Query 011891
Match_columns 475
No_of_seqs 436 out of 3756
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:22:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 5.5E-42 1.2E-46 389.0 33.3 404 1-449 618-1100(1153)
2 PLN00113 leucine-rich repeat r 99.9 3.5E-21 7.5E-26 217.9 17.2 205 11-217 87-295 (968)
3 PLN00113 leucine-rich repeat r 99.9 3.3E-21 7.1E-26 218.1 16.9 213 8-222 155-372 (968)
4 PLN03210 Resistant to P. syrin 99.8 1.1E-19 2.4E-24 207.2 25.2 253 4-266 599-909 (1153)
5 KOG0444 Cytoskeletal regulator 99.8 5.9E-23 1.3E-27 205.2 -3.2 241 1-247 110-382 (1255)
6 KOG0444 Cytoskeletal regulator 99.8 5.4E-22 1.2E-26 198.4 -2.2 201 12-217 98-302 (1255)
7 KOG0472 Leucine-rich repeat pr 99.7 8.7E-21 1.9E-25 181.3 -11.2 236 1-245 52-292 (565)
8 KOG4194 Membrane glycoprotein 99.7 4.7E-18 1E-22 169.4 2.8 199 43-244 173-408 (873)
9 KOG0472 Leucine-rich repeat pr 99.7 9E-20 1.9E-24 174.4 -9.9 214 2-223 76-291 (565)
10 KOG0617 Ras suppressor protein 99.7 5.1E-19 1.1E-23 151.2 -4.7 175 59-238 26-201 (264)
11 KOG4194 Membrane glycoprotein 99.7 9.4E-18 2E-22 167.3 3.1 233 1-237 156-426 (873)
12 KOG0617 Ras suppressor protein 99.7 2.7E-18 5.9E-23 146.8 -3.7 168 35-205 25-195 (264)
13 PRK15370 E3 ubiquitin-protein 99.6 6.6E-16 1.4E-20 166.3 11.8 219 1-245 185-405 (754)
14 PRK15370 E3 ubiquitin-protein 99.6 5.4E-16 1.2E-20 167.0 11.0 204 18-245 179-384 (754)
15 PRK15387 E3 ubiquitin-protein 99.6 2.7E-15 5.8E-20 160.9 15.0 215 1-245 208-439 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 2.1E-15 4.5E-20 161.8 12.9 207 1-238 229-456 (788)
17 KOG0618 Serine/threonine phosp 99.5 2.9E-16 6.2E-21 164.3 -4.5 214 18-239 242-488 (1081)
18 KOG0618 Serine/threonine phosp 99.4 9.1E-15 2E-19 153.3 -2.1 230 2-236 6-319 (1081)
19 cd00116 LRR_RI Leucine-rich re 99.4 9.2E-14 2E-18 137.2 1.2 224 12-237 18-288 (319)
20 cd00116 LRR_RI Leucine-rich re 99.4 1.2E-13 2.7E-18 136.3 1.3 217 21-238 2-261 (319)
21 KOG4658 Apoptotic ATPase [Sign 99.3 1.3E-12 2.8E-17 143.2 3.8 238 4-245 533-788 (889)
22 KOG4237 Extracellular matrix p 99.2 6.5E-13 1.4E-17 127.6 -1.3 71 156-226 270-342 (498)
23 KOG0532 Leucine-rich repeat (L 99.2 2.7E-13 5.9E-18 135.6 -4.5 166 46-216 78-244 (722)
24 KOG4237 Extracellular matrix p 99.2 4.3E-13 9.4E-18 128.8 -4.5 215 1-217 74-357 (498)
25 COG4886 Leucine-rich repeat (L 99.2 1.2E-11 2.7E-16 126.0 5.2 179 39-221 112-292 (394)
26 KOG0532 Leucine-rich repeat (L 99.2 1.8E-12 3.9E-17 129.8 -3.2 207 3-217 59-271 (722)
27 COG4886 Leucine-rich repeat (L 99.1 4.8E-11 1E-15 121.6 5.5 193 10-209 109-303 (394)
28 KOG4658 Apoptotic ATPase [Sign 99.1 1.6E-10 3.5E-15 126.8 6.4 152 40-192 520-677 (889)
29 KOG3207 Beta-tubulin folding c 99.0 4.2E-11 9.1E-16 116.7 -0.2 201 15-216 119-336 (505)
30 KOG3207 Beta-tubulin folding c 99.0 7.8E-11 1.7E-15 114.9 0.2 184 12-196 141-339 (505)
31 KOG1259 Nischarin, modulator o 98.9 2.2E-10 4.7E-15 106.8 0.5 172 40-216 211-409 (490)
32 PF14580 LRR_9: Leucine-rich r 98.9 1.3E-09 2.8E-14 97.0 5.0 56 159-214 87-148 (175)
33 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.3E-14 97.5 3.0 115 5-126 8-126 (175)
34 PRK15386 type III secretion pr 98.8 1E-08 2.2E-13 102.0 9.0 163 85-266 48-216 (426)
35 KOG1259 Nischarin, modulator o 98.8 7.4E-10 1.6E-14 103.3 -1.5 184 9-200 206-416 (490)
36 PRK15386 type III secretion pr 98.7 5.7E-08 1.2E-12 96.8 8.4 64 39-107 48-112 (426)
37 KOG1909 Ran GTPase-activating 98.6 1E-08 2.3E-13 97.7 0.5 87 13-100 26-131 (382)
38 PLN03150 hypothetical protein; 98.6 1.5E-07 3.3E-12 101.2 8.3 105 115-219 420-528 (623)
39 KOG4341 F-box protein containi 98.5 1.6E-09 3.4E-14 105.4 -7.6 108 134-241 292-415 (483)
40 KOG0531 Protein phosphatase 1, 98.5 1.8E-08 3.8E-13 103.4 -1.6 171 39-216 91-265 (414)
41 KOG1909 Ran GTPase-activating 98.5 1.2E-08 2.6E-13 97.3 -2.6 206 9-217 50-309 (382)
42 PLN03150 hypothetical protein; 98.5 3.6E-07 7.7E-12 98.3 7.9 106 67-172 419-527 (623)
43 PF13855 LRR_8: Leucine rich r 98.3 3.7E-07 8.1E-12 66.6 2.8 58 160-217 1-60 (61)
44 KOG2120 SCF ubiquitin ligase, 98.2 1.8E-08 3.9E-13 94.1 -6.9 151 67-217 186-349 (419)
45 PF13855 LRR_8: Leucine rich r 98.2 1.4E-06 3E-11 63.6 4.0 56 67-123 2-59 (61)
46 KOG2120 SCF ubiquitin ligase, 98.2 1.3E-08 2.7E-13 95.2 -8.5 173 44-217 186-374 (419)
47 KOG0531 Protein phosphatase 1, 98.2 2.6E-07 5.5E-12 94.9 -1.1 169 42-217 71-243 (414)
48 KOG4341 F-box protein containi 98.2 4E-08 8.8E-13 95.8 -6.7 229 8-243 155-431 (483)
49 KOG1859 Leucine-rich repeat pr 98.1 1.1E-07 2.5E-12 98.3 -5.4 16 39-54 105-120 (1096)
50 KOG1859 Leucine-rich repeat pr 98.1 5.6E-08 1.2E-12 100.6 -7.7 176 11-196 103-292 (1096)
51 PF12799 LRR_4: Leucine Rich r 98.0 9.6E-06 2.1E-10 54.7 4.6 40 160-199 1-40 (44)
52 KOG2982 Uncharacterized conser 98.0 2E-06 4.4E-11 80.7 0.9 160 64-223 69-266 (418)
53 KOG3665 ZYG-1-like serine/thre 97.8 8.9E-06 1.9E-10 87.7 2.8 109 64-174 146-264 (699)
54 KOG3665 ZYG-1-like serine/thre 97.8 4.2E-06 9.1E-11 90.2 0.1 151 65-216 121-285 (699)
55 PF12799 LRR_4: Leucine Rich r 97.7 3.2E-05 6.8E-10 52.2 2.7 41 183-224 1-41 (44)
56 KOG2982 Uncharacterized conser 97.6 1.4E-05 3.1E-10 75.1 0.3 109 65-173 44-159 (418)
57 KOG4579 Leucine-rich repeat (L 97.5 3.7E-06 8E-11 70.3 -4.1 111 18-131 28-141 (177)
58 KOG4579 Leucine-rich repeat (L 97.4 1.6E-05 3.4E-10 66.5 -1.8 59 158-216 75-133 (177)
59 KOG1947 Leucine rich repeat pr 97.3 2.7E-05 5.8E-10 81.2 -2.2 108 42-149 187-308 (482)
60 COG5238 RNA1 Ran GTPase-activa 97.2 0.00012 2.6E-09 68.2 1.6 39 87-125 90-132 (388)
61 KOG1947 Leucine rich repeat pr 97.1 9.9E-05 2.1E-09 76.9 -0.2 111 15-125 186-307 (482)
62 KOG1644 U2-associated snRNP A' 97.0 0.0013 2.8E-08 58.9 5.8 36 158-193 111-150 (233)
63 KOG1644 U2-associated snRNP A' 97.0 0.0014 2.9E-08 58.8 5.6 54 44-98 43-97 (233)
64 COG5238 RNA1 Ran GTPase-activa 96.8 0.00047 1E-08 64.3 1.1 154 64-217 28-225 (388)
65 KOG2123 Uncharacterized conser 96.6 0.00023 5E-09 66.6 -2.5 83 135-220 18-102 (388)
66 KOG2123 Uncharacterized conser 96.4 0.00017 3.7E-09 67.4 -4.6 99 16-119 18-123 (388)
67 KOG2739 Leucine-rich acidic nu 96.3 0.0036 7.9E-08 58.3 3.7 82 158-241 63-157 (260)
68 KOG2739 Leucine-rich acidic nu 95.7 0.01 2.3E-07 55.3 3.6 86 135-220 64-157 (260)
69 PF00560 LRR_1: Leucine Rich R 95.1 0.0086 1.9E-07 33.6 0.7 18 185-202 2-19 (22)
70 PF13306 LRR_5: Leucine rich r 94.9 0.075 1.6E-06 44.4 6.3 79 13-97 8-89 (129)
71 PF13306 LRR_5: Leucine rich r 94.5 0.15 3.3E-06 42.5 7.3 101 38-145 7-112 (129)
72 PF00560 LRR_1: Leucine Rich R 94.4 0.015 3.3E-07 32.6 0.6 17 68-84 2-18 (22)
73 PF07725 LRR_3: Leucine Rich R 94.2 0.018 3.8E-07 31.3 0.6 14 1-14 7-20 (20)
74 PF13504 LRR_7: Leucine rich r 93.8 0.042 9.1E-07 28.7 1.5 13 185-197 3-15 (17)
75 PF13504 LRR_7: Leucine rich r 93.3 0.068 1.5E-06 27.9 1.7 17 160-176 1-17 (17)
76 KOG3864 Uncharacterized conser 90.0 0.044 9.6E-07 49.3 -2.0 81 17-99 101-186 (221)
77 KOG3864 Uncharacterized conser 89.6 0.051 1.1E-06 48.9 -1.9 37 181-217 149-187 (221)
78 KOG4308 LRR-containing protein 89.0 0.0043 9.3E-08 64.4 -10.6 34 183-216 262-300 (478)
79 smart00370 LRR Leucine-rich re 88.9 0.36 7.8E-06 28.0 2.0 20 182-201 1-20 (26)
80 smart00369 LRR_TYP Leucine-ric 88.9 0.36 7.8E-06 28.0 2.0 20 182-201 1-20 (26)
81 smart00369 LRR_TYP Leucine-ric 85.6 0.62 1.4E-05 27.0 1.7 20 65-84 1-20 (26)
82 smart00370 LRR Leucine-rich re 85.6 0.62 1.4E-05 27.0 1.7 20 65-84 1-20 (26)
83 KOG0473 Leucine-rich repeat pr 83.0 0.032 6.8E-07 51.3 -6.8 84 134-218 40-123 (326)
84 KOG0473 Leucine-rich repeat pr 79.4 0.051 1.1E-06 50.0 -6.8 80 62-142 38-117 (326)
85 smart00364 LRR_BAC Leucine-ric 75.7 1.7 3.7E-05 25.4 1.2 18 183-200 2-19 (26)
86 smart00367 LRR_CC Leucine-rich 74.8 2.1 4.5E-05 24.8 1.5 16 17-32 2-17 (26)
87 KOG4308 LRR-containing protein 73.1 0.068 1.5E-06 55.6 -8.9 152 68-219 89-275 (478)
88 smart00365 LRR_SD22 Leucine-ri 63.1 5.3 0.00012 23.4 1.5 17 182-198 1-17 (26)
89 PF13516 LRR_6: Leucine Rich r 59.3 5.4 0.00012 22.4 1.0 14 183-196 2-15 (24)
90 smart00368 LRR_RI Leucine rich 40.8 20 0.00044 21.1 1.5 13 161-173 3-15 (28)
91 KOG3763 mRNA export factor TAP 39.0 11 0.00025 39.3 0.4 61 158-219 216-283 (585)
92 KOG3763 mRNA export factor TAP 28.5 24 0.00052 37.0 0.7 76 136-212 218-307 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.5e-42 Score=388.97 Aligned_cols=404 Identities=26% Similarity=0.373 Sum_probs=290.1
Q ss_pred CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEcccc-CC
Q 011891 1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGT-AI 78 (475)
Q Consensus 1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~-~i 78 (475)
|++|+|+++|++++.+++|+.|+|++|..++.+|+ ++.+++|+.|+|++|..+..+|. +..+++|+.|++++| .+
T Consensus 618 L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 618 MQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred CcCccccccccccccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence 57899999999999999999999999999999986 56789999999999999999998 889999999999986 67
Q ss_pred cccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc--------------------------------
Q 011891 79 EELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-------------------------------- 126 (475)
Q Consensus 79 ~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-------------------------------- 126 (475)
+.+|..+ ++++|++|++++|..+..+|.. ..+|++|++++|.++
T Consensus 695 ~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~ 770 (1153)
T PLN03210 695 EILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLT 770 (1153)
T ss_pred CccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccc
Confidence 7888866 7899999999999877776643 223444444444433
Q ss_pred ----------------------cCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCC-CCcchhhCCCC
Q 011891 127 ----------------------ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAI-TELPESLGLLS 183 (475)
Q Consensus 127 ----------------------~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l-~~lp~~l~~l~ 183 (475)
++|.+++++++|+.|++++|..++.+|... ++++|+.|++++|.. ..+|. ..+
T Consensus 771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~ 846 (1153)
T PLN03210 771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---IST 846 (1153)
T ss_pred hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---ccc
Confidence 455555556666666666666666555443 456666666666532 23443 245
Q ss_pred CCceeEeccCCccccchHHhhcCCcccccccccccccccCCCc---cCcceecccccccCccccCCCCCc----------
Q 011891 184 SLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLP---CNLYWLDAQHCTTLESLSGLFSSY---------- 250 (475)
Q Consensus 184 ~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l~---~~L~~L~i~~c~~L~~l~~~~~~~---------- 250 (475)
+|+.|+|++|.++.+|.++..+++|+.|++++|+.++.+|..+ .+|+.+++.+|.+|+.++......
T Consensus 847 nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~ 926 (1153)
T PLN03210 847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIH 926 (1153)
T ss_pred ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhccccc
Confidence 7888888888999999999999999999999999999998654 567788999999998775431110
Q ss_pred ----ceeEEEecCCccchHHHHHhHHHHHHHHHHHHHHHHHHHhhccCcCccceEEEecCCCCCccccccCCCceEE-EE
Q 011891 251 ----KCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSIT-LK 325 (475)
Q Consensus 251 ----~~~~l~~~~c~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~sv~-~~ 325 (475)
....+.|.+|+++++.+.. +. + .....+++||.++|+||.||+.|++++ |.
T Consensus 927 ~~~p~~~~l~f~nC~~L~~~a~l------~~-------------~-----~~~~~~~l~g~evp~~f~hr~~g~sl~~i~ 982 (1153)
T PLN03210 927 SKLPSTVCINFINCFNLDQEALL------QQ-------------Q-----SIFKQLILSGEEVPSYFTHRTTGASLTNIP 982 (1153)
T ss_pred ccCCchhccccccccCCCchhhh------cc-------------c-----ccceEEECCCccCchhccCCcccceeeeec
Confidence 0123568899998876521 00 0 112367899999999999999999998 99
Q ss_pred cCCCCCCCCceeeEEEEEEEEeeCCC--CCCceeEEEEEEeecCCCCCcceeeeeeCCCCccCCCeEEEEeeeccccccC
Q 011891 326 MQPGCFSNNKVFGFVFCAIVAFRDHH--VRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLN 403 (475)
Q Consensus 326 lp~~~~~~~~~~gfa~c~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdh~~~~~~~~~~~~~~ 403 (475)
+|+.|+ ...|.||++|+|+++.... ...+.++|.|+|++..++..... ............+|+++ |.+..+..
