Query 011888
Match_columns 475
No_of_seqs 487 out of 3374
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 17:22:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rp8_A Flavoprotein monooxygen 100.0 1.4E-32 4.7E-37 278.2 26.4 260 2-278 128-388 (407)
2 4hb9_A Similarities with proba 100.0 1.2E-32 4.2E-37 278.3 21.6 242 2-250 113-381 (412)
3 2xdo_A TETX2 protein; tetracyc 100.0 1.1E-29 3.9E-34 256.1 24.4 235 2-248 129-380 (398)
4 2vou_A 2,6-dihydroxypyridine h 100.0 1.4E-29 4.8E-34 255.3 24.5 236 2-252 100-367 (397)
5 2qa2_A CABE, polyketide oxygen 100.0 1.8E-28 6.1E-33 253.8 20.6 236 2-252 108-349 (499)
6 2qa1_A PGAE, polyketide oxygen 100.0 1.9E-28 6.4E-33 253.8 19.6 235 2-251 107-347 (500)
7 3fmw_A Oxygenase; mithramycin, 100.0 9.9E-30 3.4E-34 266.8 9.9 273 2-297 149-432 (570)
8 2x3n_A Probable FAD-dependent 100.0 5.4E-29 1.8E-33 251.1 14.1 260 2-280 108-378 (399)
9 3c96_A Flavin-containing monoo 100.0 9.8E-28 3.4E-32 242.8 22.2 231 2-247 108-366 (410)
10 1pn0_A Phenol 2-monooxygenase; 99.9 3.6E-27 1.2E-31 251.7 19.4 234 2-252 120-422 (665)
11 3alj_A 2-methyl-3-hydroxypyrid 99.9 5E-28 1.7E-32 242.4 9.1 226 2-247 108-344 (379)
12 1k0i_A P-hydroxybenzoate hydro 99.9 2.3E-27 7.9E-32 238.8 10.9 262 3-282 105-375 (394)
13 2r0c_A REBC; flavin adenine di 99.9 2.4E-26 8.3E-31 240.9 18.5 229 2-251 139-379 (549)
14 3ihg_A RDME; flavoenzyme, anth 99.9 4E-26 1.4E-30 238.9 17.6 233 2-250 121-370 (535)
15 2dkh_A 3-hydroxybenzoate hydro 99.9 2.7E-25 9.1E-30 236.9 18.2 230 2-248 142-409 (639)
16 3c4a_A Probable tryptophan hyd 99.9 8.9E-26 3.1E-30 226.2 8.8 243 2-277 99-353 (381)
17 3atr_A Conserved archaeal prot 99.9 2.7E-23 9.2E-28 212.9 18.5 237 2-252 101-354 (453)
18 3e1t_A Halogenase; flavoprotei 99.9 4.5E-22 1.5E-26 206.9 22.7 238 2-248 112-364 (512)
19 3oz2_A Digeranylgeranylglycero 99.9 1.2E-21 4.1E-26 196.3 22.6 227 2-242 103-339 (397)
20 3cgv_A Geranylgeranyl reductas 99.9 2.5E-21 8.5E-26 194.5 23.4 234 2-251 103-348 (397)
21 3i3l_A Alkylhalidase CMLS; fla 99.9 4E-21 1.4E-25 201.9 17.2 239 2-249 129-377 (591)
22 2gmh_A Electron transfer flavo 99.8 4.6E-20 1.6E-24 194.3 19.2 232 2-243 145-415 (584)
23 4h87_A Kanadaptin; FHA domain 99.8 1E-20 3.4E-25 157.8 10.6 101 338-453 18-129 (130)
24 3va4_A Mediator of DNA damage 99.8 4.8E-20 1.7E-24 153.9 11.7 91 352-459 36-130 (132)
25 3nix_A Flavoprotein/dehydrogen 99.8 5.4E-19 1.8E-23 179.1 18.2 231 2-243 107-349 (421)
26 3gqs_A Adenylate cyclase-like 99.8 2.5E-19 8.6E-24 144.7 12.0 99 338-455 2-102 (106)
27 2pie_A E3 ubiquitin-protein li 99.8 2.9E-19 9.9E-24 151.3 12.2 105 335-455 4-117 (138)
28 3els_A PRE-mRNA leakage protei 99.8 1.1E-19 3.8E-24 156.4 9.5 115 323-445 3-145 (158)
29 2pyx_A Tryptophan halogenase; 99.8 1.1E-18 3.7E-23 182.0 19.0 223 2-247 176-409 (526)
30 1uht_A Expressed protein; FHA 99.8 4.1E-19 1.4E-23 146.5 12.0 92 340-445 12-104 (118)
31 3po8_A RV0020C protein, putati 99.8 4.4E-19 1.5E-23 141.7 10.9 82 354-455 16-97 (100)
32 2xt9_B Putative signal transdu 99.8 7.7E-19 2.6E-23 143.9 11.9 97 336-454 7-104 (115)
33 2weu_A Tryptophan 5-halogenase 99.8 3.2E-18 1.1E-22 178.0 19.2 219 2-248 174-402 (511)
34 2kb3_A Oxoglutarate dehydrogen 99.8 6.5E-19 2.2E-23 149.2 11.3 99 334-454 40-139 (143)
35 2jqj_A DNA damage response pro 99.8 8.7E-19 3E-23 150.7 11.3 98 339-455 16-122 (151)
36 1gxc_A CHK2, CDS1, serine/thre 99.8 2.3E-18 7.8E-23 147.7 12.3 103 335-455 24-141 (149)
37 2csw_A Ubiquitin ligase protei 99.8 5E-19 1.7E-23 151.0 7.9 104 335-454 12-124 (145)
38 2jpe_A Nuclear inhibitor of pr 99.8 1.5E-19 5.3E-24 153.5 4.2 93 339-445 33-128 (140)
39 2kfu_A RV1827 PThr 22; FHA dom 99.8 2E-18 6.8E-23 148.8 10.7 96 338-455 53-149 (162)
40 1lgp_A Cell cycle checkpoint p 99.8 1.6E-18 5.5E-23 142.5 9.6 100 340-455 3-111 (116)
41 2aqj_A Tryptophan halogenase, 99.8 2.8E-18 9.6E-23 179.4 13.8 217 2-246 166-392 (538)
42 3elv_A PRE-mRNA leakage protei 99.8 1.4E-18 4.8E-23 153.4 9.0 118 320-445 47-192 (205)
43 1mzk_A Kinase associated prote 99.8 7.4E-18 2.5E-22 142.8 12.8 83 352-445 18-112 (139)
44 1dmz_A Protein (protein kinase 99.7 2.9E-18 1E-22 148.1 9.9 102 339-455 3-125 (158)
45 1r21_A Antigen KI-67; beta san 99.7 2.7E-18 9.3E-23 143.6 9.1 84 353-455 25-108 (128)
46 3oun_A Putative uncharacterize 99.7 2.9E-18 1E-22 146.1 8.8 75 354-445 78-152 (157)
47 3ihm_A Styrene monooxygenase A 99.7 2.1E-17 7.2E-22 167.9 15.5 194 43-247 155-372 (430)
48 3hx1_A SLR1951 protein; P74513 99.7 9.4E-18 3.2E-22 140.2 10.6 87 342-447 13-109 (131)
49 2e4g_A Tryptophan halogenase; 99.7 5.2E-17 1.8E-21 170.1 18.0 220 2-248 195-425 (550)
50 1qu5_A Protein kinase SPK1; FH 99.7 3.2E-18 1.1E-22 150.8 6.7 108 334-455 22-149 (182)
51 1g3g_A Protien kinase SPK1; FH 99.7 1.7E-17 5.7E-22 144.4 9.8 106 338-456 31-149 (164)
52 1wln_A Afadin; beta sandwich, 99.7 4.8E-17 1.7E-21 134.2 10.6 85 353-455 28-114 (120)
53 1g6g_A Protein kinase RAD53; b 99.7 1.7E-16 5.9E-21 132.2 12.0 79 366-455 37-120 (127)
54 2ff4_A Probable regulatory pro 99.6 4.8E-16 1.7E-20 155.3 11.2 88 354-460 299-386 (388)
55 3fm8_A Kinesin-like protein KI 99.6 8.1E-15 2.8E-19 120.3 11.2 92 342-453 28-122 (124)
56 4ejq_A Kinesin-like protein KI 99.6 1.2E-14 4E-19 124.9 11.1 98 342-454 40-143 (154)
57 3huf_A DNA repair and telomere 99.6 6.4E-15 2.2E-19 137.1 10.1 101 340-454 1-113 (325)
58 2bry_A NEDD9 interacting prote 99.4 2.6E-13 8.8E-18 140.1 5.1 62 168-240 387-449 (497)
59 3uv0_A Mutator 2, isoform B; F 99.3 1.4E-12 4.8E-17 99.5 7.0 67 364-445 20-93 (102)
60 3kt9_A Aprataxin; FHA domain, 99.3 1.2E-11 4.3E-16 96.8 12.3 94 340-453 4-99 (102)
61 4a0e_A YSCD, type III secretio 99.3 6.8E-12 2.3E-16 101.0 9.8 96 339-456 3-99 (123)
62 2brf_A Bifunctional polynucleo 99.2 1.6E-10 5.5E-15 91.3 11.7 99 337-454 6-106 (110)
63 3i6u_A CDS1, serine/threonine- 99.2 3.8E-11 1.3E-15 121.2 9.1 101 336-454 5-120 (419)
64 1yj5_C 5' polynucleotide kinas 99.0 1.6E-09 5.3E-14 88.7 11.1 98 338-454 7-106 (143)
65 1ujx_A Polynucleotide kinase 3 99.0 4.6E-10 1.6E-14 89.8 6.6 97 340-455 16-114 (119)
66 4egx_A Kinesin-like protein KI 99.0 1.9E-09 6.5E-14 94.8 11.1 86 354-455 84-174 (184)
67 1yvv_A Amine oxidase, flavin-c 99.0 1.9E-09 6.5E-14 105.0 11.1 189 14-214 120-329 (336)
68 1wv3_A Similar to DNA segregat 98.6 4.2E-08 1.4E-12 90.2 6.1 64 366-445 93-162 (238)
69 1ryi_A Glycine oxidase; flavop 97.9 1.7E-05 5.8E-10 78.3 8.3 188 3-210 166-361 (382)
70 2gag_B Heterotetrameric sarcos 97.9 8.9E-06 3E-10 81.0 5.5 58 3-61 176-237 (405)
71 1y56_B Sarcosine oxidase; dehy 97.4 0.00026 9E-09 69.7 8.4 58 3-61 151-212 (382)
72 3ps9_A TRNA 5-methylaminomethy 97.2 0.00088 3E-08 71.4 9.9 54 3-56 419-474 (676)
73 2gf3_A MSOX, monomeric sarcosi 97.2 0.00078 2.7E-08 66.3 8.8 53 3-56 152-206 (389)
74 4dgk_A Phytoene dehydrogenase; 97.1 0.01 3.6E-07 60.4 16.3 59 3-61 223-284 (501)
75 3pvc_A TRNA 5-methylaminomethy 97.1 0.00075 2.6E-08 72.1 7.4 54 3-56 414-470 (689)
76 3i6d_A Protoporphyrinogen oxid 97.0 0.017 5.7E-07 58.2 16.1 57 2-58 236-292 (470)
77 2qcu_A Aerobic glycerol-3-phos 97.0 0.004 1.4E-07 63.8 11.4 58 3-60 151-216 (501)
78 3dme_A Conserved exported prot 96.9 0.0066 2.2E-07 58.9 11.5 59 3-61 152-216 (369)
79 3nyc_A D-arginine dehydrogenas 96.8 0.0042 1.4E-07 60.7 9.7 58 3-61 156-216 (381)
80 2oln_A NIKD protein; flavoprot 96.6 0.021 7E-07 56.3 13.3 58 3-61 155-215 (397)
81 3kkj_A Amine oxidase, flavin-c 96.1 0.0038 1.3E-07 57.2 4.1 37 172-214 293-329 (336)
82 2ywl_A Thioredoxin reductase r 95.9 0.0042 1.4E-07 53.9 3.5 57 3-61 58-116 (180)
83 3v76_A Flavoprotein; structura 95.9 0.0071 2.4E-07 60.3 5.3 54 2-56 133-188 (417)
84 2i0z_A NAD(FAD)-utilizing dehy 95.8 0.0081 2.8E-07 60.5 5.2 53 3-55 136-191 (447)
85 2cul_A Glucose-inhibited divis 95.5 0.018 6.2E-07 52.2 6.2 58 3-61 70-131 (232)
86 3nlc_A Uncharacterized protein 95.5 0.012 4E-07 60.8 5.2 54 3-56 222-278 (549)
87 3ka7_A Oxidoreductase; structu 95.4 0.15 5.3E-06 50.3 13.2 55 3-58 198-255 (425)
88 3lov_A Protoporphyrinogen oxid 95.3 0.12 4.2E-06 52.0 12.2 55 3-58 238-292 (475)
89 3nrn_A Uncharacterized protein 95.1 0.24 8.3E-06 48.9 13.5 54 3-58 191-246 (421)
90 2vvm_A Monoamine oxidase N; FA 95.1 0.24 8.3E-06 50.1 13.7 55 3-57 257-314 (495)
91 3dje_A Fructosyl amine: oxygen 94.9 0.024 8.1E-07 56.7 5.2 54 3-56 163-222 (438)
92 1rp0_A ARA6, thiazole biosynth 94.7 0.058 2E-06 50.5 7.1 59 3-61 121-197 (284)
93 3axb_A Putative oxidoreductase 94.5 0.15 5.1E-06 51.0 10.1 58 3-61 183-261 (448)
94 2gv8_A Monooxygenase; FMO, FAD 94.4 0.055 1.9E-06 54.3 6.7 44 15-58 131-180 (447)
95 3ab1_A Ferredoxin--NADP reduct 94.4 0.067 2.3E-06 51.7 7.0 58 4-61 77-137 (360)
96 3da1_A Glycerol-3-phosphate de 93.8 0.18 6.1E-06 52.2 9.2 59 3-61 172-239 (561)
97 3c4n_A Uncharacterized protein 93.8 0.015 5.2E-07 57.6 0.9 58 3-61 174-244 (405)
98 2zbw_A Thioredoxin reductase; 93.6 0.11 3.7E-06 49.6 6.8 48 14-61 80-127 (335)
99 2gqf_A Hypothetical protein HI 93.4 0.066 2.3E-06 52.9 4.9 53 3-56 111-169 (401)
100 2uzz_A N-methyl-L-tryptophan o 93.4 0.065 2.2E-06 52.0 4.7 53 3-56 151-205 (372)
101 1w4x_A Phenylacetone monooxyge 93.0 0.16 5.4E-06 52.4 7.2 44 15-58 112-157 (542)
102 3gwf_A Cyclohexanone monooxyge 93.0 0.18 6.1E-06 51.9 7.5 44 15-58 105-150 (540)
103 4a9w_A Monooxygenase; baeyer-v 92.9 0.1 3.5E-06 49.9 5.3 42 15-57 92-134 (357)
104 1qo8_A Flavocytochrome C3 fuma 92.8 0.11 3.9E-06 53.7 5.7 59 3-61 252-318 (566)
105 1sez_A Protoporphyrinogen oxid 92.7 1.1 3.9E-05 45.1 13.2 56 2-57 244-310 (504)
106 2v3a_A Rubredoxin reductase; a 92.7 0.14 4.7E-06 50.2 5.9 55 4-58 190-246 (384)
107 2q0l_A TRXR, thioredoxin reduc 92.4 0.16 5.6E-06 47.7 6.0 44 15-59 75-118 (311)
108 3jsk_A Cypbp37 protein; octame 92.3 0.18 6.3E-06 48.4 6.1 59 3-61 162-257 (344)
109 3qj4_A Renalase; FAD/NAD(P)-bi 92.1 0.19 6.5E-06 48.1 6.1 50 3-53 114-163 (342)
110 1b37_A Protein (polyamine oxid 92.1 0.25 8.6E-06 49.7 7.2 55 2-56 207-271 (472)
111 1rsg_A FMS1 protein; FAD bindi 91.5 0.25 8.7E-06 50.4 6.5 54 3-56 204-258 (516)
112 1y0p_A Fumarate reductase flav 91.4 0.18 6.3E-06 52.2 5.4 59 3-61 257-323 (571)
113 2yqu_A 2-oxoglutarate dehydrog 91.4 0.16 5.3E-06 51.0 4.7 55 4-58 211-267 (455)
114 2jae_A L-amino acid oxidase; o 91.0 0.31 1.1E-05 49.2 6.6 53 2-54 240-295 (489)
115 4ap3_A Steroid monooxygenase; 90.9 0.34 1.2E-05 49.9 6.7 44 15-58 117-162 (549)
116 3ces_A MNMG, tRNA uridine 5-ca 90.4 0.33 1.1E-05 50.8 6.0 58 3-61 126-187 (651)
117 3k7m_X 6-hydroxy-L-nicotine ox 90.0 0.38 1.3E-05 47.6 6.0 40 15-54 219-258 (431)
118 3cp8_A TRNA uridine 5-carboxym 89.6 0.48 1.6E-05 49.5 6.6 56 3-59 119-178 (641)
119 1vdc_A NTR, NADPH dependent th 89.6 0.17 5.8E-06 48.1 2.9 43 14-58 85-127 (333)
120 3uox_A Otemo; baeyer-villiger 89.5 0.49 1.7E-05 48.7 6.6 44 15-58 105-150 (545)
121 1kf6_A Fumarate reductase flav 89.5 0.64 2.2E-05 48.4 7.5 60 2-61 135-203 (602)
122 3fbs_A Oxidoreductase; structu 88.9 0.66 2.3E-05 42.9 6.5 56 3-58 58-115 (297)
123 1fl2_A Alkyl hydroperoxide red 88.7 0.46 1.6E-05 44.5 5.3 43 15-57 72-117 (310)
124 1s3e_A Amine oxidase [flavin-c 88.5 0.5 1.7E-05 48.1 5.8 53 3-56 217-269 (520)
125 1ges_A Glutathione reductase; 88.2 0.33 1.1E-05 48.6 4.2 45 14-58 223-268 (450)
126 2r9z_A Glutathione amide reduc 88.1 0.49 1.7E-05 47.5 5.3 44 14-57 222-266 (463)
127 2eq6_A Pyruvate dehydrogenase 88.1 0.51 1.8E-05 47.4 5.4 55 4-58 213-274 (464)
128 1d4d_A Flavocytochrome C fumar 88.0 0.55 1.9E-05 48.6 5.7 59 3-61 257-323 (572)
129 3o0h_A Glutathione reductase; 87.5 0.39 1.3E-05 48.6 4.1 45 14-58 247-291 (484)
130 2zxi_A TRNA uridine 5-carboxym 87.4 0.7 2.4E-05 48.1 6.0 57 3-60 125-185 (637)
131 3lzw_A Ferredoxin--NADP reduct 86.1 1.3 4.4E-05 41.6 6.8 55 4-59 70-127 (332)
132 2xve_A Flavin-containing monoo 85.8 1.1 3.7E-05 45.0 6.4 44 16-59 120-170 (464)
133 1pj5_A N,N-dimethylglycine oxi 85.5 0.99 3.4E-05 48.9 6.3 54 3-57 153-209 (830)
134 3cty_A Thioredoxin reductase; 85.5 1.1 3.6E-05 42.2 5.8 41 15-57 88-128 (319)
135 1m6i_A Programmed cell death p 85.3 1 3.5E-05 45.5 6.0 44 14-57 241-284 (493)
136 2iid_A L-amino-acid oxidase; f 84.9 1.3 4.5E-05 44.6 6.6 52 2-54 242-297 (498)
137 1xdi_A RV3303C-LPDA; reductase 84.3 0.83 2.8E-05 46.3 4.7 53 5-57 227-281 (499)
138 4gut_A Lysine-specific histone 83.8 1.2 4E-05 47.9 5.8 40 15-54 545-584 (776)
139 3iwa_A FAD-dependent pyridine 83.2 0.96 3.3E-05 45.4 4.6 53 5-57 206-260 (472)
140 2z3y_A Lysine-specific histone 82.9 1.7 5.8E-05 45.8 6.6 39 15-53 412-456 (662)
141 3fg2_P Putative rubredoxin red 82.6 1.3 4.3E-05 43.5 5.1 44 14-57 199-243 (404)
142 2q7v_A Thioredoxin reductase; 82.4 0.91 3.1E-05 42.8 3.9 42 15-57 81-125 (325)
143 1hyu_A AHPF, alkyl hydroperoxi 81.8 1.4 4.8E-05 44.9 5.3 53 4-56 270-327 (521)
144 1trb_A Thioredoxin reductase; 81.6 1.2 4E-05 41.8 4.3 42 14-57 77-118 (320)
145 2a87_A TRXR, TR, thioredoxin r 81.5 1 3.4E-05 42.8 3.8 42 14-57 86-128 (335)
146 2ivd_A PPO, PPOX, protoporphyr 81.5 1 3.4E-05 45.2 4.0 53 3-56 240-295 (478)
147 1mo9_A ORF3; nucleotide bindin 81.4 1.1 3.7E-05 45.8 4.2 54 5-58 259-319 (523)
148 3lxd_A FAD-dependent pyridine 80.9 1.5 5.3E-05 43.0 5.1 44 14-57 209-253 (415)
149 1fec_A Trypanothione reductase 80.9 1.4 4.6E-05 44.6 4.7 53 5-57 235-290 (490)
150 2rgh_A Alpha-glycerophosphate 80.8 8.5 0.00029 39.6 10.8 48 14-61 203-257 (571)
151 1ebd_A E3BD, dihydrolipoamide 80.6 1.3 4.5E-05 44.2 4.5 44 14-57 226-272 (455)
152 2qae_A Lipoamide, dihydrolipoy 80.4 1.5 5E-05 44.0 4.8 54 4-57 218-278 (468)
153 1ojt_A Surface protein; redox- 80.2 1.7 5.8E-05 43.7 5.2 55 4-58 229-289 (482)
154 3d1c_A Flavin-containing putat 80.0 1.9 6.4E-05 41.3 5.3 42 14-56 103-144 (369)
155 2wpf_A Trypanothione reductase 80.0 1.5 5.1E-05 44.4 4.7 45 14-58 250-295 (495)
156 2gjc_A Thiazole biosynthetic e 79.9 3.1 0.00011 39.5 6.5 59 3-61 148-245 (326)
157 2yg5_A Putrescine oxidase; oxi 79.9 1.9 6.5E-05 42.7 5.4 55 3-60 217-272 (453)
158 2hqm_A GR, grase, glutathione 79.6 1.3 4.5E-05 44.6 4.1 44 14-57 241-287 (479)
159 2xag_A Lysine-specific histone 79.5 2.4 8.3E-05 45.9 6.4 47 3-52 574-626 (852)
160 3p1w_A Rabgdi protein; GDI RAB 78.9 1.9 6.4E-05 43.4 4.9 53 2-54 257-313 (475)
161 1onf_A GR, grase, glutathione 78.4 2.4 8.3E-05 42.8 5.7 45 14-58 232-278 (500)
162 3s5w_A L-ornithine 5-monooxyge 78.3 2.7 9.2E-05 41.8 6.0 42 14-55 142-192 (463)
163 3f8d_A Thioredoxin reductase ( 77.6 2.7 9.1E-05 39.1 5.4 41 15-56 86-126 (323)
164 3ef6_A Toluene 1,2-dioxygenase 77.1 1.3 4.5E-05 43.5 3.2 44 14-57 200-243 (410)
165 1q1r_A Putidaredoxin reductase 76.0 1.9 6.5E-05 42.7 4.0 44 14-57 206-252 (431)
166 3itj_A Thioredoxin reductase 1 75.7 2.1 7E-05 40.3 4.0 43 14-57 99-144 (338)
167 2e5v_A L-aspartate oxidase; ar 75.3 1.4 4.6E-05 44.4 2.8 58 3-61 121-182 (472)
168 2b9w_A Putative aminooxidase; 75.0 3.4 0.00012 40.5 5.5 52 3-56 208-259 (424)
169 3oc4_A Oxidoreductase, pyridin 74.9 4.5 0.00015 40.2 6.5 53 4-57 192-246 (452)
170 1dxl_A Dihydrolipoamide dehydr 74.8 2 6.9E-05 42.9 3.9 54 4-57 221-281 (470)
171 2a8x_A Dihydrolipoyl dehydroge 74.2 2 6.8E-05 42.9 3.7 43 14-59 106-150 (464)
172 1d5t_A Guanine nucleotide diss 73.4 1.7 5.6E-05 43.2 2.8 54 3-56 236-291 (433)
173 1v59_A Dihydrolipoamide dehydr 73.4 2.6 9E-05 42.2 4.3 55 4-58 227-290 (478)
174 2h88_A Succinate dehydrogenase 73.3 8.3 0.00028 40.1 8.2 56 2-57 156-219 (621)
175 4at0_A 3-ketosteroid-delta4-5a 73.2 3.7 0.00013 41.6 5.4 59 2-60 203-269 (510)
176 1zmd_A Dihydrolipoyl dehydroge 72.0 3 0.0001 41.7 4.4 44 14-57 235-284 (474)
177 1chu_A Protein (L-aspartate ox 71.5 2.8 9.5E-05 42.9 4.0 45 14-58 154-211 (540)
178 3ic9_A Dihydrolipoamide dehydr 71.2 5.4 0.00019 40.1 6.1 44 14-57 229-276 (492)
179 2a8x_A Dihydrolipoyl dehydroge 71.1 3.4 0.00012 41.2 4.5 44 14-57 227-273 (464)
180 1c0p_A D-amino acid oxidase; a 70.5 7.9 0.00027 36.8 6.9 41 3-56 144-186 (363)
181 3urh_A Dihydrolipoyl dehydroge 70.0 4.9 0.00017 40.4 5.4 44 14-57 254-302 (491)
182 3ntd_A FAD-dependent pyridine 69.2 4.5 0.00015 41.4 5.0 44 14-57 207-269 (565)
183 1q1r_A Putidaredoxin reductase 68.6 3.8 0.00013 40.5 4.2 42 15-58 76-117 (431)
184 4dsg_A UDP-galactopyranose mut 66.8 6.2 0.00021 39.6 5.4 55 2-58 217-273 (484)
185 3lad_A Dihydrolipoamide dehydr 66.4 7.3 0.00025 38.8 5.8 43 15-57 237-282 (476)
186 2cdu_A NADPH oxidase; flavoenz 66.2 6.2 0.00021 39.1 5.2 44 14-57 206-249 (452)
187 2wdq_A Succinate dehydrogenase 66.2 9.1 0.00031 39.5 6.6 55 3-57 145-208 (588)
188 1trb_A Thioredoxin reductase; 65.5 10 0.00034 35.2 6.3 53 4-56 187-248 (320)
189 3l8k_A Dihydrolipoyl dehydroge 64.9 6.9 0.00024 39.0 5.3 54 4-58 217-275 (466)
190 4dna_A Probable glutathione re 64.6 4.6 0.00016 40.2 3.9 52 5-57 215-270 (463)
191 3nks_A Protoporphyrinogen oxid 64.4 3.6 0.00012 41.0 3.1 53 3-56 236-291 (477)
192 1zk7_A HGII, reductase, mercur 63.8 7 0.00024 38.9 5.1 53 5-58 220-274 (467)
193 2gqw_A Ferredoxin reductase; f 62.2 6.1 0.00021 38.6 4.3 40 14-57 202-241 (408)
194 3vrd_B FCCB subunit, flavocyto 62.1 4.3 0.00015 39.4 3.1 38 15-52 218-255 (401)
195 2bcg_G Secretory pathway GDP d 62.0 5.5 0.00019 39.6 3.9 53 3-56 244-301 (453)
196 4gde_A UDP-galactopyranose mut 61.3 8.5 0.00029 38.5 5.3 50 3-54 224-275 (513)
197 3s5w_A L-ornithine 5-monooxyge 61.1 22 0.00075 35.0 8.2 43 14-56 331-378 (463)
198 1dxl_A Dihydrolipoamide dehydr 60.2 4.8 0.00016 40.1 3.1 43 14-59 111-155 (470)
199 1nhp_A NADH peroxidase; oxidor 60.0 6.8 0.00023 38.7 4.2 53 3-57 193-248 (447)
200 3cgb_A Pyridine nucleotide-dis 57.1 10 0.00035 37.9 4.9 43 14-56 108-153 (480)
201 1ojt_A Surface protein; redox- 55.8 6.7 0.00023 39.3 3.3 42 14-58 110-163 (482)
202 3dgh_A TRXR-1, thioredoxin red 55.5 12 0.00041 37.3 5.2 52 5-56 231-290 (483)
203 1v59_A Dihydrolipoamide dehydr 51.2 7.3 0.00025 38.9 2.7 39 14-55 111-157 (478)
204 3d1c_A Flavin-containing putat 51.1 16 0.00055 34.5 5.1 43 14-56 230-273 (369)
205 2bs2_A Quinol-fumarate reducta 51.0 20 0.00067 37.6 6.0 55 3-57 160-222 (660)
206 4b1b_A TRXR, thioredoxin reduc 50.6 19 0.00065 36.6 5.7 45 14-58 278-322 (542)
207 1lvl_A Dihydrolipoamide dehydr 50.4 6.8 0.00023 38.9 2.3 43 14-58 227-271 (458)
208 3ab1_A Ferredoxin--NADP reduct 50.0 27 0.00093 32.9 6.5 43 14-56 217-264 (360)
209 1vg0_A RAB proteins geranylger 48.8 20 0.00067 37.4 5.5 48 3-50 380-432 (650)
210 2gqw_A Ferredoxin reductase; f 48.3 14 0.00048 36.0 4.2 40 15-56 75-114 (408)
211 2zbw_A Thioredoxin reductase; 47.9 30 0.001 32.0 6.4 43 14-56 206-253 (335)
212 1jnr_A Adenylylsulfate reducta 47.9 24 0.00083 36.7 6.2 55 3-57 153-220 (643)
213 3ayj_A Pro-enzyme of L-phenyla 47.5 8.2 0.00028 40.8 2.4 48 3-50 349-409 (721)
214 3h8l_A NADH oxidase; membrane 46.1 11 0.00038 36.5 3.1 37 14-54 233-269 (409)
215 3ics_A Coenzyme A-disulfide re 46.0 13 0.00046 38.1 3.8 42 14-57 243-284 (588)
216 3dk9_A Grase, GR, glutathione 45.6 21 0.00073 35.4 5.2 43 14-56 243-294 (478)
217 2bc0_A NADH oxidase; flavoprot 45.6 21 0.00073 35.6 5.2 52 4-57 239-293 (490)
218 1y56_A Hypothetical protein PH 44.0 16 0.00055 36.6 4.0 44 14-57 272-315 (493)
219 1ebd_A E3BD, dihydrolipoamide 43.8 21 0.0007 35.3 4.7 41 15-58 107-148 (455)
220 3itj_A Thioredoxin reductase 1 42.5 24 0.00084 32.6 4.8 42 14-55 224-271 (338)
221 3fpz_A Thiazole biosynthetic e 41.7 9.6 0.00033 35.8 1.7 41 172-212 282-324 (326)
222 3cgb_A Pyridine nucleotide-dis 41.2 22 0.00076 35.4 4.4 51 5-57 231-284 (480)
223 2q0l_A TRXR, thioredoxin reduc 40.2 46 0.0016 30.3 6.3 42 14-55 194-241 (311)
224 3klj_A NAD(FAD)-dependent dehy 39.7 27 0.00093 33.6 4.7 37 15-53 78-114 (385)
225 3f8d_A Thioredoxin reductase ( 38.9 42 0.0014 30.6 5.8 42 15-56 206-252 (323)
226 2bc0_A NADH oxidase; flavoprot 36.9 19 0.00064 36.0 3.1 42 14-56 107-150 (490)
227 3kd9_A Coenzyme A disulfide re 36.4 34 0.0012 33.5 4.9 50 5-55 194-244 (449)
228 1xhc_A NADH oxidase /nitrite r 36.0 15 0.00051 35.2 2.1 38 15-57 199-236 (367)
229 3sx6_A Sulfide-quinone reducta 35.2 30 0.001 33.8 4.3 41 15-58 75-115 (437)
230 3r9u_A Thioredoxin reductase; 35.0 49 0.0017 30.0 5.5 40 15-54 199-243 (315)
231 3dgz_A Thioredoxin reductase 2 34.0 43 0.0015 33.3 5.2 52 5-56 229-288 (488)
232 1m6i_A Programmed cell death p 31.6 36 0.0012 34.0 4.2 39 15-55 106-144 (493)
233 3lzw_A Ferredoxin--NADP reduct 30.7 39 0.0013 31.0 4.1 42 14-55 204-250 (332)
234 2q7v_A Thioredoxin reductase; 30.6 76 0.0026 29.1 6.1 42 14-55 203-249 (325)
235 2cu3_A Unknown function protei 30.3 19 0.00065 24.7 1.3 13 431-443 46-58 (64)
236 2cdu_A NADPH oxidase; flavoenz 30.1 39 0.0013 33.1 4.1 42 15-56 74-118 (452)
237 2hj1_A Hypothetical protein; s 29.9 27 0.00092 26.4 2.2 28 411-445 58-85 (97)
238 2k9x_A Tburm1, uncharacterized 29.7 22 0.00075 27.6 1.7 28 414-444 70-97 (110)
239 1zmd_A Dihydrolipoyl dehydroge 28.9 44 0.0015 33.0 4.2 41 15-58 113-155 (474)
240 2k5p_A THis protein, thiamine- 28.4 21 0.00071 25.8 1.3 27 413-444 36-64 (78)
241 3ega_A Pellino-2, protein pell 27.8 2.4E+02 0.0083 25.0 8.1 33 364-399 87-134 (263)
242 1fl2_A Alkyl hydroperoxide red 27.8 73 0.0025 28.9 5.4 42 14-55 195-242 (310)
243 1nhp_A NADH peroxidase; oxidor 27.7 58 0.002 31.8 4.9 42 14-55 71-115 (447)
244 2q5w_D Molybdopterin convertin 26.8 39 0.0013 23.8 2.6 24 413-443 48-71 (77)
245 1vdc_A NTR, NADPH dependent th 26.6 83 0.0028 28.9 5.6 42 15-56 211-260 (333)
246 3hyw_A Sulfide-quinone reducta 25.8 63 0.0021 31.4 4.7 34 19-54 75-108 (430)
247 3rpf_C Molybdopterin convertin 25.6 43 0.0015 23.5 2.6 25 414-444 45-69 (74)
248 2co3_A SAFA pilus subunit; adh 25.3 41 0.0014 26.7 2.5 37 382-418 80-116 (137)
249 2kl0_A Putative thiamin biosyn 25.3 18 0.0006 25.8 0.4 26 413-443 32-59 (73)
250 3fbs_A Oxidoreductase; structu 25.2 90 0.0031 27.9 5.5 36 15-54 190-225 (297)
251 3h28_A Sulfide-quinone reducta 25.1 61 0.0021 31.4 4.5 39 15-56 72-110 (430)
252 1wv3_A Similar to DNA segregat 25.0 80 0.0027 28.1 4.8 34 364-405 20-54 (238)
253 3mml_A Allophanate hydrolase s 24.8 1E+02 0.0035 28.8 5.5 32 409-445 78-109 (318)
254 1ryj_A Unknown; beta/alpha pro 24.4 45 0.0015 23.2 2.4 23 414-443 42-64 (70)
255 1wgk_A Riken cDNA 2900073H19 p 24.4 27 0.00093 27.3 1.4 27 414-443 76-102 (114)
256 2l52_A Methanosarcina acetivor 24.3 33 0.0011 25.8 1.9 30 410-444 63-94 (99)
257 2l8d_A Lamin-B receptor; DNA b 24.0 81 0.0028 21.7 3.4 28 14-41 23-50 (66)
258 1ok0_A Tendamistat, alpha-amyl 23.9 1.8E+02 0.0063 20.2 5.2 46 392-445 9-59 (74)
259 3ef6_A Toluene 1,2-dioxygenase 23.9 71 0.0024 30.8 4.6 38 15-54 73-110 (410)
260 3cty_A Thioredoxin reductase; 23.8 1E+02 0.0034 28.1 5.6 43 14-56 205-253 (319)
261 3nk4_C ZONA pellucida 3; ferti 22.5 38 0.0013 18.5 1.3 12 38-49 6-17 (30)
262 4g6h_A Rotenone-insensitive NA 22.4 52 0.0018 33.0 3.4 40 14-53 287-330 (502)
263 4eqs_A Coenzyme A disulfide re 21.8 65 0.0022 31.5 3.9 37 14-54 203-239 (437)
264 3lxd_A FAD-dependent pyridine 21.1 86 0.0029 30.1 4.6 38 15-54 81-118 (415)
265 2g1e_A Hypothetical protein TA 21.0 48 0.0017 24.1 2.2 25 414-443 58-84 (90)
266 3h28_A Sulfide-quinone reducta 21.0 49 0.0017 32.2 2.8 39 14-54 215-255 (430)
267 1tyg_B YJBS; alpha beta barrel 20.8 34 0.0012 25.2 1.2 25 414-443 55-81 (87)
268 3po0_A Small archaeal modifier 20.4 48 0.0017 24.1 2.0 26 412-444 59-84 (89)
269 3oc4_A Oxidoreductase, pyridin 20.4 90 0.0031 30.5 4.6 41 15-55 74-115 (452)
270 1d3b_A Protein (small nuclear 20.2 1.2E+02 0.0039 21.5 3.9 25 29-54 15-39 (75)
No 1
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=100.00 E-value=1.4e-32 Score=278.22 Aligned_cols=260 Identities=29% Similarity=0.420 Sum_probs=206.1
Q ss_pred hHHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccCC-CCCcccceEEEEEEec
Q 011888 2 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGP-QEAIYSGYTCYTGIAD 80 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~-~~~~~~~~~~~~~~~~ 80 (475)
+|+++|.+.+....|+++++|++++.++++|+|+++||++++||+||||||.+|.||+.+.+. ..+.|.++.++.+.++
T Consensus 128 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~ 207 (407)
T 3rp8_A 128 ELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVE 207 (407)
T ss_dssp HHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTCSSHHHHHSSCCCCEEEEEEEEEEEEE
T ss_pred HHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcChHHHHHhcCCCCCCcccCcEEEEEEEe
Confidence 578888888776779999999999999999999999999999999999999999999999443 3666777777777655
Q ss_pred cCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCCccceeec
Q 011888 81 FVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRR 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
..........+..|.+++.+++.+|.+++...|++....+......+....+.+.+.|..|.+.+..++..........+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (407)
T 3rp8_A 208 IDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRI 287 (407)
T ss_dssp CCTTTCCTTEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTCSCCTTTHHHHHHHHTTTCCHHHHHHHHHSCGGGCEEE
T ss_pred cccccCCCCceEEEECCCcEEEEEEcCCCeEEEEEEeCCCcCCCCCchhHHHHHHHHhcCCChHHHHHHHcCCccceeEE
Confidence 32222334456677788888999999999988887776544333334566788999999999999888877765554445
Q ss_pred ccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhHHHH
Q 011888 161 DIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA 240 (475)
Q Consensus 161 ~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~ 240 (475)
.++......+|+.+||+|+|||||.|+|++|||+|+||+||..|+++|... . +.+.+|+.|+++|++++.
T Consensus 288 ~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~---------~-~~~~~l~~Y~~~r~~~~~ 357 (407)
T 3rp8_A 288 EIHDIEPFSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQT---------R-DIAAALREYEAQRCDRVR 357 (407)
T ss_dssp EEEECCCCSCCEETTEEECGGGTCCCCGGGSCHHHHHHHHHHHHHHHHHSC---------C-CHHHHHHHHHHHHHHHHH
T ss_pred eeEecCCCCceecCCEEEEEcccccCCcchhhhHHHHHHHHHHHHHHHhcC---------C-CHHHHHHHHHHHHHHHHH
Confidence 555555558999999999999999999999999999999999999999842 1 568999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCC
Q 011888 241 VIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHP 278 (475)
Q Consensus 241 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~ 278 (475)
.++..++.+..+.. ...++...+|+..+...
T Consensus 358 ~~~~~s~~~~~~~~-------~~~~~~~~~R~~~l~~~ 388 (407)
T 3rp8_A 358 DLVLKARKRCDITH-------GKDMQLTEAWYQELREE 388 (407)
T ss_dssp HHHHHHHHHHHHHT-------TTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhhhhh-------cCCHHHHHHHHHHHhhc
Confidence 99988877554432 33445667788776544
No 2
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=100.00 E-value=1.2e-32 Score=278.30 Aligned_cols=242 Identities=23% Similarity=0.358 Sum_probs=173.7
Q ss_pred hHHHHHhhccCCCeEEcCcEEEEEEeeCC-eEEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCcccceEEEEEEec
Q 011888 2 TLQQILAKAVGDEIILNESNVIDFKDHGD-KVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIAD 80 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~-~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~ 80 (475)
+|+++|.+.++. .|+++++|+++++.++ +|+|+++||++++|||||||||++|.||+.+.+.....+.+..++.+...
T Consensus 113 ~L~~~L~~~~~~-~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~ 191 (412)
T 4hb9_A 113 ELKEILNKGLAN-TIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNSKVRKQYLPFIERFDVGVSMIIGRAR 191 (412)
T ss_dssp HHHHHHHTTCTT-TEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTTCHHHHHHSTTCCCEEEEEEEEEEEEE
T ss_pred HHHHHHHhhccc-eEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCcchHHHhCCCccccccceeEEEEEEe
Confidence 578889888764 4899999999987654 69999999999999999999999999999997666666666666665543
Q ss_pred cCC-------CCcCCcceEEEec--CceEEEE---EeC--------CC--CeEEEEEEEeCCCCCCC----CCcchHHHH
Q 011888 81 FVP-------ADIESVGYRVFLG--HKQYFVS---SDV--------GA--GKMQWYAFHKEPAGGVD----GPEGKKERL 134 (475)
Q Consensus 81 ~~~-------~~~~~~~~~~~~~--~~~~~~~---~~~--------~~--~~~~~~~~~~~~~~~~~----~~~~~~~~l 134 (475)
..+ ..........+.. ++..++. .|. .. +...|+........... ..+...+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (412)
T 4hb9_A 192 LTPALTALLPQNFRDGTPNSIVPKSPDWLFISMWRAPVNIHVEASLAEIDNFIVWVYVAATDSLPDNITDFSAEALCDLV 271 (412)
T ss_dssp CCHHHHHHSCGGGTSSCCEEECCSSSEEEEEEEEEEESCTTSCGGGCCEEEEEEEEEEEEGGGSCTTGGGCCHHHHHHHH
T ss_pred cchhhhcchhhhhccCCcceEeecCCCcceeeeeecCCceeEEEeccCCCceEEEEEecccccccccccccchHHHHHHH
Confidence 221 1111111111111 1111111 111 11 12233333322211111 123345667
Q ss_pred HHHhhCCChHHHHHHHhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhc
Q 011888 135 LKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKK 214 (475)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~ 214 (475)
.+.+..|.|.+..++...+...+..+.++...+..+|..|||+|+|||||+|+|++|||+|+||+||.+|+++|..+..+
T Consensus 272 ~~~~~~~~p~~~~li~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~~~~ 351 (412)
T 4hb9_A 272 QSRMISWDPSLHTLVQQSDMENISPLHLRSMPHLLPWKSSTVTLLGDAIHNMTPMTGSGANTALRDALLLTQKLASVASG 351 (412)
T ss_dssp HHHTTTSCHHHHHHHHTSCTTCCEEEEEEECCCCCCCCCCSEEECTHHHHCSSCCSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCChHHHHHHHhcccceeccchhccccccccccccCEEEEEcccccCCCchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 78888999999999887776666666666666778999999999999999999999999999999999999999998764
Q ss_pred cCCCCChhhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 011888 215 SNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 250 (475)
Q Consensus 215 ~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~ 250 (475)
. .+++.+|+.|+++|++++..++.+|+...
T Consensus 352 ~------~~~~~aL~~Ye~~R~~~~~~~~~~s~~~~ 381 (412)
T 4hb9_A 352 H------EELVKAISDYEQQMRAYANEIVGISLRSA 381 (412)
T ss_dssp S------SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C------cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 45689999999999999999998887654
No 3
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=99.97 E-value=1.1e-29 Score=256.09 Aligned_cols=235 Identities=20% Similarity=0.227 Sum_probs=174.5
Q ss_pred hHHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCcccceEEEEEEecc
Q 011888 2 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADF 81 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~ 81 (475)
+|.++|.+.+....++++++|++++.++++++|++.+|++++||+||+|||.+|.||+.+. ...+.|.+..++.+.+..
