Query 011891
Match_columns 475
No_of_seqs 436 out of 3756
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 17:25:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 1E-24 3.5E-29 215.3 17.7 207 15-226 79-297 (328)
2 1ogq_A PGIP-2, polygalacturona 99.9 4.2E-25 1.4E-29 216.6 13.6 238 2-242 58-306 (313)
3 4fcg_A Uncharacterized protein 99.9 3.1E-24 1.1E-28 211.8 18.8 211 1-216 88-311 (328)
4 3o6n_A APL1; leucine-rich repe 99.9 6.6E-23 2.2E-27 207.0 20.4 250 2-261 53-350 (390)
5 3rgz_A Protein brassinosteroid 99.9 2E-23 6.8E-28 229.0 17.8 241 2-244 402-721 (768)
6 4fmz_A Internalin; leucine ric 99.9 2.1E-22 7.3E-27 199.8 23.0 246 1-261 51-298 (347)
7 3rgz_A Protein brassinosteroid 99.9 5.7E-23 2E-27 225.3 19.5 238 1-240 425-740 (768)
8 3oja_B Anopheles plasmodium-re 99.9 1.6E-22 5.6E-27 215.5 20.6 250 2-261 59-356 (597)
9 1ogq_A PGIP-2, polygalacturona 99.9 2.7E-23 9.1E-28 203.7 12.5 226 10-238 38-279 (313)
10 4eco_A Uncharacterized protein 99.9 1.4E-22 4.7E-27 217.6 17.8 254 1-261 312-598 (636)
11 2z66_A Variable lymphocyte rec 99.9 1.9E-22 6.5E-27 196.7 16.7 231 2-238 15-259 (306)
12 4ecn_A Leucine-rich repeat pro 99.9 2.2E-22 7.5E-27 221.2 18.8 234 4-245 435-745 (876)
13 3v47_A TOLL-like receptor 5B a 99.9 6.5E-22 2.2E-26 203.5 20.5 259 1-261 37-406 (455)
14 1xku_A Decorin; proteoglycan, 99.9 1.5E-21 5.2E-26 192.4 21.9 233 2-245 39-280 (330)
15 3zyj_A Leucine-rich repeat-con 99.9 7.9E-22 2.7E-26 202.4 20.2 228 2-237 51-289 (440)
16 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-21 5.8E-26 200.8 22.6 227 1-244 49-303 (457)
17 4eco_A Uncharacterized protein 99.9 7.7E-23 2.6E-27 219.6 12.4 246 9-260 239-523 (636)
18 1ozn_A Reticulon 4 receptor; N 99.9 2E-21 6.8E-26 187.5 21.0 207 4-216 21-235 (285)
19 2id5_A Lingo-1, leucine rich r 99.9 3E-21 1E-25 199.9 23.6 241 1-245 39-313 (477)
20 3zyi_A Leucine-rich repeat-con 99.9 1.3E-21 4.5E-26 201.4 20.2 226 3-237 63-300 (452)
21 2ft3_A Biglycan; proteoglycan, 99.9 1.4E-21 4.9E-26 192.8 19.2 224 2-237 41-274 (332)
22 4ecn_A Leucine-rich repeat pro 99.9 3.5E-21 1.2E-25 211.7 23.2 254 1-262 555-839 (876)
23 2id5_A Lingo-1, leucine rich r 99.9 1.1E-20 3.8E-25 195.7 25.1 230 2-237 19-282 (477)
24 1xku_A Decorin; proteoglycan, 99.9 7.8E-21 2.7E-25 187.3 22.8 215 18-245 32-257 (330)
25 2z66_A Variable lymphocyte rec 99.9 4.5E-22 1.5E-26 194.1 13.3 215 1-217 35-259 (306)
26 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-21 4.1E-26 209.0 17.1 249 3-260 294-555 (606)
27 1ozn_A Reticulon 4 receptor; N 99.9 6.4E-21 2.2E-25 183.9 20.5 195 1-197 39-239 (285)
28 4fmz_A Internalin; leucine ric 99.9 6.1E-21 2.1E-25 189.2 20.8 230 1-244 95-327 (347)
29 2z80_A TOLL-like receptor 2, v 99.9 1.6E-21 5.3E-26 194.2 16.0 190 2-197 39-236 (353)
30 2z7x_B TOLL-like receptor 1, v 99.9 6.3E-21 2.1E-25 199.7 20.8 96 1-100 28-126 (520)
31 2z80_A TOLL-like receptor 2, v 99.9 6.3E-22 2.1E-26 197.1 12.4 233 1-238 59-312 (353)
32 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-21 3.7E-26 209.3 14.5 229 2-238 315-556 (606)
33 3t6q_A CD180 antigen; protein- 99.9 5.7E-21 2E-25 203.7 20.0 232 2-237 262-510 (606)
34 3zyi_A Leucine-rich repeat-con 99.9 2.1E-20 7.3E-25 192.4 22.2 219 18-245 55-283 (452)
35 2ft3_A Biglycan; proteoglycan, 99.9 1.9E-20 6.5E-25 184.8 19.5 229 18-260 34-274 (332)
36 3zyj_A Leucine-rich repeat-con 99.9 2.5E-20 8.6E-25 191.2 21.2 218 18-245 44-272 (440)
37 3t6q_A CD180 antigen; protein- 99.9 4.3E-20 1.5E-24 196.9 23.4 215 2-218 286-512 (606)
38 2z7x_B TOLL-like receptor 1, v 99.9 1.6E-20 5.5E-25 196.6 19.7 119 1-126 7-128 (520)
39 3v47_A TOLL-like receptor 5B a 99.8 9.5E-21 3.2E-25 194.8 17.4 125 113-238 275-406 (455)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 4.1E-20 1.4E-24 195.5 22.3 94 2-99 60-156 (562)
41 1o6v_A Internalin A; bacterial 99.8 7.1E-20 2.4E-24 189.2 23.2 203 1-216 75-297 (466)
42 1wwl_A Monocyte differentiatio 99.8 2.3E-21 8E-26 189.7 11.4 173 42-216 94-284 (312)
43 1o6v_A Internalin A; bacterial 99.8 5.6E-20 1.9E-24 190.0 22.0 223 1-237 53-297 (466)
44 3g06_A SSPH2 (leucine-rich rep 99.8 1.8E-19 6.1E-24 191.7 26.3 231 1-261 47-295 (622)
45 3bz5_A Internalin-J, INLJ; leu 99.8 1.8E-19 6.1E-24 185.7 25.4 187 11-216 36-222 (457)
46 2z81_A CD282 antigen, TOLL-lik 99.8 1.3E-20 4.4E-25 198.5 16.6 108 1-110 57-169 (549)
47 3o6n_A APL1; leucine-rich repe 99.8 5E-20 1.7E-24 185.8 19.9 231 1-237 76-349 (390)
48 2z81_A CD282 antigen, TOLL-lik 99.8 3.9E-20 1.3E-24 194.8 19.6 131 1-134 33-170 (549)
49 1h6u_A Internalin H; cell adhe 99.8 4E-20 1.4E-24 180.7 18.2 192 13-217 37-228 (308)
50 2z62_A TOLL-like receptor 4, v 99.8 2.6E-20 9E-25 178.8 16.6 209 4-217 17-235 (276)
51 1p9a_G Platelet glycoprotein I 99.8 9.2E-20 3.2E-24 176.5 19.4 197 13-217 6-206 (290)
52 1jl5_A Outer protein YOPM; leu 99.8 2.3E-20 8E-25 192.1 15.5 224 2-244 19-273 (454)
53 1wwl_A Monocyte differentiatio 99.8 1.2E-21 3.9E-26 191.9 5.2 177 64-243 93-289 (312)
54 2xwt_C Thyrotropin receptor; s 99.8 6.5E-20 2.2E-24 172.3 15.9 205 27-239 20-238 (239)
55 3oja_B Anopheles plasmodium-re 99.8 1.1E-19 3.8E-24 193.6 19.7 230 1-238 82-356 (597)
56 3o53_A Protein LRIM1, AGAP0063 99.8 1.3E-20 4.3E-25 184.9 11.4 224 2-237 18-247 (317)
57 3rfs_A Internalin B, repeat mo 99.8 2.6E-19 8.9E-24 171.6 19.9 206 12-228 36-244 (272)
58 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.3E-19 1.1E-23 188.5 22.3 133 110-246 350-491 (562)
59 3o53_A Protein LRIM1, AGAP0063 99.8 3.7E-21 1.3E-25 188.7 6.2 231 1-243 41-278 (317)
60 2xwt_C Thyrotropin receptor; s 99.8 9.2E-20 3.1E-24 171.2 14.5 204 5-218 22-238 (239)
61 2o6q_A Variable lymphocyte rec 99.8 1E-18 3.5E-23 167.3 21.9 193 17-217 16-216 (270)
