRT-EEPHDAVARQVFHGDG-ILAFLPLSDPHLCSIVWSLSPEEA-QRMQQAPEEEFNRALAIAFDNRLGLC-ELES-- 264 (400)
T ss_pred EEec-cCCCCCEEEEEEcCCC-CEEEEECCCCCeEEEEEEcCHHHH-HHHHcCCHHHHHHHHHHHHhHhhCce-EecC--
Confidence 3321 1122223344555555 55566776543 344433221100 0000111223333322 111111100 0000
Q ss_pred ceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHh
Q 011888 156 AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERAR 235 (475)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R 235 (475)
....+++... .+++|++|||+|+|||||+|+|++|||+|+||+||.+|+++|..++..+ .+.....+|++|+++|
T Consensus 265 ~~~~~~l~~~-~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~----~~~~~~~~L~~Y~~~R 339 (400)
T PRK08013 265 ERQVFPLTGR-YARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQG----KDIGQHLYLRRYERSR 339 (400)
T ss_pred CccEEeccee-ecccccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHH
Confidence 0112233332 4679999999999999999999999999999999999999999876432 1112246899999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCccc--eeEEecchh
Q 011888 236 RLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAMP 292 (475)
Q Consensus 236 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~g 292 (475)
++++..++..++.+ ..+|....++...+|++++.++.+++. +++++++||
T Consensus 340 ~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~g 391 (400)
T PRK08013 340 KHSAALMLAGMQGF-------RDLFAGNNPAKKLLRDIGLKLADTLPGVKPQLIRQAMG 391 (400)
T ss_pred HHHHHHHHHHHHHH-------HHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHcc
Confidence 99998777665543 345566667788899999888877663 566666665
No 9
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.98 E-value=5.3e-32 Score=272.89 Aligned_cols=264 Identities=18% Similarity=0.210 Sum_probs=175.9
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccc-cCCCCCcccceEEEEE
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCYTG 77 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~~~ 77 (475)
.|+.+|++++.. .+++++++|++++.++++++|++++|++++||+||||||++|.||+.+ ++.....|.+......
T Consensus 111 ~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~ 190 (384)
T PRK08849 111 LIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLIN 190 (384)
T ss_pred HHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEE
Confidence 466777776543 479999999999999999999999999999999999999999999998 4555667766433322
Q ss_pred EeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCC--C-CCCCCcchHHHHHHHhhCCChHHHHHHHhCCc
Q 011888 78 IADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPA--G-GVDGPEGKKERLLKIFEGWCDNVVDLILATDE 154 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (475)
+ .. ........++.|...+...+ .|..++...++++..... . ....++...+.+.+.|..+...+ ..
T Consensus 191 ~-~~-~~~~~~~~~~~~~~~g~~~~-~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~ 260 (384)
T PRK08849 191 V-ET-EQPQQDITWQQFTPSGPRSF-LPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRHFPAELGEI-------KV 260 (384)
T ss_pred E-Ec-CCCCCCEEEEEeCCCCCEEE-eEcCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHhhhhhCcE-------Ee
Confidence 2 11 11222334444544444333 466544333322211100 0 00011222333333333221111 11
Q ss_pred cceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHH
Q 011888 155 EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERA 234 (475)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~ 234 (475)
.....+++. ...+++|++|||+|+|||||+|+|++|||+|+||+||.+|+++|... ..+.+++|+.|+++
T Consensus 261 ~~~~~~~l~-~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~---------~~~~~~~L~~Ye~~ 330 (384)
T PRK08849 261 LQHGSFPLT-RRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQ---------GVLNDASFARYERR 330 (384)
T ss_pred ccceEeecc-ccccchhccCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhc---------CCCcHHHHHHHHHH
Confidence 111122222 34567999999999999999999999999999999999999998642 12357899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCccc--eeEEecchh
Q 011888 235 RRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAMP 292 (475)
Q Consensus 235 R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~g 292 (475)
|++++..++..++. +..+|+...+++..+|+.+|...+++++ +.+++++||
T Consensus 331 R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g 383 (384)
T PRK08849 331 RRPDNLLMQTGMDL-------FYKTFSNSLTPLKFVRNAALKLAENSGPLKTQVLKYALG 383 (384)
T ss_pred HhHHHHHHHHHHHH-------HHHHhcCCchHHHHHHHHHHHHHhccHHHHHHHHHHHcC
Confidence 99999877655543 3446666777889999999999999885 777777765
No 10
>PRK05868 hypothetical protein; Validated
Probab=99.97 E-value=1.4e-30 Score=260.81 Aligned_cols=233 Identities=24% Similarity=0.316 Sum_probs=158.3
Q ss_pred hHHHHHhhccCCC-eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCcccceEEEEEEec
Q 011888 2 TLQQILAKAVGDE-IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIAD 80 (475)
Q Consensus 2 ~L~~~L~~~~~~~-~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~ 80 (475)
+|.++|.+.+... +++++++|+++++++++|+|+++||++++||+||||||++|.||+.+++........+..+..+..
T Consensus 106 ~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~ 185 (372)
T PRK05868 106 DLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFT 185 (372)
T ss_pred HHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchHHHHhcCCcccceeecceEEEEEE
Confidence 5677777766543 799999999999888999999999999999999999999999999985433222211112222221
Q ss_pred cCCCCcCCcceEE-EecCceEEEEEeCCCCeEEE-EEEEeCCC--CCCCCCcchHHHHHHHhh--CCC-hHHHHHHHhCC
Q 011888 81 FVPADIESVGYRV-FLGHKQYFVSSDVGAGKMQW-YAFHKEPA--GGVDGPEGKKERLLKIFE--GWC-DNVVDLILATD 153 (475)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~l~~~~~--~~~-~~~~~~~~~~~ 153 (475)
.+.......+.. +.+++.+++.+|..++...+ ++.+.... ..........+.+.+.|. .|. +.+.+.+...+
T Consensus 186 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~ 264 (372)
T PRK05868 186 -VPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAP 264 (372)
T ss_pred -cCCCCCCCcceEEEecCCcEEEEEecCCCCceEEEEEEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCC
Confidence 122122222333 45777777888887654322 22222111 111112345677888887 565 34444433222
Q ss_pred ccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHH
Q 011888 154 EEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYER 233 (475)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~ 233 (475)
. + .++.....+.++|++|||+|+|||||+|+|+.|||+|+||+||..|+++|... ..+++++|+.|++
T Consensus 265 ~--~-~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~---------~~~~~~al~~ye~ 332 (372)
T PRK05868 265 D--F-YFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA---------GDDYQLGFANYHA 332 (372)
T ss_pred c--e-eeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc---------CCCHHHHHHHHHH
Confidence 1 1 12212234567999999999999999999999999999999999999999663 2357899999999
Q ss_pred HhhHHHHHHHHHHH
Q 011888 234 ARRLRVAVIHGLAR 247 (475)
Q Consensus 234 ~R~~~~~~~~~~s~ 247 (475)
.++|++.+.|.+..
T Consensus 333 ~~~~~~~~~q~~~~ 346 (372)
T PRK05868 333 EFHGFVERNQWLVS 346 (372)
T ss_pred HHhHHHHHhhhhhh
Confidence 99999987776654
No 11
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.97 E-value=1.1e-31 Score=272.86 Aligned_cols=271 Identities=18% Similarity=0.241 Sum_probs=179.6
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccccccc-CCCCCcccceEEEEEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGI 78 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~-~~~~~~~~~~~~~~~~ 78 (475)
+|.++|.+.+.. ..++++++++++++++++++|++++|++++||+||||||++|.||+.+. ......|.+...+..
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~- 191 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTS- 191 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEE-
Confidence 466777777654 3688999999999999999999999999999999999999999999983 333445554333222
Q ss_pred eccCCCCcCCcceEEEecCceEEEEEeCCCCe-EEEE-EEEeCCCCC----C-CCCcchHHHHHHHhhCCChHHHHHHHh
Q 011888 79 ADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWY-AFHKEPAGG----V-DGPEGKKERLLKIFEGWCDNVVDLILA 151 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~~~~~~ 151 (475)
+. .+.......+..+ .++..+..+|.+.+. ..|+ +....+... . ...+...+++.+.|. ..+.+++..
T Consensus 192 ~~-~~~~~~~~~~~~~-~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~ 266 (405)
T PRK05714 192 VR-CSEPHRATAWQRF-TDDGPLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFE---GRLGEVLSA 266 (405)
T ss_pred EE-cCCCCCCEEEEEc-CCCCCeEEeeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHH---HHhCCceec
Confidence 21 1222222334443 444456667775432 1221 111111100 0 001111222333222 222222211
Q ss_pred CCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHH
Q 011888 152 TDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSY 231 (475)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y 231 (475)
. ....++++.. .+++|++|||+|+|||||+|+|++|||+|+||+||.+|+++|..+...+ .+.....+|+.|
T Consensus 267 ~---~~~~~~l~~~-~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g----~~~~~~~~L~~Y 338 (405)
T PRK05714 267 D---PRLCVPLRQR-HAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERG----ERLADVRVLSRF 338 (405)
T ss_pred C---CccEEeccee-ehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcC----CCcccHHHHHHH
Confidence 1 1233455553 5789999999999999999999999999999999999999998765322 112335899999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCccc--eeEEecchhh
Q 011888 232 ERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAMPL 293 (475)
Q Consensus 232 ~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~g~ 293 (475)
+++|++++..++..++. +..+|.+..+++..+|+.++...+..+. ++++++++|.
T Consensus 339 e~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~ 395 (405)
T PRK05714 339 ERRRMPHNLALMAAMEG-------FERLFQADPLPLRWLRNTGLKLVDQMPEAKALFVRQALGL 395 (405)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHCCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHhcC
Confidence 99999999988877765 3345667778899999999998888774 7888877753
No 12
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.97 E-value=4e-31 Score=266.50 Aligned_cols=259 Identities=24% Similarity=0.238 Sum_probs=172.2
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCeEEEEEc-CCcEEEecEEEEecCCCCccccccc-CCCCC-cccceEEE
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLE-NGQCYAGDLLIGADGIWSKVRKNLF-GPQEA-IYSGYTCY 75 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~-dG~~~~adlvVGADG~~S~vR~~l~-~~~~~-~~~~~~~~ 75 (475)
+|+++|.+++.+ .+++++++|+.++++++.|++++. ||++++|||||||||.||.||+.+. ..... .|.+. ++
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~-~l 183 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRDYGQT-AL 183 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcCCCCccCCCCCce-EE
Confidence 578899998854 389999999999999999999999 9999999999999999999999995 33333 56553 33
Q ss_pred EEEeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCC--CC-CcchHHHHHHHhhCCChHHHHHHHhC
Q 011888 76 TGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGV--DG-PEGKKERLLKIFEGWCDNVVDLILAT 152 (475)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~~~~~~~ 152 (475)
...+.. +.+.....+..|. +...+.++|.++.....++......... .. .+.....+.+.+....+ +.. ..
T Consensus 184 ~~~~~~-~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~ 257 (387)
T COG0654 184 VANVEP-EEPHEGRAGERFT-HAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLGERDP-LGR---VT 257 (387)
T ss_pred EEEeec-CCCCCCeEEEEec-CCCceEEEecCCCceeEEEECChhhHHHHhcCCHHHHHHHHHHhcCcccc-cce---EE
Confidence 322221 1233333444444 4445556677744333333222211110 00 11111222222222111 100 01
Q ss_pred CccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHH
Q 011888 153 DEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYE 232 (475)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~ 232 (475)
.......+++. ...+.+|.++||+|+|||||+|+|++|||+|+||+||.+|+++|..+...+ .+ ..+|+.|+
T Consensus 258 ~~~~~~~~pl~-~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~------~~-~~~L~~Y~ 329 (387)
T COG0654 258 LVSSRSAFPLS-LRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPG------AD-AAALAAYE 329 (387)
T ss_pred Ecccccccccc-chhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcC------cc-HHHHHHHH
Confidence 11111122222 234568889999999999999999999999999999999999999986632 12 79999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCcc
Q 011888 233 RARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG 282 (475)
Q Consensus 233 ~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 282 (475)
++|++++..++.++.. +...|....++.+.+|+.++......+
T Consensus 330 ~~R~~~~~~~~~~s~~-------~~~~~~~~~~~~~~~r~~~l~~~~~~~ 372 (387)
T COG0654 330 ARRRPRAEAIQKLSRA-------LGRLFSADGPFARFLRNLGLRLLDRLP 372 (387)
T ss_pred HhhhhHHHHHHHHHHH-------HhhhhccCCcHHHHHHHHHHHhhccCc
Confidence 9999999988877763 345667778888999999988876654
No 13
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.97 E-value=1.7e-31 Score=271.25 Aligned_cols=270 Identities=17% Similarity=0.189 Sum_probs=177.9
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccc-cCCCCCcccceEEEEE
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCYTG 77 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~~~ 77 (475)
.|++.|++++.. .+++++++|+++++++++++|++++|++++||+||||||++|.||+.+ ++.....|.+ .++.+
T Consensus 112 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~-~~~~~ 190 (405)
T PRK08850 112 VIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSWLRRQMDIPLTHWDYGH-SALVA 190 (405)
T ss_pred HHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCChhHHHcCCCeeEEeecc-EEEEE
Confidence 367788887643 378999999999998899999999999999999999999999999998 3444455644 45555
Q ss_pred EeccCCCCcCCcceEEEecCceEEEEEeCCCCe-EEEEEEEeCCCCC--CCCC-cchHHHHHHHhhCCChHHHHHHHhCC
Q 011888 78 IADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFHKEPAGG--VDGP-EGKKERLLKIFEGWCDNVVDLILATD 153 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~ 153 (475)
.+.. +.......+++ +++++.+..+|..++. +.|++..+..... ...+ +...+.+.+.|.. .+.. +....
T Consensus 191 ~v~~-~~~~~~~~~~~-~~~~g~~~~lp~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~-~~~~~ 264 (405)
T PRK08850 191 NVRT-VDPHNSVARQI-FTPQGPLAFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNKALTAEFDN---RLGL-CEVVG 264 (405)
T ss_pred EEEc-cCCCCCEEEEE-EcCCCceEEEECCCCCeEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhh---hhCc-EEEcc
Confidence 4432 22222223334 4554555666877543 3444333211000 0000 1112222222211 1100 00000
Q ss_pred ccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHH
Q 011888 154 EEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYER 233 (475)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~ 233 (475)
....+++.. ....+|+++||+|+|||||+|+|++|||+|+||+||.+|+++|......+ .+.....+|+.|++
T Consensus 265 --~~~~~pl~~-~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~----~~~~~~~~L~~Y~~ 337 (405)
T PRK08850 265 --ERQAFPLKM-RYARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQG----RDIGLKRNLRGYER 337 (405)
T ss_pred --cccEEecce-eeccccccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcC----CCcchHHHHHHHHH
Confidence 111223322 34578999999999999999999999999999999999999999876432 12335789999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCccc--eeEEecchh
Q 011888 234 ARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAMP 292 (475)
Q Consensus 234 ~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~g 292 (475)
+|++++..++.++.. +..+|....+++..+|++++.++..++. ++++++++|
T Consensus 338 ~R~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g 391 (405)
T PRK08850 338 WRKAEAAKMIAAMQG-------FRDLFSGSNPAKKLVRGIGMSLAGQLPGAKDEIMKRALG 391 (405)
T ss_pred HHhHHHHHHHHHHHH-------HHHHHCCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHhC
Confidence 999999988877754 3345566677788999999988888774 555555554
No 14
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.97 E-value=5.3e-31 Score=269.65 Aligned_cols=268 Identities=22% Similarity=0.264 Sum_probs=176.9
Q ss_pred hHHHHHhhccCC-----CeEEcCcEEEEEEe-------eCCeEEEEEcCCcEEEecEEEEecCCCCcccccc-cCCCCCc
Q 011888 2 TLQQILAKAVGD-----EIILNESNVIDFKD-------HGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAI 68 (475)
Q Consensus 2 ~L~~~L~~~~~~-----~~i~~~~~v~~v~~-------~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l-~~~~~~~ 68 (475)
+|+++|.+.+.. .+++++++|++++. ++++|+|++.+|++++|||||||||++|.||+.+ +......
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~ 197 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWN 197 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCcccee
Confidence 467777776542 36899999999975 2467999999999999999999999999999999 5666777
Q ss_pred ccceEEEEEEeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCC---CCCCcchHHHHHHHhh----CC
Q 011888 69 YSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG---VDGPEGKKERLLKIFE----GW 141 (475)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~----~~ 141 (475)
|.+...+. .+...........++.|...+ .+...|.+++...|++..+..... ...++...+.+.+.+. .|
T Consensus 198 y~q~~~v~-~v~~~~~~~~~~~~~~f~~~g-~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 275 (437)
T TIGR01989 198 YNQHAVVA-TLKLEEATENDVAWQRFLPTG-PIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDH 275 (437)
T ss_pred eccEEEEE-EEEcccCCCCCeEEEEECCCC-CEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhccccccc
Confidence 87754433 332211123334556665554 455568887776665543211000 0011122222323330 00
Q ss_pred Ch------HHHHH--------------------HHhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchh
Q 011888 142 CD------NVVDL--------------------ILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGC 195 (475)
Q Consensus 142 ~~------~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n 195 (475)
.. .+.++ +..........+++ ....+++|..+||+|+|||||.|+|++|||+|
T Consensus 276 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n 354 (437)
T TIGR01989 276 PYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPL-GLGHADEYVTKRVALVGDAAHRVHPLAGQGVN 354 (437)
T ss_pred ccccccccccccccccccccccccccccccCchhheeecccceeEEe-cccchhhccCCCEEEEchhhcCCCCChhhhHH
Confidence 00 00000 00000000122233 23456789999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhccc
Q 011888 196 MAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRI 275 (475)
Q Consensus 196 ~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l 275 (475)
+||+||.+|+++|..+.+.+ .+.....+|+.|+++|++++..++.+++. +..+|....+++..+|++++
T Consensus 355 ~~l~Da~~La~~L~~~~~~~----~~~~~~~~L~~Y~~~R~~~~~~v~~~t~~-------l~~l~~~~~~~~~~~R~~~l 423 (437)
T TIGR01989 355 LGFGDVASLVKALAEAVSVG----ADIGSISSLKPYERERYAKNVVLLGLVDK-------LHKLYATDFPPVVALRTFGL 423 (437)
T ss_pred HHHHHHHHHHHHHHHHHhcC----CChhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCccHHHHHHHHHH
Confidence 99999999999999887543 12233679999999999999988777664 34566777888899999999
Q ss_pred CCCCCccc
Q 011888 276 PHPGRVGG 283 (475)
Q Consensus 276 ~~~~~~~~ 283 (475)
.+++.+++
T Consensus 424 ~~~~~~~~ 431 (437)
T TIGR01989 424 NLTNYIGP 431 (437)
T ss_pred HHhhhCHH
Confidence 88877664
No 15
>PRK07538 hypothetical protein; Provisional
Probab=99.97 E-value=7.1e-30 Score=259.90 Aligned_cols=235 Identities=31% Similarity=0.412 Sum_probs=172.2
Q ss_pred hHHHHHhhccC----CCeEEcCcEEEEEEeeCCeEEEEEcCC-----cEEEecEEEEecCCCCcccccccCCC-CCcccc
Q 011888 2 TLQQILAKAVG----DEIILNESNVIDFKDHGDKVSVVLENG-----QCYAGDLLIGADGIWSKVRKNLFGPQ-EAIYSG 71 (475)
Q Consensus 2 ~L~~~L~~~~~----~~~i~~~~~v~~v~~~~~~v~v~~~dG-----~~~~adlvVGADG~~S~vR~~l~~~~-~~~~~~ 71 (475)
+|+++|++++. ...++++++|++++++++++.+.+.++ ++++||+||||||++|.||+++.+.. .+.|.+
T Consensus 103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~g 182 (413)
T PRK07538 103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYPDEGPPRWNG 182 (413)
T ss_pred HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHHHhhhhcCCCCCCcccc
Confidence 57788887753 236999999999998888887877654 38999999999999999999995433 678888
Q ss_pred eEEEEEEeccCCCCcCCcceEEEecCceEEEEEeCCCC-------eEEEEEEEeCCCC-----CCCCCcchHHHHHHHhh
Q 011888 72 YTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG-------KMQWYAFHKEPAG-----GVDGPEGKKERLLKIFE 139 (475)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~ 139 (475)
..+|++..+..+ ......+.++...+..++.+|..++ .+.|++....+.. .........+++++.|.
T Consensus 183 ~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (413)
T PRK07538 183 VMMWRGVTEAPP-FLTGRSMVMAGHLDGKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFA 261 (413)
T ss_pred eEEEEEeecCcc-ccCCCcEEEEcCCCCEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhc
Confidence 888887654321 1111222222223455777777653 5678776654321 11122345677888888
Q ss_pred CCChH---HHHHHHhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccC
Q 011888 140 GWCDN---VVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSN 216 (475)
Q Consensus 140 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~ 216 (475)
.|.+. +..++.... .+..++++...+.++|+.|||+|+|||||+|+|++|||+|+||+||..|+++|...
T Consensus 262 ~~~~~~~~~~~~i~~~~--~~~~~p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~----- 334 (413)
T PRK07538 262 DWRFDWLDVPALIRAAE--AIYEYPMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH----- 334 (413)
T ss_pred CCCCCcccHHHHHhcCc--ceeeccccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc-----
Confidence 88653 445554332 34556777777788999999999999999999999999999999999999999863
Q ss_pred CCCChhhHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 011888 217 ESKTPIDIVSALKSYERARRLRVAVIHGLARSA 249 (475)
Q Consensus 217 ~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~ 249 (475)
.+.+.+|+.|+++|++++..++..++..
T Consensus 335 -----~~~~~aL~~Ye~~R~~~~~~~~~~s~~~ 362 (413)
T PRK07538 335 -----GDPEAALAAYEAERRPATAQIVLANRLN 362 (413)
T ss_pred -----CCHHHHHHHHHHHhhHHHHHHHHHhhhc
Confidence 2368999999999999999998887763
No 16
>PRK07045 putative monooxygenase; Reviewed
Probab=99.97 E-value=1.4e-29 Score=255.83 Aligned_cols=257 Identities=19% Similarity=0.247 Sum_probs=169.0
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCe--EEEEEcCCcEEEecEEEEecCCCCccccccc--CCCCCcccceEE
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDK--VSVVLENGQCYAGDLLIGADGIWSKVRKNLF--GPQEAIYSGYTC 74 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~--v~v~~~dG~~~~adlvVGADG~~S~vR~~l~--~~~~~~~~~~~~ 74 (475)
+|+++|++.+.. .+++++++|++++.++++ +.|++++|+++++|+||||||++|.||+.+. +.....|.+...
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~ 186 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMA 186 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHHHhhCCCcccCCCCccee
Confidence 578888887642 479999999999987665 4688899999999999999999999999763 333344544333
Q ss_pred EEEEeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCC-hHHHHHHHhCC
Q 011888 75 YTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWC-DNVVDLILATD 153 (475)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 153 (475)
+ +.+... .........++..++.+++.+|..++...|++..+.+...........+.+.+.+..|. +.+.+.+....
T Consensus 187 ~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (388)
T PRK07045 187 F-GTIALT-DSVRECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIG 264 (388)
T ss_pred E-EEEecc-CCccccceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhccC
Confidence 3 333221 11222222223233455667788777766666544322111112233455666666654 33333333222
Q ss_pred cc-ceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHH
Q 011888 154 EE-AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYE 232 (475)
Q Consensus 154 ~~-~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~ 232 (475)
.. .+...++. ....++|+.|||+|+|||||+|+|++|||+|+||+||.+|+++|..++.+ ..+.+.+|+.|+
T Consensus 265 ~~~~~~~~~~~-~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~------~~~~~~~L~~Ye 337 (388)
T PRK07045 265 AGTAFPLIPLG-RMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSG------QIALADALERFE 337 (388)
T ss_pred cccccceeecC-ccccccccCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCC------chhHHHHHHHHH
Confidence 11 11112222 23557899999999999999999999999999999999999999886542 235688999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcc
Q 011888 233 RARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFR 274 (475)
Q Consensus 233 ~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 274 (475)
++|++++..++..++... ..|.+..+.+..+|...
T Consensus 338 ~~R~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 372 (388)
T PRK07045 338 RIRRPVNEAVISYGHALA-------TTYHDRAALVANFRSQL 372 (388)
T ss_pred HHhhhHHHHHHhhhHHHh-------hhcccchhHHHHHHhhh
Confidence 999999998887776543 23344445556666554
No 17
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.97 E-value=3.9e-30 Score=269.91 Aligned_cols=257 Identities=19% Similarity=0.258 Sum_probs=172.2
Q ss_pred hHHHHHhhccC---CCeEEcCcEEEEEEeeCCeEEEEEc--CC--cEEEecEEEEecCCCCcccccc-cCCCCCcccceE
Q 011888 2 TLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLE--NG--QCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYT 73 (475)
Q Consensus 2 ~L~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~v~~~--dG--~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~ 73 (475)
+|+++|.+.+. ...++++++|+++++++++|+|+++ +| ++++||+||||||++|+||+.+ .......|....
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~ 193 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERW 193 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceE
Confidence 46778887664 3479999999999999999999887 56 4799999999999999999998 333333443322
Q ss_pred EEEEEeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCC
Q 011888 74 CYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATD 153 (475)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 153 (475)
....+ ..............+++++..++.+|.+++...|.+........ ......+.+.+.+..|... ..
T Consensus 194 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~-------~~ 263 (538)
T PRK06183 194 LVVDV-LIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPGETE--EQLASPENVWRLLAPWGPT-------PD 263 (538)
T ss_pred EEEEE-ecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCCCCh--hhcCCHHHHHHHHHhhCCC-------Cc
Confidence 21111 11111111122345566666777778888877775544221111 1112345666666655210 01
Q ss_pred ccceeecccccC--CCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHH
Q 011888 154 EEAILRRDIYDR--TPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSY 231 (475)
Q Consensus 154 ~~~~~~~~~~~~--~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y 231 (475)
...+.....+.. ..+.+|++|||+|+|||||.|+|++|||+|+||+||.+|+|+|..++++ ...+.+|++|
T Consensus 264 ~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g-------~~~~~~L~~Y 336 (538)
T PRK06183 264 DAELIRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRG-------RAGDALLDTY 336 (538)
T ss_pred ceEEEEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcC-------CCcHHHHHHH
Confidence 111122222222 3357899999999999999999999999999999999999999987653 2347899999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCcc
Q 011888 232 ERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG 282 (475)
Q Consensus 232 ~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 282 (475)
+++|++++..++..+..+..+ +....+....+|+..+..+...+
T Consensus 337 e~eR~p~~~~~~~~s~~~~~~-------~~~~~~~~~~~R~~~l~~~~~~~ 380 (538)
T PRK06183 337 EQERRPHARAMIDLAVRLGRV-------ICPTDRLAAALRDAVLRALNYLP 380 (538)
T ss_pred HHHHHHHHHHHHHHHHHhhhh-------ccCCCHHHHHHHHHHHHhhhcCc
Confidence 999999999998888764433 33444556778887776655544
No 18
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.97 E-value=2.8e-29 Score=254.42 Aligned_cols=239 Identities=30% Similarity=0.439 Sum_probs=178.3
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCcccceEEEEEE
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGI 78 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~~~~~~ 78 (475)
+|.++|.+.+.. .++++++++++++.+++++++++.+|++++||+||||||.+|.+|+.+.+. .+.|.+..++.+.
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~ 188 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAV 188 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHHHhhccCC-CCCccccEEEEEE
Confidence 467788887643 468999999999988888999999999999999999999999999998544 4556666777766
Q ss_pred ecc--CCCCcCCcceEEEecCceEEEEEeCCCCeE-EEEEEEeCCC-CCCCCCcchHHHHHHHhhCCChHHHHHHHhCCc
Q 011888 79 ADF--VPADIESVGYRVFLGHKQYFVSSDVGAGKM-QWYAFHKEPA-GGVDGPEGKKERLLKIFEGWCDNVVDLILATDE 154 (475)
Q Consensus 79 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (475)
++. .+..........+.+++.+++.+|..++.. .+++...... ..........+++.+.|..|.+.+..++....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~- 267 (396)
T PRK08163 189 IDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPT- 267 (396)
T ss_pred EeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECCCCCcccccCCCCHHHHHHHHcCCChHHHHHHhcCC-
Confidence 542 111111222345667777888888877754 3333332221 11112233567889999999998887776543
Q ss_pred cceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHH
Q 011888 155 EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERA 234 (475)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~ 234 (475)
.+..+.++...+.++|+.|||+|+|||||+|+|++|||+|+||+||.+|+++|... ..+.+.+|+.|+++
T Consensus 268 -~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~---------~~~~~~al~~y~~~ 337 (396)
T PRK08163 268 -SWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC---------DGDAEAAFALYESV 337 (396)
T ss_pred -ceeEccccCCCcccccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc---------cccHHHHHHHHHHH
Confidence 23334455556678999999999999999999999999999999999999999752 13468899999999
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 011888 235 RRLRVAVIHGLARSAAVM 252 (475)
Q Consensus 235 R~~~~~~~~~~s~~~~~~ 252 (475)
|++++..++..++.+..+
T Consensus 338 R~~r~~~~~~~s~~~~~~ 355 (396)
T PRK08163 338 RIPRTARVVLSAREMGRI 355 (396)
T ss_pred HHHHHHHHHHHHHHhHHh
Confidence 999999999888765543
No 19
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.97 E-value=1.1e-30 Score=264.33 Aligned_cols=270 Identities=17% Similarity=0.173 Sum_probs=181.8
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccc-cCCCCCcccceEEEEEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCYTGI 78 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~~~~ 78 (475)
+|.+.|.+.+.. .+++++++|++++.++++++|++++|+++++|+||+|||.+|.+|+.+ +......|.+... ...
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~-~~~ 192 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAASTLRELAGLPVSRHDYAQRGV-VAF 192 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCchHHHhhcCCceEEEeccEEE-EEE
Confidence 466777776653 378999999999998889999999999999999999999999999987 3333344544322 222
Q ss_pred eccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCC---CCCCcchHHHHHHHhhCCChHHHHHHHhCCcc
Q 011888 79 ADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEE 155 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 155 (475)
+.. ..+.....++.|... ..+.++|.+++...|++..+..... ........+++.+.|..+...+. ...
T Consensus 193 v~~-~~~~~~~~~~~~~~~-g~~~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~-- 264 (392)
T PRK08773 193 VDT-EHPHQATAWQRFLPT-GPLALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELTQAFAARLGEVR----VAS-- 264 (392)
T ss_pred EEc-cCCCCCEEEEEeCCC-CcEEEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhcCeE----ecC--
Confidence 221 111222334444444 4455668877766555443221100 00111223344444443322111 011
Q ss_pred ceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHh
Q 011888 156 AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERAR 235 (475)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R 235 (475)
....+++.. ...++|+.|||+|+|||||+|+|++|||+|+||+||.+|+++|.+++..+ .+.....+|++|+++|
T Consensus 265 ~~~~~~l~~-~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~----~~~~~~~~l~~y~~~R 339 (392)
T PRK08773 265 PRTAFPLRR-QLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARR----ADWAAPHRLQRWARTR 339 (392)
T ss_pred CccEeechh-hhhhhhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHH
Confidence 111234443 35679999999999999999999999999999999999999999876542 1233468999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCccc--eeEEecchh
Q 011888 236 RLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAMP 292 (475)
Q Consensus 236 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~g 292 (475)
++++..+. ..++ .+..+|+++.+++.++|++++.+++.++. +++++++||
T Consensus 340 ~~~~~~~~------~~~~-~l~~~f~~~~~~~~~~r~~~l~~~~~~~~~k~~~~~~~~g 391 (392)
T PRK08773 340 RSDNTVAA------YGFD-AINRVFSNDEMHLTLLRGSVLGLAGKLPPLVDALWKRASG 391 (392)
T ss_pred HHHHHHHH------HHHH-HHHHHHcCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHcC
Confidence 99987332 2233 35678899999999999999999998884 778887765
No 20
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.97 E-value=2e-30 Score=262.42 Aligned_cols=271 Identities=19% Similarity=0.175 Sum_probs=178.8
Q ss_pred hHHHHHhhccC---CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccc-cCCCCCcccceEEEEE
Q 011888 2 TLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCYTG 77 (475)
Q Consensus 2 ~L~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~~~ 77 (475)
+|++.|.+.+. ..++++++++++++.++++++|++++|++++||+||+|||.+|.||+.+ ++...+.|.+...+.
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~- 191 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLI- 191 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEE-
Confidence 46777877653 3368899999999988888999999999999999999999999999998 455566777643333
Q ss_pred EeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhh-CCChHHHHHHHhCCccc
Q 011888 78 IADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFE-GWCDNVVDLILATDEEA 156 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 156 (475)
.+.. +.......++.+...+... .+|..++...+++... +...........+++.+.+. .|.+.+... ....
T Consensus 192 ~~~~-~~~~~~~~~~~~~~~g~~~-~~p~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~ 264 (391)
T PRK08020 192 SVKC-ENPPGDSTWQQFTPSGPRA-FLPLFDNWASLVWYDS-PARIRQLQAMSMAQLQQEIAAHFPARLGAV----TPVA 264 (391)
T ss_pred EEEe-cCCCCCEEEEEEcCCCCEE-EeECCCCcEEEEEECC-HHHHHHHHCCCHHHHHHHHHHHhhhhccce----Eecc
Confidence 3221 1222233344455444433 3466555443333221 10000000011223322221 222222111 1111
Q ss_pred eeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhh
Q 011888 157 ILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARR 236 (475)
Q Consensus 157 ~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~ 236 (475)
...+++... ..++|..+|++|+|||||+|+|++|||+|+||+||.+|+++|.+..+.+ .+.....+|+.|+++|+
T Consensus 265 ~~~~pl~~~-~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~----~~~~~~~~L~~Y~~~R~ 339 (391)
T PRK08020 265 AGAFPLTRR-HALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYG----EAWASEAVLKRYQRRRM 339 (391)
T ss_pred ccEeeccee-ehhhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHH
Confidence 223344432 4678999999999999999999999999999999999999999875432 12235789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCccc--eeEEecchh
Q 011888 237 LRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAMP 292 (475)
Q Consensus 237 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~g 292 (475)
++...++.. ++. +..+|++..++++.+|+++|.+++.++. +++++++||
T Consensus 340 ~~~~~~~~~------~~~-l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g 390 (391)
T PRK08020 340 ADNLLMQSG------MDL-FYAGFSNNLPPLRFARNLGLMAAQRAGVLKRQALKYALG 390 (391)
T ss_pred HHHHHHHHH------HHH-HHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHcC
Confidence 998754433 333 4567888889999999999999998774 778887775
No 21
>PRK06996 hypothetical protein; Provisional
Probab=99.97 E-value=4.7e-30 Score=259.84 Aligned_cols=263 Identities=16% Similarity=0.142 Sum_probs=174.8
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCC---cEEEecEEEEecCC-CCccccccc-CCCCCcccceEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENG---QCYAGDLLIGADGI-WSKVRKNLF-GPQEAIYSGYTC 74 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG---~~~~adlvVGADG~-~S~vR~~l~-~~~~~~~~~~~~ 74 (475)
+|+++|.+++.+ ..++++++++++++++++|++++.+| ++++||+||||||. +|.+|+.+. ......|.+ .+
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~-~~ 194 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQ-TA 194 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcCCCceeeecCC-eE
Confidence 578888888765 36889999999999999999999865 58999999999997 588888874 344445554 55
Q ss_pred EEEEeccCCCCcCCcceEEEecCceEEEEEeCCCCe---EEEEEEEeCCCC---CCCCCcchHHHHHHHhhCCChHHHHH
Q 011888 75 YTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK---MQWYAFHKEPAG---GVDGPEGKKERLLKIFEGWCDNVVDL 148 (475)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~ 148 (475)
+.+.+.. ....+...++.|...+. +..+|.+++. +.+++....... .........+.+.+.|..+.+.+
T Consensus 195 ~~~~v~~-~~~~~~~~~~~~~~~G~-~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--- 269 (398)
T PRK06996 195 IVGTVTV-SAPRPGWAWERFTHEGP-LALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAAFGTRMGRF--- 269 (398)
T ss_pred EEEEEEc-cCCCCCEEEEEecCCCC-eEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhccccCce---
Confidence 5555432 11223334444544444 5555776543 333332211100 00011123344444444322111
Q ss_pred HHhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHH
Q 011888 149 ILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSAL 228 (475)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L 228 (475)
. ...+ ...+++. ....++|+.|||+|+|||||+|+|++|||+|+||+||.+|+++|... .....+|
T Consensus 270 ~-~~~~--~~~~~l~-~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~----------~~~~~~L 335 (398)
T PRK06996 270 T-RIAG--RHAFPLG-LNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDH----------GATPLAL 335 (398)
T ss_pred E-Eecc--eEEEeee-cccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhc----------CCcHHHH
Confidence 0 0011 1123333 34456899999999999999999999999999999999999999652 1135779
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCccc--eeEEecch
Q 011888 229 KSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAM 291 (475)
Q Consensus 229 ~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~ 291 (475)
++|+++|++++..++..++.+. .+|....+++..+|++++.+++.++. +++++++|
T Consensus 336 ~~Y~~~R~~~~~~~~~~s~~l~-------~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~ 393 (398)
T PRK06996 336 ATFAARRALDRRVTIGATDLLP-------RLFTVDSRPLAHLRGAALTALEFVPPLKHALARQMM 393 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHcCCchHHHHHHhHHHHHHhhCHHHHHHHHHHHc
Confidence 9999999999998887777643 34556667788999999988888774 66666654
No 22
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.97 E-value=2.3e-30 Score=261.68 Aligned_cols=269 Identities=17% Similarity=0.173 Sum_probs=178.5
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccc-cCCCCCcccceEEEEEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCYTGI 78 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~~~~ 78 (475)
+|.+.|.+.+.. ...+++++|++++.++++++|++++|++++||+||+|||.+|.+|+.+ +......|.+. ++...