T Consensus 129 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vR~~l~-~~~~~~~g~~~~~~~~~~ 207 (398)
T 2xdo_A 129 DLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFVT-DTEVEETGTFNIQADIHQ 207 (398)
T ss_dssp HHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCSCCTTTC-CCCCEEEEEEEEEEEESS
T ss_pred HHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchhHHhhcc-CCCceEcceEEEEEEeCc
Confidence 5788899888777799999999999988889999999999999999999999999999884 345667666666655432
Q ss_pred CCC--C-c---CCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCC-------CCCcchHHHHHHHhhCCChHHHHH
Q 011888 82 VPA--D-I---ESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGV-------DGPEGKKERLLKIFEGWCDNVVDL 148 (475)
Q Consensus 82 ~~~--~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~ 148 (475)
... + . ...+..++++++..++.+|.+++...|++....+.... ..++...+.+.+.|..|.+.+.++
T Consensus 208 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 287 (398)
T 2xdo_A 208 PEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKEFSDWDERYKEL 287 (398)
T ss_dssp HHHHSHHHHHHHTTSEEEEEETTEEEEEEEEETTEEEEEEEEECCTTC---CCSCTTCHHHHHHHHHHHTTTSCHHHHHH
T ss_pred hhccCchhHhhcCCceEEEecCCCeEEEEeCCCCcEEEEEEEecCcccccccccCcCCHHHHHHHHHHHHcCCChHHHHH
Confidence 110 0 0 01233345566677777788888877776654432211 112334566777888899888887
Q ss_pred HHhCCccceeecccccCCCCccccC-C--cEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhh-H
Q 011888 149 ILATDEEAILRRDIYDRTPIFTWGR-G--RVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPID-I 224 (475)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~-g--rvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~-~ 224 (475)
+.... .+..++++......+|.. + ||+|+|||||+|+|++|||+|+||+||.+|+++|... . .+ .
T Consensus 288 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~--~-------~~~~ 356 (398)
T 2xdo_A 288 IHTTL--SFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADG--K-------FNSI 356 (398)
T ss_dssp HHHCS--CCEEEEEEECCCCSCCCSCCSSCEEECTHHHHCCCCTTSCSHHHHHHHHHHHHHHHHSC--C-------SSSH
T ss_pred HhCcc--cceeeeeEeccCCCCcccCCCccEEEEeehhccCCCccCccHHHHHHHHHHHHHHHHhc--c-------CchH
Confidence 76532 234445555444557875 5 9999999999999999999999999999999999763 1 23 5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q 011888 225 VSALKSYERARRLRVAVIHGLARS 248 (475)
Q Consensus 225 ~~~L~~Y~~~R~~~~~~~~~~s~~ 248 (475)
+.+|+.|+++|++++..++..++.
T Consensus 357 ~~~L~~Y~~~r~~~~~~~~~~s~~ 380 (398)
T 2xdo_A 357 EEAVKNYEQQMFIYGKEAQEESTQ 380 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999988876654
No 4
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=99.97 E-value=1.4e-29 Score=255.30 Aligned_cols=236 Identities=20% Similarity=0.249 Sum_probs=172.9
Q ss_pred hHHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCcccceEEEEEEecc
Q 011888 2 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADF 81 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~ 81 (475)
.|.+.|.+.++...++++++|++++.++++++|++++|++++||+||||||.+|.||+.+. ...+.|.++.+|.++++.
T Consensus 100 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr~~~~-~~~~~~~~~~~~~~~~~~ 178 (397)
T 2vou_A 100 SIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKRLL-GIEPTYAGYVTWRGVLQP 178 (397)
T ss_dssp HHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCHHHHHHH-CCCCEEEEEEEEEEEECT
T ss_pred HHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchhHHHHhc-cCCCCccceEEEEEEeec
Confidence 4677888877666899999999999998999999999999999999999999999999987 556778777778777653
Q ss_pred CCCCcC-----CcceEEEecCceEEEEEeCCCC------eEEEEEEEeCCCCC------CC--------------CCcch
Q 011888 82 VPADIE-----SVGYRVFLGHKQYFVSSDVGAG------KMQWYAFHKEPAGG------VD--------------GPEGK 130 (475)
Q Consensus 82 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~------~~--------------~~~~~ 130 (475)
...+.. ...+.++.+++..++.+|++.+ .+.|+++.+.+... .+ .....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (397)
T 2vou_A 179 GEVADDVWNYFNDKFTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEGPDLDELMTDVRGIRLPTSVHNNSLNPHN 258 (397)
T ss_dssp TSSCHHHHHHHTTEEEEEEETTEEEEEEEECCSSTTSCCEEEEEEEEECCTTHHHHHHTBCTTSCBCSSEECGGGCCHHH
T ss_pred cccChhhhhhhcCceeEEecCCCEEEEEECCCCCCccceeEEEEEEecCCCccchhhhccCCCCcccccccCcccCCHHH
Confidence 211111 1234566677777777777643 55566555433210 00 01223
Q ss_pred HHHHHHHhh-CCChHHHHHHHhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHH
Q 011888 131 KERLLKIFE-GWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELE 209 (475)
Q Consensus 131 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~ 209 (475)
.+++.+.+. .|.+ +.+++..... ...++++.. ..++|+.|||+|+|||||+|+|++|||+|+||+||..|+++|.
T Consensus 259 ~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~-~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~ 334 (397)
T 2vou_A 259 LRQFHSKGESLFKP-FRDLVLNASS--PFVTVVADA-TVDRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFT 334 (397)
T ss_dssp HHHHHHHHTTSCHH-HHHHHHHCSS--CEEEEEEEB-CCSCSEETTEEECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhChH-HHHHHhccCC--cceeeeeee-cCCceecCcEEEEeccccccCCcchhhHHHHHHHHHHHHHHHh
Confidence 344555543 5666 6666655432 223455544 4568999999999999999999999999999999999999997
Q ss_pred HHhhccCCCCChhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 011888 210 KACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVM 252 (475)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~ 252 (475)
.. .+.+.+|+.|+++|++++..++..++....+
T Consensus 335 ~~----------~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~ 367 (397)
T 2vou_A 335 KN----------HDLRGSLQSWETRQLQQGHAYLNKVKKMASR 367 (397)
T ss_dssp HC----------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 51 2457999999999999999999888765544
No 5
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=99.96 E-value=1.8e-28 Score=253.85 Aligned_cols=236 Identities=18% Similarity=0.155 Sum_probs=157.9
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCc---EEEecEEEEecCCCCcccccc-cCCCCCcccceEEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQ---CYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCY 75 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~---~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~ 75 (475)
.|+++|.+.+.. .+|+++++|+++++++++|+|++.+|+ +++||+||||||.+|.||+.+ +......+.. ..+
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg~~~~~~~~~~-~~~ 186 (499)
T 2qa2_A 108 TTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAGFDFPGTSASR-EMF 186 (499)
T ss_dssp HHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCHHHHHTTCCCCEECCCC-CEE
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccHHHHHcCCCCCCCCCcc-EEE
Confidence 467788877653 479999999999999999999998875 899999999999999999998 3333333332 233
Q ss_pred EEEeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCCcc
Q 011888 76 TGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEE 155 (475)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 155 (475)
.+.+.. +. .. ..+.++..++.+++.+|.+++.+.+++................+++.+.+..+.+. .+......
T Consensus 187 ~~~v~~-~~-~~-~~~~~~~~~~g~~~~~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~ 260 (499)
T 2qa2_A 187 LADIRG-CE-IT-PRPIGETVPLGMVMSAPLGDGVDRIIVCERGAPARRRTGPPPYQEVAAAWQRLTGQ---DISHGEPV 260 (499)
T ss_dssp EEEEES-CC-CC-CEEEEEEETTEEEEEEECSSSCEEEEEEETTCCCCCCSSSCCHHHHHHHHHHHHSC---CCTTCEEE
T ss_pred EEEEEE-CC-CC-cceEEEECCCeEEEEEEcCCCEEEEEEEecCCCCccccCCCCHHHHHHHHHHHhCC---CCCcccee
Confidence 333321 11 11 12344566677788889988876655543222111111123344555444322110 00000111
Q ss_pred ceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHh
Q 011888 156 AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERAR 235 (475)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R 235 (475)
....+... .....+|+.|||+|+|||||.|+|++|||+|+||+||.+|+|+|+.++++. ..+.+|++|+++|
T Consensus 261 ~~~~~~~~-~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~-------~~~~~L~~Ye~eR 332 (499)
T 2qa2_A 261 WVSAFGDP-ARQVSAYRRGRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLAAVVSGR-------APAGLLDTYHEER 332 (499)
T ss_dssp EEEEECCC-EEECSCSEETTEEECGGGTEEECCCSSCHHHHHHHHHHHHHHHHHHHHTTS-------SCTHHHHHHHHHH
T ss_pred EEEEEeCC-cEEcccccCCCEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCC-------CChHHHHHHHHHH
Confidence 11112221 134578999999999999999999999999999999999999999987642 2368999999999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 011888 236 RLRVAVIHGLARSAAVM 252 (475)
Q Consensus 236 ~~~~~~~~~~s~~~~~~ 252 (475)
++++..++..++....+
T Consensus 333 ~~~~~~~~~~s~~~~~l 349 (499)
T 2qa2_A 333 HPVGRRLLMNTQAQGML 349 (499)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998887754433
No 6
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=99.96 E-value=1.9e-28 Score=253.76 Aligned_cols=235 Identities=17% Similarity=0.144 Sum_probs=156.6
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCc---EEEecEEEEecCCCCcccccc-cCCCCCcccceEEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQ---CYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCY 75 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~---~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~ 75 (475)
.|+++|.+.+.. .+++++++|+++++++++|+|++++|+ +++||+||||||.+|.||+.+ +......+.. ..+
T Consensus 107 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg~~~~~~~~~~-~~~ 185 (500)
T 2qa1_A 107 VTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAGFDFPGTAATM-EMY 185 (500)
T ss_dssp HHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTCHHHHHTTCCCCEECCCC-EEE
T ss_pred HHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcchHHHHHcCCCcCCCccce-EEE
Confidence 467788777643 479999999999999999999998875 899999999999999999998 3333333332 333
Q ss_pred EEEeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCCcc
Q 011888 76 TGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEE 155 (475)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 155 (475)
.+.+.. +. .+ ..+.++..++.+++.+|.+++.+.+++................+++.+.+..+... .+......
T Consensus 186 ~~~~~~-~~-~~-~~~~~~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~ 259 (500)
T 2qa1_A 186 LADIKG-VE-LQ-PRMIGETLPGGMVMVGPLPGGITRIIVCERGTPPQRRETPPSWHEVADAWKRLTGD---DIAHAEPV 259 (500)
T ss_dssp EEEEES-CC-CC-CEEEEEEETTEEEEEEEETTTEEEEEEEETTCCC-----CCCHHHHHHHHHHHHSC---CCTTSEEE
T ss_pred EEEEEe-CC-CC-CceEEEECCCcEEEEEEcCCCEEEEEEEcCCCCCccccCCCCHHHHHHHHHHhcCC---CCCcccee
Confidence 333322 11 11 12344556667788889888876665543222111111122344454444322100 00000111
Q ss_pred ceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHh
Q 011888 156 AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERAR 235 (475)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R 235 (475)
....+... .....+|..|||+|+|||||.|+|++|||+|+||+||.+|+|+|+.++++. ..+.+|++|+++|
T Consensus 260 ~~~~~~~~-~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~~~g~-------~~~~~L~~Y~~eR 331 (500)
T 2qa1_A 260 WVSAFGNA-TRQVTEYRRGRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNGT-------ATEELLDSYHSER 331 (500)
T ss_dssp EEEEEECC-EEECSCSEETTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHTTS-------SCHHHHHHHHHHH
T ss_pred EEEEeccC-cEEccccccCCEEEEEccccCCCCccccchhhhHHHHHHHHHHHHHHHcCC-------CChHHHHHHHHHH
Confidence 11112221 124578999999999999999999999999999999999999999987642 2378999999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 011888 236 RLRVAVIHGLARSAAV 251 (475)
Q Consensus 236 ~~~~~~~~~~s~~~~~ 251 (475)
++++..++..++....
T Consensus 332 ~~~~~~~~~~s~~~~~ 347 (500)
T 2qa1_A 332 HAVGKRLLMNTQAQGL 347 (500)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888775443
No 7
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=99.96 E-value=9.9e-30 Score=266.84 Aligned_cols=273 Identities=17% Similarity=0.115 Sum_probs=177.9
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEE--cCC-cEEEecEEEEecCCCCcccccc-cCCCCCcccceEEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVL--ENG-QCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCY 75 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~--~dG-~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~ 75 (475)
.|+++|.+.+.. .+|+++++|+++++++++|+|++ .+| ++++||+||||||.+|.||+.+ +......|.. .++
T Consensus 149 ~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S~vR~~lGi~~~~~~~~~-~~~ 227 (570)
T 3fmw_A 149 RTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRSTVRRLAADRFPGTEATV-RAL 227 (570)
T ss_dssp HHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSCHHHHHTTCCCCCCCCCE-EEE
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCchHHHHcCCCCccceeee-EEE
Confidence 467778777653 37899999999999999999988 678 7899999999999999999998 4444455554 333
Q ss_pred EEEeccCCCCcCCcceEEEecCceEEEE-EeCCCCeE-EEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCC
Q 011888 76 TGIADFVPADIESVGYRVFLGHKQYFVS-SDVGAGKM-QWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATD 153 (475)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 153 (475)
...+.... .. ..+.+...+.+++++ +|.+++.. .|++................+++.+.+..+.+.. +....
T Consensus 228 ~~~v~~~~-~~--~~~~~~~~~~G~~~~~~P~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ 301 (570)
T 3fmw_A 228 IGYVTTPE-RE--VPRRWERTPDGILVLAFPPEGGLGPGWSSSSTGHSPAADEGPVTLEDLGAAVARVRGTP---LTLTE 301 (570)
T ss_dssp EEECCCCS-CS--SCCCCCCCCSSCEEECCCC------CEEEEEESCC-----CCCCHHHHHHHTTSSSSCC---CCCCS
T ss_pred EEEEEecC-CC--cceEEEecCCEEEEEEeecCCCeEEEEEEEeCCCCccccccCCCHHHHHHHHHHHhhcc---cccce
Confidence 33332211 11 112222234444454 68877765 5555443322111122344667777777654321 11111
Q ss_pred cc-ceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHH
Q 011888 154 EE-AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYE 232 (475)
Q Consensus 154 ~~-~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~ 232 (475)
.. ....+++.. ....+|..|||+|+|||||.++|++|||+|+||+||.+|+|+|..++++ ...+.+|+.|+
T Consensus 302 ~~~~~~~~~~~~-~~a~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~DA~~La~~La~~~~g-------~~~~~lL~~Ye 373 (570)
T 3fmw_A 302 PVSWLSRFGDAS-RQAKRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVRG-------WGSEELLDTYH 373 (570)
T ss_dssp CCEEEEEECCCC-EECSCSEETTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHHS-------CCCHHHHHHHH
T ss_pred eeeeeEEeeccc-ccccccccCCEEEEEecceecCCCcCcCHhHHHHHHHHHHHHHHHHHcC-------CCcHHHHHHHH
Confidence 11 122333332 2457899999999999999999999999999999999999999998764 23478999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCcc--ceeEEecchhhhHHh
Q 011888 233 RARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG--GRFFIDLAMPLMLSW 297 (475)
Q Consensus 233 ~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~--~~~~~~~~~g~~~~~ 297 (475)
++|++++..++..++.+. .+|+.+..+...+|++.+.+. ..+ ++.++++++|+.++|
T Consensus 374 ~eR~~~~~~~~~~s~~~~-------~l~~~~~~~~~~lR~~~~~l~-~~~~~~~~~~~~~~g~~~~Y 432 (570)
T 3fmw_A 374 DERHPVAERVLLNTRAQL-------ALMRPDEQHTTPLRGFVEELL-GTDEVNRYFTGMITGTDVRY 432 (570)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHSCSCTTTHHHHHHHHHHHT-TSHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHH-------HHhcCCchHHHHHHHHHHHHh-cCHHHHHHHHHHHhCCCccc
Confidence 999999998887776533 344444444778899887776 344 366666666655443
No 8
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=99.96 E-value=5.4e-29 Score=251.15 Aligned_cols=260 Identities=18% Similarity=0.213 Sum_probs=177.6
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCeE--EEEEcCCcEEEecEEEEecCCCCcccccccCCCCCc--ccce--
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDKV--SVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAI--YSGY-- 72 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v--~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~--~~~~-- 72 (475)
+|.+.|.+.+.+ ..++++++|++++.++++| +|++.+|++++||+||+|||.+|.+|+.+....... +.+.
T Consensus 108 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg~~~~~~~p~~~~~~ 187 (399)
T 2x3n_A 108 SLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPML 187 (399)
T ss_dssp HHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTCHHHHHTSCCCCCCCCCSSCEE
T ss_pred HHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCChHHHHHhCCCccccCCCCCCce
Confidence 467788887765 3789999999999988888 899999999999999999999999999883322233 4444
Q ss_pred EEEEEEeccCCCCcCCcceEEEecC-ceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHH-HHHH
Q 011888 73 TCYTGIADFVPADIESVGYRVFLGH-KQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVV-DLIL 150 (475)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~ 150 (475)
.++.+.++. +.+.. . .++.+ +.+++.+|.+++.+.|++..+.............+++.+.+..|.+.+. ..+.
T Consensus 188 ~~~~~~~~~---~~~~~-~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (399)
T 2x3n_A 188 VGTFALAPC---VAERN-R-LYVDSQGGLAYFYPIGFDRARLVVSFPREEARELMADTRGESLRRRLQRFVGDESAEAIA 262 (399)
T ss_dssp EEEEECCHH---HHHCE-E-EEECTTSCEEEEEEETTTEEEEEEECCHHHHHHHHHSTTSHHHHHHHHTTCCGGGHHHHH
T ss_pred EEEEEEecC---CCCCc-c-EEEcCCCcEEEEEEcCCCEEEEEEEeCccccccccccCCHHHHHHHHhhcCCcchhhHHh
Confidence 555554332 11111 2 55566 7788888988888888764421100000000234567777888877762 3333
Q ss_pred hCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHH
Q 011888 151 ATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKS 230 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~ 230 (475)
...+..+..+++......++|..|||+|+|||||.|+|++|||+|+||+||.+|+++|...++.+ .+.+.+|+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~~~~~------~~~~~~l~~ 336 (399)
T 2x3n_A 263 AVTGTSRFKGIPIGYLNLDRYWADNVAMLGDAIHNVHPITGQGMNLAIEDASALADALDLALRDA------CALEDALAG 336 (399)
T ss_dssp TCCCSTTCEECCCCCEECSCSEETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHHHTTS------SCHHHHHHH
T ss_pred cCCccceEEechhhcccccccccCcEEEEechhccCCCcccccHHHHHHHHHHHHHHHHhhhccc------chHHHHHHH
Confidence 33311234455555345678999999999999999999999999999999999999999876532 345889999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCC
Q 011888 231 YERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGR 280 (475)
Q Consensus 231 Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ 280 (475)
|+++|++++..++..++....+.. ...++..++ +..+.+...
T Consensus 337 Y~~~r~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~-~~~~~~~~~ 378 (399)
T 2x3n_A 337 YQAERFPVNQAIVSYGHALATSLE-------DRQRFAGVF-DTALQGSSR 378 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-------CHHHHHHHH-HC-------
T ss_pred HHHHhccHHHHHHHHHHHhhhhhc-------ccCchHHHH-HHHHhhhcC
Confidence 999999999999888876554322 222334555 666555443
No 9
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=99.96 E-value=9.8e-28 Score=242.85 Aligned_cols=231 Identities=31% Similarity=0.493 Sum_probs=165.4
Q ss_pred hHHHHHhhccCC----CeEEcCcEEEEEEeeCCeEEEEEcC---C--cEEEecEEEEecCCCCcccccccC-CCCCcccc
Q 011888 2 TLQQILAKAVGD----EIILNESNVIDFKDHGDKVSVVLEN---G--QCYAGDLLIGADGIWSKVRKNLFG-PQEAIYSG 71 (475)
Q Consensus 2 ~L~~~L~~~~~~----~~i~~~~~v~~v~~~~~~v~v~~~d---G--~~~~adlvVGADG~~S~vR~~l~~-~~~~~~~~ 71 (475)
+|.++|.+.+.. ..++++++|++++. +++|+|++.+ | ++++||+||||||.+|.||+.+.+ ...+.|.+
T Consensus 108 ~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~vR~~l~~~~~~~~~~g 186 (410)
T 3c96_A 108 ELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLSHGG 186 (410)
T ss_dssp HHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESEEEECCCTTCHHHHHHCTTCCCCEEEE
T ss_pred HHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEecCEEEECCCccchhHHHhcCCCCCCCcCC
Confidence 467777776632 36999999999998 7788898876 7 579999999999999999999843 33456777
Q ss_pred eEEEEEEeccCCCCcCCcceEEEec--CceEEEEEeCCC-------CeEEEEEEEeCC------CCCCCCCcchHHHHHH
Q 011888 72 YTCYTGIADFVPADIESVGYRVFLG--HKQYFVSSDVGA-------GKMQWYAFHKEP------AGGVDGPEGKKERLLK 136 (475)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------~~~~~~~~~~~~------~~~~~~~~~~~~~l~~ 136 (475)
...|.++....+. .... ..++.+ .+..++.+|+.+ ..+.|++..... ...........+++.+
T Consensus 187 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 264 (410)
T 3c96_A 187 ITMWRGVTEFDRF-LDGK-TMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLP 264 (410)
T ss_dssp EEEEEEEEEESCC-TTSS-EEEEEECTTCCEEEEEECCHHHHTTTCEEEEEEEEEEHHHHCCCCSSCCTTCBCCHHHHHH
T ss_pred eeEEEeecccccc-cCCC-eEEEecCCCCcEEEEEecCCcccCCCCcEEEEEEEecCcccccCCCccccCCCCCHHHHHH
Confidence 6666665442211 1112 223333 355677778752 345676654321 1111112244677888
Q ss_pred HhhCCCh---HHHHHHHhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhh
Q 011888 137 IFEGWCD---NVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACK 213 (475)
Q Consensus 137 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~ 213 (475)
.|..|.+ .+..++.... .+..+++....+.++|..|||+|||||||+|+|++|||+|+||+||.+|+++|...
T Consensus 265 ~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~-- 340 (410)
T 3c96_A 265 FFADWDLGWFDIRDLLTRNQ--LILQYPMVDRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARN-- 340 (410)
T ss_dssp HHTTCCBTTBCHHHHHHTCS--EEEEEEEEECCCCSCCCBTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHHHC--
T ss_pred HhcCCCCchhHHHHHHhcCc--ccceeecccCCCccccccCCEEEEecccCCCCCccchhHHHHHHHHHHHHHHHhcc--
Confidence 8888754 2455555443 24455666555678999999999999999999999999999999999999999862
Q ss_pred ccCCCCChhhHHHHHHHHHHHhhHHHHHHHHHHH
Q 011888 214 KSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 247 (475)
Q Consensus 214 ~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~ 247 (475)
.+.+.+|+.|+++|++++..++..++
T Consensus 341 --------~~~~~~L~~Ye~~r~~~~~~~~~~s~ 366 (410)
T 3c96_A 341 --------ADVAAALREYEEARRPTANKIILANR 366 (410)
T ss_dssp --------SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 24588999999999999999888776
No 10
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=99.95 E-value=3.6e-27 Score=251.72 Aligned_cols=234 Identities=18% Similarity=0.228 Sum_probs=150.5
Q ss_pred hHHHHHhhccCC-----CeEEcCcEEEEEEeeC--------CeEEEEEc-------------------------------
Q 011888 2 TLQQILAKAVGD-----EIILNESNVIDFKDHG--------DKVSVVLE------------------------------- 37 (475)
Q Consensus 2 ~L~~~L~~~~~~-----~~i~~~~~v~~v~~~~--------~~v~v~~~------------------------------- 37 (475)
.|+++|++.+.. ..|++++++++++.++ ++|+|++.
T Consensus 120 ~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 199 (665)
T 1pn0_A 120 RIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEE 199 (665)
T ss_dssp HHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCCEEEEEEecccccccccccccccccccccccccccccc
Confidence 467788777642 4799999999999875 46888774
Q ss_pred -----------CC--cEEEecEEEEecCCCCcccccc-cCCCCCcccceEEEEEEeccCC-CCcCC--cceEEEecCceE
Q 011888 38 -----------NG--QCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCYTGIADFVP-ADIES--VGYRVFLGHKQY 100 (475)
Q Consensus 38 -----------dG--~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~ 100 (475)
+| ++++|||||||||++|.||+++ +......+.. .| ++.+..+ .+.+. ....++..+.+.
T Consensus 200 d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR~~lg~~~~g~~~~~--~~-~v~d~~~~~~~p~~~~~~~~~~~~~g~ 276 (665)
T 1pn0_A 200 DANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMIGEQTDY--IW-GVLDAVPASNFPDIRSRCAIHSAESGS 276 (665)
T ss_dssp HTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHHTCCCEEEEEEE--EE-EEEEEEEECCCTTTTSEEEEECSSSCE
T ss_pred cccccccccCCCCceEEEEeCEEEeccCCCCHHHHhcCCCCCCCCccE--EE-EEEEEEECCCCCCcceEEEEEeCCCce
Confidence 35 4799999999999999999998 3332223322 22 2222111 11111 122233334566
Q ss_pred EEEEeCCCCeEEEEEEEeCCC---CCCCCCcchHHHHHHHhhCCChHHHHHHHh--CCccceeeccccc--CCCCcccc-
Q 011888 101 FVSSDVGAGKMQWYAFHKEPA---GGVDGPEGKKERLLKIFEGWCDNVVDLILA--TDEEAILRRDIYD--RTPIFTWG- 172 (475)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~- 172 (475)
++++|.+++.+.|++...... ..........+++.+.+.. .+.. .....+..+..|. ...+++|.
T Consensus 277 ~~~~P~~~~~~r~~~~~~~~~~~~~~~~~~~~t~e~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~r~a~~~~~ 349 (665)
T 1pn0_A 277 IMIIPRENNLVRFYVQLQARAEKGGRVDRTKFTPEVVIANAKK-------IFHPYTFDVQQLDWFTAYHIGQRVTEKFSK 349 (665)
T ss_dssp EEEEECSTTCEEEEEEECC----------CCCCHHHHHHHHHH-------HHTTSCCEEEEEEEEEEEEEEEEECSCSEE
T ss_pred EEEEEcCCCEEEEEEEeCCccccccccCcCCCCHHHHHHHHHH-------HhCcccCceeeEEEEEeeeccceehhhccc
Confidence 777888888666665543321 0001112233444443321 1110 0011122233332 23457898
Q ss_pred CCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 011888 173 RGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVM 252 (475)
Q Consensus 173 ~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~ 252 (475)
.|||+|+|||||+|+|++|||||+||+||.+|+|+|+.++++. ..+.+|++|+++|++++..++..++.+..+
T Consensus 350 ~gRV~L~GDAAH~~~P~~GqG~N~gi~DA~nLawkLa~vl~g~-------a~~~lL~tYe~eR~p~a~~~i~~s~~~~~l 422 (665)
T 1pn0_A 350 DERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGR-------AKRDILKTYEEERQPFAQALIDFDHQFSRL 422 (665)
T ss_dssp TTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTTC-------BCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECccccCCCcccCCcchhHHHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999988642 236789999999999999998887765443
No 11
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=99.94 E-value=5e-28 Score=242.44 Aligned_cols=226 Identities=23% Similarity=0.278 Sum_probs=157.6
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCcccceEEEEEEe
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIA 79 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~~~~~~~ 79 (475)
+|.+.|.+.+.. ..++++++|++++. ++ +|++.||++++||+||+|||.+|.+|+.+.....+.+.++.++.+.+
T Consensus 108 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~-~v~~~~g~~~~ad~vV~AdG~~s~vr~~l~~~~~~~~~~~~~~~~~~ 184 (379)
T 3alj_A 108 HLHDALVNRARALGVDISVNSEAVAADP--VG-RLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIV 184 (379)
T ss_dssp HHHHHHHHHHHHTTCEEESSCCEEEEET--TT-EEEETTSCEEECSEEEECCCTTCHHHHHHCCCEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC-EEEECCCCEEEcCEEEECCCccHHHHHHhcCCCCcCcCCcEEEEEEe
Confidence 456777776643 37999999999987 34 88889999999999999999999999998543344566666666665
Q ss_pred ccC----CCCcCCcceEE--EecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHH---HHHH
Q 011888 80 DFV----PADIESVGYRV--FLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVV---DLIL 150 (475)
Q Consensus 80 ~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~ 150 (475)
+.. +........+. +++++.+++.+|.+++...|++....... . + +.+.+.|..|.+.+. +++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~-~----~~l~~~~~~~~~~~~~~~~~l~ 257 (379)
T 3alj_A 185 PRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLMAPAADP--R-G----SSVPIDLEVWVEMFPFLEPCLI 257 (379)
T ss_dssp ECCHHHHCSSCTTSEEEEECCSSSCCEEEEEECSSSEEEEEEEECTTCT--T-T----TCSSCCHHHHHHHCGGGHHHHH
T ss_pred chhhccCCcCCcccccccceEECCCCEEEEEECCCCcEEEEEEecCCCC--C-H----HHHHHHHhcCCchhccHHHHHh
Confidence 432 22111123333 45677788889999998888766543110 0 1 222222333322222 3333
Q ss_pred hCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHH
Q 011888 151 ATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKS 230 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~ 230 (475)
......+..++++...+.++|..|||+|+|||||.|+|++|||+|+||+||.+|+++|... .+.+.+|+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~ai~da~~La~~L~~~----------~~~~~~l~~ 327 (379)
T 3alj_A 258 EAAKLKTARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEEG----------SSVEDALVA 327 (379)
T ss_dssp HHHTCTTCCEEEEEEEEESCSEETTEEECTHHHHCCCGGGSCHHHHHHHHHHHHHHHTTSS----------SCHHHHHHH
T ss_pred hCCccceEEecccccCCCCCcccCcEEEEEcccCCCCcchhhhHHHHHHHHHHHHHHhccc----------cCHHHHHHH
Confidence 2211223444555544467899999999999999999999999999999999999998641 245789999
Q ss_pred HHHHhhHHHHHHHHHHH
Q 011888 231 YERARRLRVAVIHGLAR 247 (475)
Q Consensus 231 Y~~~R~~~~~~~~~~s~ 247 (475)
|+++|++++..++..+.
T Consensus 328 Y~~~r~~~~~~~~~~s~ 344 (379)
T 3alj_A 328 WETRIRPITDRCQALSG 344 (379)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999998887773
No 12
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=99.94 E-value=2.3e-27 Score=238.75 Aligned_cols=262 Identities=14% Similarity=0.109 Sum_probs=159.3
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeC-CeEEEEE-cCCc--EEEecEEEEecCCCCcccccccCCCCCcccce--EE
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHG-DKVSVVL-ENGQ--CYAGDLLIGADGIWSKVRKNLFGPQEAIYSGY--TC 74 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~-~~v~v~~-~dG~--~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~--~~ 74 (475)
|.+.|.+.+. ...++++++|++++.++ +++.|++ .+|+ +++||+||||||.+|.||+.+.....+.|.+. ..
T Consensus 105 l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~ 184 (394)
T 1k0i_A 105 VTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFG 184 (394)
T ss_dssp HHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCSTGGGSCGGGCEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCcHHHHhcCccccccccccccce
Confidence 4556666543 34799999999998764 5688888 7887 79999999999999999999843223334332 33
Q ss_pred EEEEeccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhh-CCChHHHHHHHhCC
Q 011888 75 YTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFE-GWCDNVVDLILATD 153 (475)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 153 (475)
+.++....+.... ...+...++.+++.++..++...|++........ .....+.+.+.+. .+.+.....+...+
T Consensus 185 ~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 259 (394)
T 1k0i_A 185 WLGLLADTPPVSH--ELIYANHPRGFALCSQRSATRSQYYVQVPLSEKV---EDWSDERFWTELKARLPSEVAEKLVTGP 259 (394)
T ss_dssp EEEEEESSCCSCS--SCEEECCTTCCEEEEEEETTEEEEEEEECTTCCG---GGCCHHHHHHHHHHTSCHHHHHHCCCCC
T ss_pred eEEEecCCCCCcc--ceEEEEcCCceEEEEecCCCcEEEEEEeCCCCCc---cccCHHHHHHHHHHhhCcccccccccCc
Confidence 4444332222111 1222233445555555555666666554332111 1111222222222 22222221111111
Q ss_pred ccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHH
Q 011888 154 EEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYER 233 (475)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~ 233 (475)
......+++.. ....+|..|||+|+|||||.|+|++|||+|+||+||.+|+++|..+++++ .+.+|+.|++
T Consensus 260 ~~~~~~~~~~~-~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~ai~da~~La~~L~~~~~~~--------~~~~L~~Y~~ 330 (394)
T 1k0i_A 260 SLEKSIAPLRS-FVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREG--------RGELLERYSA 330 (394)
T ss_dssp EEEEEEEEEEE-EEEECSEETTEEECGGGTEECCGGGTCHHHHHHHHHHHHHHHHHHHHHHC--------CGGGGGGHHH
T ss_pred ceeeEEEEhhh-hhccccccCCEEEEechhhcCCCcccchHHHHHHHHHHHHHHHHHHhccC--------chHHHHHHHH
Confidence 11111122222 23457889999999999999999999999999999999999999876532 2568999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCcc
Q 011888 234 ARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG 282 (475)
Q Consensus 234 ~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 282 (475)
+|++++..++..++....+.. .+....++.+.+|+..|..+...+
T Consensus 331 ~r~~~~~~~~~~s~~~~~~~~----~~~~~~~~~~~~r~~~l~~~~~~~ 375 (394)
T 1k0i_A 331 ICLRRIWKAERFSWWMTSVLH----RFPDTDAFSQRIQQTELEYYLGSE 375 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS----CCTTCCHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----cCCCCChHHHHHHHHHHHhhcCCH
Confidence 999999999888776544432 222333445667776665554433
No 13
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=99.94 E-value=2.4e-26 Score=240.85 Aligned_cols=229 Identities=17% Similarity=0.156 Sum_probs=149.1
Q ss_pred hHHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcC---C--cEEEecEEEEecCCCCcccccc-cCCCCCcccceEEE
Q 011888 2 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLEN---G--QCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCY 75 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~d---G--~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~~~~~ 75 (475)
.|+++|.+.+.+. |+++++|+++++++++|++++.+ | ++++||+||||||.+|.||+.+ ++.....+.+. .+
T Consensus 139 ~l~~~L~~~a~~~-v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~-~~ 216 (549)
T 2r0c_A 139 WLAPLLAEAVGER-LRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASSPTRKALGIDAPPRHRTQV-FR 216 (549)
T ss_dssp HHHHHHHHHHGGG-EECSEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEEEECCCTTCHHHHHHTCCCCBSSCCEE-EE
T ss_pred HHHHHHHHHHHHh-cccCcEEEEEEEeCCEEEEEEEECCCCCEEEEEeCEEEECCCCCcHHHHHcCCCCCCCcccce-EE
Confidence 4678888877666 99999999999999999998876 6 4799999999999999999998 44444444432 22
Q ss_pred EEEeccCCCC-----cCCcceEEEecCc-eEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHH
Q 011888 76 TGIADFVPAD-----IESVGYRVFLGHK-QYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLI 149 (475)
Q Consensus 76 ~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 149 (475)
...+.. +.. .......++..++ ..++++|..++. .|.+..+.+... ..++...+.+.+.+.. . +
T Consensus 217 ~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~-~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~--~---- 286 (549)
T 2r0c_A 217 NILFRA-PELRSLLGERAALFFFLMLSSSLRFPLRALDGRG-LYRLTVGVDDAS-KSTMDSFELVRRAVAF-D--T---- 286 (549)
T ss_dssp EEEEEC-TTHHHHHGGGCCSEEEEEEETTEEEEEEESSSSS-EEEEEEECSTTC-CSCCCHHHHHHHHBCS-C--C----
T ss_pred EEEEEC-CchHHhcCCCCceEEEEECCCCcEEEEEEECCCc-EEEEEecCCCCC-CCHHHHHHHHHHHhCC-C--C----
Confidence 222221 110 0111233444444 566677775543 233332322211 2223334444444432 0 0
Q ss_pred HhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHH
Q 011888 150 LATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALK 229 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~ 229 (475)
.........|.+.. ..+++|..|||+|+|||||.|+|++|||||+||+||.+|+|+|+.++++. ..+.+|+
T Consensus 287 -~~~~~~~~~~~~~~-~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~-------a~~~lL~ 357 (549)
T 2r0c_A 287 -EIEVLSDSEWHLTH-RVADSFSAGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLRGW-------AGPGLLA 357 (549)
T ss_dssp -CCEEEEEEEEEECC-EECSCSEETTEEECGGGTEECCCGGGHHHHHHHHHHHHHHHHHHHHHHTC-------SCTTTTH
T ss_pred -ceeEEEEecchhHh-hhHHhhcCCcEEEEccccccCCCccCCccccccHHHHHHHHHHHHHHcCC-------CCHHHHH
Confidence 00111122233322 34578999999999999999999999999999999999999999987642 2257899
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q 011888 230 SYERARRLRVAVIHGLARSAAV 251 (475)
Q Consensus 230 ~Y~~~R~~~~~~~~~~s~~~~~ 251 (475)
+|+++|++++..++..+.....
T Consensus 358 ~Y~~eR~~~a~~~~~~s~~~~~ 379 (549)
T 2r0c_A 358 TYEEERRPVAITSLEEANVNLR 379 (549)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988876443
No 14
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=99.94 E-value=4e-26 Score=238.92 Aligned_cols=233 Identities=20% Similarity=0.222 Sum_probs=150.5
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCC----eEEEEEcCC---cEEEecEEEEecCCCCcccccc-cCCCCCcccc
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGD----KVSVVLENG---QCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSG 71 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~----~v~v~~~dG---~~~~adlvVGADG~~S~vR~~l-~~~~~~~~~~ 71 (475)
.|+++|.+.+.. .+++++++|++++++++ +|++++.++ .+++||+||+|||.+|.||+.+ ++.....+.+
T Consensus 121 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S~vR~~lgi~~~~~~~~~ 200 (535)
T 3ihg_A 121 KLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLT 200 (535)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcchHHHHcCCCcCCCCccc
Confidence 467778777653 47999999999999998 999999887 6899999999999999999998 4444333332
Q ss_pred eEEEEEEeccCCCCc-CC-cceEEEecCceEEEEEeCCCCe-EEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHH
Q 011888 72 YTCYTGIADFVPADI-ES-VGYRVFLGHKQYFVSSDVGAGK-MQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDL 148 (475)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 148 (475)
......+....+... .. ..+..+..++...+++|..++. ..+++.. .+...........+.+.+.+.. .
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~l~~-------~ 272 (535)
T 3ihg_A 201 HMVGVIFDADLSGIMEPGTTGWYYLHHPEFKGTFGPTDRPDRHTLFVEY-DPDEGERPEDFTPQRCVELIGL-------A 272 (535)
T ss_dssp EEEEEEEECCGGGTSCTTCCEEEEEECSSCEEEEEECSSTTEEEEEEEE-CTTTTCCGGGCCHHHHHHHHHH-------H
T ss_pred eEEEEEEeccChhhccCCceEEEEEECCCceEEEEEecCCCEEEEEEee-CccccCccccCCHHHHHHHHHH-------H
Confidence 222111111111111 11 1223344555556666776533 3322222 2221111112223333332221 1
Q ss_pred HHh-C---CccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhH
Q 011888 149 ILA-T---DEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDI 224 (475)
Q Consensus 149 ~~~-~---~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~ 224 (475)
+.. . .......|++.. ...++|.+|||+|+|||||.|+|++|||+|+||+||.+|+|+|+.++++. ..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~-~~a~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~DA~~La~~La~~l~g~-------~~ 344 (535)
T 3ihg_A 273 LDAPEVKPELVDIQGWEMAA-RIAERWREGRVFLAGDAAKVTPPTGGMSGNAAVADGFDLAWKLAAVLQGQ-------AG 344 (535)
T ss_dssp HTCSSCCCEEEEEEEEEEEE-EEESCSEETTEEECTTTTEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTS-------SC
T ss_pred hCCCCCceeEEEeeEeeeeE-EEECccccCCEEEEecccccCCCccCCccccccccHHHHHHHHHHHhcCC-------Cc
Confidence 110 0 011122233322 24578999999999999999999999999999999999999999987642 23
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Q 011888 225 VSALKSYERARRLRVAVIHGLARSAA 250 (475)
Q Consensus 225 ~~~L~~Y~~~R~~~~~~~~~~s~~~~ 250 (475)
+.+|++|+++|++++..++..|....
T Consensus 345 ~~lL~~Ye~eR~p~a~~~~~~s~~~~ 370 (535)
T 3ihg_A 345 AGLLDTYEDERKVAAELVVAEALAIY 370 (535)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 67899999999999999998887543
No 15
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=99.93 E-value=2.7e-25 Score=236.86 Aligned_cols=230 Identities=17% Similarity=0.231 Sum_probs=144.5
Q ss_pred hHHHHHhhccCC--C--eEEcCcEEEEEEeeCC----eEEEEEc------CC--cEEEecEEEEecCCCCcccccc-cCC
Q 011888 2 TLQQILAKAVGD--E--IILNESNVIDFKDHGD----KVSVVLE------NG--QCYAGDLLIGADGIWSKVRKNL-FGP 64 (475)
Q Consensus 2 ~L~~~L~~~~~~--~--~i~~~~~v~~v~~~~~----~v~v~~~------dG--~~~~adlvVGADG~~S~vR~~l-~~~ 64 (475)
.|+++|.+.+.+ . .|+++++|++++++++ +|+|+++ +| ++++||+||||||.+|.||+.+ +..
T Consensus 142 ~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~ 221 (639)
T 2dkh_A 142 RVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSNVRRAIGRQL 221 (639)
T ss_dssp HHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchHHHHHhCCCC
Confidence 467777777642 2 7899999999998763 6888876 46 4799999999999999999998 332
Q ss_pred CCCcccceEEEEEEec--cCCCCcCCcceEEEecCceEEEEEeCCCC-eEEEEEEEeC--CCCCCCCCcchHHHHHHHhh
Q 011888 65 QEAIYSGYTCYTGIAD--FVPADIESVGYRVFLGHKQYFVSSDVGAG-KMQWYAFHKE--PAGGVDGPEGKKERLLKIFE 139 (475)
Q Consensus 65 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~ 139 (475)
....+.....+..+.. ..+. .. ....++. ++++++.+|..++ .+.|++.... +...........+++.+.+.
T Consensus 222 ~g~~~~~~~~~~~~~~~~~~p~-~~-~~~~~~~-~~g~~~~~P~~~~~~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 298 (639)
T 2dkh_A 222 VGDSANQAWGVMDVLAVTDFPD-VR-YKVAIQS-EQGNVLIIPREGGHLVRFYVEMDKLDADERVASRNITVEQLIATAQ 298 (639)
T ss_dssp EECSCSCCEEEEEEEEEECCTT-TT-SEEEEEE-TTEEEEEEECTTSSCEEEEEECC-----------CCCHHHHHHHHH
T ss_pred CCCCccceEEEEEEEEccCCCc-cc-eeEEEEc-CCceEEEEEcCCCcEEEEEEECCCcCcccccccCCCCHHHHHHHHH
Confidence 2222322222221111 1111 11 1122223 5566777888777 5555544322 11100111123344443332
Q ss_pred CCChHHHHHHHh--CCccceeecccccC--CCCcccc------------CCcEEEEcccccccCCccccchhhhHHHHHH
Q 011888 140 GWCDNVVDLILA--TDEEAILRRDIYDR--TPIFTWG------------RGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQ 203 (475)
Q Consensus 140 ~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~------------~grvvLvGDAAH~~~P~~GqG~n~al~Da~~ 203 (475)
. .+.. .....+..+..+.. ....+|. .|||+|+|||||.|+|++|||||+||+||.+
T Consensus 299 ~-------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~gRV~L~GDAAH~~~P~~GqG~n~ai~DA~n 371 (639)
T 2dkh_A 299 R-------VLHPYKLEVKNVPWWSVYEIGQRICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNFSMQDSFN 371 (639)
T ss_dssp H-------HHTTSCEEEEEEEEEEEECCCCEECSCSBSCCCSSCCTTSCCCCEEECGGGTEECCGGGCCTTHHHHHHHHH
T ss_pred H-------HhCcccCcceeeeEEEecccccchhhhhhccccccccccCccCcEEEEecccccCCCcccccchhhHHHHHH
Confidence 1 1111 00011222333321 2345676 8999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 011888 204 LAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 248 (475)
Q Consensus 204 La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~ 248 (475)
|+|+|+.++++. ..+.+|++|+++|++++..++..++.
T Consensus 372 LawkLa~vl~g~-------a~~~lL~~Ye~eR~~~a~~~~~~s~~ 409 (639)
T 2dkh_A 372 LGWKLAAVLRKQ-------CAPELLHTYSSERQVVAQQLIDFDRE 409 (639)
T ss_dssp HHHHHHHHHTTS-------BCGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988642 23678999999999999998887764
No 16
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=99.92 E-value=8.9e-26 Score=226.19 Aligned_cols=243 Identities=18% Similarity=0.201 Sum_probs=152.8
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccccccc---CCCCCcccceEEEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF---GPQEAIYSGYTCYT 76 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~---~~~~~~~~~~~~~~ 76 (475)
+|.++|.+.+.. ..++++++|++++.. ++++||+||||||.+|. |+.+. +.....+....+|.