62 2z63_A TOLL-like receptor 4, v 99.8 6.7E-20 2.3E-24 193.7 14.8 201 10-216 275-504 (570)
63 2o6q_A Variable lymphocyte rec 99.8 1E-18 3.5E-23 167.3 21.7 168 45-216 18-191 (270)
64 3j0a_A TOLL-like receptor 5; m 99.8 3.4E-19 1.1E-23 197.4 20.0 124 2-126 32-161 (844)
65 3oja_A Leucine-rich immune mol 99.8 5.7E-20 2E-24 190.9 12.6 218 8-237 21-247 (487)
66 1ziw_A TOLL-like receptor 3; i 99.8 4.5E-19 1.5E-23 191.7 20.1 145 1-148 32-183 (680)
67 1jl5_A Outer protein YOPM; leu 99.8 1E-18 3.4E-23 179.9 21.6 209 2-237 79-287 (454)
68 1h6u_A Internalin H; cell adhe 99.8 5.1E-19 1.8E-23 172.8 18.2 187 1-200 48-234 (308)
69 1p9a_G Platelet glycoprotein I 99.8 9E-19 3.1E-23 169.5 19.0 190 1-196 17-208 (290)
70 2z63_A TOLL-like receptor 4, v 99.8 2.6E-19 9E-24 189.2 16.4 124 2-128 36-164 (570)
71 1ziw_A TOLL-like receptor 3; i 99.8 1.1E-18 3.9E-23 188.5 21.6 245 12-260 324-594 (680)
72 3oja_A Leucine-rich immune mol 99.8 7E-20 2.4E-24 190.3 11.5 207 1-219 41-250 (487)
73 3j0a_A TOLL-like receptor 5; m 99.8 6.1E-19 2.1E-23 195.3 19.6 96 6-103 61-162 (844)
74 3g06_A SSPH2 (leucine-rich rep 99.8 2E-18 6.9E-23 183.6 21.9 208 1-238 68-295 (622)
75 3rfs_A Internalin B, repeat mo 99.8 8.9E-19 3E-23 167.9 17.3 211 16-236 18-231 (272)
76 4g8a_A TOLL-like receptor 4; l 99.8 3.4E-18 1.2E-22 182.5 21.5 123 1-126 59-186 (635)
77 4glp_A Monocyte differentiatio 99.8 2E-19 6.9E-24 175.7 9.8 216 18-237 65-304 (310)
78 2z62_A TOLL-like receptor 4, v 99.8 2.2E-18 7.4E-23 165.4 15.8 192 1-196 35-237 (276)
79 4ay9_X Follicle-stimulating ho 99.8 2.6E-18 9E-23 170.8 13.9 226 3-236 18-255 (350)
80 4ay9_X Follicle-stimulating ho 99.8 1E-17 3.5E-22 166.5 17.3 219 20-245 12-241 (350)
81 1h6t_A Internalin B; cell adhe 99.8 7.3E-18 2.5E-22 163.2 14.6 170 39-217 42-211 (291)
82 3m19_A Variable lymphocyte rec 99.7 2.5E-17 8.7E-22 155.7 17.6 173 17-196 14-192 (251)
83 2ast_B S-phase kinase-associat 99.7 1E-19 3.6E-24 179.4 0.8 215 18-237 48-282 (336)
84 1h6t_A Internalin B; cell adhe 99.7 2.5E-17 8.4E-22 159.5 16.6 175 13-199 42-216 (291)
85 2ca6_A RAN GTPase-activating p 99.7 1.2E-19 4.2E-24 182.7 -0.3 233 5-237 20-313 (386)
86 3cvr_A Invasion plasmid antige 99.7 5.5E-17 1.9E-21 170.7 18.8 181 18-223 60-247 (571)
87 2ast_B S-phase kinase-associat 99.7 8.4E-19 2.9E-23 172.9 4.2 231 11-245 62-310 (336)
88 4ezg_A Putative uncharacterize 99.7 2.2E-17 7.5E-22 150.3 13.1 149 64-217 42-192 (197)
89 3m19_A Variable lymphocyte rec 99.7 1.5E-16 5.1E-21 150.5 19.2 171 43-217 14-190 (251)
90 4glp_A Monocyte differentiatio 99.7 7.9E-18 2.7E-22 164.4 10.5 200 43-244 64-288 (310)
91 2ca6_A RAN GTPase-activating p 99.7 6.8E-19 2.3E-23 177.3 2.9 210 9-218 52-315 (386)
92 3cvr_A Invasion plasmid antige 99.7 1.7E-16 5.7E-21 167.0 18.8 182 1-207 66-255 (571)
93 1m9s_A Internalin B; cell inva 99.7 6.8E-17 2.3E-21 171.6 15.0 174 14-199 40-213 (605)
94 4ezg_A Putative uncharacterize 99.7 5.7E-17 2E-21 147.5 12.3 153 40-196 41-194 (197)
95 1m9s_A Internalin B; cell inva 99.7 8.9E-17 3.1E-21 170.7 15.7 189 17-218 21-209 (605)
96 1xeu_A Internalin C; cellular 99.7 4.3E-17 1.5E-21 155.4 7.1 146 40-217 38-183 (263)
97 2o6s_A Variable lymphocyte rec 99.7 3E-15 1E-19 137.2 17.8 151 67-224 29-183 (208)
98 3goz_A Leucine-rich repeat-con 99.7 1.3E-17 4.3E-22 166.6 1.7 215 1-217 5-264 (362)
99 1xeu_A Internalin C; cellular 99.7 1.9E-16 6.3E-21 151.0 9.1 162 2-199 27-188 (263)
100 2xot_A Amphoterin-induced prot 99.6 2.1E-15 7E-20 150.5 16.8 169 46-217 21-200 (361)
101 2o6s_A Variable lymphocyte rec 99.6 4.4E-15 1.5E-19 136.0 17.2 174 20-207 10-190 (208)
102 3e6j_A Variable lymphocyte rec 99.6 2.8E-15 9.4E-20 139.8 15.3 146 46-196 22-172 (229)
103 1z7x_W Ribonuclease inhibitor; 99.6 2.5E-17 8.5E-22 169.4 0.2 103 136-238 199-324 (461)
104 2v9t_B SLIT homolog 2 protein 99.6 6.5E-15 2.2E-19 136.4 16.4 148 46-196 14-165 (220)
105 1dce_A Protein (RAB geranylger 99.6 1.2E-18 4.1E-23 183.9 -11.3 193 13-212 345-566 (567)
106 2v70_A SLIT-2, SLIT homolog 2 99.6 1.3E-14 4.5E-19 134.3 16.3 148 46-196 14-166 (220)
107 4g8a_A TOLL-like receptor 4; l 99.6 4.4E-15 1.5E-19 158.3 14.7 221 14-238 346-578 (635)
108 2v9t_B SLIT homolog 2 protein 99.6 9.2E-15 3.1E-19 135.4 14.8 145 69-217 14-163 (220)
109 1z7x_W Ribonuclease inhibitor; 99.6 2.3E-17 7.8E-22 169.7 -3.3 222 15-238 140-409 (461)
110 2v70_A SLIT-2, SLIT homolog 2 99.6 7.6E-15 2.6E-19 135.9 13.8 147 68-217 13-164 (220)
111 3e6j_A Variable lymphocyte rec 99.6 2.4E-14 8.1E-19 133.4 17.1 148 68-217 21-170 (229)
112 3goz_A Leucine-rich repeat-con 99.6 4.1E-16 1.4E-20 155.6 3.4 215 1-217 29-295 (362)
113 2ell_A Acidic leucine-rich nuc 99.6 1.2E-14 4.2E-19 128.3 11.1 128 65-217 23-158 (168)
114 2xot_A Amphoterin-induced prot 99.6 2.4E-14 8.3E-19 142.7 14.6 169 20-196 21-202 (361)
115 2ell_A Acidic leucine-rich nuc 99.6 9.9E-15 3.4E-19 128.9 10.3 134 41-199 22-163 (168)
116 2je0_A Acidic leucine-rich nuc 99.5 2.1E-14 7.2E-19 124.2 9.5 126 89-215 17-149 (149)
117 1dce_A Protein (RAB geranylger 99.5 5.7E-16 2E-20 163.4 -1.6 106 114-223 442-549 (567)
118 4b8c_D Glucose-repressible alc 99.5 1.2E-14 4E-19 158.0 6.9 156 76-236 211-368 (727)
119 3ogk_B Coronatine-insensitive 99.5 1.9E-15 6.6E-20 160.3 -0.7 227 9-242 262-527 (592)
120 3ogk_B Coronatine-insensitive 99.5 2.3E-15 8E-20 159.7 -2.0 192 45-236 140-351 (592)
121 1a9n_A U2A', U2A'; complex (nu 99.4 2.6E-13 9E-18 120.8 9.7 102 114-217 43-151 (176)
122 1w8a_A SLIT protein; signaling 99.4 1.5E-12 5.2E-17 117.7 14.2 125 69-196 11-139 (192)
123 2je0_A Acidic leucine-rich nuc 99.4 1.5E-13 5.3E-18 118.7 6.6 123 66-191 17-148 (149)
124 4b8c_D Glucose-repressible alc 99.4 9E-14 3.1E-18 151.0 6.3 158 66-224 173-334 (727)