T Consensus 983 l~~~~~-~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~---~~~~~~~~ 1057 (1153)
T PLN03210 983 LLHISP-CQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFDSP-YQPHVFSVTKKGSHLVI---FDCCFPLN 1057 (1153)
T ss_pred cCCccc-CCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCCccccC-CCceeEeeeccccceEE---eccccccc
Confidence 999998 7889999999999887732 23678899999998876653220 00000011233455555 33222221
Q ss_pred CCCC--CCcCCeeEEEEEEEecCCCCcccCceeEEEeccEEEecCCCC
Q 011891 404 GCWE--YNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSM 449 (475)
Q Consensus 404 ~~~~--~~~~~~~~~f~f~~~~~~~~~~~~~~~vk~cGv~l~~~~~~~ 449 (475)
.-.. ..+.+++|+++|+..... ..++||+|||+++|+.+..
T Consensus 1058 ~~~~~~~~~~~~~~~~~f~~~~~~-----~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1058 EDNAPLAELNYDHVDIQFRLTNKN-----SQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred ccccchhccCCceeeEEEEEecCC-----CCeEEEeeeEEEeccCCCc
Confidence 1111 113445688888766422 2379999999999965544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=3.5e-21 Score=217.94 Aligned_cols=205 Identities=29% Similarity=0.397 Sum_probs=96.7
Q ss_pred ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCc-ccCcccCCCC
Q 011891 11 ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIE-ELPSSIGCLS 89 (475)
Q Consensus 11 ~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~-~lp~~i~~l~ 89 (475)
..+..+++|+.|+|++|..-..+|. ..+.++++|++|+|++|...+.+|. +.+++|++|+|++|.+. .+|..+++++
T Consensus 87 ~~~~~l~~L~~L~Ls~n~~~~~ip~-~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 87 SAIFRLPYIQTINLSNNQLSGPIPD-DIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred hHHhCCCCCCEEECCCCccCCcCCh-HHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCC
Confidence 4455666666666666543334443 2233555556666555443333332 23445555555555444 3444445555
Q ss_pred CCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc-cCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEec
Q 011891 90 RLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLT 168 (475)
Q Consensus 90 ~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~ 168 (475)
+|++|++++|.....+|..++++++|++|++++|.+. .+|..+..+++|+.|++++|.....+|..++++++|+.|+++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 5555555554444444444444555555555544443 344444444444444444444433444444444444444444
Q ss_pred CCCCCC-cchhhCCCCCCceeEeccCCcc-ccchHHhhcCCcccccccccc
Q 011891 169 DCAITE-LPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 169 ~~~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~l~~c~ 217 (475)
+|+++. +|..++.+++|+.|++++|++. .+|..+..+++|+.|++++|.
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 444442 4444444444444444444442 334444444444444444443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=3.3e-21 Score=218.14 Aligned_cols=213 Identities=25% Similarity=0.326 Sum_probs=123.0
Q ss_pred cccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCc-ccCccc
Q 011891 8 QLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE-ELPSSI 85 (475)
Q Consensus 8 ~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~-~lp~~i 85 (475)
.+|..++.+++|++|+|++|.....+|. .+.++++|++|+|++|.....+|. ++.+++|++|++++|.+. .+|..+
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 232 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPN--SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232 (968)
T ss_pred cCChHHhcCCCCCEEECccCcccccCCh--hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH
Confidence 3445555666666666665544334442 345556666666666554445554 555666666666666555 455556
Q ss_pred CCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc-cCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCE
Q 011891 86 GCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTY 164 (475)
Q Consensus 86 ~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~ 164 (475)
+++++|++|++++|.....+|..++++++|++|++++|.+. .+|..+..+++|+.|++++|.....+|..+.++++|+.
T Consensus 233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 66666666666665555555655666666666666666554 45555556666666666666554455555555666666
Q ss_pred EEecCCCCCC-cchhhCCCCCCceeEeccCCcc-ccchHHhhcCCccccccccccccccc
Q 011891 165 LYLTDCAITE-LPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSL 222 (475)
Q Consensus 165 L~L~~~~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~l~~c~~l~~l 222 (475)
|++++|.+++ +|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|+....+
T Consensus 313 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred EECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence 6666665554 5555566666666666666654 45555666666666666655433333
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.1e-19 Score=207.21 Aligned_cols=253 Identities=30% Similarity=0.477 Sum_probs=170.7
Q ss_pred CCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEcccc-CCcccC
Q 011891 4 SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGT-AIEELP 82 (475)
Q Consensus 4 s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~-~i~~lp 82 (475)
+.++.+|..+ .+.+|+.|+|.+|. +..++. ++..+++|+.|+|++|..++.+|.++.+++|++|+|++| .+..+|
T Consensus 599 ~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~--~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp 674 (1153)
T PLN03210 599 YPLRCMPSNF-RPENLVKLQMQGSK-LEKLWD--GVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELP 674 (1153)
T ss_pred CCCCCCCCcC-CccCCcEEECcCcc-cccccc--ccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccc
Confidence 4455566555 35677888887753 555553 456788888888888888888888888888888888876 466788
Q ss_pred cccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcC-CccCCcccCCCCCcCEEEcCCCCCCCccccCC-----
Q 011891 83 SSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSA-IEELPSPIECLSALCVLDLGDCKSLKSLKLPF----- 156 (475)
Q Consensus 83 ~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~----- 156 (475)
.+++++++|+.|++++|..++.+|..+ ++++|+.|++++|. +..+|.. ..+|+.|+++++. +..+|..+
T Consensus 675 ~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~~l~~L 749 (1153)
T PLN03210 675 SSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNLRLENL 749 (1153)
T ss_pred hhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-ccccccccccccc
Confidence 888888888888888888888888765 68888888888774 3344432 3456666666655 33333211
Q ss_pred -------------------------CCCCCCCEEEecCCC-CCCcchhhCCCCCCceeEeccC-CccccchHHhhcCCcc
Q 011891 157 -------------------------DGLYSLTYLYLTDCA-ITELPESLGLLSSLEELYLERN-NFERIPESIIRLSKLS 209 (475)
Q Consensus 157 -------------------------~~l~~L~~L~L~~~~-l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~i~~l~~L~ 209 (475)
...++|+.|++++|. +.++|..++.+++|+.|+|++| +++.+|..+ .+++|+
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~ 828 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLE 828 (1153)
T ss_pred ccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccC
Confidence 112467777777774 4447877888888888888876 466777655 677888
Q ss_pred cccccccccccccCCCc-----------------------cCcceecccccccCccccCCCCCc-ceeEEEecCCccchH
Q 011891 210 SLLVSYCERLQSLPKLP-----------------------CNLYWLDAQHCTTLESLSGLFSSY-KCVFFYLNENFKLDR 265 (475)
Q Consensus 210 ~L~l~~c~~l~~lp~l~-----------------------~~L~~L~i~~c~~L~~l~~~~~~~-~~~~l~~~~c~~l~~ 265 (475)
.|++++|..++.+|..+ ++|+.|++.+|.+|+.++...... ....+.+.+|.++..
T Consensus 829 ~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 829 SLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred EEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 88888887776665443 345555566666666665532222 234466777777654
Q ss_pred H
Q 011891 266 K 266 (475)
Q Consensus 266 ~ 266 (475)
.
T Consensus 909 ~ 909 (1153)
T PLN03210 909 A 909 (1153)
T ss_pred c
Confidence 3
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=5.9e-23 Score=205.15 Aligned_cols=241 Identities=27% Similarity=0.399 Sum_probs=162.7
Q ss_pred CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCC-
Q 011891 1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAI- 78 (475)
Q Consensus 1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i- 78 (475)
|+||+++++|.++.+-+++-+|+||++ ++..+|. +.+.++..|-.|||++ +.+..+|. +..+.+|++|.|++|.+
T Consensus 110 LShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn-~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 110 LSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPN-SLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred cchhhhhhcchhhhhhcCcEEEEcccC-ccccCCc-hHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhh
Confidence 456666666666666666666666663 4555554 2344555566666665 34555554 33333333333333321
Q ss_pred -------------------------cccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccC
Q 011891 79 -------------------------EELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIE 133 (475)
Q Consensus 79 -------------------------~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~ 133 (475)
..+|.++..+.+|..++++. +++..+|+.+.++++|+.|++++|.|+++...++
T Consensus 187 hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~ 265 (1255)
T KOG0444|consen 187 HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEG 265 (1255)
T ss_pred HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHH
Confidence 13445555555666666654 3455666666666666666776666666666666
Q ss_pred CCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCC--CcchhhCCCCCCceeEeccCCccccchHHhhcCCcccc
Q 011891 134 CLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT--ELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL 211 (475)
Q Consensus 134 ~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L 211 (475)
.+.+|+.|+++.|+ +..+|..+.+++.|+.|++.+|+++ .+|..++.+..|+.+..++|++.-+|..+..|.+|+.|
T Consensus 266 ~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 266 EWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKL 344 (1255)
T ss_pred HHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHh
Confidence 66667777777665 5667777788888888888888766 38888889999999999999999899999999999999
Q ss_pred cccccccccccCC---CccCcceecccccccCccccCCC
Q 011891 212 LVSYCERLQSLPK---LPCNLYWLDAQHCTTLESLSGLF 247 (475)
Q Consensus 212 ~l~~c~~l~~lp~---l~~~L~~L~i~~c~~L~~l~~~~ 247 (475)
.+++| .|-.+|+ +.+.|+.||++..++|.--|.+.
T Consensus 345 ~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 345 KLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred ccccc-ceeechhhhhhcCCcceeeccCCcCccCCCCcc
Confidence 99876 5566775 56889999999999997655543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=5.4e-22 Score=198.35 Aligned_cols=201 Identities=23% Similarity=0.324 Sum_probs=129.1
Q ss_pred cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCcccCcccCCCC
Q 011891 12 SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSIGCLS 89 (475)
Q Consensus 12 ~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp~~i~~l~ 89 (475)
.+-++..|..||||+ +.+++.|. .+..-+++-+|+|++ +++..+|. +.++..|-.|+|++|++..+|+.+..+.
T Consensus 98 diF~l~dLt~lDLSh-NqL~EvP~--~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSH-NQLREVPT--NLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS 173 (1255)
T ss_pred hhcccccceeeecch-hhhhhcch--hhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence 333444444444444 23444442 333344444444444 33444444 3344455555555555555555555555
Q ss_pred CCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc--cCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEe
Q 011891 90 RLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE--ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYL 167 (475)
Q Consensus 90 ~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L 167 (475)
.|++|.|++|+..-.--..+..+++|++|.+++++-+ .+|.++..+.+|..+|++.|. +..+|..+.++++|+.|+|
T Consensus 174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNL 252 (1255)
T ss_pred hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheecc
Confidence 5555555554422111111223455566666666544 678888888899999998765 6677888888999999999
Q ss_pred cCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccc
Q 011891 168 TDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 168 ~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~ 217 (475)
++|.|+++....+...+|++|++++|+++.+|..+.++++|+.|.+.+|+
T Consensus 253 S~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 253 SGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred CcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc
Confidence 99999998777788889999999999999999999999999999888775
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=8.7e-21 Score=181.28 Aligned_cols=236 Identities=30% Similarity=0.411 Sum_probs=193.5
Q ss_pred CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCc
Q 011891 1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE 79 (475)
Q Consensus 1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~ 79 (475)
+.+|.++.+.+.+.++..|.+|++.++ .+...|. .++.+..++.|+.++ +++..+|+ ++.+.+|+.|+++.|.+.
T Consensus 52 ls~N~l~~l~~dl~nL~~l~vl~~~~n-~l~~lp~--aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~n~~~ 127 (565)
T KOG0472|consen 52 LSHNDLEVLREDLKNLACLTVLNVHDN-KLSQLPA--AIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSSNELK 127 (565)
T ss_pred hccCchhhccHhhhcccceeEEEeccc-hhhhCCH--HHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhcccccee
Confidence 467889999999999999999999995 4556653 577888888999998 56777887 889999999999999999
Q ss_pred ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCC
Q 011891 80 ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGL 159 (475)
Q Consensus 80 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l 159 (475)
++|++++.+..|..|+..+ +.+.++|+.++.+.+|..|++.+|.++++|+....++.|++||...|- ++.+|..++++
T Consensus 128 el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l 205 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPELGGL 205 (565)
T ss_pred ecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChhhcch
Confidence 9999999999999998887 457788888888888889999999999888877778889998877654 77888888889
Q ss_pred CCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHh-hcCCcccccccccccccccCC---CccCcceeccc
Q 011891 160 YSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII-RLSKLSSLLVSYCERLQSLPK---LPCNLYWLDAQ 235 (475)
Q Consensus 160 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~-~l~~L~~L~l~~c~~l~~lp~---l~~~L~~L~i~ 235 (475)
.+|+.|+|..|.+..+| .+..++.|++|+++.|.++.+|+.+. ++++|..||+++| +++++|. +..+|++||++
T Consensus 206 ~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 206 ESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLS 283 (565)
T ss_pred hhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhccc
Confidence 99999999999988888 67888888888888888888886655 7888888888886 5677775 35677788887
Q ss_pred ccccCccccC
Q 011891 236 HCTTLESLSG 245 (475)
Q Consensus 236 ~c~~L~~l~~ 245 (475)
+. .+..++.
T Consensus 284 NN-~is~Lp~ 292 (565)
T KOG0472|consen 284 NN-DISSLPY 292 (565)
T ss_pred CC-ccccCCc
Confidence 63 3555544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.70 E-value=4.7e-18 Score=169.40 Aligned_cols=199 Identities=23% Similarity=0.254 Sum_probs=110.6
Q ss_pred CCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCcccCc-ccCCCCCCcEEeeeCCCCCCcc-ccc----------
Q 011891 43 NKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTL-PSS---------- 108 (475)
Q Consensus 43 ~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l-p~~---------- 108 (475)
.++++|+|++| .++.+.. |..+.+|..|.|+.|+++.+|. .+.+|++|+.|+|..|. ++.. -..
T Consensus 173 ~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 173 VNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CCceEEeeccc-cccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhh
Confidence 34555555552 3333332 4455566666666666666654 34446666666665542 1111 011
Q ss_pred --------------cCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCC
Q 011891 109 --------------LCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT 173 (475)
Q Consensus 109 --------------l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~ 173 (475)
+..+.++++|++..|+++++.. ++.+++.|+.|++++|..-+.-+..++-+++|+.|+|+.|+|+
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 2233444555555555554433 3455666666666666655544555566677777777777777
Q ss_pred Cc-chhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccccccccC------CCccCcceecccccccCcccc
Q 011891 174 EL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLP------KLPCNLYWLDAQHCTTLESLS 244 (475)
Q Consensus 174 ~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~~l~~lp------~l~~~L~~L~i~~c~~L~~l~ 244 (475)
++ +..+..+..|+.|+|++|.+..+. ..+..+++|+.|+|++|..-..+. .-.++|+.|++.|. +|+.++
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~ 408 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIP 408 (873)
T ss_pred cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecc
Confidence 75 345666777777777777776655 345667777777777765322221 12466777776653 344443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=9e-20 Score=174.41 Aligned_cols=214 Identities=29% Similarity=0.382 Sum_probs=185.8
Q ss_pred CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcc
Q 011891 2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEE 80 (475)
Q Consensus 2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~ 80 (475)
.+|++.++|..++.+.+++.++.+++ ++.++|. .+.++.+|+.|+.+++ .++.+|+ ++.+-.|+.|+..+|++.+
T Consensus 76 ~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~--~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~i~s 151 (565)
T KOG0472|consen 76 HDNKLSQLPAAIGELEALKSLNVSHN-KLSELPE--QIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQISS 151 (565)
T ss_pred ccchhhhCCHHHHHHHHHHHhhcccc-hHhhccH--HHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhcccccccc
Confidence 57889999999999999999999985 5677774 5778889999999994 5666665 9999999999999999999
Q ss_pred cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCC
Q 011891 81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLY 160 (475)
Q Consensus 81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~ 160 (475)
+|..+.++.+|..|++.++ .++.+|+..-+++.|++||...|-++.+|+.++.+.+|..|++..|+ +..+| .+.++.
T Consensus 152 lp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs 228 (565)
T KOG0472|consen 152 LPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLP-EFPGCS 228 (565)
T ss_pred CchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCC-CCCccH
Confidence 9999999999999999995 46666666666999999999999999999999999999999999987 56677 778899
Q ss_pred CCCEEEecCCCCCCcchhhC-CCCCCceeEeccCCccccchHHhhcCCcccccccccccccccC
Q 011891 161 SLTYLYLTDCAITELPESLG-LLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLP 223 (475)
Q Consensus 161 ~L~~L~L~~~~l~~lp~~l~-~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp 223 (475)
.|++|+++.|.+.-+|+... ++++|..||+..|+++++|..+..+.+|.+||+++| .+..+|
T Consensus 229 ~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp 291 (565)
T KOG0472|consen 229 LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLP 291 (565)
T ss_pred HHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCC-ccccCC
Confidence 99999999999999888765 899999999999999999999999999999999987 444444
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=5.1e-19 Score=151.19 Aligned_cols=175 Identities=30% Similarity=0.395 Sum_probs=119.4
Q ss_pred CcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCc
Q 011891 59 LPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSAL 138 (475)
Q Consensus 59 ~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L 138 (475)
+|.+..+.+++.|.|++|+++.+|..|..+.+|+.|++.+ +.++++|..++.+++|+.|+++-|.+..+|..++.++.|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 3334445555556666666666666666666666666655 345566666666666666666666666666666666666
Q ss_pred CEEEcCCCCCC-CccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccc
Q 011891 139 CVLDLGDCKSL-KSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 139 ~~L~L~~c~~l-~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~ 217 (475)
+.||+.+|... ..+|..+-.+..|+.|+|++|.+.-+|..++.+++|+.|.+..|.+-++|..++.+..|+.|.|.++
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn- 183 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN- 183 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc-
Confidence 66666665532 2466666677778888888888888888889999999999999988889988999999999998887
Q ss_pred cccccCCCccCcceecccccc
Q 011891 218 RLQSLPKLPCNLYWLDAQHCT 238 (475)
Q Consensus 218 ~l~~lp~l~~~L~~L~i~~c~ 238 (475)
.++. +|+.|..|++-+-.