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~-~~~~~ 190 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSPVREAAGIGVRTWSYPQK-ALVLN 190 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCchhHHhcCCCceecCCCCE-EEEEE
Confidence 467788877653 245889999999998999999999999999999999999999999998 34344555553 33333
Q ss_pred eccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCC-ccce
Q 011888 79 ADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATD-EEAI 157 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~ 157 (475)
+.. +.+.....++++... +.+..+|.+++...+++....+. .........+++.+.+..+.+ ..+.... ....
T Consensus 191 v~~-~~~~~~~~~~~~~~~-g~~~~~Pl~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~ 264 (388)
T PRK07494 191 FTH-SRPHQNVSTEFHTEG-GPFTQVPLPGRRSSLVWVVRPAE-AERLLALSDAALSAAIEERMQ---SMLGKLTLEPGR 264 (388)
T ss_pred Eec-cCCCCCEEEEEeCCC-CcEEEEECCCCcEEEEEECCHHH-HHHHHcCCHHHHHHHHHHHHh---hhcCCeEEccCC
Confidence 221 111222234444444 44556687766655554322111 000001122344443332211 1111110 0112
Q ss_pred eecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhH
Q 011888 158 LRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRL 237 (475)
Q Consensus 158 ~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~ 237 (475)
..+++... ...+|..+||+|+|||||.++|++|||+|+||+||..|+++|..... +.....+|+.|+++|++
T Consensus 265 ~~~~l~~~-~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~-------~~~~~~~L~~Y~~~R~~ 336 (388)
T PRK07494 265 QAWPLSGQ-VAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPE-------DPGSAAVLAAYDRARRP 336 (388)
T ss_pred cEeechHH-HHHhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCC-------CcchHHHHHHHHHHHHH
Confidence 23444432 34689999999999999999999999999999999999999987421 23457899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCccc--eeEEecchh
Q 011888 238 RVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAMP 292 (475)
Q Consensus 238 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~g 292 (475)
++..++..+. . +...|+...++++.+|+++|.++++++. +++++++||
T Consensus 337 ~~~~~~~~~~------~-~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~ 386 (388)
T PRK07494 337 DILSRTASVD------L-LNRSLLSDFLPVQDLRAAGLHLLYSFGPLRRLFMREGLG 386 (388)
T ss_pred HHHHHHHHHH------H-HHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHhcC
Confidence 9975543332 2 4456778888899999999999998884 777777764
No 23
>PRK06847 hypothetical protein; Provisional
Probab=99.97 E-value=1.1e-28 Score=248.34 Aligned_cols=238 Identities=26% Similarity=0.362 Sum_probs=171.9
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccCC-CCCcccceEEEEEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGP-QEAIYSGYTCYTGI 78 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~-~~~~~~~~~~~~~~ 78 (475)
+|.+.|.+.+.. ..++++++|++++.++++++|++.+|+++++|+||+|||.+|.+|+.+.+. ..+.|.+..+|.+.
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~ 187 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAV 187 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcchhhHhcCCCCCceeccceEEEEE
Confidence 466777776643 379999999999988888999999999999999999999999999988543 45677777777665
Q ss_pred eccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChH-HHHHHHhCC-ccc
Q 011888 79 ADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDN-VVDLILATD-EEA 156 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~-~~~ 156 (475)
++.. ... ....+|.+++..+..+|..++...++.....+...........+.+.+.+..|.++ ...+..... ...
T Consensus 188 ~~~~-~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (375)
T PRK06847 188 LPRP-AEV--DRSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQ 264 (375)
T ss_pred ecCC-CCc--cceEEEeCCCcEEEEEcCCCCeEEEEEeccCcccccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccc
Confidence 4322 111 22356667777777788877766555443332221111223345677778888763 333332222 122
Q ss_pred eeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhh
Q 011888 157 ILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARR 236 (475)
Q Consensus 157 ~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~ 236 (475)
+..+++.......+|..|||+|+|||||+|+|++|||+|+||+||.+|+++|... ...+.+|+.|+++|+
T Consensus 265 ~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~----------~~~~~al~~Y~~~R~ 334 (375)
T PRK06847 265 VVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARH----------DSLEAALQAYYARRW 334 (375)
T ss_pred eeeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhC----------CcHHHHHHHHHHHHH
Confidence 3334444444456799999999999999999999999999999999999999752 346889999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 011888 237 LRVAVIHGLARSAAVM 252 (475)
Q Consensus 237 ~~~~~~~~~s~~~~~~ 252 (475)
+++..++..++....+
T Consensus 335 ~r~~~~~~~s~~~~~~ 350 (375)
T PRK06847 335 ERCRMVVEASARIGRI 350 (375)
T ss_pred HHHHHHHHHHHHhhhe
Confidence 9999999988865543
No 24
>PRK06185 hypothetical protein; Provisional
Probab=99.97 E-value=4.3e-29 Score=254.02 Aligned_cols=270 Identities=19% Similarity=0.170 Sum_probs=181.4
Q ss_pred hHHHHHhhccC---CCeEEcCcEEEEEEeeCCeE---EEEEcCCc-EEEecEEEEecCCCCcccccc-cCCCCCcccceE
Q 011888 2 TLQQILAKAVG---DEIILNESNVIDFKDHGDKV---SVVLENGQ-CYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYT 73 (475)
Q Consensus 2 ~L~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v---~v~~~dG~-~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~ 73 (475)
+|.+.|.+.+. ..+++++++++++..+++.+ ++...+|+ +++|++||+|||.+|.+|+.+ +......|.+..
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~ 188 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDV 188 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcCCCccccCCCcee
Confidence 46677777653 34789999999998877765 34445674 799999999999999999998 444455565544
Q ss_pred EEEEEeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCC
Q 011888 74 CYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATD 153 (475)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 153 (475)
.+.. .+. +.......++. +.++..+.+.|.+ +...+++..+.. ..........+.+.+.+..+.|.+...+....
T Consensus 189 ~~~~-~~~-~~~~~~~~~~~-~~~~g~~~llP~~-~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 263 (407)
T PRK06185 189 LWFR-LPR-EPDDPESLMGR-FGPGQGLIMIDRG-DYWQCGYVIPKG-GYAALRAAGLEAFRERVAELAPELADRVAELK 263 (407)
T ss_pred EEEe-cCC-CCCCCcccceE-ecCCcEEEEEcCC-CeEEEEEEecCC-CchhhhhhhHHHHHHHHHHhCccHHHHHhhcC
Confidence 4332 221 11111223443 4455556666775 544444333221 11111223445666666666665554444322
Q ss_pred c-cceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHH
Q 011888 154 E-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYE 232 (475)
Q Consensus 154 ~-~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~ 232 (475)
. .....+++. ...+.+|..+|++|+|||||.+||++|||+|+||+||..|+++|.++++.+ .....+|+.|+
T Consensus 264 ~~~~~~~~~l~-~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~------~~~~~~L~~Y~ 336 (407)
T PRK06185 264 SWDDVKLLDVR-VDRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRG------RVSDRDLAAVQ 336 (407)
T ss_pred CccccEEEEEe-ccccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccC------CccHHHHHHHH
Confidence 1 112222333 235678999999999999999999999999999999999999999887542 12348999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhhhhhcCCC--CccchhhhcccCCCCCccc--eeEEecc
Q 011888 233 RARRLRVAVIHGLARSAAVMASTYKAYLGVGL--GPLSFLTKFRIPHPGRVGG--RFFIDLA 290 (475)
Q Consensus 233 ~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~r~~~l~~~~~~~~--~~~~~~~ 290 (475)
++|++++..++.++.. +..+|++.. ++++++|+++|..++++++ +++++++
T Consensus 337 ~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~ 391 (407)
T PRK06185 337 RRREFPTRVTQALQRR-------IQRRLLAPALAGRGPLGPPLLLRLLNRLPWLRRLPARLV 391 (407)
T ss_pred HHhhhHHHHHHHHHHH-------HHHhhccccccCccccCCchHHHHHHhChhHHHhhHHhe
Confidence 9999999977665554 345566666 8899999999999998874 6666554
No 25
>PRK06834 hypothetical protein; Provisional
Probab=99.96 E-value=5.9e-29 Score=256.68 Aligned_cols=268 Identities=20% Similarity=0.193 Sum_probs=171.7
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccc-cCCCCCcccceEEEEEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCYTGI 78 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~~~~ 78 (475)
.|+++|.+.+.. ..++++++++++++++++|++++.+|+++++|+||||||++|.||+.+ +......|..... .+.
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~-~~d 179 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYL-IAE 179 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcHhhcCCCCCCCCcceEEE-EEE
Confidence 467788777654 379999999999999999999998888999999999999999999998 4555556654322 222
Q ss_pred eccCCCCcCCcceEEEecCceEEEEEeCC-CCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCC-hHHHHHHHhCCccc
Q 011888 79 ADFVPADIESVGYRVFLGHKQYFVSSDVG-AGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWC-DNVVDLILATDEEA 156 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ 156 (475)
+.. +.. .. +..+..+...+...|.. ++.+.+++..+.+ .... ....+++.+.+.... ..+. ......
T Consensus 180 v~~-~~~-~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~l~~~~g~~~~----~~~~~~ 248 (488)
T PRK06834 180 VEM-TEE-PE--WGVHRDALGIHAFGRLEDEGPVRVMVTEKQV--GATG-EPTLDDLREALIAVYGTDYG----IHSPTW 248 (488)
T ss_pred EEe-cCC-CC--cceeeCCCceEEEeccCCCCeEEEEEecCCC--CCCC-CCCHHHHHHHHHHhhCCCCc----ccccee
Confidence 211 111 11 11222333334444544 4544443332211 1111 122333333332211 1110 011111
Q ss_pred eeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhh
Q 011888 157 ILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARR 236 (475)
Q Consensus 157 ~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~ 236 (475)
+..++.. ...+++|++|||+|+|||||.|+|++|||||+||+||.+|+|+|+.++++ .+.+.+|++|+++|+
T Consensus 249 ~~~~~~~-~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g-------~~~~~lLd~Ye~eRr 320 (488)
T PRK06834 249 ISRFTDM-ARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKG-------TSPESLLDTYHAERH 320 (488)
T ss_pred EEecccc-ceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHH
Confidence 2222222 23567999999999999999999999999999999999999999998864 234789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCccc-eeEEecchhhhHHh
Q 011888 237 LRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG-RFFIDLAMPLMLSW 297 (475)
Q Consensus 237 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~-~~~~~~~~g~~~~~ 297 (475)
+++..++..+..+.. ++. ..+....+|+..+.+....+. +.+...++|+.++|
T Consensus 321 p~~~~~~~~t~~~~~-------~~~-~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~g~~~~y 374 (488)
T PRK06834 321 PVAARVLRNTMAQVA-------LLR-PDDRTEALRDIVAELLGMDEPRKRIAAMMSGLDIHY 374 (488)
T ss_pred HHHHHHHHHHHHHHH-------hhc-CChHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCccc
Confidence 999988876654332 222 345567888887776665543 55555556655554
No 26
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.96 E-value=1.6e-29 Score=257.77 Aligned_cols=271 Identities=20% Similarity=0.206 Sum_probs=174.7
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCeEEEEEcCC---cEEEecEEEEecCCCCccccccc-CCCCCcccceEE
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENG---QCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTC 74 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~dG---~~~~adlvVGADG~~S~vR~~l~-~~~~~~~~~~~~ 74 (475)
.|.++|++.+.. ..++++++++++++++++++|+++++ .+++||+||||||++|.||+.+. ......|.+ .+
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~-~~ 200 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQ-SC 200 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCchhHHHhCCCceeecCCC-EE
Confidence 466777776643 36899999999999888999988743 36999999999999999999883 333344433 23
Q ss_pred EEEEeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCC--CC-CCcchHHHHHHHhhCCChHHHHHHHh
Q 011888 75 YTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG--VD-GPEGKKERLLKIFEGWCDNVVDLILA 151 (475)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~~~~~~ 151 (475)
+...+.. +.......++.|... ..++.+|.+++...|++..+.+... .. ..+...+.+.+.+..|.+.+ ..
T Consensus 201 ~~~~~~~-~~~~~~~~~~~~~~~-g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~ 274 (415)
T PRK07364 201 VTATVKH-EAPHNDIAYERFWPS-GPFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQRYGDQLGKL----EL 274 (415)
T ss_pred EEEEEEc-cCCCCCEEEEEecCC-CCeEEeECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhhcCc----ee
Confidence 3333221 111222233334444 3466678887776665432211000 00 01122233333333332221 11
Q ss_pred CCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHH
Q 011888 152 TDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSY 231 (475)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y 231 (475)
.. ....+++... ..++|++||++|+|||||+|+|++|||+|+||+||.+|+++|...++.+ .+.....+|+.|
T Consensus 275 ~~--~~~~~~~~~~-~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~----~~~~~~~~L~~Y 347 (415)
T PRK07364 275 LG--DRFLFPVQLM-QSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRG----EDIGSLAVLKRY 347 (415)
T ss_pred cC--CCceecchhh-hhhhhcCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcC----CCcccHHHHHHH
Confidence 11 1122344332 3578999999999999999999999999999999999999998875432 111234899999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCccc--eeEEecchhh
Q 011888 232 ERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAMPL 293 (475)
Q Consensus 232 ~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~g~ 293 (475)
+++|++++..++.+++.+ ..+|....++..++|++.+.++.+++. +++++.+||+
T Consensus 348 ~~~R~~~~~~~~~~s~~~-------~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~ 404 (415)
T PRK07364 348 ERWRKRENWLILGFTDLL-------DRLFSNQWWPLVVVRRLGLWLLRHVPPLKRLALRLMTGL 404 (415)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHcCC
Confidence 999999998887776653 334556666778899998888877663 5666666653
No 27
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.96 E-value=2.7e-29 Score=255.20 Aligned_cols=270 Identities=18% Similarity=0.153 Sum_probs=178.0
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccc-cCCCCCcccceEEEEEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCYTGI 78 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~~~~ 78 (475)
+|.+.|.+.+.. ..++++++|++++++++++.|++++|+++++|+||||||.+|.+|+.+ +......|.+. ++...
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~-~~~~~ 190 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSKLRELAGIKTVGWDYGQS-GIVCT 190 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChHHHHHcCCCcccccCCCE-EEEEE
Confidence 467788877654 378999999999998999999999999999999999999999999988 33333445443 33333
Q ss_pred eccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCC---CCCCcchHHHHHHHhhCCChHHHHHHHhCCcc
Q 011888 79 ADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEE 155 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 155 (475)
.... ......... ++.++.++..+|.+++...|++..+..... ........+.+.+.|..|.+.+. ...
T Consensus 191 ~~~~-~~~~~~~~~-~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~-- 262 (403)
T PRK07333 191 VEHE-RPHGGRAEE-HFLPAGPFAILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQRFGHRLGELK----VLG-- 262 (403)
T ss_pred EEcC-CCCCCEEEE-EeCCCCceEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhcCceE----ecc--
Confidence 2211 111122223 334445566778888876665432110000 00011122333333433321110 000
Q ss_pred ceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHh
Q 011888 156 AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERAR 235 (475)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R 235 (475)
....+++. ....++|+.|||+|+|||||.++|++|||+|+||+||.+|+++|..+++.+ .+...+.+|+.|+++|
T Consensus 263 ~~~~~~~~-~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~----~~~~~~~~L~~Ye~~R 337 (403)
T PRK07333 263 KRRAFPLG-LTLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLG----LDIGSLDVLERYQRWR 337 (403)
T ss_pred CccEeech-hhhhhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHH
Confidence 11112222 134568999999999999999999999999999999999999999886532 1123589999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCccc--eeEEecchh
Q 011888 236 RLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAMP 292 (475)
Q Consensus 236 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~g 292 (475)
++++..++..++.+. .++....++...+|+..+.+...++. ++++++++|
T Consensus 338 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g 389 (403)
T PRK07333 338 RFDTVRMGVTTDVLN-------RLFSNDSTLLRSVRDIGLGLVDRLPKLKSFFIRQAAG 389 (403)
T ss_pred hHHHHHHHHHHHHHH-------HHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHhC
Confidence 999998876665433 34555666778889988888877663 677777765
No 28
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.96 E-value=8.9e-28 Score=254.54 Aligned_cols=237 Identities=16% Similarity=0.193 Sum_probs=151.9
Q ss_pred hHHHHHhhccCC----CeEEcCcEEEEEEeeCC---eEEEEEc------CC--cEEEecEEEEecCCCCcccccc-cCCC
Q 011888 2 TLQQILAKAVGD----EIILNESNVIDFKDHGD---KVSVVLE------NG--QCYAGDLLIGADGIWSKVRKNL-FGPQ 65 (475)
Q Consensus 2 ~L~~~L~~~~~~----~~i~~~~~v~~v~~~~~---~v~v~~~------dG--~~~~adlvVGADG~~S~vR~~l-~~~~ 65 (475)
.|+++|++.+.. ..+++++++++++++++ .|+|+++ +| ++++|||||||||++|.||+++ ++..
T Consensus 142 ~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~ 221 (634)
T PRK08294 142 RVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELR 221 (634)
T ss_pred HHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCcc
Confidence 377888887643 25789999999987653 4888886 35 5899999999999999999999 4444
Q ss_pred CCcccceEEEEEEeccCCCCcCC--cceEEEecCceEEEEEeCCCCe-EEEEEEEeC-C-CCCCCCCcchHHHHHHHhhC
Q 011888 66 EAIYSGYTCYTGIADFVPADIES--VGYRVFLGHKQYFVSSDVGAGK-MQWYAFHKE-P-AGGVDGPEGKKERLLKIFEG 140 (475)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~ 140 (475)
...+.....+..+... .+.+. ....++.++++.++.+|..++. +.+++.... + .........+.+++.+.+..
T Consensus 222 G~~~~~~~~v~dv~~~--~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~ 299 (634)
T PRK08294 222 GDSANHAWGVMDVLAV--TDFPDIRLKCAIQSASEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQR 299 (634)
T ss_pred CCcccceEEEEEEEEc--cCCCCcceEEEEecCCCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHH
Confidence 4444432222222110 11111 1122333455667777887774 344332211 1 11111123445666665544
Q ss_pred CChHHHHHHHhCCccceeecccccC--CCCcc----------ccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHH
Q 011888 141 WCDNVVDLILATDEEAILRRDIYDR--TPIFT----------WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 208 (475)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----------~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L 208 (475)
+..+. ......+..|.+|.. ..+.+ |+.|||+|+|||||+++|.+|||||+||+||.+|+|+|
T Consensus 300 ~~~p~-----~~~~~~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkL 374 (634)
T PRK08294 300 ILHPY-----TLDVKEVAWWSVYEVGQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKL 374 (634)
T ss_pred hcCCC-----CCceeEEeEEecccccceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHH
Confidence 32110 000111223333321 11222 34699999999999999999999999999999999999
Q ss_pred HHHhhccCCCCChhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 011888 209 EKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVM 252 (475)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~ 252 (475)
+.++++ ...+.+|++|+++|+++++.++.+++....+
T Consensus 375 a~vl~g-------~a~~~lL~tYe~ERrp~a~~li~~~~~~~~l 411 (634)
T PRK08294 375 AAVLSG-------RSPPELLHTYSAERQAIAQELIDFDREWSTM 411 (634)
T ss_pred HHHHcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998864 2347899999999999999999888765544
No 29
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.96 E-value=5e-28 Score=231.66 Aligned_cols=233 Identities=35% Similarity=0.452 Sum_probs=160.0
Q ss_pred hHHHHHhhccCCCeEEcCc------EEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCcccceEEE
Q 011888 2 TLQQILAKAVGDEIILNES------NVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCY 75 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~~------~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~~~ 75 (475)
.|+.+|.++++...|+++. ....++.......+.+.||.++++|++|||||++|.||++|.... +.|.++.+|
T Consensus 104 ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dlligCDGa~S~Vr~~l~~~~-p~~~~~~ay 182 (420)
T KOG2614|consen 104 LLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKE-PRYDGSQAY 182 (420)
T ss_pred HHHHHHHhhcCCCeeecccccccccccceeeecccccceecCCCcEEEeeEEEEcCchHHHHHHHhcccC-CcceeEEEE
Confidence 4677888888877888875 444444445567788999999999999999999999999995443 889999999
Q ss_pred EEEeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCC-----CCCCCcchHHHHHHHhhCCChHHHHHHH
Q 011888 76 TGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAG-----GVDGPEGKKERLLKIFEGWCDNVVDLIL 150 (475)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 150 (475)
+++. +.|...+. ....|...+..+...+.+.....++++...+-. ..+.++.......+.+..|+..+.+++.
T Consensus 183 rg~~-~~~~~~~~-~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~ 260 (420)
T KOG2614|consen 183 RGLG-FIPNGIPF-GKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIE 260 (420)
T ss_pred eeee-eccCCCCc-ccceecccCCeEEEcccCCceEEEEEeecCCcccccccCcCCHHHHhhhHHHHHHHhHHhHHHHHH
Confidence 9876 44443333 223444444455555665555555555432211 1222333444556667778888888888
Q ss_pred hCCccceeecccccCCCCc----cccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhh---
Q 011888 151 ATDEEAILRRDIYDRTPIF----TWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPID--- 223 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~----~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~--- 223 (475)
....+.+.+.++..+.+-+ +...++|+|+|||||+|.|+.|||+|+||||+.+|+++|.++.+.-+..+....
T Consensus 261 ~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d~s~~~~~~s~~~ 340 (420)
T KOG2614|consen 261 LTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAINDVSLAGEEYSREN 340 (420)
T ss_pred hcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccchhccccceeccc
Confidence 7777777666666654432 334578999999999999999999999999999999999998662111111122
Q ss_pred -----HHHHHHHHHHHhhH
Q 011888 224 -----IVSALKSYERARRL 237 (475)
Q Consensus 224 -----~~~~L~~Y~~~R~~ 237 (475)
.+.++.+|..+|..
T Consensus 341 e~~~~ie~a~~~Y~~~r~~ 359 (420)
T KOG2614|consen 341 ESHAIIELAMYSYKEERWR 359 (420)
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 45566666666633
No 30
>PRK09126 hypothetical protein; Provisional
Probab=99.96 E-value=1.5e-28 Score=248.83 Aligned_cols=260 Identities=18% Similarity=0.181 Sum_probs=171.4
Q ss_pred hHHHHHhhccC---CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccc-cCCCCCcccceEEEEE
Q 011888 2 TLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCYTG 77 (475)
Q Consensus 2 ~L~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~~~ 77 (475)
+|++.|++.+. ...++++++|++++.++++++|++++|++++||+||||||.+|.+|+.+ ++.....|.. .++..
T Consensus 111 ~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~-~~~~~ 189 (392)
T PRK09126 111 LIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSATRRQLGIGADMHDFGR-TMLVC 189 (392)
T ss_pred HHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCchhhHhcCCCccccccCC-eEEEE
Confidence 46677777653 2479999999999988888999999999999999999999999999998 3333333443 23332
Q ss_pred EeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCC---CCCCcchHHHHHHHhhCCChHHHHHHHhCCc
Q 011888 78 IADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG---VDGPEGKKERLLKIFEGWCDNVVDLILATDE 154 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (475)
...... . .......|++.+..++.+|..++.++|++..+..... ....+...+++.+.|..+.... ...
T Consensus 190 ~~~~~~-~-~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~-- 261 (392)
T PRK09126 190 RMRHEL-P-HHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEALLALDPEAFAAEVTARFKGRLGAM----RLV-- 261 (392)
T ss_pred EEeccC-C-CCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCe----EEc--
Confidence 222111 1 1222334556666777889888877666543221100 0001111222223332211100 000
Q ss_pred cceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHH
Q 011888 155 EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERA 234 (475)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~ 234 (475)
.....+++.. ...++|..+||+|+|||||.|+|++|||+|+||+||..|+++|..+++.+ .+...+++|+.|+++
T Consensus 262 ~~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~----~~~~~~~~l~~Y~~~ 336 (392)
T PRK09126 262 SSRHAYPLVA-VYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRG----QDIGAASLLERYERK 336 (392)
T ss_pred CCCcEeechH-HHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcC----CCCccHHHHHHHHHH
Confidence 1112233332 23468999999999999999999999999999999999999999886532 122347899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCcc
Q 011888 235 RRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG 282 (475)
Q Consensus 235 R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 282 (475)
|++++..++..++.+.. ++....++.+.+|+..+..+.+++
T Consensus 337 r~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~r~~~~~~~~~~~ 377 (392)
T PRK09126 337 HRLATRPLYHATNAIAA-------LYTDDRPPARLLRRAVLRAANRFP 377 (392)
T ss_pred HHHHHHHHHHHHHHHHH-------HHCCCchHHHHHHHHHHHHHhhCh
Confidence 99999988887775432 344455667788888887776555
No 31
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.96 E-value=1.4e-27 Score=240.87 Aligned_cols=238 Identities=16% Similarity=0.167 Sum_probs=150.1
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEe-eCCeEEEEEc-CCc--EEEecEEEEecCCCCcccccccCCCCCcccce--E
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKD-HGDKVSVVLE-NGQ--CYAGDLLIGADGIWSKVRKNLFGPQEAIYSGY--T 73 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~-~~~~v~v~~~-dG~--~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~--~ 73 (475)
.|++.|.+++.. ..++++++++.+.. +++.+.|++. +|+ +++||+||||||++|.||+++.....+.|.++ .
T Consensus 104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~ 183 (390)
T TIGR02360 104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPF 183 (390)
T ss_pred HHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCcccceeeeccCCc
Confidence 456777776543 36888998888765 5567788886 775 68999999999999999999843333334432 2
Q ss_pred EEEEEeccCCCCcCCcceEEEecCceEEEEEeCCC-CeEEEEEEEeCCCCCCC-CCcchHHHHHHHhhCCChHHHHHHHh
Q 011888 74 CYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGA-GKMQWYAFHKEPAGGVD-GPEGKKERLLKIFEGWCDNVVDLILA 151 (475)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~ 151 (475)
.|.++....+.. ... .++.+.+..+..++..+ +...|++..+....... ......+.+.+.| .+.+.+.+..
T Consensus 184 ~~~~l~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~ 257 (390)
T TIGR02360 184 GWLGILSETPPV--SHE-LIYSNHERGFALCSMRSATRSRYYVQVPLTDKVEDWSDDRFWAELKRRL---PSEAAERLVT 257 (390)
T ss_pred ceEEEecCCCCC--CCc-eEEEeCCCceEEEeccCCCcceEEEEcCCCCChhhCChhHHHHHHHHhc---Cchhhhhhcc
Confidence 455544322211 111 23444444455555543 22234444332111111 1112233343333 2344434332
Q ss_pred CCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHH
Q 011888 152 TDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSY 231 (475)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y 231 (475)
.+.......++. .....+|+.|||+|+|||||.|+|++|||+|+||+||.+|+++|..... .+.+.+|+.|
T Consensus 258 ~~~~~~~~~~l~-~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~--------~~~~~al~~Y 328 (390)
T TIGR02360 258 GPSIEKSIAPLR-SFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQ--------EGSSAGIEGY 328 (390)
T ss_pred CCccceeeeeHH-hhccccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhc--------cChHHHHHHH
Confidence 221111111222 1345679999999999999999999999999999999999999987532 2357899999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHh
Q 011888 232 ERARRLRVAVIHGLARSAAVMAS 254 (475)
Q Consensus 232 ~~~R~~~~~~~~~~s~~~~~~~~ 254 (475)
++.|++++..+++.|+.+..+.+
T Consensus 329 ~~~R~~r~~~~~~~s~~~~~~~~ 351 (390)
T TIGR02360 329 SARALARVWKAERFSWWMTSLLH 351 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988666543
No 32
>PRK08244 hypothetical protein; Provisional
Probab=99.96 E-value=1.3e-27 Score=248.69 Aligned_cols=235 Identities=20% Similarity=0.178 Sum_probs=153.7
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEc--CC-cEEEecEEEEecCCCCcccccc-cCCCCCcccceEEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLE--NG-QCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCY 75 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~--dG-~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~ 75 (475)
+|+++|.+.+.. ..++++++++++++++++|++++. +| +++++|+||||||++|.||+.+ +......+.. ..+
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~-~~~ 179 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATF-TAM 179 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhcCCCccCCCcce-EEE
Confidence 467788776643 479999999999999999888875 46 4799999999999999999998 3443443332 222
Q ss_pred EEEeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCCcc
Q 011888 76 TGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEE 155 (475)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 155 (475)
.+.+.. ...... ....++.++..++.+|.+++.+.|++..+.............+++.+.+..+.... +......
T Consensus 180 ~~~~~~-~~~~~~-~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~ 254 (493)
T PRK08244 180 LGDVVL-KDPPPS-SVLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRICGTD---FGLNDPV 254 (493)
T ss_pred EEEEEe-cCCCCc-ceeEEEeCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhhCCC---CCcCCee
Confidence 222111 111111 12334456667788899888766654332211111111223455555554432210 0001111
Q ss_pred ceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHh
Q 011888 156 AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERAR 235 (475)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R 235 (475)
....+.+.. ..+++|++|||+|+|||||.++|++|||||+||+||.+|+|+|+.++++ ...+.+|+.|+++|
T Consensus 255 ~~~~~~~~~-~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g-------~~~~~lL~~Ye~eR 326 (493)
T PRK08244 255 WMSRFGNAT-RQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKG-------WAPDWLLDSYHAER 326 (493)
T ss_pred EEEecccce-eeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHHcC-------CCCchhhhhhHHHH
Confidence 111222221 2456899999999999999999999999999999999999999998754 22367899999999
Q ss_pred hHHHHHHHHHHHHHH
Q 011888 236 RLRVAVIHGLARSAA 250 (475)
Q Consensus 236 ~~~~~~~~~~s~~~~ 250 (475)
++.+..++..++...
T Consensus 327 ~~~~~~~~~~~~~~~ 341 (493)
T PRK08244 327 HPVGTALLRNTEVQT 341 (493)
T ss_pred HHHHHHHHHHhHHHH
Confidence 999998887665433
No 33
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.96 E-value=9.3e-28 Score=242.69 Aligned_cols=262 Identities=15% Similarity=0.070 Sum_probs=154.0
Q ss_pred hHHHHHhhccC--CCeEEcCcEEEEEEe-eCCeEEEEE-cCCc--EEEecEEEEecCCCCcccccccCCCCCcccce--E
Q 011888 2 TLQQILAKAVG--DEIILNESNVIDFKD-HGDKVSVVL-ENGQ--CYAGDLLIGADGIWSKVRKNLFGPQEAIYSGY--T 73 (475)
Q Consensus 2 ~L~~~L~~~~~--~~~i~~~~~v~~v~~-~~~~v~v~~-~dG~--~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~--~ 73 (475)
+|.+.|++.+. ..+++++++++++++ +++++.|++ .+|+ +++||+||||||++|.||+.+.......|... .
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~ 183 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIPAGALRTFERVYPF 183 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcCcchhhceecccCc
Confidence 34556665543 247999999999987 667788888 4674 68999999999999999999843222233322 3
Q ss_pred EEEEEeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCC-CCCcchHHHHHHHhhCCChHHHHHHHhC
Q 011888 74 CYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGV-DGPEGKKERLLKIFEGWCDNVVDLILAT 152 (475)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 152 (475)
.|.++....+.. .....+...+..+.+.++.+++...+++......... .......+.+.+.+..+. ...+...
T Consensus 184 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~ 258 (392)
T PRK08243 184 GWLGILAEAPPV--SDELIYANHERGFALCSMRSPTRSRYYLQCPLDDKVEDWSDERFWDELRRRLPPED---AERLVTG 258 (392)
T ss_pred eEEEEeCCCCCC--CCceEEeeCCCceEEEecCCCCcEEEEEEecCCCCcccCChhHHHHHHHHhcCccc---ccccccC
Confidence 444443222211 1112222233344444444444444443332211111 111222344444443321 0000000
Q ss_pred CccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHH
Q 011888 153 DEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYE 232 (475)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~ 232 (475)
.......+++. .....+|+.|||+|+|||||.|+|++|||+|+||+||.+|+++|..++++ +.+++|+.|+
T Consensus 259 ~~~~~~~~~~~-~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~--------~~~~~L~~Ye 329 (392)
T PRK08243 259 PSIEKSIAPLR-SFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYRE--------GDTALLDAYS 329 (392)
T ss_pred ccccccceeee-eceeccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhcc--------CCHHHHHHHH
Confidence 10000011111 12346889999999999999999999999999999999999999987643 2368999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCc
Q 011888 233 RARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRV 281 (475)
Q Consensus 233 ~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~ 281 (475)
++|++++..++..+..+..+.... .........+|+..|..+..+
T Consensus 330 ~~r~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 374 (392)
T PRK08243 330 ATALRRVWKAERFSWWMTSMLHRF----PDDDPFDQRIQLAELDYLTSS 374 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC----CCCChHHHHHHHHHHHHHhcC
Confidence 999999999998887765553311 111222345566555544433
No 34
>PRK06184 hypothetical protein; Provisional
Probab=99.95 E-value=3.3e-27 Score=246.07 Aligned_cols=232 Identities=19% Similarity=0.270 Sum_probs=152.3
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEE---cCCcEEEecEEEEecCCCCcccccc-cCCCCCcccceEEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVL---ENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCY 75 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~---~dG~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~ 75 (475)
.|+++|.+.+.. .+++++++++++++++++|++++ .++++++||+||||||++|.||+.+ +......+.....+
T Consensus 110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~ 189 (502)
T PRK06184 110 RTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRML 189 (502)
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEE
Confidence 467788887654 47999999999999999998888 5567899999999999999999998 44444444331112
Q ss_pred EEEeccCCCCcCCcceEEEecCc-eEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCCc
Q 011888 76 TGIADFVPADIESVGYRVFLGHK-QYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDE 154 (475)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (475)
...... + ......+..|..+. ..+..+|..++.. |.+....+... ......+.+.+.+..+..... +. .
T Consensus 190 ~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~--~~-~-- 259 (502)
T PRK06184 190 VADVSL-T-GLDRDAWHQWPDGDMGMIALCPLPGTDL-FQIQAPLPPGG--EPDLSADGLTALLAERTGRTD--IR-L-- 259 (502)
T ss_pred EEEEEe-e-cCCCcceEEccCCCCcEEEEEEccCCCe-EEEEEEcCCCc--cCCCCHHHHHHHHHHhcCCCC--cc-e--
Confidence 211111 1 12223344555443 5666677765543 22222222211 112234555555544322100 00 0
Q ss_pred cceeeccccc--CCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHH
Q 011888 155 EAILRRDIYD--RTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYE 232 (475)
Q Consensus 155 ~~~~~~~~~~--~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~ 232 (475)
..+.....+. ...+++|++|||+|+|||||.|+|++|||||+||+||.+|+|+|+.++++ ..+.+|++|+
T Consensus 260 ~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g--------~~~~lL~~Ye 331 (502)
T PRK06184 260 HSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG--------APEALLDTYE 331 (502)
T ss_pred eeeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC--------CCHHHHHHHH
Confidence 0111111222 12346899999999999999999999999999999999999999988753 2368999999
Q ss_pred HHhhHHHHHHHHHHHHHHH
Q 011888 233 RARRLRVAVIHGLARSAAV 251 (475)
Q Consensus 233 ~~R~~~~~~~~~~s~~~~~ 251 (475)
++|++++..++..+.....