125 1a9n_A U2A', U2A'; complex (nu 99.4 1.9E-13 6.3E-18 121.8 7.3 130 65-197 18-154 (176)
126 1w8a_A SLIT protein; signaling 99.4 2.4E-12 8.1E-17 116.4 13.3 126 46-174 11-140 (192)
127 2wfh_A SLIT homolog 2 protein 99.4 3E-12 1E-16 115.8 13.9 124 70-196 14-139 (193)
128 2p1m_B Transport inhibitor res 99.4 1.7E-14 5.8E-19 153.0 -1.3 199 14-215 102-347 (594)
129 2o6r_A Variable lymphocyte rec 99.4 7.3E-12 2.5E-16 111.4 15.2 128 69-199 10-140 (177)
130 2wfh_A SLIT homolog 2 protein 99.4 2.9E-12 1E-16 115.9 12.3 123 92-217 13-137 (193)
131 2p1m_B Transport inhibitor res 99.4 2E-14 6.7E-19 152.5 -3.7 223 13-235 62-346 (594)
132 1ds9_A Outer arm dynein; leuci 99.3 4E-14 1.4E-18 128.7 -5.1 129 80-212 39-180 (198)
133 3sb4_A Hypothetical leucine ri 99.3 1.1E-11 3.7E-16 121.8 10.5 190 16-211 48-326 (329)
134 2o6r_A Variable lymphocyte rec 99.2 1.3E-10 4.5E-15 103.2 15.0 125 46-174 10-138 (177)
135 1ds9_A Outer arm dynein; leuci 99.2 3.7E-14 1.3E-18 128.9 -10.2 126 64-195 46-184 (198)
136 2r9u_A Variable lymphocyte rec 99.1 4.1E-10 1.4E-14 99.9 12.5 89 113-202 33-124 (174)
137 3g39_A Variable lymphocyte rec 99.1 5.5E-10 1.9E-14 98.6 12.2 86 113-199 30-118 (170)
138 2r9u_A Variable lymphocyte rec 99.1 9.3E-10 3.2E-14 97.6 12.8 106 69-177 15-122 (174)
139 3g39_A Variable lymphocyte rec 99.1 1.3E-09 4.4E-14 96.3 12.7 103 69-174 12-116 (170)
140 3sb4_A Hypothetical leucine ri 99.1 8.8E-11 3E-15 115.2 5.3 62 159-223 225-289 (329)
141 4fdw_A Leucine rich hypothetic 98.9 2.1E-08 7.1E-13 101.0 17.8 217 5-236 123-354 (401)
142 4fdw_A Leucine rich hypothetic 98.9 4.2E-08 1.4E-12 98.8 18.0 200 5-216 145-355 (401)
143 2ifg_A High affinity nerve gro 98.9 8.3E-09 2.8E-13 101.7 11.9 96 101-197 20-117 (347)
144 3un9_A NLR family member X1; l 98.8 1.3E-10 4.3E-15 116.1 -3.1 153 43-196 72-252 (372)
145 2ifg_A High affinity nerve gro 98.8 1.2E-08 4.1E-13 100.5 10.8 99 48-146 13-113 (347)
146 3un9_A NLR family member X1; l 98.8 4.8E-10 1.7E-14 111.9 -0.2 153 65-217 71-250 (372)
147 2ra8_A Uncharacterized protein 98.6 1.4E-08 4.8E-13 100.7 4.6 60 158-217 250-318 (362)
148 2ra8_A Uncharacterized protein 98.6 2.7E-08 9.1E-13 98.7 6.1 156 39-196 135-320 (362)
149 4fs7_A Uncharacterized protein 98.4 6E-06 2E-10 82.7 15.2 56 62-120 158-215 (394)
150 4gt6_A Cell surface protein; l 98.1 3.2E-05 1.1E-09 77.3 15.3 82 12-97 58-145 (394)
151 1io0_A Tropomodulin; LRR prote 98.1 6.9E-07 2.4E-11 79.7 2.3 58 159-216 92-161 (185)
152 3e4g_A ATP synthase subunit S, 98.0 1.9E-06 6.7E-11 75.6 3.4 84 18-103 62-153 (176)
153 1io0_A Tropomodulin; LRR prote 98.0 1.3E-06 4.3E-11 78.0 2.2 111 86-196 33-164 (185)
154 4fs7_A Uncharacterized protein 98.0 7E-05 2.4E-09 74.8 13.8 58 12-74 66-125 (394)
155 3e4g_A ATP synthase subunit S, 98.0 5.8E-06 2E-10 72.6 4.9 17 203-219 136-152 (176)
156 4gt6_A Cell surface protein; l 97.8 0.00073 2.5E-08 67.3 17.5 79 132-214 261-342 (394)
157 4h09_A Hypothetical leucine ri 97.6 0.002 6.8E-08 63.6 17.9 57 157-214 260-318 (379)
158 4h09_A Hypothetical leucine ri 97.6 0.0025 8.5E-08 62.9 17.5 57 157-215 237-295 (379)
159 3rw6_A Nuclear RNA export fact 97.5 8.5E-05 2.9E-09 69.9 5.9 37 158-195 194-232 (267)
160 3rw6_A Nuclear RNA export fact 97.4 9.7E-05 3.3E-09 69.5 4.0 77 64-142 168-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 96.0 0.004 1.4E-07 55.5 3.6 33 160-192 98-135 (197)
162 3rfe_A Platelet glycoprotein I 95.6 0.015 5E-07 48.1 5.1 35 161-195 32-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 95.4 0.0072 2.4E-07 53.8 2.8 82 135-216 40-136 (197)
164 3rfe_A Platelet glycoprotein I 94.1 0.075 2.6E-06 43.8 5.7 50 47-99 12-65 (130)
165 3ukw_C Bimax1 peptide; arm rep 43.0 12 0.00042 20.4 1.5 15 460-474 13-27 (28)
166 2lz0_A Uncharacterized protein 21.4 1.2E+02 0.004 23.0 4.5 13 39-51 16-28 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1e-24 Score=215.26 Aligned_cols=207 Identities=26% Similarity=0.402 Sum_probs=184.2
Q ss_pred CCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCcccCCCCCCcE
Q 011891 15 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLE 93 (475)
Q Consensus 15 ~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 93 (475)
..++++.|+|+++ .++.+|. .+.++++|++|+|++|. +..+|. ++.+++|++|+|++|.++.+|..++++++|++
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~--~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPD--QAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCS--CGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred cccceeEEEccCC-CchhcCh--hhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence 3588999999996 4667775 47779999999999964 558887 88999999999999999999999999999999
Q ss_pred EeeeCCCCCCccccccCC---------CCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCE
Q 011891 94 LNLGDCKNLKTLPSSLCK---------LKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTY 164 (475)
Q Consensus 94 L~L~~c~~l~~lp~~l~~---------l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~ 164 (475)
|++++|..++.+|..+.. +++|++|++++|.++.+|..+..+++|++|++++|.. ..+|..+..+++|+.
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l-~~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCC-CCCCGGGGGCTTCCE
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCC-CcCchhhccCCCCCE
Confidence 999999999999987764 9999999999999999999999999999999999874 457777889999999
Q ss_pred EEecCCCCCC-cchhhCCCCCCceeEeccCCc-cccchHHhhcCCcccccccccccccccCCCc
Q 011891 165 LYLTDCAITE-LPESLGLLSSLEELYLERNNF-ERIPESIIRLSKLSSLLVSYCERLQSLPKLP 226 (475)
Q Consensus 165 L~L~~~~l~~-lp~~l~~l~~L~~L~L~~n~l-~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l~ 226 (475)
|++++|++.+ +|..++.+++|+.|+|++|++ ..+|..+..+++|+.|+|++|+.++.+|...