T Consensus 99 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-----------~~~~ad~vV~AdG~~S~-R~~l~~~~g~~~~~~~~~~~~~ 166 (381)
T 3c4a_A 99 GLVHALRDKCRSQGIAIRFESPLLEHGEL-----------PLADYDLVVLANGVNHK-TAHFTEALVPQVDYGRNKYIWY 166 (381)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCCCSGGGC-----------CGGGCSEEEECCGGGGG-TCCSSGGGCCCCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEeCCEeccchhc-----------ccccCCEEEECCCCCch-HHhhhhhcCCCcccCCccEEEE
Confidence 467788877653 479999999988642 13589999999999999 99873 22222223445555
Q ss_pred EEeccCCCCcCCcceEE-EecCceE-EEEEeCCCCeEEEEEEEeCCC---CCCC--CCcchHHHHHHHhhCCChHHHHHH
Q 011888 77 GIADFVPADIESVGYRV-FLGHKQY-FVSSDVGAGKMQWYAFHKEPA---GGVD--GPEGKKERLLKIFEGWCDNVVDLI 149 (475)
Q Consensus 77 ~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~~~~~~~~~~~~ 149 (475)
++.... +.....+ +.+.+.. +..+|.+++...+++...... .... ..+...+.+.+.|..|.+.. +++
T Consensus 167 ~~~~~~----~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~l~ 241 (381)
T 3c4a_A 167 GTSQLF----DQMNLVFRTHGKDIFIAHAYKYSDTMSTFIVECSEETYARARLGEMSEEASAEYVAKVFQAELGGH-GLV 241 (381)
T ss_dssp EESSCC----SSEEEEEEEETTEEEEEEEEECSSSCEEEEEEECHHHHHHTTSSSSCHHHHHHHHHHHTHHHHTTC-CCB
T ss_pred ecCCCC----CcceeeEeeCCCcEEEEEEEEecCCeEEEEEECCccccccCCcccCChHHHHHHHHHHhcccCCCc-hhh
Confidence 543211 1111111 2234433 335788777654433321100 1110 11233455666665543221 111
Q ss_pred HhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHH
Q 011888 150 LATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALK 229 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~ 229 (475)
. ... ..|+++...+.++|+.|||+|+|||||+|+|++|||+|+||+||.+|+++|... .+.+.+|+
T Consensus 242 ~---~~~-~~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~----------~~~~~aL~ 307 (381)
T 3c4a_A 242 S---QPG-LGWRNFMTLSHDRCHDGKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCTE----------DGVPAALK 307 (381)
T ss_dssp C---CTT-TCSEEEEECCCSCSEETTEEECGGGTCCCCGGGCCHHHHHHHHHHHHHHHHHHS----------SSHHHHHH
T ss_pred c---CCC-cceeeeccccCCCcccCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHhcc----------ccHHHHHH
Confidence 1 111 134455445678999999999999999999999999999999999999999873 24588999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCC
Q 011888 230 SYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPH 277 (475)
Q Consensus 230 ~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~ 277 (475)
.|+++|++++..++..++...........++. +++..+.|++++..
T Consensus 308 ~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~ 353 (381)
T 3c4a_A 308 RFEERALPLVQLFRGHADNSRVWFETVEERMH--LSSAEFVQSFDARR 353 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSCC--------CHHHHGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhchhhhhc--CCHHHHHHHHhhcc
Confidence 99999999999999988876654443334444 36778888888776
No 17
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=99.90 E-value=2.7e-23 Score=212.93 Aligned_cols=237 Identities=16% Similarity=0.085 Sum_probs=152.5
Q ss_pred hHHHHHhhccC--CCeEEcCcEEEEEEeeCCeEE-EEEc---CCc--EEEecEEEEecCCCCcccccccCCC---CCcc-
Q 011888 2 TLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLE---NGQ--CYAGDLLIGADGIWSKVRKNLFGPQ---EAIY- 69 (475)
Q Consensus 2 ~L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~-v~~~---dG~--~~~adlvVGADG~~S~vR~~l~~~~---~~~~- 69 (475)
+|.+.|.+.+. ..+++++++|++++.++++|. |++. +|+ +++||+||+|||.+|.+|+.+.... .+.+
T Consensus 101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~vr~~l~~~~~~~~~~~~ 180 (453)
T 3atr_A 101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSFRSKLPPELPITEDLDD 180 (453)
T ss_dssp HHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTTGGGSCTTSGGGCCCCG
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhhHHhcCCCCCcccCCCc
Confidence 46677777664 347999999999998888765 6554 676 7999999999999999999883221 1222
Q ss_pred -cceEEEEEEeccCCCCcCCcceEEEec----CceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChH
Q 011888 70 -SGYTCYTGIADFVPADIESVGYRVFLG----HKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDN 144 (475)
Q Consensus 70 -~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 144 (475)
....++...+.......+.....++++ ++.+++.+|..++...+.+........ ....+.+.+.+..+.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~~~~~~----~~~~~~~~~~l~~~~~~ 256 (453)
T 3atr_A 181 KDADVAYREVLLTKEDIEDHDYLRIFIDQETSPGGYWWYFPKGKNKVNVGLGIQGGMGY----PSIHEYYKKYLDKYAPD 256 (453)
T ss_dssp GGEEEEEEEEEEESSCCTTTTEEEEECCTTTSTTSCEEEEEEETTEEEEEEEEESSSCC----CCHHHHHHHHHHHHCTT
T ss_pred ccceeeeEEEEecCCCccCCCeEEEEECCCCCCCcEEEEEECCCCeEEEEEEecCCCCC----CCHHHHHHHHHHhhhhh
Confidence 223455544332111112222345553 466788889888877665554432111 11233343333221111
Q ss_pred HHHHHHhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhH
Q 011888 145 VVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDI 224 (475)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~ 224 (475)
+. .........+.+....+.++|+.+|++|+|||||.++|++|||+|+||+||..||++|..+++.+ ...
T Consensus 257 ~~----~~~~~~~~~~~~p~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l~~~l~~~------~~~ 326 (453)
T 3atr_A 257 VD----KSKLLVKGGALVPTRRPLYTMAWNGIIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAFETG------DFS 326 (453)
T ss_dssp EE----EEEEEEEEEEEEECSSCCSCSEETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHT------CCS
T ss_pred cC----CCeEEeccceeccCCCCCCceecCCEEEEeCcccCCCCCccccHHHHHHHHHHHHHHHHHHHHcC------Ccc
Confidence 00 00000111112222345678999999999999999999999999999999999999999887642 112
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 011888 225 VSALKSYERARRLRVAVIHGLARSAAVM 252 (475)
Q Consensus 225 ~~~L~~Y~~~R~~~~~~~~~~s~~~~~~ 252 (475)
+++|+.|+++|++++...+..+.....+
T Consensus 327 ~~~L~~Y~~~r~~~~~~~~~~~~~~~~~ 354 (453)
T 3atr_A 327 ASGLWDMNICYVNEYGAKQASLDIFRRF 354 (453)
T ss_dssp TTTTTHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999998887766655443
No 18
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=99.89 E-value=4.5e-22 Score=206.90 Aligned_cols=238 Identities=13% Similarity=0.125 Sum_probs=156.8
Q ss_pred hHHHHHhhccC--CCeEEcCcEEEEEEeeCCe---EEEEEcCCc--EEEecEEEEecCCCCcccccccCCCCCcccceEE
Q 011888 2 TLQQILAKAVG--DEIILNESNVIDFKDHGDK---VSVVLENGQ--CYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTC 74 (475)
Q Consensus 2 ~L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~---v~v~~~dG~--~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~~ 74 (475)
.|.+.|.+.+. ..+++++++|+++..+++. |++...+|+ +++||+||+|||.+|.+|+.+.......+....+
T Consensus 112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~vr~~lg~~~~~~~~~~~a 191 (512)
T 3e1t_A 112 RFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAVGERVYSRFFQNVA 191 (512)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTCSSGGGTCCEEECSTTCEEE
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcchHHHHHcCCCccCchhcceE
Confidence 35667777654 3479999999999998875 455556785 8999999999999999999982111122233455
Q ss_pred EEEEecc---CCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHh
Q 011888 75 YTGIADF---VPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILA 151 (475)
Q Consensus 75 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 151 (475)
+.+++.. .+.+.....+.. ..++++++.+|..++...+.+........ ..... .++..+.+..+.+.+.+.+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~~Pl~~~~~~vg~~~~~~~~~-~~~~~-~~~~~~~~l~~~p~~~~~l~~ 268 (512)
T 3e1t_A 192 LYGYFENGKRLPAPRQGNILSA-AFQDGWFWYIPLSDTLTSVGAVVSREAAE-AIKDG-HEAALLRYIDRCPIIKEYLAP 268 (512)
T ss_dssp EEEEEESCCCCSTTCTTSEEEE-EETTEEEEEEECSSSEEEEEEEEEHHHHT-TTSSC-HHHHHHHHHHTSHHHHHHHTT
T ss_pred EEEEecCCccCCCCCcCceEEE-EeCCceEEEEEeCCCeEEEEEEecHHHhh-hhcCC-HHHHHHHHHHhCchHHHHHhc
Confidence 5554431 122222222333 34556788889998877766655432111 01112 233334444577777777654
Q ss_pred CCccc---eeeccccc--CCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHH
Q 011888 152 TDEEA---ILRRDIYD--RTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVS 226 (475)
Q Consensus 152 ~~~~~---~~~~~~~~--~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~ 226 (475)
..... +...++.. .....+|..+|++|||||||.|+|+.|||+|+|++||..|+++|...+.+. .+...
T Consensus 269 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~vvlvGDAAh~~~P~~GqG~~~Al~dA~~La~~L~~~l~~~------~~~~~ 342 (512)
T 3e1t_A 269 ATRVTTGDYGEIRIRKDYSYCNTSFWKNGMALVGDAACFVDPVFSSGVHLATYSALLVARAINTCLAGE------MSEQR 342 (512)
T ss_dssp CEECCSSTTSSCEEEESCCEEESCSBCSSEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHTTTC------SCHHH
T ss_pred CccccccccccceeeccccccccccccCCEEEEechhhcCCCccccCHHHHHHHHHHHHHHHHHHHcCC------ccHHH
Confidence 32110 00000100 013457788999999999999999999999999999999999999887542 45678
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 011888 227 ALKSYERARRLRVAVIHGLARS 248 (475)
Q Consensus 227 ~L~~Y~~~R~~~~~~~~~~s~~ 248 (475)
+|+.|+++|+++...+..+...
T Consensus 343 aL~~Ye~~~~~~~~~~~~~~~~ 364 (512)
T 3e1t_A 343 CFEEFERRYRREYGNFYQFLVA 364 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887766553
No 19
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=99.89 E-value=1.2e-21 Score=196.31 Aligned_cols=227 Identities=15% Similarity=0.080 Sum_probs=142.4
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEE--cCC--cEEEecEEEEecCCCCccccccc-CCCCCcccceEE
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVL--ENG--QCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTC 74 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~--~dG--~~~~adlvVGADG~~S~vR~~l~-~~~~~~~~~~~~ 74 (475)
.|++.|.+.+.. .+++++++++++..+++.+.... .+| .+++||+||||||++|.||+.+. ......+.....
T Consensus 103 ~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~vr~~~g~~~~~~~~~~~~~ 182 (397)
T 3oz2_A 103 KFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFESEFGRWAGLKSVILARNDIIS 182 (397)
T ss_dssp HHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHHTCGGGCCCGGGEEE
T ss_pred HHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCccccHHHHHcCCCcccccceeeee
Confidence 466777776543 47899999999998888765332 233 36899999999999999999983 223333433333
Q ss_pred EEEEeccCCCCcCCcceEEEec---CceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHh
Q 011888 75 YTGIADFVPADIESVGYRVFLG---HKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILA 151 (475)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 151 (475)
..... ....+.+.....++.+ ++.+++.+|.+++...+.+....... . .........+.+....+.+ ..
T Consensus 183 ~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~--~-~~~~~~~~l~~~~~~~~~l----~~ 254 (397)
T 3oz2_A 183 ALQYR-MINVDVDPDYTDFYLGSIAPAGYIWVFPKGEGMANVGIGSSINWI--H-NRFELKNYLDRFIENHPGL----KK 254 (397)
T ss_dssp EEEEE-EESCCCCTTEEEEECSTTSTTEEEEEEEEETTEEEEEEEEETTTS--C-SHHHHHHHHHHHHHTCHHH----HT
T ss_pred eEEEE-eeccccCcccceeeeeccCCCceEEEeecccceeEEEEeeccchh--h-hhhhHHHHHHHHHHhCccc----cc
Confidence 22221 1122233333445543 45677777887776655443332211 1 1112222222222222322 12
Q ss_pred CCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHH
Q 011888 152 TDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSY 231 (475)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y 231 (475)
..........+.......+|+.+|++|+|||||.++|++|||+|+||+||..||++|.++++.+ ...+.+|+.|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~~l~~~------~~~~~~L~~Y 328 (397)
T 3oz2_A 255 GQDIQLVTGGVSVSKVKMPITMPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAIESN------DYSPQMMQKY 328 (397)
T ss_dssp SEEEEEEEEEEECCCCCSCCEETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHT------CCSHHHHHHH
T ss_pred cceeeeeeccccccCcccceeeeeEEEcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHcC------CccHHHHHHH
Confidence 2222222223333333456788999999999999999999999999999999999999998764 2347899999
Q ss_pred HHHhhHHHHHH
Q 011888 232 ERARRLRVAVI 242 (475)
Q Consensus 232 ~~~R~~~~~~~ 242 (475)
++.++.+....
T Consensus 329 e~~~~~~~~~~ 339 (397)
T 3oz2_A 329 EKLIKERFERK 339 (397)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988776543
No 20
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=99.88 E-value=2.5e-21 Score=194.53 Aligned_cols=234 Identities=14% Similarity=0.036 Sum_probs=152.1
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEE-EEEc---CCcEEEecEEEEecCCCCccccccc-CC-CC-Ccccce
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVS-VVLE---NGQCYAGDLLIGADGIWSKVRKNLF-GP-QE-AIYSGY 72 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~-v~~~---dG~~~~adlvVGADG~~S~vR~~l~-~~-~~-~~~~~~ 72 (475)
.|.+.|.+.+.. .+++++++|++++.++++++ |++. ++++++||+||+|||.+|.+|+.+. .. .. +....
T Consensus 103 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~a~~vV~A~G~~s~~~~~~g~~~~~~~~~~~~- 181 (397)
T 3cgv_A 103 KFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFESEFGRWAGLKSVILARNDII- 181 (397)
T ss_dssp HHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHHTCCTTCCCGGGEE-
T ss_pred HHHHHHHHHHHhCCCEEEECCEEEEEEEeCCEEEEEEEEECCeEEEEEcCEEEECCCcchHhHHhcCCCccCCChhhee-
Confidence 356677766543 47999999999999888877 7773 4568999999999999999999883 22 11 21111
Q ss_pred EEEEEEeccCCCCcCCcceEEEe---cCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHH
Q 011888 73 TCYTGIADFVPADIESVGYRVFL---GHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLI 149 (475)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 149 (475)
.++...... ...+.....+++ .++.+++.+|.+++...+.+....... . ......+..+.+..+.+.+
T Consensus 182 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~---- 252 (397)
T 3cgv_A 182 SALQYRMIN--VDVDPDYTDFYLGSIAPAGYIWVFPKGEGMANVGIGSSINWI--H-NRFELKNYLDRFIENHPGL---- 252 (397)
T ss_dssp EEEEEEEES--CCCCTTEEEEECSTTSTTEEEEEEEEETTEEEEEEEEETTTC--S-CHHHHHHHHHHHHHTCHHH----
T ss_pred EEEEEEecc--CCCCCCcEEEEeCCcCCCceEEEEECCCCeEEEEEEeccccc--c-CCCCHHHHHHHHHHhCcCC----
Confidence 222222221 122333445554 356778888988887666555443221 1 1122223333333333322
Q ss_pred HhCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHH
Q 011888 150 LATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALK 229 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~ 229 (475)
............+.......+|..+|++|+|||||.++|++|||+|+|++||..|+++|.+++..+ ...+.+|+
T Consensus 253 ~~~~~~~~~~~~~p~~~~~~~~~~~~v~liGDAa~~~~P~~G~G~~~a~~~a~~la~~l~~~~~~~------~~~~~~l~ 326 (397)
T 3cgv_A 253 KKGQDIQLVTGGVSVSKVKMPITMPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAIESN------DYSPQMMQ 326 (397)
T ss_dssp HTSEEEEEEEEEEECCCCCSCCEETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHT------CCSHHHHH
T ss_pred CCCeEEeeeeeeeecCCCccceeeCCEEEEEccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC------CccHHHHH
Confidence 111111111222222234668889999999999999999999999999999999999999887543 23468899
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q 011888 230 SYERARRLRVAVIHGLARSAAV 251 (475)
Q Consensus 230 ~Y~~~R~~~~~~~~~~s~~~~~ 251 (475)
.|+++|+++....+..++.+..
T Consensus 327 ~Y~~~~~~~~~~~~~~~~~~~~ 348 (397)
T 3cgv_A 327 KYEKLIKERFERKHLRNWVAKE 348 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988877777665443
No 21
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=99.86 E-value=4e-21 Score=201.92 Aligned_cols=239 Identities=13% Similarity=0.168 Sum_probs=156.6
Q ss_pred hHHHHHhhccC--CCeEEcCcEEEEEEee-CCeEEEEEc-CC--cEEEecEEEEecCCCCcccccccC-CCCCcccceEE
Q 011888 2 TLQQILAKAVG--DEIILNESNVIDFKDH-GDKVSVVLE-NG--QCYAGDLLIGADGIWSKVRKNLFG-PQEAIYSGYTC 74 (475)
Q Consensus 2 ~L~~~L~~~~~--~~~i~~~~~v~~v~~~-~~~v~v~~~-dG--~~~~adlvVGADG~~S~vR~~l~~-~~~~~~~~~~~ 74 (475)
.|.+.|.+.+. ...++++++|++++.+ ++.+.|++. +| ++++||+||+|||.+|.+|+.+.. .....+.+...
T Consensus 129 ~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S~lr~~lg~~~~~~~~~~~av 208 (591)
T 3i3l_A 129 EFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKLGVRQYDEFYRNFAV 208 (591)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGCHHHHHHTCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcchhHHHcCCCCCCccccceEE
Confidence 35667776654 3479999999999875 566788887 67 579999999999999999998832 11222333222
Q ss_pred EEEEecc--CCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhC
Q 011888 75 YTGIADF--VPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILAT 152 (475)
Q Consensus 75 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 152 (475)
+..+... .+.+.....+ ....++++++.+|..++.+.+.+........ .......+.+.+.+..+.+.+...+...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~-~~~~~~G~~w~iPl~~~~~sv~~~~~~~~~~-~l~~~~~~~~~~~l~~~~p~l~~~l~~~ 286 (591)
T 3i3l_A 209 WSYFKLKDPFEGDLKGTTY-SITFEDGWVWMIPIKDDLYSVGLVVDRSKSA-EVREQGADAFYSSTLAKCAKAMDILGGA 286 (591)
T ss_dssp EEEEECCCSCCSTTTTCEE-EEEETTEEEEEEECSSSEEEEEEEEEGGGHH-HHHHHCHHHHHHHHHTTCHHHHHHHTTC
T ss_pred EEEEecCccccCCCCCceE-EEEcCCcEEEEEECCCCeEEEEEEcCHHHHh-hhccCCHHHHHHHHHHhCHHHHHHHhcC
Confidence 2222111 1122222222 3344667788889988876665554332100 0001123445555566677776666533
Q ss_pred Cccc-eeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHH
Q 011888 153 DEEA-ILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSY 231 (475)
Q Consensus 153 ~~~~-~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y 231 (475)
.... ....+.+. ....+|..+|++|||||||.++|+.|||+|+|++||..|+++|...+..+ ...+.+++.|
T Consensus 287 ~~~~~~~~~~~~~-~~~~~~~~~rvvLIGDAAh~~~Pl~GqGinlAl~dA~~LA~~L~~~l~~~------~~~~~al~~Y 359 (591)
T 3i3l_A 287 EQVDEVRIVQDWS-YDTEVFSADRFFLCGDAACFTDPLFSQGVHLASQSAVSAAAAIDRITRHG------DEKDAVHAWY 359 (591)
T ss_dssp EECSCCEEEEEEE-EEESCSEETTEEECGGGTCBCCGGGCCHHHHHHHHHHHHHHHHHHHHHCG------GGHHHHHHHH
T ss_pred ccccCceEecccc-cchhhcccCCEEEEccccccCCCcccccHHHHHHHHHHHHHHHHHHHhCC------chHHHHHHHH
Confidence 2111 11111111 12357888999999999999999999999999999999999999887642 4567899999
Q ss_pred HHHhhHHHHHHHHHHHHH
Q 011888 232 ERARRLRVAVIHGLARSA 249 (475)
Q Consensus 232 ~~~R~~~~~~~~~~s~~~ 249 (475)
++.|+++...+..+....
T Consensus 360 ~~~~~~~~~~i~~~~~~~ 377 (591)
T 3i3l_A 360 NRTYREAYEQYHQFLASF 377 (591)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999887776653
No 22
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=99.84 E-value=4.6e-20 Score=194.25 Aligned_cols=232 Identities=12% Similarity=-0.003 Sum_probs=139.5
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCC-eEE-EEEc------CC---------cEEEecEEEEecCCCCccccccc
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGD-KVS-VVLE------NG---------QCYAGDLLIGADGIWSKVRKNLF 62 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~-~v~-v~~~------dG---------~~~~adlvVGADG~~S~vR~~l~ 62 (475)
+|.+.|.+.+.+ .+|+++++|+++..+++ .|. |++. +| .+++||+||+|||.+|.+|+.+.
T Consensus 145 ~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~ 224 (584)
T 2gmh_A 145 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLY 224 (584)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCchHHHHHH
Confidence 466777776643 47999999999998764 354 7665 33 68999999999999999999872
Q ss_pred ---CCC---CCcccceEEEEEEeccCCCCcCCcceEEEec------CceEEEEEeCC--CCeEEEEEEEeCCCCCCCCCc
Q 011888 63 ---GPQ---EAIYSGYTCYTGIADFVPADIESVGYRVFLG------HKQYFVSSDVG--AGKMQWYAFHKEPAGGVDGPE 128 (475)
Q Consensus 63 ---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 128 (475)
+.. .+.+.+ ..+..+...............+.+ .....++++.. ++.+.+.+......... ..
T Consensus 225 ~~~gl~~~~~p~~~g-~g~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~gg~~~~~~~~~~~~~~vg~~~~~~~~~~--~~ 301 (584)
T 2gmh_A 225 KKFDLRANCEPQTYG-IGLKELWVIDEKKWKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEPLLALGFVVGLDYQNP--YL 301 (584)
T ss_dssp HHTTTTTTSCCCCEE-EEEEEEEECCGGGCCTTEEEEEEETTSCTTSCEEEEEEECCSSSCEEEEEEEEETTCCCT--TC
T ss_pred HHhCCCCCCCchhHH-hhhhhheecCcccccCCeEEEEEeccccCCcCCceEEEEecCCCCeEEEEEEEecCcccc--cC
Confidence 222 122222 122222211111111212222221 11223455666 66666665554322111 11
Q ss_pred chHHHHHHHhhCCChHHHHHHHhCCccceeecccc--cCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHH
Q 011888 129 GKKERLLKIFEGWCDNVVDLILATDEEAILRRDIY--DRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAV 206 (475)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~ 206 (475)
...+.+.++.. .+.+..++.......+....++ .....++|..+|++|||||||.|+|+.|||+|+||+||.+||+
T Consensus 302 ~~~~~l~~~~~--~p~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~ 379 (584)
T 2gmh_A 302 SPFREFQRWKH--HPSIKPTLEGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAE 379 (584)
T ss_dssp CHHHHHHHHTT--STTTHHHHTTCEEEEEEEEEEECCGGGGCCCCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHh--ChHHHHHhCCCeEEEecceEccCCCcccCCccccCCEEEEcccccccCccccccHHHHHHHHHHHHH
Confidence 23445544332 3555666543322111111122 1234568999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCChhhHHHH---HHHHHHHhhHH-HHHHH
Q 011888 207 ELEKACKKSNESKTPIDIVSA---LKSYERARRLR-VAVIH 243 (475)
Q Consensus 207 ~L~~~~~~~~~~~~~~~~~~~---L~~Y~~~R~~~-~~~~~ 243 (475)
+|..+++.+ . ...+++ |+.|+++|+++ +.+.+
T Consensus 380 ~L~~~~~~g----~-~~~~~a~~~L~~Ye~~r~~~~v~~~l 415 (584)
T 2gmh_A 380 SIFNQLTSE----N-LQSKTIGLHVTEYEDNLKNSWVWKEL 415 (584)
T ss_dssp HHHHHHTCC----C-CCCSSSSCCCTHHHHHHHTSHHHHHH
T ss_pred HHHHHHHcC----C-cchhhhhhhHHHHHHHHHHhHHHHHH
Confidence 999987532 0 011343 89999999987 45433
No 23
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=157.79 Aligned_cols=101 Identities=24% Similarity=0.388 Sum_probs=79.6
Q ss_pred CCcEEEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEE-----------ECCeEEEE
Q 011888 338 NGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISY-----------KDGAFYLI 406 (475)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~-----------~~~~~~i~ 406 (475)
...|.|....++. ..+.+.|. ....++|||++.|| |++++++|||+||+|.+ .++.|+|+
T Consensus 18 ~~~~~L~v~k~g~-~~~~~~L~---~~~~~~IGR~~~~d-----i~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~ 88 (130)
T 4h87_A 18 TAPYSLETLKGGT-ILGTRSLK---GTSYCLFGRLSGCD-----VCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLY 88 (130)
T ss_dssp CSCCEEEEEETTE-EEEEEECT---TCSEEEEESSTTSS-----EECCCTTSCSSCEEEEEBCCCCCC------CCEEEE
T ss_pred CCCEEEEEEECCe-eeeeEEeC---CCceEEEcCCcCCC-----EEeCCCCcchhcEEEEEecccCccceeccCCcceEe
Confidence 3456665554432 22667776 23347999999887 99999999999999965 35679999
Q ss_pred EcCCccceeeccCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEE
Q 011888 407 DLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVK 453 (475)
Q Consensus 407 D~~S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~ 453 (475)
|++|+|||||||+ +|.++.++.|++||+|+||..+ ..|.++
T Consensus 89 Dl~StNGT~vNg~-----ri~~~~~~~L~~GD~I~~G~st-r~yvl~ 129 (130)
T 4h87_A 89 DLGSTHGTFLNKT-----RIPPRTYCRVHVGHVVRFGGST-RLFILQ 129 (130)
T ss_dssp ECSCSSCEEETTE-----ECCTTCCEECCTTCEEEETTCS-EEEEEE
T ss_pred eCCCCCceEECCE-----ECCCCceeECCCCCEEEECCce-EEEEEc
Confidence 9999999999999 9999999999999999999973 356553
No 24
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.82 E-value=4.8e-20 Score=153.94 Aligned_cols=91 Identities=22% Similarity=0.297 Sum_probs=80.2
Q ss_pred ccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEE--CCeEEEEEcCCccceeeccCCCceee--cC
Q 011888 352 VSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DGAFYLIDLQSEHGTYVTDNEGRRYR--VS 427 (475)
Q Consensus 352 ~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~--~~~~~i~D~~S~nGt~vn~~~~~~~~--~~ 427 (475)
..+.+.|. .++ ++|||.++|+ |+++++.|||.||+|.++ ++.|+|+|++|+|||||||+ + |.
T Consensus 36 ~g~~~~L~-~~~---~~IGR~~~~d-----i~l~d~~VSr~HA~i~~~~~~~~~~l~Dl~S~NGT~vNg~-----~i~l~ 101 (132)
T 3va4_A 36 PERDFPLY-LGK---NVVGRSPDCS-----VALPFPSISKQHAVIEISAWNKAPILQDCGSLNGTQIVKP-----PRVLP 101 (132)
T ss_dssp SCEEEEEC-SEE---EEEESSTTSS-----EECCCTTSCTTCEEEEECSTTSCCEEEECSCSSCEEETTT-----TEEEC
T ss_pred CceEEEEC-CCC---EEEccCCCCC-----EEeCCCCcChhHEEEEEEcCCCEEEEEECCCCCCeEECCE-----EcccC
Confidence 34889999 444 9999999887 999999999999999997 68899999999999999998 5 78
Q ss_pred CCCcEEeCCCCEEEeCCCceEEEEEEEeccCC
Q 011888 428 SNFPARFRPSDTIEFGSDKKAIFRVKVIGTPP 459 (475)
Q Consensus 428 ~~~~~~l~~gd~i~~g~~~~~~~~~~~~~~~~ 459 (475)
++.++.|++||+|+||++ .|+|.....+|
T Consensus 102 ~~~~~~L~~GD~I~lG~~---~l~f~~~~~p~ 130 (132)
T 3va4_A 102 PGVSHRLRDQELILFADF---PCQYHRLDVPP 130 (132)
T ss_dssp TTCCEECCTTCEEEETTE---EEEEEECCCCC
T ss_pred CCCEEECCCCCEEEECCE---EEEEEECCCCC
Confidence 888999999999999999 67777765554
No 25
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=99.81 E-value=5.4e-19 Score=179.05 Aligned_cols=231 Identities=15% Similarity=0.110 Sum_probs=145.3
Q ss_pred hHHHHHhhccC--CCeEEcCcEEEEEEeeCCeE--EEEEcCCc--EEEecEEEEecCCCCccccccc-CCCCCcccceEE
Q 011888 2 TLQQILAKAVG--DEIILNESNVIDFKDHGDKV--SVVLENGQ--CYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTC 74 (475)
Q Consensus 2 ~L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v--~v~~~dG~--~~~adlvVGADG~~S~vR~~l~-~~~~~~~~~~~~ 74 (475)
.|.+.|.+.+. ..+++++++|++++.+++++ .+...+|+ +++||+||+|||.+|.+|+.+. ......+.....
T Consensus 107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s~l~~~~g~~~~~~~~~~~~~ 186 (421)
T 3nix_A 107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRMFGLDKPSGFESRRTL 186 (421)
T ss_dssp HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGCHHHHHTTCEECCSSCCCEEE
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCchhhHHhcCCCCCCcCCCcEEE
Confidence 35667776654 34799999999999887775 45557887 7999999999999999999873 222222333233
Q ss_pred EEEEeccCCC-CcCCcceEEEe---cCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHH
Q 011888 75 YTGIADFVPA-DIESVGYRVFL---GHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLIL 150 (475)
Q Consensus 75 ~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 150 (475)
+..+....+. ........++. .++.+++.+|.+++...+.+........ ... ...+++.+.+..+.+.+...+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~~~~~~-~~~-~~~~~~l~~~~~~~p~~~~~l~ 264 (421)
T 3nix_A 187 FTHIKDVKRPVAAEMEGNRITAVVHKPKVWIWVIPFSNGNTSVGFVGEPSYFD-EYT-GTPEERMRAMIANEGHIAERFK 264 (421)
T ss_dssp EEEEECTTCCC----CCSEEEEEEEETTEEEEEEECTTSEEEEEEEECHHHHT-TSC-SCHHHHHHHHHHTCTTTHHHHT
T ss_pred EEEECCCcCCCccCCCCeEEEEEeCCCCEEEEEEEECCCCEEEEEEecHHHhh-hcC-CCHHHHHHHHHHhCcHHHHHHh
Confidence 3322221111 11111112222 2556788889988877665544321100 011 1234444444445666666665
Q ss_pred hCCcc-ceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHH
Q 011888 151 ATDEE-AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALK 229 (475)
Q Consensus 151 ~~~~~-~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~ 229 (475)
..... .+..++.+. ....+|..++++|+|||||.++|+.|||+|+|++||..|+++|.+.++++ . ...++
T Consensus 265 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~lvGDAa~~~~P~~G~G~~~A~~~a~~la~~l~~~~~~~-----~---~~~~~ 335 (421)
T 3nix_A 265 SEEFLFEPRTIEGYA-ISASKLYGDGFVLTGNATEFLDPIFSSGATFAMESGSKGGKLAVQFLKGE-----E---VNWEK 335 (421)
T ss_dssp TCCBSSCCEEEECCC-BEESCSEETTEEECGGGTCBCCSTTCCHHHHHHHHHHHHHHHHHHHHTTC-----C---CCHHH
T ss_pred cCccccCceeecccc-eeeeeeccCCEEEecccccccCCcccccHHHHHHHHHHHHHHHHHHhcCC-----c---hhHHH
Confidence 44321 122222222 23457788999999999999999999999999999999999999987642 1 13567
Q ss_pred HHHHHhhHHHHHHH
Q 011888 230 SYERARRLRVAVIH 243 (475)
Q Consensus 230 ~Y~~~R~~~~~~~~ 243 (475)
.|++.++.......
T Consensus 336 ~y~~~~~~~~~~~~ 349 (421)
T 3nix_A 336 DFVEHMMQGIDTFR 349 (421)
T ss_dssp HTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877665443
No 26
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.80 E-value=2.5e-19 Score=144.66 Aligned_cols=99 Identities=22% Similarity=0.445 Sum_probs=80.9
Q ss_pred CCcEEEEecCCCCcccccEEEeecCCCCCEEecCCC-CCCCCCceeeeCCccccccceEEEEE-CCeEEEEEcCCcccee
Q 011888 338 NGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSES-HEDFSRTSIVIPSAQVSKMHARISYK-DGAFYLIDLQSEHGTY 415 (475)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~-~~~~~~~~i~~~~~~vSr~Ha~i~~~-~~~~~i~D~~S~nGt~ 415 (475)
.+.|.|....+.. ..+.+.|. . +..++|||++ .|+ |+++++.|||.||+|.++ ++.|+|+|++|+||||
T Consensus 2 ~~~~~L~v~~G~~-~g~~~~l~-~--~~~~~iGR~~~~~d-----i~l~d~~vSr~Ha~i~~~~~~~~~l~Dl~S~nGt~ 72 (106)
T 3gqs_A 2 PSRFLLKVLAGAN-IGAEFHLD-S--GKTYIVGSDPQVAD-----IVLSDMSISRQHAKIIIGNDNSVLIEDLGSKNGVI 72 (106)
T ss_dssp -CEEEEEECC-CC-TTCEEEEC-T--TCEEEEESCTTTCS-----EECCCTTSCSSCEEEEECTTSCEEEEECSCSSCCE
T ss_pred CceEEEEEEeCCC-CcEEEEEC-C--CCEEEEeECCCcCC-----EEeCCCCcchhhcEEEECCCCcEEEEECcCCCCeE
Confidence 4568777665443 33889998 3 2347999999 577 999999999999999998 7889999999999999
Q ss_pred eccCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEEe
Q 011888 416 VTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI 455 (475)
Q Consensus 416 vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~~ 455 (475)
|||+ ++.+ +..|++||+|+||.. .|+|...
T Consensus 73 vng~-----~i~~--~~~L~~Gd~i~~G~~---~~~~~~~ 102 (106)
T 3gqs_A 73 VEGR-----KIEH--QSTLSANQVVALGTT---LFLLVDY 102 (106)
T ss_dssp ETTE-----ECSS--EEECCTTCCEEETTE---EEEEEEE
T ss_pred ECCE-----ECCC--CeECCCCCEEEECCE---EEEEEcc
Confidence 9999 8874 579999999999998 6666544
No 27
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.80 E-value=2.9e-19 Score=151.27 Aligned_cols=105 Identities=18% Similarity=0.262 Sum_probs=88.1
Q ss_pred hhcCCcEEEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCcc----ccccceEEEE-ECCeEEEEEcC
Q 011888 335 RAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQ----VSKMHARISY-KDGAFYLIDLQ 409 (475)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~----vSr~Ha~i~~-~~~~~~i~D~~ 409 (475)
++....|+|...+... ..+.|. .+..++|||++.|+ |+++++. |||.||+|.+ .++.|+|+|++
T Consensus 4 ~~~~~~w~l~~~G~~~---~~~~l~---~~~~~~IGR~~~~d-----i~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~ 72 (138)
T 2pie_A 4 MAGGRSWCLRRVGMSA---GWLLLE---DGCEVTVGRGFGVT-----YQLVSKICPLMISRNHCVLKQNPEGQWTIMDNK 72 (138)
T ss_dssp GGGCEEEEEEETTCSS---CBEEEC---TTCCEEEESSSSSS-----EECCCSSCTTSSCSSCEEEEECTTSCEEEEECS
T ss_pred CCCCccEEEEEeCCCC---CEEEec---CCCeEEECCCCCCC-----EEeCCCCcCCCCChhHeEEEEcCCCcEEEEECC
Confidence 4566779999987653 567775 23459999999887 9999998 9999999999 58889999999
Q ss_pred CccceeeccCCCceeecCCCCcEEeCCCCEEEeCCC----ceEEEEEEEe
Q 011888 410 SEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD----KKAIFRVKVI 455 (475)
Q Consensus 410 S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~----~~~~~~~~~~ 455 (475)
|+|||||||. ++.++.++.|++||+|+||.. ..+.|.++..
T Consensus 73 S~NGT~vNg~-----~l~~~~~~~L~~GD~I~lG~~~~~~~~~~f~~~~~ 117 (138)
T 2pie_A 73 SLNGVWLNRA-----RLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVT 117 (138)
T ss_dssp CSSCEEETTE-----ECCTTCCEECCTTCEEEESCCCTTCSSCSEEEEEE
T ss_pred CCCCeEECCE-----EcCCCCcEECCCCCEEEECCCCCCCceEEEEEEec
Confidence 9999999999 999988999999999999983 3456666654
No 28
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.1e-19 Score=156.35 Aligned_cols=115 Identities=21% Similarity=0.288 Sum_probs=88.0
Q ss_pred hhhhccCchHHhh-----------hcCCcEEEEecCCCCc---ccccEEEeecCCCCCEEecCCCC----------CCCC
Q 011888 323 LRTWFRDDDALER-----------AMNGEWFLVPSGSENV---VSQPIYLSVSHENEPYLIGSESH----------EDFS 378 (475)
Q Consensus 323 ~~~~~~~~~~le~-----------~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~iGR~~~----------~~~~ 378 (475)
++++.++.++..+ .....|.|+...++.. ..+.+.|. ....++|||.+. ++..
T Consensus 3 ~l~~~ep~~a~~p~~~w~~~~~~~~~~~~~~l~v~k~g~~~~~~~~~~~L~---~~~~~~IGR~~~~~~~~~~~~~n~~~ 79 (158)
T 3els_A 3 MGKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLN---GRSCYLVGRELGHSLDTDLDDRTEIV 79 (158)
T ss_dssp --CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGGGGGGCCSEEEECS---SCSEEEEEECCCC---------CCCC
T ss_pred eeEecCCccccCCchhhhccccCcccCCceEEEEEeCCccCcccceEEEec---CCCceEeccccccccccccccccccc
Confidence 3455555555554 3456787777654431 33677777 234589999963 3334
Q ss_pred CceeeeCCccccccceEEEEECCe----EEEEEcCCccceeeccCCCceeecCCCCcEEeCCCCEEEeCCC
Q 011888 379 RTSIVIPSAQVSKMHARISYKDGA----FYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 445 (475)
Q Consensus 379 ~~~i~~~~~~vSr~Ha~i~~~~~~----~~i~D~~S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 445 (475)
.|||+++++.|||+||+|.+.++. |+|+|++|+|||||||. ++.++.+++|++||+|+||..
T Consensus 80 ~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT~VNg~-----ri~~~~~~~L~~GD~I~~G~s 145 (158)
T 3els_A 80 VADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNV-----VIPGARYIELRSGDVLTLSEF 145 (158)
T ss_dssp CCSEEECCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCCEETTE-----ECCTTCCEECCTTEEEESSSC
T ss_pred cCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeCCCCCccEECCE-----EcCCCceEEcCCCCEEEECCC
Confidence 478999999999999999988555 99999999999999999 999988999999999999975
No 29
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=99.80 E-value=1.1e-18 Score=181.95 Aligned_cols=223 Identities=9% Similarity=0.009 Sum_probs=134.8
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCe--EEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCccc----ce
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDK--VSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYS----GY 72 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~--v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~----~~ 72 (475)
.|.+.|.+.+.. .+++++ +|++++.++++ +.|++.+|++++||+||+|||.+|.+|+..++.....+. ..
T Consensus 176 ~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~~~~~lg~~~~~~~~~~~~~ 254 (526)
T 2pyx_A 176 KFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLLLGEHLQVPFLSQKSVLFND 254 (526)
T ss_dssp HHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCCCCCCTCCCEEECHHHHCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCCcccccccccCc
Confidence 356677776543 378888 59999886554 467788888899999999999999994444332211111 11
Q ss_pred EEEEEEeccCC--CCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHH
Q 011888 73 TCYTGIADFVP--ADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLIL 150 (475)
Q Consensus 73 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 150 (475)
.++........ ....... .....+.++++.+|..++....+ .+.. .. . ......+.+.+.+..+.+. +.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~pl~~~~~~~~-v~~~-~~-~-~~~~~~~~l~~~l~~~~~~----l~ 325 (526)
T 2pyx_A 255 RALAIQVPYSDANSPIASCT-HSTAQPNGWIWDIGLPTRKGVGY-VYSS-SH-T-NDIDAQKTLFNYLGVDGAA----AD 325 (526)
T ss_dssp EEEEEEEECSSTTCCCCSSE-EEEEETTEEEEEEECSSEEEEEE-EECT-TT-C-CHHHHHHHHHHHHTCCHHH----HH
T ss_pred cEEEEEeeccCCCCCCCCce-eEEecCCCeEEEeeCCCceEEEE-EecC-CC-C-ChHHHHHHHHHHHHhcCcc----cc
Confidence 22222222111 1112211 22233455677778876433222 2211 11 1 1122344556666555322 22
Q ss_pred hCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHH
Q 011888 151 ATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKS 230 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~ 230 (475)
.... ..+++.. ....+|..||++|+|||||.++|+.|||+|+|++||..|+++|... ....+.+|+.
T Consensus 326 ~~~~---~~~~~~~-~~~~~~~~grv~LiGDAAh~~~P~~GqGi~~ai~da~~La~~L~~~---------~~~~~~~l~~ 392 (526)
T 2pyx_A 326 KLEP---RQLAINP-GYRAKCWQNNCIAIGMAAGFIEPLEASALALIEWTASTLAQQLPPN---------RMVMDTISAR 392 (526)
T ss_dssp HCCC---EEEECCC-EEESCSEETTEEECGGGTEECCCTTCHHHHHHHHHHHHHHHTCCSC---------HHHHHHHHHH
T ss_pred cCCc---eEEeccc-CccccccCCCEEEEEhhhcccCccccccHHHHHHHHHHHHHHhhhc---------CCcCHHHHHH
Confidence 1221 1122221 1245677899999999999999999999999999999999887521 1345789999
Q ss_pred HHHHhhHHHHHHHHHHH
Q 011888 231 YERARRLRVAVIHGLAR 247 (475)
Q Consensus 231 Y~~~R~~~~~~~~~~s~ 247 (475)
|+++|+++...+..+..
T Consensus 393 Y~~~~~~~~~~~~~~~~ 409 (526)
T 2pyx_A 393 VNERYQQHWQQIIDFLK 409 (526)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999987765443
No 30
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.79 E-value=4.1e-19 Score=146.46 Aligned_cols=92 Identities=22% Similarity=0.304 Sum_probs=77.7
Q ss_pred cEEEEecCCCCcccccEEEeecCCCCCEEecCC-CCCCCCCceeeeCCccccccceEEEEECCeEEEEEcCCccceeecc
Q 011888 340 EWFLVPSGSENVVSQPIYLSVSHENEPYLIGSE-SHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTD 418 (475)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~-~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn~ 418 (475)
.|.|....+. ...+.+.|. . +..++|||. +.|+ |+++++.|||.||+|.++++.|+|+|++|+|||||||
T Consensus 12 ~l~L~v~~g~-~~g~~~~l~-~--~~~~~iGR~~~~~d-----i~l~d~~vSr~Ha~i~~~~~~~~l~Dl~S~nGT~vng 82 (118)
T 1uht_A 12 SLRLVFVKGP-REGDALDYK-P--GSTIRVGRIVRGNE-----IAIKDAGISTKHLRIESDSGNWVIQDLGSSNGTLLNS 82 (118)
T ss_dssp EEEEEESSST-TTTCBCCBC-T--TCCEEEESSSTTCS-----EECCSSSSCTTCEEEEECSSSEEEECCCCSSCCEESS
T ss_pred eEEEEEEeCC-CCCcEEEEC-C--CCEEEEcCCCCCCC-----EEeCCCCCchHHeEEEEECCEEEEEECCCCCCeEECC
Confidence 4555444322 233788887 3 235999999 6676 9999999999999999999999999999999999999
Q ss_pred CCCceeecCCCCcEEeCCCCEEEeCCC
Q 011888 419 NEGRRYRVSSNFPARFRPSDTIEFGSD 445 (475)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~gd~i~~g~~ 445 (475)
+ ++.++.++.|++||+|+||..
T Consensus 83 ~-----~l~~~~~~~L~~gd~i~lG~~ 104 (118)
T 1uht_A 83 N-----ALDPETSVNLGDGDVIKLGEY 104 (118)
T ss_dssp S-----BCCTTCEEECCTTEEEEETTT
T ss_pred E-----ECCCCCeEEcCCCCEEEECCe
Confidence 9 999888999999999999998
No 31
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.79 E-value=4.4e-19 Score=141.68 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=73.1
Q ss_pred ccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEECCeEEEEEcCCccceeeccCCCceeecCCCCcEE
Q 011888 354 QPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPAR 433 (475)
Q Consensus 354 ~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn~~~~~~~~~~~~~~~~ 433 (475)
+.++|. +.. ++|||+++|+ |+++++.|||.||+|.++++.|+|+|++|+|||||||+ ++. ++.