T Consensus 332 ~eR~p~~~~~~~~s~~~~~ 350 (502)
T PRK06184 332 EERRPVAAAVLGLSTELLD 350 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999888876443
No 35
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.95 E-value=3.6e-28 Score=245.15 Aligned_cols=257 Identities=19% Similarity=0.154 Sum_probs=165.8
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccccccc-CCCCCcccceEEEEE
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTG 77 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~-~~~~~~~~~~~~~~~ 77 (475)
+|.+.|.+.+.. .+++++++|++++.++++++|++++|++++||+||||||.+|.+|+.+. ......|.+ .++..
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~-~~~~~ 184 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLSIPTEEHDYNQ-TALIA 184 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChHHHHHcCCCCcccccCC-EEEEE
Confidence 578888887754 3789999999999888899999999999999999999999999999983 333333333 44444
Q ss_pred EeccCCCCcCCcceEEEecCceEEEEEeCCCC-eEEEEEEEeCCCCC--CC-CCcchHHHHHHHhhCCChHHHHHHHhCC
Q 011888 78 IADFVPADIESVGYRVFLGHKQYFVSSDVGAG-KMQWYAFHKEPAGG--VD-GPEGKKERLLKIFEGWCDNVVDLILATD 153 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 153 (475)
.+... .......+..+ ..+..+..+|..++ .+.+++..+..... .. ..+...+.+.+.+ .+.+.... ..
T Consensus 185 ~~~~~-~~~~~~~~~~~-~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~- 257 (382)
T TIGR01984 185 NIRHE-QPHQGCAFERF-TPHGPLALLPLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAF---GWRLGKIT-QV- 257 (382)
T ss_pred EEEec-CCCCCEEEEee-CCCCCeEECcCCCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHH---hhhccCeE-Ec-
Confidence 33221 11122223333 33345666788777 55444433211000 00 0111122222222 11111111 11
Q ss_pred ccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHH
Q 011888 154 EEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYER 233 (475)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~ 233 (475)
..+..+++.. ...++|..+||+|+|||||+|+|++|||+|+||+||.+|+++|..+.. +...+.+|+.|++
T Consensus 258 -~~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~-------~~~~~~~l~~Y~~ 328 (382)
T TIGR01984 258 -GERKTYPLKL-RIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARI-------DLGTYALLQEYLR 328 (382)
T ss_pred -CCccEeecch-hhhhheecCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhcc-------CccCHHHHHHHHH
Confidence 1122334443 345689999999999999999999999999999999999999987641 1234789999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCcc
Q 011888 234 ARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG 282 (475)
Q Consensus 234 ~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 282 (475)
+|++++..++.++..+.. +|....+....+|++.+.++.++|
T Consensus 329 ~r~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~r~~~~~~~~~~p 370 (382)
T TIGR01984 329 RRQFDQFITIGLTDGLNR-------LFSNHIPLLRALRNLGLLALENFP 370 (382)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHcCCchHHHHHHHHHHHHHhcCH
Confidence 999999988887765432 334444456778888777666554
No 36
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.95 E-value=5.6e-27 Score=246.70 Aligned_cols=253 Identities=17% Similarity=0.164 Sum_probs=156.0
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCeEEEEEc--CCc-EEEecEEEEecCCCCcccccc-cCCCCCcccceEE
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLE--NGQ-CYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTC 74 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~--dG~-~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~ 74 (475)
+|+++|.+.+.. ..+++++++++++++++++++++. +|+ ++++|+||||||.+|.||+.+ +......|.....
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~ 205 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFL 205 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEE
Confidence 467888887643 379999999999999888887765 454 799999999999999999998 3444444433222
Q ss_pred EEEEeccCCCCcCCcceEEEe----cCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHH
Q 011888 75 YTGIADFVPADIESVGYRVFL----GHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLIL 150 (475)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 150 (475)
..... ...+.....+ .|+ .++..++.++.+++...+.+........ . .....+.+.+ .+.+++.
T Consensus 206 ~~d~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~-------~l~~~~~ 273 (547)
T PRK08132 206 IADVK--MKADFPTERW-FWFDPPFHPGQSVLLHRQPDNVWRIDFQLGWDADP-E-AEKKPENVIP-------RVRALLG 273 (547)
T ss_pred EEEEE--ecCCCCCeee-EEEeccCCCCcEEEEEeCCCCeEEEEEecCCCCCc-h-hhcCHHHHHH-------HHHHHcC
Confidence 22111 1112222222 222 2344555556555533332221111100 0 0111222222 2222222
Q ss_pred hCCccceeecccc--cCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHH
Q 011888 151 ATDEEAILRRDIY--DRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSAL 228 (475)
Q Consensus 151 ~~~~~~~~~~~~~--~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L 228 (475)
...+..+.....+ ....+.+|++|||+|+|||||.|+|++|||||+||+||.+|+|+|+.++++ ...+.+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g-------~~~~~lL 346 (547)
T PRK08132 274 EDVPFELEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRG-------RAPDSLL 346 (547)
T ss_pred CCCCeeEEEEEeeeeeeeeecccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcC-------CCcHHHH
Confidence 1111112222222 234567899999999999999999999999999999999999999998764 2347899
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCC
Q 011888 229 KSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGR 280 (475)
Q Consensus 229 ~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ 280 (475)
++|+++|+++++.++..+.....+. ....+....+|+..+.....
T Consensus 347 ~~Ye~eR~p~~~~~~~~s~~~~~~~-------~~~~~~~~~~r~~~~~~~~~ 391 (547)
T PRK08132 347 DSYASEREFAADENIRNSTRSTDFI-------TPKSPVSRLFRDAVLRLARD 391 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-------CCCCHHHHHHHHHHHhhhcc
Confidence 9999999999998887776544332 22233344566665554433
No 37
>PRK07190 hypothetical protein; Provisional
Probab=99.95 E-value=1.6e-26 Score=238.42 Aligned_cols=228 Identities=16% Similarity=0.156 Sum_probs=147.5
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccc-cCCCCCcccceEEEE-E
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCYT-G 77 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~~-~ 77 (475)
.++++|.+++.. .+++++++|++++++++++++++.+|++++|++||||||.+|.||+.+ ++.....+....... .
T Consensus 110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~ 189 (487)
T PRK07190 110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDG 189 (487)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEE
Confidence 356777776543 479999999999999999999888888999999999999999999998 444433332211111 1
Q ss_pred EeccCCCCcCC-cceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhC-CChHHHHHHHhCCcc
Q 011888 78 IADFVPADIES-VGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEG-WCDNVVDLILATDEE 155 (475)
Q Consensus 78 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~ 155 (475)
... .+.+. .....+..+...++.+|..++...++... .. .....+++.+.+.. ..+.. +......
T Consensus 190 ~~~---~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~--~~-----~~~t~~~~~~~l~~~~~~~~---~~~~~~~ 256 (487)
T PRK07190 190 VID---TDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRM--DT-----KDFTLEQAIAKINHAMQPHR---LGFKEIV 256 (487)
T ss_pred EEc---cCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEc--CC-----CCCCHHHHHHHHHHhcCCCC---CceEEEE
Confidence 111 11111 11122333344455567766554443321 11 11122333332222 11110 0000111
Q ss_pred ceeecccccCCCCcccc-CCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHH
Q 011888 156 AILRRDIYDRTPIFTWG-RGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERA 234 (475)
Q Consensus 156 ~~~~~~~~~~~~~~~~~-~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~ 234 (475)
.+..+++.. ..+.+|. +|||+|+|||||.++|++|||||+||+||.+|+|+|+.++++. ..+.+|++|+++
T Consensus 257 w~s~~~~~~-r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~-------a~~~lLdtY~~e 328 (487)
T PRK07190 257 WFSQFSVKE-SVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHG-------ASPELLQSYEAE 328 (487)
T ss_pred EEEEeeeCc-EehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCC-------CcHHHHHHHHHH
Confidence 122233332 3456886 7999999999999999999999999999999999999887652 237999999999
Q ss_pred hhHHHHHHHHHHHHHH
Q 011888 235 RRLRVAVIHGLARSAA 250 (475)
Q Consensus 235 R~~~~~~~~~~s~~~~ 250 (475)
|++.+..++..++.+.
T Consensus 329 R~p~a~~vl~~t~~~~ 344 (487)
T PRK07190 329 RKPVAQGVIETSGELV 344 (487)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888777544
No 38
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.95 E-value=1.7e-27 Score=240.76 Aligned_cols=270 Identities=17% Similarity=0.139 Sum_probs=172.0
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccccccc-CCCCCcccceEEEEE
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTG 77 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~-~~~~~~~~~~~~~~~ 77 (475)
+|.++|.+++.. ..++ ++++++++.++++++|++++|++++||+||+|||++|.+|+.+. ......|.+. ++..
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~-~~~~ 189 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSWVRSQAGIKAERRPYRQT-GVVA 189 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCchHHHhcCCCccccccCCE-EEEE
Confidence 467788777653 3466 99999999888899999999989999999999999999999983 3233334332 2222
Q ss_pred EeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCCccce
Q 011888 78 IADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAI 157 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 157 (475)
.+.. +..... ....|+.++.+++.+|.+++...+++........ .......+.+.+.+..+.+.....+..... .
T Consensus 190 ~~~~-~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 264 (388)
T PRK07608 190 NFKA-ERPHRG-TAYQWFRDDGILALLPLPDGHVSMVWSARTAHAD-ELLALSPEALAARVERASGGRLGRLECVTP--A 264 (388)
T ss_pred EEEe-cCCCCC-EEEEEecCCCCEEEeECCCCCeEEEEECCHHHHH-HHHCCCHHHHHHHHHHHHHHhcCCceecCC--c
Confidence 2211 111111 2234556667777789888876554432211000 000012233444443322111000111000 1
Q ss_pred eecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhH
Q 011888 158 LRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRL 237 (475)
Q Consensus 158 ~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~ 237 (475)
..+++.. ...+.|+++||+|+|||||+|+|++|||+|+||+||.+|+++|..+...+ +....++|+.|+++|++
T Consensus 265 ~~~~~~~-~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~-----~~~~~~~l~~Ye~~R~~ 338 (388)
T PRK07608 265 AGFPLRL-QRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFR-----DLGDLRLLRRYERARRE 338 (388)
T ss_pred ceeecch-hhhhhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccC-----CCccHHHHHHHHHHHHH
Confidence 1122222 23568999999999999999999999999999999999999998763211 11235799999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCccc--eeEEecch
Q 011888 238 RVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAM 291 (475)
Q Consensus 238 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~ 291 (475)
++..++..++... .++..+..+...+|+..+..+..+|. ++++++++
T Consensus 339 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 387 (388)
T PRK07608 339 DILALQVATDGLQ-------RLFALPGPLARWLRNAGMALVGALPLVKRWLVRHAL 387 (388)
T ss_pred HHHHHHHHHHHHH-------HHHcCCchHHHHHHHHHHHHHhhChHHHHHHHHHhc
Confidence 9998887776533 34555666778889988887776663 55555443
No 39
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.95 E-value=3.8e-27 Score=237.94 Aligned_cols=260 Identities=21% Similarity=0.226 Sum_probs=167.0
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccccccc-CCCCCcccceEEEEE
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTG 77 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~-~~~~~~~~~~~~~~~ 77 (475)
+|.+.|++.+.+ ..++++++|++++.+++++++++++|+++++|+||+|||.+|.+|+.+. ......|.. .++..
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~-~~~~~ 185 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSKVRQLAGIPTTGWDYGQ-SAVVA 185 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCHHHHHcCCCccccccCC-eEEEE
Confidence 467778777643 4799999999999888899999999999999999999999999999983 333444443 23332
Q ss_pred EeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCC---CCCCCcchHHHHHHHhhCCChHHHHHHHhCCc
Q 011888 78 IADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAG---GVDGPEGKKERLLKIFEGWCDNVVDLILATDE 154 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (475)
.... +.......+. ++.++..++.+|..++...+.+....... ....++...+.+.+.+..+.+. +.. .
T Consensus 186 ~~~~-~~~~~~~~~~-~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~ 257 (385)
T TIGR01988 186 NVKH-ERPHQGTAWE-RFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFGSRLGA----ITL--V 257 (385)
T ss_pred EEEe-cCCCCCEEEE-EecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCc----eEe--c
Confidence 2221 1111222222 33344556677888877666554322100 0001112222333333222111 000 0
Q ss_pred cceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHH
Q 011888 155 EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERA 234 (475)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~ 234 (475)
.....+++.. ...++|..+||+|+|||||.|+|++|||+|+||+||.+|+++|..++..+ .+...+.+|+.|+++
T Consensus 258 ~~~~~~~~~~-~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~----~~~~~~~~l~~y~~~ 332 (385)
T TIGR01988 258 GERHAFPLSL-THAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRG----EDIGSPRVLQRYERR 332 (385)
T ss_pred cCcceeechh-hhhhheecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcC----CCCCcHHHHHHHHHH
Confidence 1122233332 24568999999999999999999999999999999999999999876532 112347899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCcc
Q 011888 235 RRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG 282 (475)
Q Consensus 235 R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 282 (475)
|++++..++.+++.... ++....+....+|++.+..+..++
T Consensus 333 r~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~r~~~~~~~~~~~ 373 (385)
T TIGR01988 333 RRFDNAAMLGATDGLNR-------LFSNDFPPLRLLRNLGLRLLNLLP 373 (385)
T ss_pred HHHHHHHHHHHHHHHHH-------HHcCCCcHHHHHHHHHHHHHhhCH
Confidence 99999999888776443 333444556667776666554433
No 40
>PRK06126 hypothetical protein; Provisional
Probab=99.95 E-value=2.1e-26 Score=242.47 Aligned_cols=232 Identities=22% Similarity=0.219 Sum_probs=145.4
Q ss_pred hHHHHHhhccC---CCeEEcCcEEEEEEeeCCeEEEEEcC---Cc--EEEecEEEEecCCCCcccccc-cCCCCCcccce
Q 011888 2 TLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLEN---GQ--CYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGY 72 (475)
Q Consensus 2 ~L~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~v~~~d---G~--~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~ 72 (475)
.|+++|++.+. ...++++++|+++++++++|++++.+ |+ ++++|+||||||++|.||+.+ +......+.+.
T Consensus 127 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~ 206 (545)
T PRK06126 127 YLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQR 206 (545)
T ss_pred HHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcce
Confidence 37788888764 34799999999999998888887754 64 689999999999999999998 33333333332
Q ss_pred EEEEEE-eccCCCC--cCCcceEEEecCceEEEEEeCCCCeEEEEEE-EeCCCCCCCCCcchHHHHHHHhhCCC-hHHHH
Q 011888 73 TCYTGI-ADFVPAD--IESVGYRVFLGHKQYFVSSDVGAGKMQWYAF-HKEPAGGVDGPEGKKERLLKIFEGWC-DNVVD 147 (475)
Q Consensus 73 ~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~ 147 (475)
.....+ .+..... .......++.+++...++.+..++. .|.+. ........ ....+.+.+.+.... ..+.
T Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~- 281 (545)
T PRK06126 207 DLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAIDGRD-EWLFHQLRGGEDEF---TIDDVDARAFVRRGVGEDID- 281 (545)
T ss_pred EEEEEEEcCchHHHhcCCCceEEEEECCCccEEEEEECCCC-eEEEEEecCCCCCC---CCCHHHHHHHHHHhcCCCCC-
Confidence 211111 1111111 1111223445555554444554433 34443 22111111 111222333222111 1100
Q ss_pred HHHhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHH
Q 011888 148 LILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSA 227 (475)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~ 227 (475)
........|. .....+++|++|||+|+|||||.|+|++|||+|+||+||.+|+|+|+.++++ .+.+.+
T Consensus 282 ----~~i~~~~~w~-~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~-------~~~~~l 349 (545)
T PRK06126 282 ----YEVLSVVPWT-GRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNG-------WAGPAL 349 (545)
T ss_pred ----eEEEeecccc-hhheehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcC-------CCcHHH
Confidence 0000111222 2234567899999999999999999999999999999999999999987653 234789
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Q 011888 228 LKSYERARRLRVAVIHGLARSAA 250 (475)
Q Consensus 228 L~~Y~~~R~~~~~~~~~~s~~~~ 250 (475)
|++|+++|++++..++..+....
T Consensus 350 L~~Y~~eR~p~~~~~~~~s~~~~ 372 (545)
T PRK06126 350 LDSYEAERRPIAARNTDYARRNA 372 (545)
T ss_pred HhhhHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999998887543
No 41
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.95 E-value=4.4e-27 Score=238.33 Aligned_cols=269 Identities=16% Similarity=0.184 Sum_probs=170.2
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccccccc-CCCCCcccceEEEEE
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTG 77 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~-~~~~~~~~~~~~~~~ 77 (475)
+|.+.|.+.+.. .+++++++|++++.++++++|++++|+++++|+||+|||.+|.||+.+. ......+.+ .++..
T Consensus 113 ~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~-~~~~~ 191 (395)
T PRK05732 113 DVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSALREALGIDWQQHPYEQ-VAVIA 191 (395)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChhhHHhhCCCccceecCC-EEEEE
Confidence 466777776532 4789999999999888899999999989999999999999999999883 322233332 34443
Q ss_pred EeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCC---CCCCCcchHHHHHHHhhCCChHHHHHHHhCCc
Q 011888 78 IADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAG---GVDGPEGKKERLLKIFEGWCDNVVDLILATDE 154 (475)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (475)
.+... .......+..+. .+..+..+|.+++...+++..+.... .........+.+.+.+. | ....+. ...
T Consensus 192 ~~~~~-~~~~~~~~~~~~-~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~-~~~- 264 (395)
T PRK05732 192 NVTTS-EAHQGRAFERFT-EHGPLALLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFG-W--RLGRIT-HAG- 264 (395)
T ss_pred EEEec-CCCCCEEEEeec-CCCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHH-h--hhccee-ecC-
Confidence 33211 111122233333 33345667888887665544321100 00001112222322221 1 110110 000
Q ss_pred cceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHH
Q 011888 155 EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERA 234 (475)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~ 234 (475)
....+++.. ...++|..||++|+|||||.|+|++|||+|+||+||.+|+++|..+++.+. +....++|+.|+++
T Consensus 265 -~~~~~~l~~-~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~----~~~~~~~l~~Y~~~ 338 (395)
T PRK05732 265 -KRSAYPLAL-VTAAQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGE----DIGDYAVLQRYQQR 338 (395)
T ss_pred -Ccceecccc-cchhhhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHH
Confidence 112223322 244689999999999999999999999999999999999999988765421 12235899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCccc--eeEEecch
Q 011888 235 RRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAM 291 (475)
Q Consensus 235 R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~ 291 (475)
|++++..++..++.+. .+|..+..+...+|+..+.++..++. ++++++++
T Consensus 339 R~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 390 (395)
T PRK05732 339 RQQDREATIGFTDGLV-------RLFANRWAPLVVGRNLGLMAMDLLPPARDWLARRTL 390 (395)
T ss_pred HHHHHHHHHHHHHHHH-------HHHcCCChHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999998887776543 34455556778889988887776553 44444443
No 42
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.95 E-value=5.5e-27 Score=233.60 Aligned_cols=233 Identities=27% Similarity=0.255 Sum_probs=141.7
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCC-----cEEEecEEEEecCCCCcccccccCC-CCCcccceE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENG-----QCYAGDLLIGADGIWSKVRKNLFGP-QEAIYSGYT 73 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG-----~~~~adlvVGADG~~S~vR~~l~~~-~~~~~~~~~ 73 (475)
+|+++|.+.+.. ..+++++++++++++.+++++.+.++ ++++||+||||||++|.||+.+... ....+....
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~ 191 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRW 191 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEE
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchhhhccccccCccccccc
Confidence 578888887643 47999999999999999887776543 2799999999999999999998322 111111111
Q ss_pred EEEEEeccCCCC-cCCcceEEEecCceEEEEEeCCC-CeEEEEEEEeCCCCCC-CCCcchHHHHHHHhhCCChHHHHHHH
Q 011888 74 CYTGIADFVPAD-IESVGYRVFLGHKQYFVSSDVGA-GKMQWYAFHKEPAGGV-DGPEGKKERLLKIFEGWCDNVVDLIL 150 (475)
Q Consensus 74 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~ 150 (475)
.+..+....+.. .....+.+...+...+..+|..+ +...+++......... .......+.+.+.+... ......
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 268 (356)
T PF01494_consen 192 GWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEI---FGPDLL 268 (356)
T ss_dssp EEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHH---HHTCHH
T ss_pred cccccccccccccccccccccccccccceeEeeccCCccceEEEeeecccccccccccccccccccccccc---cccccc
Confidence 222221111111 11112233334455556667766 4344444443332211 11222333443333221 111111
Q ss_pred hCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHH
Q 011888 151 ATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKS 230 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~ 230 (475)
.........+++.. ....+|++|||+|||||||+|+|++|||+|+||+||..|+++|..+.++ ...+++|+.
T Consensus 269 ~~~~~~~~~~~~~~-~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g-------~~~~~~l~~ 340 (356)
T PF01494_consen 269 ETEIDEISAWPIPQ-RVADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKG-------EASEEALKA 340 (356)
T ss_dssp HHEEEEEEEEEEEE-EEESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTT-------SSHHHHHHH
T ss_pred cccccccccccccc-ccccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcC-------CcHHHHHHH
Confidence 11111233333332 2456899999999999999999999999999999999999999998763 245789999
Q ss_pred HHHHhhHHHHHHHHH
Q 011888 231 YERARRLRVAVIHGL 245 (475)
Q Consensus 231 Y~~~R~~~~~~~~~~ 245 (475)
|+++|+++++.++..
T Consensus 341 Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 341 YEQERRPRARKAVQF 355 (356)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999977654
No 43
>PTZ00367 squalene epoxidase; Provisional
Probab=99.93 E-value=2.6e-24 Score=223.73 Aligned_cols=242 Identities=19% Similarity=0.172 Sum_probs=147.6
Q ss_pred HHHHHhhcc----C-CCeEEcCcEEEEEEeeCC-------eEEEEEcC-----------------------CcEEEecEE
Q 011888 3 LQQILAKAV----G-DEIILNESNVIDFKDHGD-------KVSVVLEN-----------------------GQCYAGDLL 47 (475)
Q Consensus 3 L~~~L~~~~----~-~~~i~~~~~v~~v~~~~~-------~v~v~~~d-----------------------G~~~~adlv 47 (475)
|.+.|.+.+ . +.+++ ..+++++..+++ +|++++.+ |++++||+|
T Consensus 133 ~~~~Lr~~a~~~~~~~V~v~-~~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLv 211 (567)
T PTZ00367 133 FVQNLRSHVFHNCQDNVTML-EGTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLV 211 (567)
T ss_pred HHHHHHHHHHhhcCCCcEEE-EeEEEEeccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEEEeCEE
Confidence 444555544 2 23554 457888755433 46666554 568999999
Q ss_pred EEecCCCCcccccccCCCCCcccceEEEEEEe-ccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCC
Q 011888 48 IGADGIWSKVRKNLFGPQEAIYSGYTCYTGIA-DFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDG 126 (475)
Q Consensus 48 VGADG~~S~vR~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (475)
|||||++|++|+.+... .+.+.....+.+.. .....+. ....+.|++++..++.+|++++...+++....+... .
T Consensus 212 VgADG~~S~vR~~l~~~-~~~~~~~s~~~g~~~~~~~lp~-~~~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~~~p--~ 287 (567)
T PTZ00367 212 VMCDGGMSKFKSRYQHY-TPASENHSHFVGLVLKNVRLPK-EQHGTVFLGKTGPILSYRLDDNELRVLVDYNKPTLP--S 287 (567)
T ss_pred EECCCcchHHHHHccCC-CCCcCcceEEEEEEEecccCCC-CCeeEEEEcCCceEEEEEcCCCeEEEEEEecCCcCC--C
Confidence 99999999999998422 12222223333321 1111111 222356778888899999998887665554332111 0
Q ss_pred CcchHHHHHHHhhC-CChHHHHHH-HhCCc-cceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHH
Q 011888 127 PEGKKERLLKIFEG-WCDNVVDLI-LATDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQ 203 (475)
Q Consensus 127 ~~~~~~~l~~~~~~-~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~ 203 (475)
.....+.+.+.+.. +.+.+.+.+ ..... ..+..++.... +..+|..+|++|+|||||+|||++|||||+||+||..
T Consensus 288 ~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~-p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~ 366 (567)
T PTZ00367 288 LEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARY-PPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIR 366 (567)
T ss_pred hHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhC-CCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHH
Confidence 11223333333332 333444332 22111 12333444433 3446788999999999999999999999999999999
Q ss_pred HHHHHHHHhhc-cCCCCChhhHHHHHH----HHHHHhhHHHHHHHHHHHHHH
Q 011888 204 LAVELEKACKK-SNESKTPIDIVSALK----SYERARRLRVAVIHGLARSAA 250 (475)
Q Consensus 204 La~~L~~~~~~-~~~~~~~~~~~~~L~----~Y~~~R~~~~~~~~~~s~~~~ 250 (475)
|+++|...... +.+.++..+...+|+ .|+++|++++..++.++..+.
T Consensus 367 La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~ 418 (567)
T PTZ00367 367 LAKSLTGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTHASTINILSWALY 418 (567)
T ss_pred HHHHHHhhhcccCCCchhHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999764321 001111234567777 999999999999988887644
No 44
>PLN02985 squalene monooxygenase
Probab=99.93 E-value=2.1e-24 Score=223.38 Aligned_cols=236 Identities=14% Similarity=0.127 Sum_probs=149.1
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCe---EEEEEcCCc--EEEecEEEEecCCCCcccccccCCCCCcccceE
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDK---VSVVLENGQ--CYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYT 73 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~---v~v~~~dG~--~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~ 73 (475)
+|.+.|++++.. .+++.+ +++++..+++. |++...+|+ +++||+||||||++|.+|+.+.......+....
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~ 226 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQV 226 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhccCCCcceeEeE
Confidence 577888877643 356654 57777655543 444445675 467999999999999999999543333333333
Q ss_pred EEEEEeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhC-----CChHHHHH
Q 011888 74 CYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEG-----WCDNVVDL 148 (475)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~ 148 (475)
.+.. .. . ........+++++.+..++.+|++++...+++..+.+... .....++.+.+.. +.+.+.+.
T Consensus 227 ~~~~-~~-~-~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~p~~p~~l~~~ 299 (514)
T PLN02985 227 GYIS-KN-C-RLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIP----SIANGEMSTFVKNTIAPQVPPKLRKI 299 (514)
T ss_pred EEEE-cc-c-cCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCCC----CcChhhHHHHHHhccccccCHHHHHH
Confidence 3321 11 1 1112223356677777888889988877666555432111 1112233333332 23334443
Q ss_pred HHh-CCc-cceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHH
Q 011888 149 ILA-TDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVS 226 (475)
Q Consensus 149 ~~~-~~~-~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~ 226 (475)
+.. .++ ..+...+.... +...|..+|++|+|||||+|+|++|||||+||+||..|+++|...-. ..+..+..+
T Consensus 300 f~~~~~~~~~~~~~p~~~l-~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~----~~~~~~~~~ 374 (514)
T PLN02985 300 FLKGIDEGAHIKVVPTKRM-SATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSN----LGNANKVSE 374 (514)
T ss_pred HHhhcccccceeecCcccc-cccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhccc----ccchhHHHH
Confidence 321 111 11322333322 33466779999999999999999999999999999999999976411 112346789
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Q 011888 227 ALKSYERARRLRVAVIHGLARSAA 250 (475)
Q Consensus 227 ~L~~Y~~~R~~~~~~~~~~s~~~~ 250 (475)
+|+.|+++|++++..++.+|+.+.
T Consensus 375 aL~~y~~~Rk~r~~~i~~la~al~ 398 (514)
T PLN02985 375 VIKSFYDIRKPMSATVNTLGNAFS 398 (514)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHH
Confidence 999999999999999999887654
No 45
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.87 E-value=7e-22 Score=214.34 Aligned_cols=224 Identities=22% Similarity=0.282 Sum_probs=142.2
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccC---C-CCCcccceEEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFG---P-QEAIYSGYTCY 75 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~---~-~~~~~~~~~~~ 75 (475)
+|.++|.+++.+ .++++++++++++.. ..++|+||||||++|.||+.+.. . ....+.. +.|
T Consensus 98 ~L~~~L~e~a~~~GV~i~~g~~v~~i~~~------------~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~-~~w 164 (765)
T PRK08255 98 RLLNILQARCEELGVKLVFETEVPDDQAL------------AADADLVIASDGLNSRIRTRYADTFQPDIDTRRCR-FVW 164 (765)
T ss_pred HHHHHHHHHHHHcCCEEEeCCccCchhhh------------hcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCc-eEE
Confidence 578888887654 378899988776421 24799999999999999997631 1 1222222 334
Q ss_pred EEEeccCCCCcCCcceEEE-ecCce-EEEEEeCCCCeEEEEEEEeCCC---CCC--CCCcchHHHHHHHhhCCChHHHHH
Q 011888 76 TGIADFVPADIESVGYRVF-LGHKQ-YFVSSDVGAGKMQWYAFHKEPA---GGV--DGPEGKKERLLKIFEGWCDNVVDL 148 (475)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~~~~~~~~ 148 (475)
.+.... .....+... ...+. .+..++..++...|++...... ... ...+...+.+.+.|..|.+.. .+
T Consensus 165 ~g~~~~----~~~~~~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~-~l 239 (765)
T PRK08255 165 LGTHKV----FDAFTFAFEETEHGWFQAHAYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLDGH-PL 239 (765)
T ss_pred ecCCCc----ccceeEEEEecCCceEEEEEeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcCCC-cc
Confidence 432211 111111100 11221 1234566666555554432110 011 122345667788888886542 23
Q ss_pred HHhCCccceeecccccCCCCccccCCc----EEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhH
Q 011888 149 ILATDEEAILRRDIYDRTPIFTWGRGR----VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDI 224 (475)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~gr----vvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~ 224 (475)
+..........|..+.....++|+.|| |+|+|||||+|+|+.|||+|+||+||..|+++|... ..++
T Consensus 240 i~~~~~~~~~~w~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~---------~~~~ 310 (765)
T PRK08255 240 MSNASHLRGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEH---------PGDL 310 (765)
T ss_pred cccccccccceeeecceeccCCCccCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHc---------cccH
Confidence 222211111224455555667999999 999999999999999999999999999999999864 1256
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 011888 225 VSALKSYERARRLRVAVIHGLARSAAVM 252 (475)
Q Consensus 225 ~~~L~~Y~~~R~~~~~~~~~~s~~~~~~ 252 (475)
+.+|+.|++.|++++..++..++....+
T Consensus 311 ~~al~~ye~~R~~r~~~~~~~s~~~~~~ 338 (765)
T PRK08255 311 PAALAAYEEERRVEVLRIQNAARNSTEW 338 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCce
Confidence 8999999999999999999988865433
No 46
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.84 E-value=4.3e-21 Score=182.70 Aligned_cols=263 Identities=21% Similarity=0.253 Sum_probs=168.4
Q ss_pred CeEEcCcEEEEEEee------C--CeEEEEEcCCcEEEecEEEEecCCCCcccccc-cCCCCCcccceEEEEEEeccCC-
Q 011888 14 EIILNESNVIDFKDH------G--DKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCYTGIADFVP- 83 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~------~--~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~~~~~~~~~- 83 (475)
.++...+++..+... + .-..+++.||..+.+||||||||.||.||+.. +....+.|.+ .+..+.....+
T Consensus 168 v~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~-havVAtl~l~~~ 246 (481)
T KOG3855|consen 168 VTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQ-HAVVATLKLEEE 246 (481)
T ss_pred eeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccc-eeeeEEEEeccc
Confidence 367777887776541 2 23678899999999999999999999999999 6777788876 34444433322
Q ss_pred CCcCCcceEEEecCceEEEEEeCCCC--eEEEEEEEeCCCCCCCCC-cchHHHHHHHhhCCChHH---------------
Q 011888 84 ADIESVGYRVFLGHKQYFVSSDVGAG--KMQWYAFHKEPAGGVDGP-EGKKERLLKIFEGWCDNV--------------- 145 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~--------------- 145 (475)
......+|+.|+..|+..+. |.++. .+.|.........-...+ +...+.+-..|..-.+++
T Consensus 247 ~~~~~~AwQRFlP~GpiAll-pl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~ 325 (481)
T KOG3855|consen 247 AILNGVAWQRFLPTGPIALL-PLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQ 325 (481)
T ss_pred ccccchhHHhcCCCCceeec-ccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhh
Confidence 33455788899988887665 45444 345543211100000111 111112222221100000
Q ss_pred --HHHHHhCCcc-------ce--------eecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHH
Q 011888 146 --VDLILATDEE-------AI--------LRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 208 (475)
Q Consensus 146 --~~~~~~~~~~-------~~--------~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L 208 (475)
..++....+. .+ ..+|+. ...+..|...|+.|+|||||.+||.+|||.|+|+.|+..|...|
T Consensus 326 ~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLg-f~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL 404 (481)
T KOG3855|consen 326 LSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLG-FGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSL 404 (481)
T ss_pred ccHHHHhccCcccccccCCeEEEecccceeecccc-cccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHH
Confidence 0011111100 00 001111 12335788999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCChhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCccc--eeE
Q 011888 209 EKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFF 286 (475)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~ 286 (475)
.++...+ .+.+...-|+.|+++|.+....+ +...+. ++.++....+++..+|.++|.+-+...+ .++
T Consensus 405 ~~ai~~g----~DlgS~~~L~~y~~~~~~~N~~l------l~~vdk-l~klY~t~~p~vV~~rt~GL~~~n~l~PvKN~i 473 (481)
T KOG3855|consen 405 SEAIVSG----LDLGSVEHLEPYERERLQHNYVL------LGAVDK-LHKLYATSAPPVVLLRTFGLQLTNALAPVKNFI 473 (481)
T ss_pred HHHHHhc----ccccchhhhhHHHHHHhhhcchH------HHHHHH-HHHHHhccCCcEEEEeccchhhccccccHHHHH
Confidence 9998875 34555788999999998887643 333333 5667888899999999999998877664 555
Q ss_pred Eecc
Q 011888 287 IDLA 290 (475)
Q Consensus 287 ~~~~ 290 (475)
|.++
T Consensus 474 m~~~ 477 (481)
T KOG3855|consen 474 MVTA 477 (481)
T ss_pred HHHH
Confidence 5443
No 47
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.82 E-value=5.1e-19 Score=171.76 Aligned_cols=197 Identities=20% Similarity=0.210 Sum_probs=123.3
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCC-cEEEecEEEEecCCCCcccccccCCCCCcccceEEEEEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENG-QCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGI 78 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG-~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~~~~~~ 78 (475)
+|.+.|.+.+.+ .+++++++++++..+++++++.+.++ .++++|+||+|||.+|.+|+.+. .....+.....+...
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~-~~~~~~~~~~~~~~~ 170 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLG-LRKEPRELGVAARAE 170 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHHHHhcC-CCCCCcceeeEEEEE
Confidence 467788887654 37889999999998888888877654 58999999999999999999872 111111111233323
Q ss_pred eccCCCCcCCcceEEEec----CceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCCc
Q 011888 79 ADFVPADIESVGYRVFLG----HKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDE 154 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (475)
..............++.+ ++.+.+.+|..++...+.+....+. .+....+.+.+..... +. +.....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~-~~----l~~~~~ 241 (295)
T TIGR02032 171 VEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE----EGEDLKKYLKDFLARR-PE----LKDAET 241 (295)
T ss_pred EecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC----CCCCHHHHHHHHHHhC-cc----cccCcE
Confidence 221111222233344443 3467778898888765544332211 1122233333333221 21 111111
Q ss_pred cceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHH
Q 011888 155 EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 208 (475)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L 208 (475)
.....+.+.......+|..+|++|+|||||.++|++|||+|+||+||..+|++|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 242 VEVIGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred EeeeceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 122233344444556889999999999999999999999999999999999864
No 48
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.81 E-value=4.3e-18 Score=171.92 Aligned_cols=219 Identities=18% Similarity=0.183 Sum_probs=132.6
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcC------C--cEEEecEEEEecCCCCcccccccCCCCCcccc
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLEN------G--QCYAGDLLIGADGIWSKVRKNLFGPQEAIYSG 71 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~d------G--~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~ 71 (475)
.|++.|.+++.. .+++.+ +|+++..+++++.|++.+ | .+++|++||||||.+|.||+.+.......+
T Consensus 93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg~~~~~~~-- 169 (388)
T TIGR02023 93 VFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPKNLPR-- 169 (388)
T ss_pred HHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcCCCCCCcE--
Confidence 466777776543 356554 699998888888888764 2 379999999999999999998832212111
Q ss_pred eEEEEEEeccCC--CCcCCcceEEEec----CceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHH
Q 011888 72 YTCYTGIADFVP--ADIESVGYRVFLG----HKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNV 145 (475)
Q Consensus 72 ~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 145 (475)
..++........ ........++|++ ++.+.+.+|.++ ...+... ... .....+.+.+.+....+
T Consensus 170 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~-~~~vg~~-~~~------~~~~~~~~~~~l~~~~~-- 239 (388)
T TIGR02023 170 VIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGD-HIAVGTG-TGT------HGFDAKQLQANLRRRAG-- 239 (388)
T ss_pred EEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCC-eeEEeEE-ECC------CCCCHHHHHHHHHHhhC--
Confidence 122222221111 1122223344443 456777888764 3332221 111 01122334333332211
Q ss_pred HHHHHhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHH
Q 011888 146 VDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIV 225 (475)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~ 225 (475)
+............+.. .+.++|..++++|+|||||.++|++|||+++||+++..+++.|.++++.+ ..