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 9999998776 888899999999999999876 5888889999999999999999999888643
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=4.2e-25 Score=216.57 Aligned_cols=238 Identities=18% Similarity=0.247 Sum_probs=184.1
Q ss_pred CCCCcc---cccccccCCCCCcEEeccCCCCcc-CCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEcccc
Q 011891 2 PHSNIE---QLSESVQHHGKLNQIIMAACNIFT-KTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGT 76 (475)
Q Consensus 2 ~~s~l~---~L~~~~~~l~~L~~L~Ls~~~~l~-~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~ 76 (475)
+++++. .++..+..+++|++|+|+++..+. .+| ..+.++++|++|+|++|...+.+|. +..+++|++|++++|
T Consensus 58 ~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 135 (313)
T 1ogq_A 58 SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP--PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135 (313)
T ss_dssp ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC--GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS
T ss_pred CCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCC--hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC
Confidence 345565 477788888888888888533343 455 3577888888888888655446776 778888888888888
Q ss_pred CCc-ccCcccCCCCCCcEEeeeCCCCCCccccccCCCC-CCcEEEeeCcCCc-cCCcccCCCCCcCEEEcCCCCCCCccc
Q 011891 77 AIE-ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLK-SLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLK 153 (475)
Q Consensus 77 ~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~-~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~l~ 153 (475)
.+. .+|..+..+++|++|++++|.....+|..++.++ +|++|++++|.++ .+|..+..++ |+.|++++|......|
T Consensus 136 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~ 214 (313)
T 1ogq_A 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214 (313)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG
T ss_pred ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC
Confidence 887 6777888888888888888766557888888887 8888888888887 6777777776 8888888887665667
Q ss_pred cCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcc-ccchHHhhcCCcccccccccccccccCCC--ccCcc
Q 011891 154 LPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLY 230 (475)
Q Consensus 154 ~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~l--~~~L~ 230 (475)
..+..+++|+.|++++|.++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+....+|.. .++|+
T Consensus 215 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~ 294 (313)
T 1ogq_A 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294 (313)
T ss_dssp GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSC
T ss_pred HHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccC
Confidence 7778888899999999988875556788889999999999987 78888888999999999988766677764 35677
Q ss_pred eecccccccCcc
Q 011891 231 WLDAQHCTTLES 242 (475)
Q Consensus 231 ~L~i~~c~~L~~ 242 (475)
.+++.+++.+..
T Consensus 295 ~l~l~~N~~lc~ 306 (313)
T 1ogq_A 295 VSAYANNKCLCG 306 (313)
T ss_dssp GGGTCSSSEEES
T ss_pred hHHhcCCCCccC
Confidence 777777665543
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=3.1e-24 Score=211.78 Aligned_cols=211 Identities=26% Similarity=0.418 Sum_probs=189.3
Q ss_pred CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccC-C
Q 011891 1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTA-I 78 (475)
Q Consensus 1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~-i 78 (475)
|++++++.+|..+..+++|++|+|++|. ++.+|. .++++++|++|+|++| .+..+|. ++.+++|++|++++|. +
T Consensus 88 L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~--~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 88 LRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPD--TMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPEL 163 (328)
T ss_dssp EESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCS--CGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTC
T ss_pred ccCCCchhcChhhhhCCCCCEEECCCCC-ccchhH--HHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCc
Confidence 3578899999999999999999999975 557774 5788999999999996 5668887 8899999999999975 4
Q ss_pred cccCcccCC---------CCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCC
Q 011891 79 EELPSSIGC---------LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSL 149 (475)
Q Consensus 79 ~~lp~~i~~---------l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l 149 (475)
..+|..+.. +++|++|++++|. ++.+|..++.+++|++|++++|.++.+|..+..+++|++|++++|...
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTC
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcch
Confidence 578877654 9999999999974 559999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCEEEecCCCCCC-cchhhCCCCCCceeEeccCCc-cccchHHhhcCCccccccccc
Q 011891 150 KSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNF-ERIPESIIRLSKLSSLLVSYC 216 (475)
Q Consensus 150 ~~l~~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~L~~n~l-~~lp~~i~~l~~L~~L~l~~c 216 (475)
..+|..+.++++|+.|++++|++.+ +|..++.+++|+.|+|++|++ ..+|..+.++++|+.+++..+
T Consensus 243 ~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 9999999999999999999998776 898999999999999999886 589999999999999988864
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=6.6e-23 Score=206.98 Aligned_cols=250 Identities=13% Similarity=0.140 Sum_probs=179.3
Q ss_pred CCCCccccccc-ccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCc-C-cCCCCCCcEEEccccCC
Q 011891 2 PHSNIEQLSES-VQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTAI 78 (475)
Q Consensus 2 ~~s~l~~L~~~-~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p-~-i~~l~~L~~L~L~~~~i 78 (475)
.++.++.+|.. +..+++|++|+|++|. ++.++. ..+.++++|++|+|++|. +..++ . ++.+++|++|++++|.+
T Consensus 53 ~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 129 (390)
T 3o6n_A 53 KNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDT-YAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDL 129 (390)
T ss_dssp ESCEESEECTHHHHHCCCCSEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCchhhCChhHhcccccCcEEECCCCc-ccccCh-hhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCcc
Confidence 35667777765 5778889999998864 455443 356788888888888864 55554 3 67888888899888888
Q ss_pred cccCcc-cCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCC---------------------
Q 011891 79 EELPSS-IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLS--------------------- 136 (475)
Q Consensus 79 ~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~--------------------- 136 (475)
+.+|.. +.++++|++|++++|......|..+..+++|++|++++|.++.++. ..++
T Consensus 130 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~L 207 (390)
T 3o6n_A 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTLAIPIAV 207 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG--GGCTTCSEEECCSSCCSEEECCSSC
T ss_pred CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc--ccccccceeecccccccccCCCCcc
Confidence 888876 4788888888888876554455667888888888888888775532 2222
Q ss_pred -------------------CcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCcc
Q 011891 137 -------------------ALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFE 196 (475)
Q Consensus 137 -------------------~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~ 196 (475)
+|+.|++++|... .. ..+..+++|+.|++++|.++++ |..+..+++|+.|++++|+++
T Consensus 208 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 208 EELDASHNSINVVRGPVNVELTILKLQHNNLT-DT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285 (390)
T ss_dssp SEEECCSSCCCEEECCCCSSCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC
T ss_pred eEEECCCCeeeeccccccccccEEECCCCCCc-cc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc
Confidence 3444444444322 12 2346788999999999999984 778899999999999999999
Q ss_pred ccchHHhhcCCcccccccccccccccCCC---ccCcceecccccccCccccCCCCCcceeEEEecCCc
Q 011891 197 RIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENF 261 (475)
Q Consensus 197 ~lp~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~L~i~~c~~L~~l~~~~~~~~~~~l~~~~c~ 261 (475)
.+|..+..+++|+.|++++| .++.+|.. .++|+.|+++++. ++.++.. .......+.+.++.
T Consensus 286 ~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~-~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 286 ALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLS-THHTLKNLTLSHND 350 (390)
T ss_dssp EEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCC-TTCCCSEEECCSSC
T ss_pred ccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeCch-hhccCCEEEcCCCC
Confidence 88877788999999999998 45566542 3688999998875 5555432 12234556665553
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=2e-23 Score=228.97 Aligned_cols=241 Identities=19% Similarity=0.256 Sum_probs=197.5
Q ss_pred CCCCcc-cccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCc
Q 011891 2 PHSNIE-QLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE 79 (475)
Q Consensus 2 ~~s~l~-~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~ 79 (475)
.+|++. .++..+..+++|++|+|++|.....+| ..+.++++|++|++++|...+.+|. +..+++|++|++++|.+.
T Consensus 402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP--SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCccccccCHHHhcCCCCCEEECcCCcccCccc--HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence 345555 567788889999999999876544555 3678889999999999876667777 788999999999999988
Q ss_pred -ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc-cCCcccCCCCCcCEEEcCCCCCCCcccc---
Q 011891 80 -ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKL--- 154 (475)
Q Consensus 80 -~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~l~~--- 154 (475)
.+|..++++++|++|++++|.....+|..++.+++|++|++++|.++ .+|..+..+++|+.|++++|.....+|.