T Consensus 16 ~~~~l~-~~~---~~IGR~~~~d-----i~l~d~~vSr~Ha~i~~~~~~~~l~Dl~S~nGt~vng~-----~i~---~~~ 78 (100)
T 3po8_A 16 RTYQLR-EGS---NIIGRGQDAQ-----FRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTVNNA-----PVQ---EWQ 78 (100)
T ss_dssp CEEECC-SEE---EEEESSTTCS-----EECCCTTSCSSCEEEEECSSCEEEEECSCSSCCEETTE-----ECS---EEE
T ss_pred cEEEEC-CCC---EEEeCCCCCC-----EECCCCCcChhhCEEEEeCCEEEEEECCCCCCEEECCE-----ECc---eEE
Confidence 889998 444 9999999887 99999999999999999999999999999999999999 886 689
Q ss_pred eCCCCEEEeCCCceEEEEEEEe
Q 011888 434 FRPSDTIEFGSDKKAIFRVKVI 455 (475)
Q Consensus 434 l~~gd~i~~g~~~~~~~~~~~~ 455 (475)
|++||.|+||.. .|+|++.
T Consensus 79 L~~gd~i~iG~~---~~~~~~~ 97 (100)
T 3po8_A 79 LADGDVIRLGHS---EIIVRMH 97 (100)
T ss_dssp CCTTCEEEETTE---EEEEEEE
T ss_pred CCCCCEEEECCE---EEEEEEE
Confidence 999999999998 4555443
No 32
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.79 E-value=7.7e-19 Score=143.93 Aligned_cols=97 Identities=25% Similarity=0.371 Sum_probs=79.9
Q ss_pred hcCCcEEEE-ecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEECCeEEEEEcCCccce
Q 011888 336 AMNGEWFLV-PSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGT 414 (475)
Q Consensus 336 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt 414 (475)
.....|.|+ ..+...+ +.+.|. ...++|||++.|+ |+++++.|||.||+|.++++.|+|+|++|+|||
T Consensus 7 ~p~~~~~L~v~~g~~~g--~~~~l~----~~~~~IGR~~~~d-----i~l~d~~vSr~Ha~i~~~~~~~~l~Dl~S~nGt 75 (115)
T 2xt9_B 7 LPSGSALLVVKRGPNAG--SRFLLD----QPTTSAGRHPDSD-----IFLDDVTVSRRHAEFRLEGGEFQVVDVGSLNGT 75 (115)
T ss_dssp -CCSCEEEEEEESTTTT--CEEEEC----SSEEEEESSTTSS-----EECCSTTSCSSCEEEEEETTEEEEEECSCSSCE
T ss_pred CCCCcEEEEEEeCCCCC--eEEEEC----CCCEEECCCCCCC-----EEeCCcccChhheEEEEECCEEEEEECCCCCCe
Confidence 344445444 4444433 889998 4459999999887 999999999999999999999999999999999
Q ss_pred eeccCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEE
Q 011888 415 YVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKV 454 (475)
Q Consensus 415 ~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~ 454 (475)
||||+ ++. +..|++||+|+||.. .|+|..
T Consensus 76 ~vng~-----~i~---~~~L~~gd~i~iG~~---~l~~~~ 104 (115)
T 2xt9_B 76 YVNRE-----PVD---SAVLANGDEVQIGKF---RLVFLT 104 (115)
T ss_dssp EETTE-----ECS---EEEECTTCEEEETTE---EEEEEC
T ss_pred EECCE-----Ecc---eEECCCCCEEEECCE---EEEEEe
Confidence 99999 886 589999999999997 555554
No 33
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=99.78 E-value=3.2e-18 Score=177.95 Aligned_cols=219 Identities=9% Similarity=-0.035 Sum_probs=132.6
Q ss_pred hHHHHHhhccC--CCeEEcCcEEEEEEeeCCe--EEEEEcCCcEEEecEEEEecCCCCcccccccCCCC-----Ccccce
Q 011888 2 TLQQILAKAVG--DEIILNESNVIDFKDHGDK--VSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQE-----AIYSGY 72 (475)
Q Consensus 2 ~L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~--v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~-----~~~~~~ 72 (475)
.|.+.|.+.+. ..+++++ +|++++.++++ +.|++.+|++++||+||+|||.+|.+|+.+.+... ..+..
T Consensus 174 ~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~g~~~~~~~~~~~~~- 251 (511)
T 2weu_A 174 EVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLLINQTLGGRFQSFSDVLPNN- 251 (511)
T ss_dssp HHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCCCCCCTCCCEEECTTTCCCC-
T ss_pred HHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCCCccccccCccc-
Confidence 35667777654 3478889 99999986655 67888899899999999999999999765533221 11122
Q ss_pred EEEEEEeccC-CCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHh
Q 011888 73 TCYTGIADFV-PADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILA 151 (475)
Q Consensus 73 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 151 (475)
.++....... +...... ......++++++.+|..+ ...+.+.... . . ..++...+.+.+.+ .+.+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~P~~~-~~~~g~~~~~-~-~-~~~~~~~~~l~~~~-~~~~~~------ 319 (511)
T 2weu_A 252 RAVALRVPRENDEDMRPY-TTATAMSAGWMWTIPLFK-RDGNGYVYSD-E-F-ISPEEAERELRSTV-APGRDD------ 319 (511)
T ss_dssp EEEEEEEECSSGGGCCSS-EEEEEETTEEEEEEECSS-EEEEEEEECT-T-T-SCHHHHHHHHHHHH-CTTCTT------
T ss_pred ceEEEEeccCCCCCCCcc-eeceecCCCcEEEEECCC-ceEEEEEECC-C-C-CCHHHHHHHHHHHh-Cccccc------
Confidence 2222111111 1001121 122334556777778876 3333222221 1 1 11112223344433 222111
Q ss_pred CCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHH
Q 011888 152 TDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSY 231 (475)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y 231 (475)
... ... ++.. ...++|..+|++|||||||.++|+.|||+|+|++||..|+++|.. + ...+.+|+.|
T Consensus 320 ~~~-~~~--~~~~-~~~~~~~~~rv~liGDAAh~~~P~~g~G~~~a~~da~~La~~l~~---~-------~~~~~~l~~Y 385 (511)
T 2weu_A 320 LEA-NHI--QMRI-GRNERTWINNCVAVGLSAAFVEPLESTGIFFIQHAIEQLVKHFPG---E-------RWDPVLISAY 385 (511)
T ss_dssp SCC-EEE--ECCC-EEESCSEETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHTCCC---T-------TCCHHHHHHH
T ss_pred ccc-eeE--Eeec-cccccccCCCEEEEechhhccCccccccHHHHHHHHHHHHHHhcc---C-------CCCHHHHHHH
Confidence 111 111 1111 123466789999999999999999999999999999999988753 1 2236899999
Q ss_pred HHHhhHHHHHHHHHHHH
Q 011888 232 ERARRLRVAVIHGLARS 248 (475)
Q Consensus 232 ~~~R~~~~~~~~~~s~~ 248 (475)
+++|+++...+..+...
T Consensus 386 ~~~~~~~~~~~~~~~~~ 402 (511)
T 2weu_A 386 NERMAHMVDGVKEFLVL 402 (511)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998877655443
No 34
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.78 E-value=6.5e-19 Score=149.21 Aligned_cols=99 Identities=24% Similarity=0.360 Sum_probs=81.3
Q ss_pred hhhcCCcEEEEec-CCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEECCeEEEEEcCCcc
Q 011888 334 ERAMNGEWFLVPS-GSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEH 412 (475)
Q Consensus 334 e~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~n 412 (475)
.....+.|.|+.. +...+ ..+.|. ...++|||++.|+ |+++++.|||+||+|.++++.|+|+|++|+|
T Consensus 40 ~~~p~~~~~L~v~~G~~~g--~~~~L~----~~~~~IGR~~~~d-----i~l~d~~VSr~Ha~I~~~~~~~~l~DlgS~N 108 (143)
T 2kb3_A 40 ENLPAGSALLVVKRGPNAG--ARFLLD----QPTTTAGRHPESD-----IFLDDVTVSRRHAEFRINEGEFEVVDVGSLN 108 (143)
T ss_dssp TTCSSSCEEEEEEESTTTT--CEEEEC----SSEEEESSCTTCS-----BCCCCSSCCSSSEEEEEETTEEEEEESCCSS
T ss_pred ccCCCccEEEEEEeCCCCC--eEEEeC----CCCeeccCCCCCC-----EEeCCCCcChhhEEEEEECCEEEEEECCCcC
Confidence 3334555655544 44433 889998 4459999999887 9999999999999999999999999999999
Q ss_pred ceeeccCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEE
Q 011888 413 GTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKV 454 (475)
Q Consensus 413 Gt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~ 454 (475)
||||||+ ++. ++.|++||+|+||.. .|+|..
T Consensus 109 GT~VNg~-----~i~---~~~L~~GD~I~iG~~---~l~f~~ 139 (143)
T 2kb3_A 109 GTYVNRE-----PRN---AQVMQTGDEIQIGKF---RLVFLA 139 (143)
T ss_dssp CCEETTE-----ECS---EEECCTTEEEEETTE---EEEEEE
T ss_pred CeEECCE-----Ecc---eEECCCCCEEEECCE---EEEEEe
Confidence 9999999 886 589999999999997 555543
No 35
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.78 E-value=8.7e-19 Score=150.70 Aligned_cols=98 Identities=22% Similarity=0.343 Sum_probs=79.3
Q ss_pred CcE-EEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEE--------ECCeEEEEEcC
Q 011888 339 GEW-FLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISY--------KDGAFYLIDLQ 409 (475)
Q Consensus 339 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~--------~~~~~~i~D~~ 409 (475)
..| .|+..+++. .+.+.|. . +..++|||.+.|+ |+++++.|||.||+|.+ .++.|+|+|+
T Consensus 16 ~~~~~L~~~~~~~--g~~~~l~-~--~~~~~IGR~~~~d-----i~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~Dl- 84 (151)
T 2jqj_A 16 TCLGHLVNLIPGK--EQKVEIT-N--RNVTTIGRSRSCD-----VILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDK- 84 (151)
T ss_dssp CEEEEEEEEETTE--EEEEEEE-C--CSCEEEESSTTSS-----EECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEEC-
T ss_pred CceEEEEEecCCC--ceEEEEc-C--CCeEEeCCCCCCC-----EEECCCCCccccCEEEEecccCCcCcCCEEEEEEC-
Confidence 345 444555433 3788887 3 2449999999877 99999999999999999 7788999999
Q ss_pred CccceeeccCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEEe
Q 011888 410 SEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI 455 (475)
Q Consensus 410 S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~~ 455 (475)
|+|||||||. ++.++ +..|++||+|.||.+. .|+|...
T Consensus 85 S~NGT~VNg~-----~i~~~-~~~L~~GD~I~lG~~~--~~~f~~~ 122 (151)
T 2jqj_A 85 SRNGTFINGN-----RLVKK-DYILKNGDRIVFGKSC--SFLFKYA 122 (151)
T ss_dssp CSSCEEETTE-----ECCSS-CEEECSSEEEEETTTE--EEEEEEC
T ss_pred CCCCeEECCE-----EcCCC-ceECCCCCEEEECCCc--EEEEEEc
Confidence 9999999999 99887 8999999999999953 4444444
No 36
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.77 E-value=2.3e-18 Score=147.67 Aligned_cols=103 Identities=19% Similarity=0.269 Sum_probs=83.1
Q ss_pred hhcCCcE-EEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCcc---------ccccceEEEEECC---
Q 011888 335 RAMNGEW-FLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQ---------VSKMHARISYKDG--- 401 (475)
Q Consensus 335 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~---------vSr~Ha~i~~~~~--- 401 (475)
+.....| .|++...+ . ..+.|. ...++|||++.|+ |+++++. |||.||+|.+.++
T Consensus 24 ~~~~~~w~~L~~~~~~-~--~~i~L~----~~~~~IGR~~~~d-----i~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~ 91 (149)
T 1gxc_A 24 EPTPAPWARLWALQDG-F--ANLECV----NDNYWFGRDKSCE-----YCFDEPLLKRTDKYRTYSKKHFRIFREVGPKN 91 (149)
T ss_dssp -----CCEEEEECSTT-C--CCEEEC----SSEEEEESSTTCS-----EECCCGGGGGSSGGGGSCTTCEEEEEEECTTS
T ss_pred CCCCCeeEEEEEcCCC-C--ceEEEC----CCCEEecCCCCCC-----EEECCccccccccCCcCchhheEEEEECCCCc
Confidence 4455567 55555532 2 568898 4559999999777 9999985 9999999999866
Q ss_pred --eEEEEEcCCccceeeccCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEEe
Q 011888 402 --AFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI 455 (475)
Q Consensus 402 --~~~i~D~~S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~~ 455 (475)
.|+|+|+ |+|||||||. +|.++.++.|++||+|.||..+...|.|...
T Consensus 92 ~~~~~i~D~-StNGT~VNg~-----~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~ 141 (149)
T 1gxc_A 92 SYIAYIEDH-SGNGTFVNTE-----LVGKGKRRPLNNNSEIALSLSRNKVFVFFDL 141 (149)
T ss_dssp SEEEEEEEC-CSSCEEETTE-----ECCTTCEEECCTTEEEEESSTTCEEEEEEET
T ss_pred eeEEEEEEC-CCCCeEECCE-----ECCCCCeEECCCCCEEEECCCCCeEEEEEEC
Confidence 8999996 9999999999 9999999999999999999976677887665
No 37
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.77 E-value=5e-19 Score=151.01 Aligned_cols=104 Identities=19% Similarity=0.293 Sum_probs=83.8
Q ss_pred hhcCCcEEEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCcc----ccccceEEEEE-CCeEEEEEcC
Q 011888 335 RAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQ----VSKMHARISYK-DGAFYLIDLQ 409 (475)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~----vSr~Ha~i~~~-~~~~~i~D~~ 409 (475)
++....|+|...+.. . ..+.|. .+..++|||.+.|+ |+++++. |||.||+|.++ ++.|+|+|++
T Consensus 12 ~~~~~~w~L~~~G~~-~--~~~~l~---~~~~~~IGR~~~~d-----i~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~ 80 (145)
T 2csw_A 12 RAGGRSWCLRRVGMS-A--GWLLLE---DGCEVTVGRGFGVT-----YQLVSKICPLMISRNHCVLKQNPEGQWTIMDNK 80 (145)
T ss_dssp TTCSEEEEECCTTCS-C--CBEECC---TTCCEEEESSTTSS-----EECCCSSCGGGSCTTCEEEEECTTSCEEEEBSS
T ss_pred CCCCccEEEEEeCCC-C--CeEEeC---CCCcEEECCCCCCC-----EEECCCCcCCCCChhHeEEEEcCCCeEEEEECC
Confidence 345667988843333 2 567775 23459999999887 9999998 99999999995 8889999999
Q ss_pred CccceeeccCCCceeecCCCCcEEeCCCCEEEeCCC----ceEEEEEEE
Q 011888 410 SEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD----KKAIFRVKV 454 (475)
Q Consensus 410 S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~----~~~~~~~~~ 454 (475)
|+|||||||. ++.++.++.|++||+|+||.. ..+.|.+.+
T Consensus 81 S~NGT~vNg~-----~i~~~~~~~L~~GD~I~iG~~~~~g~~~~f~~~~ 124 (145)
T 2csw_A 81 SLNGVWLNRA-----RLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEV 124 (145)
T ss_dssp CSSCEEESSC-----BCCBTCCEECCSSCCEEESCCCTTCSSCSCCCCE
T ss_pred CCCCeEECCE-----ECCCCccEECCCCCEEEECCCCCCCceEEEEEEe
Confidence 9999999999 999888999999999999983 234555444
No 38
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.76 E-value=1.5e-19 Score=153.45 Aligned_cols=93 Identities=25% Similarity=0.467 Sum_probs=78.2
Q ss_pred CcEEEEecCCCCcccccEEEeecCCCCCEEecCCCC-CCCCCceeeeCCccccccceEEEEEC--CeEEEEEcCCcccee
Q 011888 339 GEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESH-EDFSRTSIVIPSAQVSKMHARISYKD--GAFYLIDLQSEHGTY 415 (475)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~-~~~~~~~i~~~~~~vSr~Ha~i~~~~--~~~~i~D~~S~nGt~ 415 (475)
..|.|....+.. ..+.+.|. . +..++|||++. |+ |+++++.|||.||+|.+++ +.|+|+|++|+||||
T Consensus 33 ~~~~L~v~~g~~-~g~~~~l~-~--~~~~~IGR~~~~~d-----i~l~d~~VSr~Ha~i~~~~~~~~~~l~Dl~S~NGT~ 103 (140)
T 2jpe_A 33 PGLHLDVVKGDK-LIEKLIID-E--KKYYLFGRNPDLCD-----FTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTF 103 (140)
T ss_dssp SSCBEEEESSSS-EEEEECCS-S--CSBCCBSSCTTTSS-----SCCCCSSSCTTSBEEEEBSSSCCEEEECCSCSSCEE
T ss_pred cCEEEEEEcCCC-cceEEEeC-C--CCeEEecCCCccCC-----EEeCCCCcChhheEEEEECCCCcEEEEECCCCCCeE
Confidence 446555444332 23678777 2 23499999998 77 9999999999999999987 899999999999999
Q ss_pred eccCCCceeecCCCCcEEeCCCCEEEeCCC
Q 011888 416 VTDNEGRRYRVSSNFPARFRPSDTIEFGSD 445 (475)
Q Consensus 416 vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 445 (475)
|||+ ++.++.++.|++||+|+||..
T Consensus 104 vNg~-----~l~~~~~~~L~~gd~i~~G~~ 128 (140)
T 2jpe_A 104 LGHI-----RLEPHKPQQIPIDSTVSFGAS 128 (140)
T ss_dssp SSSC-----EECSSSCCEECTTCCBBCSSC
T ss_pred ECCE-----ECCCCccEECCCCCEEEECCc
Confidence 9999 999888999999999999998
No 39
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.76 E-value=2e-18 Score=148.84 Aligned_cols=96 Identities=24% Similarity=0.345 Sum_probs=79.5
Q ss_pred CCcEEE-EecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEECCeEEEEEcCCccceee
Q 011888 338 NGEWFL-VPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYV 416 (475)
Q Consensus 338 ~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt~v 416 (475)
...|.| +..+...+ +.+.|. ...++|||++.|+ |+++++.|||+||+|.++++.|+|+|++|+|||||
T Consensus 53 ~~~~~L~v~~G~~~g--~~~~L~----~~~~~IGR~~~~d-----i~l~d~~VSr~HA~I~~~~~~~~l~DlgS~NGT~V 121 (162)
T 2kfu_A 53 PGSALLVVKRGPNAG--SRFLLD----QAITSAGRHPDSD-----IFLDDVTVSRRHAEFRLENNEFNVVDVGSLNGTYV 121 (162)
T ss_dssp SSCCEEEEEESTTCS--CEEETT----SSEEEEESCSSSS-----EESTTTSSSSCSEEEEEETTEEEEECCCCSSCEEE
T ss_pred CccEEEEEEeCCCCC--eEEEEC----CCCEEECCCCCCC-----EEECCCCcChhhEEEEEECCEEEEEECCCCCCeEE
Confidence 344444 44454433 788888 4459999999887 99999999999999999999999999999999999
Q ss_pred ccCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEEe
Q 011888 417 TDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI 455 (475)
Q Consensus 417 n~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~~ 455 (475)
||+ ++. +..|++||+|+||.. .|+|...
T Consensus 122 Ng~-----~i~---~~~L~~GD~I~iG~~---~l~f~~~ 149 (162)
T 2kfu_A 122 NRE-----PVD---SAVLANGDEVQIGKF---RLVFLTG 149 (162)
T ss_dssp TTB-----CCS---EEECCSSCEEEETTE---EEEEECS
T ss_pred CCE-----Ecc---eEECCCCCEEEECCE---EEEEEeC
Confidence 999 876 589999999999997 5555543
No 40
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.76 E-value=1.6e-18 Score=142.46 Aligned_cols=100 Identities=25% Similarity=0.352 Sum_probs=83.1
Q ss_pred cE-EEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCc-cccccceEEEEE--CCeEEEEEcCCcccee
Q 011888 340 EW-FLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSA-QVSKMHARISYK--DGAFYLIDLQSEHGTY 415 (475)
Q Consensus 340 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~-~vSr~Ha~i~~~--~~~~~i~D~~S~nGt~ 415 (475)
.| .|++..++ .....+.|. ...++|||++.|+ |++++. .|||.||+|.++ ++.|+|+| +|+||||
T Consensus 3 ~wg~L~~~~~~-~~~~~~~l~----~~~~~iGR~~~~d-----i~l~~~~~vSr~Ha~i~~~~~~~~~~l~D-~S~NGt~ 71 (116)
T 1lgp_A 3 PWGRLLRLGAE-EGEPHVLLR----KREWTIGRRRGCD-----LSFPSNKLVSGDHCRIVVDEKSGQVTLED-TSTSGTV 71 (116)
T ss_dssp CCEEECCTTCC-SSSCCEEEC----SSEEEEESSTTSS-----EECTTCTTSCTTCEEEEECTTTCCEEEEE-CSSSCCC
T ss_pred CEEEEEEeCCC-CCccEEEEC----CCCEEECCCCCCC-----EEeCCCCCCChhHeEEEEECCCCeEEEEE-CCcCCcE
Confidence 46 56666543 233789998 4559999999887 999765 999999999997 78899999 9999999
Q ss_pred eccCCCceeecCCCCcEEeCCCCEEEeCCCc-----eEEEEEEEe
Q 011888 416 VTDNEGRRYRVSSNFPARFRPSDTIEFGSDK-----KAIFRVKVI 455 (475)
Q Consensus 416 vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~-----~~~~~~~~~ 455 (475)
|||. ++.++.++.|++||+|.||..+ .+.|.|...
T Consensus 72 vng~-----~l~~~~~~~L~~GD~i~~G~~~~~~~~~~~f~f~~~ 111 (116)
T 1lgp_A 72 INKL-----KVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLYESL 111 (116)
T ss_dssp CCCC-----CCCCSSCCCCCTTCEEEEECCSSCGGGCEEEECCCS
T ss_pred ECCE-----EcCCCCcEECCCCCEEEEeccCCCCCceEEEEEEcc
Confidence 9999 9998888999999999999864 567776554
No 41
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=99.76 E-value=2.8e-18 Score=179.38 Aligned_cols=217 Identities=10% Similarity=-0.010 Sum_probs=131.1
Q ss_pred hHHHHHhhccC--CCeEEcCcEEEEEEeeCCe--EEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCccc----ceE
Q 011888 2 TLQQILAKAVG--DEIILNESNVIDFKDHGDK--VSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYS----GYT 73 (475)
Q Consensus 2 ~L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~--v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~----~~~ 73 (475)
.|.+.|.+.+. ...++++ +|++++.++++ +.|++.+|++++||+||+|||.+|.+|+.+.+.....+. ...
T Consensus 166 ~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~~~~~lg~~~~~~~~~~~~~~ 244 (538)
T 2aqj_A 166 LVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLLINQALKEPFIDMSDYLLCDS 244 (538)
T ss_dssp HHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCCCCCCTCCCEEECTTTCCCCE
T ss_pred HHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhhHHHHhCCCccccccccccce
Confidence 35667776654 3468888 89999886554 578888998999999999999999997766443211111 112
Q ss_pred EEEEEeccCCC--CcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHh
Q 011888 74 CYTGIADFVPA--DIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILA 151 (475)
Q Consensus 74 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 151 (475)
++......... ..... ......+.++++.+|..++. .+.+.+.. . ...+....+.+.+.+... + +
T Consensus 245 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~p~~~~~-~~g~v~~~-~--~~~~~~~~~~l~~~~~~~-~-~------ 311 (538)
T 2aqj_A 245 AVASAVPNDDARDGVEPY-TSSIAMNSGWTWKIPMLGRF-GSGYVFSS-H--FTSRDQATADFLKLWGLS-D-N------ 311 (538)
T ss_dssp EEEEEEECCHHHHCCCSS-EEEEECSSEEEEEEEETTEE-EEEEEECT-T--TSCHHHHHHHHHHHHTCC-T-T------
T ss_pred EEEEecccCCcccCCCCc-eeeeecCCceEEEecCCCce-EEEEEEcC-C--CCChHHHHHHHHHHhcCC-C-C------
Confidence 22211111100 01111 12233455677777877642 22222221 1 111122233444444331 1 1
Q ss_pred CCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHH
Q 011888 152 TDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSY 231 (475)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y 231 (475)
... ..+++.. ....+|..||++|+|||||.++|+.|||+|+|++||..|+++|.. + ...+.+|+.|
T Consensus 312 ~~~---~~~~~~~-~~~~~~~~grvvliGDAAh~~~P~~gqG~~~a~~da~~La~~L~~----~------~~~~~~l~~Y 377 (538)
T 2aqj_A 312 QPL---NQIKFRV-GRNKRAWVNNCVSIGLSSCFLEPLESTGIYFIYAALYQLVKHFPD----T------SFDPRLSDAF 377 (538)
T ss_dssp CCC---EEEECCC-EEESCSEETTEEECGGGTEECCGGGSCHHHHHHHHHHHHHHTCCB----T------TCCHHHHHHH
T ss_pred CCc---eEEeecc-ccccccccCCEEEEcccccccCcchhccHHHHHHHHHHHHHHhhc----c------CCCHHHHHHH
Confidence 111 1112211 123467789999999999999999999999999999999987742 1 2336889999
Q ss_pred HHHhhHHHHHHHHHH
Q 011888 232 ERARRLRVAVIHGLA 246 (475)
Q Consensus 232 ~~~R~~~~~~~~~~s 246 (475)
+++|+++...+..+.
T Consensus 378 ~~~~~~~~~~~~~~~ 392 (538)
T 2aqj_A 378 NAEIVHMFDDCRDFV 392 (538)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999887765443
No 42
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.75 E-value=1.4e-18 Score=153.44 Aligned_cols=118 Identities=20% Similarity=0.258 Sum_probs=85.6
Q ss_pred chhhhhhccCchHHhhh-----------cCCcEEEEecCCCC---cccccEEEeecCCCCCEEecCCCCCC---------
Q 011888 320 SDNLRTWFRDDDALERA-----------MNGEWFLVPSGSEN---VVSQPIYLSVSHENEPYLIGSESHED--------- 376 (475)
Q Consensus 320 ~~~~~~~~~~~~~le~~-----------~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~iGR~~~~~--------- 376 (475)
+..+++|.++.++..+. ....|.|....++. ...+.+.|. ....++|||++..+
T Consensus 47 ~gv~lky~eP~~a~~P~~~w~~~~~~~~~~~~~~L~v~k~g~k~~~~i~~~~L~---~~s~y~IGR~~~~~~~~~~~~~~ 123 (205)
T 3elv_A 47 EGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLN---GRSCYLVGRELGHSLDTDLDDRT 123 (205)
T ss_dssp -----CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGGGCTTCCSEEEECS---SCSEEEEEECCCC---------C
T ss_pred ccEEEeccCCCcccCCchHHhhcccccccCCceEEEEEeCCCcccccceEEEec---CCCceeecccccccccccccccc
Confidence 44566677776665442 24568666664332 123678886 24559999997411
Q ss_pred -CCCceeeeCCccccccceEEEEEC-C---eEEEEEcCCccceeeccCCCceeecCCCCcEEeCCCCEEEeCCC
Q 011888 377 -FSRTSIVIPSAQVSKMHARISYKD-G---AFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 445 (475)
Q Consensus 377 -~~~~~i~~~~~~vSr~Ha~i~~~~-~---~~~i~D~~S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 445 (475)
...|||+++++.|||+||+|.+.. + .|+|+|++|+|||||||. +|.+..++.|++||+|+||..
T Consensus 124 e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNGTfVNG~-----rI~~~~~~~L~~GD~I~fG~s 192 (205)
T 3elv_A 124 EIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNV-----VIPGARYIELRSGDVLTLSEF 192 (205)
T ss_dssp CCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEECSCSSCCEETTE-----ECCBTSCEECCTTCEEESSSS
T ss_pred cCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeCCCCCCCeECCE-----ECCCCceeECCCCCEEEECCC
Confidence 223779999999999999998763 2 499999999999999999 999888899999999999975
No 43
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.75 E-value=7.4e-18 Score=142.80 Aligned_cols=83 Identities=25% Similarity=0.439 Sum_probs=72.3
Q ss_pred ccccEEEeecCC--CCCEEecCCCCCCCCCceeeeCCccccccceEEEEECC--eEEEEEcCCccceeeccCCCceeecC
Q 011888 352 VSQPIYLSVSHE--NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDG--AFYLIDLQSEHGTYVTDNEGRRYRVS 427 (475)
Q Consensus 352 ~~~~~~l~~~~~--~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~--~~~i~D~~S~nGt~vn~~~~~~~~~~ 427 (475)
..+.+.|. ... ...++|||++.|+ |+++++.|||.||+|.++++ .|+|+|++|+|||||||+ ++.
T Consensus 18 ~g~~~~l~-~~~~~~~~~~IGR~~~~d-----i~l~d~~VSr~Ha~i~~~~~~~~~~l~DlgS~NGT~vNg~-----~i~ 86 (139)
T 1mzk_A 18 IGLQHAVN-STSSSKLPVKLGRVSPSD-----LALKDSEVSGKHAQITWNSTKFKWELVDMGSLNGTLVNSH-----SIS 86 (139)
T ss_dssp CSCEEEEC-TTCSTTCSEEEESSSSCS-----EECCCTTSSSEEEEEEEETTTTEEEEEETTCSSCCEETTE-----ESS
T ss_pred CCeEEEec-CCCCccceEEeeCCCCCC-----EEeCCCCCChHHcEEEEECCCCEEEEEECCCCCCEEECCE-----ECc
Confidence 33788887 331 1359999999887 99999999999999999864 799999999999999999 887
Q ss_pred C--------CCcEEeCCCCEEEeCCC
Q 011888 428 S--------NFPARFRPSDTIEFGSD 445 (475)
Q Consensus 428 ~--------~~~~~l~~gd~i~~g~~ 445 (475)
+ +.++.|++||+|+||..
T Consensus 87 ~~~~~~~~~~~~~~L~~GD~I~iG~~ 112 (139)
T 1mzk_A 87 HPDLGSRKWGNPVELASDDIITLGTT 112 (139)
T ss_dssp CCCTTTCCCCCCEECCTTEEEECSSS
T ss_pred CcccccccCCceEECCCCCEEEECCE
Confidence 3 67899999999999998
No 44
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.75 E-value=2.9e-18 Score=148.12 Aligned_cols=102 Identities=18% Similarity=0.341 Sum_probs=82.8
Q ss_pred CcEE-EEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEEC---------------Ce
Q 011888 339 GEWF-LVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKD---------------GA 402 (475)
Q Consensus 339 ~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~---------------~~ 402 (475)
+.++ |.|..+. ...+.++|. .. ..+++|||++.|+ |+++++.|||.||+|.+.+ +.
T Consensus 3 g~~l~L~p~~~~-~~~~~i~L~-~~-~~~~~IGR~~~~d-----i~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~ 74 (158)
T 1dmz_A 3 GRFLTLKPLPDS-IIQESLEIQ-QG-VNPFFIGRSEDCN-----CKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDD 74 (158)
T ss_dssp SCCEEEEECTTS-SCCCCEEET-TS-CSCEEEESSTTSS-----EECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEE
T ss_pred ceEEEEEeCCCC-ccceEEEEc-CC-CceEEECCCCCCC-----EEeCCCCcChHHeEEEEecCcccccccccccccccc
Confidence 4454 5555543 334788887 21 2349999999877 9999999999999999876 78
Q ss_pred EEEEEcCCccceeeccCCCceeecCCCCcEEeCCCCEEEe-----CCCceEEEEEEEe
Q 011888 403 FYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEF-----GSDKKAIFRVKVI 455 (475)
Q Consensus 403 ~~i~D~~S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~-----g~~~~~~~~~~~~ 455 (475)
|+|+|+ |+|||||||+ ++.++.++.|++||+|+| |.. .+.|++...
T Consensus 75 ~~l~Dl-StNGT~VNg~-----ri~~~~~~~L~~GD~I~l~~d~~G~~-~l~f~~~~~ 125 (158)
T 1dmz_A 75 IWYCHT-GTNVSYLNNN-----RMIQGTKFLLQDGDEIKIIWDKNNKF-VIGFKVEIN 125 (158)
T ss_dssp EEEEEC-STTCCEETTE-----ECCSSEEEECCSSCCEESCCCTTTTC-CCCEEEECS
T ss_pred EEEEEC-CcCCeEECCE-----EcCCCceEEcCCCCEEEEeecCCCCE-EEEEEEEeC
Confidence 999999 9999999999 999888899999999999 887 556766654
No 45
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.75 E-value=2.7e-18 Score=143.56 Aligned_cols=84 Identities=26% Similarity=0.284 Sum_probs=74.9
Q ss_pred cccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEECCeEEEEEcCCccceeeccCCCceeecCCCCcE
Q 011888 353 SQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPA 432 (475)
Q Consensus 353 ~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn~~~~~~~~~~~~~~~ 432 (475)
.+.+.|. ...++|||++.|+ |+++++.|||.||+|.++++.|+|+|++|+|||||||+ ++. .+.
T Consensus 25 g~~~~l~----~~~~~IGR~~~~d-----i~l~d~~VSr~Ha~i~~~~~~~~l~Dl~S~nGt~vNg~-----~i~--~~~ 88 (128)
T 1r21_A 25 GPHFPLS----LSTCLFGRGIECD-----IRIQLPVVSKQHCKIEIHEQEAILHNFSSTNPTQVNGS-----VID--EPV 88 (128)
T ss_dssp EEEEECC----SSEEEEESSTTSS-----EECCCTTSCTTCEEEEECSSCEEECCCCSSSCCEETTE-----ECS--SCE
T ss_pred ceEEEEC----CCCEEECCCCCCC-----EEECCCCCChhHEEEEEECCEEEEEECCCCCCEEECCE-----ECC--CcE
Confidence 3788888 4459999999887 99999999999999999999999999999999999999 887 368
Q ss_pred EeCCCCEEEeCCCceEEEEEEEe
Q 011888 433 RFRPSDTIEFGSDKKAIFRVKVI 455 (475)
Q Consensus 433 ~l~~gd~i~~g~~~~~~~~~~~~ 455 (475)
.|++||+|.||.. .|+|...
T Consensus 89 ~L~~Gd~i~iG~~---~~~~~~~ 108 (128)
T 1r21_A 89 RLKHGDVITIIDR---SFRYENE 108 (128)
T ss_dssp ECCTTEEEECSSC---EEEEEEC
T ss_pred EcCCCCEEEECCE---EEEEEeC
Confidence 9999999999998 6666654
No 46
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.74 E-value=2.9e-18 Score=146.12 Aligned_cols=75 Identities=25% Similarity=0.398 Sum_probs=69.9
Q ss_pred ccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEECCeEEEEEcCCccceeeccCCCceeecCCCCcEE
Q 011888 354 QPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPAR 433 (475)
Q Consensus 354 ~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn~~~~~~~~~~~~~~~~ 433 (475)
+.+.|. +.+ ++|||+++|+ |+++++.|||.||+|.++++.|+|+|++|+|||||||+ ++. +..
T Consensus 78 ~~~~L~-~~~---~~IGR~~~~d-----I~L~d~~VSr~HA~I~~~~~~~~l~DlgStNGT~VNG~-----~i~---~~~ 140 (157)
T 3oun_A 78 RTYQLR-EGS---NIIGRGQDAQ-----FRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTVNNA-----PVQ---EWQ 140 (157)
T ss_dssp CEEECC-SEE---EEEESSTTCS-----EECCCTTSCTTCEEEEECSSCEEEEECSCSSCCEETTE-----ECS---EEE
T ss_pred eEEEEC-CCc---EEEEeCCCCC-----EEeCCCCcChhHEEEEEECCEEEEEECCCCCCeEECCE-----ECc---eEE
Confidence 889998 444 9999999887 99999999999999999999999999999999999999 886 589
Q ss_pred eCCCCEEEeCCC
Q 011888 434 FRPSDTIEFGSD 445 (475)
Q Consensus 434 l~~gd~i~~g~~ 445 (475)
|++||+|+||..
T Consensus 141 L~~GD~I~lG~~ 152 (157)
T 3oun_A 141 LADGDVIRLGHS 152 (157)
T ss_dssp CCTTCEEEETTE
T ss_pred CCCCCEEEECCE
Confidence 999999999998
No 47
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=99.73 E-value=2.1e-17 Score=167.89 Aligned_cols=194 Identities=19% Similarity=0.165 Sum_probs=116.7
Q ss_pred EecEEEEecCCCCcccccccCCC--CCcccceEEEEEEe-ccCCCCcCCcceEEEecCceEEEEEe-CCCCeEEEEEEEe
Q 011888 43 AGDLLIGADGIWSKVRKNLFGPQ--EAIYSGYTCYTGIA-DFVPADIESVGYRVFLGHKQYFVSSD-VGAGKMQWYAFHK 118 (475)
Q Consensus 43 ~adlvVGADG~~S~vR~~l~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 118 (475)
++|+||+|||.+|.+|....... ...+.+.....++. ...+.+.....+.++.+.+..+++.. ..++...+++...
T Consensus 155 ~ad~VV~AdG~~S~~~~~~~~~~~~~~~~p~r~~~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~p~~~~~g~~~~~~~~~ 234 (430)
T 3ihm_A 155 QYDLLVVCTGKYALGKVFEKQSENSPFEKPQRALCVGLFKGIKEAPIRAVTMSFSPGHGELIEIPTLSFNGMSTALVLEN 234 (430)
T ss_dssp TSSEEEECCCCTTGGGGSCBCGGGCCCSSCSSEEEEEEEESBCCCSSCCEEEEEETTTEEEEEEEEEETTEEEEEEEEEE
T ss_pred cCCEEEECCCCcchHHhccCCCCCCcccCCCeeEEEEEEccCCCCCcCeeeeeecCCCcceEEecccCCCcceEEEEEEe
Confidence 68999999999999985543211 11222222222222 11221222334455555554444322 2334444444444
Q ss_pred CCCCCC---------CCCcchHHHHHHHhhCCChHHHHHHHhCC------cccee---ecccccCCCCccccCCcEEE-E
Q 011888 119 EPAGGV---------DGPEGKKERLLKIFEGWCDNVVDLILATD------EEAIL---RRDIYDRTPIFTWGRGRVTL-L 179 (475)
Q Consensus 119 ~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~grvvL-v 179 (475)
.+.... ..++...+.+.+.|..|.+.+...+.... +..+. .+++. ..+..+|..||++| +
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~ 313 (430)
T 3ihm_A 235 HIGSDLEVLAHTKYDDDPRAFLDLMLEKLGKHHPSVAERIDPAEFDLANSSLDILQGGVVPAF-RDGHATLNNGKTIIGL 313 (430)
T ss_dssp CTTSSSGGGGTSCTTTCHHHHHHHHHHHHHHHCHHHHTTBCTTTCEESSSTTSEEEECCCCEE-BCSEEECTTSCEEEEC
T ss_pred cCCCcHHHhccccCCCCHHHHHHHHHHHHHHhCccHHHHHhhchhccccCccceeecceeecc-cccccccCCCCEEEEe
Confidence 432111 11222344677778888887766654433 11111 12222 23557899999999 9
Q ss_pred cccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhh-HHHHHHHHHHH
Q 011888 180 GDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARR-LRVAVIHGLAR 247 (475)
Q Consensus 180 GDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~-~~~~~~~~~s~ 247 (475)
|||||+|+|++|||+|+||+||.+|+++|... .+.+++|..|+.+|+ +++..+...++
T Consensus 314 GDAah~~~p~~g~G~~~a~~da~~l~~~l~~~----------~~~~~~~~~~~~~r~~~~~~~~~~~~~ 372 (430)
T 3ihm_A 314 GDIQATVDPVLGQGANMASYAAWILGEEILAH----------SVYDLRFSEHLERRRQDRVLCATRWTN 372 (430)
T ss_dssp GGGTEECCGGGCCHHHHHHHHHHHHHHHHHHC----------SCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccCCCchhhhHHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999874 124689999999998 55555544443
No 48
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.73 E-value=9.4e-18 Score=140.22 Aligned_cols=87 Identities=28% Similarity=0.404 Sum_probs=71.8
Q ss_pred EEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEE---CC--eEEEEEc-----CCc
Q 011888 342 FLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK---DG--AFYLIDL-----QSE 411 (475)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~---~~--~~~i~D~-----~S~ 411 (475)
+++..++.. .+.+.|. ...++|||++.|+ |+++++.|||.||+|.+. ++ .|+|+|+ +|+
T Consensus 13 ~lvv~~~~~--~~~~~l~----~~~~~IGR~~~~d-----i~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~ 81 (131)
T 3hx1_A 13 ILIILDDAG--RREVLLT----ETFYTIGRSPRAD-----IRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSV 81 (131)
T ss_dssp EEEEEETTE--EEEEEEC----SSEEEEESSTTSS-----EECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCS
T ss_pred EEEEECCCC--cEEEEEC----CCCEEECCCCCCC-----EEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCC
Confidence 444444432 3888898 4459999999888 999999999999999886 23 4999999 799
Q ss_pred cceeeccCCCceeecCCCCcEEeCCCCEEEeCCCce
Q 011888 412 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKK 447 (475)
Q Consensus 412 nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~ 447 (475)
|||||||+ ++.+ +.|++||+|+||....
T Consensus 82 NGT~vNg~-----~i~~---~~L~~GD~I~iG~~~~ 109 (131)
T 3hx1_A 82 NGLMINGK-----KVQE---HIIQTGDEIVMGPQVS 109 (131)
T ss_dssp SCEEETTE-----EESE---EECCTTCEEECSTTCE
T ss_pred CceEECCE-----EeEe---EECCCCCEEEECCEEE
Confidence 99999999 8873 8999999999999843
No 49
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=99.73 E-value=5.2e-17 Score=170.09 Aligned_cols=220 Identities=9% Similarity=0.006 Sum_probs=130.5
Q ss_pred hHHHHHhhccC---CCeEEcCcEEEEEEeeCCe--EEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCccc----ce
Q 011888 2 TLQQILAKAVG---DEIILNESNVIDFKDHGDK--VSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYS----GY 72 (475)
Q Consensus 2 ~L~~~L~~~~~---~~~i~~~~~v~~v~~~~~~--v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~----~~ 72 (475)
.|.+.|.+.+. ..+++++ +|++++.++++ +.|++.+|++++||+||+|||.+|.+|+.+++.....+. ..
T Consensus 195 ~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~~~~~lg~~~~~~~~~~~~~ 273 (550)
T 2e4g_A 195 LVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLND 273 (550)
T ss_dssp HHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCCCCCCTCCCEEECTTTCCCC
T ss_pred HHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhhHHHHhCCCccccccccccc
Confidence 35666776653 3478899 99999876554 678888998999999999999999995544332211111 11
Q ss_pred EEEEEEeccC-CC-CcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHH
Q 011888 73 TCYTGIADFV-PA-DIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLIL 150 (475)
Q Consensus 73 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 150 (475)
.++....... +. .... .......++++++.+|..+ .....+.... . . ..++...+.+.+.+... +.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~ipl~~-~~~~g~v~~~-~-~-~~~~~~~~~l~~~~~~~-p~l----- 342 (550)
T 2e4g_A 274 SAVATQVPHDDDANGVEP-FTSAIAMKSGWTWKIPMLG-RFGTGYVYSS-R-F-ATEDEAVREFCEMWHLD-PET----- 342 (550)
T ss_dssp EEEEEEEECCHHHHCCCS-SEEEEECSSEEEEEEECSS-EEEEEEEECT-T-T-SCHHHHHHHHHHHTTCC-TTT-----
T ss_pred ceEEEeecccCCcccCCC-ceeeeecCCceEEEccCCC-ccceEEEEec-C-C-CChHHHHHHHHHhhCcC-ccc-----
Confidence 1221111111 00 0111 1122233556667777765 3322222211 1 1 11112223344444321 111
Q ss_pred hCCccceeecccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHH
Q 011888 151 ATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKS 230 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~ 230 (475)
... ... ++ .....++|..+|++|||||||.++|+.|||+|+|++||..|+++|.. ....+.+|+.
T Consensus 343 -~~~-~~i--~~-~~~~~~~~~~~rvvliGDAAh~~~P~~GqGi~~a~~da~~La~~L~~----------~~~~~~~l~~ 407 (550)
T 2e4g_A 343 -QPL-NRI--RF-RVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPD----------KSLNPVLTAR 407 (550)
T ss_dssp -SCC-EEE--EC-CCEEESCSEETTEEECSTTTEECCGGGSCHHHHHHHHHHHHHHTCCC----------TTCCHHHHHH
T ss_pred -CCC-ceE--Ee-cCCCccccccCCEEEEehhhcccCccchhhHHHHHHHHHHHHHhccc----------cCCCHHHHHH
Confidence 111 111 11 11123456679999999999999999999999999999999987742 1234689999
Q ss_pred HHHHhhHHHHHHHHHHHH
Q 011888 231 YERARRLRVAVIHGLARS 248 (475)
Q Consensus 231 Y~~~R~~~~~~~~~~s~~ 248 (475)
|+++|+++...+..+...