T Consensus 184 rl~v---lppel~~l~l~~~k 201 (264)
T KOG0617|consen 184 RLTV---LPPELANLDLVGNK 201 (264)
T ss_pred eeee---cChhhhhhhhhhhH
Confidence 3333 45566666655443
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.68 E-value=9.4e-18 Score=167.27 Aligned_cols=233 Identities=24% Similarity=0.260 Sum_probs=165.6
Q ss_pred CCCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC
Q 011891 1 MPHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA 77 (475)
Q Consensus 1 l~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~ 77 (475)
|+.|.|.+++. .+-.-.+|++|+|++|+ ++.+-. ..+.++.+|..|.|+. +.+..+|. |.++++|+.|+|..|.
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~-~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLET-GHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeecccc-cccccc-ccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccc
Confidence 34556666653 33344567777777643 333321 2355667788888887 56777776 5568888888887777
Q ss_pred Cccc-CcccC------------------------CCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccC-Ccc
Q 011891 78 IEEL-PSSIG------------------------CLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSP 131 (475)
Q Consensus 78 i~~l-p~~i~------------------------~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~ 131 (475)
|+.+ ...+. .+.++++|+|..|.....--.++.+++.|+.|+++.|.|..+ +++
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence 6543 22233 355666666666433322234678899999999999999966 455
Q ss_pred cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcc-hhhCCCCCCceeEeccCCcc----ccchHHhhcC
Q 011891 132 IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFE----RIPESIIRLS 206 (475)
Q Consensus 132 i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~n~l~----~lp~~i~~l~ 206 (475)
-...++|++|+|++|...+--+..+..+..|+.|.|+.|.+..+. ..+..+++|++|||++|.+. .-...+..++
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~ 392 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP 392 (873)
T ss_pred hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence 677899999999999855544556678899999999999999864 45778999999999999875 2234567799
Q ss_pred CcccccccccccccccCC----CccCcceeccccc
Q 011891 207 KLSSLLVSYCERLQSLPK----LPCNLYWLDAQHC 237 (475)
Q Consensus 207 ~L~~L~l~~c~~l~~lp~----l~~~L~~L~i~~c 237 (475)
+|++|++.+| .++++|. -.+.|++|++.+.
T Consensus 393 ~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 393 SLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hhhheeecCc-eeeecchhhhccCcccceecCCCC
Confidence 9999999987 6888875 3477888888664
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=2.7e-18 Score=146.80 Aligned_cols=168 Identities=31% Similarity=0.457 Sum_probs=151.2
Q ss_pred ChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCC
Q 011891 35 NPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLK 113 (475)
Q Consensus 35 ~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~ 113 (475)
++.++.++.+.+.|.|++ +.+..+|. |+.+.+|+.|++.+|.|+++|.++..+++|+.|+++- +.+..+|.+++.++
T Consensus 25 ~~~gLf~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p 102 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFP 102 (264)
T ss_pred hcccccchhhhhhhhccc-CceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCc
Confidence 334566778888899999 56677766 9999999999999999999999999999999999987 56788999999999
Q ss_pred CCcEEEeeCcCCc--cCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEec
Q 011891 114 SLEEICLTGSAIE--ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLE 191 (475)
Q Consensus 114 ~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~ 191 (475)
.|+.||+++|++. .+|..+..++.|+.|.+++|. .+.+|...+++.+|+.|.+.+|.+.++|..++.++.|++|.+.
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence 9999999999887 689999999999999999887 6778989999999999999999999999999999999999999
Q ss_pred cCCccccchHHhhc
Q 011891 192 RNNFERIPESIIRL 205 (475)
Q Consensus 192 ~n~l~~lp~~i~~l 205 (475)
+|+++.+|..++++
T Consensus 182 gnrl~vlppel~~l 195 (264)
T KOG0617|consen 182 GNRLTVLPPELANL 195 (264)
T ss_pred cceeeecChhhhhh
Confidence 99999999877663
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=6.6e-16 Score=166.32 Aligned_cols=219 Identities=24% Similarity=0.368 Sum_probs=172.3
Q ss_pred CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCc
Q 011891 1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE 79 (475)
Q Consensus 1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~ 79 (475)
|.++++..+|..+. ++|+.|+|++| .++.+|. .+ ..+|+.|++++| .++.+|. +. .+|+.|+|++|.+.
T Consensus 185 L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~--~l--~~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 185 LKILGLTTIPACIP--EQITTLILDNN-ELKSLPE--NL--QGNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred eCCCCcCcCCcccc--cCCcEEEecCC-CCCcCCh--hh--ccCCCEEECCCC-ccccCChhhh--ccccEEECcCCccC
Confidence 35667788887653 57999999986 6778875 22 258999999985 5778886 33 57999999999999
Q ss_pred ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCC
Q 011891 80 ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGL 159 (475)
Q Consensus 80 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l 159 (475)
.+|..+. .+|+.|++++| .+..+|..+. ++|+.|++++|.++.+|..+. .+|+.|++++|. +..+|..+ .
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l--~ 324 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPETL--P 324 (754)
T ss_pred cCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCccc--c
Confidence 9998764 58999999975 5678887664 589999999999999887653 578999999876 44566433 3
Q ss_pred CCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCC-CccCcceecccccc
Q 011891 160 YSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCT 238 (475)
Q Consensus 160 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~-l~~~L~~L~i~~c~ 238 (475)
++|+.|++++|.++.+|..+ +++|+.|++++|+++.+|..+ .++|+.|+|++| .+..+|. ++.+|+.|+++++
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N-~Lt~LP~~l~~sL~~LdLs~N- 398 (754)
T PRK15370 325 PGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRN-ALTNLPENLPAALQIMQASRN- 398 (754)
T ss_pred ccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCC-cCCCCCHhHHHHHHHHhhccC-
Confidence 68999999999999988765 379999999999999888765 378999999998 4667774 5678899999885
Q ss_pred cCccccC
Q 011891 239 TLESLSG 245 (475)
Q Consensus 239 ~L~~l~~ 245 (475)
+|+.++.
T Consensus 399 ~L~~LP~ 405 (754)
T PRK15370 399 NLVRLPE 405 (754)
T ss_pred CcccCch
Confidence 5666665
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=5.4e-16 Score=166.99 Aligned_cols=204 Identities=26% Similarity=0.404 Sum_probs=122.0
Q ss_pred CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCcccCCCCCCcEEee
Q 011891 18 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 96 (475)
Q Consensus 18 ~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 96 (475)
+...|++++. .++.+|. .+. +.|+.|+|++| .++.+|. +. ++|++|++++|.++.+|..+. .+|+.|+|
T Consensus 179 ~~~~L~L~~~-~LtsLP~--~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPA--CIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCC-CcCcCCc--ccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEEC
Confidence 4566666663 4556654 121 35667777664 5556665 22 467777777777776665442 35777777
Q ss_pred eCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcc
Q 011891 97 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP 176 (475)
Q Consensus 97 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp 176 (475)
++|. +..+|..+. .+|+.|++++|.++.+|..+. .+|+.|++++|. +..+|..+ .++|+.|++++|.++.+|
T Consensus 249 s~N~-L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~l--p~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 249 SINR-ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHL--PSGITHLNVQSNSLTALP 320 (754)
T ss_pred cCCc-cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCcccc--hhhHHHHHhcCCccccCC
Confidence 7654 446665543 367777777777776666543 467777777664 44454332 135666777777776666
Q ss_pred hhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCC-CccCcceecccccccCccccC
Q 011891 177 ESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCTTLESLSG 245 (475)
Q Consensus 177 ~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~-l~~~L~~L~i~~c~~L~~l~~ 245 (475)
..+ .++|+.|++++|.++.+|..+ .++|+.|++++|+ +..+|. +|++|+.|++++| .|+.++.
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N-~Lt~LP~ 384 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRN-ALTNLPE 384 (754)
T ss_pred ccc--cccceeccccCCccccCChhh--cCcccEEECCCCC-CCcCChhhcCCcCEEECCCC-cCCCCCH
Confidence 433 356777777777776666544 2567777777663 455553 5566777777665 3554443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=2.7e-15 Score=160.90 Aligned_cols=215 Identities=27% Similarity=0.348 Sum_probs=116.3
Q ss_pred CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891 1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE 80 (475)
Q Consensus 1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~ 80 (475)
|++++++.+|..+. ++|+.|++.+| .++.+|. ..++|++|+|++| .++.+|.. .++|+.|++++|.+..
T Consensus 208 Ls~~~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~l--p~sL~~L~Ls~N~L~~ 276 (788)
T PRK15387 208 VGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPVL--PPGLLELSIFSNPLTH 276 (788)
T ss_pred cCCCCCCcCCcchh--cCCCEEEccCC-cCCCCCC-----CCCCCcEEEecCC-ccCcccCc--ccccceeeccCCchhh
Confidence 35667778887664 47888888874 5677764 2467888888884 66677653 3567777777777666
Q ss_pred cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCC-----------------CCCcCEEEc
Q 011891 81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIEC-----------------LSALCVLDL 143 (475)
Q Consensus 81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~-----------------l~~L~~L~L 143 (475)
+|.. ..+|+.|++++| .++.+|.. +++|+.|++++|.++.+|..... ..+|+.|++
T Consensus 277 Lp~l---p~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdL 349 (788)
T PRK15387 277 LPAL---PSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSV 349 (788)
T ss_pred hhhc---hhhcCEEECcCC-cccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEec
Confidence 6642 245666666664 34455542 34566666666666655542111 123444444
Q ss_pred CCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccC
Q 011891 144 GDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLP 223 (475)
Q Consensus 144 ~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp 223 (475)
++|. +..+|.. ..+|+.|++++|.++.+|.. +.+|+.|++++|+++.+|.. .++|+.|++++|. ++.+|
T Consensus 350 S~N~-Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP 418 (788)
T PRK15387 350 SDNQ-LASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNR-LTSLP 418 (788)
T ss_pred CCCc-cCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCc-CCCCC
Confidence 4433 2223321 12344444444444444431 23455555555555555532 2455555555552 44555
Q ss_pred CCccCcceecccccccCccccC
Q 011891 224 KLPCNLYWLDAQHCTTLESLSG 245 (475)
Q Consensus 224 ~l~~~L~~L~i~~c~~L~~l~~ 245 (475)
.+|.+|+.|+++++ .++.+|.
T Consensus 419 ~l~~~L~~L~Ls~N-qLt~LP~ 439 (788)
T PRK15387 419 MLPSGLLSLSVYRN-QLTRLPE 439 (788)
T ss_pred cchhhhhhhhhccC-cccccCh
Confidence 55555555555542 3444443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=2.1e-15 Score=161.75 Aligned_cols=207 Identities=23% Similarity=0.276 Sum_probs=139.1
Q ss_pred CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcC-----------------
Q 011891 1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEIS----------------- 63 (475)
Q Consensus 1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~----------------- 63 (475)
+.+|+|+.||.. .++|++|+|++| .++.+|.. .++|+.|++++| .+..+|.+.
T Consensus 229 L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l-----p~sL~~L~Ls~N-~L~~Lp~lp~~L~~L~Ls~N~Lt~LP 298 (788)
T PRK15387 229 IPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL-----PPGLLELSIFSN-PLTHLPALPSGLCKLWIFGNQLTSLP 298 (788)
T ss_pred ccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc-----ccccceeeccCC-chhhhhhchhhcCEEECcCCcccccc
Confidence 457888888863 588999999986 67777741 245666666664 344444311
Q ss_pred -CCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEE
Q 011891 64 -SAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLD 142 (475)
Q Consensus 64 -~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 142 (475)
.+++|+.|++++|.++.+|.. ..+|+.|++++| .+..+|.. ..+|+.|++++|.++.+|.. ..+|+.|+
T Consensus 299 ~~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~ 368 (788)
T PRK15387 299 VLPPGLQELSVSDNQLASLPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDNQLASLPTL---PSELYKLW 368 (788)
T ss_pred ccccccceeECCCCccccCCCC---cccccccccccC-cccccccc---ccccceEecCCCccCCCCCC---Ccccceeh
Confidence 123455555555555444432 123444455443 23344431 24789999999999998864 35788889
Q ss_pred cCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCccccccccccccccc
Q 011891 143 LGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL 222 (475)
Q Consensus 143 L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~l 222 (475)
+++|. +..+|.. ..+|+.|++++|.++.+|.. .++|+.|++++|+++.+|.. ..+|+.|++++| .++.+
T Consensus 369 Ls~N~-L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~N-qLt~L 437 (788)
T PRK15387 369 AYNNR-LTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRN-QLTRL 437 (788)
T ss_pred hhccc-cccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccC-ccccc
Confidence 98876 5556643 35799999999999998863 46899999999999999864 357889999987 46677
Q ss_pred CCC---ccCcceecccccc
Q 011891 223 PKL---PCNLYWLDAQHCT 238 (475)
Q Consensus 223 p~l---~~~L~~L~i~~c~ 238 (475)
|.- .++|+.|++++++
T Consensus 438 P~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 438 PESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ChHHhhccCCCeEECCCCC
Confidence 752 3566677776653
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.53 E-value=2.9e-16 Score=164.34 Aligned_cols=214 Identities=27% Similarity=0.359 Sum_probs=140.2
Q ss_pred CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCcccCCCCCCcEEee
Q 011891 18 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 96 (475)
Q Consensus 18 ~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 96 (475)
+|+++++++ ..++.+| ++++.+.+|+.|+..+ +.+..+|. +..+.+|+.|....|.++.+|.....+++|++|+|
T Consensus 242 nl~~~dis~-n~l~~lp--~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 242 NLQYLDISH-NNLSNLP--EWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cceeeecch-hhhhcch--HHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 455566665 2445555 4556666666666666 34455555 55666666666666666666666666666666666
Q ss_pred eCCCCCCccccccC--------------------------CCCCCcEEEeeCcCCc-cCCcccCCCCCcCEEEcCCCCCC
Q 011891 97 GDCKNLKTLPSSLC--------------------------KLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSL 149 (475)
Q Consensus 97 ~~c~~l~~lp~~l~--------------------------~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l 149 (475)
..| ++..+|+.+. .+..|+.|.+.+|.++ ..-+.+.+..+|+.|+|++|. +
T Consensus 318 ~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L 395 (1081)
T KOG0618|consen 318 QSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-L 395 (1081)
T ss_pred hhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-c
Confidence 653 3444443211 1223455555566555 333445667788888888876 5
Q ss_pred CccccC-CCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccc--cC-CC
Q 011891 150 KSLKLP-FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQS--LP-KL 225 (475)
Q Consensus 150 ~~l~~~-~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~--lp-~l 225 (475)
..+|.. +.++..|+.|+|++|.++.+|..+..+..|++|...+|++..+| .+.+++.|+.+|++.|. |+. +| ..
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~~ 473 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNN-LSEVTLPEAL 473 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccch-hhhhhhhhhC
Confidence 555544 36777888888888888888888888888888888888888888 77888888889988653 332 23 35
Q ss_pred c-cCcceeccccccc
Q 011891 226 P-CNLYWLDAQHCTT 239 (475)
Q Consensus 226 ~-~~L~~L~i~~c~~ 239 (475)
| +.|++||++|.+.
T Consensus 474 p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNTR 488 (1081)
T ss_pred CCcccceeeccCCcc
Confidence 6 8899999888653
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.43 E-value=9.1e-15 Score=153.28 Aligned_cols=230 Identities=27% Similarity=0.384 Sum_probs=148.7
Q ss_pred CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcc
Q 011891 2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEE 80 (475)
Q Consensus 2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~ 80 (475)
++.+++-+|..+..-..+..|+++.+. +...| ...+...-+|+.|++++ +.+..+|. +..+.+|+.|+++.|.|..
T Consensus 6 s~~~l~~ip~~i~~~~~~~~ln~~~N~-~l~~p-l~~~~~~v~L~~l~lsn-n~~~~fp~~it~l~~L~~ln~s~n~i~~ 82 (1081)
T KOG0618|consen 6 SDEQLELIPEQILNNEALQILNLRRNS-LLSRP-LEFVEKRVKLKSLDLSN-NQISSFPIQITLLSHLRQLNLSRNYIRS 82 (1081)
T ss_pred ccccCcccchhhccHHHHHhhhccccc-cccCc-hHHhhheeeeEEeeccc-cccccCCchhhhHHHHhhcccchhhHhh
Confidence 456677777777666668888888753 44445 45566666688888887 56777776 7788888888888888888
Q ss_pred cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCE--------------------
Q 011891 81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCV-------------------- 140 (475)
Q Consensus 81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~-------------------- 140 (475)
+|.++.++.+|++|+|.+ +.+..+|.++..+++|++|++++|.+..+|..+..++.+..