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 67888999999999999998877789999999999999999999998 7888899999999999998865433332
Q ss_pred -------------------------------------------------------------------CCCCCCCCCEEEe
Q 011891 155 -------------------------------------------------------------------PFDGLYSLTYLYL 167 (475)
Q Consensus 155 -------------------------------------------------------------------~~~~l~~L~~L~L 167 (475)
.+..+++|+.|+|
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 2334677899999
Q ss_pred cCCCCCC-cchhhCCCCCCceeEeccCCcc-ccchHHhhcCCcccccccccccccccCCC---ccCcceecccccccCcc
Q 011891 168 TDCAITE-LPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCTTLES 242 (475)
Q Consensus 168 ~~~~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~L~i~~c~~L~~ 242 (475)
++|++++ +|..++.+++|+.|+|++|+++ .+|..++.+++|+.|++++|+....+|.. ..+|+.|+++++.--..
T Consensus 640 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp CSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred cCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 9999986 8999999999999999999997 88999999999999999999877788864 35688888888754334
Q ss_pred cc
Q 011891 243 LS 244 (475)
Q Consensus 243 l~ 244 (475)
+|
T Consensus 720 iP 721 (768)
T 3rgz_A 720 IP 721 (768)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2.1e-22 Score=199.75 Aligned_cols=246 Identities=19% Similarity=0.316 Sum_probs=199.3
Q ss_pred CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891 1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE 80 (475)
Q Consensus 1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~ 80 (475)
+.+++++.++ ++..+++|++|++++| .++.++. +.++++|++|++++| .+..+|.+..+++|++|++++|.+..
T Consensus 51 l~~~~i~~~~-~~~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~l~~n~i~~ 124 (347)
T 4fmz_A 51 VAGEKVASIQ-GIEYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNEDNISD 124 (347)
T ss_dssp CCSSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECTTSCCCC
T ss_pred EeCCccccch-hhhhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEECcCCcccC
Confidence 3567777775 5888999999999997 5566653 778899999999996 67778889999999999999999998
Q ss_pred cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCC
Q 011891 81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLY 160 (475)
Q Consensus 81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~ 160 (475)
++. +..+++|++|++++|.....++. +..+++|++|++++|.+..++. +..+++|+.|++++|.. ..++. +..++
T Consensus 125 ~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~ 199 (347)
T 4fmz_A 125 ISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI-EDISP-LASLT 199 (347)
T ss_dssp CGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC-CCCGG-GGGCT
T ss_pred chh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc-ccccc-ccCCC
Confidence 877 88999999999999987777765 8899999999999999988776 78899999999999874 44443 67888
Q ss_pred CCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCC--ccCcceecccccc
Q 011891 161 SLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLDAQHCT 238 (475)
Q Consensus 161 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l--~~~L~~L~i~~c~ 238 (475)
+|+.|++++|.+++++. +..+++|+.|++++|.++.++. +..+++|+.|++++| .++.++.+ +++|+.|++++|
T Consensus 200 ~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n- 275 (347)
T 4fmz_A 200 SLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN- 275 (347)
T ss_dssp TCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-
T ss_pred ccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-
Confidence 99999999999998765 7888999999999999988886 888999999999988 45555533 478999999887
Q ss_pred cCccccCCCCCcceeEEEecCCc
Q 011891 239 TLESLSGLFSSYKCVFFYLNENF 261 (475)
Q Consensus 239 ~L~~l~~~~~~~~~~~l~~~~c~ 261 (475)
.++.++..........+.+.+|.
T Consensus 276 ~l~~~~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 276 QISDISVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSC
T ss_pred ccCCChhhcCCCCCCEEECcCCc
Confidence 45555432222345667777774
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=5.7e-23 Score=225.33 Aligned_cols=238 Identities=20% Similarity=0.249 Sum_probs=206.3
Q ss_pred CCCCCcc-cccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCC
Q 011891 1 MPHSNIE-QLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAI 78 (475)
Q Consensus 1 l~~s~l~-~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i 78 (475)
|++|++. .+|..+..+++|+.|++++|.....+|. .+..+++|++|++++|...+.+|. +..+++|++|++++|.+
T Consensus 425 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502 (768)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred CcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCcc
Confidence 4567776 5678899999999999999876656664 678899999999999877777887 88999999999999999
Q ss_pred c-ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc-cCCcc-------------------------
Q 011891 79 E-ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSP------------------------- 131 (475)
Q Consensus 79 ~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~------------------------- 131 (475)
. .+|..++.+++|++|++++|.....+|..++.+++|+.|++++|.+. .+|..
T Consensus 503 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (768)
T 3rgz_A 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence 8 78999999999999999999888899999999999999999998776 44432
Q ss_pred ---------------------------------------------cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEE
Q 011891 132 ---------------------------------------------IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLY 166 (475)
Q Consensus 132 ---------------------------------------------i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~ 166 (475)
+..+++|+.|++++|...+.+|..++++++|+.|+
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 662 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEE
T ss_pred ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEe
Confidence 34467899999999998889999999999999999
Q ss_pred ecCCCCCC-cchhhCCCCCCceeEeccCCcc-ccchHHhhcCCcccccccccccccccCCC--ccCcceecccccccC
Q 011891 167 LTDCAITE-LPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLDAQHCTTL 240 (475)
Q Consensus 167 L~~~~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~l--~~~L~~L~i~~c~~L 240 (475)
|++|++++ +|..++.+++|+.|+|++|+++ .+|..+..+++|+.|++++|+....+|.. +.++....+.+++.|
T Consensus 663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchh
Confidence 99999996 9999999999999999999997 89999999999999999999888888864 345555556666554
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.6e-22 Score=215.53 Aligned_cols=250 Identities=13% Similarity=0.142 Sum_probs=174.9
Q ss_pred CCCCccccccc-ccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCC
Q 011891 2 PHSNIEQLSES-VQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAI 78 (475)
Q Consensus 2 ~~s~l~~L~~~-~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i 78 (475)
.++.+..+|.. +..+++|++|+|++|. ++.++. ..+.++++|++|+|++|. +..+|. ++.+++|++|+|++|.+
T Consensus 59 ~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 135 (597)
T 3oja_B 59 KNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDT-YAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDL 135 (597)
T ss_dssp SSCEESEECTHHHHHCCCCSEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred eCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCCh-HHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCC
Confidence 45566677754 5678888999988864 455443 356788888888888864 555554 67888888899888888
Q ss_pred cccCcc-cCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCC--------------------
Q 011891 79 EELPSS-IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSA-------------------- 137 (475)
Q Consensus 79 ~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~-------------------- 137 (475)
+.+|.. ++++++|++|++++|......|..++.+++|++|++++|.++.++. ..+++
T Consensus 136 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~L~l~~n~l~~l~~~~~L 213 (597)
T 3oja_B 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTLAIPIAV 213 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG--GGCTTCSEEECCSSCCSEEECCTTC
T ss_pred CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh--hhhhhhhhhhcccCccccccCCchh
Confidence 888776 4788888888888876655556678888888888888888776542 22222
Q ss_pred --------------------cCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCC-cchhhCCCCCCceeEeccCCcc
Q 011891 138 --------------------LCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFE 196 (475)
Q Consensus 138 --------------------L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~L~~n~l~ 196 (475)
|+.|++++|.... +..+..+++|+.|+|++|.+++ .|..++.+++|+.|+|++|.++
T Consensus 214 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 214 EELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291 (597)
T ss_dssp SEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred heeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence 3333333333211 1234677889999999998888 4778888899999999999988
Q ss_pred ccchHHhhcCCcccccccccccccccCCC---ccCcceecccccccCccccCCCCCcceeEEEecCCc
Q 011891 197 RIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENF 261 (475)
Q Consensus 197 ~lp~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~L~i~~c~~L~~l~~~~~~~~~~~l~~~~c~ 261 (475)
.+|..+..+++|+.|++++|. +..+|.. .++|+.|++++|. +..++.. .......+.+.++.
T Consensus 292 ~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 292 ALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLKLS-THHTLKNLTLSHND 356 (597)
T ss_dssp EEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCCCC-TTCCCSEEECCSSC
T ss_pred CCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC-CCCcChh-hcCCCCEEEeeCCC
Confidence 888777778899999998884 4456542 3678888888864 4444421 11233456665553
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2.7e-23 Score=203.72 Aligned_cols=226 Identities=17% Similarity=0.230 Sum_probs=194.3
Q ss_pred cccccCC-----CCCcEEeccCCCCcc--CCCChhhccCCCCCcEEEEeC-CCCCCCCcC-cCCCCCCcEEEccccCCc-
Q 011891 10 SESVQHH-----GKLNQIIMAACNIFT--KTPNPSLIQHLNKLVILNLSG-CSKLKSLPE-ISSAGNIEKILLDGTAIE- 79 (475)
Q Consensus 10 ~~~~~~l-----~~L~~L~Ls~~~~l~--~~p~~~~~~~l~~L~~L~L~~-c~~l~~~p~-i~~l~~L~~L~L~~~~i~- 79 (475)
|.|+..- .+++.|+|+++..-. .+| ..+.++++|++|++++ +...+.+|. ++.+++|++|++++|.+.