T Consensus 240 ---~~~~~~~~~~~~~ip~-~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~--------~~ 307 (388)
T TIGR02023 240 ---LDGGQTIRREAAPIPM-KPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNG--------DA 307 (388)
T ss_pred ---CCCceEeeeeeEeccc-cccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcC--------CH
Confidence 0011111111112222 34567889999999999999999999999999999999999999987642 14
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 011888 226 SALKSYERARRLRVAVIHGL 245 (475)
Q Consensus 226 ~~L~~Y~~~R~~~~~~~~~~ 245 (475)
..|+.|+++.+.........
T Consensus 308 ~~L~~Y~~~~~~~~~~~~~~ 327 (388)
T TIGR02023 308 TDLRHYERKFMKLYGTTFRV 327 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67999999988776544433
No 49
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.79 E-value=1.6e-17 Score=169.58 Aligned_cols=225 Identities=16% Similarity=0.122 Sum_probs=130.4
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEee---CCeEEEEEcC-------C--cEEEecEEEEecCCCCcccccccCCCCC
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDH---GDKVSVVLEN-------G--QCYAGDLLIGADGIWSKVRKNLFGPQEA 67 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~---~~~v~v~~~d-------G--~~~~adlvVGADG~~S~vR~~l~~~~~~ 67 (475)
.|++.|.+++.. .+++.+ ++++++.. ++.+.|++.+ | .+++||+||||||++|.||+.+... ..
T Consensus 133 ~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~~-~~ 210 (450)
T PLN00093 133 VLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDIDAG-DY 210 (450)
T ss_pred HHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhCCC-Cc
Confidence 467788776543 366655 57777642 2456666643 3 4799999999999999999998322 11
Q ss_pred cccceEEEEEEeccCC--CCcCCcceEEEec----CceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCC
Q 011888 68 IYSGYTCYTGIADFVP--ADIESVGYRVFLG----HKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGW 141 (475)
Q Consensus 68 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (475)
.+ ..++........ .+......+++++ ++.+.+++|.++. ..+-...... . .....+.+.+..
T Consensus 211 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~~-~~VG~g~~~~--~-----~~~~~~~~~l~~- 279 (450)
T PLN00093 211 DY--AIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTGTVVN--K-----PAIKKYQRATRN- 279 (450)
T ss_pred ce--eEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCCc-EEEEEEEccC--C-----CChHHHHHHHHH-
Confidence 11 122222221111 1122233455655 4567788898743 3322211110 0 111222222221
Q ss_pred ChHHHHHHHhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCCh
Q 011888 142 CDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTP 221 (475)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~ 221 (475)
.....+.......+...++.. .+..+|..+|++|+|||||.++|++|+|+++||+++..+|+.+.++++.+ ..
T Consensus 280 --~~~~~l~~~~~~~~~~~~ip~-~~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g----~~ 352 (450)
T PLN00093 280 --RAKDKIAGGKIIRVEAHPIPE-HPRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENG----TR 352 (450)
T ss_pred --HhhhhcCCCeEEEEEEEEccc-ccccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcC----CC
Confidence 011111111111222233332 34567889999999999999999999999999999999999999887542 11
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHH
Q 011888 222 IDIVSALKSYERARRLRVAVIHGLA 246 (475)
Q Consensus 222 ~~~~~~L~~Y~~~R~~~~~~~~~~s 246 (475)
......|+.|++..+.........+
T Consensus 353 ~~s~~~L~~Y~~~~~~~~g~~~~~~ 377 (450)
T PLN00093 353 MVDEADLREYLRKWDKKYWPTYKVL 377 (450)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1235678999997776654444333
No 50
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.78 E-value=2.3e-17 Score=152.92 Aligned_cols=218 Identities=19% Similarity=0.121 Sum_probs=137.4
Q ss_pred ecEEEEecCCCCcccccccCCCCCcccceEEEEEEeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCC
Q 011888 44 GDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG 123 (475)
Q Consensus 44 adlvVGADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (475)
|.++|.|||..|+.|+.+. ...+... ..+.|+.-.-..-..+..-++++++...+++|+++.+.+...+-++.+...
T Consensus 2 A~LtivaDG~~S~fRk~l~-~~~~~v~--S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P 78 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELS-DNKPQVR--SYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLP 78 (276)
T ss_pred CCEEEEecCCchHHHHhhc-CCCCcee--eeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccC
Confidence 7899999999999999996 3333322 223333211111122234467788888889999999888777666543211
Q ss_pred CCCCcchHHHHHHHhh-CCChHHHHH-HHhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHH
Q 011888 124 VDGPEGKKERLLKIFE-GWCDNVVDL-ILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDG 201 (475)
Q Consensus 124 ~~~~~~~~~~l~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da 201 (475)
.......++.+.+... ...+.+.+. ..+.+...+...+.....+... ...+++|+|||++..||++|+||+.|+.||
T Consensus 79 ~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~~~-~~~G~vllGDA~nmrHPLTGgGMTVAl~Dv 157 (276)
T PF08491_consen 79 SVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPASPN-WKPGVVLLGDAANMRHPLTGGGMTVALNDV 157 (276)
T ss_pred CccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCCCC-CCCCEEEEehhhcCcCCccccchhhHHHHH
Confidence 1111123334443333 233344332 2233333444444443333333 447799999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccC
Q 011888 202 YQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 276 (475)
Q Consensus 202 ~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 276 (475)
..|++.|...-. -.+.....++++.|+.+|++....+.-++.. +..+|..+...++.+|+..+.
T Consensus 158 ~lL~~lL~~~~d----l~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~a-------LY~lF~a~~~~l~~Lr~gcf~ 221 (276)
T PF08491_consen 158 VLLRDLLSPIPD----LSDTKAVLEALKKFHWKRKPLSSVINILAQA-------LYSLFAADDDYLKALRQGCFK 221 (276)
T ss_pred HHHHHHHhhhcC----cccHHHHHHHHHHHHHHHccchHHHHHHHHH-------HHHHHhCCCHHHHHHHHHHHH
Confidence 999999988611 2234567889999999999998866655543 334556555556666665443
No 51
>PRK11445 putative oxidoreductase; Provisional
Probab=99.77 E-value=2.1e-17 Score=164.55 Aligned_cols=208 Identities=16% Similarity=0.130 Sum_probs=117.6
Q ss_pred hHHHHHhhccCC-CeEEcCcEEEEEEeeCCeEEEEE-cCCc--EEEecEEEEecCCCCcccccccCCC-CCcccceEEEE
Q 011888 2 TLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVL-ENGQ--CYAGDLLIGADGIWSKVRKNLFGPQ-EAIYSGYTCYT 76 (475)
Q Consensus 2 ~L~~~L~~~~~~-~~i~~~~~v~~v~~~~~~v~v~~-~dG~--~~~adlvVGADG~~S~vR~~l~~~~-~~~~~~~~~~~ 76 (475)
+|++.|.+.++. .++++++++++++++++++.|++ ++|+ +++||+||+|||++|.+|+.+.... ...| .++.
T Consensus 100 ~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~~~~~~~~~---~~~~ 176 (351)
T PRK11445 100 KFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSMVRRHLYPDHQIRKY---VAIQ 176 (351)
T ss_pred HHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcHHhHHhcCCCchhhE---EEEE
Confidence 467777776544 37899999999998888888886 5675 6899999999999999999884322 2223 2222
Q ss_pred EEeccCCCCcCCcceEEEec---CceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCC
Q 011888 77 GIADFVPADIESVGYRVFLG---HKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATD 153 (475)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 153 (475)
..... +.. .+ .+.+++. ...+.+.+|..+.. ...... +. .......+.+.+.+........+.+..
T Consensus 177 ~~~~~-~~~-~~-~~~~~f~~~~~~~~~W~~p~~~~~-~~g~~~--~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~-- 245 (351)
T PRK11445 177 QWFAE-KHP-VP-FYSCIFDNEITDCYSWSISKDGYF-IFGGAY--PM---KDGRERFETLKEKLSAFGFQFGKPVKT-- 245 (351)
T ss_pred EEecC-CCC-CC-CcceEEeccCCCceEEEeCCCCcE-Eecccc--cc---cchHHHHHHHHHHHHhccccccccccc--
Confidence 22111 111 01 1111111 23445555553322 111111 10 001111112222221111000000000
Q ss_pred ccceeecccccCCCCc--cccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHH
Q 011888 154 EEAILRRDIYDRTPIF--TWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSY 231 (475)
Q Consensus 154 ~~~~~~~~~~~~~~~~--~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y 231 (475)
....+....... .+.++|++|||||||.++|++|||+|+|++|+..|++.|.+.. ...|+.|
T Consensus 246 ----~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~------------~~~~~~y 309 (351)
T PRK11445 246 ----EACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP------------EKLNTAY 309 (351)
T ss_pred ----ccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc------------cchHHHH
Confidence 000011101112 2346899999999999999999999999999999999997642 4568899
Q ss_pred HHHhhHHH
Q 011888 232 ERARRLRV 239 (475)
Q Consensus 232 ~~~R~~~~ 239 (475)
++..+.-.
T Consensus 310 ~~~~~~~~ 317 (351)
T PRK11445 310 WRKTRKLR 317 (351)
T ss_pred HHHHHHHH
Confidence 99776554
No 52
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.76 E-value=1.3e-16 Score=161.38 Aligned_cols=222 Identities=17% Similarity=0.152 Sum_probs=127.6
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEe---eCCeEEEEE--cC-----C--cEEEecEEEEecCCCCcccccccCCCCC
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKD---HGDKVSVVL--EN-----G--QCYAGDLLIGADGIWSKVRKNLFGPQEA 67 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~---~~~~v~v~~--~d-----G--~~~~adlvVGADG~~S~vR~~l~~~~~~ 67 (475)
.|++.|.+.+.. .+++.++ +++++. .++.+.|++ .+ | .+++|++||||||++|.||+.+... .
T Consensus 94 ~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~g~~-~- 170 (398)
T TIGR02028 94 VLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEIDAG-D- 170 (398)
T ss_pred HHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHhCCC-C-
Confidence 356677776653 3677764 777753 234455554 22 3 3799999999999999999998321 1
Q ss_pred cccceEEEEEEeccCCC--CcCCcceEEEec----CceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCC
Q 011888 68 IYSGYTCYTGIADFVPA--DIESVGYRVFLG----HKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGW 141 (475)
Q Consensus 68 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (475)
+.....+......... .......++|++ ++.+.+.+|.++ ...+ ...... .......+.+.+...
T Consensus 171 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~-~~~V-G~g~~~------~~~~~~~~~~~l~~~ 241 (398)
T TIGR02028 171 -YSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCD-HVAV-GTGTVA------AKPEIKRLQSGIRAR 241 (398)
T ss_pred -cceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCC-eEEE-EEEeCC------CCccHHHHHHhhhhh
Confidence 1111222222211111 122233455654 456888899874 3332 221110 111122333333211
Q ss_pred ChHHHHHHHhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCCh
Q 011888 142 CDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTP 221 (475)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~ 221 (475)
....+.......+...++.. ...++|..++++|||||||.++|++|+|+++||+++..+|+.+.++++.+ ..
T Consensus 242 ---~~~~~~~~~~~~~~~~~ip~-~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~----~~ 313 (398)
T TIGR02028 242 ---AAGKVAGGRIIRVEAHPIPE-HPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLG----GA 313 (398)
T ss_pred ---hhhccCCCcEEEEEEEeccc-cccccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcC----CC
Confidence 00001011111122222322 23457888999999999999999999999999999999999999887642 11
Q ss_pred hhHHHHHHHHHHHhhHHHHHHH
Q 011888 222 IDIVSALKSYERARRLRVAVIH 243 (475)
Q Consensus 222 ~~~~~~L~~Y~~~R~~~~~~~~ 243 (475)
......|+.|++..+.......
T Consensus 314 ~~~~~~l~~Y~~~~~~~~~~~~ 335 (398)
T TIGR02028 314 VTEEGDLAGYLRRWDKEYRPTY 335 (398)
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 1235679999997766554333
No 53
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.73 E-value=1.1e-17 Score=124.68 Aligned_cols=67 Identities=40% Similarity=0.732 Sum_probs=62.0
Q ss_pred EEecCCCCCCCCCceeeeCCccccccceEEEEECC-eEEEEEcCCccceeeccCCCceeecCCCCcEEeCCCCEEEeC
Q 011888 367 YLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDG-AFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFG 443 (475)
Q Consensus 367 ~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~-~~~i~D~~S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g 443 (475)
++|||++.|+ |+++++.|||.||.|.++++ .|+|+|++|+|||||||. ++.++.++.|++||+|+||
T Consensus 1 ~~iGR~~~~d-----i~l~~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~-----~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCD-----IVLPDPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQ-----RLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSS-----EEETSTTSSTTSEEEEEETTEEEEEEESSSSS-EEETTE-----EESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCCCC-----EEECCHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCE-----EcCCCCEEECCCCCEEEcC
Confidence 5899998777 99999999999999999988 999999999999999999 9999999999999999998
No 54
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.67 E-value=6.6e-15 Score=148.89 Aligned_cols=222 Identities=15% Similarity=0.073 Sum_probs=120.9
Q ss_pred hHHHHHhhccCCC--eEEcCcEEEEEEee-CCeEEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCcccceEEEEEE
Q 011888 2 TLQQILAKAVGDE--IILNESNVIDFKDH-GDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGI 78 (475)
Q Consensus 2 ~L~~~L~~~~~~~--~i~~~~~v~~v~~~-~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~~~~~~ 78 (475)
+|.+.|.+.+... .+ ...++++++.+ ++.+.|++.+|++++|++||+|||.+|.+|+...+.. ..+.....+...
T Consensus 86 ~l~~~l~~~~~~~gv~~-~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~-~~~q~~~G~~~~ 163 (388)
T TIGR01790 86 RLHEELLQKCPEGGVLW-LERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLN-VGFQVAYGVEAR 163 (388)
T ss_pred HHHHHHHHHHHhcCcEE-EccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCCCC-ceEEEEEEEEEE
Confidence 4667777765532 44 46689998877 5677888888989999999999999998765442211 112111111111
Q ss_pred eccCCCCcCCc-ceEEEecC--------ce--EEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHH
Q 011888 79 ADFVPADIESV-GYRVFLGH--------KQ--YFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVD 147 (475)
Q Consensus 79 ~~~~~~~~~~~-~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 147 (475)
....+.+.+.. .+.+...+ .. +++.+|.+++...+.... .... +....+.+.+.+..+.....-
T Consensus 164 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~-~~~~----~~~~~~~~~~~l~~~~~~~g~ 238 (388)
T TIGR01790 164 LSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETS-LADR----PALPRDRLRQRILARLNAQGW 238 (388)
T ss_pred EcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEecc-ccCC----CCCCHHHHHHHHHHHHHHcCC
Confidence 11111111110 01110011 12 566778877654332111 0000 111222333332221111000
Q ss_pred HHHhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHH
Q 011888 148 LILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSA 227 (475)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~ 227 (475)
.............|+. ....+..+|++|||||||.++|++|+|++.|++++..|++.|.+++..+ ...+
T Consensus 239 ~~~~i~~~~~~~iP~~---~~~~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~--------~~~~ 307 (388)
T TIGR01790 239 QIKTIEEEEWGALPVG---LPGPFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS--------SELA 307 (388)
T ss_pred eeeEEEeeeeEEEecc---cCCCccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC--------HHHH
Confidence 0000000011111221 1113478999999999999999999999999999999999999887532 3677
Q ss_pred HHHHHHHhhHHHHH
Q 011888 228 LKSYERARRLRVAV 241 (475)
Q Consensus 228 L~~Y~~~R~~~~~~ 241 (475)
++.|++..+++..+
T Consensus 308 ~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 308 TAAWDGLWPTERRR 321 (388)
T ss_pred HHHHHHhchHHHHH
Confidence 88887665555443
No 55
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.64 E-value=4.6e-14 Score=142.77 Aligned_cols=222 Identities=20% Similarity=0.169 Sum_probs=137.4
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCC-cEEEecEEEEecCCCCcccccccCCCCCcccceEEEEEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENG-QCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGI 78 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG-~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~~~~~~ 78 (475)
.|.+.|.+.+.+ ..++.+++++++..+++++.+....+ .+++|++||+|||++|.+++.+................+
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~ 175 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEV 175 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCCCCCChhheeEEeEEE
Confidence 356667766653 37999999999999888876655544 789999999999999999999943311111111222222
Q ss_pred eccCCCCcCCcceEEE-----ecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCC
Q 011888 79 ADFVPADIESVGYRVF-----LGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATD 153 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 153 (475)
.. .| .+.....++ ..++++.+++|..++...+-+...... ....... +..+.|..- +.....+....
T Consensus 176 ~~-~~--~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~---~~~~~~~-~~l~~f~~~-~~~~~~~~~~~ 247 (396)
T COG0644 176 IE-VP--DDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD---PSLSPFL-ELLERFKEH-PAIRKLLLGGK 247 (396)
T ss_pred Ee-cC--CCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC---cCCCchH-HHHHHHHhC-cccchhccCCc
Confidence 21 22 112222222 235678899999988666655443322 1111122 333333321 11222221112
Q ss_pred ccceeecccccCCCCcc-ccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHH
Q 011888 154 EEAILRRDIYDRTPIFT-WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYE 232 (475)
Q Consensus 154 ~~~~~~~~~~~~~~~~~-~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~ 232 (475)
...+....+........ ++.++++||||||..++|++|+|+..|+..+..+|+.|.++...+ ...|..|+
T Consensus 248 ~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~---------~~~l~~Y~ 318 (396)
T COG0644 248 ILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG---------EEALAEYE 318 (396)
T ss_pred eEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC---------hhHHHHHH
Confidence 22222222322222223 788999999999999999999999999999999999999986531 56788888
Q ss_pred HHhhHHHH
Q 011888 233 RARRLRVA 240 (475)
Q Consensus 233 ~~R~~~~~ 240 (475)
+..+....
T Consensus 319 ~~~~~~~~ 326 (396)
T COG0644 319 RLLRKSLA 326 (396)
T ss_pred HHHHHHHH
Confidence 88776544
No 56
>PRK10015 oxidoreductase; Provisional
Probab=99.58 E-value=6.8e-14 Score=142.67 Aligned_cols=226 Identities=15% Similarity=0.061 Sum_probs=128.2
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccccccc-CCCCCcccceEEEEEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGI 78 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~-~~~~~~~~~~~~~~~~ 78 (475)
.|++.|.+.+.. .+++.+++|+++..+++++.....++.+++|++||+|||.+|.+++.+. ...........++...
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~ 188 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEV 188 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcchhhhcccCCCcCCCcCeEEEEEEEE
Confidence 356667766543 3789999999998777777644455668999999999999999999872 2111111111222222
Q ss_pred eccCCCCc---------CCcceEEEec--Cce---EEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChH
Q 011888 79 ADFVPADI---------ESVGYRVFLG--HKQ---YFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDN 144 (475)
Q Consensus 79 ~~~~~~~~---------~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 144 (475)
.. .+... ......++.+ .+. ..++++. .+.+.+-+....... ........++++.|. .+|.
T Consensus 189 ~~-~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~~-~d~v~vGv~~~~~~~--~~~~~~~~~~l~~~~-~~p~ 263 (429)
T PRK10015 189 IG-LTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTN-KDSISLGLVCGLGDI--AHAQKSVPQMLEDFK-QHPA 263 (429)
T ss_pred Ee-CCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEEc-CCcEEEEEEEehhhh--ccCCCCHHHHHHHHh-hChH
Confidence 21 11110 0011111111 111 1122332 233332221111000 001223445556564 3555
Q ss_pred HHHHHHhCCccceeeccccc--CCCCccccCCcEEEEcccccccC--CccccchhhhHHHHHHHHHHHHHHhhccCCCCC
Q 011888 145 VVDLILATDEEAILRRDIYD--RTPIFTWGRGRVTLLGDSVHAMQ--PNLGQGGCMAIEDGYQLAVELEKACKKSNESKT 220 (475)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~grvvLvGDAAH~~~--P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~ 220 (475)
+.+++............+.. ....++.+.++++|+||||..++ |++|+||++||.++..+|+.+.++++.+
T Consensus 264 ~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~----- 338 (429)
T PRK10015 264 IRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERA----- 338 (429)
T ss_pred HHHHhcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcC-----
Confidence 66655433222222222221 12345678899999999999998 5699999999999999999999987742
Q ss_pred hhhHHHHHHHHHHHhhHH
Q 011888 221 PIDIVSALKSYERARRLR 238 (475)
Q Consensus 221 ~~~~~~~L~~Y~~~R~~~ 238 (475)
+.....|+.|++.-+..
T Consensus 339 -d~s~~~l~~Y~~~~~~~ 355 (429)
T PRK10015 339 -DFSASSLAQYKRELEQS 355 (429)
T ss_pred -CCccccHHHHHHHHHHC
Confidence 12356689999877654
No 57
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.57 E-value=1.4e-13 Score=140.45 Aligned_cols=227 Identities=15% Similarity=0.073 Sum_probs=129.2
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCcccce-EEEEEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGY-TCYTGI 78 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~-~~~~~~ 78 (475)
+|++.|.+.+.. ..++.+++|++++.+++.+.+...+|.+++|++||+|||.+|.+++.+.-......... ..+...
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s~l~~~lgl~~~~~~~~~av~~~~~ 188 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKEL 188 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCHHHHHHcCCCCCCCCcEEEEEEEEE
Confidence 466777776643 37899999999988777765555677889999999999999999998721111222221 111111
Q ss_pred eccCCCC-cC-------Cc-ceEEEec--Cce---EEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChH
Q 011888 79 ADFVPAD-IE-------SV-GYRVFLG--HKQ---YFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDN 144 (475)
Q Consensus 79 ~~~~~~~-~~-------~~-~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 144 (475)
... +.. .+ .. ...++.+ ..+ ..+.++. .+.+.+.+..... . .........++.+.|.. .|.
T Consensus 189 ~~~-~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~~~~~-~~~~svG~~~~~~-~-~~~~~~~~~~~l~~~~~-~p~ 263 (428)
T PRK10157 189 IEL-PKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTN-ENTLSLGLVCGLH-H-LHDAKKSVPQMLEDFKQ-HPA 263 (428)
T ss_pred EEc-CHHHHHHhhccCCCCCeEEEEEECCCCCCcCceeEEEc-CCeEEEEEEEehH-H-hcccCCCHHHHHHHHHh-Cch
Confidence 111 111 00 11 1122222 010 1122232 2333332222111 0 00112334455565643 344
Q ss_pred HHHHHHhCCccceeec--ccccCCCCccccCCcEEEEcccccccCC--ccccchhhhHHHHHHHHHHHHHHhhccCCCCC
Q 011888 145 VVDLILATDEEAILRR--DIYDRTPIFTWGRGRVTLLGDSVHAMQP--NLGQGGCMAIEDGYQLAVELEKACKKSNESKT 220 (475)
Q Consensus 145 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~grvvLvGDAAH~~~P--~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~ 220 (475)
+...+.......+... +.......++...++++|+||||..++| ++|+|+++|+..+..+|+.+.++++.+
T Consensus 264 v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~----- 338 (428)
T PRK10157 264 VAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSD----- 338 (428)
T ss_pred HHHHhCCCeEHHHHhhHhhcCCcccCCceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcC-----
Confidence 4444432221111111 1111123346678999999999999998 599999999999999999999988753
Q ss_pred hhhHHHHHHHHHHHhhHHH
Q 011888 221 PIDIVSALKSYERARRLRV 239 (475)
Q Consensus 221 ~~~~~~~L~~Y~~~R~~~~ 239 (475)
......|..|++.-+..+
T Consensus 339 -~~s~~~l~~Y~~~l~~~~ 356 (428)
T PRK10157 339 -DFSKQKLAEYRQHLESGP 356 (428)
T ss_pred -CcchhhHHHHHHHHHHhH
Confidence 234567999998766654
No 58
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.57 E-value=7.8e-14 Score=139.39 Aligned_cols=218 Identities=11% Similarity=0.020 Sum_probs=119.4
Q ss_pred hHHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCcccceEEEEEEecc
Q 011888 2 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADF 81 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~ 81 (475)
+|.+.|++.++.. ++++++|+++ ++++|++ ++|++++|++||+|||.+|.--.. .-+.....+.....
T Consensus 90 ~f~~~l~~~l~~~-i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~------~~~Q~f~G~~~r~~- 157 (370)
T TIGR01789 90 RFHEGLLQAFPEG-VILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFKPSAHLK------GGFQVFLGREMRLQ- 157 (370)
T ss_pred HHHHHHHHhhccc-EEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCCCCcccc------ceeeEEEEEEEEEc-
Confidence 5778888877665 7779999988 4555555 789999999999999999852211 11111122221111
Q ss_pred CCCCcCCcceEE--Ee---cCc-eEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCCcc
Q 011888 82 VPADIESVGYRV--FL---GHK-QYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEE 155 (475)
Q Consensus 82 ~~~~~~~~~~~~--~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 155 (475)
.| ++.....+ |. ..+ .++...|.+++...|-...-.+. +....+.+.+.+..+.....-.+......
T Consensus 158 ~p--~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~~-----~~l~~~~l~~~l~~~~~~~g~~~~~i~~~ 230 (370)
T TIGR01789 158 EP--HGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYADD-----PLLDRNALSQRIDQYARANGWQNGTPVRH 230 (370)
T ss_pred CC--CCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccCC-----CCCCHHHHHHHHHHHHHHhCCCceEEEEe
Confidence 22 22221111 11 233 33444788888776632221110 11223344443333211000000000000
Q ss_pred ceeecccccCC-CCcccc-CCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHH
Q 011888 156 AILRRDIYDRT-PIFTWG-RGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYER 233 (475)
Q Consensus 156 ~~~~~~~~~~~-~~~~~~-~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~ 233 (475)
+.-..|+.... ....|. .++++++|||||.++|.+|||++.+++||..|++.+.. + .....+++..|..
T Consensus 231 e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~--~-------~~~~~~~~~~~~~ 301 (370)
T TIGR01789 231 EQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDL--S-------SEQLAAFIDSRAR 301 (370)
T ss_pred eeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHhccCc--C-------ccchhhhhhHHHH
Confidence 00111221100 112333 45699999999999999999999999999999988841 1 1133566789999
Q ss_pred HhhHHHHHHHHHHH
Q 011888 234 ARRLRVAVIHGLAR 247 (475)
Q Consensus 234 ~R~~~~~~~~~~s~ 247 (475)
.|+++.....-+-+
T Consensus 302 ~~~~~~~~~~~~~~ 315 (370)
T TIGR01789 302 RHWSKTGYYRLLNR 315 (370)
T ss_pred HHHHHhHHHHHHHH
Confidence 98888765443333
No 59
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.48 E-value=4.8e-13 Score=108.16 Aligned_cols=97 Identities=38% Similarity=0.592 Sum_probs=80.1
Q ss_pred EEEEecCCCCcccccEEEeecCCCCCEEecCCCCC-CCCCceeeeCCccccccceEEEEEC-CeEEEEEcCCccceeecc
Q 011888 341 WFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHE-DFSRTSIVIPSAQVSKMHARISYKD-GAFYLIDLQSEHGTYVTD 418 (475)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~-~~~~~~i~~~~~~vSr~Ha~i~~~~-~~~~i~D~~S~nGt~vn~ 418 (475)
|.|....+. .....+.|. . +..++|||+..+ + +.++++.|||.||+|.++. +.+++.|+.|+||||||+
T Consensus 2 ~~L~~~~~~-~~~~~~~l~-~--~~~~~iGr~~~~~~-----i~l~~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~ 72 (102)
T cd00060 2 PRLVVLSGD-ASGRRYYLD-P--GGTYTIGRDSDNCD-----IVLDDPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNG 72 (102)
T ss_pred eEEEEecCC-CceeEEEEC-C--CCeEEECcCCCcCC-----EEcCCCCeeCcceEEEEcCCCCEEEEECCCCCCeEECC
Confidence 445555443 234788888 3 155999999999 6 9999999999999999997 899999999999999999
Q ss_pred CCCceeecCCCCcEEeCCCCEEEeCCCceEEEEE
Q 011888 419 NEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRV 452 (475)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~ 452 (475)
. ++.++.+..|.+||.|.||.. ...|++
T Consensus 73 ~-----~~~~~~~~~l~~gd~i~ig~~-~~~~~~ 100 (102)
T cd00060 73 Q-----RVSPGEPVRLRDGDVIRLGNT-SISFRF 100 (102)
T ss_pred E-----ECCCCCcEECCCCCEEEECCe-EEEEEE
Confidence 9 998878899999999999974 335554
No 60
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.44 E-value=4.7e-13 Score=133.13 Aligned_cols=85 Identities=31% Similarity=0.525 Sum_probs=75.1
Q ss_pred cccEEEeecCCCCCEEecCCCCCCCCCceeeeCCcc--ccccceEEEEECCeEEEEEcCCccceeec--cCCCceeecCC
Q 011888 353 SQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQ--VSKMHARISYKDGAFYLIDLQSEHGTYVT--DNEGRRYRVSS 428 (475)
Q Consensus 353 ~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~--vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn--~~~~~~~~~~~ 428 (475)
...+.+. ... .+|||++.|+ ++++++. ||+.||+|.++++.|+|+|+ |+|||||| |. ++.+
T Consensus 16 ~~~~~f~-~~~---~~IGR~~~~d-----~~l~d~~~~VS~~Ha~I~~~~g~~~l~Dl-StNGT~VN~sg~-----~l~~ 80 (396)
T TIGR03354 16 AAQKTFG-TNG---GTIGRSEDCD-----WVLPDPERHVSGRHARIRYRDGAYLLTDL-STNGVFLNGSGS-----PLGR 80 (396)
T ss_pred ceEEEEC-CCC---EEEecCCCCC-----EEeCCCCCCcchhhcEEEEECCEEEEEEC-CCCCeEECCCCC-----CCCC
Confidence 3678888 444 9999999888 9999988 99999999999999999999 99999999 77 8888
Q ss_pred CCcEEeCCCCEEEeCCCceEEEEEEEe
Q 011888 429 NFPARFRPSDTIEFGSDKKAIFRVKVI 455 (475)
Q Consensus 429 ~~~~~l~~gd~i~~g~~~~~~~~~~~~ 455 (475)
+.++.|++||+|+||.. .+++.+.
T Consensus 81 ~~~~~L~~GD~I~iG~~---~lrv~~~ 104 (396)
T TIGR03354 81 GNPVRLEQGDRLRLGDY---EIRVSLG 104 (396)
T ss_pred CCceEcCCCCEEEECCE---EEEEEeC
Confidence 88899999999999998 5555553
No 61
>PLN02697 lycopene epsilon cyclase
Probab=99.39 E-value=1.8e-11 Score=126.60 Aligned_cols=228 Identities=13% Similarity=0.076 Sum_probs=125.7
Q ss_pred hHHHHHhhccCC-CeEEcCcEEEEEEeeCCeEE-EEEcCCcEEEecEEEEecCCCCcccccc-cCCCCCcccceEEEEEE
Q 011888 2 TLQQILAKAVGD-EIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCYTGI 78 (475)
Q Consensus 2 ~L~~~L~~~~~~-~~i~~~~~v~~v~~~~~~v~-v~~~dG~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~~~~ 78 (475)
+|.+.|++++.. +..+.+++|++++.+++++. +++.+|.+++|++||+|||.+|. +.+ .....+.+....++...
T Consensus 193 ~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ 270 (529)
T PLN02697 193 LLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG--RLLQYEVGGPRVCVQTAYGVE 270 (529)
T ss_pred HHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh--hhhccccCCCCcccEEEEEEE
Confidence 466777776643 32336789999988777765 45678889999999999999993 222 11112222222333333
Q ss_pred eccCCCCcCCcceEEEec---------------CceEEEEEeCCCCeEEEEEE-EeCCCCCCCCCcchHHHHHHHhhCCC
Q 011888 79 ADFVPADIESVGYRVFLG---------------HKQYFVSSDVGAGKMQWYAF-HKEPAGGVDGPEGKKERLLKIFEGWC 142 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ 142 (475)
+.....+.+... .++++ ...+++.+|.+++...+-.. +...+ . ...+...+.+.+.+....
T Consensus 271 ve~~~~~~d~~~-~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~~-~-l~~~~l~~~L~~~l~~~G 347 (529)
T PLN02697 271 VEVENNPYDPSL-MVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLASKD-A-MPFDLLKKRLMSRLETMG 347 (529)
T ss_pred EEecCCCCCcch-heeeccccccccccccccCCCceEEEEeecCCCeEEEEEeeeccCC-C-CCHHHHHHHHHHHHHhCC
Confidence 222111122111 12211 12456677887776554221 11110 0 001122233333332210
Q ss_pred hHHHHHHHhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCC---
Q 011888 143 DNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESK--- 219 (475)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~--- 219 (475)
+............+....+.+.. .++++++||||..+||.+|-|+..++.+|..+|+.++++++.+....
T Consensus 348 ------i~~~~i~~~E~g~iPm~g~~~~~-~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~ 420 (529)
T PLN02697 348 ------IRILKTYEEEWSYIPVGGSLPNT-EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLG 420 (529)
T ss_pred ------CCcceEEEEEeeeecCCCCCccc-CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccc
Confidence 00011111111112111122233 68999999999999999999999999999999999999997542000
Q ss_pred ChhhHHHHHHHHHHHhhHHHHH
Q 011888 220 TPIDIVSALKSYERARRLRVAV 241 (475)
Q Consensus 220 ~~~~~~~~L~~Y~~~R~~~~~~ 241 (475)
........++.|++.......+
T Consensus 421 ~~~~~~~~l~~~~~lw~~e~~r 442 (529)
T PLN02697 421 TSNSSNISMQAWNTLWPQERKR 442 (529)
T ss_pred cccchHHHHHHHHHhChHHHHH
Confidence 0124578889888876665443
No 62
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.35 E-value=4.5e-11 Score=113.65 Aligned_cols=221 Identities=18% Similarity=0.135 Sum_probs=137.1
Q ss_pred CcEEEEEEeeCC---eEEEEEcCCc--EEEecEEEEecCCCCcccccccCCCCC-cccceEEEEEEeccCCCCcCCcceE
Q 011888 19 ESNVIDFKDHGD---KVSVVLENGQ--CYAGDLLIGADGIWSKVRKNLFGPQEA-IYSGYTCYTGIADFVPADIESVGYR 92 (475)
Q Consensus 19 ~~~v~~v~~~~~---~v~v~~~dG~--~~~adlvVGADG~~S~vR~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (475)
.-+|.++-++++ ||+.....|+ +..|-|-|.|||..|..|+.+..+... ..+. +.+++-.-.....+...+
T Consensus 167 eGtV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~V~S~---fVG~vl~N~~l~~p~hgh 243 (509)
T KOG1298|consen 167 EGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEEVPSY---FVGLVLKNCRLPAPNHGH 243 (509)
T ss_pred eeeHHHHHhccCeEEeEEEecCCCceEEEecceEEEecchhHHHHHHhcCCcccccchh---eeeeeecCCCCCCCCcce
Confidence 345666655554 3444444454 567899999999999999999654333 2222 223322222223334456
Q ss_pred EEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhh-CCChHHHHHHHh-CCccceeecccccCCCCcc
Q 011888 93 VFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFE-GWCDNVVDLILA-TDEEAILRRDIYDRTPIFT 170 (475)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 170 (475)
+.+++....++++++.......+-++.+.-...........+.+... ..++.+.+.... .+...+...+.. ..+...