T Consensus 83 vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~ 161 (1081)
T KOG0618|consen 83 VPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKL 161 (1081)
T ss_pred Cchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhh
Confidence 888888888888888876 56778888888888888888888877666654433322222
Q ss_pred ---------------------EEcCCCCCC----------CccccC-----------------------------CCCCC
Q 011891 141 ---------------------LDLGDCKSL----------KSLKLP-----------------------------FDGLY 160 (475)
Q Consensus 141 ---------------------L~L~~c~~l----------~~l~~~-----------------------------~~~l~ 160 (475)
|+|++|... +.+-.. ..--.
T Consensus 162 ~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~ 241 (1081)
T KOG0618|consen 162 DLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPL 241 (1081)
T ss_pred hhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccc
Confidence 333333221 000000 00112
Q ss_pred CCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCCc---cCcceecccc
Q 011891 161 SLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLP---CNLYWLDAQH 236 (475)
Q Consensus 161 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l~---~~L~~L~i~~ 236 (475)
+|+.++++.++++.+|++++.+.+|+.+++.+|.++.+|..+...++|+.|.+.+| .+..+|..+ .+|+.|+++.
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehh
Confidence 45666666666666677777777777777777777766666666666666666665 345555433 3555666543
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.38 E-value=9.2e-14 Score=137.19 Aligned_cols=224 Identities=22% Similarity=0.188 Sum_probs=151.4
Q ss_pred cccCCCCCcEEeccCCCCccCC--CChhhccCCCCCcEEEEeCCCCCCC-------CcC-cCCCCCCcEEEccccCCc-c
Q 011891 12 SVQHHGKLNQIIMAACNIFTKT--PNPSLIQHLNKLVILNLSGCSKLKS-------LPE-ISSAGNIEKILLDGTAIE-E 80 (475)
Q Consensus 12 ~~~~l~~L~~L~Ls~~~~l~~~--p~~~~~~~l~~L~~L~L~~c~~l~~-------~p~-i~~l~~L~~L~L~~~~i~-~ 80 (475)
-+..+.+|+.|++++|..-... .....+...+.|+.|+++++.. .. ++. +..+++|+.|++++|.+. .
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc-CCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 3456777999999997532110 0122456778899999998643 32 122 457889999999999886 3
Q ss_pred cCcccCCC---CCCcEEeeeCCCCCC----ccccccCCC-CCCcEEEeeCcCCc-----cCCcccCCCCCcCEEEcCCCC
Q 011891 81 LPSSIGCL---SRLLELNLGDCKNLK----TLPSSLCKL-KSLEEICLTGSAIE-----ELPSPIECLSALCVLDLGDCK 147 (475)
Q Consensus 81 lp~~i~~l---~~L~~L~L~~c~~l~----~lp~~l~~l-~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~c~ 147 (475)
.+..+..+ ++|++|++++|.... .+...+..+ ++|+.|++++|.++ .++..+..+.+|++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 33344444 449999999986442 233455666 89999999999887 344456677889999999987
Q ss_pred CCC----ccccCCCCCCCCCEEEecCCCCCC-----cchhhCCCCCCceeEeccCCccc--cchHHhh----cCCccccc
Q 011891 148 SLK----SLKLPFDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFER--IPESIIR----LSKLSSLL 212 (475)
Q Consensus 148 ~l~----~l~~~~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~~--lp~~i~~----l~~L~~L~ 212 (475)
... .++..+..+++|+.|++++|.+++ ++..+..+++|+.|++++|.++. +...... .+.|++|+
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 256 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS 256 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEE
Confidence 432 122223455789999999998875 45567788999999999998863 2211222 37999999
Q ss_pred ccccccc--------cccCCCccCcceeccccc
Q 011891 213 VSYCERL--------QSLPKLPCNLYWLDAQHC 237 (475)
Q Consensus 213 l~~c~~l--------~~lp~l~~~L~~L~i~~c 237 (475)
+++|... +.++.. ++|+.++++++
T Consensus 257 l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N 288 (319)
T cd00116 257 LSCNDITDDGAKDLAEVLAEK-ESLLELDLRGN 288 (319)
T ss_pred ccCCCCCcHHHHHHHHHHhcC-CCccEEECCCC
Confidence 9998532 122223 56777777664
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.36 E-value=1.2e-13 Score=136.26 Aligned_cols=217 Identities=22% Similarity=0.211 Sum_probs=147.7
Q ss_pred EEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCC----CCcC-cCCCCCCcEEEccccCCcc-------cCcccCCC
Q 011891 21 QIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLK----SLPE-ISSAGNIEKILLDGTAIEE-------LPSSIGCL 88 (475)
Q Consensus 21 ~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~----~~p~-i~~l~~L~~L~L~~~~i~~-------lp~~i~~l 88 (475)
.|+|.++ .+...-....+..+..|+.|++++|..-. .++. +...++|++|+++++.+.. ++..+..+
T Consensus 2 ~l~L~~~-~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGE-LLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccC-cccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 3555443 33322223345566779999999975322 2443 5577889999998886652 33456678
Q ss_pred CCCcEEeeeCCCCCCccccccCCCCC---CcEEEeeCcCCcc-----CCcccCCC-CCcCEEEcCCCCCCC----ccccC
Q 011891 89 SRLLELNLGDCKNLKTLPSSLCKLKS---LEEICLTGSAIEE-----LPSPIECL-SALCVLDLGDCKSLK----SLKLP 155 (475)
Q Consensus 89 ~~L~~L~L~~c~~l~~lp~~l~~l~~---L~~L~l~~~~i~~-----lp~~i~~l-~~L~~L~L~~c~~l~----~l~~~ 155 (475)
++|+.|++++|......+..+..+.+ |++|++++|.+.. +...+..+ ++|+.|++++|.... .+...
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 89999999998766555554444444 9999999988762 33345566 889999999988542 22333
Q ss_pred CCCCCCCCEEEecCCCCCC-----cchhhCCCCCCceeEeccCCcc-----ccchHHhhcCCccccccccccccc----c
Q 011891 156 FDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFE-----RIPESIIRLSKLSSLLVSYCERLQ----S 221 (475)
Q Consensus 156 ~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~l~~c~~l~----~ 221 (475)
+..+++|+.|++++|.+++ ++..+...++|+.|++++|.++ .++..+..+++|++|++++|+.-. .
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 4567789999999998884 4455666789999999999875 344556678899999999985221 1
Q ss_pred c----CCCccCcceecccccc
Q 011891 222 L----PKLPCNLYWLDAQHCT 238 (475)
Q Consensus 222 l----p~l~~~L~~L~i~~c~ 238 (475)
+ +.....|+.|++.+|.
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 241 LASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHhccCCCceEEEccCCC
Confidence 1 1113688999998873
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.29 E-value=1.3e-12 Score=143.18 Aligned_cols=238 Identities=28% Similarity=0.377 Sum_probs=172.8
Q ss_pred CCcccccccccCCCCCcEEeccCCCC-ccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCccc
Q 011891 4 SNIEQLSESVQHHGKLNQIIMAACNI-FTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEEL 81 (475)
Q Consensus 4 s~l~~L~~~~~~l~~L~~L~Ls~~~~-l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~l 81 (475)
++++.+.... ..++|+.|-+.++.. +..++. ..+..++.|++|||++|..+..+|+ |+.+-+|++|+++++.++++
T Consensus 533 ~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~-~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L 610 (889)
T KOG4658|consen 533 NKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISG-EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL 610 (889)
T ss_pred cchhhccCCC-CCCccceEEEeecchhhhhcCH-HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc
Confidence 4455554433 455899998888764 555543 3477899999999999999999999 99999999999999999999
Q ss_pred CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc---cCCcccCCCCCcCEEEcCCCCCCCccccCCCC
Q 011891 82 PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE---ELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 158 (475)
Q Consensus 82 p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~ 158 (475)
|..+++|..|.+|++..+..+..+|..+..+.+|++|.+...... ..-..+..+.+|+.+....... .+-..+..
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~ 688 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLG 688 (889)
T ss_pred chHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhh
Confidence 999999999999999998888888877777999999999876532 1222345666677666654432 11111222
Q ss_pred CCCCC----EEEecCCCCCCcchhhCCCCCCceeEeccCCccccch-----H-Hh-hcCCcccccccccccccccCC--C
Q 011891 159 LYSLT----YLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE-----S-II-RLSKLSSLLVSYCERLQSLPK--L 225 (475)
Q Consensus 159 l~~L~----~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-----~-i~-~l~~L~~L~l~~c~~l~~lp~--l 225 (475)
+..|. .+.+.+|.....+..+..+.+|+.|.+.+|.+..... . .. .++++..+.+.+|..++.+.. .
T Consensus 689 ~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f 768 (889)
T KOG4658|consen 689 MTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF 768 (889)
T ss_pred hHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhc
Confidence 33332 3343445555566778889999999999998753221 1 11 256778888888887777663 6
Q ss_pred ccCcceecccccccCccccC
Q 011891 226 PCNLYWLDAQHCTTLESLSG 245 (475)
Q Consensus 226 ~~~L~~L~i~~c~~L~~l~~ 245 (475)
+++|+.|.+..|..++.+..
T Consensus 769 ~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred cCcccEEEEecccccccCCC
Confidence 89999999999988887654
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.25 E-value=6.5e-13 Score=127.60 Aligned_cols=71 Identities=28% Similarity=0.309 Sum_probs=56.3
Q ss_pred CCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccccccccCCCc
Q 011891 156 FDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPKLP 226 (475)
Q Consensus 156 ~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~l~ 226 (475)
+.++++|+.|+|++|.++++ +.++..+..+++|.|.+|++..+. ..+..+..|+.|++++|+.-.-.|...
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF 342 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF 342 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc
Confidence 46788999999999999985 567888899999999999988765 457788999999999886544444433
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=2.7e-13 Score=135.59 Aligned_cols=166 Identities=27% Similarity=0.411 Sum_probs=95.6
Q ss_pred cEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcC
Q 011891 46 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSA 124 (475)
Q Consensus 46 ~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 124 (475)
...||+. +....+|. +..+..|+.+.|+.|.+..+|..+.++..|.+|+|+.| .+..+|..++.++ |+.|.+++|+
T Consensus 78 ~~aDlsr-NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSR-NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhccc-cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCc
Confidence 3444554 33444554 44445555566666666666666666666666666653 3455555555543 5666666666
Q ss_pred CccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhh
Q 011891 125 IEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIR 204 (475)
Q Consensus 125 i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~ 204 (475)
++.+|..++.+..|..|+.+.|. +..+|..++++.+|+.|.+..|++..+|+.+. .-.|..||++.|++..||..+.+
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~ 232 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRK 232 (722)
T ss_pred cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhh
Confidence 66666666655666666666554 34455555556666666666666666665555 33455666666666666666666
Q ss_pred cCCccccccccc
Q 011891 205 LSKLSSLLVSYC 216 (475)
Q Consensus 205 l~~L~~L~l~~c 216 (475)
+..|+.|-|.+|
T Consensus 233 m~~Lq~l~LenN 244 (722)
T KOG0532|consen 233 MRHLQVLQLENN 244 (722)
T ss_pred hhhheeeeeccC
Confidence 666666666554
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.21 E-value=4.3e-13 Score=128.81 Aligned_cols=215 Identities=19% Similarity=0.219 Sum_probs=140.9
Q ss_pred CCCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCC----------
Q 011891 1 MPHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGN---------- 67 (475)
Q Consensus 1 l~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~---------- 67 (475)
|..|+|+.+|+ .++++++||.||||+| ++..+.. ..+..+..|..|-+.|+++++++|. ++.+..
T Consensus 74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p-~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 74 LDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAP-DAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred eccCCcccCChhhccchhhhceeccccc-chhhcCh-HhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence 34688999985 6899999999999996 4555532 4677788888888888888988885 555544
Q ss_pred --------------CcEEEccccCCcccCc-ccCCCCCCcEEeeeCCCCCC------------ccccccCCCCCCcEEEe
Q 011891 68 --------------IEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLK------------TLPSSLCKLKSLEEICL 120 (475)
Q Consensus 68 --------------L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~------------~lp~~l~~l~~L~~L~l 120 (475)
|..|.+.+|.++.++. .+..+..++++.+..+.... ..|..++......-..+
T Consensus 152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl 231 (498)
T KOG4237|consen 152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRL 231 (498)
T ss_pred hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHH
Confidence 4444555555554444 44555555555554433110 01111111111100000
Q ss_pred eC-------------------------c-CCccCCc-ccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCC
Q 011891 121 TG-------------------------S-AIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT 173 (475)
Q Consensus 121 ~~-------------------------~-~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~ 173 (475)
.+ + .....|. .+..+++|++|++++|.....-+..+.+...++.|.|..|++.
T Consensus 232 ~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~ 311 (498)
T KOG4237|consen 232 YYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE 311 (498)
T ss_pred HHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH
Confidence 00 0 1111121 2567899999999999876666677889999999999999988
Q ss_pred Ccc-hhhCCCCCCceeEeccCCcccc-chHHhhcCCcccccccccc
Q 011891 174 ELP-ESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 174 ~lp-~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c~ 217 (475)
.+. ..+..+..|+.|+|++|+|+.+ |..+..+.+|..|++-.|+
T Consensus 312 ~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 312 FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 753 4577899999999999999854 5677788888888886553
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=1.2e-11 Score=126.00 Aligned_cols=179 Identities=33% Similarity=0.458 Sum_probs=124.3
Q ss_pred ccCCCCCcEEEEeCCCCCCCCcC-cCCCC-CCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCc
Q 011891 39 IQHLNKLVILNLSGCSKLKSLPE-ISSAG-NIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLE 116 (475)
Q Consensus 39 ~~~l~~L~~L~L~~c~~l~~~p~-i~~l~-~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~ 116 (475)
+..++.++.|++.+ ..+.++|. ...+. +|+.|++++|.+..+|..++.+++|+.|++++| .+..+|...+.++.|+
T Consensus 112 ~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCC-cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 44456677777776 45666666 44443 777788877777777777777777888877774 4566666555677777
Q ss_pred EEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcc
Q 011891 117 EICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE 196 (475)
Q Consensus 117 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~ 196 (475)
.|++++|.+..+|..+..+.+|++|.+++|.. ...+..+.++.++..|.+.++++..++..++.+++|+.|++++|.++
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceeeeccchhccccccceecccccccc
Confidence 77777777777777766666777777777752 22344456666777777777777776677777777777777777777
Q ss_pred ccchHHhhcCCcccccccccccccc
Q 011891 197 RIPESIIRLSKLSSLLVSYCERLQS 221 (475)
Q Consensus 197 ~lp~~i~~l~~L~~L~l~~c~~l~~ 221 (475)
.++. +..+.+|+.|+++++.....
T Consensus 269 ~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 269 SISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccc-ccccCccCEEeccCcccccc
Confidence 7765 66777777777777654433
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=1.8e-12 Score=129.83 Aligned_cols=207 Identities=21% Similarity=0.294 Sum_probs=167.6
Q ss_pred CCCccccccccc--CCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCc
Q 011891 3 HSNIEQLSESVQ--HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE 79 (475)
Q Consensus 3 ~s~l~~L~~~~~--~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~ 79 (475)
+.+++..|-+-. .+.--...||+.| .+.++|. .+..+-.|+.+.|+. +.+..+|. +.++..|.+|+|+.|.+.
T Consensus 59 ~rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~elp~--~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~NqlS 134 (722)
T KOG0532|consen 59 GRRLKEFPRGAASYDLTDTVFADLSRN-RFSELPE--EACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSNQLS 134 (722)
T ss_pred cchhhcCCCccccccccchhhhhcccc-ccccCch--HHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccchhh
Confidence 444555553222 2333455778875 4566664 345566778888887 56778887 889999999999999999
Q ss_pred ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCC
Q 011891 80 ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGL 159 (475)
Q Consensus 80 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l 159 (475)
.+|..+..|+ |+.|.+++ ++++.+|+.++.+..|..|+.+.|.+..+|+.++.+.+|+.|.+..|. +..+|..+..+
T Consensus 135 ~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L 211 (722)
T KOG0532|consen 135 HLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL 211 (722)
T ss_pred cCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC
Confidence 9999988776 99999988 578999999999999999999999999999999999999999999987 55577666644
Q ss_pred CCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHh---hcCCcccccccccc
Q 011891 160 YSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII---RLSKLSSLLVSYCE 217 (475)
Q Consensus 160 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~---~l~~L~~L~l~~c~ 217 (475)
+ |..||++.|++..+|-.+..++.|++|-|.+|.+.+=|+.|. ...--++|++.-|.
T Consensus 212 p-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 212 P-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred c-eeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 4 999999999999999999999999999999999998887664 33455677887774
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=4.8e-11 Score=121.65 Aligned_cols=193 Identities=30% Similarity=0.384 Sum_probs=158.3
Q ss_pred cccccCCCCCcEEeccCCCCccCCCChhhccCCC-CCcEEEEeCCCCCCCCc-CcCCCCCCcEEEccccCCcccCcccCC
Q 011891 10 SESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLN-KLVILNLSGCSKLKSLP-EISSAGNIEKILLDGTAIEELPSSIGC 87 (475)
Q Consensus 10 ~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~-~L~~L~L~~c~~l~~~p-~i~~l~~L~~L~L~~~~i~~lp~~i~~ 87 (475)
...+..++.++.|++.+ ..+++++.. ...+. +|+.|++++ +.+..+| .+..+++|+.|++++|.+..+|...+.