T Consensus 408 Y~~~~~~~~~~i~~~~~~ 425 (550)
T 2e4g_A 408 FNREIETMFDDTRDFIQA 425 (550)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999887765554
No 50
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.73 E-value=3.2e-18 Score=150.82 Aligned_cols=108 Identities=16% Similarity=0.314 Sum_probs=85.3
Q ss_pred hhhcCCcEEEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEEC-------------
Q 011888 334 ERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKD------------- 400 (475)
Q Consensus 334 e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~------------- 400 (475)
.....+.|+.+...+.....+.+.|. . ...+++|||++.|+ |+++++.|||.||+|.+.+
T Consensus 22 ~~~~~g~~l~L~~~~~~~~~~~i~L~-~-~~~~~~IGR~~~~d-----i~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~ 94 (182)
T 1qu5_A 22 KKKGNGRFLTLKPLPDSIIQESLEIQ-Q-GVNPFFIGRSEDCN-----CKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQ 94 (182)
T ss_dssp CCSSSSCCEEECCCTTSSSCSCCCBT-T-CCSSEEESSSTTSS-----SCCCCTTSCSSCEEEEEECCCCCSSCCSSCCC
T ss_pred ccCCCccEEEEEeCCCCCcceEEEEc-C-CCceEEECCCCCCC-----EEECCCCcChHHeEEEEecCcccccccccccc
Confidence 34445566655444333334677776 1 12349999999887 9999999999999999987
Q ss_pred --CeEEEEEcCCccceeeccCCCceeecCCCCcEEeCCCCEEEe-----CCCceEEEEEEEe
Q 011888 401 --GAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEF-----GSDKKAIFRVKVI 455 (475)
Q Consensus 401 --~~~~i~D~~S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~-----g~~~~~~~~~~~~ 455 (475)
+.|+|+|+ |+|||||||. +|.++.++.|++||+|+| |.. .+.|++...
T Consensus 95 ~~~~~~l~Dl-StNGT~VNg~-----ri~~~~~~~L~~GD~I~l~~d~~G~~-~l~f~~~~~ 149 (182)
T 1qu5_A 95 GLDDIWYCHT-GTNVSYLNNN-----RMIQGTKFLLQDGDEIKIIWDKNNKF-VIGFKVEIN 149 (182)
T ss_dssp SCCEEEECCC-SSSCCEETTE-----ECCSSEEEECCTTBCCEEEEEGGGTE-EEECCEEES
T ss_pred ccceEEEEEC-CcCCeEECCE-----EcCCCcceEcCCCCEEEEEEcCCCCE-EEEEEEEeC
Confidence 89999999 9999999999 999888899999999999 887 556666554
No 51
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.72 E-value=1.7e-17 Score=144.44 Aligned_cols=106 Identities=17% Similarity=0.230 Sum_probs=82.9
Q ss_pred CCcEEEEecCCCCcccccEEEeecC--------CCCCEEecCCCCCCCCCceeeeCCc-cccccceEEEEE-CCeEEEEE
Q 011888 338 NGEWFLVPSGSENVVSQPIYLSVSH--------ENEPYLIGSESHEDFSRTSIVIPSA-QVSKMHARISYK-DGAFYLID 407 (475)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~iGR~~~~~~~~~~i~~~~~-~vSr~Ha~i~~~-~~~~~i~D 407 (475)
...|.|+...+. .....+.|. .. ....++|||++.|+ |+++++ .|||.||+|.++ ++.|+|+|
T Consensus 31 ~~~~~L~v~~G~-~~g~~~~l~-~~~v~~~~~~~~~~~~IGR~~~~d-----i~l~d~~~vSr~Ha~I~~~~~g~~~l~D 103 (164)
T 1g3g_A 31 NIVCRVICTTGQ-IPIRDLSAD-ISQVLKEKRSIKKVWTFGRNPACD-----YHLGNISRLSNKHFQILLGEDGNLLLND 103 (164)
T ss_dssp SCCEEEECSSSS-SCCEEECCC-HHHHHHCSSSCCEEEEEESSSSSS-----EECCCCTTTTSSCEEEEECSTTCEEEEE
T ss_pred CccEEEEEecCC-CCCeEEEec-cccccccccccCCcEEECCCCCCC-----EEeCCcCCcChhHEEEEECCCCCEEEEE
Confidence 334555544433 333666666 32 01249999999887 999998 699999999995 89999999
Q ss_pred cCCccceeeccCCCceeecCCCCcEEeCCCCEEEeCCC---ceEEEEEEEec
Q 011888 408 LQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD---KKAIFRVKVIG 456 (475)
Q Consensus 408 ~~S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~---~~~~~~~~~~~ 456 (475)
+ |+|||||||. ++.++.++.|++||+|.||.+ ..+.|.|...+
T Consensus 104 l-S~NGT~vNg~-----~i~~~~~~~L~~GD~I~iG~~~~~~~~~f~~~~~~ 149 (164)
T 1g3g_A 104 I-STNGTWLNGQ-----KVEKNSNQLLSQGDEITVGVGVESDILSLVIFIND 149 (164)
T ss_dssp C-CSSCEEETTE-----EECTTEEEECCTTCEEEESCSSTTSCEEEEEEECH
T ss_pred C-CCCCeEECCE-----EcCCCCceEcCCCCEEEECCCCCCCcEEEEEEeCc
Confidence 9 9999999999 999888899999999999996 35677776653
No 52
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.70 E-value=4.8e-17 Score=134.18 Aligned_cols=85 Identities=19% Similarity=0.301 Sum_probs=72.0
Q ss_pred cccEEEeecCCCCCEEecCC--CCCCCCCceeeeCCccccccceEEEEECCeEEEEEcCCccceeeccCCCceeecCCCC
Q 011888 353 SQPIYLSVSHENEPYLIGSE--SHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNF 430 (475)
Q Consensus 353 ~~~~~l~~~~~~~~~~iGR~--~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn~~~~~~~~~~~~~ 430 (475)
...++|. +++ ++|||. +.| ||+++++.|||+||+|.++++.|+|+|++|+|||||||+ ++. .
T Consensus 28 ~~~~~L~-~~~---~~IGr~r~~~~-----di~l~~~~vSr~Ha~i~~~~~~~~l~dl~S~ngt~vNg~-----~i~--~ 91 (120)
T 1wln_A 28 PKLYRLQ-LSV---TEVGTEKFDDN-----SIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDAETYVDGQ-----RIS--E 91 (120)
T ss_dssp CCEEECC-SEE---EECSSSCCSTT-----CCCCCCTTCCSSCEEEEESSSCEEEEESCSSSCEEETSC-----BCS--S
T ss_pred cEEEEEC-CCC---EEECCCCCCCC-----cEEECCCCCchhheEEEEcCCEEEEEECCCCCCEEECCE-----EcC--C
Confidence 3778888 444 999974 444 499999999999999999999999999999999999999 886 4
Q ss_pred cEEeCCCCEEEeCCCceEEEEEEEe
Q 011888 431 PARFRPSDTIEFGSDKKAIFRVKVI 455 (475)
Q Consensus 431 ~~~l~~gd~i~~g~~~~~~~~~~~~ 455 (475)
++.|++||+|.||... .|+|...
T Consensus 92 ~~~L~~GD~I~iG~~~--~~~f~~p 114 (120)
T 1wln_A 92 TTMLQSGMRLQFGTSH--VFKFVDP 114 (120)
T ss_dssp CEEECTTCEEEETTTE--EEEEECS
T ss_pred CEECCCCCEEEECCce--EEEEECC
Confidence 6899999999999942 5666543
No 53
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.69 E-value=1.7e-16 Score=132.22 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=70.3
Q ss_pred CEEecCCCCCCCCCceeeeCCc-cccccceEEEE-ECCeEEEEEcCCccceeeccCCCceeecCCCCcEEeCCCCEEEeC
Q 011888 366 PYLIGSESHEDFSRTSIVIPSA-QVSKMHARISY-KDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFG 443 (475)
Q Consensus 366 ~~~iGR~~~~~~~~~~i~~~~~-~vSr~Ha~i~~-~~~~~~i~D~~S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g 443 (475)
.++|||++.|+ |+++++ .|||.||+|.+ .++.|+|+|+ |+|||||||. ++.++.++.|++||+|+||
T Consensus 37 ~~~IGR~~~~d-----i~l~~~~~vSr~Ha~i~~~~~g~~~l~Dl-S~NGT~vNg~-----~l~~~~~~~L~~Gd~I~lG 105 (127)
T 1g6g_A 37 VWTFGRNPACD-----YHLGNISRLSNKHFQILLGEDGNLLLNDI-STNGTWLNGQ-----KVEKNSNQLLSQGDEITVG 105 (127)
T ss_dssp EEEEESSTTSS-----EECCSCTTSCSSCEEEEECTTSCEEEEEC-CSSCCEETTE-----ECCTTCCEECCTTCEEEEC
T ss_pred CEEECCCCCCC-----EEeCCCCCCChhHeEEEECCCCcEEEEEC-CcCCeEECCE-----EcCCCCeEEcCCCCEEEEC
Confidence 59999999887 999997 69999999999 4889999999 9999999999 9999889999999999999
Q ss_pred CCc---eEEEEEEEe
Q 011888 444 SDK---KAIFRVKVI 455 (475)
Q Consensus 444 ~~~---~~~~~~~~~ 455 (475)
.+. .+.|.|+..
T Consensus 106 ~~~~~~~i~f~~~~~ 120 (127)
T 1g6g_A 106 VGVESDILSLVIFIN 120 (127)
T ss_dssp TTSGGGCEEEEEEEC
T ss_pred CCccCceEEEEEEeC
Confidence 962 445666654
No 54
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.64 E-value=4.8e-16 Score=155.25 Aligned_cols=88 Identities=25% Similarity=0.324 Sum_probs=78.3
Q ss_pred ccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEECCeEEEEEcCCccceeeccCCCceeecCCCCcEE
Q 011888 354 QPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPAR 433 (475)
Q Consensus 354 ~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn~~~~~~~~~~~~~~~~ 433 (475)
+.+.|. ...++|||+++|+ |+++++.|||.||+|.++++.|+|+|++|+|||||||+ ++. .++.
T Consensus 299 ~~~~l~----~~~~~iGR~~~~d-----i~l~~~~vSr~Ha~i~~~~~~~~l~Dl~S~nGt~vng~-----~i~--~~~~ 362 (388)
T 2ff4_A 299 RGYPLQ----AAATRIGRLHDND-----IVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHE-----RIR--SAVT 362 (388)
T ss_dssp CEEECC----SSEEEEESSTTSS-----EECCCTTSCTTCEEEEECSSCEEEEECSCSSCCEETTE-----ECS--SEEE
T ss_pred cEEEEC----CCCEEEecCCCCe-----EEECCCccChhHeEEEEECCEEEEEECCCCCCeEECCE-----ECC--CceE
Confidence 889998 4459999999887 99999999999999999999999999999999999999 885 4789
Q ss_pred eCCCCEEEeCCCceEEEEEEEeccCCC
Q 011888 434 FRPSDTIEFGSDKKAIFRVKVIGTPPN 460 (475)
Q Consensus 434 l~~gd~i~~g~~~~~~~~~~~~~~~~~ 460 (475)
|++||+|+||+. .|+|......|.
T Consensus 363 L~~gd~i~~G~~---~~~~~~~~~~p~ 386 (388)
T 2ff4_A 363 LNDGDHIRICDH---EFTFQISAGTHG 386 (388)
T ss_dssp ECTTCEEEETTE---EEEEECSCCCCC
T ss_pred CCCCCEEEECCE---EEEEEeCCCCCC
Confidence 999999999997 777777655553
No 55
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.58 E-value=8.1e-15 Score=120.27 Aligned_cols=92 Identities=27% Similarity=0.470 Sum_probs=73.5
Q ss_pred EEEecCCCCccccc--EEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEE-CCeEEEEEcCCccceeecc
Q 011888 342 FLVPSGSENVVSQP--IYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK-DGAFYLIDLQSEHGTYVTD 418 (475)
Q Consensus 342 ~~~~~~~~~~~~~~--~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~-~~~~~i~D~~S~nGt~vn~ 418 (475)
+|+...+....+.. ++|. +. .+|||.+.+| |+++++.||++||+|... ++.|+|+|++ +|||||||
T Consensus 28 hLvnLn~Dp~~s~~l~y~L~--~~---t~IGR~~~~D-----I~L~~~~Vs~~Ha~I~~~~~g~~~l~dl~-~ngt~VNG 96 (124)
T 3fm8_A 28 FLVNLNADPALNELLVYYLK--EH---TLIGSANSQD-----IQLCGMGILPEHCIIDITSEGQVMLTPQK-NTRTFVNG 96 (124)
T ss_dssp EEEETTCCTTSSCCCEEECC--SE---EEEESSTTCS-----EECCSTTCCSSCEEEEECTTSCEEEEECT-TCCEEETT
T ss_pred EEEEeCCCCccCceEEEECC--CC---eEECCCCCCC-----EEECCCCeecceEEEEECCCCeEEEEECC-CCCEEECC
Confidence 66666555443333 3343 33 8999999887 999999999999999984 8889999995 79999999
Q ss_pred CCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEE
Q 011888 419 NEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVK 453 (475)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~ 453 (475)
+ ++. +++.|++||.|.||... .|+|.
T Consensus 97 ~-----~V~--~~~~L~~GD~I~lG~~~--~FrFn 122 (124)
T 3fm8_A 97 S-----SVS--SPIQLHHGDRILWGNNH--FFRLN 122 (124)
T ss_dssp E-----ECC--SCEEECTTCEEEETTTE--EEEEE
T ss_pred E-----EcC--CcEECCCCCEEEECCCe--EEEEE
Confidence 9 886 47899999999999873 56553
No 56
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.57 E-value=1.2e-14 Score=124.89 Aligned_cols=98 Identities=22% Similarity=0.356 Sum_probs=74.5
Q ss_pred EEEecCCCCccc--ccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEECC----eEEEEEcCCcccee
Q 011888 342 FLVPSGSENVVS--QPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDG----AFYLIDLQSEHGTY 415 (475)
Q Consensus 342 ~~~~~~~~~~~~--~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~----~~~i~D~~S~nGt~ 415 (475)
.|+...+....+ -.+.|. + +.++|||.+.. ..|||+++++.||++||.|.++++ .+++.|++|+||||
T Consensus 40 hLvnLn~Dp~ls~~lvy~L~-~---g~t~IGR~~~~--~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt~ 113 (154)
T 4ejq_A 40 HLVNLNEDPLMSECLLYYIK-D---GITRVGREDGE--RRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTY 113 (154)
T ss_dssp EEEECCCCTTCSSEEEEECC-S---EEEEEECSSCS--SCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCEE
T ss_pred eEEEecCCcccCceEEEEeC-C---CCEEEcCCCCC--CCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCceE
Confidence 455554443332 235666 4 44999998632 126699999999999999999853 58999999999999
Q ss_pred eccCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEE
Q 011888 416 VTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKV 454 (475)
Q Consensus 416 vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~ 454 (475)
|||. ++. .++.|++||.|.||... .|+|..
T Consensus 114 VNG~-----~i~--~~~~L~~GD~I~~G~~~--~Frf~~ 143 (154)
T 4ejq_A 114 VNGK-----KVT--EPSILRSGNRIIMGKSH--VFRFNH 143 (154)
T ss_dssp ETTE-----ECC--SCEECCTTCEEEETTTE--EEEEEC
T ss_pred ECCE-----EcC--CceECCCCCEEEECCcE--EEEEcC
Confidence 9999 885 46899999999999873 477754
No 57
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=99.57 E-value=6.4e-15 Score=137.13 Aligned_cols=101 Identities=23% Similarity=0.336 Sum_probs=78.8
Q ss_pred cEEEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEE-----------CCeEEEEEc
Q 011888 340 EWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK-----------DGAFYLIDL 408 (475)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~-----------~~~~~i~D~ 408 (475)
-|+|.+.++.. .++.+.|. +++ ++|||...++. ++|+++|++|||+||+|.+. ...++|+|+
T Consensus 1 MWiL~~~~d~~-~Gkr~~L~-pg~---YlIGR~~~~~~--~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DL 73 (325)
T 3huf_A 1 MWIIEAEGDIL-KGKSRILF-PGT---YIVGRNVSDDS--SHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDL 73 (325)
T ss_dssp CEEEEESTTTT-TTCCEEEC-SEE---EEEESSCCCBT--TEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEEC
T ss_pred CcEEeccCccC-CCeEEEec-CCe---EEECCCCCccC--ceeecCCCCccccceEEEEecccccccccCCcceEEEEEC
Confidence 39999876432 23889998 555 99999987531 23588999999999999886 236999999
Q ss_pred CCccceeeccCCCceeecCCCCcEEe-CCCCEEEeCCCceEEEEEEE
Q 011888 409 QSEHGTYVTDNEGRRYRVSSNFPARF-RPSDTIEFGSDKKAIFRVKV 454 (475)
Q Consensus 409 ~S~nGt~vn~~~~~~~~~~~~~~~~l-~~gd~i~~g~~~~~~~~~~~ 454 (475)
+|+|||||||. ++++. .+.| .+||.|+||.. ...|+++-
T Consensus 74 gSknGTfVNGe-----rI~~~-~~~L~~dgd~I~fG~~-~~~fRl~W 113 (325)
T 3huf_A 74 DTKFGTKVNEK-----VVGQN-GDSYKEKDLKIQLGKC-PFTINAYW 113 (325)
T ss_dssp SCSSCEEETTE-----ECCTT-CEEECSSEEEEEETTC-SSCEEEEE
T ss_pred CCCCCEEECCE-----ECCCc-eeeecCCCCEEEecCC-cceEEEEE
Confidence 99999999999 99654 4566 47999999997 33565554
No 58
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=99.36 E-value=2.6e-13 Score=140.10 Aligned_cols=62 Identities=16% Similarity=0.129 Sum_probs=48.3
Q ss_pred CccccCCc-EEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhHHHH
Q 011888 168 IFTWGRGR-VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA 240 (475)
Q Consensus 168 ~~~~~~gr-vvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~ 240 (475)
+.+|..|| ++|+|||||...|..|||+|+||+||.+|+|+|+..+++. ....+| .+|++...
T Consensus 387 a~~~~~gRr~~l~Gda~~~~~~p~g~G~n~g~~~a~~l~~~l~~~~~g~-------~~~~~l----~~r~~~~~ 449 (497)
T 2bry_A 387 QEKHGARLLLGLVGDCLVEPFWPLGTGVARGFLAAFDAAWMVKRWAEGA-------GPLEVL----AERESLYQ 449 (497)
T ss_dssp EEETTEEEEEEECGGGTBCCCGGGCCHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHH----HHHHHHHT
T ss_pred HHhcCCcccceEeccccccCcCccccchhhHHHHHHHHHHHHHHHhCCC-------Cccchh----hhHHHHhh
Confidence 35788898 9999999994443399999999999999999999986542 234555 67776543
No 59
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=99.35 E-value=1.4e-12 Score=99.50 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=58.5
Q ss_pred CCCEEecCCCCCCCCCceeeeCCccccccceEEEEECCeEEEEEcCCccce-eeccCCCceeecCCCCcEEeCCCCE---
Q 011888 364 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGT-YVTDNEGRRYRVSSNFPARFRPSDT--- 439 (475)
Q Consensus 364 ~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt-~vn~~~~~~~~~~~~~~~~l~~gd~--- 439 (475)
...+.|||++.++ +.+++++||+.||.|...+.+.++. . |+||| ||||+ ++ .+..|.+||.
T Consensus 20 ~~~~rIGR~~~~~-----l~LddpsVs~~HAti~~~~~G~~~l-~-S~nGtVFVNGq-----rv---~~~~I~~gDtI~g 84 (102)
T 3uv0_A 20 DTIYRIGRQKGLE-----ISIADESMELAHATACILRRGVVRL-A-ALVGKIFVNDQ-----EE---TVVDIGMENAVAG 84 (102)
T ss_dssp TCCEEEESSTTST-----EECCCTTSCTTCEEEEEEETTEEEE-E-ESSSCEEETTE-----EE---SEEEECGGGCBTT
T ss_pred CcEEEEcCCCCCc-----EEECCcccccceEEEEecCCceEEE-E-eccCcEEECCE-----Ee---eeEEccCCccccc
Confidence 6679999999988 9999999999999998876555553 3 99995 99999 88 3789999999
Q ss_pred ---EEeCCC
Q 011888 440 ---IEFGSD 445 (475)
Q Consensus 440 ---i~~g~~ 445 (475)
++||+.
T Consensus 85 ~v~lrFGnv 93 (102)
T 3uv0_A 85 KVKLRFGNV 93 (102)
T ss_dssp EEEEEETTE
T ss_pred EEEEEecCE
Confidence 899998
No 60
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.34 E-value=1.2e-11 Score=96.75 Aligned_cols=94 Identities=16% Similarity=0.264 Sum_probs=75.6
Q ss_pred cEEEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEE--CCeEEEEEcCCccceeec
Q 011888 340 EWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DGAFYLIDLQSEHGTYVT 417 (475)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~--~~~~~i~D~~S~nGt~vn 417 (475)
..+|++..+.. .+|.|. .++ .++|||++.+. +.|..+||+|+.|..+ .+.+.|+++ ++|+|+||
T Consensus 4 ~c~L~~~~~~~---~~I~L~-~g~--~v~iGR~p~t~-------I~DkrcSR~h~~L~~~~~~g~v~vk~l-g~Np~~vn 69 (102)
T 3kt9_A 4 VCWLVRQDSRH---QRIRLP-HLE--AVVIGRGPETK-------ITDKKCSRQQVQLKAECNKGYVKVKQV-GVNPTSID 69 (102)
T ss_dssp EEEEEETTSTT---CEEECC-BTC--EEEECSSTTTC-------CCCTTSCSSCEEEEEETTTTEEEEEEC-SSSCCEET
T ss_pred eEEEEecCCCC---CcEEcC-CCC--cEEeccCCccc-------cccCcccCcceEEEEecCCCEEEEEEC-cCCCCeEC
Confidence 34667766432 789998 443 45689999774 3689999999999998 567899999 59999999
Q ss_pred cCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEE
Q 011888 418 DNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVK 453 (475)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~ 453 (475)
|+ ++.++..+.|++||+|.+-.. ...|++.
T Consensus 70 g~-----~l~k~~~~~L~~GD~l~Ll~~-~~~~~v~ 99 (102)
T 3kt9_A 70 SV-----VIGKDQEVKLQPGQVLHMVNE-LYPYIVE 99 (102)
T ss_dssp TE-----ECCBTCEEEECTTCCEEEETT-EEEEEEE
T ss_pred CE-----EcCCCCeEEeCCCCEEEEccC-CceEEEE
Confidence 99 999999999999999999998 3344443
No 61
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=99.32 E-value=6.8e-12 Score=100.95 Aligned_cols=96 Identities=17% Similarity=0.280 Sum_probs=78.6
Q ss_pred CcEEEEecCCCCcccccEEEeecCCCCCEEecCCC-CCCCCCceeeeCCccccccceEEEEECCeEEEEEcCCccceeec
Q 011888 339 GEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSES-HEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVT 417 (475)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~-~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn 417 (475)
..|-+....+. ..+..++|. ...++||.++ .|| |++.|+.||+.||+|.+.+++|+|+ +|.||||+|
T Consensus 3 ~~~klrvlsG~-~~G~~l~L~----~~~~~IGs~~~~~D-----LvL~D~~Vs~~H~~L~~~~~g~~L~--~s~ngt~vd 70 (123)
T 4a0e_A 3 GSWVCRFYQGK-HRGVEVELP----HGRCVFGSDPLQSD-----IVLSDSEIAPVHLVLMVDEEGIRLT--DSAEPLLQE 70 (123)
T ss_dssp CCEEEEECSGG-GTTCEEEEC----SEEEEEESCTTTCS-----EECCCTTSCSSCEEEEEETTEEEEE--EESSCCEET
T ss_pred ceEEEEEecCC-CCCcEEEcC----CCcEEECCCCCCCC-----EEEeCCCccceeEEEEECCCeEEEE--eccCCEEEC
Confidence 45754444333 233789998 4559999999 888 9999999999999999999999998 699999999
Q ss_pred cCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEEec
Q 011888 418 DNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIG 456 (475)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~~~ 456 (475)
|. ++.++. .|.+|+.+++|.. .|.|-..+
T Consensus 71 G~-----~v~~~~--~L~~g~~l~lG~~---~l~~~~~~ 99 (123)
T 4a0e_A 71 GL-----PVPLGT--LLRAGSCLEVGFL---LWTFVAVG 99 (123)
T ss_dssp TE-----ECCTTC--BCCTTSCEEETTE---EEEEEETT
T ss_pred CE-----Eccccc--ccCCCCEEEEccE---EEEEEcCC
Confidence 99 876543 8999999999998 77766653
No 62
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=99.20 E-value=1.6e-10 Score=91.29 Aligned_cols=99 Identities=12% Similarity=0.233 Sum_probs=74.9
Q ss_pred cCCcEEEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEE--CCeEEEEEcCCccce
Q 011888 337 MNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DGAFYLIDLQSEHGT 414 (475)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~--~~~~~i~D~~S~nGt 414 (475)
.....+|++..+. . ..|.|. . ..+.++|||++.. .+.|..+||+|+.|..+ ++.+.|+++ ++|+|
T Consensus 6 ~~~~c~L~~~~~~-~--~~I~Lp-~-~~g~~viGR~p~t-------~I~DkrcSR~hv~L~ad~~~~~v~vk~l-G~Np~ 72 (110)
T 2brf_A 6 APGRLWLESPPGE-A--PPIFLP-S-DGQALVLGRGPLT-------QVTDRKCSRTQVELVADPETRTVAVKQL-GVNPS 72 (110)
T ss_dssp --CEEEEECSTTS-S--CCEECC-S-TTCCEEECSBTTT-------TBCCTTSCSSCEEEEEETTTTEEEEEEC-SSSCC
T ss_pred cCcEEEEEeCCCC-C--CcEEec-c-CCCCEEEcCCCCc-------ccccccceeeeEEEEEecCCCEEEEEEc-ccCCc
Confidence 3444566676644 1 577772 1 1355999999955 46789999999999987 678999998 79999
Q ss_pred eeccCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEE
Q 011888 415 YVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKV 454 (475)
Q Consensus 415 ~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~ 454 (475)
++||. ++.++..+.|++||+|.+=.. ...|++..
T Consensus 73 ~vng~-----~l~k~~~~~L~~GD~leLl~g-~y~~~v~f 106 (110)
T 2brf_A 73 TTGTQ-----ELKPGLEGSLGVGDTLYLVNG-LHPLTLRW 106 (110)
T ss_dssp EEC-C-----BCCTTCEEEEETTCEEEEETT-EEEEEEEE
T ss_pred EECCE-----EcCCCCEEEecCCCEEEEccC-CeEEEEEe
Confidence 99999 999999999999999999766 33455444
No 63
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.18 E-value=3.8e-11 Score=121.23 Aligned_cols=101 Identities=18% Similarity=0.254 Sum_probs=79.6
Q ss_pred hcCCcE-EEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccc---------cccceEEEEE--CC--
Q 011888 336 AMNGEW-FLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQV---------SKMHARISYK--DG-- 401 (475)
Q Consensus 336 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~v---------Sr~Ha~i~~~--~~-- 401 (475)
.....| .|++...+ . ..+.|. .++ ++|||++.|+ ++++++.| ||.||+|+++ ..
T Consensus 5 ~~~~~~g~l~~~~~~-~--~~~~l~-~~~---~~iGR~~~~~-----~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~ 72 (419)
T 3i6u_A 5 PTPAPWARLWALQDG-F--ANLECV-NDN---YWFGRDKSCE-----YCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNS 72 (419)
T ss_dssp -CCCCSEEEEECSSS-S--CCEEEC-SSE---EEEESSTTSS-----EETTCTTGGGCSGGGGSCTTCEEEECCEETTTE
T ss_pred ccCCCceEeeecCCC-C--CceEec-CCC---EEecCCCccC-----EEECCcccccccccccccccceEEEEEcCCCCc
Confidence 334467 55555543 2 678888 445 9999998887 99999866 9999999765 22
Q ss_pred -eEEEEEcCCccceeeccCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEE
Q 011888 402 -AFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKV 454 (475)
Q Consensus 402 -~~~i~D~~S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~ 454 (475)
.|+|+| .|+||||||+. ++.++....|.+||.|.+|.+....|.+..
T Consensus 73 ~~~~i~D-~S~nGt~vn~~-----~~~~~~~~~l~~~d~i~~~~~~~~~~~~~~ 120 (419)
T 3i6u_A 73 YIAYIED-HSGNGTFVNTE-----LVGKGKRRPLNNNSEIALSLSRNKVFVFFD 120 (419)
T ss_dssp ECCEEEE-CCSSCEEETTE-----ECCTTCEEECCTTEEEEESSTTCEEEEEEE
T ss_pred eEEEEEE-CCcCCceECcc-----cccCCCcccCCCCCEeeeeccccceEEEec
Confidence 299999 79999999999 999999999999999999998655665543
No 64
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=99.04 E-value=1.6e-09 Score=88.67 Aligned_cols=98 Identities=11% Similarity=0.212 Sum_probs=75.4
Q ss_pred CCcEEEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEE--CCeEEEEEcCCcccee
Q 011888 338 NGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DGAFYLIDLQSEHGTY 415 (475)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~--~~~~~i~D~~S~nGt~ 415 (475)
.+..+|++..++ . ..|.|. . ..+.++|||++.. .+.|..+||+|+.|..+ ++.+.|.++ ++|+|+
T Consensus 7 ~~~c~L~p~d~~-~--~~I~Lp-~-~~g~vvIGRgPet-------~ItDkRcSR~qv~L~ad~~~g~V~Vk~l-G~NP~~ 73 (143)
T 1yj5_C 7 RGRLWLQSPTGG-P--PPIFLP-S-DGQALVLGRGPLT-------QVTDRKCSRNQVELIADPESRTVAVKQL-GVNPST 73 (143)
T ss_dssp CEEEEEECCTTS-C--CCEECC-T-TTCEEEECSBTTT-------TBCCSSSCSSCEEEEEETTTTEEEEEEC-SSSCCE
T ss_pred CCeEEEEecCCC-C--CcEEec-c-CCCCEEEcCCCcc-------ccccccccceeEEEEEecCCCeEEEEEc-ccCCcE
Confidence 344567776644 2 567772 1 1355999999955 57789999999999987 578889998 689999
Q ss_pred eccCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEE
Q 011888 416 VTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKV 454 (475)
Q Consensus 416 vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~ 454 (475)
|||. +|.++..+.|++||+|.|=.. ...|+|..
T Consensus 74 vng~-----~L~k~~~~~L~~GD~LeLl~g-~y~f~V~f 106 (143)
T 1yj5_C 74 VGVH-----ELKPGLSGSLSLGDVLYLVNG-LYPLTLRW 106 (143)
T ss_dssp ETTE-----ECCTTCEEEECTTCEEESSSS-CSEEEEEE
T ss_pred ECCE-----EecCCCEEEecCCCEEEEecC-CceEEEEe
Confidence 9999 999999999999999997665 22455444
No 65
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.01 E-value=4.6e-10 Score=89.77 Aligned_cols=97 Identities=10% Similarity=0.185 Sum_probs=74.5
Q ss_pred cEEEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEE--CCeEEEEEcCCccceeec
Q 011888 340 EWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DGAFYLIDLQSEHGTYVT 417 (475)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~--~~~~~i~D~~S~nGt~vn 417 (475)
..+|+|..... ..|.|. . ..+.++|||.+.. .+.|..+||+|+.+..+ ++.+.|+++ ++|+|+||
T Consensus 16 ~c~L~~~~~~~---~~I~Lp-~-~~g~~viGRgp~t-------~I~DkrcSR~qv~L~ad~~~~~v~vk~l-G~NP~~vn 82 (119)
T 1ujx_A 16 RLWLQSPTGGP---PPIFLP-S-DGQALVLGRGPLT-------QVTDRKCSRNQVELIADPESRTVAVKQL-GVNPSTVG 82 (119)
T ss_dssp CEEEECCSSSC---CCCCCC-T-TSCCEEESBBTTT-------TBCCTTSCTTSEEEEEETTTTEEEEEEC-SSSCCBSS
T ss_pred eEEEEeCCCCC---CcEEec-c-CCCCEEEcCCCCc-------ccccccccceeEEEEEecCCCEEEEEEc-ccCCcEEC
Confidence 44666766431 466663 1 1355999999955 56799999999999987 578999998 68999999
Q ss_pred cCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEEe
Q 011888 418 DNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI 455 (475)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~~ 455 (475)
+. +|.++..+.|++||.|.+=.. ...|+|...
T Consensus 83 g~-----~l~k~~~~~L~~GD~l~Ll~g-~y~~~v~f~ 114 (119)
T 1ujx_A 83 VQ-----ELKPGLSGSLSLGDVLYLVNG-LYPLTLRWS 114 (119)
T ss_dssp SS-----BCCTTCEEEEETTCCCBCBTT-BSCCEEEEC
T ss_pred CE-----EecCCCEEEecCCCEEEEecC-CeEEEEEec
Confidence 99 999999999999999997665 224554443
No 66
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=99.00 E-value=1.9e-09 Score=94.77 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=67.2
Q ss_pred ccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEEC-----CeEEEEEcCCccceeeccCCCceeecCC
Q 011888 354 QPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKD-----GAFYLIDLQSEHGTYVTDNEGRRYRVSS 428 (475)
Q Consensus 354 ~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~-----~~~~i~D~~S~nGt~vn~~~~~~~~~~~ 428 (475)
-.++|. ++. .+|||..... .+||++..+.|++.||.|..++ +.++|.++ +.+.|||||. +|.
T Consensus 84 l~y~L~-~g~---t~VGr~~~~~--~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~-~~a~t~VNG~-----~I~- 150 (184)
T 4egx_A 84 LLYYIK-DGI---TRVGREDGER--RQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPC-EGADTYVNGK-----KVT- 150 (184)
T ss_dssp SEEECC-SEE---EEEECSSSSS--CCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEEC-TTCCEEETTE-----ECC-
T ss_pred EEEEEC-CCc---CcCCCCCcCC--CCeEEECccccccccEEEEEcCCCCceEEEEEeeC-CCCeEEEcCE-----Ecc-
Confidence 346666 444 9999976432 2669999999999999999863 34788876 6788999999 886
Q ss_pred CCcEEeCCCCEEEeCCCceEEEEEEEe
Q 011888 429 NFPARFRPSDTIEFGSDKKAIFRVKVI 455 (475)
Q Consensus 429 ~~~~~l~~gd~i~~g~~~~~~~~~~~~ 455 (475)
.++.|++||.|.||... .|+|..+
T Consensus 151 -~~~~L~~GDrI~lG~~h--~Frfn~P 174 (184)
T 4egx_A 151 -EPSILRSGNRIIMGKSH--VFRFNHP 174 (184)
T ss_dssp -SCEECCTTCEEEETTTE--EEEEECH
T ss_pred -ccEEcCCCCEEEECCCC--EEEECCh
Confidence 57899999999999973 5777543
No 67
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=98.97 E-value=1.9e-09 Score=105.03 Aligned_cols=189 Identities=11% Similarity=-0.071 Sum_probs=102.6
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEE-ecEEEEecCCCCcccccccC------CCCCcccceEEEEEEeccCCCCc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYA-GDLLIGADGIWSKVRKNLFG------PQEAIYSGYTCYTGIADFVPADI 86 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~-adlvVGADG~~S~vR~~l~~------~~~~~~~~~~~~~~~~~~~~~~~ 86 (475)
..|+++++|++++.++++++|++.+|+.+. +|+||+|||.+|.+|..... .....|.. ++...+.+ +.+.
T Consensus 120 ~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~a~~vV~a~g~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~-~~~~ 196 (336)
T 1yvv_A 120 MPVSFSCRITEVFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQASTLLAAAPKLASVVAGVKMDP--TWAVALAF-ETPL 196 (336)
T ss_dssp CCEECSCCEEEEEECSSCEEEEETTSCEEEEESEEEECSCHHHHGGGGTTCHHHHHHHTTCCEEE--EEEEEEEE-SSCC
T ss_pred CcEEecCEEEEEEEeCCEEEEEeCCCcCccccCEEEEcCCHHHHHHhhccCHHHHHHHhhcCccc--eeEEEEEe-cCCC
Confidence 369999999999999999999999998764 99999999999999965311 12344543 22222111 1112
Q ss_pred CCcceEEEecCceEEEEE-----eCCCCe-EEEEEEEeCC--CCC-CCCCcchHHHHHHHhhCCChHHHHHHHhCCccce
Q 011888 87 ESVGYRVFLGHKQYFVSS-----DVGAGK-MQWYAFHKEP--AGG-VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAI 157 (475)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~--~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 157 (475)
......++...+...+++ |...+. ..|++..... ... ...++...+.+.+.+....... .........
T Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~~---~~~p~~~~~ 273 (336)
T 1yvv_A 197 QTPMQGCFVQDSPLDWLARNRSKPERDDTLDTWILHATSQWSRQNLDASREQVIEHLHGAFAELIDCT---MPAPVFSLA 273 (336)
T ss_dssp SCCCCEEEECSSSEEEEEEGGGSTTCCCSSEEEEEEECHHHHHHTTTSCHHHHHHHHHHHHHTTCSSC---CCCCSEEEE
T ss_pred CCCCCeEEeCCCceeEEEecCcCCCCCCCCcEEEEEeCHHHHHHHHhCCHHHHHHHHHHHHHHHhCCC---CCCCcEEEc
Confidence 222223344444443332 222332 3444433210 000 0111223344444444332110 000000111
Q ss_pred eec----ccccCCCCccc-cCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhc
Q 011888 158 LRR----DIYDRTPIFTW-GRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKK 214 (475)
Q Consensus 158 ~~~----~~~~~~~~~~~-~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~ 214 (475)
..| +.+.......| ..+|++|+|||+|. .|+|.|++|+..||+.|.+.++.
T Consensus 274 ~rw~~a~~~~~~~~~~~~~~~~rl~laGDa~~g------~gv~~a~~sg~~lA~~l~~~~~~ 329 (336)
T 1yvv_A 274 HRWLYARPAGAHEWGALSDADLGIYVCGDWCLS------GRVEGAWLSGQEAARRLLEHLQL 329 (336)
T ss_dssp EEEEEEEESSCCCCSCEEETTTTEEECCGGGTT------SSHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCccCCCCCCCCCeeecCCCCEEEEecCCCC------CCHHHHHHHHHHHHHHHHHHhhh
Confidence 222 11111111222 34999999999974 49999999999999999988654
No 68
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=98.60 E-value=4.2e-08 Score=90.22 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=55.3
Q ss_pred CEEecCCCCCCCCCceeeeCCccccccceEEEEE--C--CeEEEEEcCCccce-eeccCCCceeecCCCCcEEeC-CCCE
Q 011888 366 PYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--D--GAFYLIDLQSEHGT-YVTDNEGRRYRVSSNFPARFR-PSDT 439 (475)
Q Consensus 366 ~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~--~--~~~~i~D~~S~nGt-~vn~~~~~~~~~~~~~~~~l~-~gd~ 439 (475)
.++|||.+.++ |++++. + |+.+.++ + +.|+|+|++|+||| ||||+ ++. ....|+ +||.
T Consensus 93 ~itIG~~~~~d-----I~l~~~-~---~~~~~~~~~~~~~~~~l~~l~s~ngtvyvNg~-----~i~--~~~~L~~~GD~ 156 (238)
T 1wv3_A 93 TMTIGPNAYDD-----MVIQSL-M---NAIIIKDFQSIQESQYVRIVHDKNTDVYINYE-----LQE--QLTNKAYIGDH 156 (238)
T ss_dssp EEEEESSTTSS-----EECTTC-S---SCEEEECGGGHHHHCEEEEECCTTCCEEETTE-----ECC--SSEEEEETTCE
T ss_pred eEEEeCCCCCe-----EEeCCC-e---eEEEEecccCcCCcEEEEEccCCCCCEEECCE-----Eec--cceeccCCcCE
Confidence 69999999888 999888 3 6877777 3 58999999999996 99999 886 356899 9999
Q ss_pred EEeCCC
Q 011888 440 IEFGSD 445 (475)
Q Consensus 440 i~~g~~ 445 (475)
|.+|+.
T Consensus 157 I~ig~~ 162 (238)
T 1wv3_A 157 IYVEGI 162 (238)
T ss_dssp EEETTE
T ss_pred EEECCE
Confidence 999987
No 69
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=97.93 E-value=1.7e-05 Score=78.32 Aligned_cols=188 Identities=13% Similarity=0.071 Sum_probs=98.3
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc-ccccccCCCCCcccceEEEEEEe
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK-VRKNLFGPQEAIYSGYTCYTGIA 79 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~-vR~~l~~~~~~~~~~~~~~~~~~ 79 (475)
|.+.|.+.+. ...++++++|++++.+++++.|++.+| +++||.||.|+|.+|. +.+.+ +...+.+. ........
T Consensus 166 ~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~-~~~~~~~~-~~g~~~~~ 242 (382)
T 1ryi_A 166 VCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQL-GLNNAFLP-VKGECLSV 242 (382)
T ss_dssp HHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHT-TCCCCCEE-EEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHHHHHHhc-CCCCceec-cceEEEEE
Confidence 4455555543 247899999999998888888888777 8999999999999987 66654 21111111 11111111
Q ss_pred ccCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCCccceee
Q 011888 80 DFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILR 159 (475)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
........ ..++ ..+ ..+.|..++.+.+..................+.+.+.+..+.|.+.. .. ....
T Consensus 243 ~~~~~~~~---~~~~-~~~--~~~~p~~~g~~~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~----~~--~~~~ 310 (382)
T 1ryi_A 243 WNDDIPLT---KTLY-HDH--CYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQN----MK--VDRF 310 (382)
T ss_dssp ECCSSCCC---SEEE-ETT--EEEEECTTSEEEEECCCEETCCCCSCCHHHHHHHHHHHHHHCGGGGG----SE--EEEE
T ss_pred CCCCCCcc---ceEE-cCC--EEEEEcCCCeEEEeecccccCCCCCCCHHHHHHHHHHHHHhCCCcCC----Cc--eeeE
Confidence 11111111 1122 222 33345555544333211111111111122334444444433332211 00 0111
Q ss_pred cccccCCCCccccCCcEEEEcccc-----cccCCccccchhhhHHHHHHHHHHHHH
Q 011888 160 RDIYDRTPIFTWGRGRVTLLGDSV-----HAMQPNLGQGGCMAIEDGYQLAVELEK 210 (475)
Q Consensus 160 ~~~~~~~~~~~~~~grvvLvGDAA-----H~~~P~~GqG~n~al~Da~~La~~L~~ 210 (475)
|. ....+..++..++|++. +...+++|.|+.+|..-+..|++.|..
T Consensus 311 w~-----g~~~~t~d~~p~ig~~~~~~~l~~~~G~~g~G~~~a~~~g~~la~~i~~ 361 (382)
T 1ryi_A 311 WA-----GLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMN 361 (382)
T ss_dssp EE-----EEEEECSSSCCEEEEETTEEEEEEEECCSSCTTTTHHHHHHHHHHHHTT
T ss_pred EE-----EecccCCCCCcEeccCCCcCCEEEEEcCCcchHHHhHHHHHHHHHHHhC
Confidence 11 11123456677788864 446788999999999999888887753
No 70
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=97.89 E-value=8.9e-06 Score=80.98 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=44.2
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCe-EEEEEcCCcEEEecEEEEecCCCC-cccccc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWS-KVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~-v~v~~~dG~~~~adlvVGADG~~S-~vR~~l 61 (475)
+.+.|.+.+. ...++++++|++++.++++ +.|++.+| +++||.||.|+|.+| .+++.+
T Consensus 176 ~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~ 237 (405)
T 2gag_B 176 VAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHSSVLAEMA 237 (405)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhHHHHHHHc
Confidence 4445555543 2478999999999987665 45777777 799999999999998 677665
No 71
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=97.44 E-value=0.00026 Score=69.65 Aligned_cols=58 Identities=14% Similarity=0.249 Sum_probs=44.6
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCeEE-EEEcCCcEEEecEEEEecCCCC-cccccc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWS-KVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~-v~~~dG~~~~adlvVGADG~~S-~vR~~l 61 (475)
+.+.|.+.+. ...++.+++|++++.+++++. |++.+| +++||.||.|+|.+| .+.+.+
T Consensus 151 l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~ 212 (382)
T 1y56_B 151 ATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMA 212 (382)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHHHHc
Confidence 3444555443 247899999999998888887 888777 899999999999998 455544
No 72
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=97.22 E-value=0.00088 Score=71.41 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=45.1
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
|.+.|.+.+. ..+++++++|++++.++++|.|++.+|.+++||.||.|+|.+|.
T Consensus 419 l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~ 474 (676)
T 3ps9_A 419 LTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQIS 474 (676)
T ss_dssp HHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGG
T ss_pred HHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchh
Confidence 4455555543 24799999999999999999999988889999999999999986
No 73
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=97.22 E-value=0.00078 Score=66.31 Aligned_cols=53 Identities=26% Similarity=0.411 Sum_probs=41.8
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
+.+.|.+.+. ...++++++|++++.+++++.|++.+| +++||.||.|+|.+|.