T Consensus 244 vIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~-~mpa~~ 322 (509)
T KOG1298|consen 244 VILSKPSPILVYQISSTEVRCLVDVPGQKLPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNS-SMPATL 322 (509)
T ss_pred EEecCCCcEEEEEecchheEEEEecCcccCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccc-cCCCCc
Confidence 77887788888999888877766554322211111112233333332 334444443332 222222222211 223345
Q ss_pred ccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhHHHHHHHHHHH
Q 011888 171 WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 247 (475)
Q Consensus 171 ~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~ 247 (475)
..+.+++|+|||-..-||.+|-||.-|+.|+..|-+.|....+- .+.+.+.+.+.+|...|++....+..++.
T Consensus 323 ~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL----~d~ekv~~~i~sFy~~RKp~s~tINtLa~ 395 (509)
T KOG1298|consen 323 NDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDL----SDAEKVSDYIKSFYWIRKPYSATINTLAN 395 (509)
T ss_pred CCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhcccccc----ccHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 56688999999999999999999999999999999999774332 34566788899999999998877766654
No 63
>PLN02463 lycopene beta cyclase
Probab=99.34 E-value=5.4e-11 Score=121.25 Aligned_cols=223 Identities=15% Similarity=0.150 Sum_probs=122.8
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCcccce-EEEEEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGY-TCYTGI 78 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~-~~~~~~ 78 (475)
+|.+.|++++.. .+++ ..+|++++.+++++.|++++|++++||+||+|||.+|++++.- .+...++ .++...
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~~----~~~~~g~Q~a~Gi~ 189 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQYD----KPFNPGYQVAYGIL 189 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccCCC----CCCCccceeeeeEE
Confidence 466777776653 2444 5799999998888999999999999999999999999987542 1111221 222222
Q ss_pred ecc--CCCCcCCcceEEE----ec--------C---ceEEEEEeCCCCeEEEEEE--EeCCCCCCCCCcchHHHHHHHhh
Q 011888 79 ADF--VPADIESVGYRVF----LG--------H---KQYFVSSDVGAGKMQWYAF--HKEPAGGVDGPEGKKERLLKIFE 139 (475)
Q Consensus 79 ~~~--~~~~~~~~~~~~~----~~--------~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ 139 (475)
+.. .+.+.+...+--| .+ . ..+++.+|.+++.+.+-.. ...+.. ..+..++.+.+.++
T Consensus 190 ~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~~~~---~~~~lk~~L~~~l~ 266 (447)
T PLN02463 190 AEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVARPGL---PMDDIQERMVARLR 266 (447)
T ss_pred eecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEeeeeecCCCC---CHHHHHHHHHHHHH
Confidence 221 1111111000000 00 0 2356777887776432111 111110 01122223333332
Q ss_pred CCChHHHHHHHhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCC-
Q 011888 140 GWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNES- 218 (475)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~- 218 (475)
.+.-. .........+.+....+. ....+|++++||||..++|.+|.|+..++..+..+|+.+.++++.+...
T Consensus 267 ~~Gi~------~~~i~~~E~~~IPmg~~~-~~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~~~~ 339 (447)
T PLN02463 267 HLGIK------VKSVEEDEKCVIPMGGPL-PVIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRSNS 339 (447)
T ss_pred HCCCC------cceeeeeeeeEeeCCCCC-CCCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 21100 001111112222221121 2346799999999999999999999999999999999999998754221
Q ss_pred -CChhhHH---HHHHHHHHHhhHHH
Q 011888 219 -KTPIDIV---SALKSYERARRLRV 239 (475)
Q Consensus 219 -~~~~~~~---~~L~~Y~~~R~~~~ 239 (475)
....-.. +.|..|++.|+...
T Consensus 340 ~~~~~~~~~~w~~lw~~~~~~~~~~ 364 (447)
T PLN02463 340 FRGDELSAEVWNDLWPIERRRQREF 364 (447)
T ss_pred CChHHHHHHHHHHhCCHhHhHhHHH
Confidence 0011112 45666766666544
No 64
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.29 E-value=1.1e-11 Score=112.39 Aligned_cols=69 Identities=30% Similarity=0.502 Sum_probs=64.2
Q ss_pred CCEEecCCCCCCCCCceeeeCCccccccceEEEEECCeEEEEEcCCccceeeccCCCceeecCCCCcEEeCCCCEEEeCC
Q 011888 365 EPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGS 444 (475)
Q Consensus 365 ~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~ 444 (475)
..++|||+..++ +++++..|||.||+|.+++..++++|++|+|||||||. ++.+ .+.|++||.|.||.
T Consensus 89 ~~~tigr~~~~~-----i~~~~~~vSR~Ha~l~~~~~~~~~~d~~S~nGt~vn~~-----~v~~--~~~l~~gd~i~i~~ 156 (191)
T COG1716 89 PVTTIGRDPDND-----IVLDDDVVSRRHAELRREGNEVFLEDLGSTNGTYVNGE-----KVRQ--RVLLQDGDVIRLGG 156 (191)
T ss_pred ceEEeccCCCCC-----EEcCCCccccceEEEEEeCCceEEEECCCCcceEECCe-----EccC--cEEcCCCCEEEECc
Confidence 359999988887 99999999999999999999999999999999999999 7764 68999999999999
Q ss_pred C
Q 011888 445 D 445 (475)
Q Consensus 445 ~ 445 (475)
.
T Consensus 157 ~ 157 (191)
T COG1716 157 T 157 (191)
T ss_pred c
Confidence 8
No 65
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=99.24 E-value=1.1e-11 Score=109.28 Aligned_cols=96 Identities=29% Similarity=0.463 Sum_probs=76.0
Q ss_pred cCCcEEEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEEC------C-------eE
Q 011888 337 MNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKD------G-------AF 403 (475)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~------~-------~~ 403 (475)
+..+|=|-+....... .+..+. ....+++||...- +||.+++++.|++||+|++.. + ..
T Consensus 170 P~kRwrLy~fk~~e~l-~~l~iH---rqs~yL~gRerkI----aDi~idhpScSKQHaviQyR~v~~~r~dGt~grrvkp 241 (293)
T KOG1882|consen 170 PKKRWRLYPFKCYEVL-PVLYIH---RQSCYLDGRERKI----ADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRVKP 241 (293)
T ss_pred chhheecccccCCccc-chheee---eeeeeecCceeee----eccCCCCccccccceeeeeeecccccCCCccceeeee
Confidence 4557877777655332 444554 2445999995543 669999999999999997641 2 37
Q ss_pred EEEEcCCccceeeccCCCceeecCCCCcEEeCCCCEEEeCCC
Q 011888 404 YLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 445 (475)
Q Consensus 404 ~i~D~~S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 445 (475)
||.||+|.||||||.+ +|+|...++|..+|+|.||-.
T Consensus 242 YiiDLgS~NgTfLNnk-----~IepqRYyEL~ekDvlkfgfs 278 (293)
T KOG1882|consen 242 YIIDLGSGNGTFLNNK-----VIEPQRYYELREKDVLKFGFS 278 (293)
T ss_pred EEEecCCCCcceecCc-----ccCchheeeeecCceeeeccc
Confidence 9999999999999999 999999999999999999954
No 66
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.17 E-value=3.4e-11 Score=84.33 Aligned_cols=48 Identities=46% Similarity=0.783 Sum_probs=43.8
Q ss_pred EEecCCC-CCCCCCceeeeCCccccccceEEEEECCe-EEEEEcCCccceeeccC
Q 011888 367 YLIGSES-HEDFSRTSIVIPSAQVSKMHARISYKDGA-FYLIDLQSEHGTYVTDN 419 (475)
Q Consensus 367 ~~iGR~~-~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~-~~i~D~~S~nGt~vn~~ 419 (475)
++|||.+ .|+ ++++++.||+.||+|.++.+. |+|+|++|+|||||||+
T Consensus 1 ~~iGr~~~~~~-----i~~~~~~vs~~H~~i~~~~~~~~~i~d~~s~~gt~vng~ 50 (52)
T smart00240 1 VTIGRSSEDCD-----IQLPGPSISRRHAEIVYDGGGRFYLIDLGSTNGTFVNGK 50 (52)
T ss_pred CEeCCCCCCCC-----EEeCCCCcchhHcEEEECCCCeEEEEECCCCCCeeECCE
Confidence 3799999 666 999999999999999998665 99999999999999998
No 67
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.12 E-value=1.6e-09 Score=111.22 Aligned_cols=216 Identities=15% Similarity=0.103 Sum_probs=118.5
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCe--EEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCccc-ce---E
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDK--VSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYS-GY---T 73 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~--v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~-~~---~ 73 (475)
.+.+.|++.+.+ .+++.+ +|+++..++++ ..|++++|++++||++|-|.|.+|.+.+.++......+. .. .
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~ 233 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDR 233 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEE
T ss_pred HHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccE
Confidence 467778876543 356556 58888776655 368888999999999999999999988875221111111 11 1
Q ss_pred EEEEEeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCC
Q 011888 74 CYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATD 153 (475)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 153 (475)
++...+.... ...+ .......+.++++..|+.++... .+.+..... .++...+.+.+.+... . ...
T Consensus 234 av~~~~~~~~-~~~~-~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~---s~~~A~~~l~~~l~~~-------~-~~~ 299 (454)
T PF04820_consen 234 AVAVQVPNED-PPEP-YTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFI---SDDEAEAELLAYLGGS-------P-EAE 299 (454)
T ss_dssp EEEEEEE-SS-CTTS-SEEEEEESSEEEEEEEESSEEEE-EEEEETTTS---HHHHHHHHHHHHHTCH-------C-TTS
T ss_pred EEEEecCcCC-CCCC-ceeEEecCCceEEEccCCCcceE-EEEeccccC---CHHHHHHHHHHhcchh-------h-hcc
Confidence 2221121111 1122 22233446678888898887665 222222111 0111112222222210 0 011
Q ss_pred ccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHH
Q 011888 154 EEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYER 233 (475)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~ 233 (475)
+ ... .+.. ....+...+|+++|||||..++|+.++|+.+++..+..|++.|... ...+.+++.|++
T Consensus 300 ~-~~i--~~~~-g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~----------~~~~~~~~~Yn~ 365 (454)
T PF04820_consen 300 P-RHI--RFRS-GRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDD----------DFSPAALDRYNR 365 (454)
T ss_dssp C-EEE--E-S--EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCT----------TCCHHHHHHHHH
T ss_pred h-hhh--cccc-cchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccC----------CCCHHHHHHHHH
Confidence 1 111 1111 1123445678999999999999999999999999877777766542 122678999999
Q ss_pred HhhHHHHHHHHHH
Q 011888 234 ARRLRVAVIHGLA 246 (475)
Q Consensus 234 ~R~~~~~~~~~~s 246 (475)
..+.....+..+-
T Consensus 366 ~~~~~~~~~~~fi 378 (454)
T PF04820_consen 366 RMRREYERIRDFI 378 (454)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9888887665443
No 68
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.11 E-value=2.4e-10 Score=110.05 Aligned_cols=85 Identities=33% Similarity=0.433 Sum_probs=72.7
Q ss_pred ccEEEeecCCCCCEEecCCCCCCCCCceeee--CCccccccceEEEEECCeEEEEEcCCccceeeccCCCceeecCCCCc
Q 011888 354 QPIYLSVSHENEPYLIGSESHEDFSRTSIVI--PSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFP 431 (475)
Q Consensus 354 ~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~--~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn~~~~~~~~~~~~~~ 431 (475)
....+. ++. ..|||+++|+ -.| ++..||+.||+|.+.++.|||.|. |.|||||||. .+..+..
T Consensus 19 aq~~f~-~~~---g~IGrs~dcd-----W~i~D~~~~VS~~Hc~I~~~dg~f~L~Dt-S~g~l~VNgs-----~~~~g~~ 83 (430)
T COG3456 19 AQKLFD-RGG---GVIGRSPDCD-----WQIDDPERFVSKQHCTISYRDGGFCLTDT-SNGGLLVNGS-----DLPLGEG 83 (430)
T ss_pred hhhhhh-cCC---cccccCCCCC-----ccccCcccccchhheEEEecCCeEEEEec-CCCceeeccc-----ccCCCCC
Confidence 335555 344 9999999998 666 456899999999999999999997 7999999999 8887777
Q ss_pred -EEeCCCCEEEeCCCceEEEEEEEec
Q 011888 432 -ARFRPSDTIEFGSDKKAIFRVKVIG 456 (475)
Q Consensus 432 -~~l~~gd~i~~g~~~~~~~~~~~~~ 456 (475)
..|+.||+|.+|+. .|+|.+..
T Consensus 84 ~~RLqqGd~i~iG~y---~i~V~l~~ 106 (430)
T COG3456 84 SARLQQGDEILIGRY---IIRVHLSR 106 (430)
T ss_pred ccccccCCEEeeccE---EEEEEecc
Confidence 89999999999998 88888865
No 69
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=98.84 E-value=1.6e-09 Score=110.20 Aligned_cols=81 Identities=26% Similarity=0.481 Sum_probs=70.5
Q ss_pred CCCEEecCCCCCCCCCceeeeCCccccccceEEEEE--CC---------eEEEEEcCCccceeeccCCCceeecCCCCcE
Q 011888 364 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DG---------AFYLIDLQSEHGTYVTDNEGRRYRVSSNFPA 432 (475)
Q Consensus 364 ~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~--~~---------~~~i~D~~S~nGt~vn~~~~~~~~~~~~~~~ 432 (475)
...++|||...|| +.+.|++|||.||.+.+. +- .|+|.|++|++|||+|.. +++|-...
T Consensus 176 ~~~~~fgr~~~cD-----~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~-----rvppk~yi 245 (793)
T KOG1881|consen 176 AAACLFGRLGGCD-----VALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKD-----RVPPKVYI 245 (793)
T ss_pred ceeEEecccCCCc-----cccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccc-----cCCCcchh
Confidence 3448999999887 999999999999999875 22 399999999999999999 99999999
Q ss_pred EeCCCCEEEeCCCceEEEEEEEe
Q 011888 433 RFRPSDTIEFGSDKKAIFRVKVI 455 (475)
Q Consensus 433 ~l~~gd~i~~g~~~~~~~~~~~~ 455 (475)
.++.|++++||.. ..+|.|+-.
T Consensus 246 r~~Vg~v~~fggs-Trl~i~Qgp 267 (793)
T KOG1881|consen 246 RDRVGHVARFGGS-TRLYIFQGP 267 (793)
T ss_pred hhhHHHHHHhcCc-eEEEEeeCC
Confidence 9999999999998 446666654
No 70
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.83 E-value=2e-07 Score=93.64 Aligned_cols=196 Identities=16% Similarity=0.111 Sum_probs=107.6
Q ss_pred hHHHHHhhccC-CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCcccceEEEEEEec
Q 011888 2 TLQQILAKAVG-DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIAD 80 (475)
Q Consensus 2 ~L~~~L~~~~~-~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~ 80 (475)
+|.+.|.+.+. ..+++.+++|++|+.+++++.|++++|++++|++||.|+|..|..-+.. -+.....+...+.
T Consensus 88 ~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~~------~~Q~f~G~~v~~~ 161 (374)
T PF05834_consen 88 DFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSPKARPL------GLQHFYGWEVETD 161 (374)
T ss_pred HHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccccccccc------ccceeEEEEEecc
Confidence 46777777776 3467889999999999988999999999999999999999777722221 1111122221111
Q ss_pred cCCCCcCCcc-eEEEec----CceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCCcc
Q 011888 81 FVPADIESVG-YRVFLG----HKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEE 155 (475)
Q Consensus 81 ~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 155 (475)
..+.+..... +.+-.. ...++...|.+++...+-...-.+....+ .+.-.+.+.+.+....-. ..+..
T Consensus 162 ~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~~~~~-~~~~~~~l~~~l~~~g~~------~~~i~ 234 (374)
T PF05834_consen 162 EPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSPRPALP-EEELKARLRRYLERLGID------DYEIL 234 (374)
T ss_pred CCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcCCCCCC-HHHHHHHHHHHHHHcCCC------ceeEE
Confidence 1111111111 111111 22456667888777544222111111000 111122232222221000 00000
Q ss_pred ceeeccccc-CCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHH
Q 011888 156 AILRRDIYD-RTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEK 210 (475)
Q Consensus 156 ~~~~~~~~~-~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~ 210 (475)
......+.. ......-..++++.+|+||..++|.+|-++-.+++.+..+|+.|..
T Consensus 235 ~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 235 EEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred EeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 011111221 0122233456799999999999999999999988888888888775
No 71
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=98.50 E-value=9.4e-08 Score=87.71 Aligned_cols=102 Identities=27% Similarity=0.510 Sum_probs=79.1
Q ss_pred CCcEEEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEE--CCeEEEEEcCCcccee
Q 011888 338 NGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DGAFYLIDLQSEHGTY 415 (475)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~--~~~~~i~D~~S~nGt~ 415 (475)
.+..+.+..+++.- ...+-+. .+.+++||.... ||.++++.++||.||.+... ...++|.|++|++|||
T Consensus 16 ~g~hldv~k~d~li-~kl~idd----kr~y~Fgrn~q~----~df~idh~scSrvhaa~vyhkhl~~~~lidl~s~hgtf 86 (337)
T KOG1880|consen 16 AGLHLDVVKGDKLI-QKLIIDD----KRRYLFGRNHQT----CDFVIDHASCSRVHAALVYHKHLSRIFLIDLGSTHGTF 86 (337)
T ss_pred CCCceeeeecchhH-HHHHhhh----hhhhhhccCCCc----cceEeecchhhhhHhhhhhhhccceEEEEEccCCccee
Confidence 34455555555532 1334444 555999999876 77999999999999999765 5669999999999999
Q ss_pred eccCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEE
Q 011888 416 VTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKV 454 (475)
Q Consensus 416 vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~ 454 (475)
+... ||.+..+++|..|..+.||...+ .|.++.
T Consensus 87 ~g~~-----rL~~~~p~~l~i~~~~~fgasTr-~y~lr~ 119 (337)
T KOG1880|consen 87 LGNE-----RLEPHKPVQLEIGSTFHFGASTR-IYLLRE 119 (337)
T ss_pred eeee-----eeccCCCccccCCceEEEeccce-eeeeec
Confidence 9988 99999999999999999998633 343433
No 72
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=0.00015 Score=70.52 Aligned_cols=86 Identities=24% Similarity=0.365 Sum_probs=67.8
Q ss_pred ccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEE---------------CCeEEEEEcCCccceeecc
Q 011888 354 QPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK---------------DGAFYLIDLQSEHGTYVTD 418 (475)
Q Consensus 354 ~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~---------------~~~~~i~D~~S~nGt~vn~ 418 (475)
..+.+. +..+++||.+.|+ ..+....+|..|-.|..- ...+++.|. |+||||||.
T Consensus 57 ~~~d~~----nd~f~fGR~~~~d-----~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~Dh-S~nGT~VN~ 126 (475)
T KOG0615|consen 57 KSIDLA----NDEFTFGRGDSCD-----APLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDH-SRNGTFVND 126 (475)
T ss_pred ccceec----cceEEecCCCccc-----ccccCccccccchheeeeeeeeeeeecccCCCccceEEEEec-ccCcccccH
Confidence 445556 4449999998887 777777788888776322 245899996 999999999
Q ss_pred CCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEE
Q 011888 419 NEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKV 454 (475)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~ 454 (475)
. .+..+....|+.||.|.+|-+....|.+..
T Consensus 127 e-----~i~k~~~r~lkN~dei~is~p~~~~~v~~~ 157 (475)
T KOG0615|consen 127 E-----MIGKGLSRILKNGDEISISIPALKIFVFED 157 (475)
T ss_pred h-----HhhccccccccCCCEEEeccchhheeeeec
Confidence 9 999999999999999999997555665555
No 73
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.16 E-value=0.0012 Score=70.80 Aligned_cols=84 Identities=24% Similarity=0.411 Sum_probs=66.6
Q ss_pred EEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEECCe--EEEEEcCCccceeeccCCCceeecCCCCcEE
Q 011888 356 IYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGA--FYLIDLQSEHGTYVTDNEGRRYRVSSNFPAR 433 (475)
Q Consensus 356 ~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~--~~i~D~~S~nGt~vn~~~~~~~~~~~~~~~~ 433 (475)
+.|. .+...|||.+.... .||++....|--+||.|+-+++. +.|.-+ --.-|||||+ ++. .+..
T Consensus 472 Y~ik----eG~TrVG~~~a~~~--~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~-e~aetyVNGk-----~v~--ep~q 537 (1221)
T KOG0245|consen 472 YYIK----EGETRVGREDASSR--QDIVLSGQLIREQHCSIRNEGGNDVVTLEPC-EDAETYVNGK-----LVT--EPTQ 537 (1221)
T ss_pred EEec----cCceecCCCCcccC--CceEecchhhhhhceEEEecCCCceEEeccC-CccceeEccE-----EcC--Ccce
Confidence 6666 44499999876654 55999999999999999998666 666654 5566999999 886 5789
Q ss_pred eCCCCEEEeCCCceEEEEEEEe
Q 011888 434 FRPSDTIEFGSDKKAIFRVKVI 455 (475)
Q Consensus 434 l~~gd~i~~g~~~~~~~~~~~~ 455 (475)
|+.||.|.+|... +|+|.-.
T Consensus 538 L~~GdRiilG~~H--~frfn~P 557 (1221)
T KOG0245|consen 538 LRSGDRIILGGNH--VFRFNHP 557 (1221)
T ss_pred eccCCEEEEcCce--eEEecCH
Confidence 9999999999974 6776543
No 74
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=97.16 E-value=0.0016 Score=66.08 Aligned_cols=76 Identities=9% Similarity=0.170 Sum_probs=59.9
Q ss_pred ccEEEeecCCCCCEEec-CCCCCCCCCceeeeCCccccccceEEEEECCeEEEEEcCCccceeeccCCCceeecCCCCcE
Q 011888 354 QPIYLSVSHENEPYLIG-SESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPA 432 (475)
Q Consensus 354 ~~~~l~~~~~~~~~~iG-R~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn~~~~~~~~~~~~~~~ 432 (475)
..++|. .+. ++|| +++.|+ |++.|+.||++|++|.+....+.+.+ +..++++||. .+......
T Consensus 13 ~~~~L~-~g~---~~iG~~~~~~d-----i~L~d~~~~~~h~~l~v~~~~~~l~~--~~~~~~~~g~-----~~~~~~g~ 76 (410)
T TIGR02500 13 AELPLP-EGN---LVLGTDAADCD-----IVLSDGGIAAVHVSLHVRLEGVTLAG--AVEPAWEEGG-----VLPDEEGT 76 (410)
T ss_pred cEEECC-CCc---eEeccCCCCcE-----EEeCCCCccchheEEEEcCceEEEec--CCcceeECCc-----ccccCCCC
Confidence 889999 555 9999 887776 99999999999999999998898886 5777889983 23222334
Q ss_pred EeCCCCEEEeCCC
Q 011888 433 RFRPSDTIEFGSD 445 (475)
Q Consensus 433 ~l~~gd~i~~g~~ 445 (475)
.|..+..+..|..
T Consensus 77 ~l~~~~~l~~g~~ 89 (410)
T TIGR02500 77 PLPSGTPLLVAGV 89 (410)
T ss_pred ccCCCCceeccee
Confidence 5777777777766
No 75
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=96.93 E-value=0.0022 Score=64.16 Aligned_cols=89 Identities=17% Similarity=0.290 Sum_probs=72.5
Q ss_pred ccEEEeecCCCCCEEecCCCCCCCCCceeee--CCccccccceEEEEE-CCeEEEEEcCCccceeeccCCCceeecCCCC
Q 011888 354 QPIYLSVSHENEPYLIGSESHEDFSRTSIVI--PSAQVSKMHARISYK-DGAFYLIDLQSEHGTYVTDNEGRRYRVSSNF 430 (475)
Q Consensus 354 ~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~--~~~~vSr~Ha~i~~~-~~~~~i~D~~S~nGt~vn~~~~~~~~~~~~~ 430 (475)
..+++. +.+ +++||+...-..++|+-. +...|||+.+.|+.. +|.|+|..+| ..-.||||. +|.+|+
T Consensus 441 skh~mr-k~E---VtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlG-K~~I~vng~-----~l~~gq 510 (547)
T KOG2293|consen 441 SKHYMR-KKE---VTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLG-KRSILVNGG-----ELDRGQ 510 (547)
T ss_pred hHhhhc-Ccc---eEeeccCCCcceeeeccccCccceeeccceeEEeccCCcEEeccCc-ceeEEeCCc-----cccCCc
Confidence 446677 445 999999987655555544 445799999999887 7889999995 778999999 999999
Q ss_pred cEEeCCCCEEEeCCCceEEEEEEEe
Q 011888 431 PARFRPSDTIEFGSDKKAIFRVKVI 455 (475)
Q Consensus 431 ~~~l~~gd~i~~g~~~~~~~~~~~~ 455 (475)
.+.|+..-+|+|-.- .|.|++-
T Consensus 511 ~~~L~~nclveIrg~---~FiF~~N 532 (547)
T KOG2293|consen 511 KVILKNNCLVEIRGL---RFIFEIN 532 (547)
T ss_pred eEEeccCcEEEEccc---eEEEeec
Confidence 999999999999987 7777763
No 76
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.76 E-value=0.08 Score=54.86 Aligned_cols=51 Identities=14% Similarity=0.271 Sum_probs=42.2
Q ss_pred hHHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecC
Q 011888 2 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADG 52 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG 52 (475)
.|-+.|.+.+....|+++++|+.|+.+++++.|++.+|+++.||.||.|=-
T Consensus 227 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence 355667776655569999999999999899999888998899999998764
No 77
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.60 E-value=0.16 Score=52.53 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=42.1
Q ss_pred HHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCC
Q 011888 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW 54 (475)
Q Consensus 3 L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~ 54 (475)
|-+.|.+.+....|+++++|+.|+.++++++|++++|++++||.||-|=-..
T Consensus 227 l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 227 LPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred HHHHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 4455666665456999999999999888899998888889999999886643
No 78
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.57 E-value=0.078 Score=52.13 Aligned_cols=53 Identities=28% Similarity=0.456 Sum_probs=40.5
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCeEE-EEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~-v~~~dG~~~~adlvVGADG~~S~ 56 (475)
|...|.+.+.+ ..++.+++|++++.+++++. |...+| +++||.||.|.|.+|.
T Consensus 139 l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 139 LLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred HHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 44555555443 37899999999998777764 555566 7999999999999886
No 79
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.48 E-value=0.13 Score=52.33 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=39.3
Q ss_pred HHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEcCC-----cEEEecEEEEecCCCCc
Q 011888 5 QILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENG-----QCYAGDLLIGADGIWSK 56 (475)
Q Consensus 5 ~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~dG-----~~~~adlvVGADG~~S~ 56 (475)
..|.+.+. ..+++.+++|++++.+++++++.+.++ .+++||.||.|.|.+|.
T Consensus 201 ~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 201 TGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 34445443 237889999999998788777765443 37999999999999985
No 80
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=96.40 E-value=0.0083 Score=63.91 Aligned_cols=97 Identities=21% Similarity=0.282 Sum_probs=74.6
Q ss_pred EEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEECCeEEEEEcCCccceeeccCCC
Q 011888 342 FLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEG 421 (475)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn~~~~ 421 (475)
+++...++.++-+.|.|. ..+.-+|.....+ ..|.+..|.|-.+||.|..-+|.++|.-..--.-|||||.
T Consensus 359 Lve~s~dG~~s~~ri~L~----~~vtEVGs~~~~~---~~iqLfGP~IqprHc~it~meGVvTvTP~~~DA~t~VnGh-- 429 (1629)
T KOG1892|consen 359 LVELSPDGSDSRKRIRLQ----LSVTEVGSEKLDD---NSIQLFGPGIQPRHCDITNMEGVVTVTPRSMDAETYVNGH-- 429 (1629)
T ss_pred EEEEcCCCCCcceeEEec----cCceeccccccCC---cceeeeCCCCCccccchhhccceEEecccccchhhhccce--
Confidence 333334444444778887 5558899887665 3499999999999999999999999998744455999999
Q ss_pred ceeecCCCCcEEeCCCCEEEeCCCceEEEEEEE
Q 011888 422 RRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKV 454 (475)
Q Consensus 422 ~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~ 454 (475)
+|. +...|++|+.|+||... .|+|..
T Consensus 430 ---~is--qttiL~~G~~v~fGa~h--sfkF~d 455 (1629)
T KOG1892|consen 430 ---RIS--QTTILQSGMKVQFGASH--SFKFVD 455 (1629)
T ss_pred ---ecc--hhhhhccCCEEEeccce--eEEecC
Confidence 887 46789999999999975 455544
No 81
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.04 E-value=0.2 Score=54.47 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=44.5
Q ss_pred HHHHHhhccCC-CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~~-~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
|.+.|.+.+.. .+++++++|++++.++++++|.+.+|+.++++.||.|+|.+|.
T Consensus 410 l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 410 LCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 45666666543 4688899999999888888888888888899999999999985
No 82
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.04 E-value=0.24 Score=49.68 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=42.3
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCC-Ccccccc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW-SKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~-S~vR~~l 61 (475)
+.+.|.+.+. ...++.+++|++++.+++++.|++.+| ++++|.||.|.|.. |.+++.+
T Consensus 147 ~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~ 207 (380)
T TIGR01377 147 ALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPL 207 (380)
T ss_pred HHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhc
Confidence 3445554433 347889999999998888888887666 78999777777764 6777766
No 83
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.03 E-value=0.031 Score=58.10 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=68.6
Q ss_pred EEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEE--CCeEEEEEcCCccceeeccC
Q 011888 342 FLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DGAFYLIDLQSEHGTYVTDN 419 (475)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~--~~~~~i~D~~S~nGt~vn~~ 419 (475)
+|++..... ..|+|. ++.++|||+++. .|.|...||+..++..+ .+.+.++-+ ..|.+-|||.
T Consensus 16 ~l~~~~~~~---~~~~~~----~~~~~~gr~pet-------~i~d~~cs~~qv~l~a~~~~~~v~~k~l-g~np~~~~~~ 80 (526)
T TIGR01663 16 TLKPGEAEH---HFIHLD----AGALFLGRGPET-------GIRDRKCSKRQIELQADLEKATVALKQL-GVNPCGTGGL 80 (526)
T ss_pred EecCCCCCC---CeeccC----CCceEEccCccc-------ccchhhhchhhheeeecccCceEEEEEc-cCCCcccCce
Confidence 445554332 667777 555999999987 45689999999999877 666888888 5899999999
Q ss_pred CCceeecCCCCcEEeCCCCEEEeCCC
Q 011888 420 EGRRYRVSSNFPARFRPSDTIEFGSD 445 (475)
Q Consensus 420 ~~~~~~~~~~~~~~l~~gd~i~~g~~ 445 (475)
.+.++....|++||++.+=..
T Consensus 81 -----~~~~~~~~~l~~g~~l~~v~~ 101 (526)
T TIGR01663 81 -----ELKPGGEGELGHGDLLEIVNG 101 (526)
T ss_pred -----EecCCCeeeecCCCEEEEecc
Confidence 999999999999999999876
No 84
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.63 E-value=0.69 Score=46.52 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=44.4
Q ss_pred HHHHHhhccCC-CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~~-~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
+...|.+.+.. .+++.+++|++++.+++++.|++.+|++++||.||-|.|.+|.
T Consensus 137 ~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 137 LCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred HHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 44566666554 4788999999999888888898888888999999999999874
No 85
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=95.60 E-value=0.78 Score=47.13 Aligned_cols=53 Identities=25% Similarity=0.228 Sum_probs=42.5
Q ss_pred HHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCC
Q 011888 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 55 (475)
Q Consensus 3 L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S 55 (475)
|.+.|.+.+....|+++++|++|+.++++++|++++|+++.||.||.|=-.+.
T Consensus 223 l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~ 275 (451)
T PRK11883 223 LIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPV 275 (451)
T ss_pred HHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHH
Confidence 44556665554469999999999998889999999999999999999855443
No 86
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.45 E-value=0.077 Score=52.40 Aligned_cols=54 Identities=28% Similarity=0.374 Sum_probs=41.9
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCeEE-EEEcCCcEEEecEEEEecCCCCcc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~-v~~~dG~~~~adlvVGADG~~S~v 57 (475)
|.+.|.+.+. ..+++.+++|++++.++++|+ |.+++|+ +++|.||-|-|.+|.-
T Consensus 149 l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 149 LIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred hhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccccccee
Confidence 4445555443 247999999999999999998 9999997 9999999999998754
No 87
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=95.32 E-value=0.42 Score=47.86 Aligned_cols=42 Identities=29% Similarity=0.517 Sum_probs=36.7
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
..++.+++|++++.++++++|+.++| ++++|.||.|+|..|.
T Consensus 164 v~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 164 AELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred CEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 47888999999998888888888777 7999999999999864
No 88
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=95.28 E-value=0.31 Score=50.95 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=45.6
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCe-EEEEEcCCcEEEecEEEEecCCCCcccccc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~-v~v~~~dG~~~~adlvVGADG~~S~vR~~l 61 (475)
|.+.|.+.+.. .+|+++++|++|..++++ ..|++.+|+++++|.||.|=|....+++.+
T Consensus 231 l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 231 IAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhC
Confidence 45566666543 489999999999876554 457788898999999999888888887665
No 89
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=95.19 E-value=0.35 Score=49.10 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=38.8
Q ss_pred HHhhccC--CCeEEcCcEEEEEEee-CCeE-EEEEcCCcEEEec-EEEEecCCCCcccccc
Q 011888 6 ILAKAVG--DEIILNESNVIDFKDH-GDKV-SVVLENGQCYAGD-LLIGADGIWSKVRKNL 61 (475)
Q Consensus 6 ~L~~~~~--~~~i~~~~~v~~v~~~-~~~v-~v~~~dG~~~~ad-lvVGADG~~S~vR~~l 61 (475)
.|.+.+. ..+++.+++|++++.. ++.+ .|+..+| +++++ +||+|+|..|.+++.+
T Consensus 188 ~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~ 247 (407)
T TIGR01373 188 GYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMA 247 (407)
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHc
Confidence 3444443 2478889999999754 3444 4666677 57877 6789999888888765
No 90
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=94.95 E-value=0.68 Score=48.52 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=44.3
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCe-EEEEEcCCcEEEecEEEEecCCCCcccccc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~-v~v~~~dG~~~~adlvVGADG~~S~vR~~l 61 (475)
|-+.|.+.+.. .+|+++++|++|..++++ +.|++++|++++||.||.|=+....+.+.+
T Consensus 221 l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 221 LVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc
Confidence 44556665543 479999999999877765 568888998999999998877766665544
No 91
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.82 E-value=0.91 Score=46.18 Aligned_cols=52 Identities=19% Similarity=0.142 Sum_probs=38.5
Q ss_pred HHHHhhccC--CCeEEcCcEEEEEEeeCCeEE-EEEcCCcEEEecEEEEecCCCCc
Q 011888 4 QQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 4 ~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~-v~~~dG~~~~adlvVGADG~~S~ 56 (475)
.+.|.+.+. ..+++.+++|++++.+++++. |+..+ .++++|.||-|.|.+|.
T Consensus 204 ~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~-~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 204 TQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGG-GVITADAYVVALGSYST 258 (416)
T ss_pred HHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCC-cEEeCCEEEECCCcchH
Confidence 344554443 247889999999988777764 55544 47999999999999984
No 92
>PLN02612 phytoene desaturase
Probab=94.09 E-value=0.93 Score=48.28 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=39.1
Q ss_pred HHHhhccC--CCeEEcCcEEEEEEeeCCe--EEEEEcCCcEEEecEEEEecCCCCccccc
Q 011888 5 QILAKAVG--DEIILNESNVIDFKDHGDK--VSVVLENGQCYAGDLLIGADGIWSKVRKN 60 (475)
Q Consensus 5 ~~L~~~~~--~~~i~~~~~v~~v~~~~~~--v~v~~~dG~~~~adlvVGADG~~S~vR~~ 60 (475)
+.|.+.+. ..+|+++++|++|+.++++ +.+++.+|+++++|.||-|-.. ...++.