T Consensus 109 ~~~~~~~~~l~~L~l~~-n~i~~i~~~--~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 109 ISELLELTNLTSLDLDN-NNITDIPPL--IGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred chhhhcccceeEEecCC-cccccCccc--cccchhhcccccccc-cchhhhhhhhhccccccccccCCchhhhhhhhhhh
Confidence 34455667899999988 466777652 34443 899999999 6788886 589999999999999999999998889
Q ss_pred CCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEe
Q 011891 88 LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYL 167 (475)
Q Consensus 88 l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L 167 (475)
+++|+.|+++++ .+..+|..+.....|++|.+++|.+...+..+..+.++..+.+.++. +..++...+.+++|+.|++
T Consensus 185 ~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 185 LSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDL 262 (394)
T ss_pred hhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccchhccccccceecc
Confidence 999999999994 67888887767777999999999888888888999999999977766 4444566788899999999
Q ss_pred cCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcc
Q 011891 168 TDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLS 209 (475)
Q Consensus 168 ~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~ 209 (475)
++|.+++++. ++.+.+|+.|+++++.+..++........+.
T Consensus 263 s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~~~~~ 303 (394)
T COG4886 263 SNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIALLLLLL 303 (394)
T ss_pred cccccccccc-ccccCccCEEeccCccccccchhhhccchhH
Confidence 9999999887 8999999999999999876665544444333
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=1.6e-10 Score=126.83 Aligned_cols=152 Identities=27% Similarity=0.336 Sum_probs=114.1
Q ss_pred cCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccC--CcccCcc-cCCCCCCcEEeeeCCCCCCccccccCCCCCCc
Q 011891 40 QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTA--IEELPSS-IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLE 116 (475)
Q Consensus 40 ~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~--i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~ 116 (475)
.+....+.+.+-+ +.+..++.-...++|++|-+.++. +..++.. +..++.|++|||++|..+..+|+.|+.+-+|+
T Consensus 520 ~~~~~~rr~s~~~-~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 520 KSWNSVRRMSLMN-NKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred cchhheeEEEEec-cchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 3445667777766 445555554455688888888875 5665553 66789999999999999999999999999999
Q ss_pred EEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCC---cchhhCCCCCCceeEecc
Q 011891 117 EICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE---LPESLGLLSSLEELYLER 192 (475)
Q Consensus 117 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~---lp~~l~~l~~L~~L~L~~ 192 (475)
+|+++++.+..+|.++.++..|.+|++..+..+..++.....+.+|++|.+....... .-..+..+.+|+.|.+..
T Consensus 599 yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 599 YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 9999999999999999999999999999888887777666778899999887765222 233445566666555543
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.2e-11 Score=116.75 Aligned_cols=201 Identities=21% Similarity=0.212 Sum_probs=120.3
Q ss_pred CCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC---cCCCCCCcEEEccccCCcccCcc--cCCCC
Q 011891 15 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE---ISSAGNIEKILLDGTAIEELPSS--IGCLS 89 (475)
Q Consensus 15 ~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~---i~~l~~L~~L~L~~~~i~~lp~~--i~~l~ 89 (475)
++.+|+.+.|.++.. ...+.-.....|++++.|||+++-...-.|- ...+++|+.|+|+.|.+....++ -..++
T Consensus 119 n~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 577777777777532 2222113456778888888887432222222 23678888888888776643332 22567
Q ss_pred CCcEEeeeCCCCCC-ccccccCCCCCCcEEEeeCcC-CccCCcccCCCCCcCEEEcCCCCCCCccc-cCCCCCCCCCEEE
Q 011891 90 RLLELNLGDCKNLK-TLPSSLCKLKSLEEICLTGSA-IEELPSPIECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLY 166 (475)
Q Consensus 90 ~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~L~~c~~l~~l~-~~~~~l~~L~~L~ 166 (475)
.|+.|.|+.|.... .+...+..+++|+.|++.+|. +..-..+..-+..|+.|+|++|..+..-. ...+.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 78888888876442 233334557777888887773 32222233445677777887777544211 2336677777777
Q ss_pred ecCCCCCC--cchh-----hCCCCCCceeEeccCCccccc--hHHhhcCCccccccccc
Q 011891 167 LTDCAITE--LPES-----LGLLSSLEELYLERNNFERIP--ESIIRLSKLSSLLVSYC 216 (475)
Q Consensus 167 L~~~~l~~--lp~~-----l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~l~~c 216 (475)
++.|.+.+ +|+. ...+++|++|++..|++..++ ..+..+.+|+.|.+..+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 77777776 3433 456677788888887776554 23455566666665543
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=7.8e-11 Score=114.90 Aligned_cols=184 Identities=16% Similarity=0.184 Sum_probs=137.1
Q ss_pred cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC---cCCCCCCcEEEccccCCc--ccCcccC
Q 011891 12 SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE---ISSAGNIEKILLDGTAIE--ELPSSIG 86 (475)
Q Consensus 12 ~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~---i~~l~~L~~L~L~~~~i~--~lp~~i~ 86 (475)
-.+.|++++.|||+++-.-.-.+-...+.+|++|+.|+|+.| .+..+-+ -..+++|+.|.|+.|+++ ++-....
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 567899999999998532222233445778999999999995 3443322 237899999999999988 4545566
Q ss_pred CCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCC--cccCCCCCcCEEEcCCCCCCCc-cccC-----CCC
Q 011891 87 CLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP--SPIECLSALCVLDLGDCKSLKS-LKLP-----FDG 158 (475)
Q Consensus 87 ~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~L~~c~~l~~-l~~~-----~~~ 158 (475)
.+++|+.|+|.+|..+.........+..|+.|+|++|.+-..+ ..++.++.|+.|+++.|...+- +|.. ...
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 7899999999998644433333345778999999999998877 5678899999999998874331 1111 256
Q ss_pred CCCCCEEEecCCCCCCcc--hhhCCCCCCceeEeccCCcc
Q 011891 159 LYSLTYLYLTDCAITELP--ESLGLLSSLEELYLERNNFE 196 (475)
Q Consensus 159 l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~L~~n~l~ 196 (475)
+++|+.|++..|++.+++ ..+..+.+|+.|.+..|.+.
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 789999999999998864 34667788888888888764
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=2.2e-10 Score=106.80 Aligned_cols=172 Identities=24% Similarity=0.254 Sum_probs=82.1
Q ss_pred cCCCCCcEEEEeCCCCCCCCcCc-CCCCCCcEEEccccCCcccCcc------------------------cCCCCCCcEE
Q 011891 40 QHLNKLVILNLSGCSKLKSLPEI-SSAGNIEKILLDGTAIEELPSS------------------------IGCLSRLLEL 94 (475)
Q Consensus 40 ~~l~~L~~L~L~~c~~l~~~p~i-~~l~~L~~L~L~~~~i~~lp~~------------------------i~~l~~L~~L 94 (475)
.-+++|+.+.++.|. .+.+-++ ..-|.|+++...++.+...|.- +.....|++|
T Consensus 211 ~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel 289 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTEL 289 (490)
T ss_pred HHhhhhheeeeeccc-hhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhc
Confidence 345667777777763 2333332 2345666776666554422211 1112334455
Q ss_pred eeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCC
Q 011891 95 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE 174 (475)
Q Consensus 95 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~ 174 (475)
+|++| .++.+.+++.-++.++.|+++.|.+..+.. +..+.+|+.||+++|. +..+.....++-+.+.|.|++|.+.+
T Consensus 290 DLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 290 DLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQNKIET 366 (490)
T ss_pred ccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhhhHhh
Confidence 55542 234444444444555555555555554433 4445555555555543 22222222334445555555555444
Q ss_pred cchhhCCCCCCceeEeccCCccccc--hHHhhcCCccccccccc
Q 011891 175 LPESLGLLSSLEELYLERNNFERIP--ESIIRLSKLSSLLVSYC 216 (475)
Q Consensus 175 lp~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~l~~c 216 (475)
+ ..++.+-+|..||+++|+|..+. ..|+++|.|+.|.+.+|
T Consensus 367 L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 367 L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 4 23445555555555555554332 24555555555555554
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.3e-09 Score=96.98 Aligned_cols=56 Identities=34% Similarity=0.332 Sum_probs=20.8
Q ss_pred CCCCCEEEecCCCCCCc--chhhCCCCCCceeEeccCCccccc----hHHhhcCCccccccc
Q 011891 159 LYSLTYLYLTDCAITEL--PESLGLLSSLEELYLERNNFERIP----ESIIRLSKLSSLLVS 214 (475)
Q Consensus 159 l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~L~~n~l~~lp----~~i~~l~~L~~L~l~ 214 (475)
+++|+.|++++|+|.++ -..+..+++|+.|++.+|.++..+ ..+..+|+|+.||-.
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 34455555555544442 123455666666666666664332 134455555555543
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=1.1e-09 Score=97.51 Aligned_cols=115 Identities=23% Similarity=0.367 Sum_probs=26.0
Q ss_pred CcccccccccCCCCCcEEeccCCCCccCCCChhhcc-CCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCc
Q 011891 5 NIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQ-HLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPS 83 (475)
Q Consensus 5 ~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~-~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~ 83 (475)
.|++.+.. .+..+++.|+|.++. ++.+ ..++ .+.+|+.|+|++ +.++.++.+..+++|++|++++|.|+.+..
T Consensus 8 ~i~~~~~~-~n~~~~~~L~L~~n~-I~~I---e~L~~~l~~L~~L~Ls~-N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 8 MIEQIAQY-NNPVKLRELNLRGNQ-ISTI---ENLGATLDKLEVLDLSN-NQITKLEGLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TT-S--S--TT----TT--EEE--SS---S-CH
T ss_pred cccccccc-ccccccccccccccc-cccc---cchhhhhcCCCEEECCC-CCCccccCccChhhhhhcccCCCCCCcccc
Confidence 34444332 233355666666642 2222 2233 355666666666 345555555556666666666666665544
Q ss_pred cc-CCCCCCcEEeeeCCCCCCccc--cccCCCCCCcEEEeeCcCCc
Q 011891 84 SI-GCLSRLLELNLGDCKNLKTLP--SSLCKLKSLEEICLTGSAIE 126 (475)
Q Consensus 84 ~i-~~l~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~L~l~~~~i~ 126 (475)
.+ ..+++|++|++++|. +..+. ..+..+++|+.|++.+|.+.
T Consensus 82 ~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred chHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCccc
Confidence 33 235556666655533 22221 12334455555555555444
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.84 E-value=1e-08 Score=102.00 Aligned_cols=163 Identities=23% Similarity=0.265 Sum_probs=109.3
Q ss_pred cCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCc-CCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCC
Q 011891 85 IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGS-AIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLT 163 (475)
Q Consensus 85 i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~ 163 (475)
+..+.++++|++++| .++.+|. + ..+|++|.++++ .++.+|..+ ..+|+.|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 445788999999998 7888883 2 346999999874 566777655 36899999999977776663 478
Q ss_pred EEEecCCCCCCcchhhCCCCCCceeEeccCCc---cccchHHhhcCCcccccccccccccccCCCccCcceeccccc--c
Q 011891 164 YLYLTDCAITELPESLGLLSSLEELYLERNNF---ERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHC--T 238 (475)
Q Consensus 164 ~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l---~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l~~~L~~L~i~~c--~ 238 (475)
.|++..+....++. -+++|+.|.+.+++. ..+|.. -.++|+.|++++|..+...+.+|.+|+.|.++.+ .
T Consensus 116 ~L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~~~ 190 (426)
T PRK15386 116 SLEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQKT 190 (426)
T ss_pred eEEeCCCCCccccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccccccCcEEEecccccc
Confidence 88887665444321 234677888765431 122211 1268999999999866533458999999998663 4
Q ss_pred cCccccCCCCCcceeEEEecCCccchHH
Q 011891 239 TLESLSGLFSSYKCVFFYLNENFKLDRK 266 (475)
Q Consensus 239 ~L~~l~~~~~~~~~~~l~~~~c~~l~~~ 266 (475)
+++......+.. . .+.|.+|+++...
T Consensus 191 sLeI~~~sLP~n-l-~L~f~n~lkL~~~ 216 (426)
T PRK15386 191 TWNISFEGFPDG-L-DIDLQNSVLLSPD 216 (426)
T ss_pred cccCcccccccc-c-EechhhhcccCHH
Confidence 444333322322 2 7888899887654
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=7.4e-10 Score=103.28 Aligned_cols=184 Identities=22% Similarity=0.304 Sum_probs=137.2
Q ss_pred ccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-------------------------cC
Q 011891 9 LSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-------------------------IS 63 (475)
Q Consensus 9 L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-------------------------i~ 63 (475)
|+-.+.-+++|+.+.++.|.- ..+-++. ..=+.|+.+...+ +.+...|. +.
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~-~~i~~~~--~~kptl~t~~v~~-s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~d 281 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALST-ENIVDIE--LLKPTLQTICVHN-TTIQDVPSLLPETILADPSGSEPSTSNGSALVSAD 281 (490)
T ss_pred cccchHHhhhhheeeeeccch-hheecee--ecCchhheeeeec-ccccccccccchhhhcCccCCCCCccCCceEEecc
Confidence 344556688899999988742 2222211 1124566666654 22222111 11
Q ss_pred CCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEc
Q 011891 64 SAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDL 143 (475)
Q Consensus 64 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L 143 (475)
..+.|++|+|++|.|+.+..++.-.+.++.|+++.|. +..+. .+..+++|+.||+++|.++++-.+-..+.+.+.|.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 3467999999999999999999999999999999965 44444 388899999999999999988777777889999999
Q ss_pred CCCCCCCccccCCCCCCCCCEEEecCCCCCCc--chhhCCCCCCceeEeccCCccccch
Q 011891 144 GDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL--PESLGLLSSLEELYLERNNFERIPE 200 (475)
Q Consensus 144 ~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~L~~n~l~~lp~ 200 (475)
++|. ++++. .++++.+|..||+++|+|.++ -..+++++.|+.+.|.+|.+..+|.
T Consensus 360 a~N~-iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 360 AQNK-IETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhh-Hhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 9986 33333 346788999999999999874 3568999999999999999987764
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.67 E-value=5.7e-08 Score=96.76 Aligned_cols=64 Identities=25% Similarity=0.506 Sum_probs=34.5
Q ss_pred ccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEcccc-CCcccCcccCCCCCCcEEeeeCCCCCCcccc
Q 011891 39 IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGT-AIEELPSSIGCLSRLLELNLGDCKNLKTLPS 107 (475)
Q Consensus 39 ~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~ 107 (475)
+..+++++.|++++| .++.+|.+. .+|++|.++++ .++.+|..+ .++|++|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPVLP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCCCC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 334566666666666 566666322 34666666553 344555433 24566666666655555543
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.59 E-value=1e-08 Score=97.70 Aligned_cols=87 Identities=20% Similarity=0.295 Sum_probs=39.6
Q ss_pred ccCCCCCcEEeccCCCCccCCCC--hhhccCCCCCcEEEEeCCCCCC----CCcC--------cCCCCCCcEEEccccCC
Q 011891 13 VQHHGKLNQIIMAACNIFTKTPN--PSLIQHLNKLVILNLSGCSKLK----SLPE--------ISSAGNIEKILLDGTAI 78 (475)
Q Consensus 13 ~~~l~~L~~L~Ls~~~~l~~~p~--~~~~~~l~~L~~L~L~~c~~l~----~~p~--------i~~l~~L~~L~L~~~~i 78 (475)
...+..++.|+|+++..-++... -..+.+.+.|+..++++- ..+ .+|+ +..+++|++|+|++|.+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 44566677777777654332211 112334445555555441 111 1221 11334556666655544
Q ss_pred c-----ccCcccCCCCCCcEEeeeCCC
Q 011891 79 E-----ELPSSIGCLSRLLELNLGDCK 100 (475)
Q Consensus 79 ~-----~lp~~i~~l~~L~~L~L~~c~ 100 (475)
. .+-.-+..+..|++|.|.+|.