T Consensus 152 ~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 206 (389)
T 2gf3_A 152 CIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNS 206 (389)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHH
T ss_pred HHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccHH
Confidence 3445555543 247899999999998888888887666 7999999999999875
No 74
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=97.11 E-value=0.01 Score=60.42 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=41.0
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCeEE-EEEcCCcEEEecEEEEecCCCCcccccc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~-v~~~dG~~~~adlvVGADG~~S~vR~~l 61 (475)
|-+.|.+.+.+ .+|+++++|++|..++++++ |+++||++++||.||.+=+..-..++.+
T Consensus 223 l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll 284 (501)
T 4dgk_A 223 LVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLL 284 (501)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC---------
T ss_pred hHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhc
Confidence 44556665543 48999999999999999876 8999999999999997666666666555
No 75
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=97.07 E-value=0.00075 Score=72.13 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=43.6
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEcCCc-EEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQ-CYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~dG~-~~~adlvVGADG~~S~ 56 (475)
|.+.|.+.+. ..+++++++|++++.+++++.|++.+|+ +++||.||.|.|.+|.
T Consensus 414 l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~ 470 (689)
T 3pvc_A 414 LTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLP 470 (689)
T ss_dssp HHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTT
T ss_pred HHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchh
Confidence 4455555543 2479999999999998888999998887 8999999999999985
No 76
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=96.97 E-value=0.017 Score=58.21 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=47.5
Q ss_pred hHHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 2 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
.|.+.|.+.+....|+++++|++|+.++++++|++.+|++++||.||.|=......+
T Consensus 236 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~~~~ 292 (470)
T 3i6d_A 236 TLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAAAG 292 (470)
T ss_dssp HHHHHHHHTCCSEEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHHHHH
Confidence 355667776665679999999999998889999999999999999999988776443
No 77
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=96.96 E-value=0.004 Score=63.77 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=43.1
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEc---CCc--EEEecEEEEecCCCCc-cccc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLE---NGQ--CYAGDLLIGADGIWSK-VRKN 60 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~---dG~--~~~adlvVGADG~~S~-vR~~ 60 (475)
|...|.+.+. ...++.+++|+++..+++.+.|++. +|+ +++||.||.|+|.+|. +++.
T Consensus 151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~~ 216 (501)
T 2qcu_A 151 LVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDD 216 (501)
T ss_dssp HHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHHH
Confidence 3445555443 2478899999999987776667764 575 7999999999999985 5553
No 78
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=96.85 E-value=0.0066 Score=58.90 Aligned_cols=59 Identities=10% Similarity=0.150 Sum_probs=45.4
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCe-EEEEEcCC--cEEEecEEEEecCCCC-cccccc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDK-VSVVLENG--QCYAGDLLIGADGIWS-KVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~-v~v~~~dG--~~~~adlvVGADG~~S-~vR~~l 61 (475)
|.+.|.+.+. ..+++++++|++++.++++ +.|++.+| .+++||.||.|+|.+| .+.+.+
T Consensus 152 ~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~ 216 (369)
T 3dme_A 152 LMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRI 216 (369)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHHHHHHTE
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcchHHHHHHh
Confidence 4455555543 2479999999999988766 88888888 4899999999999998 444444
No 79
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=96.79 E-value=0.0042 Score=60.68 Aligned_cols=58 Identities=17% Similarity=0.361 Sum_probs=45.1
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc-ccccc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK-VRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~-vR~~l 61 (475)
+.+.|.+.+. ...++++++|++++.+++++.|++.+| +++||.||.|.|.+|. +.+.+
T Consensus 156 ~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~ 216 (381)
T 3nyc_A 156 LHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWCDAIAGLA 216 (381)
T ss_dssp HHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhHHHHHHHh
Confidence 3445555443 247899999999999888888988877 8999999999999984 44443
No 80
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=96.62 E-value=0.021 Score=56.26 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=44.7
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCC-Ccccccc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW-SKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~-S~vR~~l 61 (475)
+.+.|.+.+. ...++++++|++++.++++|+|+..+| +++||.||.|+|.+ +.+++.+
T Consensus 155 ~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~s~~l~~~~ 215 (397)
T 2oln_A 155 TLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPYTNDLLEPL 215 (397)
T ss_dssp HHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGGHHHHHGGG
T ss_pred HHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcChHHHhhhc
Confidence 3445555443 247899999999998888888877665 79999999999998 4566655
No 81
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=96.09 E-value=0.0038 Score=57.22 Aligned_cols=37 Identities=19% Similarity=0.011 Sum_probs=33.5
Q ss_pred cCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhc
Q 011888 172 GRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKK 214 (475)
Q Consensus 172 ~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~ 214 (475)
..+||+|+|||+ +|.|++.|+.|+..+|+.|.++|+.
T Consensus 293 ~~~~v~l~GDa~------~g~gv~~A~~sG~~aA~~I~~~L~~ 329 (336)
T 3kkj_A 293 ADLGIYVCGDWC------LSGRVEGAWLSGQEAARRLLEHLQL 329 (336)
T ss_dssp TTTTEEECCGGG------TTSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeccc------CCcCHHHHHHHHHHHHHHHHHHhhc
Confidence 468999999996 4789999999999999999999875
No 82
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=95.94 E-value=0.0042 Score=53.90 Aligned_cols=57 Identities=18% Similarity=0.099 Sum_probs=44.9
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l 61 (475)
+.+.|.+.+. ...++++ +|++++.+++++.|++++| ++++|+||.|+|.+|.+++.+
T Consensus 58 ~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~~~~ 116 (180)
T 2ywl_A 58 LLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTLPSLL 116 (180)
T ss_dssp HHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCccccC
Confidence 3444555443 2468888 9999998877888988888 899999999999999876655
No 83
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=95.88 E-value=0.0071 Score=60.32 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=45.2
Q ss_pred hHHHHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 2 TLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 2 ~L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
++.+.|.+.+. ...++++++|++++.+++++.|++.+| +++||.||.|+|.+|.
T Consensus 133 ~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S~ 188 (417)
T 3v76_A 133 DIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKSI 188 (417)
T ss_dssp HHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSSC
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCccC
Confidence 35566666654 347999999999999888999999888 8999999999999994
No 84
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=95.78 E-value=0.0081 Score=60.51 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=43.6
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCe-EEEEEcCCcEEEecEEEEecCCCC
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWS 55 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~-v~v~~~dG~~~~adlvVGADG~~S 55 (475)
+.+.|.+.+. ..+++++++|+++..++++ +.|++.+|++++||.||.|+|.+|
T Consensus 136 l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 136 VVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS 191 (447)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence 4556666553 3479999999999987777 678888898899999999999999
No 85
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=95.52 E-value=0.018 Score=52.24 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=45.1
Q ss_pred HHHHHhhccCC--C-eEEcCcEEEEEEeeCCeE-EEEEcCCcEEEecEEEEecCCCCcccccc
Q 011888 3 LQQILAKAVGD--E-IILNESNVIDFKDHGDKV-SVVLENGQCYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~~--~-~i~~~~~v~~v~~~~~~v-~v~~~dG~~~~adlvVGADG~~S~vR~~l 61 (475)
+.+.|.+.+.. . .++ +++|+++..+++++ .|.+.+|++++||+||.|+|.+|..|..+
T Consensus 70 ~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~ 131 (232)
T 2cul_A 70 FHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFL 131 (232)
T ss_dssp HHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEE
T ss_pred HHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceec
Confidence 45556665532 3 455 57999999887775 57788898999999999999999998765
No 86
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=95.49 E-value=0.012 Score=60.78 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=43.1
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCeEE-EEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~-v~~~dG~~~~adlvVGADG~~S~ 56 (475)
+.+.|.+.+. ..+++++++|++++.+++++. |++.+|++++||+||.|||.+|.
T Consensus 222 l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 222 MIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSAR 278 (549)
T ss_dssp HHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence 3344544443 347999999999998877655 88899999999999999999995
No 87
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=95.43 E-value=0.15 Score=50.31 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=43.1
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCeEE-EEEcCCcEEEecEEEEecCCCCccc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~-v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
|-+.|.+.+.+ .+|+++++|++|..++++++ |++ +|++++||.||-|=|.....+
T Consensus 198 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~~~ 255 (425)
T 3ka7_A 198 IIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLGHAATAV 255 (425)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEE-CCEEEECCEEEECCCHHHHHH
Confidence 45556665543 48999999999999888876 655 588999999999988876654
No 88
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=95.32 E-value=0.12 Score=52.00 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=45.2
Q ss_pred HHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 3 L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
|-+.|.+.+....|+++++|++|+.++++++|++.+| +++||.||-|=+.....+
T Consensus 238 l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~~~~~ 292 (475)
T 3lov_A 238 LIERLEEVLERSEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHPQVVQ 292 (475)
T ss_dssp HHHHHHHHCSSCEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHHHHHH
T ss_pred HHHHHHhhccCCEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHHHHHH
Confidence 5566777776567999999999999999999999999 899999999977654433
No 89
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=95.13 E-value=0.24 Score=48.92 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=42.9
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
|-+.|.+.+.. .+|+++++|++|+.+++++ | ..+|++++||.||-|=|.....+
T Consensus 191 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V-~~~g~~~~ad~Vv~a~~~~~~~~ 246 (421)
T 3nrn_A 191 VIDELERIIMENKGKILTRKEVVEINIEEKKV-Y-TRDNEEYSFDVAISNVGVRETVK 246 (421)
T ss_dssp HHHHHHHHHHTTTCEEESSCCEEEEETTTTEE-E-ETTCCEEECSEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE-E-EeCCcEEEeCEEEECCCHHHHHH
Confidence 45566665543 4899999999999888888 6 56888999999999999876553
No 90
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=95.12 E-value=0.24 Score=50.11 Aligned_cols=55 Identities=7% Similarity=0.021 Sum_probs=44.0
Q ss_pred HHHHHhhccCC---CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 3 LQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 3 L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
|-+.|.+.+.. ..|+++++|++|+.++++++|++.+|++++||.||.|=|.....
T Consensus 257 l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~ 314 (495)
T 2vvm_A 257 FARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS 314 (495)
T ss_dssp HHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGGGG
T ss_pred HHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHh
Confidence 44555555543 34999999999998888899999999899999999999976543
No 91
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=94.87 E-value=0.024 Score=56.66 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=44.6
Q ss_pred HHHHHhhccC--CCeEEcCc---EEEEEEeeCCeEE-EEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVG--DEIILNES---NVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~---~v~~v~~~~~~v~-v~~~dG~~~~adlvVGADG~~S~ 56 (475)
+.+.|.+.+. ..++++++ +|+++..++++|+ |++.+|++++||.||.|.|.+|.
T Consensus 163 ~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~ 222 (438)
T 3dje_A 163 ALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAG 222 (438)
T ss_dssp HHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred HHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChh
Confidence 3445555543 24799999 9999999888888 99999989999999999999985
No 92
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=94.66 E-value=0.058 Score=50.50 Aligned_cols=59 Identities=12% Similarity=0.163 Sum_probs=42.9
Q ss_pred HHHHHhhccC---CCeEEcCcEEEEEEeeCCeE-EEEEc---------CC-----cEEEecEEEEecCCCCcccccc
Q 011888 3 LQQILAKAVG---DEIILNESNVIDFKDHGDKV-SVVLE---------NG-----QCYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v-~v~~~---------dG-----~~~~adlvVGADG~~S~vR~~l 61 (475)
+...|.+.+. ..+++++++|+++..+++.+ .|.+. +| .+++||+||.|+|.+|.++...
T Consensus 121 ~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~ 197 (284)
T 1rp0_A 121 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG 197 (284)
T ss_dssp HHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred HHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHH
Confidence 3445555542 23789999999999877754 23332 32 5799999999999999998765
No 93
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=94.51 E-value=0.15 Score=50.96 Aligned_cols=58 Identities=19% Similarity=0.358 Sum_probs=43.0
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEe---------------eCCeE-EEEEcCCcEE--EecEEEEecCCCCc-ccccc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKD---------------HGDKV-SVVLENGQCY--AGDLLIGADGIWSK-VRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~---------------~~~~v-~v~~~dG~~~--~adlvVGADG~~S~-vR~~l 61 (475)
+.+.|.+.+. ..+++++++|++++. ++++| .|.+.+| ++ +||.||.|.|.+|. +.+.+
T Consensus 183 l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~~l~~~~ 261 (448)
T 3axb_A 183 VVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSNRLLNPL 261 (448)
T ss_dssp HHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHHHHHGGG
T ss_pred HHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHHHHHHHc
Confidence 4455555543 247899999999987 55555 5777777 68 99999999999986 55544
No 94
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=94.45 E-value=0.055 Score=54.29 Aligned_cols=44 Identities=16% Similarity=0.152 Sum_probs=38.5
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcC---Cc---EEEecEEEEecCCCCccc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLEN---GQ---CYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~d---G~---~~~adlvVGADG~~S~vR 58 (475)
.++++++|++++.++++++|++.+ |+ ++++|.||.|+|.+|.-+
T Consensus 131 ~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~ 180 (447)
T 2gv8_A 131 FIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPY 180 (447)
T ss_dssp GEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBC
T ss_pred eEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEEEeCEEEECCCCCCCCC
Confidence 588999999999888888888876 76 799999999999988654
No 95
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=94.38 E-value=0.067 Score=51.71 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=45.1
Q ss_pred HHHHhhccCC--CeEEcCcEEEEEEeeCC-eEEEEEcCCcEEEecEEEEecCCCCcccccc
Q 011888 4 QQILAKAVGD--EIILNESNVIDFKDHGD-KVSVVLENGQCYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 4 ~~~L~~~~~~--~~i~~~~~v~~v~~~~~-~v~v~~~dG~~~~adlvVGADG~~S~vR~~l 61 (475)
.+.|.+.+.. ..++++++|++++.+++ .++|++.+|+++++|.||.|+|.+|..++.+
T Consensus 77 ~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~ 137 (360)
T 3ab1_A 77 VESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKL 137 (360)
T ss_dssp HHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCC
T ss_pred HHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCC
Confidence 3344444432 36888999999998765 6889898998999999999999998776655
No 96
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=93.80 E-value=0.18 Score=52.17 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=43.5
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCeEE-EEEcC---C--cEEEecEEEEecCCCC-cccccc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLEN---G--QCYAGDLLIGADGIWS-KVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~-v~~~d---G--~~~~adlvVGADG~~S-~vR~~l 61 (475)
|...|.+.+. ...++++++|+++..+++++. |++.| | .+++|+.||.|+|.+| .+++.+
T Consensus 172 l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~ 239 (561)
T 3da1_A 172 LTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKD 239 (561)
T ss_dssp HHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTT
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhc
Confidence 3344444432 347899999999999888753 66654 4 3799999999999999 677765
No 97
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=93.75 E-value=0.015 Score=57.60 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=39.7
Q ss_pred HHHHHhhccCC--CeEEcCcEEE---------EEEeeCCeEEEEEcCCcEEEecEEEEecCCCC-cccc-cc
Q 011888 3 LQQILAKAVGD--EIILNESNVI---------DFKDHGDKVSVVLENGQCYAGDLLIGADGIWS-KVRK-NL 61 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~---------~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S-~vR~-~l 61 (475)
|.+.|.+.+.. ..++++++|+ +++.+++++.|++.+| +++||.||.|+|.+| .+++ .+
T Consensus 174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s~~l~~~~~ 244 (405)
T 3c4n_A 174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAGPALVEQGL 244 (405)
T ss_dssp HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccHHHHHHHhc
Confidence 55566665543 3788999999 8887777777766666 899999999999999 6777 55
No 98
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=93.63 E-value=0.11 Score=49.56 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=41.4
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l 61 (475)
..++++++|++++.+++.++|++.+|+++++|.||.|+|.+|...+..
T Consensus 80 ~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~ 127 (335)
T 2zbw_A 80 PVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRI 127 (335)
T ss_dssp CEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCC
T ss_pred CEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCC
Confidence 367889999999988778889888888999999999999998766654
No 99
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=93.39 E-value=0.066 Score=52.93 Aligned_cols=53 Identities=19% Similarity=0.153 Sum_probs=41.7
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEee----CCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDH----GDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~----~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
+.+.|.+.+. ..+++++++|+++..+ ++++.|++.+| +++||.||.|+|.+|.
T Consensus 111 l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s~ 169 (401)
T 2gqf_A 111 IVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGGLSM 169 (401)
T ss_dssp HHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCCSSC
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEECCCCccC
Confidence 4455555543 2479999999999876 56688888776 7999999999999994
No 100
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=93.37 E-value=0.065 Score=51.99 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=41.8
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
+.+.|.+.+. ...++.+++|++++.+++++.|++.+| +++||.||.|.|.+|.
T Consensus 151 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~ 205 (372)
T 2uzz_A 151 AIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWVK 205 (372)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGGG
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccHH
Confidence 3445555543 247889999999998887888888777 4999999999999874
No 101
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=93.02 E-value=0.16 Score=52.36 Aligned_cols=44 Identities=20% Similarity=0.064 Sum_probs=38.5
Q ss_pred eEEcCcEEEEEEeeCC--eEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 15 IILNESNVIDFKDHGD--KVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~--~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
.++++++|++++.+++ .++|++++|++++||+||.|+|..|.-+
T Consensus 112 ~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~ 157 (542)
T 1w4x_A 112 GITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQ 157 (542)
T ss_dssp GEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCC
T ss_pred eEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCC
Confidence 5899999999987654 6889999999999999999999998655
No 102
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=92.98 E-value=0.18 Score=51.91 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=39.1
Q ss_pred eEEcCcEEEEEEeeCC--eEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 15 IILNESNVIDFKDHGD--KVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~--~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
.++++++|++++.+++ .++|++++|++++||.||.|+|..|.-+
T Consensus 105 ~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~ 150 (540)
T 3gwf_A 105 HFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAIN 150 (540)
T ss_dssp GEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBC
T ss_pred eeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCC
Confidence 6899999999998765 7899999999999999999999988655
No 103
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=92.88 E-value=0.1 Score=49.92 Aligned_cols=42 Identities=19% Similarity=0.410 Sum_probs=37.8
Q ss_pred eEEcCcEEEEEEeeCCeEE-EEEcCCcEEEecEEEEecCCCCcc
Q 011888 15 IILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~-v~~~dG~~~~adlvVGADG~~S~v 57 (475)
.++++++|++++.+++.+. |++.+| ++++|.||.|+|.+|.-
T Consensus 92 ~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~ 134 (357)
T 4a9w_A 92 PVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEA 134 (357)
T ss_dssp CEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGB
T ss_pred EEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCC
Confidence 5889999999999999888 888887 89999999999998854
No 104
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=92.76 E-value=0.11 Score=53.74 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=44.6
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeC-CeEE-EEE--cCCc--EEEecEEEEecCCCCcccccc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHG-DKVS-VVL--ENGQ--CYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~-~~v~-v~~--~dG~--~~~adlvVGADG~~S~vR~~l 61 (475)
|.+.|.+.+. ...|+++++|+++..++ +.|. |.+ .+|+ +++|+.||.|+|..|..|+++
T Consensus 252 l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~~~~~~ 318 (566)
T 1qo8_A 252 IIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMI 318 (566)
T ss_dssp HHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTCHHHH
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcccCHHHH
Confidence 4566666553 24799999999998877 6443 444 4775 689999999999999987766
No 105
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=92.72 E-value=1.1 Score=45.13 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=43.1
Q ss_pred hHHHHHhhccCCCeEEcCcEEEEEEeeCCe------EEEEEc--CC---cEEEecEEEEecCCCCcc
Q 011888 2 TLQQILAKAVGDEIILNESNVIDFKDHGDK------VSVVLE--NG---QCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~~------v~v~~~--dG---~~~~adlvVGADG~~S~v 57 (475)
.|-+.|.+.++...|+++++|++|+.++++ +.|++. +| ++++||.||.|-..+-..
T Consensus 244 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~ 310 (504)
T 1sez_A 244 TLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVK 310 (504)
T ss_dssp HHHHHHHTTSCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHH
T ss_pred HHHHHHHhhcccceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECCEEEECCCHHHHH
Confidence 355667777765679999999999988777 777775 45 578999999998876444
No 106
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=92.66 E-value=0.14 Score=50.16 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=44.5
Q ss_pred HHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 4 QQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 4 ~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
.+.|.+.+.. ..++++++|++++.+++++.|++++|+++.+|+||.|.|..+...
T Consensus 190 ~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~ 246 (384)
T 2v3a_A 190 AKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTE 246 (384)
T ss_dssp HHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCH
T ss_pred HHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCHH
Confidence 3445554432 378999999999988888899999999999999999999887654
No 107
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=92.44 E-value=0.16 Score=47.67 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=37.4
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRK 59 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~ 59 (475)
.+++ ++|++++.+++.++|++.+|+++++|.||.|+|.+|.+..
T Consensus 75 ~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~ 118 (311)
T 2q0l_A 75 KHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTG 118 (311)
T ss_dssp EEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCC
T ss_pred EEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCC
Confidence 5666 7899999888888888889999999999999998776543
No 108
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=92.30 E-value=0.18 Score=48.41 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=41.2
Q ss_pred HHHHHhhccCC---CeEEcCcEEEEEEeeCC----------------------eEEEEEc------------CCcEEEec
Q 011888 3 LQQILAKAVGD---EIILNESNVIDFKDHGD----------------------KVSVVLE------------NGQCYAGD 45 (475)
Q Consensus 3 L~~~L~~~~~~---~~i~~~~~v~~v~~~~~----------------------~v~v~~~------------dG~~~~ad 45 (475)
+.+.|.+.+.. ..++++++++++..+++ +|.+... ++.+++|+
T Consensus 162 ~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak 241 (344)
T 3jsk_A 162 FTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAP 241 (344)
T ss_dssp HHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECS
T ss_pred HHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEEcC
Confidence 44566665433 37899999999986652 2333221 23479999
Q ss_pred EEEEecCCCCcccccc
Q 011888 46 LLIGADGIWSKVRKNL 61 (475)
Q Consensus 46 lvVGADG~~S~vR~~l 61 (475)
+||.|+|..|++++.+
T Consensus 242 ~VV~ATG~~s~v~~~~ 257 (344)
T 3jsk_A 242 VIISTTGHDGPFGAFS 257 (344)
T ss_dssp EEEECCCSSSSSSCHH
T ss_pred EEEECCCCCchhhHHH
Confidence 9999999999988776
No 109
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=92.12 E-value=0.19 Score=48.12 Aligned_cols=50 Identities=16% Similarity=0.097 Sum_probs=40.9
Q ss_pred HHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCC
Q 011888 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI 53 (475)
Q Consensus 3 L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~ 53 (475)
|.+.|.+.+ ...|+++++|++|+.++++++|++.+|+++++|.||.|=..
T Consensus 114 l~~~l~~~~-g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~ 163 (342)
T 3qj4_A 114 IIKHYLKES-GAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPV 163 (342)
T ss_dssp HHHHHHHHH-TCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCH
T ss_pred HHHHHHHhc-CCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCH
Confidence 444555544 35799999999999988899999999988999999999653
No 110
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=92.08 E-value=0.25 Score=49.73 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=44.9
Q ss_pred hHHHHHhhccC----------CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 2 TLQQILAKAVG----------DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 2 ~L~~~L~~~~~----------~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
.|-+.|.+.+. ...|+++++|++|+.++++|+|++.+|++++||.||.|.+....
T Consensus 207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l 271 (472)
T 1b37_A 207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVL 271 (472)
T ss_dssp HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHH
T ss_pred HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHHHh
Confidence 34556666653 23699999999999988899999999999999999999997543
No 111
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=91.47 E-value=0.25 Score=50.36 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=44.4
Q ss_pred HHHHHhhccCCCeEEcCcEEEEEEee-CCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVGDEIILNESNVIDFKDH-GDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~~~~i~~~~~v~~v~~~-~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
|-+.|.+.++...|+++++|++|..+ +++|+|++.+|++++||.||.|-+....
T Consensus 204 l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~~l 258 (516)
T 1rsg_A 204 VVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVL 258 (516)
T ss_dssp HHHHHHTTSCGGGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHHHH
T ss_pred HHHHHHHhCCCCEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHHHh
Confidence 45566666665579999999999986 6779999999999999999999986543
No 112
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=91.38 E-value=0.18 Score=52.18 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=43.2
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeC-CeEE-EEEc--CCc--EEEecEEEEecCCCCcccccc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHG-DKVS-VVLE--NGQ--CYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~-~~v~-v~~~--dG~--~~~adlvVGADG~~S~vR~~l 61 (475)
|.+.|.+.+. ...|+++++|+++..++ +.|. |.+. +|+ +++||.||.|+|..|..++.+
T Consensus 257 l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~n~~~~ 323 (571)
T 1y0p_A 257 VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERV 323 (571)
T ss_dssp HHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHH
T ss_pred HHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcccCHHHH
Confidence 4556666553 24799999999998876 5433 4433 675 689999999999999876544
No 113
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=91.37 E-value=0.16 Score=51.04 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=44.0
Q ss_pred HHHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 4 QQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 4 ~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
.+.|.+.+. ...++++++|++++.+++++.+++++|+++.+|+||.|.|..+.+.
T Consensus 211 ~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~ 267 (455)
T 2yqu_A 211 SRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTE 267 (455)
T ss_dssp HHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCT
T ss_pred HHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCC
Confidence 334444433 2479999999999988888889888899999999999999987653
No 114
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=91.01 E-value=0.31 Score=49.18 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=44.9
Q ss_pred hHHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCC---cEEEecEEEEecCCC
Q 011888 2 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG---QCYAGDLLIGADGIW 54 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG---~~~~adlvVGADG~~ 54 (475)
.|-+.|.+.++...|+++++|++|+.++++|+|++.+| ++++||.||.|-+.+
T Consensus 240 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~ 295 (489)
T 2jae_A 240 RIYYAFQDRIGTDNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPH 295 (489)
T ss_dssp HHHHHHHHHHCGGGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHH
T ss_pred HHHHHHHHhcCCCeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHH
Confidence 45667777776556999999999999999999999887 689999999998875
No 115
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=90.86 E-value=0.34 Score=49.89 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=38.4
Q ss_pred eEEcCcEEEEEEeeCC--eEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 15 IILNESNVIDFKDHGD--KVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~--~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
.++++++|++++.+++ .++|++.+|++++||+||.|.|..|.-+
T Consensus 117 ~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~ 162 (549)
T 4ap3_A 117 DIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNAN 162 (549)
T ss_dssp GEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECC
T ss_pred cEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCC
Confidence 6899999999987765 7889999999999999999999877544
No 116
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=90.40 E-value=0.33 Score=50.79 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=43.9
Q ss_pred HHHHHhhccCC--C-eEEcCcEEEEEEeeCCeE-EEEEcCCcEEEecEEEEecCCCCcccccc
Q 011888 3 LQQILAKAVGD--E-IILNESNVIDFKDHGDKV-SVVLENGQCYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~~--~-~i~~~~~v~~v~~~~~~v-~v~~~dG~~~~adlvVGADG~~S~vR~~l 61 (475)
+.+.|.+.+.. + .+ ++++|+++..+++.| .|.+.+|.+++|+.||.|+|.+|..+...
T Consensus 126 ~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~~~i~ 187 (651)
T 3ces_A 126 YRQAVRTALENQPNLMI-FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHI 187 (651)
T ss_dssp HHHHHHHHHHTCTTEEE-EECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCCEEEC
T ss_pred HHHHHHHHHHhCCCCEE-EEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccCcccc
Confidence 44555555433 2 55 567999998877765 57888898999999999999999887653
No 117
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=89.96 E-value=0.38 Score=47.59 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=36.9
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCC
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW 54 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~ 54 (475)
.|+++++|++|+.++++|+|++++|++++||.||.|=|..
T Consensus 219 ~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~ 258 (431)
T 3k7m_X 219 EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMN 258 (431)
T ss_dssp CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGG
T ss_pred ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcc
Confidence 7999999999999888999999999889999999999954
No 118
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=89.62 E-value=0.48 Score=49.45 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=42.3
Q ss_pred HHHHHhhccCC---CeEEcCcEEEEEEeeCCeEE-EEEcCCcEEEecEEEEecCCCCcccc
Q 011888 3 LQQILAKAVGD---EIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSKVRK 59 (475)
Q Consensus 3 L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~-v~~~dG~~~~adlvVGADG~~S~vR~ 59 (475)
+.+.|.+.+.. ..+ +..+|+++..+++.|. |.+.+|++++|+.||.|+|.+|..+-
T Consensus 119 l~~~L~~~l~~~~GV~I-~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~~~i 178 (641)
T 3cp8_A 119 YSLYMRRIVEHEPNIDL-LQDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLI 178 (641)
T ss_dssp HHHHHHHHHHTCTTEEE-EECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBTCEE
T ss_pred HHHHHHHHHHhCCCCEE-EeeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCCccc
Confidence 34555555432 255 4568999988888877 88889999999999999999987553
No 119
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=89.56 E-value=0.17 Score=48.12 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=35.5
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
..++.++ |++++.+++.++|++ +|+++++|.||.|+|.+|..-
T Consensus 85 v~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~ 127 (333)
T 1vdc_A 85 TTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRL 127 (333)
T ss_dssp CEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCC
T ss_pred CEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCC
Confidence 3677776 999988777788877 788999999999999987543
No 120
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=89.53 E-value=0.49 Score=48.66 Aligned_cols=44 Identities=23% Similarity=0.158 Sum_probs=36.9
Q ss_pred eEEcCcEEEEEEeeC--CeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 15 IILNESNVIDFKDHG--DKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~--~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
.++++++|++++.++ ..++|++++|++++||+||.|.|..|.-+
T Consensus 105 ~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~ 150 (545)
T 3uox_A 105 HYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASR 150 (545)
T ss_dssp GEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC--
T ss_pred cEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCc
Confidence 588999999998765 47889999999999999999999887554
No 121
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=89.50 E-value=0.64 Score=48.43 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=45.3
Q ss_pred hHHHHHhhccCC---CeEEcCcEEEEEEeeCCeE---EEE-EcCCc--EEEecEEEEecCCCCcccccc
Q 011888 2 TLQQILAKAVGD---EIILNESNVIDFKDHGDKV---SVV-LENGQ--CYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 2 ~L~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v---~v~-~~dG~--~~~adlvVGADG~~S~vR~~l 61 (475)
.|.+.|.+.+.. ..++++++|+++..+++.| .+. +.+|+ +++|+.||.|+|..|.++...
T Consensus 135 ~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~~~~ 203 (602)
T 1kf6_A 135 HMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYN 203 (602)
T ss_dssp HHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSB
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcccccCc
Confidence 356677776543 3688999999999877743 332 25776 799999999999999998665
No 122
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=88.88 E-value=0.66 Score=42.88 Aligned_cols=56 Identities=20% Similarity=0.168 Sum_probs=41.9
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
+...|.+.+.. ...+...+|++++.++++++|++.+|+++++|.||.|.|..+...
T Consensus 58 ~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~ 115 (297)
T 3fbs_A 58 IIAEARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELP 115 (297)
T ss_dssp HHHHHHHHHTTCTTEEEEESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECC
T ss_pred HHHHHHHHHHhcCCeEEEEeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCC
Confidence 34444454443 222335699999998888999999999999999999999976544
No 123
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=88.68 E-value=0.46 Score=44.48 Aligned_cols=43 Identities=9% Similarity=0.078 Sum_probs=36.0
Q ss_pred eEEcCcEEEEEEeeC---CeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 15 IILNESNVIDFKDHG---DKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~---~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
.++.+++|+.++.+. +.++|++++|+++++|.||.|+|.++..
T Consensus 72 ~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~ 117 (310)
T 1fl2_A 72 DVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN 117 (310)
T ss_dssp EEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred eEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence 688899999997653 3678888899899999999999987643
No 124
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=88.49 E-value=0.5 Score=48.15 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=43.5
Q ss_pred HHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
|-+.|.+.++ ..|+++++|++|+.++++|+|++.+|++++||.||.|-+.+..
T Consensus 217 l~~~l~~~lg-~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 269 (520)
T 1s3e_A 217 VSERIMDLLG-DRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLG 269 (520)
T ss_dssp HHHHHHHHHG-GGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGG
T ss_pred HHHHHHHHcC-CcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHHH
Confidence 3344555443 3699999999999888889999999999999999999998864
No 125
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=88.25 E-value=0.33 Score=48.55 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=38.5
Q ss_pred CeEEcCcEEEEEEeeCCe-EEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~-v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
..++++++|++++.++++ +.|++.+|+++.+|+||.|.|..+.+.
T Consensus 223 v~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~ 268 (450)
T 1ges_A 223 PQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAND 268 (450)
T ss_dssp CEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCT
T ss_pred CEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCC
Confidence 478999999999876554 788899999999999999999877654
No 126
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=88.12 E-value=0.49 Score=47.54 Aligned_cols=44 Identities=18% Similarity=0.065 Sum_probs=38.9
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCc-EEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQ-CYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~-~~~adlvVGADG~~S~v 57 (475)
..++.+++|++++.+++++.|++.+|+ ++.+|+||.|.|..+.+
T Consensus 222 v~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 266 (463)
T 2r9z_A 222 IETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT 266 (463)
T ss_dssp CEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESC
T ss_pred CEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCC
Confidence 479999999999988778889999999 89999999999987654
No 127
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=88.05 E-value=0.51 Score=47.37 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=43.0
Q ss_pred HHHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEc-C--Cc--EEEecEEEEecCCCCccc
Q 011888 4 QQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLE-N--GQ--CYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 4 ~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~-d--G~--~~~adlvVGADG~~S~vR 58 (475)
.+.|.+.+. ...++++++|++++.+++++.|++. + |+ ++.+|+||.|.|..+.+.
T Consensus 213 ~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~ 274 (464)
T 2eq6_A 213 AALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTE 274 (464)
T ss_dssp HHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCT
T ss_pred HHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCC
Confidence 334444443 2479999999999988888888887 7 87 899999999999887664
No 128
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=87.95 E-value=0.55 Score=48.63 Aligned_cols=59 Identities=22% Similarity=0.175 Sum_probs=42.4
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeC-Ce---EEEEEcCCc--EEEecEEEEecCCCCcccccc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHG-DK---VSVVLENGQ--CYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~-~~---v~v~~~dG~--~~~adlvVGADG~~S~vR~~l 61 (475)
|.+.|.+.+. ..+++++++|+++..++ +. |.+...+|+ +++|+.||.|.|..|..++.+
T Consensus 257 l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~ 323 (572)
T 1d4d_A 257 VAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERV 323 (572)
T ss_dssp HHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHH
T ss_pred HHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCccCHHHH
Confidence 4556666554 24799999999998765 54 333333675 689999999999999876655
No 129
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=87.46 E-value=0.39 Score=48.57 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=40.0
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
..++.+++|++++.+++++.|++++|+++.+|+||-|-|..+...
T Consensus 247 v~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~ 291 (484)
T 3o0h_A 247 ISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTT 291 (484)
T ss_dssp CEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCT
T ss_pred CEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCC
Confidence 478999999999988888999999999999999999999876654
No 130
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=87.43 E-value=0.7 Score=48.13 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=43.1
Q ss_pred HHHHHhhccCC--C-eEEcCcEEEEEEeeCCeE-EEEEcCCcEEEecEEEEecCCCCccccc
Q 011888 3 LQQILAKAVGD--E-IILNESNVIDFKDHGDKV-SVVLENGQCYAGDLLIGADGIWSKVRKN 60 (475)
Q Consensus 3 L~~~L~~~~~~--~-~i~~~~~v~~v~~~~~~v-~v~~~dG~~~~adlvVGADG~~S~vR~~ 60 (475)
+.+.|.+.+.. + .+ ++++|+++..+++.| .|.+.+|++++|+.||.|+|.+|..+..
T Consensus 125 ~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~~~~ 185 (637)
T 2zxi_A 125 YREYMKKVCENQENLYI-KQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIY 185 (637)
T ss_dssp HHHHHHHHHHTCTTEEE-EESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTCEEE
T ss_pred HHHHHHHHHHhCCCCEE-EEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccCcee
Confidence 34455555432 2 55 568999998877766 4888899999999999999999887754
No 131
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=86.08 E-value=1.3 Score=41.61 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=41.9
Q ss_pred HHHHhhccCC--CeEEcCcEEEEEEeeCC-eEEEEEcCCcEEEecEEEEecCCCCcccc
Q 011888 4 QQILAKAVGD--EIILNESNVIDFKDHGD-KVSVVLENGQCYAGDLLIGADGIWSKVRK 59 (475)
Q Consensus 4 ~~~L~~~~~~--~~i~~~~~v~~v~~~~~-~v~v~~~dG~~~~adlvVGADG~~S~vR~ 59 (475)
...|.+.+.. ..++++++|++++.+++ .+.|++.+|+ +.+|.||.|.|.+|....
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~ 127 (332)
T 3lzw_A 70 INNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPR 127 (332)
T ss_dssp HHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEEC
T ss_pred HHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCC
Confidence 3444444443 36888999999998776 7888888886 999999999999764433
No 132
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=85.83 E-value=1.1 Score=44.97 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=36.2
Q ss_pred EEcCcEEEEEEeeCC--eEEEEEcC---C--cEEEecEEEEecCCCCcccc
Q 011888 16 ILNESNVIDFKDHGD--KVSVVLEN---G--QCYAGDLLIGADGIWSKVRK 59 (475)
Q Consensus 16 i~~~~~v~~v~~~~~--~v~v~~~d---G--~~~~adlvVGADG~~S~vR~ 59 (475)
++++++|++++.+++ .++|++.+ | .++.+|.||.|.|.+|.-+.
T Consensus 120 i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s~p~~ 170 (464)
T 2xve_A 120 IRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYV 170 (464)
T ss_dssp EECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECCCSSSSBCC
T ss_pred EEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECCCCCCCCcc
Confidence 889999999998766 67777765 4 57899999999998877664
No 133
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=85.53 E-value=0.99 Score=48.95 Aligned_cols=54 Identities=20% Similarity=0.415 Sum_probs=42.2
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCeE-EEEEcCCcEEEecEEEEecCCCCcc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDKV-SVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v-~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
+.+.|.+.+.. ..++.+++|++++.+++++ .|.+.+| +++||.||.|.|.+|..
T Consensus 153 l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~~ 209 (830)
T 1pj5_A 153 AVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAK 209 (830)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHH
T ss_pred HHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccchHH
Confidence 44556655532 4788999999999888876 4777676 79999999999999954
No 134
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=85.50 E-value=1.1 Score=42.21 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=33.4
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
.+++ .+|++++.+++.++|+. +|.++++|.||.|+|.++..
T Consensus 88 ~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~ 128 (319)
T 3cty_A 88 IREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKH 128 (319)
T ss_dssp EEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECC
T ss_pred EEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCccc
Confidence 5666 78999998888777776 66789999999999986643
No 135
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=85.31 E-value=1 Score=45.55 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=38.4
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
..++++++|++++.+++.+.|++.+|+++.+|+||-|-|.....
T Consensus 241 V~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~ 284 (493)
T 1m6i_A 241 VKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNV 284 (493)
T ss_dssp CEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECC
T ss_pred CEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccH
Confidence 37899999999988777888999999999999999999976543
No 136
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=84.91 E-value=1.3 Score=44.61 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=42.3
Q ss_pred hHHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCc----EEEecEEEEecCCC
Q 011888 2 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQ----CYAGDLLIGADGIW 54 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~----~~~adlvVGADG~~ 54 (475)
.|-+.|.+.++. .|+++++|++|+.++++|+|++.+|+ +++||.||-|=+..
T Consensus 242 ~l~~~l~~~l~~-~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~ 297 (498)
T 2iid_A 242 KLPTAMYRDIQD-KVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSR 297 (498)
T ss_dssp HHHHHHHHHTGG-GEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHH
T ss_pred HHHHHHHHhccc-ccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChH
Confidence 355566666655 69999999999998889999988775 58999999998865
No 137
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=84.29 E-value=0.83 Score=46.29 Aligned_cols=53 Identities=13% Similarity=0.230 Sum_probs=42.4
Q ss_pred HHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 5 QILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 5 ~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
+.|.+.+. ...++.+++|++++.+++++.|++.+|+++.+|.||-|-|..+..
T Consensus 227 ~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~ 281 (499)
T 1xdi_A 227 LVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT 281 (499)
T ss_dssp HHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence 34444433 247999999999998777788888899999999999999987655
No 138
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=83.83 E-value=1.2 Score=47.92 Aligned_cols=40 Identities=23% Similarity=0.207 Sum_probs=36.6
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCC
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW 54 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~ 54 (475)
.|+++++|++|+.++++|+|++.+|++++||.||.|=...
T Consensus 545 ~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~~ 584 (776)
T 4gut_A 545 DIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLA 584 (776)
T ss_dssp CEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCHH
T ss_pred cEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCHH
Confidence 6999999999999888999999999999999999998653
No 139
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=83.21 E-value=0.96 Score=45.39 Aligned_cols=53 Identities=23% Similarity=0.391 Sum_probs=42.1
Q ss_pred HHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 5 QILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 5 ~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
+.|.+.+. ...++.+++|++++.+++++++.+.+|+++.+|.||-|=|.....
T Consensus 206 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~ 260 (472)
T 3iwa_A 206 QMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNT 260 (472)
T ss_dssp HHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEECC
T ss_pred HHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCH
Confidence 34444433 247899999999998777888999999999999999999986543
No 140
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=82.91 E-value=1.7 Score=45.78 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=34.4
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcC------CcEEEecEEEEecCC
Q 011888 15 IILNESNVIDFKDHGDKVSVVLEN------GQCYAGDLLIGADGI 53 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~d------G~~~~adlvVGADG~ 53 (475)
.|+++++|++|+.++++|+|++.+ |++++||.||.|=..
T Consensus 412 ~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~ 456 (662)
T 2z3y_A 412 DIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPL 456 (662)
T ss_dssp EEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCH
T ss_pred ceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCCH
Confidence 699999999999999999999877 568999999998653
No 141
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=82.56 E-value=1.3 Score=43.52 Aligned_cols=44 Identities=25% Similarity=0.395 Sum_probs=37.4
Q ss_pred CeEEcCcEEEEEEeeCCeE-EEEEcCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKV-SVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v-~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
..++++++|++++.+++++ .|+++||+++.||+||-|=|.....
T Consensus 199 V~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~ 243 (404)
T 3fg2_P 199 IRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNV 243 (404)
T ss_dssp CEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECC
T ss_pred cEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCH
Confidence 4789999999999877766 4889999999999999999976543
No 142
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=82.42 E-value=0.91 Score=42.79 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=33.1
Q ss_pred eEEcCcEEEEEEee--CCe-EEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 15 IILNESNVIDFKDH--GDK-VSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 15 ~i~~~~~v~~v~~~--~~~-v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
.+++ .+|++++.+ ++. ++|.+.+|+++++|.||.|+|.++..
T Consensus 81 ~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~ 125 (325)
T 2q7v_A 81 KVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRK 125 (325)
T ss_dssp EEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred EEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence 5666 589999876 443 67778889999999999999987543
No 143
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=81.78 E-value=1.4 Score=44.91 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=39.7
Q ss_pred HHHHhhccCC--CeEEcCcEEEEEEee---CCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 4 QQILAKAVGD--EIILNESNVIDFKDH---GDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 4 ~~~L~~~~~~--~~i~~~~~v~~v~~~---~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
...|.+.+.. ..++.+++|++++.+ ++.++|++.+|+++++|.||.|.|.++.
T Consensus 270 ~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~ 327 (521)
T 1hyu_A 270 AGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWR 327 (521)
T ss_dssp HHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 3444444432 368889999999754 2368888999999999999999998654
No 144
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=81.59 E-value=1.2 Score=41.76 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=34.5
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
..++.++ +++++.+++.+++ +.+|+++++|.||.|+|.++..
T Consensus 77 ~~~~~~~-v~~i~~~~~~~~v-~~~~~~~~~~~lv~AtG~~~~~ 118 (320)
T 1trb_A 77 TEIIFDH-INKVDLQNRPFRL-NGDNGEYTCDALIIATGASARY 118 (320)
T ss_dssp CEEECCC-EEEEECSSSSEEE-EESSCEEEEEEEEECCCEEECC
T ss_pred CEEEEee-eeEEEecCCEEEE-EeCCCEEEcCEEEECCCCCcCC
Confidence 3577776 8999887777887 6788899999999999987644
No 145
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=81.48 E-value=1 Score=42.76 Aligned_cols=42 Identities=19% Similarity=0.082 Sum_probs=33.5
Q ss_pred CeEEcCcEEEEEEeeCCeEEE-EEcCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSV-VLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v-~~~dG~~~~adlvVGADG~~S~v 57 (475)
..+++++ +++++. .+.++| .+.+|+++++|.||.|+|.++..
T Consensus 86 v~~~~~~-v~~i~~-~~~~~v~~~~~g~~~~~d~lviAtG~~~~~ 128 (335)
T 2a87_A 86 ADLRMED-VESVSL-HGPLKSVVTADGQTHRARAVILAMGAAARY 128 (335)
T ss_dssp CEEECCC-EEEEEC-SSSSEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred CEEEEee-EEEEEe-CCcEEEEEeCCCCEEEeCEEEECCCCCccC
Confidence 3677776 888887 555667 77888899999999999997643
No 146
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=81.45 E-value=1 Score=45.15 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=41.3
Q ss_pred HHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEE---cCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVL---ENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~---~dG~~~~adlvVGADG~~S~ 56 (475)
|-+.|.+.++ ..|+++++|++|+.+++++.|++ .+|++++||.||-|=+....