T Consensus 38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~--~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 115 (313)
T 1ogq_A 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP--SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115 (313)
T ss_dssp STTEEECCSSSCCCEEEEEEECCCCSSCEECC--GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE
T ss_pred CcceEeCCCCCCceEEEEECCCCCccCCcccC--hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC
Confidence 6666432 689999999976544 466 4688999999999996 555557786 889999999999999998
Q ss_pred ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc-cCCcccCCCC-CcCEEEcCCCCCCCccccCCC
Q 011891 80 ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLS-ALCVLDLGDCKSLKSLKLPFD 157 (475)
Q Consensus 80 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~~L~L~~c~~l~~l~~~~~ 157 (475)
.+|..+.++++|++|++++|.....+|..+..+++|++|++++|.++ .+|..+..++ +|+.|++++|.....+|..+.
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 78999999999999999998877789999999999999999999999 8999999998 999999999987667787777
Q ss_pred CCCCCCEEEecCCCCCC-cchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCC---ccCcceec
Q 011891 158 GLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLD 233 (475)
Q Consensus 158 ~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~L~ 233 (475)
.+. |+.|++++|.+++ .|..+..+++|+.|++++|.++..+..+..+++|++|++++|.....+|.. .++|+.|+
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEE
Confidence 777 9999999999986 778899999999999999999866666888999999999999766577753 36788888
Q ss_pred ccccc
Q 011891 234 AQHCT 238 (475)
Q Consensus 234 i~~c~ 238 (475)
++++.
T Consensus 275 Ls~N~ 279 (313)
T 1ogq_A 275 VSFNN 279 (313)
T ss_dssp CCSSE
T ss_pred CcCCc
Confidence 88764
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.4e-22 Score=217.58 Aligned_cols=254 Identities=17% Similarity=0.176 Sum_probs=185.4
Q ss_pred CCCCCcccccc--cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCC-CcEEEcccc
Q 011891 1 MPHSNIEQLSE--SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGN-IEKILLDGT 76 (475)
Q Consensus 1 l~~s~l~~L~~--~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~-L~~L~L~~~ 76 (475)
|++|++..+|. .++.+++|++|++++|..-..+| .+.++++|++|++++| .+..+|. +..+++ |++|++++|
T Consensus 312 L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp CCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSS
T ss_pred CCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCC
Confidence 34566666666 66677777777777654333555 3556666777777764 3446665 666777 888888888
Q ss_pred CCcccCcccCCCC--CCcEEeeeCCCCCCccccccC-------CCCCCcEEEeeCcCCccCCccc-CCCCCcCEEEcCCC
Q 011891 77 AIEELPSSIGCLS--RLLELNLGDCKNLKTLPSSLC-------KLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDC 146 (475)
Q Consensus 77 ~i~~lp~~i~~l~--~L~~L~L~~c~~l~~lp~~l~-------~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~L~~c 146 (475)
.++.+|..+..+. +|++|++++|.....+|..+. .+++|++|++++|.++.+|..+ ..+++|+.|++++|
T Consensus 388 ~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred cCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence 7777777666544 788888888776666776666 6778888888888888888764 45888999999988
Q ss_pred CCCCccccCCCC--------CCCCCEEEecCCCCCCcchhhC--CCCCCceeEeccCCccccchHHhhcCCcccccccc-
Q 011891 147 KSLKSLKLPFDG--------LYSLTYLYLTDCAITELPESLG--LLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY- 215 (475)
Q Consensus 147 ~~l~~l~~~~~~--------l~~L~~L~L~~~~l~~lp~~l~--~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~- 215 (475)
... .+|..... +++|+.|+|++|+++++|..+. .+++|+.|+|++|+++.+|..+..+++|+.|++++
T Consensus 468 ~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 468 MLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp CCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSC
T ss_pred CCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCC
Confidence 744 66654322 2389999999999999998887 89999999999999998999999999999999955
Q ss_pred -----cccccccCCC---ccCcceecccccccCccccCCCCCcceeEEEecCCc
Q 011891 216 -----CERLQSLPKL---PCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENF 261 (475)
Q Consensus 216 -----c~~l~~lp~l---~~~L~~L~i~~c~~L~~l~~~~~~~~~~~l~~~~c~ 261 (475)
|...+.+|.. .++|+.|++++|. ++.++.... .....+.+.++.
T Consensus 547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~-~~L~~L~Ls~N~ 598 (636)
T 4eco_A 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT-PNISVLDIKDNP 598 (636)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC-TTCCEEECCSCT
T ss_pred cccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh-CcCCEEECcCCC
Confidence 4445566642 4678999998875 477776433 445667776664
No 11
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=1.9e-22 Score=196.71 Aligned_cols=231 Identities=21% Similarity=0.279 Sum_probs=186.3
Q ss_pred CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC---cC-cCCCCCCcEEEccccC
Q 011891 2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL---PE-ISSAGNIEKILLDGTA 77 (475)
Q Consensus 2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~---p~-i~~l~~L~~L~L~~~~ 77 (475)
.+++++.+|.++. ++|++|+|++|. ++.+|. ..+.++++|++|+|++| .+..+ |. +..+++|++|++++|.
T Consensus 15 ~~~~l~~ip~~~~--~~l~~L~L~~n~-l~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 15 NSKGLTSVPTGIP--SSATRLELESNK-LQSLPH-GVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp CSSCCSSCCSCCC--TTCCEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CCCCcccCCCCCC--CCCCEEECCCCc-cCccCH-hHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCc
Confidence 4567888887654 789999999964 667765 34678999999999996 45444 23 5578999999999999
Q ss_pred CcccCcccCCCCCCcEEeeeCCCCCCccc--cccCCCCCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCCCCCC-ccc
Q 011891 78 IEELPSSIGCLSRLLELNLGDCKNLKTLP--SSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLK-SLK 153 (475)
Q Consensus 78 i~~lp~~i~~l~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~-~l~ 153 (475)
+..+|..+..+++|++|++++|. +..++ ..+..+++|++|++++|.+... +..+..+++|++|++++|.... .+|
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 99999889999999999999965 44444 4688899999999999998854 5568889999999999987554 467
Q ss_pred cCCCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCccccch-HHhhcCCcccccccccccccccC----CCcc
Q 011891 154 LPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCERLQSLP----KLPC 227 (475)
Q Consensus 154 ~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~l~~c~~l~~lp----~l~~ 227 (475)
..+..+++|+.|++++|.++++ |..+..+++|+.|++++|.++.++. .+..+++|+.|++++|......| .+|+
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 248 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence 7788999999999999999985 6788899999999999999987764 67889999999999996544433 2456
Q ss_pred Ccceecccccc
Q 011891 228 NLYWLDAQHCT 238 (475)
Q Consensus 228 ~L~~L~i~~c~ 238 (475)
+|+.|++++++
T Consensus 249 ~L~~L~L~~N~ 259 (306)
T 2z66_A 249 SLAFLNLTQND 259 (306)
T ss_dssp TCCEEECTTCC
T ss_pred cCCEEEccCCC
Confidence 77788777653
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2.2e-22 Score=221.22 Aligned_cols=234 Identities=20% Similarity=0.261 Sum_probs=169.7
Q ss_pred CCcccccccccCCCCCcEEeccCCCCccC------------------CCChhhcc--CCCCCcEEEEeCCCCCCCCcC-c
Q 011891 4 SNIEQLSESVQHHGKLNQIIMAACNIFTK------------------TPNPSLIQ--HLNKLVILNLSGCSKLKSLPE-I 62 (475)
Q Consensus 4 s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~------------------~p~~~~~~--~l~~L~~L~L~~c~~l~~~p~-i 62 (475)
|++..+|.++.++++|++|+|++|. ++. +|. .++ ++++|++|+|++|...+.+|. +
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~--~l~f~~L~~L~~L~Ls~N~l~~~iP~~l 511 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENE--ELSWSNLKDLTDVELYNCPNMTQLPDFL 511 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEESCTTCCSCCGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCCh--hhhhccCCCCCEEECcCCCCCccChHHH
Confidence 5677788899999999999999976 454 665 455 899999999999888888887 8
Q ss_pred CCCCCCcEEEccccC-Ccc--cCcccCCCC-------CCcEEeeeCCCCCCcccc--ccCCCCCCcEEEeeCcCCccCCc
Q 011891 63 SSAGNIEKILLDGTA-IEE--LPSSIGCLS-------RLLELNLGDCKNLKTLPS--SLCKLKSLEEICLTGSAIEELPS 130 (475)
Q Consensus 63 ~~l~~L~~L~L~~~~-i~~--lp~~i~~l~-------~L~~L~L~~c~~l~~lp~--~l~~l~~L~~L~l~~~~i~~lp~ 130 (475)
+.+++|++|+|++|. ++. +|..+++++ +|++|++++|... .+|. .++++++|+.|++++|.++.+|
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp- 589 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE- 589 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-
Confidence 888999999999887 774 776665554 8888888886544 8887 7888888888888888888887
Q ss_pred ccCCCCCcCEEEcCCCCCCCccccCCCCCCC-CCEEEecCCCCCCcchhhCCCC--------------------------
Q 011891 131 PIECLSALCVLDLGDCKSLKSLKLPFDGLYS-LTYLYLTDCAITELPESLGLLS-------------------------- 183 (475)
Q Consensus 131 ~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~-L~~L~L~~~~l~~lp~~l~~l~-------------------------- 183 (475)
.+..+++|+.|++++|... .+|..+.++++ |+.|+|++|.++.+|..+..++
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 7788888888888887744 67766777777 8888888887777665544332
Q ss_pred -----CCceeEeccCCccccchHHh-hcCCcccccccccccccccCCC-c----------cCcceecccccccCccccC
Q 011891 184 -----SLEELYLERNNFERIPESII-RLSKLSSLLVSYCERLQSLPKL-P----------CNLYWLDAQHCTTLESLSG 245 (475)
Q Consensus 184 -----~L~~L~L~~n~l~~lp~~i~-~l~~L~~L~l~~c~~l~~lp~l-~----------~~L~~L~i~~c~~L~~l~~ 245 (475)
+|+.|++++|+++.+|..+. .+++|+.|++++| .+..+|.. . ++|+.|++++| .++.++.