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCC
Confidence 3 112223345555555555553
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.55 E-value=1.5e-07 Score=101.15 Aligned_cols=105 Identities=24% Similarity=0.319 Sum_probs=51.0
Q ss_pred CcEEEeeCcCCc-cCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCC-cchhhCCCCCCceeEecc
Q 011891 115 LEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLER 192 (475)
Q Consensus 115 L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~L~~ 192 (475)
++.|+++++.+. .+|..+..+++|+.|+|++|.....+|..++.+++|+.|+|++|+++. +|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 344455555444 344445555555555555554444444444555555555555555543 455555555555555555
Q ss_pred CCcc-ccchHHhhc-CCcccccccccccc
Q 011891 193 NNFE-RIPESIIRL-SKLSSLLVSYCERL 219 (475)
Q Consensus 193 n~l~-~lp~~i~~l-~~L~~L~l~~c~~l 219 (475)
|++. .+|..+... .++..+++.+|..+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 5543 444444332 23344444444433
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.51 E-value=1.6e-09 Score=105.40 Aligned_cols=108 Identities=21% Similarity=0.203 Sum_probs=63.5
Q ss_pred CCCCcCEEEcCCCCCCCccccC--CCCCCCCCEEEecCCC-CCC--cchhhCCCCCCceeEeccCCcc---ccchHHhhc
Q 011891 134 CLSALCVLDLGDCKSLKSLKLP--FDGLYSLTYLYLTDCA-ITE--LPESLGLLSSLEELYLERNNFE---RIPESIIRL 205 (475)
Q Consensus 134 ~l~~L~~L~L~~c~~l~~l~~~--~~~l~~L~~L~L~~~~-l~~--lp~~l~~l~~L~~L~L~~n~l~---~lp~~i~~l 205 (475)
.+..|+.|+.++|......+.. ..+..+|+.|.+++|+ +++ +-..-.+.+.|+.+++.++... ++-..-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 3566777777777765543322 1456778888887774 443 3333456777888887777542 233333467
Q ss_pred CCccccccccccccccc-----C---CCccCcceecccccccCc
Q 011891 206 SKLSSLLVSYCERLQSL-----P---KLPCNLYWLDAQHCTTLE 241 (475)
Q Consensus 206 ~~L~~L~l~~c~~l~~l-----p---~l~~~L~~L~i~~c~~L~ 241 (475)
+.|+.|.+++|..++.. . .-...+..+.+.+|+.++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 78888888887765543 1 112345555566665544
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.47 E-value=1.8e-08 Score=103.43 Aligned_cols=171 Identities=31% Similarity=0.365 Sum_probs=95.2
Q ss_pred ccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcE
Q 011891 39 IQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEE 117 (475)
Q Consensus 39 ~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~ 117 (475)
+..+++|+.|++.+ +.++.+.. +..+++|++|++++|.|+.+.. +..++.|+.|++.+|. +..+. .+..++.|+.
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL-ISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccc-cchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCc-chhcc-CCccchhhhc
Confidence 45566677777766 45666666 6667777777777777665543 4455567777777643 33333 3444666777
Q ss_pred EEeeCcCCccCCcc-cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCC--CceeEeccCC
Q 011891 118 ICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSS--LEELYLERNN 194 (475)
Q Consensus 118 L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~--L~~L~L~~n~ 194 (475)
+++++|.+..+... +..+.+++.+.+.+|.....- ....+..+..+++..+.++.+- .+..+.. |+.+++++|.
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~-~l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLE-GLNELVMLHLRELYLSGNR 243 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceecc-CcccchhHHHHHHhcccCc
Confidence 77777776655543 455666666666666532211 1112223333355555554431 1122222 6666666666
Q ss_pred ccccchHHhhcCCccccccccc
Q 011891 195 FERIPESIIRLSKLSSLLVSYC 216 (475)
Q Consensus 195 l~~lp~~i~~l~~L~~L~l~~c 216 (475)
+..++..+..+..+..|++.++
T Consensus 244 i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 244 ISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred cccccccccccccccccchhhc
Confidence 6555445555566666666554
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.47 E-value=1.2e-08 Score=97.32 Aligned_cols=206 Identities=22% Similarity=0.273 Sum_probs=147.0
Q ss_pred ccccccCCCCCcEEeccCCCCccC-----CCC-----hhhccCCCCCcEEEEeCCCCCCCCc-C----cCCCCCCcEEEc
Q 011891 9 LSESVQHHGKLNQIIMAACNIFTK-----TPN-----PSLIQHLNKLVILNLSGCSKLKSLP-E----ISSAGNIEKILL 73 (475)
Q Consensus 9 L~~~~~~l~~L~~L~Ls~~~~l~~-----~p~-----~~~~~~l~~L~~L~L~~c~~l~~~p-~----i~~l~~L~~L~L 73 (475)
+-+.+.+.+.|+..++++ ..+. +|. ...+..+++|++||||+|-.-...+ . +.++..|++|+|
T Consensus 50 i~~~L~~~~~L~~v~~sd--~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L 127 (382)
T KOG1909|consen 50 IAKVLASKKELREVNLSD--MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYL 127 (382)
T ss_pred HHHHHhhcccceeeehHh--hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhh
Confidence 345566777899999886 2332 332 1234567799999999964333322 2 457899999999
Q ss_pred cccCCccc--------------CcccCCCCCCcEEeeeCCCCCCc-----cccccCCCCCCcEEEeeCcCCc-----cCC
Q 011891 74 DGTAIEEL--------------PSSIGCLSRLLELNLGDCKNLKT-----LPSSLCKLKSLEEICLTGSAIE-----ELP 129 (475)
Q Consensus 74 ~~~~i~~l--------------p~~i~~l~~L~~L~L~~c~~l~~-----lp~~l~~l~~L~~L~l~~~~i~-----~lp 129 (475)
.+|.+... ..-+..-+.|+++....|. +.. +...+...+.|+.+.+..|.|. .+.
T Consensus 128 ~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ 206 (382)
T KOG1909|consen 128 NNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALA 206 (382)
T ss_pred hcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHH
Confidence 99987521 2234566889999998854 433 3345667789999999999876 234
Q ss_pred cccCCCCCcCEEEcCCCCCCCc----cccCCCCCCCCCEEEecCCCCCC-----cchhh-CCCCCCceeEeccCCcc---
Q 011891 130 SPIECLSALCVLDLGDCKSLKS----LKLPFDGLYSLTYLYLTDCAITE-----LPESL-GLLSSLEELYLERNNFE--- 196 (475)
Q Consensus 130 ~~i~~l~~L~~L~L~~c~~l~~----l~~~~~~l~~L~~L~L~~~~l~~-----lp~~l-~~l~~L~~L~L~~n~l~--- 196 (475)
..+..+++|+.|||.+|..... +...+..++.|+.|++++|.+.. +...+ ...++|+.|.+.+|.++
T Consensus 207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 5678899999999999874332 22334567889999999999886 33333 45789999999999985
Q ss_pred --ccchHHhhcCCcccccccccc
Q 011891 197 --RIPESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 197 --~lp~~i~~l~~L~~L~l~~c~ 217 (475)
.+..++...+.|..|+|++|.
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCccc
Confidence 344567778999999999995
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.45 E-value=3.6e-07 Score=98.31 Aligned_cols=106 Identities=25% Similarity=0.334 Sum_probs=87.9
Q ss_pred CCcEEEccccCCc-ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc-cCCcccCCCCCcCEEEcC
Q 011891 67 NIEKILLDGTAIE-ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLG 144 (475)
Q Consensus 67 ~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~ 144 (475)
.++.|+|+++.+. .+|..+..+++|+.|+|++|.....+|..++.+++|+.|++++|.+. .+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778899988887 67888889999999999998777788888899999999999999888 688889999999999999
Q ss_pred CCCCCCccccCCCC-CCCCCEEEecCCCC
Q 011891 145 DCKSLKSLKLPFDG-LYSLTYLYLTDCAI 172 (475)
Q Consensus 145 ~c~~l~~l~~~~~~-l~~L~~L~L~~~~l 172 (475)
+|.....+|..+.. ..++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 98877778776644 34567788887753
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.31 E-value=3.7e-07 Score=66.61 Aligned_cols=58 Identities=34% Similarity=0.470 Sum_probs=39.3
Q ss_pred CCCCEEEecCCCCCCcc-hhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccc
Q 011891 160 YSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 160 ~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~ 217 (475)
++|+.|++++|+++++| ..+..+++|++|++++|+++.++ ..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35667777777777765 35566777777777777777666 356677777777777663
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.8e-08 Score=94.13 Aligned_cols=151 Identities=19% Similarity=0.189 Sum_probs=72.2
Q ss_pred CCcEEEccccCCc--ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCc-CCccC--CcccCCCCCcCEE
Q 011891 67 NIEKILLDGTAIE--ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGS-AIEEL--PSPIECLSALCVL 141 (475)
Q Consensus 67 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~-~i~~l--p~~i~~l~~L~~L 141 (475)
.|++|||+...|+ .+...+..+.+|+.|.|.+...-..+-..++.-.+|+.|+++.+ ++++. .--+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3566666665554 33333445556666666554433334444555555666666554 33321 1123445555555
Q ss_pred EcCCCCCCCcccc-CC-CCCCCCCEEEecCCC--CC--CcchhhCCCCCCceeEeccCCc-c-ccchHHhhcCCcccccc
Q 011891 142 DLGDCKSLKSLKL-PF-DGLYSLTYLYLTDCA--IT--ELPESLGLLSSLEELYLERNNF-E-RIPESIIRLSKLSSLLV 213 (475)
Q Consensus 142 ~L~~c~~l~~l~~-~~-~~l~~L~~L~L~~~~--l~--~lp~~l~~l~~L~~L~L~~n~l-~-~lp~~i~~l~~L~~L~l 213 (475)
+++.|......-. .. .--+.|+.|+|+++. +. .+......+++|.+|||++|.. + ..-..+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 5555543222100 00 112345555565552 11 1333334556666666666542 2 22234455666666666
Q ss_pred cccc
Q 011891 214 SYCE 217 (475)
Q Consensus 214 ~~c~ 217 (475)
+.|.
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 6664
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1.4e-06 Score=63.56 Aligned_cols=56 Identities=27% Similarity=0.498 Sum_probs=24.2
Q ss_pred CCcEEEccccCCcccCc-ccCCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeCc
Q 011891 67 NIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGS 123 (475)
Q Consensus 67 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~ 123 (475)
+|++|++++|.++.+|. .+..+++|++|++++|. +..++ ..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 34444444444444443 33444444444444432 22222 23344444444444444
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.3e-08 Score=95.15 Aligned_cols=173 Identities=21% Similarity=0.217 Sum_probs=108.4
Q ss_pred CCcEEEEeCCCCCCC--CcC-cCCCCCCcEEEccccCCc-ccCcccCCCCCCcEEeeeCCCCCCccc--cccCCCCCCcE
Q 011891 44 KLVILNLSGCSKLKS--LPE-ISSAGNIEKILLDGTAIE-ELPSSIGCLSRLLELNLGDCKNLKTLP--SSLCKLKSLEE 117 (475)
Q Consensus 44 ~L~~L~L~~c~~l~~--~p~-i~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~ 117 (475)
.|++|||+. ..++. +-. ++.+.+|+.|.|.++.+. .+...+.+-.+|+.|+|+.|..+++.. -.+.+++.|..
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 466777765 33321 111 345667777777777665 344556667778888888877766543 23456777888
Q ss_pred EEeeCcCCcc--CCcccCC-CCCcCEEEcCCCCCCCc---cccCCCCCCCCCEEEecCCC-CCC-cchhhCCCCCCceeE
Q 011891 118 ICLTGSAIEE--LPSPIEC-LSALCVLDLGDCKSLKS---LKLPFDGLYSLTYLYLTDCA-ITE-LPESLGLLSSLEELY 189 (475)
Q Consensus 118 L~l~~~~i~~--lp~~i~~-l~~L~~L~L~~c~~l~~---l~~~~~~l~~L~~L~L~~~~-l~~-lp~~l~~l~~L~~L~ 189 (475)
|+++.|.+.. +...+.+ -.+|+.|+++||...-. +......+++|..|||++|. ++. ....+..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 8888776541 1111111 24678888888763211 11112578889999999985 333 556678899999999
Q ss_pred eccCCcc--ccchHHhhcCCcccccccccc
Q 011891 190 LERNNFE--RIPESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 190 L~~n~l~--~lp~~i~~l~~L~~L~l~~c~ 217 (475)
+++|-.- ..--.+...++|.+|++.+|-
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 9998431 111135667899999999884
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.17 E-value=2.6e-07 Score=94.86 Aligned_cols=169 Identities=28% Similarity=0.342 Sum_probs=95.0
Q ss_pred CCCCcEEEEeCCCCCCC-CcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEe
Q 011891 42 LNKLVILNLSGCSKLKS-LPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICL 120 (475)
Q Consensus 42 l~~L~~L~L~~c~~l~~-~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l 120 (475)
+..++.+++..+ .+.. ...+..+.+|+.|++.+|.|+.+...+..+++|++|++++|. ++.+. .+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-ccccc-chhhccchhhhee
Confidence 344555555552 3333 223556677777777777777666556667777777777743 44443 3555666777777
Q ss_pred eCcCCccCCcccCCCCCcCEEEcCCCCCCCccc-cCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccc
Q 011891 121 TGSAIEELPSPIECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP 199 (475)
Q Consensus 121 ~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~-~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp 199 (475)
.+|.|+.+. .+..+..|+.+++++|.....-+ . ...+.+|+.+.+.++.+..+. .+..+..+..+++..|.++.+-
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceecc
Confidence 777776553 23336677777777766332211 1 345666777777777666542 2233444444466666665332
Q ss_pred hHHhhcC--Ccccccccccc
Q 011891 200 ESIIRLS--KLSSLLVSYCE 217 (475)
Q Consensus 200 ~~i~~l~--~L~~L~l~~c~ 217 (475)
.+..+. .|+.+++.++.
T Consensus 225 -~l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 225 -GLNELVMLHLRELYLSGNR 243 (414)
T ss_pred -CcccchhHHHHHHhcccCc
Confidence 112222 26667676654
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.16 E-value=4e-08 Score=95.76 Aligned_cols=229 Identities=20% Similarity=0.288 Sum_probs=152.2
Q ss_pred cccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--c-CCCCCCcEEEccccC-Cc--cc
Q 011891 8 QLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--I-SSAGNIEKILLDGTA-IE--EL 81 (475)
Q Consensus 8 ~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i-~~l~~L~~L~L~~~~-i~--~l 81 (475)
.+-....+++++++|++.+|.++++....+....+++|+.|+|..|..++...- + ..+++|++|+++.+. |. .+
T Consensus 155 slrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv 234 (483)
T KOG4341|consen 155 SLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGV 234 (483)
T ss_pred hhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcc
Confidence 344446689999999999999888776656667899999999999988876432 2 378899999998863 33 23
Q ss_pred CcccCCCCCCcEEeeeCCCCC--------------------------Cccc--cccCCCCCCcEEEeeCcCC-cc--CCc
Q 011891 82 PSSIGCLSRLLELNLGDCKNL--------------------------KTLP--SSLCKLKSLEEICLTGSAI-EE--LPS 130 (475)
Q Consensus 82 p~~i~~l~~L~~L~L~~c~~l--------------------------~~lp--~~l~~l~~L~~L~l~~~~i-~~--lp~ 130 (475)
......+..++.+.++||..+ +... ..-..+..|+.|+.+++.- +. +-.
T Consensus 235 ~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a 314 (483)
T KOG4341|consen 235 QALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA 314 (483)
T ss_pred hHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH
Confidence 233344555566655555432 2111 0112356677777776532 21 112
Q ss_pred ccCCCCCcCEEEcCCCCCCCccccCC--CCCCCCCEEEecCCCCCC---cchhhCCCCCCceeEeccCCcc-c-----cc
Q 011891 131 PIECLSALCVLDLGDCKSLKSLKLPF--DGLYSLTYLYLTDCAITE---LPESLGLLSSLEELYLERNNFE-R-----IP 199 (475)
Q Consensus 131 ~i~~l~~L~~L~L~~c~~l~~l~~~~--~~l~~L~~L~L~~~~l~~---lp~~l~~l~~L~~L~L~~n~l~-~-----lp 199 (475)
...+..+|+.|.+++|+.+.+..... .+++.|+.+++.+|.... +-..-.+++.|+.|.+++|... . +.
T Consensus 315 Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~ 394 (483)
T KOG4341|consen 315 LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS 394 (483)
T ss_pred HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence 24567899999999999877654443 678899999999996543 4444568899999999998642 1 22
Q ss_pred hHHhhcCCcccccccccccccccCCCccCcceecccccccCccc
Q 011891 200 ESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESL 243 (475)
Q Consensus 200 ~~i~~l~~L~~L~l~~c~~l~~lp~l~~~L~~L~i~~c~~L~~l 243 (475)
..-.....|..+.+++|+.+..- .|++| ..|+.|+.+
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~-----~Le~l--~~c~~Leri 431 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDA-----TLEHL--SICRNLERI 431 (483)
T ss_pred hccccccccceeeecCCCCchHH-----HHHHH--hhCccccee
Confidence 23345678999999999765542 23433 457777664
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.10 E-value=1.1e-07 Score=98.32 Aligned_cols=16 Identities=38% Similarity=0.731 Sum_probs=10.4
Q ss_pred ccCCCCCcEEEEeCCC
Q 011891 39 IQHLNKLVILNLSGCS 54 (475)
Q Consensus 39 ~~~l~~L~~L~L~~c~ 54 (475)
+..+++|++|.|.||.