T Consensus 312 ~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~-~~l~~L 370 (567)
T PLN02612 312 MPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV-DILKLL 370 (567)
T ss_pred HHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH-HHHHHh
Confidence 34444432 3479999999999986555 3477788999999999999764 334433
No 93
>PLN02568 polyamine oxidase
Probab=93.85 E-value=0.17 Score=53.30 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=44.8
Q ss_pred hHHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecC
Q 011888 2 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADG 52 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG 52 (475)
.|.+.|.+.++...|+++++|+.|+.++++|+|++++|++++||.||.|=-
T Consensus 243 ~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvP 293 (539)
T PLN02568 243 SVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVS 293 (539)
T ss_pred HHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCC
Confidence 467788888876679999999999999999999999999999999998743
No 94
>PRK07233 hypothetical protein; Provisional
Probab=93.17 E-value=2.9 Score=42.55 Aligned_cols=53 Identities=23% Similarity=0.077 Sum_probs=41.0
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCC
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 55 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S 55 (475)
|-+.|.+.+.. ..|+++++|++|+.+++++++...+|+++++|.||-|=..+.
T Consensus 200 l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~ 254 (434)
T PRK07233 200 LIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPI 254 (434)
T ss_pred HHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHH
Confidence 45566666543 379999999999988887776667788999999998877653
No 95
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=92.97 E-value=2.3 Score=43.07 Aligned_cols=49 Identities=8% Similarity=0.085 Sum_probs=37.1
Q ss_pred HhhccC--CCeEEcCcEEEEEEeeCCeEEEEE-cCCcEEEecEEEEecCCCC
Q 011888 7 LAKAVG--DEIILNESNVIDFKDHGDKVSVVL-ENGQCYAGDLLIGADGIWS 55 (475)
Q Consensus 7 L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~-~dG~~~~adlvVGADG~~S 55 (475)
|.+.+. ...|+++++|++|+.++++|++.. .+|+++.||.||.|--...
T Consensus 203 l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 203 ARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHH
Confidence 444442 347999999999999888876655 3778899999999866543
No 96
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=92.75 E-value=0.27 Score=49.69 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=44.2
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc-ccccc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK-VRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~-vR~~l 61 (475)
|.+.|.+.+.. .+++++++|++++.+++++.|...+| +++||.||.|+|.+|. +.+.+
T Consensus 151 l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~ 211 (393)
T PRK11728 151 VAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMA 211 (393)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHh
Confidence 44556555543 37889999999988888888877776 7999999999999984 44443
No 97
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.44 E-value=3.5 Score=43.22 Aligned_cols=48 Identities=19% Similarity=0.336 Sum_probs=38.1
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCC----cEEEecEEEEecCCCCc-ccccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENG----QCYAGDLLIGADGIWSK-VRKNL 61 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG----~~~~adlvVGADG~~S~-vR~~l 61 (475)
..++.+++|+++..+++.+.|++.++ .+++|++||.|.|.+|. +.+.+
T Consensus 170 a~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~ 222 (502)
T PRK13369 170 ATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRV 222 (502)
T ss_pred CEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhc
Confidence 47889999999998877777777664 36999999999999884 44434
No 98
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=92.33 E-value=2.4 Score=44.30 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=36.1
Q ss_pred hHHHHHhhccC--CCeEEcCcEEEEEEeeCCeE-EEEEcCC-----cEEEecEEEEecCC
Q 011888 2 TLQQILAKAVG--DEIILNESNVIDFKDHGDKV-SVVLENG-----QCYAGDLLIGADGI 53 (475)
Q Consensus 2 ~L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v-~v~~~dG-----~~~~adlvVGADG~ 53 (475)
.|-+.|.+.+. ..+|+++++|++|..+++++ .+.+.+| +++.||.||-+=..
T Consensus 233 ~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 233 TLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 35566666664 34799999999999877643 3444444 57889988876444
No 99
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=91.99 E-value=0.29 Score=44.23 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=33.9
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRK 59 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~ 59 (475)
.++++++|++++.++++.+|+++++++++|+.||-|=|..|.-+.
T Consensus 98 ~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~ 142 (203)
T PF13738_consen 98 EIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRI 142 (203)
T ss_dssp GEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB--
T ss_pred ccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCc
Confidence 489999999999999999999999989999999999998777543
No 100
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=91.94 E-value=0.47 Score=51.22 Aligned_cols=98 Identities=23% Similarity=0.385 Sum_probs=70.6
Q ss_pred CCcEEEEecCCCCccc--ccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEE-CCeEEEEEcCCccce
Q 011888 338 NGEWFLVPSGSENVVS--QPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK-DGAFYLIDLQSEHGT 414 (475)
Q Consensus 338 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~-~~~~~i~D~~S~nGt 414 (475)
+...+++........+ ..+++. .. .+||-....+ |++..-.|-++||+|..+ ++++++.-+.+. -+
T Consensus 443 dDK~ylvnlnadP~lnellvyyl~--~~---tlig~~~~~~-----i~l~glgi~p~h~vidI~~dg~l~~~p~~~~-R~ 511 (1714)
T KOG0241|consen 443 DDKCYLVNLNADPALNELLVYYLK--DH---TLIGLFKSQD-----IQLSGLGIQPKHCVIDIESDGELRLTPLLNA-RS 511 (1714)
T ss_pred ccceEEEeccCCccHHHHHHHhhc--Cc---eeeccccCcc-----eeeecCcccCccceeeeccCCcEEecccccc-ee
Confidence 4456777665544333 223332 33 7888666665 999999999999999887 666888887555 89
Q ss_pred eeccCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEEe
Q 011888 415 YVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI 455 (475)
Q Consensus 415 ~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~~ 455 (475)
||||. .+. .+..|.+||.|..|..+ .|++-..
T Consensus 512 ~VNGs-----~v~--~~t~L~~GdRiLwGnnH--FFrvN~P 543 (1714)
T KOG0241|consen 512 CVNGS-----LVC--STTQLWHGDRILWGNNH--FFRVNLP 543 (1714)
T ss_pred eecCc-----eec--cccccccCceEEecccc--eEEecCc
Confidence 99998 665 46899999999999983 4555443
No 101
>PLN02676 polyamine oxidase
Probab=91.74 E-value=0.4 Score=50.02 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=39.5
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
..|+++++|++|+.++++|+|++++|++++||.||.|...+.--
T Consensus 245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk 288 (487)
T PLN02676 245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQ 288 (487)
T ss_pred CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhc
Confidence 46999999999999999999999999999999999999865543
No 102
>PLN02576 protoporphyrinogen oxidase
Probab=91.54 E-value=6.2 Score=41.17 Aligned_cols=49 Identities=18% Similarity=0.320 Sum_probs=36.5
Q ss_pred HHHHHhhccCCCeEEcCcEEEEEEeeCCe-EEEEEc--CCc-EEEecEEEEec
Q 011888 3 LQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLE--NGQ-CYAGDLLIGAD 51 (475)
Q Consensus 3 L~~~L~~~~~~~~i~~~~~v~~v~~~~~~-v~v~~~--dG~-~~~adlvVGAD 51 (475)
|-+.|.+.++...|+++++|+.|+.++++ +.|++. +|+ ++.||.||-|=
T Consensus 241 L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~ 293 (496)
T PLN02576 241 LPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTA 293 (496)
T ss_pred HHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECC
Confidence 45566666653569999999999988776 666554 453 69999999874
No 103
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=90.68 E-value=0.6 Score=46.26 Aligned_cols=57 Identities=21% Similarity=0.145 Sum_probs=49.3
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
++.++|+.++.+ .+++.+++|.+++.++.+..+.+.+|++++||-||-|=|..|.=+
T Consensus 112 ~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P~ 170 (408)
T COG2081 112 PIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPK 170 (408)
T ss_pred HHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCCC
Confidence 567788888765 379999999999998888999999999999999999999888644
No 104
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=90.47 E-value=0.44 Score=45.12 Aligned_cols=59 Identities=24% Similarity=0.165 Sum_probs=42.0
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCC-eE---EEEE----c-----CCcEEEecEEEEecCCCCcccccc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGD-KV---SVVL----E-----NGQCYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~-~v---~v~~----~-----dG~~~~adlvVGADG~~S~vR~~l 61 (475)
|...|.+.+.. ..++++++|+++..+++ .+ .+.. . +..+++|++||.|+|.+|.+.+.+
T Consensus 106 l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 106 AAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred HHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence 45556655433 47899999999986555 33 2221 1 224799999999999999999888
No 105
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=89.84 E-value=8.7 Score=40.33 Aligned_cols=43 Identities=28% Similarity=0.460 Sum_probs=35.4
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcC---Cc--EEEecEEEEecCCCCc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLEN---GQ--CYAGDLLIGADGIWSK 56 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~d---G~--~~~adlvVGADG~~S~ 56 (475)
..++.+++|+++..+++.+.|++.+ |+ +++|+.||.|.|.+|.
T Consensus 170 a~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 170 AEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred CEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 4788999999998877777777654 53 7899999999999873
No 106
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=89.48 E-value=0.82 Score=45.92 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=38.2
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
..+++++++++++.+++++.+++.+|+++.+|+||.|.|..+..
T Consensus 198 V~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 198 VHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred CEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence 36888999999998777788889999999999999999987643
No 107
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=89.03 E-value=0.77 Score=46.37 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=37.6
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
.|+++++|+.|+.++++|+|++.||++++||.||-|=......+
T Consensus 225 ~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 225 EIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN 268 (450)
T ss_dssp GEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred eeecCCcceeccccccccccccccceEEecceeeecCchhhhhh
Confidence 79999999999999999999999999999999988876655554
No 108
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=88.81 E-value=1 Score=45.74 Aligned_cols=53 Identities=26% Similarity=0.276 Sum_probs=41.0
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
+.+.|.+.+.. ..++++++|++++.+++.+.+++ +++++.+|.||.|.|.+|.
T Consensus 107 v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s~ 161 (400)
T TIGR00275 107 VLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLSY 161 (400)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCccc
Confidence 44555555532 37899999999988777777776 5668999999999999983
No 109
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=87.98 E-value=2.2 Score=36.97 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=33.8
Q ss_pred EEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCC
Q 011888 16 ILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI 53 (475)
Q Consensus 16 i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~ 53 (475)
.+...+|+++...+++..|.++||..+.+|.||-|-|-
T Consensus 118 ~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 118 RHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred EEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 34567999999999999999999999999999999884
No 110
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=87.77 E-value=1.3 Score=44.73 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=33.3
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEe
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGA 50 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGA 50 (475)
.|.++.+|..|.+++++|+|++.+..++.+|++|.+
T Consensus 222 ~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~t 257 (450)
T COG1231 222 RILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVT 257 (450)
T ss_pred eEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEe
Confidence 588899999999999999999999778999999987
No 111
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=87.70 E-value=1.4 Score=45.54 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=44.2
Q ss_pred HHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccc
Q 011888 4 QQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRK 59 (475)
Q Consensus 4 ~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~ 59 (475)
...|.+.+.. ..++.++++++++.+++++.+++.+|+++.+|.||-|.|....+..
T Consensus 219 ~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 276 (461)
T PRK05249 219 SDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDG 276 (461)
T ss_pred HHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccC
Confidence 3444444432 3788999999998777788888888889999999999999877653
No 112
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=87.59 E-value=0.97 Score=42.72 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=42.0
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCC--eEE-EEEc-----------CCcEEEecEEEEecCCCCcccccc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGD--KVS-VVLE-----------NGQCYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~--~v~-v~~~-----------dG~~~~adlvVGADG~~S~vR~~l 61 (475)
+.+.|++.+.+ .+++++++++++..+++ .|. |... |..+++|++||.|+|..|.+.+.+
T Consensus 102 l~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 102 FISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 45556555432 47899999999987666 222 2221 224799999999999999999887
No 113
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=86.85 E-value=1.3 Score=46.20 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=40.2
Q ss_pred HHHHHhhccCC---CeEEcCcEEEEEEeeCCe-EEEEEc---CCc--EEEecEEEEecCCC-Ccccccc
Q 011888 3 LQQILAKAVGD---EIILNESNVIDFKDHGDK-VSVVLE---NGQ--CYAGDLLIGADGIW-SKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~-v~v~~~---dG~--~~~adlvVGADG~~-S~vR~~l 61 (475)
|.+.|.+.+.. .+++++++|++++.++++ +.+++. +|+ +++|++||.|.|.+ +.+++.+
T Consensus 185 l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~ 253 (494)
T PRK05257 185 LTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKS 253 (494)
T ss_pred HHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHc
Confidence 45566665543 378999999999986554 666653 353 68999887666655 4566655
No 114
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=86.15 E-value=1.8 Score=45.65 Aligned_cols=53 Identities=23% Similarity=0.233 Sum_probs=41.9
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCC
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 55 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S 55 (475)
|.+.|.+.+.. ..++.+++|+++..+++...|++.+|++++++.||.|+|.++
T Consensus 268 l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 268 LAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 34445544432 368889999999987778888888888999999999999976
No 115
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=85.70 E-value=1.7 Score=44.08 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=43.3
Q ss_pred HHHHhhccC--CCeEEcCcEEEEEEeeCCe-EEEEEcCCcE-EEecEEEEecCCCCc-ccccc
Q 011888 4 QQILAKAVG--DEIILNESNVIDFKDHGDK-VSVVLENGQC-YAGDLLIGADGIWSK-VRKNL 61 (475)
Q Consensus 4 ~~~L~~~~~--~~~i~~~~~v~~v~~~~~~-v~v~~~dG~~-~~adlvVGADG~~S~-vR~~l 61 (475)
-..|.+.+. ...++++++|++++..+++ ..+.+.+|++ ++|++||-|=|.+|- +-+.+
T Consensus 156 t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~ 218 (429)
T COG0579 156 TRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMA 218 (429)
T ss_pred HHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHh
Confidence 344555543 3489999999999998885 5566778876 999999999998875 44433
No 116
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=85.53 E-value=1.4 Score=44.70 Aligned_cols=55 Identities=24% Similarity=0.209 Sum_probs=38.1
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCe-EEEEEcCCcEEEecEEEEecCCCCc
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~-v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
++.++|++.+.. .+++++++|.+++.++++ ..|.++++.++.||-||-|-|..|.
T Consensus 110 ~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 110 SVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSY 167 (409)
T ss_dssp HHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred HHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCc
Confidence 455677776653 479999999999988887 7788877889999999999998885
No 117
>PLN02268 probable polyamine oxidase
Probab=85.51 E-value=2 Score=43.99 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=34.9
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecC
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADG 52 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG 52 (475)
.|+++++|++|+.++++|+|++.+|+++.||.||.|--
T Consensus 212 ~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P 249 (435)
T PLN02268 212 DIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVP 249 (435)
T ss_pred ceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecC
Confidence 59999999999998899999999998999999999964
No 118
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=83.81 E-value=29 Score=36.11 Aligned_cols=33 Identities=18% Similarity=0.006 Sum_probs=27.7
Q ss_pred CCcEEEEcccccccCCccccchhhhHHHHHHHHHHH
Q 011888 173 RGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 208 (475)
Q Consensus 173 ~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L 208 (475)
..+++|+||--..-.| .+|+-|++.+...|+.|
T Consensus 441 ~~~l~lAGD~t~~~~p---as~egAv~sG~~aA~~i 473 (474)
T TIGR02732 441 ISNFFLAGSYTQQDYI---DSMEGATLSGRQAAAAI 473 (474)
T ss_pred CCCeEEeccccccCch---HHHhHHHHHHHHHHHHh
Confidence 3699999999888777 38999999998888765
No 119
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=83.72 E-value=1.4 Score=33.14 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=23.3
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCC
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENG 39 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG 39 (475)
..+++++++++++.++++++|+++||
T Consensus 55 V~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 55 VEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp EEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 37999999999999988888999887
No 120
>PRK06116 glutathione reductase; Validated
Probab=83.18 E-value=3 Score=42.95 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=41.4
Q ss_pred HHHhhccCC--CeEEcCcEEEEEEeeCCe-EEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 5 QILAKAVGD--EIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 5 ~~L~~~~~~--~~i~~~~~v~~v~~~~~~-v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
+.|.+.+.. ..++++++|++++.++++ +.+.+.+|+++.+|.||-|-|....+.
T Consensus 212 ~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 212 ETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred HHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence 344444432 378999999999876555 788888999999999999999766554
No 121
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=81.39 E-value=25 Score=38.07 Aligned_cols=59 Identities=20% Similarity=0.292 Sum_probs=39.4
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeC--CeE-EEEE---cCCc--EEEecEEEEecCCCCc-ccccc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHG--DKV-SVVL---ENGQ--CYAGDLLIGADGIWSK-VRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~--~~v-~v~~---~dG~--~~~adlvVGADG~~S~-vR~~l 61 (475)
|...|.+.+.. ..++.+++|+++..++ +++ .|++ .+|+ +++++.||-|.|.+|. +++.+
T Consensus 234 l~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~ 303 (627)
T PLN02464 234 LNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMA 303 (627)
T ss_pred HHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhc
Confidence 33445454432 3788899999998763 433 2343 2344 6899999999999985 66655
No 122
>PRK07846 mycothione reductase; Reviewed
Probab=81.35 E-value=4.7 Score=41.61 Aligned_cols=45 Identities=22% Similarity=0.280 Sum_probs=38.7
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
..++.++++++++.+++++.+.+.+|+++.+|.||.|-|....+-
T Consensus 221 v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 221 WDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD 265 (451)
T ss_pred eEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcc
Confidence 368899999999877778888888899999999999999877653
No 123
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=80.86 E-value=4.7 Score=43.13 Aligned_cols=56 Identities=16% Similarity=0.133 Sum_probs=41.2
Q ss_pred HHHHHhhccCC---CeEEcCcEEEEEEeeCCeEE----EEEcCCc--EEEecEEEEecCCCCccc
Q 011888 3 LQQILAKAVGD---EIILNESNVIDFKDHGDKVS----VVLENGQ--CYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 3 L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~----v~~~dG~--~~~adlvVGADG~~S~vR 58 (475)
|.+.|.+.+.. ..++.++.++++..+++.|. +...+|+ .++|+.||.|+|..|.+-
T Consensus 135 i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 135 MLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred HHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 55666665532 36888999999987766543 2345674 689999999999999764
No 124
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=80.63 E-value=3.6 Score=42.97 Aligned_cols=46 Identities=9% Similarity=0.127 Sum_probs=36.7
Q ss_pred eEEcCcEEEEEEee-CCeEEEEEcCCcEEEecEEEEecCCCCc-ccccc
Q 011888 15 IILNESNVIDFKDH-GDKVSVVLENGQCYAGDLLIGADGIWSK-VRKNL 61 (475)
Q Consensus 15 ~i~~~~~v~~v~~~-~~~v~v~~~dG~~~~adlvVGADG~~S~-vR~~l 61 (475)
.++++++|++++.+ ++.+.|+..+| +++||.||-|=|.+|. +-+.+
T Consensus 233 ~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~ 280 (497)
T PTZ00383 233 SINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKM 280 (497)
T ss_pred EEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHh
Confidence 58899999999987 44567877777 6999999999999985 44443
No 125
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=80.42 E-value=3.9 Score=41.37 Aligned_cols=43 Identities=28% Similarity=0.389 Sum_probs=36.3
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
..+++++++++++. ++.+.+++.+|+++.+|+||.|-|.....
T Consensus 201 V~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 201 VRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISAND 243 (396)
T ss_pred CEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChhh
Confidence 36889999999976 55677888999999999999999986653
No 126
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=80.19 E-value=4.2 Score=38.94 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=34.6
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCC
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 55 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S 55 (475)
.+++ ++|++++.+++.++|++.+|+++++|.||.|.|...
T Consensus 73 ~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 73 EIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred eEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence 5666 899999988888888888888999999999999864
No 127
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=79.37 E-value=2.9 Score=43.55 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=40.9
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeC-CeEEEEEc---CC--cEEEecEE-EEecCCCCcccccc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHG-DKVSVVLE---NG--QCYAGDLL-IGADGIWSKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~-~~v~v~~~---dG--~~~~adlv-VGADG~~S~vR~~l 61 (475)
|.+.|.+.+. ...++++++|++++.++ +++.++.. +| .+++|++| ++|+|-.+.+++.+
T Consensus 180 l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~ 247 (483)
T TIGR01320 180 LTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKS 247 (483)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHc
Confidence 4455666554 34799999999998865 45666543 34 26899987 66666677788776
No 128
>PLN02487 zeta-carotene desaturase
Probab=79.00 E-value=69 Score=34.16 Aligned_cols=35 Identities=20% Similarity=0.015 Sum_probs=30.7
Q ss_pred CcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHH
Q 011888 174 GRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKA 211 (475)
Q Consensus 174 grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~ 211 (475)
.+++|+||--..-.|. +|+-|++.+...|+.|.+.
T Consensus 518 ~nl~LAGD~t~~~yPa---t~EgAv~SG~~AA~~i~~~ 552 (569)
T PLN02487 518 SNFFLAGSYTKQDYID---SMEGATLSGRQAAAYICEA 552 (569)
T ss_pred CCEEEeCcccccCCcc---hHHHHHHHHHHHHHHHHHH
Confidence 6999999999999883 9999999999999887664
No 129
>PRK09897 hypothetical protein; Provisional
Probab=78.95 E-value=5.6 Score=41.92 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=34.0
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcC-CcEEEecEEEEecCC
Q 011888 15 IILNESNVIDFKDHGDKVSVVLEN-GQCYAGDLLIGADGI 53 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~d-G~~~~adlvVGADG~ 53 (475)
.++.+++|++++.+++++.|++.+ |..+.+|.||.|.|-
T Consensus 125 ~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 125 AVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred EEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 567789999999988899998866 468999999999995
No 130
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=78.61 E-value=4.9 Score=42.26 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=36.6
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCC
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 55 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S 55 (475)
..++.+++|++++.+++.+.+++++|+++++|.||.|.|++.
T Consensus 282 v~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 282 IDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred CeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 368889999999887777888888898999999999999863
No 131
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=78.51 E-value=5.9 Score=41.10 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=39.1
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
..++.++++++++.+++++.+.+.+|+++.+|.||-|-|......
T Consensus 233 V~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 233 MTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred cEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 368899999999877778888888999999999999999877665
No 132
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=77.62 E-value=6.1 Score=40.80 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=39.1
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCC--cEEEecEEEEecCCCCcccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENG--QCYAGDLLIGADGIWSKVRK 59 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG--~~~~adlvVGADG~~S~vR~ 59 (475)
..++.+++|++++.+++++.+.+.+| +++.+|.||-|-|..+.+..
T Consensus 226 i~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~ 273 (461)
T TIGR01350 226 VKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEG 273 (461)
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCC
Confidence 36899999999988788888887777 57999999999999887653
No 133
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=77.26 E-value=7.6 Score=40.11 Aligned_cols=44 Identities=27% Similarity=0.324 Sum_probs=37.9
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
..++.+++|++++.+++++.+++.+|+++.+|.||-|-|.....
T Consensus 224 I~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 224 WDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred CEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 46889999999988777888888888899999999999977654
No 134
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=77.20 E-value=5.6 Score=40.39 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=42.1
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEE-EEcCC--cEEEecEEEEecCCC-Cc
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSV-VLENG--QCYAGDLLIGADGIW-SK 56 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v-~~~dG--~~~~adlvVGADG~~-S~ 56 (475)
.|.+.|.+.+.. .+++.+++|+++..++++++. ...++ .+++||-+|-|-|++ |.
T Consensus 264 RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 264 RLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred HHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCH
Confidence 466677776543 378889999999988887764 43555 489999999999999 75
No 135
>PLN02507 glutathione reductase
Probab=76.03 E-value=7.6 Score=40.68 Aligned_cols=45 Identities=13% Similarity=0.290 Sum_probs=39.1
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
..++.+++|++++.+++++.+.+.+|+++.+|+||-|=|....+.
T Consensus 259 I~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 259 INLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK 303 (499)
T ss_pred CEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence 378999999999877778888888888999999999999877664
No 136
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=75.94 E-value=6.3 Score=42.01 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=33.0
Q ss_pred eEEcCcEEEEEEeeCCeEE-EEEcCCcEEEecEEEEecCCCCc
Q 011888 15 IILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~-v~~~dG~~~~adlvVGADG~~S~ 56 (475)
.+ +..+|+++..+++.|. |.+.+|..+.|+.||.|+|..+.
T Consensus 117 ~I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 117 DL-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFLR 158 (618)
T ss_pred EE-EEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcchh
Confidence 44 4677888887777664 77889999999999999998663
No 137
>PRK07804 L-aspartate oxidase; Provisional
Probab=75.88 E-value=5.6 Score=42.12 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=40.6
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCC----eEEEE-----EcCC-cEEEecEEEEecCCCCcccc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGD----KVSVV-----LENG-QCYAGDLLIGADGIWSKVRK 59 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~----~v~v~-----~~dG-~~~~adlvVGADG~~S~vR~ 59 (475)
+.+.|.+.+.. ..++.++.++++..+++ +|.+. ..++ ..+.|+.||.|+|..|.++.
T Consensus 146 i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~~ 214 (541)
T PRK07804 146 VQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLYA 214 (541)
T ss_pred HHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCCC
Confidence 55667666543 47889999999987654 34443 1233 36899999999999998764
No 138
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=75.69 E-value=96 Score=31.44 Aligned_cols=74 Identities=16% Similarity=0.054 Sum_probs=52.1
Q ss_pred ChHHHHHHHhCCccceeeccccc--CCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhcc
Q 011888 142 CDNVVDLILATDEEAILRRDIYD--RTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKS 215 (475)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~ 215 (475)
+|.+.+.++.......-.+.+.. ....+..+-.+=+|||=+|..|+---=-|.-.||.++...|+.+-+++++.
T Consensus 350 hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~ 425 (621)
T KOG2415|consen 350 HPSISKVLEGGKRIAYGARALNEGGFQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGL 425 (621)
T ss_pred CcchhhhhcCcceeeehhhhhccCCcccCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcC
Confidence 56666666554432222222221 123345566777899999999998888999999999999999999988764
No 139
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=75.20 E-value=7.4 Score=40.23 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=38.0
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCC---cEEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENG---QCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG---~~~~adlvVGADG~~S~vR 58 (475)
..++.+++|++++.+++++.+.+.+| +++.+|.||-|=|....+.
T Consensus 228 V~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 228 IKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence 47899999999998777888888776 6799999999999876654
No 140
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=75.07 E-value=7.9 Score=40.40 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=40.3
Q ss_pred HHHHHhhccC---CCeEEcCcEEEEEEee-CCeEEEEE---cCCc--EEEecEEEEecCCCC-cccccc
Q 011888 3 LQQILAKAVG---DEIILNESNVIDFKDH-GDKVSVVL---ENGQ--CYAGDLLIGADGIWS-KVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~---~~~i~~~~~v~~v~~~-~~~v~v~~---~dG~--~~~adlvVGADG~~S-~vR~~l 61 (475)
|.+.|.+.+. ..+++++++|++++.+ ++++++++ .+|+ +++||+||-|=|.+| .+.+.+
T Consensus 186 L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~ 254 (497)
T PRK13339 186 LTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKS 254 (497)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHc
Confidence 4455655552 2478999999999877 66677763 3443 689999876666665 566555
No 141
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=74.84 E-value=8.1 Score=39.74 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=38.2
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCe--EEEEEcCCcEEEecEEEEecCC
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDK--VSVVLENGQCYAGDLLIGADGI 53 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~--v~v~~~dG~~~~adlvVGADG~ 53 (475)
|-+.|.+.+. .++++++++|++|..++++ +.|++++|++++|+.||+....
T Consensus 234 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 234 LPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSY 288 (443)
T ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccc
Confidence 4455555442 3589999999999877543 5688899999999999985444
No 142
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=73.99 E-value=6 Score=43.68 Aligned_cols=48 Identities=27% Similarity=0.320 Sum_probs=38.1
Q ss_pred HHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCC
Q 011888 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW 54 (475)
Q Consensus 3 L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~ 54 (475)
|-+.|.+.++ |++++.|+.|..++++|.| ..+|++++||.||-+==..
T Consensus 439 Li~aLa~~L~---I~ln~~V~~I~~~~dgV~V-~~~G~~~~AD~VIvTvPl~ 486 (808)
T PLN02328 439 FVRELAKDLP---IFYERTVESIRYGVDGVIV-YAGGQEFHGDMVLCTVPLG 486 (808)
T ss_pred HHHHHHhhCC---cccCCeeEEEEEcCCeEEE-EeCCeEEEcCEEEECCCHH
Confidence 4556666553 8999999999999999988 5678899999999875543
No 143
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=73.61 E-value=7.5 Score=40.58 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=42.8
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCeEE-EEEcC-C--cEEEecEEEEecCCCCccccc
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDKVS-VVLEN-G--QCYAGDLLIGADGIWSKVRKN 60 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~-v~~~d-G--~~~~adlvVGADG~~S~vR~~ 60 (475)
.|.+.|.+.+.+ ..++++++++++..+++.|. |...+ + ..++++.||.|+|..|.+...
T Consensus 129 ~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~~~~ 194 (488)
T TIGR00551 129 EVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKLYQY 194 (488)
T ss_pred HHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCCCCC
Confidence 355667776543 37899999999987666554 44433 3 368999999999999987653
No 144
>PLN02976 amine oxidase
Probab=70.70 E-value=11 Score=44.30 Aligned_cols=45 Identities=27% Similarity=0.277 Sum_probs=35.9
Q ss_pred HHHHHhhccCCCeEEcCcEEEEEEee----------CCeEEEEEcCCcEEEecEEEEe
Q 011888 3 LQQILAKAVGDEIILNESNVIDFKDH----------GDKVSVVLENGQCYAGDLLIGA 50 (475)
Q Consensus 3 L~~~L~~~~~~~~i~~~~~v~~v~~~----------~~~v~v~~~dG~~~~adlvVGA 50 (475)
|-+.|.+.+ .|++++.|+.|... +++|.|++.+|++++||.||-+
T Consensus 938 LIeALAe~L---~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVT 992 (1713)
T PLN02976 938 VVESLAEGL---DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLIT 992 (1713)
T ss_pred HHHHHHhhC---CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEe
Confidence 444555544 39999999999874 4679999999999999999976
No 145
>PLN02529 lysine-specific histone demethylase 1
Probab=70.60 E-value=9.9 Score=41.69 Aligned_cols=45 Identities=24% Similarity=0.317 Sum_probs=34.6
Q ss_pred HHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEec
Q 011888 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGAD 51 (475)
Q Consensus 3 L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGAD 51 (475)
|-+.|.+.+ .|+++++|+.|+.++++|+|+. ++++++||.||-|=
T Consensus 359 Li~aLA~~L---~IrLnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVTV 403 (738)
T PLN02529 359 LINALCEGV---PIFYGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCTV 403 (738)
T ss_pred HHHHHHhcC---CEEcCCceeEEEEcCCeEEEEE-CCEEEEcCEEEECC
Confidence 334444433 4999999999999999999874 55689999999864
No 146
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=70.45 E-value=11 Score=38.68 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=37.9
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
..++.++++++++.+++++.+++.+|+++.+|.||-|=|....+.
T Consensus 222 V~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 222 IRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTK 266 (446)
T ss_pred CEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence 378899999999877777888888888999999999999765543
No 147
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=69.95 E-value=9.2 Score=39.18 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=39.2
Q ss_pred hHHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEe
Q 011888 2 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGA 50 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGA 50 (475)
.|.++|.+.+... |+++++|+.+..+..+..+.+.+|.++.+|-||-+
T Consensus 216 ~l~~al~~~l~~~-i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t 263 (444)
T COG1232 216 SLIEALAEKLEAK-IRTGTEVTKIDKKGAGKTIVDVGGEKITADGVIST 263 (444)
T ss_pred HHHHHHHHHhhhc-eeecceeeEEEEcCCccEEEEcCCceEEcceEEEc
Confidence 4667777777766 99999999999988788888899988777777754
No 148
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=69.52 E-value=1.1e+02 Score=30.26 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=40.1
Q ss_pred HHHHHhhccCC---CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccc
Q 011888 3 LQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRK 59 (475)
Q Consensus 3 L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~ 59 (475)
+.+.|.+.+.. ..+..++.++.++.+...+.|...+|+ ++++-||-|-|.+|..--
T Consensus 158 ~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~ 216 (387)
T COG0665 158 LTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELA 216 (387)
T ss_pred HHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHH
Confidence 34455554433 356778999998874345677777776 999999999999987543
No 149
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=68.83 E-value=10 Score=39.20 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=38.3
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
|.+.|.+.+.. ..++.+++|++++. ++.+.|+..+| +++||.||-|-|.+|.
T Consensus 185 l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 185 LVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 44556655532 47899999999975 44566777666 6899999999888864
No 150
>PLN03000 amine oxidase
Probab=68.24 E-value=11 Score=41.82 Aligned_cols=45 Identities=33% Similarity=0.446 Sum_probs=35.9
Q ss_pred HHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEec
Q 011888 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGAD 51 (475)
Q Consensus 3 L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGAD 51 (475)
|-+.|.+.++ |++++.|+.|+.++++|+|+.. +++++||.||-|=
T Consensus 383 LieaLa~~L~---I~Ln~~Vt~I~~~~dgV~V~~~-~~~~~AD~VIvTV 427 (881)
T PLN03000 383 LVQALAENVP---ILYEKTVQTIRYGSNGVKVIAG-NQVYEGDMVLCTV 427 (881)
T ss_pred HHHHHHhhCC---cccCCcEEEEEECCCeEEEEEC-CcEEEeceEEEcC
Confidence 4455666553 8999999999999999999864 3589999999874
No 151
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=67.83 E-value=16 Score=39.09 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=40.3
Q ss_pred HHHHHhhccC---CCeEEcCcEEEEEEeeCCeEE----EEEcCCc--EEEecEEEEecCCCCcc
Q 011888 3 LQQILAKAVG---DEIILNESNVIDFKDHGDKVS----VVLENGQ--CYAGDLLIGADGIWSKV 57 (475)
Q Consensus 3 L~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~----v~~~dG~--~~~adlvVGADG~~S~v 57 (475)
|.+.|.+.+. ...++.++.++++..+++.|. +...+|+ .+.|+.||.|+|..|.+
T Consensus 134 i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 134 MLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 5566776553 236788999999987766543 2334674 68999999999999965
No 152
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=67.69 E-value=12 Score=39.88 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=40.8
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCeEE-EE---EcCCc--EEEecEEEEecCCCCccccc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VV---LENGQ--CYAGDLLIGADGIWSKVRKN 60 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~-v~---~~dG~--~~~adlvVGADG~~S~vR~~ 60 (475)
+...|.+.+. ...+++++.++++..+++.|. |. ..+|+ .+.|+.||.|+|..|.+...
T Consensus 131 i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~~ 196 (566)
T TIGR01812 131 LLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYKT 196 (566)
T ss_pred HHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCCCC
Confidence 3445555443 247899999999987766543 22 24564 58999999999999987653
No 153
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=64.49 E-value=18 Score=37.52 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=40.6
Q ss_pred HHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEc--CC--cEEEecEEEEecCCCCccc
Q 011888 4 QQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLE--NG--QCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 4 ~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~--dG--~~~~adlvVGADG~~S~vR 58 (475)
...|.+.+.. ..++.+++|++++.+++.+.+++. +| +++.+|.||-|=|....+.
T Consensus 216 ~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 216 SKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred HHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence 3444444432 378999999999877666766665 66 3799999999999877664
No 154
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=64.10 E-value=17 Score=37.71 Aligned_cols=54 Identities=26% Similarity=0.153 Sum_probs=40.5
Q ss_pred HHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCC----cEEEecEEEEecCCCCccc
Q 011888 5 QILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENG----QCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 5 ~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG----~~~~adlvVGADG~~S~vR 58 (475)
..+.+.+.. ..++.+++|+.++.+++++.+.+.++ +++.+|.||-|=|....+.
T Consensus 228 ~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 228 KEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred HHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence 344444432 37899999999998777788877653 4799999999999887754
No 155
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=63.34 E-value=17 Score=37.18 Aligned_cols=55 Identities=20% Similarity=0.058 Sum_probs=38.5
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCC----eEEEEEcCCc--EEEecEEEEecCCCCcc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGD----KVSVVLENGQ--CYAGDLLIGADGIWSKV 57 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~----~v~v~~~dG~--~~~adlvVGADG~~S~v 57 (475)
|.+.|.+.+.. .+++++++|+++..+++ +|.+...+++ .+.++.||-|.|..|.-
T Consensus 132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n 194 (439)
T TIGR01813 132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSN 194 (439)
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCC
Confidence 44556555543 37999999999987643 3444434454 47899999999998873
No 156
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.31 E-value=11 Score=39.24 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=39.1
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCC-eEEEEEcCCcEEEecEEEEecC
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGD-KVSVVLENGQCYAGDLLIGADG 52 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~-~v~v~~~dG~~~~adlvVGADG 52 (475)
.|-++|.+.+.+ .+|+++++|+.|..+++ +++++..+|+.+++|.||.+=.