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~ 745 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSD 745 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCG
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchH
Confidence 45556666666665665443 5667777777666 34455531 1 15666777665 4545544
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=6.5e-22 Score=203.53 Aligned_cols=259 Identities=21% Similarity=0.171 Sum_probs=183.7
Q ss_pred CCCCCcccc-cccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCC
Q 011891 1 MPHSNIEQL-SESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAI 78 (475)
Q Consensus 1 l~~s~l~~L-~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i 78 (475)
|++|+|+.+ +..+..+++|++|+|++|.....++. ..+.++++|++|+|++|......|. ++.+++|++|++++|.+
T Consensus 37 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 115 (455)
T 3v47_A 37 LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN-NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL 115 (455)
T ss_dssp CCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECT-TTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ecCCccCcCChhHhccCccccEEECcCCcccceECc-ccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCC
Confidence 467778777 56788888888888888765444433 3567788888888888654434454 77888888888888888
Q ss_pred cc-cCcc--cCCCCCCcEEeeeCCCCCCccccc-cCCCCCCcEEEeeCcCCccCCc-ccC--------------------
Q 011891 79 EE-LPSS--IGCLSRLLELNLGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEELPS-PIE-------------------- 133 (475)
Q Consensus 79 ~~-lp~~--i~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~~lp~-~i~-------------------- 133 (475)
+. ++.. +..+++|++|++++|......|.. +.++++|++|++++|.++.++. .+.
T Consensus 116 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~ 195 (455)
T 3v47_A 116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195 (455)
T ss_dssp BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTC
T ss_pred CccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccccc
Confidence 74 3433 778888888888887655555654 6788888888888887764422 221
Q ss_pred --------------CCCCcCEEEcCCCC----------------------------------------------------
Q 011891 134 --------------CLSALCVLDLGDCK---------------------------------------------------- 147 (475)
Q Consensus 134 --------------~l~~L~~L~L~~c~---------------------------------------------------- 147 (475)
.+++|+.|++++|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (455)
T 3v47_A 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS 275 (455)
T ss_dssp STTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTS
T ss_pred chhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccccccc
Confidence 22445555555553
Q ss_pred -----------CCCccccCCCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCcccc-chHHhhcCCccccccc
Q 011891 148 -----------SLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVS 214 (475)
Q Consensus 148 -----------~l~~l~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~ 214 (475)
.....|..+..+++|+.|++++|.++++ |..+..+++|+.|++++|.++.+ |..+..+++|+.|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 2222344567889999999999999985 66889999999999999999876 5678999999999999
Q ss_pred ccccccccCC---CccCcceecccccccCccccCCCC-C-cceeEEEecCCc
Q 011891 215 YCERLQSLPK---LPCNLYWLDAQHCTTLESLSGLFS-S-YKCVFFYLNENF 261 (475)
Q Consensus 215 ~c~~l~~lp~---l~~~L~~L~i~~c~~L~~l~~~~~-~-~~~~~l~~~~c~ 261 (475)
+|......|. -.++|+.|+++++ .++.++.... . .....+.+.++.
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 9964433343 2478999999886 5666655321 1 234556665443
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=1.5e-21 Score=192.45 Aligned_cols=233 Identities=18% Similarity=0.215 Sum_probs=169.6
Q ss_pred CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcc
Q 011891 2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEE 80 (475)
Q Consensus 2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~ 80 (475)
+++.++.+|..+. ++|++|+|++|. ++.++. ..+.++++|++|+|++|......|. +..+++|++|++++|.++.
T Consensus 39 ~~~~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (330)
T 1xku_A 39 SDLGLEKVPKDLP--PDTALLDLQNNK-ITEIKD-GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114 (330)
T ss_dssp TTSCCCSCCCSCC--TTCCEEECCSSC-CCCBCT-TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB
T ss_pred cCCCccccCccCC--CCCeEEECCCCc-CCEeCh-hhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc
Confidence 4566777776553 688889998864 555553 3467888899999988644333355 7788899999999888888
Q ss_pred cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc---cCCcccCCCCCcCEEEcCCCCCCCccccCCC
Q 011891 81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE---ELPSPIECLSALCVLDLGDCKSLKSLKLPFD 157 (475)
Q Consensus 81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~ 157 (475)
+|..+. ++|++|++++|......+..+..+++|++|++++|.++ ..+..+..+++|+.|++++|. +..+|...
T Consensus 115 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~- 190 (330)
T 1xku_A 115 LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL- 190 (330)
T ss_dssp CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSC-
T ss_pred cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccc-
Confidence 887664 78888888887654444556788888888888888876 345667788888888888876 44455443
Q ss_pred CCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccccccccCCC---ccCccee
Q 011891 158 GLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWL 232 (475)
Q Consensus 158 ~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~L 232 (475)
.++|+.|++++|.++++ |..+..+++|+.|++++|.++.++ ..+..+++|+.|++++| .++.+|.. .++|+.|
T Consensus 191 -~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L 268 (330)
T 1xku_A 191 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVV 268 (330)
T ss_dssp -CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEE
T ss_pred -cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEE
Confidence 26788888888888874 567788888888888888887665 36778888888888887 45566642 3667888
Q ss_pred cccccccCccccC
Q 011891 233 DAQHCTTLESLSG 245 (475)
Q Consensus 233 ~i~~c~~L~~l~~ 245 (475)
+++++ .++.++.