T Consensus 105 ifpF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCD 120 (1096)
T ss_pred eccccceeeEEecCcc
Confidence 4456677777777764
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.09 E-value=5.6e-08 Score=100.58 Aligned_cols=176 Identities=26% Similarity=0.265 Sum_probs=113.9
Q ss_pred ccccCCCCCcEEeccCCCCccCCCChhhccCCC-CCcEEEEeCCCCCCCC--------cCcC---CCCCCcEEEccccCC
Q 011891 11 ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLN-KLVILNLSGCSKLKSL--------PEIS---SAGNIEKILLDGTAI 78 (475)
Q Consensus 11 ~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~-~L~~L~L~~c~~l~~~--------p~i~---~l~~L~~L~L~~~~i 78 (475)
-.+..++.||+|.|.+|..-+. .++..++ .|+.|.-. +++..+ .++. -...|...+.++|.+
T Consensus 103 i~ifpF~sLr~LElrg~~L~~~----~GL~~lr~qLe~LIC~--~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDLSTA----KGLQELRHQLEKLICH--NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL 176 (1096)
T ss_pred ceeccccceeeEEecCcchhhh----hhhHHHHHhhhhhhhh--ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH
Confidence 3466788999999998854331 1222111 23333221 222222 1122 124567777888888
Q ss_pred cccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCC
Q 011891 79 EELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 158 (475)
Q Consensus 79 ~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~ 158 (475)
+.+..++.-++.|+.|+|+.|+. +... .+..++.|++|||++|.++.+|.--..-.+|+.|.+++|. ++.+- .+.+
T Consensus 177 ~~mD~SLqll~ale~LnLshNk~-~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~-l~tL~-gie~ 252 (1096)
T KOG1859|consen 177 VLMDESLQLLPALESLNLSHNKF-TKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA-LTTLR-GIEN 252 (1096)
T ss_pred HhHHHHHHHHHHhhhhccchhhh-hhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccH-HHhhh-hHHh
Confidence 88888888889999999998653 4443 6778888999999999888887632222348888888776 33332 3457
Q ss_pred CCCCCEEEecCCCCCCc--chhhCCCCCCceeEeccCCcc
Q 011891 159 LYSLTYLYLTDCAITEL--PESLGLLSSLEELYLERNNFE 196 (475)
Q Consensus 159 l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~L~~n~l~ 196 (475)
+.+|+.||+++|-+.+. ...+..+..|..|.|.||.+-
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 78888888888877662 234566778888888888764
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=9.6e-06 Score=54.69 Aligned_cols=40 Identities=38% Similarity=0.475 Sum_probs=30.4
Q ss_pred CCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccc
Q 011891 160 YSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP 199 (475)
Q Consensus 160 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp 199 (475)
++|+.|++++|+++++|..++.+++|+.|++++|+++.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3578888888888888777888888888888888887665
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=2e-06 Score=80.68 Aligned_cols=160 Identities=20% Similarity=0.215 Sum_probs=92.3
Q ss_pred CCCCCcEEEccccCCc---ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc--cCCcccCCCCCc
Q 011891 64 SAGNIEKILLDGTAIE---ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE--ELPSPIECLSAL 138 (475)
Q Consensus 64 ~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L 138 (475)
..+.+++|+|.+|.|. ++...+.+++.|++|+|+.|..-..+-..-..+.+|++|.+.|+.+. .+.+.+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4566666677666665 34445556677777777654322221111124456666666666544 444455556666
Q ss_pred CEEEcCCCCC---------------------------CCcccc--CCCCCCCCCEEEecCCCCCCc--chhhCCCCCCce
Q 011891 139 CVLDLGDCKS---------------------------LKSLKL--PFDGLYSLTYLYLTDCAITEL--PESLGLLSSLEE 187 (475)
Q Consensus 139 ~~L~L~~c~~---------------------------l~~l~~--~~~~l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~ 187 (475)
+.|+++.|.. ...... ...-++++..+-+..|.+.+. ......++.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 6666655521 000000 002346677777777776653 233445677778
Q ss_pred eEeccCCccccc--hHHhhcCCcccccccccccccccC
Q 011891 188 LYLERNNFERIP--ESIIRLSKLSSLLVSYCERLQSLP 223 (475)
Q Consensus 188 L~L~~n~l~~lp--~~i~~l~~L~~L~l~~c~~l~~lp 223 (475)
|+|+.+++.++. ..+..++.|..|.+.+++....+.
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 888888886554 356778888888888887665554
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=8.9e-06 Score=87.72 Aligned_cols=109 Identities=19% Similarity=0.264 Sum_probs=50.0
Q ss_pred CCCCCcEEEccccCCc--ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCC--cccCCCCCcC
Q 011891 64 SAGNIEKILLDGTAIE--ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP--SPIECLSALC 139 (475)
Q Consensus 64 ~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~ 139 (475)
.+|.|+.|.+.+-.+. ++-....++++|..||++++ +++.+ .+++++++|+.|.+.+-.+..-. ..+..|++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 3455555555443322 22223334455555555552 23333 34555555555555444433221 1234455555
Q ss_pred EEEcCCCCCCCcc------ccCCCCCCCCCEEEecCCCCCC
Q 011891 140 VLDLGDCKSLKSL------KLPFDGLYSLTYLYLTDCAITE 174 (475)
Q Consensus 140 ~L~L~~c~~l~~l------~~~~~~l~~L~~L~L~~~~l~~ 174 (475)
.||++.-.....- -.....+|.|+.||.+++.+.+
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 5555544322211 0111346677777777776654
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.82 E-value=4.2e-06 Score=90.22 Aligned_cols=151 Identities=19% Similarity=0.219 Sum_probs=99.2
Q ss_pred CCCCcEEEccccCC-c-ccCcccC-CCCCCcEEeeeCCCCC-CccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCE
Q 011891 65 AGNIEKILLDGTAI-E-ELPSSIG-CLSRLLELNLGDCKNL-KTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCV 140 (475)
Q Consensus 65 l~~L~~L~L~~~~i-~-~lp~~i~-~l~~L~~L~L~~c~~l-~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 140 (475)
-.+|++|++++... . .-|..++ .||+|++|.+.+-... .++-.-..++++|..||+++|+++.+ .+++++++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 46888888887532 2 2333343 4789999999873321 12334456788999999999999888 78888999999
Q ss_pred EEcCCCCCCCcc-ccCCCCCCCCCEEEecCCCCCCcc-------hhhCCCCCCceeEeccCCcc--ccchHHhhcCCccc
Q 011891 141 LDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITELP-------ESLGLLSSLEELYLERNNFE--RIPESIIRLSKLSS 210 (475)
Q Consensus 141 L~L~~c~~l~~l-~~~~~~l~~L~~L~L~~~~l~~lp-------~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~ 210 (475)
|.+.+-...... -..+-++++|+.||+|.......+ +.-..+++|+.||.+++.+. .+...+..-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 888764422200 012346888999999888655433 22345889999999988774 23334444566666
Q ss_pred cccccc
Q 011891 211 LLVSYC 216 (475)
Q Consensus 211 L~l~~c 216 (475)
+.+-+|
T Consensus 280 i~~~~~ 285 (699)
T KOG3665|consen 280 IAALDC 285 (699)
T ss_pred hhhhhh
Confidence 654443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.68 E-value=3.2e-05 Score=52.17 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=34.0
Q ss_pred CCCceeEeccCCccccchHHhhcCCcccccccccccccccCC
Q 011891 183 SSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK 224 (475)
Q Consensus 183 ~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~ 224 (475)
++|++|++++|+|+.+|..+++|++|+.|++++| .+++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4799999999999999988999999999999999 4555543
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=1.4e-05 Score=75.06 Aligned_cols=109 Identities=19% Similarity=0.207 Sum_probs=69.6
Q ss_pred CCCCcEEEccccCCcccCc--cc-CCCCCCcEEeeeCCCCCC--ccccccCCCCCCcEEEeeCcCCccCCccc-CCCCCc
Q 011891 65 AGNIEKILLDGTAIEELPS--SI-GCLSRLLELNLGDCKNLK--TLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSAL 138 (475)
Q Consensus 65 l~~L~~L~L~~~~i~~lp~--~i-~~l~~L~~L~L~~c~~l~--~lp~~l~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L 138 (475)
+.-++.|.+.++.|...-. .+ ...+.++.|+|.+|.... ++...+.+++.|++|+++.|.+.....++ ..+.+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 3445566666666553221 12 246789999999975432 34445678999999999999877544443 467789
Q ss_pred CEEEcCCCCCCCc-cccCCCCCCCCCEEEecCCCCC
Q 011891 139 CVLDLGDCKSLKS-LKLPFDGLYSLTYLYLTDCAIT 173 (475)
Q Consensus 139 ~~L~L~~c~~l~~-l~~~~~~l~~L~~L~L~~~~l~ 173 (475)
+.|-|.|...... .......+|.++.|.++.|++.
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 9999987552111 1122356677778888777443
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.54 E-value=3.7e-06 Score=70.26 Aligned_cols=111 Identities=18% Similarity=0.301 Sum_probs=74.6
Q ss_pred CCcEEeccCCCCccCCCC-hhhccCCCCCcEEEEeCCCCCCCCcC-cC-CCCCCcEEEccccCCcccCcccCCCCCCcEE
Q 011891 18 KLNQIIMAACNIFTKTPN-PSLIQHLNKLVILNLSGCSKLKSLPE-IS-SAGNIEKILLDGTAIEELPSSIGCLSRLLEL 94 (475)
Q Consensus 18 ~L~~L~Ls~~~~l~~~p~-~~~~~~l~~L~~L~L~~c~~l~~~p~-i~-~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 94 (475)
.+-.++|+.|.. ..+++ ...+.....|+..+|++ +.++++|. +. ..+.++.|++++|.|..+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchh-hHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 345567777643 22222 22344556677778887 56777776 43 5567788888888888888877788888888
Q ss_pred eeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc
Q 011891 95 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP 131 (475)
Q Consensus 95 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~ 131 (475)
+++.|+ +...|..+..+.+|-.|+..++.+.++|..
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 887753 455666666677777777777777766654
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.42 E-value=1.6e-05 Score=66.55 Aligned_cols=59 Identities=29% Similarity=0.334 Sum_probs=45.4
Q ss_pred CCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCccccccccc
Q 011891 158 GLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC 216 (475)
Q Consensus 158 ~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c 216 (475)
..+.++.|++++|.+.++|..+..++.|+.|+++.|.+...|..+..+.+|-.|+..++
T Consensus 75 kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred ccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 34467778888888888888888888888888888888877777777777777777665
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.31 E-value=2.7e-05 Score=81.20 Aligned_cols=108 Identities=30% Similarity=0.396 Sum_probs=55.1
Q ss_pred CCCCcEEEEeCCCCCCCC---cCcCCCCCCcEEEcccc--CCcc----cCcccCCCCCCcEEeeeCCCCCCccc-ccc-C
Q 011891 42 LNKLVILNLSGCSKLKSL---PEISSAGNIEKILLDGT--AIEE----LPSSIGCLSRLLELNLGDCKNLKTLP-SSL-C 110 (475)
Q Consensus 42 l~~L~~L~L~~c~~l~~~---p~i~~l~~L~~L~L~~~--~i~~----lp~~i~~l~~L~~L~L~~c~~l~~lp-~~l-~ 110 (475)
++.|+.|.+.+|..+... +....+++|+.|+++++ .+.. .......+.+|+.|+++.|..++..- ..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 556666666666555542 22335666666666552 1111 11123345666677776665433221 111 1
Q ss_pred CCCCCcEEEeeCcC-Cc--cCCcccCCCCCcCEEEcCCCCCC
Q 011891 111 KLKSLEEICLTGSA-IE--ELPSPIECLSALCVLDLGDCKSL 149 (475)
Q Consensus 111 ~l~~L~~L~l~~~~-i~--~lp~~i~~l~~L~~L~L~~c~~l 149 (475)
.+++|++|.+.++. ++ .+-.....+++|++|++++|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 25667777655554 33 22223345566777777777665
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.25 E-value=0.00012 Score=68.15 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=18.2
Q ss_pred CCCCCcEEeeeCCCCCCccccc----cCCCCCCcEEEeeCcCC
Q 011891 87 CLSRLLELNLGDCKNLKTLPSS----LCKLKSLEEICLTGSAI 125 (475)
Q Consensus 87 ~l~~L~~L~L~~c~~l~~lp~~----l~~l~~L~~L~l~~~~i 125 (475)
+|++|+..+|++|-.-...|+. |+..+.|++|.+.+|.+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 4455555555554443333322 33444455555555543
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.13 E-value=9.9e-05 Score=76.93 Aligned_cols=111 Identities=25% Similarity=0.360 Sum_probs=76.0
Q ss_pred CCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCC-CCCCCCcC-----cCCCCCCcEEEccccC-Ccc--cCccc
Q 011891 15 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGC-SKLKSLPE-----ISSAGNIEKILLDGTA-IEE--LPSSI 85 (475)
Q Consensus 15 ~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c-~~l~~~p~-----i~~l~~L~~L~L~~~~-i~~--lp~~i 85 (475)
.++.|+.|.+.+|..++..........++.|+.|++++| ......+. ...+++|+.|+++++. ++. +....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 478899999999888776543345677889999999883 33333331 2356888999998876 542 22222
Q ss_pred CCCCCCcEEeeeCCCCCCc--cccccCCCCCCcEEEeeCcCC
Q 011891 86 GCLSRLLELNLGDCKNLKT--LPSSLCKLKSLEEICLTGSAI 125 (475)
Q Consensus 86 ~~l~~L~~L~L~~c~~l~~--lp~~l~~l~~L~~L~l~~~~i 125 (475)
..+++|++|.+.+|..++. +-.....++.|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 3478999999888876432 333345678899999987754
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.03 E-value=0.0013 Score=58.90 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=18.8
Q ss_pred CCCCCCEEEecCCCCCCcc----hhhCCCCCCceeEeccC
Q 011891 158 GLYSLTYLYLTDCAITELP----ESLGLLSSLEELYLERN 193 (475)
Q Consensus 158 ~l~~L~~L~L~~~~l~~lp----~~l~~l~~L~~L~L~~n 193 (475)
.++.|+.|.+-+|+++.-. -.+..+++|+.||..+=
T Consensus 111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 3445555555555544421 12455667777776553
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.99 E-value=0.0014 Score=58.79 Aligned_cols=54 Identities=19% Similarity=0.386 Sum_probs=28.6
Q ss_pred CCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCC-CCCCcEEeeeC
Q 011891 44 KLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGC-LSRLLELNLGD 98 (475)
Q Consensus 44 ~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~-l~~L~~L~L~~ 98 (475)
....+||++ +.+..++.+..++.|..|.|.+|+|+.+...+.. +++|..|.|.+
T Consensus 43 ~~d~iDLtd-Ndl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 43 QFDAIDLTD-NDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccceecccc-cchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 344555655 3455555555556666666666666555444332 34455555555
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.79 E-value=0.00047 Score=64.34 Aligned_cols=154 Identities=19% Similarity=0.168 Sum_probs=97.3
Q ss_pred CCCCCcEEEccccCCc-----ccCcccCCCCCCcEEeeeCCC----------CCCccccccCCCCCCcEEEeeCcCCc-c
Q 011891 64 SAGNIEKILLDGTAIE-----ELPSSIGCLSRLLELNLGDCK----------NLKTLPSSLCKLKSLEEICLTGSAIE-E 127 (475)
Q Consensus 64 ~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~c~----------~l~~lp~~l~~l~~L~~L~l~~~~i~-~ 127 (475)
.+..++.++|++|.|. .+...|.+-.+|+..++++-. ++.-+...+..++.|+..+++.|.+. +
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3455555666655543 233445555666666666521 11122345678999999999999887 4
Q ss_pred CCc----ccCCCCCcCEEEcCCCCCCCcccc-------------CCCCCCCCCEEEecCCCCCCcch-----hhCCCCCC
Q 011891 128 LPS----PIECLSALCVLDLGDCKSLKSLKL-------------PFDGLYSLTYLYLTDCAITELPE-----SLGLLSSL 185 (475)
Q Consensus 128 lp~----~i~~l~~L~~L~L~~c~~l~~l~~-------------~~~~l~~L~~L~L~~~~l~~lp~-----~l~~l~~L 185 (475)
.|. -|+.-+.|.+|.+++|..-..-.. ....-|.|+......|++...+. .+..-.+|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 443 467788999999998873211110 11345779999998888876433 23333588
Q ss_pred ceeEeccCCcc--c---c-chHHhhcCCcccccccccc
Q 011891 186 EELYLERNNFE--R---I-PESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 186 ~~L~L~~n~l~--~---l-p~~i~~l~~L~~L~l~~c~ 217 (475)
+.+.+..|.|. . + -..+..+.+|+.|+|.+|.
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 99999999874 1 1 1234567888888888774
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.00023 Score=66.57 Aligned_cols=83 Identities=25% Similarity=0.332 Sum_probs=61.8
Q ss_pred CCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccc--hHHhhcCCccccc
Q 011891 135 LSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP--ESIIRLSKLSSLL 212 (475)
Q Consensus 135 l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~ 212 (475)
+.+.++|+..||. +.++.. ...|+.|+.|.|+-|.|+.+. .+..+++|++|+|..|.|.++. .-++++++|+.|+
T Consensus 18 l~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCC-ccHHHH-HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3445566666665 333322 257888999999999999873 4678999999999999988775 3568899999999
Q ss_pred cccccccc
Q 011891 213 VSYCERLQ 220 (475)
Q Consensus 213 l~~c~~l~ 220 (475)
|..|+--.
T Consensus 95 L~ENPCc~ 102 (388)
T KOG2123|consen 95 LDENPCCG 102 (388)
T ss_pred hccCCccc
Confidence 98876443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.00017 Score=67.40 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=59.3
Q ss_pred CCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCc--ccCCCCCCcE
Q 011891 16 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPS--SIGCLSRLLE 93 (475)
Q Consensus 16 l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~ 93 (475)
+.+.+.|+.=+| .+.|++....++.|++|.|+- ++++++..+..+++|++|+|..|.|..+.. -+.++++|+.