T Consensus 240 l~~~l~~~lg-~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~~ 295 (478)
T 2ivd_A 240 LIDALAASLG-DAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHAT 295 (478)
T ss_dssp HHHHHHHHHG-GGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHH
T ss_pred HHHHHHHHhh-hhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHHHH
Confidence 4455666553 36999999999998888888988 78888999999999987754
No 147
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=81.37 E-value=1.1 Score=45.76 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=41.9
Q ss_pred HHHhhccC--CCeEEcCcEEEEEEeeCCe----EEEEEcCCc-EEEecEEEEecCCCCccc
Q 011888 5 QILAKAVG--DEIILNESNVIDFKDHGDK----VSVVLENGQ-CYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 5 ~~L~~~~~--~~~i~~~~~v~~v~~~~~~----v~v~~~dG~-~~~adlvVGADG~~S~vR 58 (475)
+.|.+.+. ...++.+++|++++.++++ +.|++.+|+ ++.+|.||-|-|..+..-
T Consensus 259 ~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~ 319 (523)
T 1mo9_A 259 AYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSA 319 (523)
T ss_dssp HHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCH
T ss_pred HHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCc
Confidence 34444443 2479999999999876555 788888887 899999999999877653
No 148
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=80.91 E-value=1.5 Score=43.00 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=37.7
Q ss_pred CeEEcCcEEEEEEeeCCeE-EEEEcCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKV-SVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v-~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
..++++++|++++.+++++ .|+++||+++.||+||-|=|.....
T Consensus 209 V~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~ 253 (415)
T 3lxd_A 209 VDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCV 253 (415)
T ss_dssp CEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESC
T ss_pred CEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccCh
Confidence 4789999999999876666 6889999999999999999976554
No 149
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=80.89 E-value=1.4 Score=44.62 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=40.9
Q ss_pred HHHhhccC--CCeEEcCcEEEEEEeeCC-eEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 5 QILAKAVG--DEIILNESNVIDFKDHGD-KVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 5 ~~L~~~~~--~~~i~~~~~v~~v~~~~~-~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
+.|.+.+. ...++++++|++++.+++ .+.|++++|+++.+|+||-|-|.....
T Consensus 235 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~ 290 (490)
T 1fec_A 235 KQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS 290 (490)
T ss_dssp HHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence 34444443 237899999999987664 478889999999999999999987654
No 150
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=80.78 E-value=8.5 Score=39.55 Aligned_cols=48 Identities=23% Similarity=0.433 Sum_probs=36.7
Q ss_pred CeEEcCcEEEEEEeeCCeE-EEEEc---CCc--EEEecEEEEecCCCC-cccccc
Q 011888 14 EIILNESNVIDFKDHGDKV-SVVLE---NGQ--CYAGDLLIGADGIWS-KVRKNL 61 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v-~v~~~---dG~--~~~adlvVGADG~~S-~vR~~l 61 (475)
..++.+++|+++..++++| .|++. +|+ +++|+.||-|.|.+| .+++.+
T Consensus 203 a~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~~ 257 (571)
T 2rgh_A 203 AYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLN 257 (571)
T ss_dssp CEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTTC
T ss_pred CeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHhh
Confidence 4789999999999887764 35553 343 799999999999998 455543
No 151
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=80.65 E-value=1.3 Score=44.16 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=36.8
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEc---CCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLE---NGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~---dG~~~~adlvVGADG~~S~v 57 (475)
..++++++|++++.+++++.+++. +++++.+|+||.|-|....+
T Consensus 226 v~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~ 272 (455)
T 1ebd_A 226 VEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNT 272 (455)
T ss_dssp CEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESC
T ss_pred CEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCccc
Confidence 478999999999988878888776 45689999999999987654
No 152
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=80.38 E-value=1.5 Score=43.99 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=40.0
Q ss_pred HHHHhhcc-C--CCeEEcCcEEEEEEeeCCeEEEEEc--CC--cEEEecEEEEecCCCCcc
Q 011888 4 QQILAKAV-G--DEIILNESNVIDFKDHGDKVSVVLE--NG--QCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 4 ~~~L~~~~-~--~~~i~~~~~v~~v~~~~~~v~v~~~--dG--~~~~adlvVGADG~~S~v 57 (475)
.+.|.+.+ . ...++++++|++++.+++++.++++ +| +++.+|+||-|-|..+..
T Consensus 218 ~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~ 278 (468)
T 2qae_A 218 TNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFT 278 (468)
T ss_dssp HHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECC
T ss_pred HHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCC
Confidence 34444444 3 3479999999999987777888876 67 679999999999987655
No 153
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=80.21 E-value=1.7 Score=43.73 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=43.0
Q ss_pred HHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcC----CcEEEecEEEEecCCCCccc
Q 011888 4 QQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLEN----GQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 4 ~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~d----G~~~~adlvVGADG~~S~vR 58 (475)
.+.|.+.+.. ..++++++|++++.+++++.|++.+ |+++.+|+||-|-|....+-
T Consensus 229 ~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~ 289 (482)
T 1ojt_A 229 VKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGK 289 (482)
T ss_dssp HHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECGG
T ss_pred HHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCC
Confidence 3444444443 2689999999999888788888887 77899999999999876653
No 154
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=80.01 E-value=1.9 Score=41.28 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=36.0
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
..++++++|++++.++++++|+..+| ++.+|.||.|-|.++.
T Consensus 103 v~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~ 144 (369)
T 3d1c_A 103 LNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF 144 (369)
T ss_dssp CEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS
T ss_pred CeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc
Confidence 36889999999998777788888777 5899999999999864
No 155
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=79.99 E-value=1.5 Score=44.36 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=37.9
Q ss_pred CeEEcCcEEEEEEeeCC-eEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHGD-KVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~-~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
..++++++|++++.+++ .+.|++.+|+++.+|+||-|-|....+-
T Consensus 250 V~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~ 295 (495)
T 2wpf_A 250 IEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTN 295 (495)
T ss_dssp CEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCG
T ss_pred CEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCccccc
Confidence 47899999999987654 4788899999999999999999876543
No 156
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=79.86 E-value=3.1 Score=39.50 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=39.1
Q ss_pred HHHHHhhccC---CCeEEcCcEEEEEEeeC----C--e---EEEEEc------------CCcEEEe--------------
Q 011888 3 LQQILAKAVG---DEIILNESNVIDFKDHG----D--K---VSVVLE------------NGQCYAG-------------- 44 (475)
Q Consensus 3 L~~~L~~~~~---~~~i~~~~~v~~v~~~~----~--~---v~v~~~------------dG~~~~a-------------- 44 (475)
+...|.+.+. ...++.+++|+++..++ + . |.+... ++.++.|
T Consensus 148 ~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~ 227 (326)
T 2gjc_A 148 FISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQK 227 (326)
T ss_dssp HHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSSTT
T ss_pred HHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccccccccccc
Confidence 3455555543 23788999999998763 2 2 333221 3357899
Q ss_pred -cEEEEecCCCCcccccc
Q 011888 45 -DLLIGADGIWSKVRKNL 61 (475)
Q Consensus 45 -dlvVGADG~~S~vR~~l 61 (475)
++||.|+|..|++.+.+
T Consensus 228 ~~~VV~ATG~~~~~~~~~ 245 (326)
T 2gjc_A 228 HGVILSTTGHDGPFGAFC 245 (326)
T ss_dssp CCEEEECCCCC--CCSHH
T ss_pred CCEEEECcCCCchHHHHH
Confidence 99999999999999877
No 157
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=79.86 E-value=1.9 Score=42.72 Aligned_cols=55 Identities=13% Similarity=-0.019 Sum_probs=42.1
Q ss_pred HHHHHhhccCCCeEEcCcEEEEEEeeCCe-EEEEEcCCcEEEecEEEEecCCCCccccc
Q 011888 3 LQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVRKN 60 (475)
Q Consensus 3 L~~~L~~~~~~~~i~~~~~v~~v~~~~~~-v~v~~~dG~~~~adlvVGADG~~S~vR~~ 60 (475)
|-+.|.+.++ ..|+++++|++|+.++++ |+|+. +|++++||.||-|=+.. .+.+.
T Consensus 217 l~~~l~~~lg-~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~-~~~~l 272 (453)
T 2yg5_A 217 VSIRMAEALG-DDVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPN-LYSRI 272 (453)
T ss_dssp HHHHHHHHHG-GGEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGG-GGGGS
T ss_pred HHHHHHHhcC-CcEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHH-HHhcC
Confidence 3444555553 469999999999988888 88875 77889999999998876 34444
No 158
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=79.61 E-value=1.3 Score=44.56 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=37.2
Q ss_pred CeEEcCcEEEEEEeeCCe--EEEEEcCC-cEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDK--VSVVLENG-QCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~--v~v~~~dG-~~~~adlvVGADG~~S~v 57 (475)
..++++++|++++.++++ +.|++++| +++.+|+||-|-|....+
T Consensus 241 v~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 287 (479)
T 2hqm_A 241 INVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL 287 (479)
T ss_dssp CEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred eEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence 479999999999876555 78889999 789999999999987665
No 159
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=79.49 E-value=2.4 Score=45.89 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=37.2
Q ss_pred HHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcC------CcEEEecEEEEecC
Q 011888 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLEN------GQCYAGDLLIGADG 52 (475)
Q Consensus 3 L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~d------G~~~~adlvVGADG 52 (475)
|-+.|.+.+ .|+++++|+.|+.++++|+|++.+ |++++||.||.|=-
T Consensus 574 L~~aLa~~l---~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvP 626 (852)
T 2xag_A 574 VPVALAEGL---DIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLP 626 (852)
T ss_dssp HHHHHTTTC---CEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCC
T ss_pred HHHHHHhCC---CEEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCC
Confidence 334444433 599999999999999999999876 56899999998854
No 160
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=78.87 E-value=1.9 Score=43.37 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=40.2
Q ss_pred hHHHHHhhccC--CCeEEcCcEEEEEEe-eCCe-EEEEEcCCcEEEecEEEEecCCC
Q 011888 2 TLQQILAKAVG--DEIILNESNVIDFKD-HGDK-VSVVLENGQCYAGDLLIGADGIW 54 (475)
Q Consensus 2 ~L~~~L~~~~~--~~~i~~~~~v~~v~~-~~~~-v~v~~~dG~~~~adlvVGADG~~ 54 (475)
+|-+.|.+.+. ..+++.+++|++|.. ++++ +.|++.+|++++||.||.|.|..
T Consensus 257 ~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 257 GIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp HHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred HHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence 35556666544 347999999999987 4444 45888899999999999999876
No 161
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=78.38 E-value=2.4 Score=42.82 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=37.8
Q ss_pred CeEEcCcEEEEEEeeCC-eEEEEEcCCcE-EEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHGD-KVSVVLENGQC-YAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~-~v~v~~~dG~~-~~adlvVGADG~~S~vR 58 (475)
..++++++|++++.+++ .+.|++++|++ +.+|+||-|-|.....-
T Consensus 232 v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~ 278 (500)
T 1onf_A 232 INIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTE 278 (500)
T ss_dssp CEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTT
T ss_pred CEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCC
Confidence 47999999999987654 47888999988 99999999999877653
No 162
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=78.33 E-value=2.7 Score=41.80 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=33.5
Q ss_pred CeEEcCcEEEEEEee---CCe--EEEEEcCCc----EEEecEEEEecCCCC
Q 011888 14 EIILNESNVIDFKDH---GDK--VSVVLENGQ----CYAGDLLIGADGIWS 55 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~---~~~--v~v~~~dG~----~~~adlvVGADG~~S 55 (475)
..++++++|++++.+ ++. ++|++.+|+ ++++|.||.|.|...
T Consensus 142 ~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~p 192 (463)
T 3s5w_A 142 EQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGTP 192 (463)
T ss_dssp TTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCEE
T ss_pred CeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCCC
Confidence 368999999999876 332 477777775 899999999999743
No 163
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=77.56 E-value=2.7 Score=39.13 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=34.2
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
.++. ++|++++.+++.+.+++.+|+++++|.||.|.|....
T Consensus 86 ~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~ 126 (323)
T 3f8d_A 86 PVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRR 126 (323)
T ss_dssp CEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEEC
T ss_pred EEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCc
Confidence 5666 8999999888888999999899999999999998743
No 164
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=77.11 E-value=1.3 Score=43.49 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=37.4
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
..++++++|++++.++....|+++||+++.+|+||-|=|..+..
T Consensus 200 V~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~ 243 (410)
T 3ef6_A 200 VQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPAD 243 (410)
T ss_dssp CEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECC
T ss_pred CEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecH
Confidence 37899999999987665557889999999999999999987654
No 165
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=75.98 E-value=1.9 Score=42.69 Aligned_cols=44 Identities=27% Similarity=0.371 Sum_probs=36.4
Q ss_pred CeEEcCcEEEEEEe--eCCeE-EEEEcCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKD--HGDKV-SVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~--~~~~v-~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
..+++++++++++. +++++ .|++++|+++.+|+||.|-|..+..
T Consensus 206 V~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~ 252 (431)
T 1q1r_A 206 VDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNC 252 (431)
T ss_dssp CEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECC
T ss_pred eEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCc
Confidence 37899999999987 44555 6888999999999999999986543
No 166
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=75.71 E-value=2.1 Score=40.28 Aligned_cols=43 Identities=21% Similarity=0.179 Sum_probs=35.9
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEc---CCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLE---NGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~---dG~~~~adlvVGADG~~S~v 57 (475)
..+++++ |++++.+.+.+++++. ++.++++|.||.|.|..+..
T Consensus 99 v~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~ 144 (338)
T 3itj_A 99 TEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKR 144 (338)
T ss_dssp CEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECC
T ss_pred CEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCC
Confidence 3688888 9999988888888884 67789999999999996544
No 167
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=75.35 E-value=1.4 Score=44.40 Aligned_cols=58 Identities=24% Similarity=0.232 Sum_probs=41.1
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCeEE-EEEc-CCcEEEecEEEEecCCCCcccccc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLE-NGQCYAGDLLIGADGIWSKVRKNL 61 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~-v~~~-dG~~~~adlvVGADG~~S~vR~~l 61 (475)
|.+.|.+.+. ..+++.+++| ++..+++.+. +... ++.++++|.||.|+|..|.++...
T Consensus 121 l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~ 182 (472)
T 2e5v_A 121 IFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYS 182 (472)
T ss_dssp HHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSB
T ss_pred HHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCccc
Confidence 4556666553 2478999999 9987777652 3332 223578999999999999987653
No 168
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=74.96 E-value=3.4 Score=40.47 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=40.2
Q ss_pred HHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
|-+.|.+.+.. .++++++|++|+.++++|+|++.+|+ ++||.||-|=+..-.
T Consensus 208 l~~~l~~~l~~-~v~~~~~V~~i~~~~~~v~v~~~~g~-~~ad~Vv~a~~~~~~ 259 (424)
T 2b9w_A 208 MFEHLNATLEH-PAERNVDITRITREDGKVHIHTTDWD-RESDVLVLTVPLEKF 259 (424)
T ss_dssp HHHHHHHHSSS-CCBCSCCEEEEECCTTCEEEEESSCE-EEESEEEECSCHHHH
T ss_pred HHHHHHHhhcc-eEEcCCEEEEEEEECCEEEEEECCCe-EEcCEEEECCCHHHH
Confidence 34455555543 57899999999988888999888885 899999998887643
No 169
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=74.85 E-value=4.5 Score=40.17 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=40.6
Q ss_pred HHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 4 QQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 4 ~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
.+.|.+.+.. ..++.+++|++++.+++++.|++.+| ++.+|.||-|=|.....
T Consensus 192 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~~ 246 (452)
T 3oc4_A 192 VAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHPQL 246 (452)
T ss_dssp HHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBCCC
T ss_pred HHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCCCh
Confidence 3444454443 37899999999997777888888777 89999999999986543
No 170
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=74.84 E-value=2 Score=42.90 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=40.3
Q ss_pred HHHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEc---CC--cEEEecEEEEecCCCCcc
Q 011888 4 QQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLE---NG--QCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 4 ~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~---dG--~~~~adlvVGADG~~S~v 57 (475)
.+.|.+.+. ...++++++|++++.+++++.++++ +| +++.+|+||.|-|..+..
T Consensus 221 ~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~ 281 (470)
T 1dxl_A 221 RKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT 281 (470)
T ss_dssp HHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECC
T ss_pred HHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCC
Confidence 334444443 2369999999999877767777776 55 689999999999987654
No 171
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=74.18 E-value=2 Score=42.93 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=33.0
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCC--cEEEecEEEEecCCCCcccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENG--QCYAGDLLIGADGIWSKVRK 59 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG--~~~~adlvVGADG~~S~vR~ 59 (475)
..++.++.+. .+++.++|.+.+| +++++|.||.|+|++|.+..
T Consensus 106 v~~~~g~~~~---id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~ 150 (464)
T 2a8x_A 106 ITEIHGYGTF---ADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVP 150 (464)
T ss_dssp CEEECEEEEE---SSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCT
T ss_pred CEEEEeEEEE---ecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCC
Confidence 3577776543 4567888988888 68999999999999876543
No 172
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=73.39 E-value=1.7 Score=43.18 Aligned_cols=54 Identities=20% Similarity=0.104 Sum_probs=41.9
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
|-+.|.+.+. ..+++++++|++|..+++++.....+|++++||.||.|-|..+.
T Consensus 236 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~~ 291 (433)
T 1d5t_A 236 LPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPD 291 (433)
T ss_dssp HHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCGG
T ss_pred HHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCcc
Confidence 4455655443 34689999999999888887744468889999999999998864
No 173
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=73.36 E-value=2.6 Score=42.20 Aligned_cols=55 Identities=18% Similarity=0.168 Sum_probs=40.7
Q ss_pred HHHHhhccC--CCeEEcCcEEEEEEe--eCCeEEEEEc-----CCcEEEecEEEEecCCCCccc
Q 011888 4 QQILAKAVG--DEIILNESNVIDFKD--HGDKVSVVLE-----NGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 4 ~~~L~~~~~--~~~i~~~~~v~~v~~--~~~~v~v~~~-----dG~~~~adlvVGADG~~S~vR 58 (475)
.+.|.+.+. ...++++++|++++. +++.+.|+++ +++++.+|+||.|-|....+.
T Consensus 227 ~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~ 290 (478)
T 1v59_A 227 AKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA 290 (478)
T ss_dssp HHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCT
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCC
Confidence 334444443 247999999999987 5666778776 456899999999999876654
No 174
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=73.29 E-value=8.3 Score=40.13 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=41.5
Q ss_pred hHHHHHhhccCC--CeEEcCcEEEEEEeeCCeEE-EEE---cCCc--EEEecEEEEecCCCCcc
Q 011888 2 TLQQILAKAVGD--EIILNESNVIDFKDHGDKVS-VVL---ENGQ--CYAGDLLIGADGIWSKV 57 (475)
Q Consensus 2 ~L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~-v~~---~dG~--~~~adlvVGADG~~S~v 57 (475)
.|.+.|.+.+.. ..++.+++|+++..+++.|. |.. .+|+ .++|+.||.|.|..|.+
T Consensus 156 ~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~ 219 (621)
T 2h88_A 156 SLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRT 219 (621)
T ss_dssp HHHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred HHHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence 355667766543 37999999999987766432 333 4675 68999999999999975
No 175
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=73.21 E-value=3.7 Score=41.59 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=40.8
Q ss_pred hHHHHHhhccC--CCeEEcCcEEEEEEee-CCeEE-EEEc-CCc--EEEec-EEEEecCCCCccccc
Q 011888 2 TLQQILAKAVG--DEIILNESNVIDFKDH-GDKVS-VVLE-NGQ--CYAGD-LLIGADGIWSKVRKN 60 (475)
Q Consensus 2 ~L~~~L~~~~~--~~~i~~~~~v~~v~~~-~~~v~-v~~~-dG~--~~~ad-lvVGADG~~S~vR~~ 60 (475)
.|.+.|.+.+. ..+|+++++|+++..+ ++.|+ |... +|+ +++|+ .||.|.|..|.-+++
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~n~~m 269 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFAYNDKM 269 (510)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCTTCHHH
T ss_pred HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChhhCHHH
Confidence 45666666553 2479999999999987 44433 4443 343 68995 999999999864443
No 176
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=71.99 E-value=3 Score=41.74 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=36.0
Q ss_pred CeEEcCcEEEEEEeeCCe-EEEEE-----cCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDK-VSVVL-----ENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~-v~v~~-----~dG~~~~adlvVGADG~~S~v 57 (475)
..++++++|++++.++++ +.+++ .+++++.+|+||.|-|..+..
T Consensus 235 v~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~ 284 (474)
T 1zmd_A 235 FKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFT 284 (474)
T ss_dssp CEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECC
T ss_pred CEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCC
Confidence 479999999999987766 77775 356789999999999987654
No 177
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=71.53 E-value=2.8 Score=42.92 Aligned_cols=45 Identities=20% Similarity=0.117 Sum_probs=34.3
Q ss_pred CeEEcCcEEEEEEe-eCC------eEE-EEEc---CCc--EEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKD-HGD------KVS-VVLE---NGQ--CYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~-~~~------~v~-v~~~---dG~--~~~adlvVGADG~~S~vR 58 (475)
.+++++++|+++.. +++ .|. |.+. +|+ +++|+.||.|+|..|.+-
T Consensus 154 v~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~ 211 (540)
T 1chu_A 154 IRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVY 211 (540)
T ss_dssp EEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGS
T ss_pred CEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccccc
Confidence 47899999999987 434 432 4433 565 789999999999999874
No 178
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=71.25 E-value=5.4 Score=40.13 Aligned_cols=44 Identities=20% Similarity=0.198 Sum_probs=37.5
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEc--CC--cEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLE--NG--QCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~--dG--~~~~adlvVGADG~~S~v 57 (475)
..++.++++++++.+++++.+++. +| +++.+|.||-|-|....+
T Consensus 229 V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~ 276 (492)
T 3ic9_A 229 FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANV 276 (492)
T ss_dssp SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESC
T ss_pred cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCC
Confidence 578999999999988888888886 67 689999999999986543
No 179
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=71.08 E-value=3.4 Score=41.18 Aligned_cols=44 Identities=27% Similarity=0.395 Sum_probs=36.4
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEc-CC--cEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLE-NG--QCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~-dG--~~~~adlvVGADG~~S~v 57 (475)
..+++++++++++.+++++.++++ +| +++.+|+||-|-|.....
T Consensus 227 v~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~ 273 (464)
T 2a8x_A 227 VTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNV 273 (464)
T ss_dssp CEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECC
T ss_pred CEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccC
Confidence 479999999999887777888876 67 679999999999976543
No 180
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=70.53 E-value=7.9 Score=36.83 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=27.3
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
|.+.|.+.+.. .+++. ++|++++.+ .+ +||.||.|+|.+|.
T Consensus 144 ~~~~l~~~~~~~G~~i~~-~~v~~l~~~-----------~~-~a~~VV~A~G~~s~ 186 (363)
T 1c0p_A 144 YCQYLARELQKLGATFER-RTVTSLEQA-----------FD-GADLVVNATGLGAK 186 (363)
T ss_dssp HHHHHHHHHHHTTCEEEE-CCCSBGGGT-----------CS-SCSEEEECCGGGGG
T ss_pred HHHHHHHHHHHCCCEEEE-EEcccHhhc-----------Cc-CCCEEEECCCcchh
Confidence 44555555432 35666 777776543 12 89999999999994
No 181
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=69.98 E-value=4.9 Score=40.38 Aligned_cols=44 Identities=18% Similarity=0.174 Sum_probs=37.0
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcC---C--cEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLEN---G--QCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~d---G--~~~~adlvVGADG~~S~v 57 (475)
..++.++++++++.+++++.+++++ | +++.+|+||-|-|.....
T Consensus 254 V~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 302 (491)
T 3urh_A 254 IDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPST 302 (491)
T ss_dssp CEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECC
T ss_pred CEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCC
Confidence 3789999999999988888888874 5 579999999999976544
No 182
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=69.17 E-value=4.5 Score=41.42 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=37.7
Q ss_pred CeEEcCcEEEEEEe-------------------eCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKD-------------------HGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~-------------------~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
..+++++++++++. +++++++.+.+|+++.+|+||-|=|.....
T Consensus 207 V~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 269 (565)
T 3ntd_A 207 VDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPET 269 (565)
T ss_dssp CEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred CEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccch
Confidence 37899999999987 366788889999999999999999986654
No 183
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=68.59 E-value=3.8 Score=40.46 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=34.4
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
.++.+++|+.++.++. +|++++|+++++|.||.|.|.++.+.
T Consensus 76 ~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~p~~~ 117 (431)
T 1q1r_A 76 QLLGGTQVTAINRDRQ--QVILSDGRALDYDRLVLATGGRPRPL 117 (431)
T ss_dssp EEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred EEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEcCCCCccCC
Confidence 6788999999987665 56678898999999999999866543
No 184
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=66.79 E-value=6.2 Score=39.63 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=42.1
Q ss_pred hHHHHHhhccCCCeEEcC--cEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 2 TLQQILAKAVGDEIILNE--SNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 2 ~L~~~L~~~~~~~~i~~~--~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
.|-+.|.+.+....|+++ ++|++|+.++++| ++.+|++++||.||-|=......+
T Consensus 217 ~l~~~la~~l~~~~i~~~~~~~V~~I~~~~~~v--~~~~G~~~~ad~VI~a~p~~~~~~ 273 (484)
T 4dsg_A 217 IIYQAIKEKLPSEKLTFNSGFQAIAIDADAKTI--TFSNGEVVSYDYLISTVPFDNLLR 273 (484)
T ss_dssp HHHHHHHHHSCGGGEEECGGGCEEEEETTTTEE--EETTSCEEECSEEEECSCHHHHHH
T ss_pred HHHHHHHhhhhhCeEEECCCceeEEEEecCCEE--EECCCCEEECCEEEECCCHHHHHH
Confidence 355677777765578999 4699999887765 458899999999999877665543
No 185
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=66.36 E-value=7.3 Score=38.84 Aligned_cols=43 Identities=26% Similarity=0.158 Sum_probs=36.8
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCC---cEEEecEEEEecCCCCcc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENG---QCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG---~~~~adlvVGADG~~S~v 57 (475)
.++.+++|++++.+++++.+++.++ +++.+|+||-|=|.....
T Consensus 237 ~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~ 282 (476)
T 3lad_A 237 KILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT 282 (476)
T ss_dssp EEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECC
T ss_pred EEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccC
Confidence 6899999999998888888888865 679999999999976544
No 186
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=66.22 E-value=6.2 Score=39.11 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=35.1
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
..++++++|++++.+++++.....+|+++.+|.||-|-|....+
T Consensus 206 v~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~ 249 (452)
T 2cdu_A 206 VNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNT 249 (452)
T ss_dssp CEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECC
T ss_pred CEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCCH
Confidence 47999999999987666675333488899999999999986554
No 187
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=66.15 E-value=9.1 Score=39.51 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=39.0
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEee-CCeEE-EEE---cCCc--EEEecEEEEecCCCCcc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDH-GDKVS-VVL---ENGQ--CYAGDLLIGADGIWSKV 57 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~-~~~v~-v~~---~dG~--~~~adlvVGADG~~S~v 57 (475)
+.+.|.+.+. ..+++++++|+++..+ ++.|. |.. .+|+ +++|+.||.|.|..|.+
T Consensus 145 l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~~ 208 (588)
T 2wdq_A 145 LLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_dssp HHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred HHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCccc
Confidence 4455655543 3479999999999875 44332 333 4565 68999999999999865
No 188
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=65.54 E-value=10 Score=35.17 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=36.6
Q ss_pred HHHHhhccCC--CeEEcCcEEEEEEeeCCeEE-EEEcC----C--cEEEecEEEEecCCCCc
Q 011888 4 QQILAKAVGD--EIILNESNVIDFKDHGDKVS-VVLEN----G--QCYAGDLLIGADGIWSK 56 (475)
Q Consensus 4 ~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~-v~~~d----G--~~~~adlvVGADG~~S~ 56 (475)
.+.|.+.+.. ..+++++++++++.+++++. |++++ | +++.+|.||-|-|....
T Consensus 187 ~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~ 248 (320)
T 1trb_A 187 IKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN 248 (320)
T ss_dssp HHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEES
T ss_pred HHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCC
Confidence 3344444332 36889999999987765543 66654 5 47999999999996544
No 189
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=64.95 E-value=6.9 Score=38.95 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=42.0
Q ss_pred HHHHhhccCCCeEEcCcEEEEEEeeC-CeEEEEEc--CCc--EEEecEEEEecCCCCccc
Q 011888 4 QQILAKAVGDEIILNESNVIDFKDHG-DKVSVVLE--NGQ--CYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 4 ~~~L~~~~~~~~i~~~~~v~~v~~~~-~~v~v~~~--dG~--~~~adlvVGADG~~S~vR 58 (475)
.+.|.+.+. ..++.++++++++.++ +++.|+++ +|+ ++.+|+||-|=|.....-
T Consensus 217 ~~~l~~~l~-v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~ 275 (466)
T 3l8k_A 217 VNTLLSILK-LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIP 275 (466)
T ss_dssp HHHHHHHHC-CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCC
T ss_pred HHHHHhcCE-EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccc
Confidence 344444444 5688999999999877 88889988 676 899999999999765544
No 190
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=64.64 E-value=4.6 Score=40.21 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=39.7
Q ss_pred HHHhhccC--CCeEEcCcEEEEEEeeCCe-EEEE-EcCCcEEEecEEEEecCCCCcc
Q 011888 5 QILAKAVG--DEIILNESNVIDFKDHGDK-VSVV-LENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 5 ~~L~~~~~--~~~i~~~~~v~~v~~~~~~-v~v~-~~dG~~~~adlvVGADG~~S~v 57 (475)
+.|.+.+. ...++.+++|++++.++++ +.|+ +.+|+ +.+|.||-|=|..+..
T Consensus 215 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~ 270 (463)
T 4dna_A 215 RGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNT 270 (463)
T ss_dssp HHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESC
T ss_pred HHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCC
Confidence 34444443 2378999999999987665 6788 88898 9999999999986543
No 191
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=64.40 E-value=3.6 Score=40.95 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=39.8
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCe-EEEEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~-v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
|-+.|.+.+.. ..|+++++|++|+.++++ +.|+. +|.+++||.||-|=+....
T Consensus 236 l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~-~~~~~~ad~vv~a~p~~~~ 291 (477)
T 3nks_A 236 LPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-RDSSLEADHVISAIPASVL 291 (477)
T ss_dssp HHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC-SSCEEEESEEEECSCHHHH
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE-CCeEEEcCEEEECCCHHHH
Confidence 55566665543 479999999999987766 77765 5568999999999776543
No 192
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=63.84 E-value=7 Score=38.89 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=40.1
Q ss_pred HHHhhccC--CCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 5 QILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 5 ~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
+.|.+.+. ...++.+++|++++.+++.+.|++. +.++.+|.||-|-|..+.+.
T Consensus 220 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~ 274 (467)
T 1zk7_A 220 EAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTR 274 (467)
T ss_dssp HHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCT
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCC
Confidence 34444443 3479999999999987777777776 56899999999999877653
No 193
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=62.21 E-value=6.1 Score=38.57 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=33.4
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
..++.+++|++++ + + .|++++|+++.+|+||-|-|.....
T Consensus 202 V~i~~~~~v~~i~-~-~--~v~~~~g~~i~~D~vi~a~G~~p~~ 241 (408)
T 2gqw_A 202 VDLRFERSVTGSV-D-G--VVLLDDGTRIAADMVVVGIGVLAND 241 (408)
T ss_dssp CEEEESCCEEEEE-T-T--EEEETTSCEEECSEEEECSCEEECC
T ss_pred cEEEeCCEEEEEE-C-C--EEEECCCCEEEcCEEEECcCCCccH
Confidence 4789999999998 3 3 6778899999999999999976543
No 194
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=62.09 E-value=4.3 Score=39.39 Aligned_cols=38 Identities=8% Similarity=0.031 Sum_probs=33.3
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecC
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADG 52 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG 52 (475)
+++.+++++.++.+.+...+.+.+|+++.+|+||.|=|
T Consensus 218 ~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g 255 (401)
T 3vrd_B 218 EWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPP 255 (401)
T ss_dssp EEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCC
T ss_pred EEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecC
Confidence 68899999999888888889999999999999997644
No 195
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=62.02 E-value=5.5 Score=39.58 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=39.9
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEee--CCeEE-EEEcCCcEEEecEEEEecCCCCc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDH--GDKVS-VVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~--~~~v~-v~~~dG~~~~adlvVGADG~~S~ 56 (475)
|-+.|.+.+. ..+++++++|++|..+ ++++. |+. +|++++||.||.|=|..+.
T Consensus 244 l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~ 301 (453)
T 2bcg_G 244 LPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE 301 (453)
T ss_dssp HHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred HHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence 4455665543 3479999999999987 66653 544 6889999999999998864
No 196
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=61.31 E-value=8.5 Score=38.53 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=39.2
Q ss_pred HHHHHhhccCCC--eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCC
Q 011888 3 LQQILAKAVGDE--IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW 54 (475)
Q Consensus 3 L~~~L~~~~~~~--~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~ 54 (475)
|-+.|.+.+... .++++++|+.|..++.. +++.||++++||.||-+=-..
T Consensus 224 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~--v~~~~G~~~~ad~vI~t~P~~ 275 (513)
T 4gde_A 224 IWIAVANTLPKEKTRFGEKGKVTKVNANNKT--VTLQDGTTIGYKKLVSTMAVD 275 (513)
T ss_dssp HHHHHHHTSCGGGEEESGGGCEEEEETTTTE--EEETTSCEEEEEEEEECSCHH
T ss_pred HHHHHHHHHHhcCeeeecceEEEEEEccCCE--EEEcCCCEEECCEEEECCCHH
Confidence 556777777653 78999999999887764 557899999999999775443
No 197
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=61.07 E-value=22 Score=34.99 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=36.3
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEc---CCc--EEEecEEEEecCCCCc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLE---NGQ--CYAGDLLIGADGIWSK 56 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~---dG~--~~~adlvVGADG~~S~ 56 (475)
..++.+++|++++.+++++.|++. +|+ ++.+|+||-|=|....
T Consensus 331 v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~ 378 (463)
T 3s5w_A 331 HAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQ 378 (463)
T ss_dssp SEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECC
T ss_pred eEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCC
Confidence 379999999999998888888887 675 4899999999996543
No 198
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=60.21 E-value=4.8 Score=40.13 Aligned_cols=43 Identities=19% Similarity=0.073 Sum_probs=32.9
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCC--cEEEecEEEEecCCCCcccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENG--QCYAGDLLIGADGIWSKVRK 59 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG--~~~~adlvVGADG~~S~vR~ 59 (475)
..++.++.+. .+.+.++|++.+| +++++|.||.|+|.++.+-.
T Consensus 111 v~~~~g~~~~---~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~ 155 (470)
T 1dxl_A 111 VTYVKGYGKF---VSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLP 155 (470)
T ss_dssp CEEEESCEEE---EETTEEEECCSSSCCEEEECSEEEECCCEEECCBT
T ss_pred CEEEEeEEEE---ecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCC
Confidence 3577777653 3567788887788 68999999999999876554
No 199
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=60.05 E-value=6.8 Score=38.73 Aligned_cols=53 Identities=21% Similarity=0.382 Sum_probs=37.6
Q ss_pred HHHHHhhccCC--CeEEcCcEEEEEEeeCCeE-EEEEcCCcEEEecEEEEecCCCCcc
Q 011888 3 LQQILAKAVGD--EIILNESNVIDFKDHGDKV-SVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 3 L~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v-~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
+.+.|.+.+.. ..++++++|++++.+ +.+ .+.+ +|+++.+|.||.|-|..+.+
T Consensus 193 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~v~~v~~-~~~~i~~d~vi~a~G~~p~~ 248 (447)
T 1nhp_A 193 FTDVLTEEMEANNITIATGETVERYEGD-GRVQKVVT-DKNAYDADLVVVAVGVRPNT 248 (447)
T ss_dssp HHHHHHHHHHTTTEEEEESCCEEEEECS-SBCCEEEE-SSCEEECSEEEECSCEEESC
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEcc-CcEEEEEE-CCCEEECCEEEECcCCCCCh
Confidence 34445554433 378999999999876 444 4555 66789999999999987653
No 200
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=57.07 E-value=10 Score=37.92 Aligned_cols=43 Identities=14% Similarity=0.030 Sum_probs=34.9
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEE-cCCc--EEEecEEEEecCCCCc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVL-ENGQ--CYAGDLLIGADGIWSK 56 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~-~dG~--~~~adlvVGADG~~S~ 56 (475)
..++.+++|+.++.+++.|++.. .+|+ ++++|.||.|.|....
T Consensus 108 v~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~ 153 (480)
T 3cgb_A 108 IDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV 153 (480)
T ss_dssp CEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred CEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCccc
Confidence 36888999999988888787765 4576 7999999999997543
No 201
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=55.75 E-value=6.7 Score=39.27 Aligned_cols=42 Identities=17% Similarity=0.030 Sum_probs=31.0
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCC------------cEEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENG------------QCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG------------~~~~adlvVGADG~~S~vR 58 (475)
..++.++.+. .+++.++|++.+| .++++|.||.|+|.++.+-
T Consensus 110 v~~~~g~~~~---~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~~ 163 (482)
T 1ojt_A 110 VDVIQGDGQF---LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKL 163 (482)
T ss_dssp CEEEEEEEEE---EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEECCC
T ss_pred cEEEeeEEEE---ccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCCCC
Confidence 3566666543 3567788877666 6799999999999987544
No 202
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=55.51 E-value=12 Score=37.34 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=37.7
Q ss_pred HHHhhccC--CCeEEcCcEEEEEEeeCC-eEEEEEcCCc-----EEEecEEEEecCCCCc
Q 011888 5 QILAKAVG--DEIILNESNVIDFKDHGD-KVSVVLENGQ-----CYAGDLLIGADGIWSK 56 (475)
Q Consensus 5 ~~L~~~~~--~~~i~~~~~v~~v~~~~~-~v~v~~~dG~-----~~~adlvVGADG~~S~ 56 (475)
+.|.+.+. ...++.++++++++.+++ .+.|++.+++ ++.+|+||-|=|....
T Consensus 231 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~ 290 (483)
T 3dgh_A 231 ELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGL 290 (483)
T ss_dssp HHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEEC
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccC
Confidence 34444433 236899999999987654 4778887764 7899999999997543
No 203
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=51.18 E-value=7.3 Score=38.88 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=30.5
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCC--cE------EEecEEEEecCCCC
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENG--QC------YAGDLLIGADGIWS 55 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG--~~------~~adlvVGADG~~S 55 (475)
..++.++.+. .+++.++|++.+| ++ +++|.||.|+|+++
T Consensus 111 v~~~~g~~~~---~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p 157 (478)
T 1v59_A 111 VTYYKGNGSF---EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEV 157 (478)
T ss_dssp CEEEESEEEE---SSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEE
T ss_pred CEEEEEEEEE---ccCCeEEEEecCCCcccccccceEEeCEEEECcCCCC
Confidence 3677777654 2567788888777 56 99999999999876
No 204
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=51.10 E-value=16 Score=34.50 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=34.0
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEE-ecEEEEecCCCCc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYA-GDLLIGADGIWSK 56 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~-adlvVGADG~~S~ 56 (475)
..++.+++|++++.+++++.|++.||+++. +|.||-|=|....
T Consensus 230 v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~ 273 (369)
T 3d1c_A 230 IEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDAT 273 (369)
T ss_dssp EEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGG
T ss_pred EEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCc
Confidence 468889999999877778888899997665 5888888776543
No 205
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=50.97 E-value=20 Score=37.58 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=39.5
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeCCe---EEEEE-cCCc--EEEecEEEEecCCCCcc
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHGDK---VSVVL-ENGQ--CYAGDLLIGADGIWSKV 57 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~~~---v~v~~-~dG~--~~~adlvVGADG~~S~v 57 (475)
|...|.+.+. ...++.++.|+++..+++. |.+.. .+|+ .++|+.||-|.|..|.+
T Consensus 160 l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~ 222 (660)
T 2bs2_A 160 MLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRI 222 (660)
T ss_dssp HHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGG
T ss_pred HHHHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcchhh
Confidence 4455555543 3479999999999877664 33322 4675 58999999999999865
No 206
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=50.63 E-value=19 Score=36.65 Aligned_cols=45 Identities=16% Similarity=0.066 Sum_probs=40.1
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
..++.+++++.++..++.+.|.+.+++++.+|.|+-|=|+.-.+-
T Consensus 278 i~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~ 322 (542)
T 4b1b_A 278 VMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDID 322 (542)
T ss_dssp CEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCG
T ss_pred ceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCcc
Confidence 378999999999999999999999999999999999999766554
No 207
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=50.41 E-value=6.8 Score=38.91 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=33.7
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCC--cEEEecEEEEecCCCCccc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENG--QCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG--~~~~adlvVGADG~~S~vR 58 (475)
..++.+++|++++. + +++++..+| +++.+|.||.|-|....+-
T Consensus 227 v~i~~~~~v~~i~~-~-~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~ 271 (458)
T 1lvl_A 227 IALHLGHSVEGYEN-G-CLLANDGKGGQLRLEADRVLVAVGRRPRTK 271 (458)
T ss_dssp CEEETTCEEEEEET-T-EEEEECSSSCCCEECCSCEEECCCEEECCS
T ss_pred CEEEECCEEEEEEe-C-CEEEEECCCceEEEECCEEEECcCCCcCCC
Confidence 47999999999986 3 466664467 6899999999999876543
No 208
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=49.96 E-value=27 Score=32.87 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=33.2
Q ss_pred CeEEcCcEEEEEEeeCCeE-EEEE--cCC--cEEEecEEEEecCCCCc
Q 011888 14 EIILNESNVIDFKDHGDKV-SVVL--ENG--QCYAGDLLIGADGIWSK 56 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v-~v~~--~dG--~~~~adlvVGADG~~S~ 56 (475)
..+++++++++++.+++++ .|++ .+| +++.+|+||-|-|....
T Consensus 217 v~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~ 264 (360)
T 3ab1_A 217 IDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSN 264 (360)
T ss_dssp EEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCS
T ss_pred eEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCC
Confidence 3688999999998876654 3555 477 57999999999996654
No 209
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=48.77 E-value=20 Score=37.38 Aligned_cols=48 Identities=19% Similarity=0.105 Sum_probs=35.2
Q ss_pred HHHHHhhccC--CCeEEcCcEEEEEEeeC--CeEE-EEEcCCcEEEecEEEEe
Q 011888 3 LQQILAKAVG--DEIILNESNVIDFKDHG--DKVS-VVLENGQCYAGDLLIGA 50 (475)
Q Consensus 3 L~~~L~~~~~--~~~i~~~~~v~~v~~~~--~~v~-v~~~dG~~~~adlvVGA 50 (475)
|-++|.+.+. .++++++++|..|..++ ++++ |+..+|++++||.||..
T Consensus 380 L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~ 432 (650)
T 1vg0_A 380 LPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIE 432 (650)
T ss_dssp HHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEE
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEC
Confidence 4455555443 35899999999998776 5454 44577999999999983
No 210
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=48.29 E-value=14 Score=35.97 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=32.8
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
.++.+++|+.++.+.. +|++++|+++++|.||.|.|....
T Consensus 75 ~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~ 114 (408)
T 2gqw_A 75 EWLLGVTAQSFDPQAH--TVALSDGRTLPYGTLVLATGAAPR 114 (408)
T ss_dssp EEEETCCEEEEETTTT--EEEETTSCEEECSEEEECCCEEEC
T ss_pred EEEcCCEEEEEECCCC--EEEECCCCEEECCEEEECCCCCCC
Confidence 6888999999987655 456678889999999999998543
No 211
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=47.95 E-value=30 Score=32.01 Aligned_cols=43 Identities=12% Similarity=0.009 Sum_probs=32.5
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEc---CC--cEEEecEEEEecCCCCc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLE---NG--QCYAGDLLIGADGIWSK 56 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~---dG--~~~~adlvVGADG~~S~ 56 (475)
..+++++++++++.++....|+++ +| +++.+|+||-|=|..+.