T Consensus 225 al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~ 278 (487)
T COG1233 225 ALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNAD 278 (487)
T ss_pred HHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCc
Confidence 355667776654 48999999999998776 5788888887888998776533
No 157
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=63.22 E-value=14 Score=37.50 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=36.1
Q ss_pred CeEEcCcEEEEEEeeCCeE-EEEEcCCcEEEecEEEEecCCCC
Q 011888 14 EIILNESNVIDFKDHGDKV-SVVLENGQCYAGDLLIGADGIWS 55 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v-~v~~~dG~~~~adlvVGADG~~S 55 (475)
.+++|+++|.+++..++.+ .|.+++|.++.+|.||-|=|..|
T Consensus 188 ~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 188 GEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred cEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch
Confidence 4799999999999887754 57788999999999999999655
No 158
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=61.18 E-value=6.6 Score=28.39 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=16.0
Q ss_pred cceeeccCCCceeecCCCCcEEeCCCCEEEeCCC
Q 011888 412 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 445 (475)
Q Consensus 412 nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 445 (475)
+..+|||. +.-.....|++||+|.|++.
T Consensus 33 g~V~VNGe------~e~rrg~Kl~~GD~V~~~~~ 60 (65)
T PF13275_consen 33 GEVKVNGE------VETRRGKKLRPGDVVEIDGE 60 (65)
T ss_dssp HHHEETTB----------SS----SSEEEEETTE
T ss_pred CceEECCE------EccccCCcCCCCCEEEECCE
Confidence 45788996 22233568999999999776
No 159
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=61.16 E-value=21 Score=37.28 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=41.3
Q ss_pred HHHHhhccCC--CeEEcCcEEEEEEeeCCe-EEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 4 QQILAKAVGD--EIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 4 ~~~L~~~~~~--~~i~~~~~v~~v~~~~~~-v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
.+.+.+.+.. ..+++++++++++.++++ +.+++.+|+++.+|+||-|=|....+.
T Consensus 234 ~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 234 RKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 3444444432 378999999999866444 677788888999999999999877665
No 160
>PRK11507 ribosome-associated protein; Provisional
Probab=60.79 E-value=12 Score=27.42 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=20.7
Q ss_pred cceeeccCCCceeecCCCCcEEeCCCCEEEeCCC
Q 011888 412 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 445 (475)
Q Consensus 412 nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 445 (475)
+...|||. +.-.....|++||+|.|.+.
T Consensus 37 g~V~VNGe------ve~rRgkKl~~GD~V~~~g~ 64 (70)
T PRK11507 37 GQVKVDGA------VETRKRCKIVAGQTVSFAGH 64 (70)
T ss_pred CceEECCE------EecccCCCCCCCCEEEECCE
Confidence 55788886 22223467999999999987
No 161
>PTZ00052 thioredoxin reductase; Provisional
Probab=59.98 E-value=24 Score=36.96 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=41.1
Q ss_pred HHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 5 QILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 5 ~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
+.+.+.+.. ..++.+++++.++..++.+.+.+.+|+++.+|.||-|=|....+.
T Consensus 226 ~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 226 EKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred HHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 344444432 368899999999876667778888898899999999999876654
No 162
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=59.55 E-value=26 Score=36.13 Aligned_cols=54 Identities=13% Similarity=0.200 Sum_probs=38.6
Q ss_pred HHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCC--cEEEecEEEEecCCCCccc
Q 011888 4 QQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENG--QCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 4 ~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG--~~~~adlvVGADG~~S~vR 58 (475)
.+.|.+.+.. ..++++++++.++.++..+.+.. +| +++.+|+||-|-|....+.
T Consensus 214 ~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~-~g~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 214 AHILREKLENDGVKIFTGAALKGLNSYKKQALFEY-EGSIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred HHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEE-CCceEEEEeCEEEEecCCccCCC
Confidence 3444444432 37899999999987666565543 44 3699999999999888764
No 163
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=59.47 E-value=24 Score=35.45 Aligned_cols=39 Identities=28% Similarity=0.392 Sum_probs=31.0
Q ss_pred eEEcCcEEEEEEeeCCeEE-EEEcCCcEEEecEEEEecCCC
Q 011888 15 IILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIW 54 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~-v~~~dG~~~~adlvVGADG~~ 54 (475)
.| ...+|+++..+++.|. |.+.+|+.+.++.||-|.|..
T Consensus 112 ~i-~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 112 TI-IQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTF 151 (392)
T ss_dssp EE-EES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred EE-EEcccceEEecCCeEEEEEeCCCCEEecCEEEEecccc
Confidence 45 4578999988877754 888899999999999999983
No 164
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=58.91 E-value=13 Score=37.88 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=36.4
Q ss_pred HHHHHhhccCCCe--------EEcCcEEEEEEeeC-CeEEEEEcCCcEEEecEEEEe
Q 011888 3 LQQILAKAVGDEI--------ILNESNVIDFKDHG-DKVSVVLENGQCYAGDLLIGA 50 (475)
Q Consensus 3 L~~~L~~~~~~~~--------i~~~~~v~~v~~~~-~~v~v~~~dG~~~~adlvVGA 50 (475)
+.+.|...+++.. ++++++|..|+..+ +.|.|++.||+.+.||.||..
T Consensus 225 iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvT 281 (498)
T KOG0685|consen 225 ILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVT 281 (498)
T ss_pred HHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEE
Confidence 4455666565543 44559999998764 679999999999999999864
No 165
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=58.52 E-value=37 Score=35.20 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=34.5
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCC--c--EEEecEEEEecCCCCc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENG--Q--CYAGDLLIGADGIWSK 56 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG--~--~~~adlvVGADG~~S~ 56 (475)
.|+++++|++++..+++++|+..++ . +..+|.||.|-|..|.
T Consensus 129 ~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 129 MVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred eEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence 4899999999998888888887643 2 4679999999998764
No 166
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=58.32 E-value=20 Score=39.98 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=36.2
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
..++.+++++++..++....|+++||+++.+|+||-|=|....
T Consensus 197 V~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 197 LTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred CEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 3689999999998665556788999999999999999998644
No 167
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=58.14 E-value=25 Score=36.40 Aligned_cols=55 Identities=25% Similarity=0.238 Sum_probs=39.8
Q ss_pred HHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEc---CC--cEEEecEEEEecCCCCccc
Q 011888 4 QQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLE---NG--QCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 4 ~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~---dG--~~~~adlvVGADG~~S~vR 58 (475)
...|.+.+.. ..++.+++|++++.+++++.+++. +| +++.+|.||-|-|....+.
T Consensus 218 ~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 218 AKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred HHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 3444444432 378999999999877677766653 23 5799999999999886654
No 168
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=57.99 E-value=29 Score=35.83 Aligned_cols=57 Identities=25% Similarity=0.258 Sum_probs=44.9
Q ss_pred HHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCc--EEEecEEEEecCCCCccccc
Q 011888 4 QQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQ--CYAGDLLIGADGIWSKVRKN 60 (475)
Q Consensus 4 ~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~--~~~adlvVGADG~~S~vR~~ 60 (475)
.+.|.+.+.. ..++.+++++.++..++++.+++++|+ ++++|.|+.|=|+.-.+-..
T Consensus 217 ~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~L 277 (454)
T COG1249 217 SKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGL 277 (454)
T ss_pred HHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCC
Confidence 3444444443 368999999999988877999999886 78999999999988777654
No 169
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=57.34 E-value=25 Score=35.22 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=38.5
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCC-cEEEecEEEEecCCCC
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENG-QCYAGDLLIGADGIWS 55 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG-~~~~adlvVGADG~~S 55 (475)
+...+|...+.. ..|+++++|++| ++++..+.+.++ .+++||-||-|=|..|
T Consensus 87 sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 87 PLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 455677776654 479999999999 334466666543 4799999999999876
No 170
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=56.67 E-value=21 Score=26.42 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=22.3
Q ss_pred CccceeeccCCCceeecCCCCcEEeCCCCEEEeCCC
Q 011888 410 SEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 445 (475)
Q Consensus 410 S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 445 (475)
+.+.++|||. ++-.....|++||+|.|.+.
T Consensus 35 ~eg~V~vNGe------~EtRRgkKlr~gd~V~i~~~ 64 (73)
T COG2501 35 AEGEVKVNGE------VETRRGKKLRDGDVVEIPGQ 64 (73)
T ss_pred HCCeEEECCe------eeeccCCEeecCCEEEECCE
Confidence 3457899997 22223468999999999987
No 171
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=55.56 E-value=33 Score=35.15 Aligned_cols=53 Identities=25% Similarity=0.220 Sum_probs=39.3
Q ss_pred HHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 5 QILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 5 ~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
+.|.+.+.. ..+++++++++++.+++++++...++ ++.+|.||-|=|.....-
T Consensus 203 ~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 203 DNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPATA 257 (441)
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCCC
Confidence 344444433 37889999999988777777776555 589999999999877653
No 172
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=55.39 E-value=8.3 Score=41.46 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=33.2
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCC
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 55 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S 55 (475)
.++.++..+.+..++.-..+.|+||+.+.+|+||-|+|++=
T Consensus 203 ~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrP 243 (793)
T COG1251 203 KVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRP 243 (793)
T ss_pred eeecccchhhhhcCcceeeEeecCCCcccceeEEEeccccc
Confidence 57777777777665555679999999999999999999853
No 173
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=55.30 E-value=36 Score=35.28 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=40.3
Q ss_pred HHHhhccCC-CeEEcCcEEEEEEeeCCeEEEEEcCC----cEEEecEEEEecCCCCccc
Q 011888 5 QILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENG----QCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 5 ~~L~~~~~~-~~i~~~~~v~~v~~~~~~v~v~~~dG----~~~~adlvVGADG~~S~vR 58 (475)
+.+.+.+.. ..++.+++++.++.+++++.+++.++ +++.+|.||-|-|....+.
T Consensus 219 ~~~~~~l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 219 KVFTKRIKKQFNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred HHHHHHHhhceEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence 344444432 46889999999987777788877653 3699999999999987765
No 174
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=54.11 E-value=33 Score=35.32 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=39.5
Q ss_pred HHHhhccCC--CeEEcCcEEEEEEeeCCe-EEEEEcCC-cEEEecEEEEecCCCCccc
Q 011888 5 QILAKAVGD--EIILNESNVIDFKDHGDK-VSVVLENG-QCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 5 ~~L~~~~~~--~~i~~~~~v~~v~~~~~~-v~v~~~dG-~~~~adlvVGADG~~S~vR 58 (475)
+.+.+.+.. ..++.++++++++.++++ +.+.+++| +++.+|.||-|=|....+-
T Consensus 211 ~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 211 ETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 344444432 378999999999876544 77888888 5799999999988776654
No 175
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=53.78 E-value=34 Score=35.31 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=35.1
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcC---CcEEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLEN---GQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~d---G~~~~adlvVGADG~~S~vR 58 (475)
..++++++|+.++.+++.+.+++.+ ++++.+|.||-|-|....+-
T Consensus 222 V~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 222 IEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD 269 (463)
T ss_pred CEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence 3789999999998776666666542 35799999999999876654
No 176
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=53.45 E-value=31 Score=34.14 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=35.0
Q ss_pred HHHHHhhccC---CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
+...|.+.+. ..+++.+++|++++.+ .|++.+| +++||.||-|-|.+|.
T Consensus 147 ~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 147 AIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCChh
Confidence 3345555432 3478889999999643 5666666 4789999999999874
No 177
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=52.70 E-value=25 Score=35.99 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=38.6
Q ss_pred HHHHHhhccCC---CeEEcCcEEEEEEeeCCe-EEEEEcC---C--cEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVGD---EIILNESNVIDFKDHGDK-VSVVLEN---G--QCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~-v~v~~~d---G--~~~~adlvVGADG~~S~ 56 (475)
|-+.|.+.+.. ..++++++|+++++.+++ +.|+..| | .+++|++|+..=|.+|-
T Consensus 183 LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL 245 (488)
T PF06039_consen 183 LTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL 245 (488)
T ss_pred HHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH
Confidence 44455555433 379999999999998776 7777643 3 47999988766666663
No 178
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=52.45 E-value=27 Score=35.91 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=37.7
Q ss_pred HHHhhccC--CCeEEcCcEEEEEEeeCCe-E-EEEEcCCc-----EEEecEEEEecCCCCcccccc
Q 011888 5 QILAKAVG--DEIILNESNVIDFKDHGDK-V-SVVLENGQ-----CYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 5 ~~L~~~~~--~~~i~~~~~v~~v~~~~~~-v-~v~~~dG~-----~~~adlvVGADG~~S~vR~~l 61 (475)
+.|.+.+. ...|+++++|++|..++++ + .|++.+|+ ++.||-||-|=..+. +++.+
T Consensus 217 ~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~-~~~lL 281 (453)
T TIGR02731 217 QPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI-FKLLL 281 (453)
T ss_pred HHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH-HHhhC
Confidence 44444442 2479999999999865444 3 46666665 789998888876654 55554
No 179
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=52.39 E-value=27 Score=24.21 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=24.7
Q ss_pred CCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEE
Q 011888 12 GDEIILNESNVIDFKDHGDKVSVVLENGQCYA 43 (475)
Q Consensus 12 ~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~ 43 (475)
+...+.+..+|++++...+..+|.+.||+++.
T Consensus 17 P~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~ 48 (55)
T PF09465_consen 17 PGSSLYYEGKVLSYDSKSDRYTVLYEDGTELE 48 (55)
T ss_dssp TTTS-EEEEEEEEEETTTTEEEEEETTS-EEE
T ss_pred CCCCcEEEEEEEEecccCceEEEEEcCCCEEE
Confidence 33457778999999998999999999998643
No 180
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=51.32 E-value=33 Score=34.99 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=33.4
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
..+++++++++++.++. + +.+.+|+++.+|+||-|-|.....
T Consensus 194 V~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 194 INLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPNS 235 (427)
T ss_pred CEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCCH
Confidence 36889999999976443 3 567788999999999999987543
No 181
>PRK06370 mercuric reductase; Validated
Probab=51.13 E-value=43 Score=34.56 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=38.8
Q ss_pred HHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEc--C-CcEEEecEEEEecCCCCccc
Q 011888 4 QQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLE--N-GQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 4 ~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~--d-G~~~~adlvVGADG~~S~vR 58 (475)
.+.+.+.+.. ..++++++|++++.+++++.+++. + ++++.+|.||-|=|......
T Consensus 215 ~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 215 AAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 3444444432 378999999999887666655543 3 35799999999999876654
No 182
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=50.85 E-value=45 Score=34.09 Aligned_cols=58 Identities=22% Similarity=0.269 Sum_probs=40.5
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEE-cCCc--EEEecEEEEecCCCCcccccc
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVL-ENGQ--CYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~-~dG~--~~~adlvVGADG~~S~vR~~l 61 (475)
+|.+.|.+.+.. ..++.+++|++++.+++++.+.. .+|+ ++++|.||-|-|.. ..+-+
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf--~s~GL 322 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF--FSGGL 322 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc--ccCce
Confidence 355666666642 37899999999998777776543 3453 58999999998853 44444
No 183
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=50.70 E-value=33 Score=34.99 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=30.8
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCC
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 55 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S 55 (475)
.+++.+++|+++.. +. |.++||+++.+|++|-|=|...
T Consensus 243 V~v~~~~~v~~v~~--~~--v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 243 VDIRTKTAVKEVLD--KE--VVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred CEEEeCCeEEEEeC--CE--EEECCCCEEEccEEEEccCCCC
Confidence 37889999998864 33 5678999999999999999654
No 184
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=50.62 E-value=28 Score=27.43 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=23.6
Q ss_pred eeeccCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEEe
Q 011888 414 TYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI 455 (475)
Q Consensus 414 t~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~~ 455 (475)
..|||. +..|+ ..++.||+|.|.-. .-.+.+++.
T Consensus 36 V~vNG~-----~aKpS--~~VK~GD~l~i~~~-~~~~~v~Vl 69 (100)
T COG1188 36 VKVNGQ-----RAKPS--KEVKVGDILTIRFG-NKEFTVKVL 69 (100)
T ss_pred EEECCE-----Ecccc--cccCCCCEEEEEeC-CcEEEEEEE
Confidence 568998 88776 47889999987765 224555553
No 185
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=50.09 E-value=47 Score=35.52 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=39.1
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCeEE----EEEcCCc--EEEecEEEEecCCCCcc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDKVS----VVLENGQ--CYAGDLLIGADGIWSKV 57 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~----v~~~dG~--~~~adlvVGADG~~S~v 57 (475)
+.+.|.+.+.. ..++.++.++++..+++.|. +...+|+ .++|+.||.|.|..+.+
T Consensus 137 i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 137 ILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 44556665543 37889999999987665432 2334664 58999999999999875
No 186
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=49.78 E-value=28 Score=36.91 Aligned_cols=46 Identities=28% Similarity=0.513 Sum_probs=34.5
Q ss_pred CeEEcCcEEEEEEeeCCeEE-EEEc---CC--cEEEecEEEEecCCCCc-ccc
Q 011888 14 EIILNESNVIDFKDHGDKVS-VVLE---NG--QCYAGDLLIGADGIWSK-VRK 59 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~-v~~~---dG--~~~~adlvVGADG~~S~-vR~ 59 (475)
..++.+++|+++..+++++. |++. +| .+++|+.||-|-|.+|. +.+
T Consensus 164 a~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~ 216 (546)
T PRK11101 164 AQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAE 216 (546)
T ss_pred CEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHH
Confidence 47889999999988776543 4442 23 37999999999999884 444
No 187
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=49.71 E-value=37 Score=38.17 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=36.0
Q ss_pred CeEEcCcEEEEEEeeC--CeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHG--DKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~--~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
..++.+++++++..++ ....+.++||+++.+|+||-|=|.....
T Consensus 202 V~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 202 VRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred CEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 3789999999997643 3456888999999999999999987654
No 188
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=49.19 E-value=43 Score=34.29 Aligned_cols=44 Identities=27% Similarity=0.340 Sum_probs=35.1
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
..++.+++|++++.+++.+.++. +|+++.+|.||-|=|....+.
T Consensus 213 I~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 213 ITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRKPNTE 256 (438)
T ss_pred CEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCCCCcc
Confidence 37889999999987666666653 577899999999999876643
No 189
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=49.16 E-value=34 Score=34.94 Aligned_cols=59 Identities=15% Similarity=-0.004 Sum_probs=41.2
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEee--CCeEE-EEEcC-CcEEEecEEEEecCCCCcccccc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDH--GDKVS-VVLEN-GQCYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~--~~~v~-v~~~d-G~~~~adlvVGADG~~S~vR~~l 61 (475)
|.+.|.+.+.. .+++++++|+++..+ ++.|. |...+ +.+++++.||-|-|..+.-+.++
T Consensus 125 l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 125 LTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHH
Confidence 45566665543 379999999999876 33343 33333 35899999999999988766554
No 190
>PRK14694 putative mercuric reductase; Provisional
Probab=48.85 E-value=45 Score=34.54 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=35.2
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
..++.++++++++.+++.+.+.+.++ ++.+|.||-|=|....+.
T Consensus 233 I~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 233 IEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNTE 276 (468)
T ss_pred CEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCcC
Confidence 36889999999987776666766544 699999999999887654
No 191
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=47.04 E-value=49 Score=34.72 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=40.3
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCe---EEEEEcCCc--EEEecEEEEecCCCCcccccc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDK---VSVVLENGQ--CYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~---v~v~~~dG~--~~~adlvVGADG~~S~vR~~l 61 (475)
|...|.+.+.. ..++++++|+++..+++. |.+...+|+ +++++.||-|.|..+.-.+.+
T Consensus 192 l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 192 LVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMI 257 (506)
T ss_pred HHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHH
Confidence 34455554432 378999999999876654 444444543 689999999999887654444
No 192
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=46.73 E-value=62 Score=32.21 Aligned_cols=53 Identities=15% Similarity=0.380 Sum_probs=26.8
Q ss_pred CCCEEecCCCCCCCCCceeeeCC---------------ccccccceEEEEECC-----eEEEEEcCCccceeeccC
Q 011888 364 NEPYLIGSESHEDFSRTSIVIPS---------------AQVSKMHARISYKDG-----AFYLIDLQSEHGTYVTDN 419 (475)
Q Consensus 364 ~~~~~iGR~~~~~~~~~~i~~~~---------------~~vSr~Ha~i~~~~~-----~~~i~D~~S~nGt~vn~~ 419 (475)
...+-|||+.+.. +|.++-| .+|||.-|+|..+-. +.|..-.+|.+-.|+..+
T Consensus 95 tDMFQIGRSte~~---IDFvV~dt~~G~~~~~~~~~~qStISRfACRI~~dR~pPy~ariyAAGFDss~nIfLgek 167 (416)
T PF04710_consen 95 TDMFQIGRSTESP---IDFVVMDTVPGGQDNEDTQPTQSTISRFACRILCDRSPPYTARIYAAGFDSSRNIFLGEK 167 (416)
T ss_dssp EEEEEEES--STT----SEE---------------EEE--S-TT-EEEEEESSTT--EEEEEC---TTSEEEE-TT
T ss_pred cchhhhccCCCCC---cCEEEeCCCCCCCcCCCCCccccchhheeEEEEeccCCCceEEEEeeccCcccceeehhc
Confidence 5558899999876 5565532 469999999998732 234444456666666554
No 193
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=46.65 E-value=6.5 Score=40.26 Aligned_cols=46 Identities=22% Similarity=0.334 Sum_probs=0.0
Q ss_pred CeEEcCcEEEEEEeeCCeEE-EEEcC--C-cEEEecEEEEecCCCCcccc
Q 011888 14 EIILNESNVIDFKDHGDKVS-VVLEN--G-QCYAGDLLIGADGIWSKVRK 59 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~-v~~~d--G-~~~~adlvVGADG~~S~vR~ 59 (475)
.++++++.|+++..+++.|+ |++.+ | .+++|+++|-|.|-....+.
T Consensus 105 v~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~ 154 (428)
T PF12831_consen 105 VEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDGDLAAL 154 (428)
T ss_dssp --------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 37999999999998875532 44443 4 58999999999996554443
No 194
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.49 E-value=22 Score=27.19 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=32.0
Q ss_pred CCeEEEEEcCCccce--eeccCCCceeecCCCCcEEeCCCCEEEeCCC
Q 011888 400 DGAFYLIDLQSEHGT--YVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 445 (475)
Q Consensus 400 ~~~~~i~D~~S~nGt--~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 445 (475)
...+++++-.=+.|+ .||+. -|++-..+.+.|++||.|.|-.+
T Consensus 48 ~~sifie~g~lrpGiI~LINd~---DWeLleke~y~ledgDiIvfist 92 (96)
T COG5131 48 RDSIFIEHGELRPGIICLINDM---DWELLEKERYPLEDGDIIVFIST 92 (96)
T ss_pred cceeeecCCCCcccEEEEEcCc---cHhhhhcccccCCCCCEEEEEec
Confidence 456788876667784 56886 35666667899999999988654
No 195
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=45.67 E-value=40 Score=34.86 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=40.2
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCeEE-EEE--cCC--cEEEecEEEEecCCCCcccccc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDKVS-VVL--ENG--QCYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~-v~~--~dG--~~~~adlvVGADG~~S~vR~~l 61 (475)
|...|.+.+.. .+++++++|+++..++++|. |.. .+| .+++++.||-|.|..+.-+..+
T Consensus 133 l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~ 198 (466)
T PRK08274 133 LVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWL 198 (466)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHH
Confidence 44555555433 47899999999987666543 333 234 3689999999999877655444
No 196
>PRK14727 putative mercuric reductase; Provisional
Probab=44.77 E-value=62 Score=33.62 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=39.9
Q ss_pred HHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 5 QILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 5 ~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
..|.+.+.. ..++.++++++++.+++++.+.+.++ ++.+|.||-|=|....+.
T Consensus 232 ~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 232 ETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred HHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 334444432 36889999999987777777776655 589999999999988765
No 197
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=44.70 E-value=48 Score=33.99 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=35.9
Q ss_pred HHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 5 QILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 5 ~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
+.+.+.+.. ..+++++++++++. . .+++++|+++.+|+||-|-|.....
T Consensus 193 ~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn~ 243 (438)
T PRK13512 193 QPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPNS 243 (438)
T ss_pred HHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcCh
Confidence 344444433 36889999999863 2 4667788899999999999986543
No 198
>PRK01777 hypothetical protein; Validated
Probab=44.30 E-value=21 Score=28.07 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=22.4
Q ss_pred CccceeeccCCCceeecCCCCcEEeCCCCEEEeCCC
Q 011888 410 SEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 445 (475)
Q Consensus 410 S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 445 (475)
|.+-..|||+ .... ...|++||.|.|=..
T Consensus 48 ~~~~vgI~Gk-----~v~~--d~~L~dGDRVeIyrP 76 (95)
T PRK01777 48 AKNKVGIYSR-----PAKL--TDVLRDGDRVEIYRP 76 (95)
T ss_pred ccceEEEeCe-----ECCC--CCcCCCCCEEEEecC
Confidence 5677889998 7764 468999999987554
No 199
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=44.18 E-value=72 Score=32.86 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=34.4
Q ss_pred CeEEcCcEEEEEEeeCC-eEEEEEcCC--cEEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHGD-KVSVVLENG--QCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~-~v~v~~~dG--~~~~adlvVGADG~~S~vR 58 (475)
..+++++++++++.+++ ++++++.+| +++.+|+||.|-|....+.
T Consensus 224 I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 224 FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence 46888999999987654 566655444 4799999999999876655
No 200
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=43.56 E-value=62 Score=34.58 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=40.0
Q ss_pred HHHHHhhccC---CCeEEcCcEEEEEEeeCCeEE---E-EEcCCc--EEEecEEEEecCCCCcccc
Q 011888 3 LQQILAKAVG---DEIILNESNVIDFKDHGDKVS---V-VLENGQ--CYAGDLLIGADGIWSKVRK 59 (475)
Q Consensus 3 L~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~---v-~~~dG~--~~~adlvVGADG~~S~vR~ 59 (475)
+.+.|.+.+. ...++.++.++++..+++.|. + ...+|+ .+.|+.||-|+|..+.+..
T Consensus 139 i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~ 204 (577)
T PRK06069 139 IMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYG 204 (577)
T ss_pred HHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCC
Confidence 4556666543 237889999999987665442 2 234664 5899999999999987654
No 201
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=43.17 E-value=55 Score=33.48 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=31.0
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
..++.++++++++.++....+.. ++.++.+|+||-|=|....
T Consensus 206 I~v~~~~~v~~i~~~~~~~~v~~-~~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 206 VELHLNEFVKSLIGEDKVEGVVT-DKGEYEADVVIVATGVKPN 247 (444)
T ss_pred CEEEcCCEEEEEecCCcEEEEEe-CCCEEEcCEEEECcCCCcC
Confidence 36889999999975443333444 4557999999999998654
No 202
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=43.01 E-value=19 Score=36.20 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=38.5
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCC--CCcccc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI--WSKVRK 59 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~--~S~vR~ 59 (475)
.++.+..|.++......+.+.+.||.+++.|+||.|=|. ||-+.+
T Consensus 409 ~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~ 455 (659)
T KOG1346|consen 409 DVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAE 455 (659)
T ss_pred eeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcc
Confidence 688899999998888889999999999999999999995 444433
No 203
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=42.82 E-value=65 Score=33.57 Aligned_cols=54 Identities=15% Similarity=0.036 Sum_probs=39.2
Q ss_pred HHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCC---cEEEecEEEEecCCCCccc
Q 011888 5 QILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENG---QCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 5 ~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG---~~~~adlvVGADG~~S~vR 58 (475)
+.+.+.+.. ..++.+++++.++..++.+.|++.+| +++.+|.||-|=|....+.
T Consensus 224 ~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 224 NKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred HHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence 344444432 37889999999987667777887776 3799999999999765543
No 204
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=42.07 E-value=3.2e+02 Score=27.04 Aligned_cols=47 Identities=26% Similarity=0.263 Sum_probs=37.5
Q ss_pred eEEcCcEEEEEEe---eCCeEEEEEcCCcEEEecEEEEecCC--CCcccccc
Q 011888 15 IILNESNVIDFKD---HGDKVSVVLENGQCYAGDLLIGADGI--WSKVRKNL 61 (475)
Q Consensus 15 ~i~~~~~v~~v~~---~~~~v~v~~~dG~~~~adlvVGADG~--~S~vR~~l 61 (475)
.++.+.+|+.++. ++..|.|.+++|+.+.|+=+|-+=|+ ++-++..+
T Consensus 169 i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~ 220 (399)
T KOG2820|consen 169 IFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSL 220 (399)
T ss_pred EEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCccc
Confidence 6889999998873 34568899999999999999999997 45566543
No 205
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=41.76 E-value=57 Score=34.25 Aligned_cols=43 Identities=28% Similarity=0.545 Sum_probs=33.4
Q ss_pred CeEEcCcEEEEEEeeCCeEE-EEEc---CCc--EEEecEEEEecCCCCc
Q 011888 14 EIILNESNVIDFKDHGDKVS-VVLE---NGQ--CYAGDLLIGADGIWSK 56 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~-v~~~---dG~--~~~adlvVGADG~~S~ 56 (475)
..++.+++|++++.+++++. |++. +|+ +++|+.||-|=|.+|.
T Consensus 143 a~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 143 ARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred CEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 37889999999998777643 4443 343 6899999999999875
No 206
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=41.54 E-value=88 Score=31.34 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=40.0
Q ss_pred HHHHHhhccCCCeEEcCcEEEEEEeeCC-eEEEEEcC---C--cEEEecEEEEecCCCCccc
Q 011888 3 LQQILAKAVGDEIILNESNVIDFKDHGD-KVSVVLEN---G--QCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 3 L~~~L~~~~~~~~i~~~~~v~~v~~~~~-~v~v~~~d---G--~~~~adlvVGADG~~S~vR 58 (475)
++++|.+ +.-..+.+++|++.+.+++ .|.|++++ | ++++||.+..|=|++-.+-
T Consensus 258 ~qr~L~k--QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 258 FQRVLQK--QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred HHHHHHh--cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccccc
Confidence 3444544 3336889999999998887 67777765 3 3799999999999775544
No 207
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=40.41 E-value=70 Score=33.83 Aligned_cols=44 Identities=30% Similarity=0.310 Sum_probs=33.2
Q ss_pred eEEcCcEEEEEEeeCC-----eEEEEEcC-Cc--EEEecEEEEecCCCCccc
Q 011888 15 IILNESNVIDFKDHGD-----KVSVVLEN-GQ--CYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~-----~v~v~~~d-G~--~~~adlvVGADG~~S~vR 58 (475)
.|+++++|++++..++ .++|+..+ |+ +-.+|.||.|-|.+|.=.
T Consensus 102 ~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~ 153 (531)
T PF00743_consen 102 HIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPN 153 (531)
T ss_dssp GEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCES
T ss_pred eEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCC
Confidence 5899999999987643 57887764 43 456899999999998543
No 208
>PRK08401 L-aspartate oxidase; Provisional
Probab=40.36 E-value=72 Score=33.02 Aligned_cols=57 Identities=19% Similarity=0.117 Sum_probs=38.7
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccccc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKN 60 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~ 60 (475)
+.+.|.+.+.. ..++.+ +++.+..+++.|.-...+|+.++++-||-|.|..|.....
T Consensus 122 i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~~g~~i~a~~VVLATGG~~~~~~~ 180 (466)
T PRK08401 122 IIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFLDGELLKFDATVIATGGFSGLFKF 180 (466)
T ss_pred HHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEECCEEEEeCeEEECCCcCcCCCCC
Confidence 45556665543 356554 7888876665554222367789999999999999987653
No 209
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=40.04 E-value=49 Score=32.75 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=30.2
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCC
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 55 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S 55 (475)
..++.++++++++. + .+.+.+|+++.+|+||-|=|...
T Consensus 206 V~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 206 IEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred CEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCCCh
Confidence 36888999998853 2 46677899999999999988654
No 210
>PRK07208 hypothetical protein; Provisional
Probab=38.94 E-value=63 Score=33.43 Aligned_cols=55 Identities=20% Similarity=0.316 Sum_probs=36.0
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCeE-E-EEE--cCCc--EEEecEEEEecCCCCcc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDKV-S-VVL--ENGQ--CYAGDLLIGADGIWSKV 57 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v-~-v~~--~dG~--~~~adlvVGADG~~S~v 57 (475)
|-+.|.+.+. ...|+++++|++|+.+++++ . ++. .+|+ ++.||.||-|=..+...
T Consensus 220 l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~ 282 (479)
T PRK07208 220 LWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELV 282 (479)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHH
Confidence 4455655553 24799999999999887753 2 332 2453 68899988875544433
No 211
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=36.66 E-value=29 Score=24.24 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=16.7
Q ss_pred cceeeccCCCceeecCCCCcEEeCCCCEEEe
Q 011888 412 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEF 442 (475)
Q Consensus 412 nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~ 442 (475)
...+|||+ .+.. ..+.|+.||.|.|
T Consensus 34 G~V~VNg~-----~~~~-~~~~l~~Gd~v~i 58 (59)
T TIGR02988 34 NEVLVNGE-----LENR-RGKKLYPGDVIEI 58 (59)
T ss_pred CCEEECCE-----EccC-CCCCCCCCCEEEe
Confidence 34667777 5521 2367999999876
No 212
>PRK06175 L-aspartate oxidase; Provisional
Probab=36.60 E-value=93 Score=31.87 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=37.7
Q ss_pred HHHHHhhccC---CCeEEcCcEEEEEEeeCCeEE-EE-EcCCc--EEEecEEEEecCCCCcc
Q 011888 3 LQQILAKAVG---DEIILNESNVIDFKDHGDKVS-VV-LENGQ--CYAGDLLIGADGIWSKV 57 (475)
Q Consensus 3 L~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~-v~-~~dG~--~~~adlvVGADG~~S~v 57 (475)
+.+.|.+.+. ..+++++++++++..+++.|. |. ..+|+ ++.|+-||-|.|..+.+
T Consensus 130 l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~l 191 (433)
T PRK06175 130 VEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIGGL 191 (433)
T ss_pred HHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccccc
Confidence 4456665543 247999999999987666432 22 23454 68999999999987653
No 213
>PRK10262 thioredoxin reductase; Provisional
Probab=36.49 E-value=1.2e+02 Score=29.39 Aligned_cols=54 Identities=19% Similarity=0.122 Sum_probs=34.9
Q ss_pred HHHHHhhccCCC--eEEcCcEEEEEEeeCCeE-EEEEcCC------cEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVGDE--IILNESNVIDFKDHGDKV-SVVLENG------QCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~~~--~i~~~~~v~~v~~~~~~v-~v~~~dG------~~~~adlvVGADG~~S~ 56 (475)
+.+.+.+.+... .++.++++++++.++.++ .|+++++ +++.+|.||-|=|....
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~ 249 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN 249 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccC
Confidence 344555555543 688899999998765433 3555432 36889999988775443
No 214
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=35.46 E-value=25 Score=23.26 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=16.9
Q ss_pred ccceeeccCCCceeecC-CCCcEEeCCCCEE
Q 011888 411 EHGTYVTDNEGRRYRVS-SNFPARFRPSDTI 440 (475)
Q Consensus 411 ~nGt~vn~~~~~~~~~~-~~~~~~l~~gd~i 440 (475)
..+.+|||+ .+. |+ +.+++||+|
T Consensus 25 ~g~V~VNg~-----~v~~~~--~~v~~~d~I 48 (48)
T PF01479_consen 25 QGRVKVNGK-----VVKDPS--YIVKPGDVI 48 (48)
T ss_dssp TTTEEETTE-----EESSTT--SBESTTEEE
T ss_pred CCEEEECCE-----EEcCCC--CCCCCcCCC
Confidence 356889998 776 44 578899876
No 215
>PRK07121 hypothetical protein; Validated
Probab=35.37 E-value=1.1e+02 Score=32.03 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=37.4
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCC-eEE-EEEc-CCc--EEEe-cEEEEecCCCCc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGD-KVS-VVLE-NGQ--CYAG-DLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~-~v~-v~~~-dG~--~~~a-dlvVGADG~~S~ 56 (475)
+.+.|.+.+.. .+++++++++++..+++ .|. |... +++ ++++ +.||-|.|..+.