T Consensus 18 l~~vkKLNcwg~----~L~DIsic~kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGC----GLDDISICEKMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCC----CccHHHHHHhcccceeEEeec-cccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 455666666665 233445566777777777776 456666666777777777777777765543 3456666666
Q ss_pred EeeeCCCCCCcccc-----ccCCCCCCcEEE
Q 011891 94 LNLGDCKNLKTLPS-----SLCKLKSLEEIC 119 (475)
Q Consensus 94 L~L~~c~~l~~lp~-----~l~~l~~L~~L~ 119 (475)
|-|..|+--..-+. .+..|++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 66666554433322 233455555554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.32 E-value=0.0036 Score=58.27 Aligned_cols=82 Identities=26% Similarity=0.250 Sum_probs=54.7
Q ss_pred CCCCCCEEEecCC--CCCC-cchhhCCCCCCceeEeccCCcc---ccchHHhhcCCcccccccccccccccC-------C
Q 011891 158 GLYSLTYLYLTDC--AITE-LPESLGLLSSLEELYLERNNFE---RIPESIIRLSKLSSLLVSYCERLQSLP-------K 224 (475)
Q Consensus 158 ~l~~L~~L~L~~~--~l~~-lp~~l~~l~~L~~L~L~~n~l~---~lp~~i~~l~~L~~L~l~~c~~l~~lp-------~ 224 (475)
.+++|+.|.++.| .+.. ++.....+++|++|++++|++. +++ .+..+.+|..|++.+|.-.+ +- .
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ 140 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTN-LDDYREKVFL 140 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccc-cccHHHHHHH
Confidence 5677888888888 4443 4444556688888888888875 333 46778888899998886444 21 2
Q ss_pred CccCcceecccccccCc
Q 011891 225 LPCNLYWLDAQHCTTLE 241 (475)
Q Consensus 225 l~~~L~~L~i~~c~~L~ 241 (475)
+.++|++|+-.++..=+
T Consensus 141 ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 141 LLPSLKYLDGCDVDGEE 157 (260)
T ss_pred HhhhhccccccccCCcc
Confidence 45667777665554433
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.67 E-value=0.01 Score=55.27 Aligned_cols=86 Identities=22% Similarity=0.204 Sum_probs=51.5
Q ss_pred CCCcCEEEcCCC--CCCCccccCCCCCCCCCEEEecCCCCCCc--chhhCCCCCCceeEeccCCccccc----hHHhhcC
Q 011891 135 LSALCVLDLGDC--KSLKSLKLPFDGLYSLTYLYLTDCAITEL--PESLGLLSSLEELYLERNNFERIP----ESIIRLS 206 (475)
Q Consensus 135 l~~L~~L~L~~c--~~l~~l~~~~~~l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~L~~n~l~~lp----~~i~~l~ 206 (475)
+++|+.|.++.| .....++.....+++|++|++++|++..+ -..+..+.+|..|++..|..+.+- ..+.-++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 455566666655 33333343445557777777777776652 123456677788888887654332 2345578
Q ss_pred Cccccccccccccc
Q 011891 207 KLSSLLVSYCERLQ 220 (475)
Q Consensus 207 ~L~~L~l~~c~~l~ 220 (475)
+|++|+-..+..-.
T Consensus 144 ~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 144 SLKYLDGCDVDGEE 157 (260)
T ss_pred hhccccccccCCcc
Confidence 88888877665433
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.10 E-value=0.0086 Score=33.64 Aligned_cols=18 Identities=50% Similarity=0.623 Sum_probs=9.9
Q ss_pred CceeEeccCCccccchHH
Q 011891 185 LEELYLERNNFERIPESI 202 (475)
Q Consensus 185 L~~L~L~~n~l~~lp~~i 202 (475)
|++|+|++|+++.+|..+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 555555555555555443
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.88 E-value=0.075 Score=44.43 Aligned_cols=79 Identities=14% Similarity=0.276 Sum_probs=29.2
Q ss_pred ccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCcccCc-ccCCCC
Q 011891 13 VQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPS-SIGCLS 89 (475)
Q Consensus 13 ~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp~-~i~~l~ 89 (475)
+..+++|+.+.+.. .++.++. ..+.++++|+.+.+.+ .+..++. +..+++|+.+.+.. .+..++. .+..++
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~-~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGE-NAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-T-TTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HhCCCCCCEEEECC--CeeEeCh-hhcccccccccccccc--cccccceeeeecccccccccccc-cccccccccccccc
Confidence 34455555555542 2334433 2344555555555554 2444443 33444555555543 3333322 223344
Q ss_pred CCcEEeee
Q 011891 90 RLLELNLG 97 (475)
Q Consensus 90 ~L~~L~L~ 97 (475)
+|+.+.+.
T Consensus 82 ~l~~i~~~ 89 (129)
T PF13306_consen 82 NLKNIDIP 89 (129)
T ss_dssp TECEEEET
T ss_pred cccccccC
Confidence 55555543
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.50 E-value=0.15 Score=42.51 Aligned_cols=101 Identities=15% Similarity=0.276 Sum_probs=58.3
Q ss_pred hccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCcccCc-ccCCCCCCcEEeeeCCCCCCcccc-ccCCCC
Q 011891 38 LIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPS-SLCKLK 113 (475)
Q Consensus 38 ~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~l~~l~ 113 (475)
.+.++.+|+.+.+.. .++.++. +..+++|+.+.+..+ +..++. .+..+++|+.+.+.+ .+..++. .+..++
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccc
Confidence 456778899998874 4667766 668889999999875 776655 566777899999965 4445544 355689
Q ss_pred CCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCC
Q 011891 114 SLEEICLTGSAIEELPS-PIECLSALCVLDLGD 145 (475)
Q Consensus 114 ~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~ 145 (475)
+|+.+.+..+ +..++. .+.+. +|+.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 9999999764 655544 35555 888887764
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.43 E-value=0.015 Score=32.62 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=7.5
Q ss_pred CcEEEccccCCcccCcc
Q 011891 68 IEKILLDGTAIEELPSS 84 (475)
Q Consensus 68 L~~L~L~~~~i~~lp~~ 84 (475)
|++|+|++|.++.+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444443
No 73
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=94.25 E-value=0.018 Score=31.35 Aligned_cols=14 Identities=50% Similarity=0.719 Sum_probs=12.7
Q ss_pred CCCCCccccccccc
Q 011891 1 MPHSNIEQLSESVQ 14 (475)
Q Consensus 1 l~~s~l~~L~~~~~ 14 (475)
|++|++++||+|++
T Consensus 7 m~~S~lekLW~G~k 20 (20)
T PF07725_consen 7 MPYSKLEKLWEGVK 20 (20)
T ss_pred CCCCChHHhcCccC
Confidence 78999999999875
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.80 E-value=0.042 Score=28.69 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=4.3
Q ss_pred CceeEeccCCccc
Q 011891 185 LEELYLERNNFER 197 (475)
Q Consensus 185 L~~L~L~~n~l~~ 197 (475)
|+.|+|++|++++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444433
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.30 E-value=0.068 Score=27.90 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=9.1
Q ss_pred CCCCEEEecCCCCCCcc
Q 011891 160 YSLTYLYLTDCAITELP 176 (475)
Q Consensus 160 ~~L~~L~L~~~~l~~lp 176 (475)
++|+.|+|++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35777777777776654
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.95 E-value=0.044 Score=49.31 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=51.0
Q ss_pred CCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC--cCcC-CCCCCcEEEcccc-CCccc-CcccCCCCCC
Q 011891 17 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL--PEIS-SAGNIEKILLDGT-AIEEL-PSSIGCLSRL 91 (475)
Q Consensus 17 ~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~--p~i~-~l~~L~~L~L~~~-~i~~l-p~~i~~l~~L 91 (475)
..++.+|-+++....+ .+..+.+++.++.|.+.+|..+... ..++ -.++|+.|+|++| +|++- -..+..+++|
T Consensus 101 ~~IeaVDAsds~I~~e--Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYE--GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred ceEEEEecCCchHHHH--HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 3466777777543222 2344667777888888888776652 2233 4578888888876 56632 2245677888
Q ss_pred cEEeeeCC
Q 011891 92 LELNLGDC 99 (475)
Q Consensus 92 ~~L~L~~c 99 (475)
+.|.+.+-
T Consensus 179 r~L~l~~l 186 (221)
T KOG3864|consen 179 RRLHLYDL 186 (221)
T ss_pred HHHHhcCc
Confidence 88887763
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.56 E-value=0.051 Score=48.94 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=21.0
Q ss_pred CCCCCceeEeccCC-cccc-chHHhhcCCcccccccccc
Q 011891 181 LLSSLEELYLERNN-FERI-PESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 181 ~l~~L~~L~L~~n~-l~~l-p~~i~~l~~L~~L~l~~c~ 217 (475)
..++|+.|+|++|. |++- -..+.++++|+.|.|.+-+
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 34556666666653 4321 1456667777777776544
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.98 E-value=0.0043 Score=64.39 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=15.5
Q ss_pred CCCceeEeccCCcc-----ccchHHhhcCCccccccccc
Q 011891 183 SSLEELYLERNNFE-----RIPESIIRLSKLSSLLVSYC 216 (475)
Q Consensus 183 ~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~l~~c 216 (475)
..++.++++.|.|+ .+...+..++.++.|.++++
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence 34455555555442 23333444445555555444
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.92 E-value=0.36 Score=28.04 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=13.6
Q ss_pred CCCCceeEeccCCccccchH
Q 011891 182 LSSLEELYLERNNFERIPES 201 (475)
Q Consensus 182 l~~L~~L~L~~n~l~~lp~~ 201 (475)
+++|+.|+|++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.92 E-value=0.36 Score=28.04 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=13.6
Q ss_pred CCCCceeEeccCCccccchH
Q 011891 182 LSSLEELYLERNNFERIPES 201 (475)
Q Consensus 182 l~~L~~L~L~~n~l~~lp~~ 201 (475)
+++|+.|+|++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.58 E-value=0.62 Score=26.99 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=14.0
Q ss_pred CCCCcEEEccccCCcccCcc
Q 011891 65 AGNIEKILLDGTAIEELPSS 84 (475)
Q Consensus 65 l~~L~~L~L~~~~i~~lp~~ 84 (475)
+++|+.|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777664
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.58 E-value=0.62 Score=26.99 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=14.0
Q ss_pred CCCCcEEEccccCCcccCcc
Q 011891 65 AGNIEKILLDGTAIEELPSS 84 (475)
Q Consensus 65 l~~L~~L~L~~~~i~~lp~~ 84 (475)
+++|+.|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777664
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.00 E-value=0.032 Score=51.31 Aligned_cols=84 Identities=23% Similarity=0.173 Sum_probs=59.3
Q ss_pred CCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccc
Q 011891 134 CLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLV 213 (475)
Q Consensus 134 ~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l 213 (475)
.....+.||++.+. +..+...++.+..|..|+++.+.+.-+|.+.+.+..+..+++..|+.+..|.+.++.++++++++
T Consensus 40 ~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 34445555555544 22233344455667778888888877888888888888888888888888888888888888888
Q ss_pred ccccc
Q 011891 214 SYCER 218 (475)
Q Consensus 214 ~~c~~ 218 (475)
..++.
T Consensus 119 k~~~~ 123 (326)
T KOG0473|consen 119 KKTEF 123 (326)
T ss_pred ccCcc
Confidence 77653
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.43 E-value=0.051 Score=49.97 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=34.4
Q ss_pred cCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEE
Q 011891 62 ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVL 141 (475)
Q Consensus 62 i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 141 (475)
+......+.||++.+++..+-..+.-++.|..|+++. +.+..+|...+.+..++.+++..|..+..|.+....++++.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 3344455555555554444443343444444444443 223344444444444444444444444444433333333333
Q ss_pred E
Q 011891 142 D 142 (475)
Q Consensus 142 ~ 142 (475)
+
T Consensus 117 e 117 (326)
T KOG0473|consen 117 E 117 (326)
T ss_pred h
Confidence 3
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.66 E-value=1.7 Score=25.40 Aligned_cols=18 Identities=39% Similarity=0.676 Sum_probs=11.6
Q ss_pred CCCceeEeccCCccccch
Q 011891 183 SSLEELYLERNNFERIPE 200 (475)
Q Consensus 183 ~~L~~L~L~~n~l~~lp~ 200 (475)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356666777776666664
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=74.81 E-value=2.1 Score=24.81 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=9.6
Q ss_pred CCCcEEeccCCCCccC
Q 011891 17 GKLNQIIMAACNIFTK 32 (475)
Q Consensus 17 ~~L~~L~Ls~~~~l~~ 32 (475)
++|+.|+|++|..+++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 5566666666665543
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=73.07 E-value=0.068 Score=55.61 Aligned_cols=152 Identities=25% Similarity=0.243 Sum_probs=90.5
Q ss_pred CcEEEccccCCc-----ccCcccCCCCCCcEEeeeCCCCCCc----cccccCCC-CCCcEEEeeCcCCc-----cCCccc
Q 011891 68 IEKILLDGTAIE-----ELPSSIGCLSRLLELNLGDCKNLKT----LPSSLCKL-KSLEEICLTGSAIE-----ELPSPI 132 (475)
Q Consensus 68 L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~c~~l~~----lp~~l~~l-~~L~~L~l~~~~i~-----~lp~~i 132 (475)
+..|.|.+|.+. .+-..+.....|..|++++|..... +-..+... ..|++|++..|.++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 566666666554 2334455667777777777654321 11112222 34566666666555 233445
Q ss_pred CCCCCcCEEEcCCCCCCCc----cccCC----CCCCCCCEEEecCCCCCC-----cchhhCCCCC-CceeEeccCCcc--
Q 011891 133 ECLSALCVLDLGDCKSLKS----LKLPF----DGLYSLTYLYLTDCAITE-----LPESLGLLSS-LEELYLERNNFE-- 196 (475)
Q Consensus 133 ~~l~~L~~L~L~~c~~l~~----l~~~~----~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~-L~~L~L~~n~l~-- 196 (475)
.....++.++++.|..... ++..+ ....++++|.+.+|.++. +-..+...++ +..|++..|.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 5566777777777764321 11111 245678889999998875 3344566666 777999998874
Q ss_pred ---ccchHHhhc-CCcccccccccccc
Q 011891 197 ---RIPESIIRL-SKLSSLLVSYCERL 219 (475)
Q Consensus 197 ---~lp~~i~~l-~~L~~L~l~~c~~l 219 (475)
.+...+..+ ..++.+++..|...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~ 275 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSIT 275 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCcc
Confidence 234455555 67789999888643
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=63.06 E-value=5.3 Score=23.35 Aligned_cols=17 Identities=47% Similarity=0.745 Sum_probs=11.1
Q ss_pred CCCCceeEeccCCcccc
Q 011891 182 LSSLEELYLERNNFERI 198 (475)
Q Consensus 182 l~~L~~L~L~~n~l~~l 198 (475)
+++|+.|++++|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35677777777776544
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=59.30 E-value=5.4 Score=22.44 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=8.2
Q ss_pred CCCceeEeccCCcc
Q 011891 183 SSLEELYLERNNFE 196 (475)
Q Consensus 183 ~~L~~L~L~~n~l~ 196 (475)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56777777777764
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=40.76 E-value=20 Score=21.10 Aligned_cols=13 Identities=31% Similarity=0.302 Sum_probs=6.3
Q ss_pred CCCEEEecCCCCC
Q 011891 161 SLTYLYLTDCAIT 173 (475)
Q Consensus 161 ~L~~L~L~~~~l~ 173 (475)
+|+.|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 3455555555443
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.02 E-value=11 Score=39.26 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=32.6
Q ss_pred CCCCCCEEEecCCCCCC---cchhhCCCCCCceeEeccC--CccccchHHh--hcCCcccccccccccc
Q 011891 158 GLYSLTYLYLTDCAITE---LPESLGLLSSLEELYLERN--NFERIPESII--RLSKLSSLLVSYCERL 219 (475)
Q Consensus 158 ~l~~L~~L~L~~~~l~~---lp~~l~~l~~L~~L~L~~n--~l~~lp~~i~--~l~~L~~L~l~~c~~l 219 (475)
+.+.+..+.|++|++.. +.......++|+.|+|++| .+.+.+ ++. +...|++|.+.+|+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccc
Confidence 44556666677766554 2233345567777777777 332222 222 2345666666666543
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=28.49 E-value=24 Score=36.98 Aligned_cols=76 Identities=25% Similarity=0.124 Sum_probs=36.6
Q ss_pred CCcCEEEcCCCCC--CCccccCCCCCCCCCEEEecCC--CCCCcchhhC--CCCCCceeEeccCCccc---cc-----hH
Q 011891 136 SALCVLDLGDCKS--LKSLKLPFDGLYSLTYLYLTDC--AITELPESLG--LLSSLEELYLERNNFER---IP-----ES 201 (475)
Q Consensus 136 ~~L~~L~L~~c~~--l~~l~~~~~~l~~L~~L~L~~~--~l~~lp~~l~--~l~~L~~L~L~~n~l~~---lp-----~~ 201 (475)
+.+..++|++|.. ++.+.......++|+.|+|++| .+...+ ++. ....|++|-+.||.+.+ .+ ..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhhHHHHHHH
Confidence 4445555555542 1111111234566777777777 333211 122 23356777778877631 11 11
Q ss_pred HhhcCCccccc
Q 011891 202 IIRLSKLSSLL 212 (475)
Q Consensus 202 i~~l~~L~~L~ 212 (475)
...+|+|..||
T Consensus 297 ~~~FPKL~~LD 307 (585)
T KOG3763|consen 297 RELFPKLLRLD 307 (585)
T ss_pred HHhcchheeec
Confidence 22467776664
Done!