T Consensus 206 v~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 253 (335)
T 2zbw_A 206 LEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITK 253 (335)
T ss_dssp SEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEE
T ss_pred eEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCC
Confidence 378999999999875443346665 67 57999999999886643
No 212
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=47.94 E-value=24 Score=36.71 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=38.9
Q ss_pred HHHHHhhccC---CC-eEEcCcEEEEEEeeCC---eEE-EE---EcCCc--EEEecEEEEecCCCCcc
Q 011888 3 LQQILAKAVG---DE-IILNESNVIDFKDHGD---KVS-VV---LENGQ--CYAGDLLIGADGIWSKV 57 (475)
Q Consensus 3 L~~~L~~~~~---~~-~i~~~~~v~~v~~~~~---~v~-v~---~~dG~--~~~adlvVGADG~~S~v 57 (475)
+.++|.+.+. .. .++.+++|+++..+++ .|. |. ..+|+ +++|+.||.|.|..|.+
T Consensus 153 ~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~ 220 (643)
T 1jnr_A 153 YKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLL 220 (643)
T ss_dssp HHHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSS
T ss_pred HHHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCccccc
Confidence 3445554442 34 6899999999987765 543 22 25665 68999999999999864
No 213
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=47.54 E-value=8.2 Score=40.80 Aligned_cols=48 Identities=13% Similarity=-0.083 Sum_probs=34.3
Q ss_pred HHHHHhhcc-CCCeEEcCcEEE--EEEeeCCe-------EEEEE-cCCc--EEEecEEEEe
Q 011888 3 LQQILAKAV-GDEIILNESNVI--DFKDHGDK-------VSVVL-ENGQ--CYAGDLLIGA 50 (475)
Q Consensus 3 L~~~L~~~~-~~~~i~~~~~v~--~v~~~~~~-------v~v~~-~dG~--~~~adlvVGA 50 (475)
|-+.|.+.+ ....|+++++|+ .|.+++++ |+|+. .+|+ +++||+||-|
T Consensus 349 L~~aLa~~l~~g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvT 409 (721)
T 3ayj_A 349 FIRNLFLKAQNVGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHNAVHSEAYDFVILA 409 (721)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEETTCCEEEEEESEEEEC
T ss_pred HHHHHHHhcccCCceEeCCEEEeeeEEECCCCCccccceEEEEEecCCceEEEEcCEEEEC
Confidence 345555554 223477899999 99987655 88844 5676 7999999984
No 214
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=46.10 E-value=11 Score=36.54 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=30.2
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCC
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW 54 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~ 54 (475)
.+++.+++|++++. ++ |+++||+++.+|+||-|=|..
T Consensus 233 V~~~~~~~v~~i~~--~~--v~~~~g~~~~~D~vi~a~G~~ 269 (409)
T 3h8l_A 233 IKLVHNFKIKEIRE--HE--IVDEKGNTIPADITILLPPYT 269 (409)
T ss_dssp CEEECSCCEEEECS--SE--EEETTSCEEECSEEEEECCEE
T ss_pred CEEEcCCceEEECC--Ce--EEECCCCEEeeeEEEECCCCC
Confidence 47889999999864 33 678899999999999998754
No 215
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=46.02 E-value=13 Score=38.09 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=34.7
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
..++.+++|++++.++++ |++.+|+++.+|.||-|=|..+..
T Consensus 243 V~i~~~~~v~~i~~~~~~--v~~~~g~~i~~D~Vi~a~G~~p~~ 284 (588)
T 3ics_A 243 VELVFEDGVDALEENGAV--VRLKSGSVIQTDMLILAIGVQPES 284 (588)
T ss_dssp CEEECSCCEEEEEGGGTE--EEETTSCEEECSEEEECSCEEECC
T ss_pred CEEEECCeEEEEecCCCE--EEECCCCEEEcCEEEEccCCCCCh
Confidence 378999999999876554 667899999999999999986543
No 216
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=45.62 E-value=21 Score=35.40 Aligned_cols=43 Identities=26% Similarity=0.050 Sum_probs=33.9
Q ss_pred CeEEcCcEEEEEEeeCCe--EEEEEcC---C----cEEEecEEEEecCCCCc
Q 011888 14 EIILNESNVIDFKDHGDK--VSVVLEN---G----QCYAGDLLIGADGIWSK 56 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~--v~v~~~d---G----~~~~adlvVGADG~~S~ 56 (475)
..++.++++++++.++++ +.+++.+ | +++.+|.||-|=|....
T Consensus 243 v~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~ 294 (478)
T 3dk9_A 243 VEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPN 294 (478)
T ss_dssp CEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEES
T ss_pred CEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccC
Confidence 378999999999876655 6777775 2 57899999999996543
No 217
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=45.61 E-value=21 Score=35.58 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=36.2
Q ss_pred HHHHhhccCC--CeEEcCcEEEEEEeeCCeE-EEEEcCCcEEEecEEEEecCCCCcc
Q 011888 4 QQILAKAVGD--EIILNESNVIDFKDHGDKV-SVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 4 ~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v-~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
.+.|.+.+.. ..++.+++|++++. ++++ .+.+ +|+++.+|+||-|-|....+
T Consensus 239 ~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~ 293 (490)
T 2bc0_A 239 TDLMAKNMEEHGIQLAFGETVKEVAG-NGKVEKIIT-DKNEYDVDMVILAVGFRPNT 293 (490)
T ss_dssp HHHHHHHHHTTTCEEEETCCEEEEEC-SSSCCEEEE-SSCEEECSEEEECCCEEECC
T ss_pred HHHHHHHHHhCCeEEEeCCEEEEEEc-CCcEEEEEE-CCcEEECCEEEECCCCCcCh
Confidence 3444444432 37899999999986 3334 3544 78899999999999975443
No 218
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=44.05 E-value=16 Score=36.60 Aligned_cols=44 Identities=25% Similarity=0.182 Sum_probs=35.5
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
..++.+++|++++.++....+.+.+|+++.+|+||-|=|..+..
T Consensus 272 V~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~ 315 (493)
T 1y56_A 272 IDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDI 315 (493)
T ss_dssp CEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEECC
T ss_pred cEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCc
Confidence 36889999999986554445678889999999999999977553
No 219
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=43.80 E-value=21 Score=35.26 Aligned_cols=41 Identities=22% Similarity=0.108 Sum_probs=31.3
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCC-cEEEecEEEEecCCCCccc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENG-QCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG-~~~~adlvVGADG~~S~vR 58 (475)
.++.++.+. .+.+.++|+..+| +++++|.||.|.|.++..-
T Consensus 107 ~~~~g~~~~---id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~ 148 (455)
T 1ebd_A 107 EIVKGEAYF---VDANTVRVVNGDSAQTYTFKNAIIATGSRPIEL 148 (455)
T ss_dssp EEEESEEEE---EETTEEEEEETTEEEEEECSEEEECCCEEECCB
T ss_pred EEEEEEEEE---ccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCC
Confidence 577777543 3567788888888 6899999999999865443
No 220
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=42.51 E-value=24 Score=32.58 Aligned_cols=42 Identities=19% Similarity=0.111 Sum_probs=32.6
Q ss_pred CeEEcCcEEEEEEeeCCeEE-EEEcC-----CcEEEecEEEEecCCCC
Q 011888 14 EIILNESNVIDFKDHGDKVS-VVLEN-----GQCYAGDLLIGADGIWS 55 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~-v~~~d-----G~~~~adlvVGADG~~S 55 (475)
..++.++++++++.+++++. |++++ ++++.+|+||-|=|...
T Consensus 224 v~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p 271 (338)
T 3itj_A 224 IEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTP 271 (338)
T ss_dssp EEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEE
T ss_pred eEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCC
Confidence 36889999999998776544 66665 35799999999988643
No 221
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=41.70 E-value=9.6 Score=35.75 Aligned_cols=41 Identities=17% Similarity=0.145 Sum_probs=31.4
Q ss_pred cCCcEEEEcccccccCCccccchhh--hHHHHHHHHHHHHHHh
Q 011888 172 GRGRVTLLGDSVHAMQPNLGQGGCM--AIEDGYQLAVELEKAC 212 (475)
Q Consensus 172 ~~grvvLvGDAAH~~~P~~GqG~n~--al~Da~~La~~L~~~~ 212 (475)
..++|+.+||||..+++...+|... +|.++...|+.+.+++
T Consensus 282 ~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~l 324 (326)
T 3fpz_A 282 GVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHF 324 (326)
T ss_dssp TSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHh
Confidence 3478999999999888888777433 4677777888877765
No 222
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=41.16 E-value=22 Score=35.37 Aligned_cols=51 Identities=25% Similarity=0.388 Sum_probs=35.4
Q ss_pred HHHhhccC--CCeEEcCcEEEEEEeeCCeE-EEEEcCCcEEEecEEEEecCCCCcc
Q 011888 5 QILAKAVG--DEIILNESNVIDFKDHGDKV-SVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 5 ~~L~~~~~--~~~i~~~~~v~~v~~~~~~v-~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
+.|.+.+. ...++++++|++++.+ +++ .+.+ ++.++.+|.||-|-|..+..
T Consensus 231 ~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~v~~v~~-~~~~i~~D~vi~a~G~~p~~ 284 (480)
T 3cgb_A 231 EYIYKEADKHHIEILTNENVKAFKGN-ERVEAVET-DKGTYKADLVLVSVGVKPNT 284 (480)
T ss_dssp HHHHHHHHHTTCEEECSCCEEEEEES-SBEEEEEE-TTEEEECSEEEECSCEEESC
T ss_pred HHHHHHHHHcCcEEEcCCEEEEEEcC-CcEEEEEE-CCCEEEcCEEEECcCCCcCh
Confidence 34444433 2478999999999875 444 3444 45689999999999976543
No 223
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=40.17 E-value=46 Score=30.30 Aligned_cols=42 Identities=14% Similarity=-0.012 Sum_probs=32.3
Q ss_pred CeEEcCcEEEEEEeeCCeE-EEEEc---CCc--EEEecEEEEecCCCC
Q 011888 14 EIILNESNVIDFKDHGDKV-SVVLE---NGQ--CYAGDLLIGADGIWS 55 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v-~v~~~---dG~--~~~adlvVGADG~~S 55 (475)
..+++++++++++.+++++ .|+++ +|+ ++.+|.||-|-|...
T Consensus 194 v~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p 241 (311)
T 2q0l_A 194 IEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDV 241 (311)
T ss_dssp EEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEE
T ss_pred eEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCcc
Confidence 3688999999998876654 45665 675 789999999988643
No 224
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=39.72 E-value=27 Score=33.62 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=32.4
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCC
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI 53 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~ 53 (475)
.++.+++|++++.+.. +|++++|+++.+|.||-|=|+
T Consensus 78 ~~~~~~~V~~id~~~~--~v~~~~g~~~~yd~lvlAtG~ 114 (385)
T 3klj_A 78 KVITSEFATSIDPNNK--LVTLKSGEKIKYEKLIIASGS 114 (385)
T ss_dssp EEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCE
T ss_pred EEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEecCC
Confidence 6889999999987666 567789999999999999996
No 225
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=38.88 E-value=42 Score=30.60 Aligned_cols=42 Identities=21% Similarity=0.095 Sum_probs=32.9
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcC---Cc--EEEecEEEEecCCCCc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLEN---GQ--CYAGDLLIGADGIWSK 56 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~d---G~--~~~adlvVGADG~~S~ 56 (475)
.+++++++++++.++....|++.+ |+ ++.+|+||-|=|....
T Consensus 206 ~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~ 252 (323)
T 3f8d_A 206 EFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPP 252 (323)
T ss_dssp EEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEECC
T ss_pred EEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCCC
Confidence 688999999998876555577765 76 7899999999886443
No 226
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=36.89 E-value=19 Score=36.02 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=32.7
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcC--CcEEEecEEEEecCCCCc
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLEN--GQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~d--G~~~~adlvVGADG~~S~ 56 (475)
..++.+++|+.++.+++.|++.. + ++++++|.||.|.|....
T Consensus 107 v~v~~~~~v~~i~~~~~~v~v~~-~g~~~~~~~d~lviAtG~~p~ 150 (490)
T 2bc0_A 107 AKVYMESPVQSIDYDAKTVTALV-DGKNHVETYDKLIFATGSQPI 150 (490)
T ss_dssp CEEETTCCEEEEETTTTEEEEEE-TTEEEEEECSEEEECCCEEEC
T ss_pred CEEEeCCEEEEEECCCCEEEEEe-CCcEEEEECCEEEECCCCCcC
Confidence 35778999999988777776652 4 357999999999996543
No 227
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=36.35 E-value=34 Score=33.52 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=36.0
Q ss_pred HHHhhccCC-CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCC
Q 011888 5 QILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 55 (475)
Q Consensus 5 ~~L~~~~~~-~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S 55 (475)
+.|.+.+.. ..++.++++++++.++ ++...+.+|+++.+|.||-|=|...
T Consensus 194 ~~l~~~l~~~v~i~~~~~v~~i~~~~-~v~~v~~~g~~i~~D~Vv~a~G~~p 244 (449)
T 3kd9_A 194 DILEEKLKKHVNLRLQEITMKIEGEE-RVEKVVTDAGEYKAELVILATGIKP 244 (449)
T ss_dssp HHHHHHHTTTSEEEESCCEEEEECSS-SCCEEEETTEEEECSEEEECSCEEE
T ss_pred HHHHHHHHhCcEEEeCCeEEEEeccC-cEEEEEeCCCEEECCEEEEeeCCcc
Confidence 344444433 4688899999998655 4544466888999999999999754
No 228
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=35.99 E-value=15 Score=35.17 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=30.9
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 57 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~v 57 (475)
.++.+++|++++ .+ .|++++|+ +.+|+||-|-|.....
T Consensus 199 ~i~~~~~v~~i~--~~--~v~~~~g~-i~~D~vi~a~G~~p~~ 236 (367)
T 1xhc_A 199 KFFLNSELLEAN--EE--GVLTNSGF-IEGKVKICAIGIVPNV 236 (367)
T ss_dssp EEECSCCEEEEC--SS--EEEETTEE-EECSCEEEECCEEECC
T ss_pred EEEcCCEEEEEE--ee--EEEECCCE-EEcCEEEECcCCCcCH
Confidence 688999999987 33 36678887 9999999999976654
No 229
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=35.20 E-value=30 Score=33.83 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=32.0
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCccc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR 58 (475)
.++ ..+|+.++.+.. +|++++|+++.+|.||-|-|..+..-
T Consensus 75 ~~~-~~~v~~id~~~~--~V~~~~g~~i~~d~lviAtG~~~~~~ 115 (437)
T 3sx6_A 75 HFI-AQSAEQIDAEAQ--NITLADGNTVHYDYLMIATGPKLAFE 115 (437)
T ss_dssp EEE-CSCEEEEETTTT--EEEETTSCEEECSEEEECCCCEECGG
T ss_pred EEE-EeEEEEEEcCCC--EEEECCCCEEECCEEEECCCCCcCcc
Confidence 444 468999987665 56778999999999999999865543
No 230
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=34.96 E-value=49 Score=30.05 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=31.0
Q ss_pred eEEcCcEEEEEEeeCCeEE-EEEc--CCc--EEEecEEEEecCCC
Q 011888 15 IILNESNVIDFKDHGDKVS-VVLE--NGQ--CYAGDLLIGADGIW 54 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~-v~~~--dG~--~~~adlvVGADG~~ 54 (475)
.+++++++++++.+++++. |++. +|+ ++.+|+||-|=|..
T Consensus 199 ~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~ 243 (315)
T 3r9u_A 199 ELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLN 243 (315)
T ss_dssp EEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEE
T ss_pred EEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCC
Confidence 6889999999988775532 4454 786 78899999998854
No 231
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=34.02 E-value=43 Score=33.30 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=36.4
Q ss_pred HHHhhccC--CCeEEcCcEEEEEEee-CCeEEEEEcC---Cc--EEEecEEEEecCCCCc
Q 011888 5 QILAKAVG--DEIILNESNVIDFKDH-GDKVSVVLEN---GQ--CYAGDLLIGADGIWSK 56 (475)
Q Consensus 5 ~~L~~~~~--~~~i~~~~~v~~v~~~-~~~v~v~~~d---G~--~~~adlvVGADG~~S~ 56 (475)
+.|.+.+. ...++.++++++++.. ++.+.+++.+ |+ ++.+|+||-|=|....
T Consensus 229 ~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~ 288 (488)
T 3dgz_A 229 SLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPE 288 (488)
T ss_dssp HHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEES
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcc
Confidence 34444443 2378999999999874 4457777765 55 4789999999996543
No 232
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=31.60 E-value=36 Score=33.98 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=32.3
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCC
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 55 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S 55 (475)
.++.+++|++++.+.. +|++++|+++.+|.||-|-|+..
T Consensus 106 ~~~~g~~v~~id~~~~--~V~~~~g~~i~yd~lviATGs~p 144 (493)
T 1m6i_A 106 AVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGGTP 144 (493)
T ss_dssp EEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCEEE
T ss_pred EEEcCCEEEEEECCCC--EEEECCCCEEECCEEEECCCCCC
Confidence 5778999999987665 46678899999999999999643
No 233
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=30.73 E-value=39 Score=31.01 Aligned_cols=42 Identities=21% Similarity=0.105 Sum_probs=32.1
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcC-----CcEEEecEEEEecCCCC
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLEN-----GQCYAGDLLIGADGIWS 55 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~d-----G~~~~adlvVGADG~~S 55 (475)
..++.++++++++.+++.+.|++++ ++++.+|+||-|=|...
T Consensus 204 v~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p 250 (332)
T 3lzw_A 204 VNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVS 250 (332)
T ss_dssp CEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEEC
T ss_pred eEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCC
Confidence 3688999999998776655666665 35789999999888543
No 234
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=30.59 E-value=76 Score=29.11 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=30.7
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEc---CCc--EEEecEEEEecCCCC
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLE---NGQ--CYAGDLLIGADGIWS 55 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~---dG~--~~~adlvVGADG~~S 55 (475)
..++++++++++..++....|+++ +|+ ++.+|.||-|=|...
T Consensus 203 v~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p 249 (325)
T 2q7v_A 203 MKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVP 249 (325)
T ss_dssp EEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEE
T ss_pred ceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCC
Confidence 368899999999875432345554 675 789999999888543
No 235
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=30.33 E-value=19 Score=24.65 Aligned_cols=13 Identities=23% Similarity=0.320 Sum_probs=10.6
Q ss_pred cEEeCCCCEEEeC
Q 011888 431 PARFRPSDTIEFG 443 (475)
Q Consensus 431 ~~~l~~gd~i~~g 443 (475)
...|++||.|.|=
T Consensus 46 ~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 46 DRPLRDGDVVEVV 58 (64)
T ss_dssp CCCCCTTCEEEEE
T ss_pred CcCCCCCCEEEEE
Confidence 4689999999874
No 236
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=30.06 E-value=39 Score=33.14 Aligned_cols=42 Identities=17% Similarity=0.052 Sum_probs=32.6
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEc-C--CcEEEecEEEEecCCCCc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLE-N--GQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~-d--G~~~~adlvVGADG~~S~ 56 (475)
.++.+++++.++.+++.+++... + ++++++|.||.|.|....
T Consensus 74 ~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~ 118 (452)
T 2cdu_A 74 NVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPT 118 (452)
T ss_dssp EEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred EEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcC
Confidence 57789999999887777776542 2 457999999999996543
No 237
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=29.95 E-value=27 Score=26.43 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=21.5
Q ss_pred ccceeeccCCCceeecCCCCcEEeCCCCEEEeCCC
Q 011888 411 EHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 445 (475)
Q Consensus 411 ~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 445 (475)
.+-..|||+ .++ ....|++||.|.+=..
T Consensus 58 ~~~V~Vng~-----~v~--~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 58 TNKIGIFSR-----PIK--LTDVLKEGDRIEIYRP 85 (97)
T ss_dssp TSEEEEEEC-----SCC--TTCBCCTTCEEEECCC
T ss_pred ccEEEEcCE-----ECC--CCccCCCCCEEEEEec
Confidence 566789998 665 3467999999988664
No 238
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=29.65 E-value=22 Score=27.60 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=19.4
Q ss_pred eeeccCCCceeecCCCCcEEeCCCCEEEeCC
Q 011888 414 TYVTDNEGRRYRVSSNFPARFRPSDTIEFGS 444 (475)
Q Consensus 414 t~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~ 444 (475)
++|||. -|++..+-.++|++||.|.|=.
T Consensus 70 VLVNg~---d~e~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 70 VLVNSC---DAEVVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp EEESSS---BHHHHTSSCCCCCSSCEEEEEE
T ss_pred EEECCe---eeeccCCcccCCCCcCEEEEeC
Confidence 677886 1122355678999999998843
No 239
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=28.86 E-value=44 Score=33.03 Aligned_cols=41 Identities=15% Similarity=0.048 Sum_probs=30.0
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcC-C-cEEEecEEEEecCCCCccc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLEN-G-QCYAGDLLIGADGIWSKVR 58 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~d-G-~~~~adlvVGADG~~S~vR 58 (475)
.++.++.+ .+ +.+.++|++.+ | +++++|.||.|.|.++.+.
T Consensus 113 ~~~~g~~~-~~--~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p 155 (474)
T 1zmd_A 113 VHVNGYGK-IT--GKNQVTATKADGGTQVIDTKNILIATGSEVTPF 155 (474)
T ss_dssp EEEESEEE-EE--ETTEEEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred EEEEEEEE-Ee--cCCEEEEEecCCCcEEEEeCEEEECCCCCCCCC
Confidence 56666543 33 56778888877 5 5799999999999876543
No 240
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=28.39 E-value=21 Score=25.77 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=19.4
Q ss_pred ceeeccCCCceeecCCCC--cEEeCCCCEEEeCC
Q 011888 413 GTYVTDNEGRRYRVSSNF--PARFRPSDTIEFGS 444 (475)
Q Consensus 413 Gt~vn~~~~~~~~~~~~~--~~~l~~gd~i~~g~ 444 (475)
-+.+||. -+++.. ...|++||.|.+=.
T Consensus 36 AVavNg~-----iVpr~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 36 TVELNGE-----VLEREAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEETTE-----ECCTTHHHHCEECSSBCEEECC
T ss_pred EEEECCE-----ECChHHcCcccCCCCCEEEEEe
Confidence 3667887 665543 36899999998743
No 241
>3ega_A Pellino-2, protein pellino homolog 2; FHA domain, E3 ubiquitin ligase, substrate binding phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3egb_A
Probab=27.77 E-value=2.4e+02 Score=25.03 Aligned_cols=33 Identities=15% Similarity=0.417 Sum_probs=24.9
Q ss_pred CCCEEecCCCCCCCCCceeeeC---------------CccccccceEEEEE
Q 011888 364 NEPYLIGSESHEDFSRTSIVIP---------------SAQVSKMHARISYK 399 (475)
Q Consensus 364 ~~~~~iGR~~~~~~~~~~i~~~---------------~~~vSr~Ha~i~~~ 399 (475)
...+-|||+.+.. +|.++- ..+|||.-|+|.++
T Consensus 87 tDMFQIGRste~p---IDFvV~dt~~g~~~~~~~~~~~StISRfACRI~~d 134 (263)
T 3ega_A 87 TDMFQVGRSTESP---IDFVVTDTISGSQNTDEAQITQSTISRFACRIVCD 134 (263)
T ss_dssp EEEEEEESCCSTT---CSEECCCC----------CCCCCCSCSSCEEEEEE
T ss_pred cchhhhcCCCCCC---CCeEEeccccccccCCcCCcccchhhheeEEEEec
Confidence 4557899999876 555542 35699999999987
No 242
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=27.76 E-value=73 Score=28.88 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=30.7
Q ss_pred CeEEcCcEEEEEEeeCCeE-EEEEcC---Cc--EEEecEEEEecCCCC
Q 011888 14 EIILNESNVIDFKDHGDKV-SVVLEN---GQ--CYAGDLLIGADGIWS 55 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v-~v~~~d---G~--~~~adlvVGADG~~S 55 (475)
..++.+++++++..+++.+ .|++++ |+ ++.+|.||-|=|...
T Consensus 195 v~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p 242 (310)
T 1fl2_A 195 VDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLP 242 (310)
T ss_dssp EEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEE
T ss_pred eEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCcc
Confidence 3788999999998765554 455553 53 688999998877543
No 243
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=27.70 E-value=58 Score=31.83 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=33.0
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEE-cCCc--EEEecEEEEecCCCC
Q 011888 14 EIILNESNVIDFKDHGDKVSVVL-ENGQ--CYAGDLLIGADGIWS 55 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~-~dG~--~~~adlvVGADG~~S 55 (475)
..++.+++++.++.+++.|++.. .+|+ ++++|.||-|-|...
T Consensus 71 v~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p 115 (447)
T 1nhp_A 71 VNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVP 115 (447)
T ss_dssp CEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred CEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCc
Confidence 36778999999988788777765 3465 489999999999654
No 244
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=26.79 E-value=39 Score=23.80 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=17.3
Q ss_pred ceeeccCCCceeecCCCCcEEeCCCCEEEeC
Q 011888 413 GTYVTDNEGRRYRVSSNFPARFRPSDTIEFG 443 (475)
Q Consensus 413 Gt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g 443 (475)
-..|||+ .++.. ..|++||.|.|=
T Consensus 48 ~v~vNg~-----~v~~~--~~L~~gD~V~i~ 71 (77)
T 2q5w_D 48 QVAVNEE-----FVQKS--DFIQPNDTVALI 71 (77)
T ss_dssp EEEETTE-----EECTT--SEECTTCEEEEE
T ss_pred EEEECCE-----ECCCC--CCcCCCCEEEEE
Confidence 3667776 66543 689999999873
No 245
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=26.60 E-value=83 Score=28.88 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=31.1
Q ss_pred eEEcCcEEEEEEeeCC--eE-EEEEc---CC--cEEEecEEEEecCCCCc
Q 011888 15 IILNESNVIDFKDHGD--KV-SVVLE---NG--QCYAGDLLIGADGIWSK 56 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~--~v-~v~~~---dG--~~~~adlvVGADG~~S~ 56 (475)
.+++++++++++.+++ ++ .|.+. +| +++.+|+||-|-|....
T Consensus 211 ~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 260 (333)
T 1vdc_A 211 DVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPA 260 (333)
T ss_dssp EEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEES
T ss_pred eEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccc
Confidence 6889999999987664 43 25554 45 47899999999886543
No 246
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=25.81 E-value=63 Score=31.43 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=28.0
Q ss_pred CcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCC
Q 011888 19 ESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW 54 (475)
Q Consensus 19 ~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~ 54 (475)
..+|++|+.+.. +|++++|+++.+|+||-|=|+.
T Consensus 75 ~~~v~~Id~~~~--~V~~~~g~~i~YD~LViAtG~~ 108 (430)
T 3hyw_A 75 NEKAESIDPDAN--TVTTQSGKKIEYDYLVIATGPK 108 (430)
T ss_dssp CSCEEEEETTTT--EEEETTCCEEECSEEEECCCCE
T ss_pred EeEEEEEECCCC--EEEECCCCEEECCEEEEeCCCC
Confidence 347888887666 5678899999999999999975
No 247
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=25.58 E-value=43 Score=23.51 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=17.3
Q ss_pred eeeccCCCceeecCCCCcEEeCCCCEEEeCC
Q 011888 414 TYVTDNEGRRYRVSSNFPARFRPSDTIEFGS 444 (475)
Q Consensus 414 t~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~ 444 (475)
..||+. .+. +....|++||.|.|=.
T Consensus 45 vavN~~-----~v~-~~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 45 IALNDH-----LID-NLNTPLKDGDVISLLP 69 (74)
T ss_dssp EEESSS-----EEC-CTTCCCCTTCEEEEEC
T ss_pred EEECCE-----EcC-CCCcCCCCCCEEEEEC
Confidence 567776 543 3457899999998743
No 248
>2co3_A SAFA pilus subunit; adhesion, pathogenesis, fibril protein, fold complementation; 1.78A {Salmonella typhimurium} SCOP: b.2.3.2 PDB: 3cre_B 3crf_B 2co7_A 3cre_A 3crf_A 2cnz_A 2cny_A 2co1_A 2co2_A 2co4_A 2co6_A
Probab=25.34 E-value=41 Score=26.71 Aligned_cols=37 Identities=5% Similarity=0.122 Sum_probs=30.3
Q ss_pred eeeCCccccccceEEEEECCeEEEEEcCCccceeecc
Q 011888 382 IVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTD 418 (475)
Q Consensus 382 i~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn~ 418 (475)
+.+....+++.|+...+.+.+|++.|.+++-...+-|
T Consensus 80 V~fs~~~~~~~~~~~~~ng~~W~tfdtnd~l~i~l~G 116 (137)
T 2co3_A 80 VGLSSDSLRRSDSTEKWNGVNWMTFNSNDTLDIVLTG 116 (137)
T ss_dssp EEECHHHHTTCCEEEEETTEEEEEEESSEEEEEEECS
T ss_pred EEEecccccCCCCccccCCceEEEEecCCcEEEEEec
Confidence 5667789999999889999999999987666655544
No 249
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=25.30 E-value=18 Score=25.76 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=18.1
Q ss_pred ceeeccCCCceeecCCCC--cEEeCCCCEEEeC
Q 011888 413 GTYVTDNEGRRYRVSSNF--PARFRPSDTIEFG 443 (475)
Q Consensus 413 Gt~vn~~~~~~~~~~~~~--~~~l~~gd~i~~g 443 (475)
-+.+||. -+++.. ...|++||.|.+=
T Consensus 32 AV~vNg~-----iVpr~~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 32 AVALNYD-----VVPRGKWDETPVTAGDEIEIL 59 (73)
T ss_dssp EEEESSS-----EECHHHHTTCBCCTTCEEEEE
T ss_pred EEEECCE-----ECChHHcCcccCCCCCEEEEE
Confidence 3567777 555432 4689999999874
No 250
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=25.23 E-value=90 Score=27.89 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=28.4
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCC
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW 54 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~ 54 (475)
.++. +++++++.++ .|+++||+++.+|+||-|=|..
T Consensus 190 ~i~~-~~v~~i~~~~---~v~~~~g~~~~~D~vi~a~G~~ 225 (297)
T 3fbs_A 190 RVET-TRIREIAGHA---DVVLADGRSIALAGLFTQPKLR 225 (297)
T ss_dssp EEEC-SCEEEEETTE---EEEETTSCEEEESEEEECCEEE
T ss_pred EEEc-ceeeeeecCC---eEEeCCCCEEEEEEEEEccCcc
Confidence 5664 8898886533 6788999999999999888754
No 251
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=25.14 E-value=61 Score=31.43 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=30.3
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCc
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 56 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 56 (475)
.++. .+++.++.+.. +|++++|+++.+|.||.|.|....
T Consensus 72 ~~~~-~~v~~id~~~~--~v~~~~g~~i~~d~liiAtG~~~~ 110 (430)
T 3h28_A 72 EFIN-EKAESIDPDAN--TVTTQSGKKIEYDYLVIATGPKLV 110 (430)
T ss_dssp EEEC-SCEEEEETTTT--EEEETTCCEEECSEEEECCCCEEE
T ss_pred EEEE-EEEEEEECCCC--EEEECCCcEEECCEEEEcCCcccc
Confidence 3444 58888876655 567788989999999999998744
No 252
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=24.96 E-value=80 Score=28.08 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=28.4
Q ss_pred CCCEEecCCCCCCCCCceeeeCCccccccceEEEEEC-CeEEE
Q 011888 364 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKD-GAFYL 405 (475)
Q Consensus 364 ~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~-~~~~i 405 (475)
...++||....++ |.+++. ..|.+|.+++ +.|.+
T Consensus 20 ~~~~tiG~~~~~~-----itl~~~---~~~i~l~~~~~~~~~v 54 (238)
T 1wv3_A 20 GKTYTISEDERAD-----ITLKSL---GEVIHLEQNNQGTWQA 54 (238)
T ss_dssp TCCEEEESCTTSS-----EECTTC---CCCEEEEECTTSCEEE
T ss_pred CcEEEECCCccce-----EEecCC---CccEEEEEccCCeEEE
Confidence 4669999999998 888776 8889999987 77876
No 253
>3mml_A Allophanate hydrolase subunit 2; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=24.78 E-value=1e+02 Score=28.78 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=26.7
Q ss_pred CCccceeeccCCCceeecCCCCcEEeCCCCEEEeCCC
Q 011888 409 QSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 445 (475)
Q Consensus 409 ~S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 445 (475)
|..-...|||+ +++....+.++.||+++||..
T Consensus 78 GA~~~~~ldg~-----~v~~~~~~~v~~G~~L~~g~~ 109 (318)
T 3mml_A 78 GADTDPAVNGI-----PFGTNSIHHVHDGQVISLGAP 109 (318)
T ss_dssp ESCCCCEETTE-----ECCTTSCEEECTTCEEECCCC
T ss_pred CCCCcceECCE-----EcCCCeEEEECCCCEEEeCCC
Confidence 44455668998 898888999999999999985
No 254
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=24.41 E-value=45 Score=23.21 Aligned_cols=23 Identities=17% Similarity=-0.006 Sum_probs=16.2
Q ss_pred eeeccCCCceeecCCCCcEEeCCCCEEEeC
Q 011888 414 TYVTDNEGRRYRVSSNFPARFRPSDTIEFG 443 (475)
Q Consensus 414 t~vn~~~~~~~~~~~~~~~~l~~gd~i~~g 443 (475)
..+|+. .+++.. .|++||.|.|=
T Consensus 42 vavN~~-----~v~~~~--~L~~gD~V~ii 64 (70)
T 1ryj_A 42 VKKNGQ-----IVIDEE--EIFDGDIIEVI 64 (70)
T ss_dssp EEETTE-----ECCTTS--BCCTTCEEEEE
T ss_pred EEECCE-----ECCCcc--cCCCCCEEEEE
Confidence 456776 555443 79999999763
No 255
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=24.40 E-value=27 Score=27.26 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=18.6
Q ss_pred eeeccCCCceeecCCCCcEEeCCCCEEEeC
Q 011888 414 TYVTDNEGRRYRVSSNFPARFRPSDTIEFG 443 (475)
Q Consensus 414 t~vn~~~~~~~~~~~~~~~~l~~gd~i~~g 443 (475)
.+||+.. |++..+-.++|++||.|.|=
T Consensus 76 VlVN~~d---i~~l~gldt~L~dGDeV~ii 102 (114)
T 1wgk_A 76 VLINDAD---WELLGELDYQLQDQDSILFI 102 (114)
T ss_dssp EEESSSB---HHHHCTTTCBCCSSEEEEEE
T ss_pred EEECCee---eeccCCcCcCCCCCCEEEEe
Confidence 6788861 12224557899999999883
No 256
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=24.33 E-value=33 Score=25.82 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=19.9
Q ss_pred CccceeeccCCCceeecC--CCCcEEeCCCCEEEeCC
Q 011888 410 SEHGTYVTDNEGRRYRVS--SNFPARFRPSDTIEFGS 444 (475)
Q Consensus 410 S~nGt~vn~~~~~~~~~~--~~~~~~l~~gd~i~~g~ 444 (475)
|.+-..|||+ .+. .+....|++||.|.|=.
T Consensus 63 ~~~~v~VNg~-----~v~~~~~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 63 GSINILINGN-----NIRHLEGLETLLKDSDEIGILP 94 (99)
T ss_dssp SSCEEEETTS-----CGGGTTSTTSCCCTTEEEEEEC
T ss_pred cccEEEECCE-----EccccCCCCCCCCCCCEEEEEC
Confidence 3345778887 442 13456899999998743
No 257
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=24.03 E-value=81 Score=21.68 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=23.1
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcE
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQC 41 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~ 41 (475)
....+..+++++...+.-.+|.|.||++
T Consensus 23 d~~yYparI~Si~s~~~~Y~V~fKdgT~ 50 (66)
T 2l8d_A 23 SVLYYEVQVTSYDDASHLYTVKYKDGTE 50 (66)
T ss_dssp SSCEEEEEEEEEETTTTEEEEEETTSCE
T ss_pred CccceEEEEEEeccCCceEEEEecCCCE
Confidence 3567889999999777788999999864
No 258
>1ok0_A Tendamistat, alpha-amylase inhibitor HOE-467A; 0.93A {Streptomyces tendae} SCOP: b.5.1.1 PDB: 1bvn_T 1hoe_A 2ait_A 3ait_A 4ait_A
Probab=23.94 E-value=1.8e+02 Score=20.18 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=29.5
Q ss_pred cceEEEEECCeEEEEEcCCccce--ee---ccCCCceeecCCCCcEEeCCCCEEEeCCC
Q 011888 392 MHARISYKDGAFYLIDLQSEHGT--YV---TDNEGRRYRVSSNFPARFRPSDTIEFGSD 445 (475)
Q Consensus 392 ~Ha~i~~~~~~~~i~D~~S~nGt--~v---n~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 445 (475)
.-|+-...+++|.-.+++=.... .| ||. -.+ ...+.||+.++||+.
T Consensus 9 PaCV~~~qsWRYT~V~N~Cs~tvsVtV~Y~dG~-----~~P---Crv~~PG~~~Tfg~g 59 (74)
T 1ok0_A 9 PSCVTLYQSWRYSQADNGCAETVTVKVVYEDDT-----EGL---CYAVAPGQITTVGDG 59 (74)
T ss_dssp CTTEEEEECSSEEEEEECSSSCEEEEEEETTSC-----BCC---CEEECTTCEEEEEEC
T ss_pred cccEEEecceEEEeecCCCcccEEEEEEEeCCC-----cce---eEEeCCCceEEeccc
Confidence 34555667777777665533332 22 555 232 568999999999974
No 259
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=23.85 E-value=71 Score=30.77 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=32.2
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCC
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW 54 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~ 54 (475)
.++.+++|+.++.+.. +|++.+|+++.+|.||-|-|..
T Consensus 73 ~~~~~~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~ 110 (410)
T 3ef6_A 73 DMLTGPEVTALDVQTR--TISLDDGTTLSADAIVIATGSR 110 (410)
T ss_dssp EEEESCCEEEEETTTT--EEEETTSCEEECSEEEECCCEE
T ss_pred EEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEccCCc
Confidence 6888999999986655 5677899999999999999965
No 260
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=23.79 E-value=1e+02 Score=28.13 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=31.2
Q ss_pred CeEEcCcEEEEEEeeCCeE-EEEEc---CCc--EEEecEEEEecCCCCc
Q 011888 14 EIILNESNVIDFKDHGDKV-SVVLE---NGQ--CYAGDLLIGADGIWSK 56 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v-~v~~~---dG~--~~~adlvVGADG~~S~ 56 (475)
..++++++++++..+++.+ .|.+. +|+ ++.+|.||-|-|....
T Consensus 205 v~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 253 (319)
T 3cty_A 205 IPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQ 253 (319)
T ss_dssp CCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEEC
T ss_pred cEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccC
Confidence 3688999999998765422 35554 675 6899999998886543
No 261
>3nk4_C ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_C*
Probab=22.48 E-value=38 Score=18.47 Aligned_cols=12 Identities=42% Similarity=0.708 Sum_probs=7.6
Q ss_pred CCcEEEecEEEE
Q 011888 38 NGQCYAGDLLIG 49 (475)
Q Consensus 38 dG~~~~adlvVG 49 (475)
.|+++.+|+|||
T Consensus 6 agkevaadvvig 17 (30)
T 3nk4_C 6 AGKEVAADVVIG 17 (30)
T ss_dssp ---CEEEEEEEE
T ss_pred cccceecceEEe
Confidence 367788888887
No 262
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=22.38 E-value=52 Score=32.97 Aligned_cols=40 Identities=18% Similarity=0.087 Sum_probs=29.0
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCc----EEEecEEEEecCC
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQ----CYAGDLLIGADGI 53 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~----~~~adlvVGADG~ 53 (475)
.+++.+++|++++.+.-.+.+...||+ ++.+|+||-|=|.
T Consensus 287 V~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv 330 (502)
T 4g6h_A 287 IKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGN 330 (502)
T ss_dssp CEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCE
T ss_pred eeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCC
Confidence 379999999998643333344556764 6899999988885
No 263
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=21.78 E-value=65 Score=31.48 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=30.1
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCC
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW 54 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~ 54 (475)
..++.+++|++++ ++ .+++++|+++.+|+||-|=|..
T Consensus 203 V~i~~~~~v~~~~--~~--~v~~~~g~~~~~D~vl~a~G~~ 239 (437)
T 4eqs_A 203 IPYRLNEEINAIN--GN--EITFKSGKVEHYDMIIEGVGTH 239 (437)
T ss_dssp CCEEESCCEEEEE--TT--EEEETTSCEEECSEEEECCCEE
T ss_pred eEEEeccEEEEec--CC--eeeecCCeEEeeeeEEEEecee
Confidence 3688999998875 33 4678899999999999998864
No 264
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=21.07 E-value=86 Score=30.14 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=31.6
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCC
Q 011888 15 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW 54 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~ 54 (475)
.++.+++++.++.+.. +|++.+|+++.+|.||-|-|..
T Consensus 81 ~~~~~~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~ 118 (415)
T 3lxd_A 81 EMKLGAEVVSLDPAAH--TVKLGDGSAIEYGKLIWATGGD 118 (415)
T ss_dssp EEEETCCEEEEETTTT--EEEETTSCEEEEEEEEECCCEE
T ss_pred EEEeCCEEEEEECCCC--EEEECCCCEEEeeEEEEccCCc
Confidence 5788899999976655 5667889999999999999954
No 265
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=21.04 E-value=48 Score=24.08 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=17.2
Q ss_pred eeeccCCCceeecC--CCCcEEeCCCCEEEeC
Q 011888 414 TYVTDNEGRRYRVS--SNFPARFRPSDTIEFG 443 (475)
Q Consensus 414 t~vn~~~~~~~~~~--~~~~~~l~~gd~i~~g 443 (475)
..|||. .+. .+....|++||.|.|=
T Consensus 58 v~vN~~-----~v~~~~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 58 ILVNGN-----NITSMKGLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEESSS-----BGGGTCSSSCBCCTTCEEEEE
T ss_pred EEECCE-----EccccCCCCcCCCCCCEEEEe
Confidence 667776 443 1345689999999874
No 266
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=20.99 E-value=49 Score=32.18 Aligned_cols=39 Identities=13% Similarity=-0.062 Sum_probs=28.0
Q ss_pred CeEEcCcEEEEEEeeCCeEEEEEcC--CcEEEecEEEEecCCC
Q 011888 14 EIILNESNVIDFKDHGDKVSVVLEN--GQCYAGDLLIGADGIW 54 (475)
Q Consensus 14 ~~i~~~~~v~~v~~~~~~v~v~~~d--G~~~~adlvVGADG~~ 54 (475)
.+++++++|++|+. +++++...+ |+++.+|+||-|=|..
T Consensus 215 V~i~~~~~v~~v~~--~~v~~~~~~~~g~~i~~D~vv~a~G~~ 255 (430)
T 3h28_A 215 IDWIANVAVKAIEP--DKVIYEDLNGNTHEVPAKFTMFMPSFQ 255 (430)
T ss_dssp CEEECSCEEEEECS--SEEEEECTTSCEEEEECSEEEEECEEE
T ss_pred CEEEeCCEEEEEeC--CeEEEEecCCCceEEeeeEEEECCCCc
Confidence 47899999999854 444443211 6789999999987754
No 267
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=20.77 E-value=34 Score=25.22 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=16.2
Q ss_pred eeeccCCCceeecCCCC--cEEeCCCCEEEeC
Q 011888 414 TYVTDNEGRRYRVSSNF--PARFRPSDTIEFG 443 (475)
Q Consensus 414 t~vn~~~~~~~~~~~~~--~~~l~~gd~i~~g 443 (475)
+.||+. .+++.. ...|++||.|.|=
T Consensus 55 VavNg~-----iV~~~~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 55 VERNKE-----IIGKERYHEVELCDRDVIEIV 81 (87)
T ss_dssp EEETTE-----EECGGGTTTSBCCSSSEEEEE
T ss_pred EEECCE-----ECChhhcCCcCCCCCCEEEEE
Confidence 456665 444322 3679999999863
No 268
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=20.40 E-value=48 Score=24.12 Aligned_cols=26 Identities=4% Similarity=-0.042 Sum_probs=18.3
Q ss_pred cceeeccCCCceeecCCCCcEEeCCCCEEEeCC
Q 011888 412 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGS 444 (475)
Q Consensus 412 nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~ 444 (475)
--.+||++ .+.. ...|++||.|.|=.
T Consensus 59 ~~v~VN~~-----~v~~--~~~l~~gDeV~i~P 84 (89)
T 3po0_A 59 INVLRNGE-----AAAL--GEATAAGDELALFP 84 (89)
T ss_dssp SEEEETTE-----ECCT--TSBCCTTCEEEEEC
T ss_pred EEEEECCE-----ECCC--CcccCCCCEEEEEC
Confidence 34667887 5554 45799999998743
No 269
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=20.38 E-value=90 Score=30.45 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=33.2
Q ss_pred eEEcCcEEEEEEeeCCeEEEEEc-CCcEEEecEEEEecCCCC
Q 011888 15 IILNESNVIDFKDHGDKVSVVLE-NGQCYAGDLLIGADGIWS 55 (475)
Q Consensus 15 ~i~~~~~v~~v~~~~~~v~v~~~-dG~~~~adlvVGADG~~S 55 (475)
.++.+++|++++.+...++++.. +++++++|.||-|-|...
T Consensus 74 ~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p 115 (452)
T 3oc4_A 74 QLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQ 115 (452)
T ss_dssp EEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCB
T ss_pred EEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCccc
Confidence 57789999999988888877633 456899999999999844
No 270
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=20.16 E-value=1.2e+02 Score=21.46 Aligned_cols=25 Identities=32% Similarity=0.524 Sum_probs=19.6
Q ss_pred CCeEEEEEcCCcEEEecEEEEecCCC
Q 011888 29 GDKVSVVLENGQCYAGDLLIGADGIW 54 (475)
Q Consensus 29 ~~~v~v~~~dG~~~~adlvVGADG~~ 54 (475)
+..|+|.+.+|+++++.| +++|+--
T Consensus 15 g~~V~VeLk~g~~~~G~L-~~~D~~M 39 (75)
T 1d3b_A 15 GHIVTCETNTGEVYRGKL-IEAEDNM 39 (75)
T ss_dssp TSEEEEEETTSCEEEEEE-EEECTTC
T ss_pred CCEEEEEECCCcEEEEEE-EEEccce
Confidence 456889999999988855 7888743
Done!