T Consensus 179 ~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 179 LMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 45566665543 37999999999987643 332 3333 333 5889 999999999886
No 216
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=34.59 E-value=65 Score=33.01 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=36.4
Q ss_pred eEEcCcEEEEEEeeCC--eEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 15 IILNESNVIDFKDHGD--KVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~--~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
+++.++.+.+++..++ -..|.+.||+++.||+||-.=|+.+.+
T Consensus 271 k~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 271 KFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNT 315 (478)
T ss_pred EEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccc
Confidence 6889999999987663 356899999999999999999987654
No 217
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=33.84 E-value=36 Score=26.63 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=19.6
Q ss_pred eeeccCCCceeecCCCCcEEeCCCCEEEeCC
Q 011888 414 TYVTDNEGRRYRVSSNFPARFRPSDTIEFGS 444 (475)
Q Consensus 414 t~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~ 444 (475)
.+|||.. |+...+..++|++||.|.|=.
T Consensus 62 VlvN~~d---i~~l~g~~t~L~dgD~v~i~P 89 (94)
T cd01764 62 VLINDTD---WELLGEEDYILEDGDHVVFIS 89 (94)
T ss_pred EEECCcc---ccccCCcccCCCCcCEEEEEC
Confidence 5678872 233345678999999998754
No 218
>PRK13748 putative mercuric reductase; Provisional
Probab=33.62 E-value=1.1e+02 Score=32.56 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=35.5
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
..++.++++++++.+++.+.+.+.++ ++.+|.||-|=|....+.
T Consensus 325 I~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 325 IEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTR 368 (561)
T ss_pred CEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCC
Confidence 37889999999987777777776655 699999999999876654
No 219
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=32.67 E-value=1.3e+02 Score=31.14 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=33.4
Q ss_pred CeEEcCcEEEEEEee-CCeEE-EEEcCCc--EEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDH-GDKVS-VVLENGQ--CYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~-~~~v~-v~~~dG~--~~~adlvVGADG~~S~vR 58 (475)
..++.++++++++.+ ++++. +.+.+|+ ++.+|+||-|=|....+.
T Consensus 236 I~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 284 (472)
T PRK05976 236 VRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTE 284 (472)
T ss_pred CEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCC
Confidence 378999999999752 34443 4455674 699999999999877654
No 220
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=32.16 E-value=1.1e+02 Score=32.90 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=30.9
Q ss_pred eEEcCcEEEEEEee-CCe-EEEEEcCCcEEEecEEEEecCCCCc
Q 011888 15 IILNESNVIDFKDH-GDK-VSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 15 ~i~~~~~v~~v~~~-~~~-v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
.++ ..+++++..+ ++. +.|.+.+|..++|+.||-|-|..+.
T Consensus 113 ~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 113 SLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLR 155 (617)
T ss_pred EEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccC
Confidence 444 4578887654 333 4577888989999999999999974
No 221
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=31.73 E-value=35 Score=32.38 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=33.0
Q ss_pred HhhccCC-CeEEcCcEEEEEEeeCCeEEEEEcCCc-EEEecEEEEe
Q 011888 7 LAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQ-CYAGDLLIGA 50 (475)
Q Consensus 7 L~~~~~~-~~i~~~~~v~~v~~~~~~v~v~~~dG~-~~~adlvVGA 50 (475)
|.+.+.. -+|.++++|+.|...++..+++.++|. ...+|.||-|
T Consensus 110 lak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla 155 (331)
T COG3380 110 LAKFLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLA 155 (331)
T ss_pred HHHHHhccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEe
Confidence 4444333 368899999999988999999998764 5677776655
No 222
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=31.70 E-value=31 Score=24.98 Aligned_cols=12 Identities=17% Similarity=0.490 Sum_probs=7.7
Q ss_pred cEEeCCCCEEEe
Q 011888 431 PARFRPSDTIEF 442 (475)
Q Consensus 431 ~~~l~~gd~i~~ 442 (475)
.+.|++||.|.|
T Consensus 56 ~~~l~~GD~i~~ 67 (68)
T PF14478_consen 56 SYKLKDGDKITW 67 (68)
T ss_dssp C-B--TTEEEEE
T ss_pred eeEeCCCCEEEe
Confidence 578999999986
No 223
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=31.65 E-value=52 Score=33.61 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=39.9
Q ss_pred HHhhccCC--CeEEcCcEEEEEEeeCCe-EEEEEcCCcEEEecEEEEecCCCCcccccc
Q 011888 6 ILAKAVGD--EIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 6 ~L~~~~~~--~~i~~~~~v~~v~~~~~~-v~v~~~dG~~~~adlvVGADG~~S~vR~~l 61 (475)
++.+.+.. ..|.+.++|.+|..+.+. +-|.++||++++++.||-==+.+=+.-+.+
T Consensus 269 aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 269 AIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence 34444433 378999999999877765 459999999999999987655554444443
No 224
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=31.38 E-value=98 Score=31.17 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=33.0
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
.++.+++|+.++.+.. +|.+++|+++.+|.||-|=|++..
T Consensus 74 ~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 74 HLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred EEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCCC
Confidence 6788999999987654 456678989999999999999863
No 225
>PTZ00058 glutathione reductase; Provisional
Probab=30.51 E-value=1.3e+02 Score=32.13 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=37.8
Q ss_pred HHHhhccCC--CeEEcCcEEEEEEeeCC-eEEEEEcCC-cEEEecEEEEecCCCCccc
Q 011888 5 QILAKAVGD--EIILNESNVIDFKDHGD-KVSVVLENG-QCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 5 ~~L~~~~~~--~~i~~~~~v~~v~~~~~-~v~v~~~dG-~~~~adlvVGADG~~S~vR 58 (475)
+.+.+.+.. ..++.++++++++.+++ ++.+.+.++ +++.+|.||-|=|....+.
T Consensus 282 ~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 282 NELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCcc
Confidence 334444432 36899999999986544 566666554 5799999999999765543
No 226
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=29.85 E-value=1.2e+02 Score=31.03 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=32.8
Q ss_pred eEEcCcEEEEEEeeCCeEEEEE-cCCcEEE--ecEEEEecCCCCc
Q 011888 15 IILNESNVIDFKDHGDKVSVVL-ENGQCYA--GDLLIGADGIWSK 56 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~-~dG~~~~--adlvVGADG~~S~ 56 (475)
.++.+++|++++.+++.|+++. .+|++++ +|.||-|=|++..
T Consensus 72 ~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 72 DVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred eEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC
Confidence 5778999999998888777754 2356666 9999999998654
No 227
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=29.82 E-value=17 Score=35.20 Aligned_cols=35 Identities=29% Similarity=0.345 Sum_probs=27.7
Q ss_pred cEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 20 SNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 20 ~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
.+|++++.+.+ +|.+.+|+++++|++|-|=|++=.
T Consensus 112 ekv~~f~P~~N--~v~t~gg~eIsYdylviA~Giql~ 146 (446)
T KOG3851|consen 112 EKVKEFNPDKN--TVVTRGGEEISYDYLVIAMGIQLD 146 (446)
T ss_pred HHHHhcCCCcC--eEEccCCcEEeeeeEeeeeeceec
Confidence 56777766665 566789999999999999998643
No 228
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=29.81 E-value=1e+02 Score=31.08 Aligned_cols=54 Identities=30% Similarity=0.330 Sum_probs=35.8
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCeEE-EEEc---CCc--EEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDKVS-VVLE---NGQ--CYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~-v~~~---dG~--~~~adlvVGADG~~S~ 56 (475)
+...|.+.+.+ ..++++++++++..+++.|+ |... +|+ +++|+-||-|-|..+.
T Consensus 143 ~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 143 LIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 34555555533 47999999999999887654 4443 554 6889999999999886
No 229
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=29.47 E-value=1.6e+02 Score=31.83 Aligned_cols=54 Identities=17% Similarity=0.280 Sum_probs=37.7
Q ss_pred HHHHHhhccC---CCeEEcCcEEEEEEeeCCeEE-E---EEcCCc--EEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVG---DEIILNESNVIDFKDHGDKVS-V---VLENGQ--CYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~-v---~~~dG~--~~~adlvVGADG~~S~ 56 (475)
+.++|.+.+. ...++.+++|+++..+++.|. | ...+|+ .++|+.||-|.|..+.
T Consensus 134 ~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 134 YKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred HHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 4556666552 247899999999986666432 2 233554 6899999999998774
No 230
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=29.25 E-value=1.5e+02 Score=31.75 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=34.6
Q ss_pred HHHHhhccCC--CeEEcCcEEEEEEeeCCeEE-EEE--cCCc-EEEe-cEEEEecCCCCc
Q 011888 4 QQILAKAVGD--EIILNESNVIDFKDHGDKVS-VVL--ENGQ-CYAG-DLLIGADGIWSK 56 (475)
Q Consensus 4 ~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~-v~~--~dG~-~~~a-dlvVGADG~~S~ 56 (475)
.+.|.+.+.. .+++++++|+++..+++.|. |.. .++. ++++ +.||-|=|..|.
T Consensus 220 ~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 220 VARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 3455555433 37999999999887665542 333 3443 5788 877777777765
No 231
>smart00363 S4 S4 RNA-binding domain.
Probab=29.09 E-value=66 Score=21.50 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=19.5
Q ss_pred ccceeeccCCCceeec-CCCCcEEeCCCCEEEeCC
Q 011888 411 EHGTYVTDNEGRRYRV-SSNFPARFRPSDTIEFGS 444 (475)
Q Consensus 411 ~nGt~vn~~~~~~~~~-~~~~~~~l~~gd~i~~g~ 444 (475)
..+.+|||+ ++ .+ ...+..||.|.+-.
T Consensus 25 ~g~i~vng~-----~~~~~--~~~l~~gd~i~~~~ 52 (60)
T smart00363 25 QGRVKVNGK-----KVTKP--SYIVKPGDVISVRG 52 (60)
T ss_pred cCCEEECCE-----EecCC--CeEeCCCCEEEEcc
Confidence 346788988 66 44 46789999988754
No 232
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=28.70 E-value=1.4e+02 Score=21.66 Aligned_cols=49 Identities=14% Similarity=0.346 Sum_probs=29.8
Q ss_pred ccccceEEEE-E-CCeE-EEEEcCCccceeeccCCCceeecCCCCcEEeCCCCEEEe
Q 011888 389 VSKMHARISY-K-DGAF-YLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEF 442 (475)
Q Consensus 389 vSr~Ha~i~~-~-~~~~-~i~D~~S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~ 442 (475)
+|+....+.| + ..+| +|...++..-.|+.-. -+.......|..|+.|+|
T Consensus 1 ~~~~~G~Vk~f~~~kGyGFI~~~~g~~dvfvH~s-----~l~~~g~~~l~~G~~V~f 52 (69)
T PRK09507 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFS-----AIQTNGFKTLAEGQRVEF 52 (69)
T ss_pred CCccceEEEEEeCCCCcEEEecCCCCeeEEEEee-----cccccCCCCCCCCCEEEE
Confidence 5778888844 5 3445 5655445556788665 454433356778877655
No 233
>PF10387 DUF2442: Protein of unknown function (DUF2442); InterPro: IPR018841 Several proteins in this entry are annotated as being putative molybdopterin-guanine dinucleotide biosynthesis proteins, but this has not been confirmed. The function of these proteins is therefore not known. ; PDB: 2AUW_B 2X8N_A 3K8R_B.
Probab=27.17 E-value=98 Score=22.99 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=18.2
Q ss_pred EEEEEeeCC-eEEEEEcCCcEEEecE
Q 011888 22 VIDFKDHGD-KVSVVLENGQCYAGDL 46 (475)
Q Consensus 22 v~~v~~~~~-~v~v~~~dG~~~~adl 46 (475)
|++|...++ .+.|+|+||++...|+
T Consensus 1 i~~V~~~~~~~L~v~f~dG~~~~~dl 26 (79)
T PF10387_consen 1 IISVKPLDDYRLRVTFSDGETRIFDL 26 (79)
T ss_dssp -EEEEEETTTEEEEEETTS-EEEEEC
T ss_pred CeEEEEcCCcEEEEEEcCCCEEEEEh
Confidence 456776676 8999999998877765
No 234
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=26.68 E-value=58 Score=24.05 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=19.1
Q ss_pred ccceeeccCCCceeecCCCCcEEeCCCCEEEeCC
Q 011888 411 EHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGS 444 (475)
Q Consensus 411 ~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~ 444 (475)
..-.+|||+ .+. ...+|++||.|.|=.
T Consensus 49 ~~~v~vNg~-----~v~--~~~~l~~gD~v~i~p 75 (80)
T cd00754 49 RVRIAVNGE-----YVR--LDTPLKDGDEVAIIP 75 (80)
T ss_pred cEEEEECCe-----EcC--CCcccCCCCEEEEeC
Confidence 344677887 665 346899999998743
No 235
>cd01721 Sm_D3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D3 heterodimerizes with subunit B and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=26.57 E-value=1.1e+02 Score=22.26 Aligned_cols=25 Identities=40% Similarity=0.643 Sum_probs=20.0
Q ss_pred CCeEEEEEcCCcEEEecEEEEecCCC
Q 011888 29 GDKVSVVLENGQCYAGDLLIGADGIW 54 (475)
Q Consensus 29 ~~~v~v~~~dG~~~~adlvVGADG~~ 54 (475)
+..|+|.+.+|+++++.| +++|+.-
T Consensus 10 g~~V~VeLk~g~~~~G~L-~~~D~~M 34 (70)
T cd01721 10 GHIVTVELKTGEVYRGKL-IEAEDNM 34 (70)
T ss_pred CCEEEEEECCCcEEEEEE-EEEcCCc
Confidence 456889999999888876 7888853
No 236
>PRK06437 hypothetical protein; Provisional
Probab=26.04 E-value=71 Score=23.09 Aligned_cols=24 Identities=13% Similarity=0.005 Sum_probs=17.1
Q ss_pred ceeeccCCCceeecCCCCcEEeCCCCEEEeC
Q 011888 413 GTYVTDNEGRRYRVSSNFPARFRPSDTIEFG 443 (475)
Q Consensus 413 Gt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g 443 (475)
...+||. .++ ....|++||.|.+=
T Consensus 38 aV~vNg~-----iv~--~~~~L~dgD~Veiv 61 (67)
T PRK06437 38 VVIVNGS-----PVL--EDHNVKKEDDVLIL 61 (67)
T ss_pred EEEECCE-----ECC--CceEcCCCCEEEEE
Confidence 3456776 665 45789999999763
No 237
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.90 E-value=71 Score=24.68 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=28.9
Q ss_pred CeEEEEEcCCccce--eeccCCCceeecCCCCcEEeCCCCEEEeCCC
Q 011888 401 GAFYLIDLQSEHGT--YVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 445 (475)
Q Consensus 401 ~~~~i~D~~S~nGt--~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 445 (475)
.++++.+-.=+.|+ .||+. -|.+.....++|++||.|.|-++
T Consensus 54 ~~lFi~~gsvrpGii~lINd~---DWEllekedy~ledgD~ivfiST 97 (101)
T KOG4146|consen 54 DSLFIHHGSVRPGIIVLINDM---DWELLEKEDYPLEDGDHIVFIST 97 (101)
T ss_pred cceEeeCCcCcCcEEEEEecc---chhhhcccccCcccCCEEEEEEe
Confidence 34777776567775 45775 23444556899999999988654
No 238
>PF08804 gp32: gp32 DNA binding protein like; InterPro: IPR012339 This entry is represented by the Bacteriophage T4, Gp32, single-stranded DNA-binding protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Gp32 is essential for T4 DNA replication, recombination and repair, acting to stimulate replisome processing and accuracy through its binding to ssDNA as the replication fork advances. The crystal structure of Gp32 shows an ssDNA binding cleft comprised of regions from three structural subdomains, through which ssDNA can slide freely []. The structure of Gp32 is similar to other phage ssDNA-binding proteins such as Gp2.5 from bacteriophage T4, and gene V protein, both of which have a nucleic acid-binding OB-type fold. However, Gp32 contains a zinc-finger subdomain at residues 63-111 that is not found in the other two phage proteins.; GO: 0003697 single-stranded DNA binding; PDB: 1GPC_A 2A1K_B 2ATQ_B.
Probab=25.46 E-value=69 Score=24.87 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=15.7
Q ss_pred EEECCeEEEEEcCCccceee
Q 011888 397 SYKDGAFYLIDLQSEHGTYV 416 (475)
Q Consensus 397 ~~~~~~~~i~D~~S~nGt~v 416 (475)
+..+++|||+.+-|++|.|=
T Consensus 40 Fk~~g~WyiEN~~sT~G~~d 59 (94)
T PF08804_consen 40 FKGNGGWYIENCPSTHGDYD 59 (94)
T ss_dssp EEETTEEEEEEEGGGGT-ST
T ss_pred ccCCCcEEEecCccccCCCC
Confidence 34578899999999999863
No 239
>PRK08071 L-aspartate oxidase; Provisional
Probab=25.32 E-value=1.6e+02 Score=31.01 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=37.8
Q ss_pred HHHHHhhccCC-CeEEcCcEEEEEEeeCCeEE-EEE--cCCc--EEEecEEEEecCCCCcc
Q 011888 3 LQQILAKAVGD-EIILNESNVIDFKDHGDKVS-VVL--ENGQ--CYAGDLLIGADGIWSKV 57 (475)
Q Consensus 3 L~~~L~~~~~~-~~i~~~~~v~~v~~~~~~v~-v~~--~dG~--~~~adlvVGADG~~S~v 57 (475)
+.+.|.+.+.. .+++.++.++++..+++.|. |.. .+|+ .++|+.||-|-|..+.+
T Consensus 132 i~~~L~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~~ 192 (510)
T PRK08071 132 LLEHLLQELVPHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGGL 192 (510)
T ss_pred HHHHHHHHHhcCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCccc
Confidence 44556665543 47889999999876665433 333 3443 68899999999998863
No 240
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=25.20 E-value=56 Score=24.84 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=17.0
Q ss_pred ceeeccCCCceeecCCCCcEEeCCCCEEEeCC
Q 011888 413 GTYVTDNEGRRYRVSSNFPARFRPSDTIEFGS 444 (475)
Q Consensus 413 Gt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~ 444 (475)
-..||++ .+......+|++||.|.|=.
T Consensus 57 ~v~vN~~-----~v~~~~~~~l~dgdev~i~P 83 (88)
T TIGR01687 57 IILVNGR-----NVDWGLGTELKDGDVVAIFP 83 (88)
T ss_pred EEEECCE-----ecCccCCCCCCCCCEEEEeC
Confidence 3456666 44433335799999988643
No 241
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=25.17 E-value=2.6e+02 Score=26.24 Aligned_cols=43 Identities=19% Similarity=0.060 Sum_probs=30.2
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEc---CC--cEEEecEEEEecCCCCc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLE---NG--QCYAGDLLIGADGIWSK 56 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~---dG--~~~~adlvVGADG~~S~ 56 (475)
..+++++++++++.++....+++. +| +++.+|+||-|-|....
T Consensus 192 v~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~ 239 (300)
T TIGR01292 192 IEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPN 239 (300)
T ss_pred eEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCC
Confidence 368889999999865532234443 23 47899999999996543
No 242
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=24.81 E-value=52 Score=23.34 Aligned_cols=13 Identities=8% Similarity=0.256 Sum_probs=10.5
Q ss_pred cEEeCCCCEEEeC
Q 011888 431 PARFRPSDTIEFG 443 (475)
Q Consensus 431 ~~~l~~gd~i~~g 443 (475)
...|++||.|.|=
T Consensus 47 ~~~L~~gD~vei~ 59 (65)
T PRK06944 47 ARALAAGDRLDLV 59 (65)
T ss_pred cccCCCCCEEEEE
Confidence 5679999999763
No 243
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=24.77 E-value=2.1e+02 Score=29.97 Aligned_cols=42 Identities=14% Similarity=0.265 Sum_probs=29.3
Q ss_pred CeEEcCcEEEEEEeeCCeEE-EEE-cCCc--EEEec--EEEEecCCCC
Q 011888 14 EIILNESNVIDFKDHGDKVS-VVL-ENGQ--CYAGD--LLIGADGIWS 55 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~-v~~-~dG~--~~~ad--lvVGADG~~S 55 (475)
.+++++++++++..+++.|. |.. .+|+ +++++ +|++|+|...
T Consensus 189 v~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~ 236 (513)
T PRK12837 189 ARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGFEQ 236 (513)
T ss_pred CEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCccC
Confidence 47999999999987765443 222 3453 58886 8888888643
No 244
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=24.36 E-value=45 Score=23.82 Aligned_cols=13 Identities=23% Similarity=0.174 Sum_probs=10.8
Q ss_pred cEEeCCCCEEEeC
Q 011888 431 PARFRPSDTIEFG 443 (475)
Q Consensus 431 ~~~l~~gd~i~~g 443 (475)
.+.|++||.|.|=
T Consensus 47 ~~~L~dgD~Ieiv 59 (65)
T PRK06488 47 QFVLHEGDRIEIL 59 (65)
T ss_pred ccccCCCCEEEEE
Confidence 5789999999873
No 245
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=24.11 E-value=58 Score=23.17 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=10.1
Q ss_pred cEEeCCCCEEEe
Q 011888 431 PARFRPSDTIEF 442 (475)
Q Consensus 431 ~~~l~~gd~i~~ 442 (475)
.+.|++||.|.+
T Consensus 46 ~~~L~~gD~vei 57 (64)
T TIGR01683 46 DTILKEGDRIEI 57 (64)
T ss_pred ceecCCCCEEEE
Confidence 468999999876
No 246
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=23.93 E-value=71 Score=22.76 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=10.5
Q ss_pred cEEeCCCCEEEeC
Q 011888 431 PARFRPSDTIEFG 443 (475)
Q Consensus 431 ~~~l~~gd~i~~g 443 (475)
...|++||.|.|=
T Consensus 47 ~~~L~~gD~V~ii 59 (65)
T cd00565 47 STPLQDGDRIEIV 59 (65)
T ss_pred ceecCCCCEEEEE
Confidence 4789999999763
No 247
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=23.69 E-value=60 Score=28.67 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=31.4
Q ss_pred eEEcCcEEEEEEeeCCeE-----EEE---EcCCcEEEecEEEEecCCCCccc
Q 011888 15 IILNESNVIDFKDHGDKV-----SVV---LENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v-----~v~---~~dG~~~~adlvVGADG~~S~vR 58 (475)
+++.++++.+++.....+ .+. ..++.++.+|+||-|-|.++..-
T Consensus 74 ~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 125 (201)
T PF07992_consen 74 EIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTP 125 (201)
T ss_dssp EEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEE
T ss_pred EEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcccccee
Confidence 577789999998877742 332 23456899999999999664433
No 248
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=23.31 E-value=1.5e+02 Score=30.56 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=35.5
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccccc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKN 60 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~ 60 (475)
++++++.|+.++.... +|.+.+|+++.++.||-|=|. |+.+-.
T Consensus 143 e~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs-~~~~l~ 185 (478)
T KOG1336|consen 143 ELILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS-SAKTLD 185 (478)
T ss_pred eEEEcceeEEeecccc--EEEeCCCceeecceEEEeecC-ccccCC
Confidence 5788999999987665 677889999999999999998 554433
No 249
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=23.12 E-value=7e+02 Score=24.23 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=62.8
Q ss_pred cCCcEEEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEECCeEEEEEcC-Ccccee
Q 011888 337 MNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQ-SEHGTY 415 (475)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~D~~-S~nGt~ 415 (475)
..++|..+..-+..- -.+.+ .....+.+.||-...+. .-.+-.||..-|-..|-+++..|.|.. ..+.+|
T Consensus 136 vsGn~aYVadlddgf--Livdv--sdpssP~lagrya~~~~-----d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvl 206 (370)
T COG5276 136 VSGNYAYVADLDDGF--LIVDV--SDPSSPQLAGRYALPGG-----DTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVL 206 (370)
T ss_pred ecCCEEEEeeccCcE--EEEEC--CCCCCceeeeeeccCCC-----CceeEEEecCeEEEEEeCCCeEEEEccCCCCCeE
Confidence 466776666543311 22333 34467899999987762 334667899999998888889999974 456677
Q ss_pred eccCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEE
Q 011888 416 VTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKV 454 (475)
Q Consensus 416 vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~ 454 (475)
+... -..|+....+-.++...+-....-++.+.+
T Consensus 207 i~~~-----n~g~g~~sv~vsdnr~y~vvy~egvlivd~ 240 (370)
T COG5276 207 IGSY-----NTGPGTYSVSVSDNRAYLVVYDEGVLIVDV 240 (370)
T ss_pred EEEE-----ecCCceEEEEecCCeeEEEEcccceEEEec
Confidence 7654 344454445555554444332222444443
No 250
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=23.01 E-value=2.4e+02 Score=29.93 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=31.6
Q ss_pred HHHhhccCC--CeEEcCcEEEEEEeeCCeEE-EEEc-CCc--EEEec--EEEEecCCCC
Q 011888 5 QILAKAVGD--EIILNESNVIDFKDHGDKVS-VVLE-NGQ--CYAGD--LLIGADGIWS 55 (475)
Q Consensus 5 ~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~-v~~~-dG~--~~~ad--lvVGADG~~S 55 (475)
..|.+.+.. .+++++++++.+..+++.|. |... +|+ .++++ +|+++-|..+
T Consensus 212 ~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 212 AGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 344444433 37999999999988766543 3333 453 57785 5565666544
No 251
>PRK08275 putative oxidoreductase; Provisional
Probab=22.64 E-value=1.9e+02 Score=30.77 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=38.2
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEee-CCeEE-EE---EcCCc--EEEecEEEEecCCCCcc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDH-GDKVS-VV---LENGQ--CYAGDLLIGADGIWSKV 57 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~-~~~v~-v~---~~dG~--~~~adlvVGADG~~S~v 57 (475)
+.+.|.+.+.. ..++.++.++++..+ ++.+. |. ..+|+ .++++.||-|.|..+.+
T Consensus 139 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 139 IKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 45666665543 378999999999876 44332 22 23564 58899999999998754
No 252
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=22.15 E-value=1e+02 Score=23.08 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=26.8
Q ss_pred EcccccccCCccccchhhhHHHHH-HHHHHHHH
Q 011888 179 LGDSVHAMQPNLGQGGCMAIEDGY-QLAVELEK 210 (475)
Q Consensus 179 vGDAAH~~~P~~GqG~n~al~Da~-~La~~L~~ 210 (475)
+|-|-+.|+|-.=+..+.||+||. .|...-..
T Consensus 19 vG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~ 51 (79)
T PF10819_consen 19 VGQATMSMDPDQLEHATQAVEDAREQLSQAKSH 51 (79)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999998 66555443
No 253
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=21.71 E-value=38 Score=26.59 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=20.4
Q ss_pred CCccc--eeeccCCCceeecCCCCcEEeCCCCEEEeCCC
Q 011888 409 QSEHG--TYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 445 (475)
Q Consensus 409 ~S~nG--t~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 445 (475)
.=+.| +.||+. =|.+..+..++|++||.|.|=++
T Consensus 57 ~vrPGILvLINd~---DwEl~g~~~y~l~~~D~I~FiST 92 (96)
T PF09138_consen 57 SVRPGILVLINDA---DWELLGEEDYVLKDGDNITFIST 92 (96)
T ss_dssp SB-TTEEEEETTC---EHHHHTCCCSB--TTEEEEEEET
T ss_pred eEcCcEEEEEcCc---cceeecCcceEcCCCCEEEEEcc
Confidence 34455 456775 23555566789999999988543
No 254
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=21.58 E-value=3e+02 Score=26.70 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=36.1
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
|.+.+.+++.. ..+.. ..|.+++..++..+|+..+|+ ++|+.||-|=|+...-=
T Consensus 63 L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 63 LMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred HHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCC
Confidence 44444454432 23333 667777766556778888887 99999999999876433
No 255
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=21.52 E-value=1.7e+02 Score=32.77 Aligned_cols=41 Identities=22% Similarity=0.300 Sum_probs=33.5
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
.+++.+++|++++.+.. +|++.+|+++.+|.||-|=|+...
T Consensus 69 v~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 69 ITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred CEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCCcC
Confidence 36888999999987654 566788989999999999998643
No 256
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=21.49 E-value=59 Score=23.16 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=10.3
Q ss_pred cEEeCCCCEEEe
Q 011888 431 PARFRPSDTIEF 442 (475)
Q Consensus 431 ~~~l~~gd~i~~ 442 (475)
...|++||.|.+
T Consensus 48 ~~~l~~gD~vei 59 (66)
T PRK05659 48 STALREGDVVEI 59 (66)
T ss_pred cccCCCCCEEEE
Confidence 578999999976
No 257
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=21.43 E-value=1.6e+02 Score=28.28 Aligned_cols=53 Identities=15% Similarity=0.394 Sum_probs=31.5
Q ss_pred CCCEEecCCCCCCCCCceeeeC---------------CccccccceEEEEECC-----eEEEEEcCCccceeeccC
Q 011888 364 NEPYLIGSESHEDFSRTSIVIP---------------SAQVSKMHARISYKDG-----AFYLIDLQSEHGTYVTDN 419 (475)
Q Consensus 364 ~~~~~iGR~~~~~~~~~~i~~~---------------~~~vSr~Ha~i~~~~~-----~~~i~D~~S~nGt~vn~~ 419 (475)
...+-|||+.+.- +|.++- -.+|||.-|+|..+.. ..|..-.+|..-.|++.+
T Consensus 108 tDMFQiGRstes~---IDFvV~DT~~g~~~~~da~v~qSTISRfACRIl~dR~~p~~AriyAAGFDss~NIflgek 180 (429)
T KOG3842|consen 108 TDMFQIGRSTESP---IDFVVTDTWPGSQEHSDAQVRQSTISRFACRILCDRNEPYTARIYAAGFDSSKNIFLGEK 180 (429)
T ss_pred cchhhhccCcCCC---cceEEecccCCCcccccchhhhhhhhhheeeeeeccCCccceeEEecccccccceeccch
Confidence 4457788888765 444442 2468999999987621 233333445544555543
No 258
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=21.43 E-value=2.6e+02 Score=28.70 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=30.9
Q ss_pred eEEcCcEEEEEEee--CCeEEEEEcCCcE--EEecEEEEecCCCC
Q 011888 15 IILNESNVIDFKDH--GDKVSVVLENGQC--YAGDLLIGADGIWS 55 (475)
Q Consensus 15 ~i~~~~~v~~v~~~--~~~v~v~~~dG~~--~~adlvVGADG~~S 55 (475)
.+.++++|..+..+ ++..+|+.++|.+ +++|.||-|=|..|
T Consensus 100 ~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~ 144 (443)
T COG2072 100 QIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLS 144 (443)
T ss_pred EEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCC
Confidence 57777777666554 4578899988865 56999999999844
No 259
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=21.16 E-value=86 Score=23.77 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=18.2
Q ss_pred eeeccCCCceeecCCCCcEEeCCCCEEEeCC
Q 011888 414 TYVTDNEGRRYRVSSNFPARFRPSDTIEFGS 444 (475)
Q Consensus 414 t~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~ 444 (475)
.+|||+ .+..+ +.+++||.|.+=.
T Consensus 52 i~vNG~-----~v~~~--~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 52 ILVNGR-----PVDFD--YRLKDGDRVAVYP 75 (81)
T ss_pred EEECCE-----ECCCc--ccCCCCCEEEEEe
Confidence 567888 67653 7899999998754
No 260
>PF02626 AHS2: Allophanate hydrolase subunit 2; InterPro: IPR003778 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 2 of allophanate hydrolase (AHS2) which is found in urea carboxylase.; PDB: 3MML_G 3VA7_A 3OEP_A 3OPF_C 3ORE_B.
Probab=20.88 E-value=1.6e+02 Score=28.14 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=24.5
Q ss_pred CCccceeeccCCCceeecCCCCcEEeCCCCEEEeCCC
Q 011888 409 QSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 445 (475)
Q Consensus 409 ~S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 445 (475)
|..-...|||+ +++..+.+.++.||+++||..
T Consensus 52 Ga~~~~~lng~-----~~~~~~~~~v~~Gd~L~~~~~ 83 (271)
T PF02626_consen 52 GADFEATLNGK-----PVPMWQPFLVKAGDVLKFGPP 83 (271)
T ss_dssp ESCEEEEETTE-----EE-TTSEEEE-TT-EEEEEEE
T ss_pred CCCCceEECCE-----EccCCEEEEECCCCEEEecCC
Confidence 45556678999 999999999999999999984
No 261
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=20.82 E-value=82 Score=23.47 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=12.8
Q ss_pred ecCCCCcEEeCCCCEEEe
Q 011888 425 RVSSNFPARFRPSDTIEF 442 (475)
Q Consensus 425 ~~~~~~~~~l~~gd~i~~ 442 (475)
++.. .++|++||+|++
T Consensus 58 ~Vgl--~~~L~d~DvVeI 73 (75)
T cd01666 58 RVGL--DHVLEDEDVVQI 73 (75)
T ss_pred ECCC--CCEecCCCEEEE
Confidence 6664 468999999986
No 262
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=20.80 E-value=2.9e+02 Score=28.98 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=30.8
Q ss_pred CeEEcCcEEEEEEeeCCeEE-EEEcC---C--cEEEecEEEEecCCCC
Q 011888 14 EIILNESNVIDFKDHGDKVS-VVLEN---G--QCYAGDLLIGADGIWS 55 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~-v~~~d---G--~~~~adlvVGADG~~S 55 (475)
..+++++.+++++.++++++ |++.+ | +++.+|.||-|=|...
T Consensus 403 V~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 403 VDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred CEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 47899999999987655554 66654 2 3688999998888654
No 263
>PLN02546 glutathione reductase
Probab=20.78 E-value=2.4e+02 Score=30.00 Aligned_cols=45 Identities=11% Similarity=0.026 Sum_probs=33.5
Q ss_pred CeEEcCcEEEEEEeeC-CeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHG-DKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~-~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
..++.++++++++.++ +.+.+.+.+++...+|.||-|=|......
T Consensus 308 V~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 308 IEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred cEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 3788999999997643 44666665555555899999999887765
No 264
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=20.65 E-value=69 Score=22.97 Aligned_cols=12 Identities=17% Similarity=0.163 Sum_probs=10.1
Q ss_pred cEEeCCCCEEEe
Q 011888 431 PARFRPSDTIEF 442 (475)
Q Consensus 431 ~~~l~~gd~i~~ 442 (475)
...|++||.|.|
T Consensus 48 ~~~L~~gD~Iei 59 (66)
T PRK08053 48 QHIVQDGDQILL 59 (66)
T ss_pred ccccCCCCEEEE
Confidence 567999999976
No 265
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=20.42 E-value=2.2e+02 Score=30.08 Aligned_cols=54 Identities=20% Similarity=0.133 Sum_probs=37.7
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCe-EE-EEE---cCCc--EEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDK-VS-VVL---ENGQ--CYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~-v~-v~~---~dG~--~~~adlvVGADG~~S~ 56 (475)
+...|.+.+.. ..++++++++++..++++ |. |.. .+|+ .++|+-||-|-|..+.
T Consensus 136 i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 136 MMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 44456555432 478999999999876554 42 222 4564 5899999999999875
No 266
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=20.24 E-value=2.2e+02 Score=28.85 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=31.9
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcC-CcEEE--ecEEEEecCCCC
Q 011888 15 IILNESNVIDFKDHGDKVSVVLEN-GQCYA--GDLLIGADGIWS 55 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~d-G~~~~--adlvVGADG~~S 55 (475)
.++.+++|+.++.++..+.+...+ +++++ +|.||-|=|++.
T Consensus 60 ~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 60 DVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASP 103 (427)
T ss_pred eEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCC
Confidence 567789999998877777776433 45777 999999999844
No 267
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional
Probab=20.21 E-value=1.3e+02 Score=25.25 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=23.4
Q ss_pred ceeeccCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEEe
Q 011888 413 GTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI 455 (475)
Q Consensus 413 Gt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~~ 455 (475)
-+.|||. +..|+ ..+++||.|.|-.. ...+.+++.
T Consensus 35 ~V~vnG~-----~~Kps--~~V~~gd~l~v~~~-~~~~~v~Vl 69 (133)
T PRK10348 35 KVHYNGQ-----RSKPS--KIVELNATLTLRQG-NDERTVIVK 69 (133)
T ss_pred CEEECCE-----ECCCC--CccCCCCEEEEEEC-CEEEEEEEe
Confidence 3566787 66665 45679999988665 346666664
Done!