T Consensus 269 ~l~~N-~i~~~~~ 280 (330)
T 1xku_A 269 YLHNN-NISAIGS 280 (330)
T ss_dssp ECCSS-CCCCCCT
T ss_pred ECCCC-cCCccCh
Confidence 88775 3555443
No 15
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=7.9e-22 Score=202.38 Aligned_cols=228 Identities=20% Similarity=0.299 Sum_probs=178.4
Q ss_pred CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCc
Q 011891 2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIE 79 (475)
Q Consensus 2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~ 79 (475)
.+.+++.+|.++. ++++.|+|++|. ++.++. ..+.++++|++|+|++| .+..++. +..+++|++|+|++|.++
T Consensus 51 ~~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 51 VRKNLREVPDGIS--TNTRLLNLHENQ-IQIIKV-NSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp CSCCCSSCCSCCC--TTCSEEECCSCC-CCEECT-TTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred CCCCcCcCCCCCC--CCCcEEEccCCc-CCeeCH-HHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCC
Confidence 3567888887764 789999999864 555543 45788999999999996 4566553 778999999999999999
Q ss_pred ccCc-ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeC-cCCccCCc-ccCCCCCcCEEEcCCCCCCCccccCC
Q 011891 80 ELPS-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG-SAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPF 156 (475)
Q Consensus 80 ~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~~ 156 (475)
.++. .+..+++|++|+|++|......+..+..+++|++|++++ +.+..++. .+..+++|+.|++++|. +..+| .+
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~ 203 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NL 203 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC-CC
T ss_pred eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc-cc
Confidence 8876 588899999999999764433344678899999999998 45666665 57889999999999986 55666 46
Q ss_pred CCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccccccccCC-C---ccCcc
Q 011891 157 DGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPK-L---PCNLY 230 (475)
Q Consensus 157 ~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~-l---~~~L~ 230 (475)
..+++|+.|+|++|.++++ |..+..+++|+.|++++|+++.++ ..+..+++|+.|+|++| .++.+|. . .++|+
T Consensus 204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCC
T ss_pred CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCC
Confidence 7889999999999999985 778889999999999999998664 56788999999999998 4555553 1 24556
Q ss_pred eeccccc
Q 011891 231 WLDAQHC 237 (475)
Q Consensus 231 ~L~i~~c 237 (475)
.|+++++
T Consensus 283 ~L~L~~N 289 (440)
T 3zyj_A 283 RIHLHHN 289 (440)
T ss_dssp EEECCSS
T ss_pred EEEcCCC
Confidence 6665553
No 16
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.7e-21 Score=200.81 Aligned_cols=227 Identities=18% Similarity=0.203 Sum_probs=131.7
Q ss_pred CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891 1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE 80 (475)
Q Consensus 1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~ 80 (475)
+++++++.++ ++..+++|++|+|++|. ++.+| ++++++|++|++++|. +..+| ++.+++|++|++++|.++.
T Consensus 49 Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~~L~L~~N~l~~ 120 (457)
T 3bz5_A 49 CHNSSITDMT-GIEKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNK-LTNLD-VTPLTKLTYLNCDTNKLTK 120 (457)
T ss_dssp CCSSCCCCCT-TGGGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEECCSSCCSC
T ss_pred ccCCCcccCh-hhcccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCC-Cceee-cCCCCcCCEEECCCCcCCe
Confidence 3456666664 56666777777776653 44443 3455555555555532 33333 4444555555555554444
Q ss_pred cCc-------------------ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEE
Q 011891 81 LPS-------------------SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVL 141 (475)
Q Consensus 81 lp~-------------------~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 141 (475)
++- .++.+++|++|++++|..++.+ .++.+++|++|++++|.++.+| +..+++|+.|
T Consensus 121 l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L 196 (457)
T 3bz5_A 121 LDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRL 196 (457)
T ss_dssp CCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEE
T ss_pred ecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEE
Confidence 430 1444555555555555444444 3566777777777777777766 6677778888
Q ss_pred EcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccch-HHhhcC-------Ccccccc
Q 011891 142 DLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE-SIIRLS-------KLSSLLV 213 (475)
Q Consensus 142 ~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~-------~L~~L~l 213 (475)
++++|.. ..+ .+..+++|+.|++++|+++++| ++.+++|+.|++++|+++.+|. .+..+. +|+.|++
T Consensus 197 ~l~~N~l-~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l 271 (457)
T 3bz5_A 197 NCDTNNI-TKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDL 271 (457)
T ss_dssp ECCSSCC-SCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCC
T ss_pred ECcCCcC-Cee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEEC
Confidence 8777763 333 3567788888888888888876 6778888888888888776551 222221 3344455
Q ss_pred cccccccccCC-CccCcceecccccccCcccc
Q 011891 214 SYCERLQSLPK-LPCNLYWLDAQHCTTLESLS 244 (475)
Q Consensus 214 ~~c~~l~~lp~-l~~~L~~L~i~~c~~L~~l~ 244 (475)
++|..+..+|. ..++|+.|++++|..++.++
T Consensus 272 ~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 272 THNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp TTCTTCCEEECTTCTTCCCCCCTTCTTCCEEE
T ss_pred CCCccCCcccccccccCCEEECCCCcccceec
Confidence 55544444432 12455555555555444433
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=7.7e-23 Score=219.57 Aligned_cols=246 Identities=19% Similarity=0.199 Sum_probs=205.4
Q ss_pred cccccc--CCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCC--CCcC-cCCC------CCCcEEEccccC
Q 011891 9 LSESVQ--HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLK--SLPE-ISSA------GNIEKILLDGTA 77 (475)
Q Consensus 9 L~~~~~--~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~--~~p~-i~~l------~~L~~L~L~~~~ 77 (475)
+|+.+. ++++|++|+|++|.....+|. .++++++|++|++++|..+. .+|. ++.+ ++|++|++++|.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPT--FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCT--TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChH--HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 899988 999999999999988888884 68899999999999987455 4776 6555 999999999999
Q ss_pred CcccCc--ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCC-cCEEEcCCCCCCCcccc
Q 011891 78 IEELPS--SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSA-LCVLDLGDCKSLKSLKL 154 (475)
Q Consensus 78 i~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~-L~~L~L~~c~~l~~l~~ 154 (475)
++.+|. .++++++|++|++++|.....+| .++.+++|++|++++|.++.+|..+..+++ |++|++++|... .+|.
T Consensus 317 l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 999999 99999999999999987666899 889999999999999999999999999999 999999999844 7887
Q ss_pred CCCCCC--CCCEEEecCCCCCC-cchhhC-------CCCCCceeEeccCCccccchHH-hhcCCcccccccccccccccC
Q 011891 155 PFDGLY--SLTYLYLTDCAITE-LPESLG-------LLSSLEELYLERNNFERIPESI-IRLSKLSSLLVSYCERLQSLP 223 (475)
Q Consensus 155 ~~~~l~--~L~~L~L~~~~l~~-lp~~l~-------~l~~L~~L~L~~n~l~~lp~~i-~~l~~L~~L~l~~c~~l~~lp 223 (475)
.+..+. +|+.|++++|.++. +|..+. .+++|+.|++++|+++.+|..+ ..+++|+.|++++|. ++.+|
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSBCC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCCcC
Confidence 766544 89999999999987 677677 7789999999999999999765 458999999999985 44777
Q ss_pred CC-cc----------CcceecccccccCccccCCCC---CcceeEEEecCC
Q 011891 224 KL-PC----------NLYWLDAQHCTTLESLSGLFS---SYKCVFFYLNEN 260 (475)
Q Consensus 224 ~l-~~----------~L~~L~i~~c~~L~~l~~~~~---~~~~~~l~~~~c 260 (475)
.. .. +|+.|+++++ .++.++.... -.....+.+.++
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSS
T ss_pred HHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCC
Confidence 52 11 8999999887 4656665432 123455666555
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=2e-21 Score=187.53 Aligned_cols=207 Identities=24% Similarity=0.352 Sum_probs=110.4
Q ss_pred CCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC-cC-cCCCCCCcEEEccccC-Ccc
Q 011891 4 SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTA-IEE 80 (475)
Q Consensus 4 s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~-p~-i~~l~~L~~L~L~~~~-i~~ 80 (475)
+.++.+|.++ .++|++|+++++. ++.++. ..+.++++|++|++++| .+..+ |. +..+++|++|++++|. +..
T Consensus 21 ~~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~-~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~ 95 (285)
T 1ozn_A 21 QGLQAVPVGI--PAASQRIFLHGNR-ISHVPA-ASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRS 95 (285)
T ss_dssp SCCSSCCTTC--CTTCSEEECTTSC-CCEECT-TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred CCcccCCcCC--CCCceEEEeeCCc-CCccCH-HHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccc
Confidence 4455555433 3456666666543 333332 23455566666666654 23333 32 5555666666666664 554
Q ss_pred c-CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCCCCCcccc-CCC
Q 011891 81 L-PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKL-PFD 157 (475)
Q Consensus 81 l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~-~~~ 157 (475)
+ +..+..+++|++|++++|......|..+..+++|++|++++|.++.++.. +..+++|+.|++++|.. ..++. .+.
T Consensus 96 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~ 174 (285)
T 1ozn_A 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFR 174 (285)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTTTTT
T ss_pred cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-cccCHHHhc
Confidence 4 34555566666666666544333344455566666666666666555443 45556666666665542 23332 345
Q ss_pred CCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCccccc-hHHhhcCCccccccccc
Q 011891 158 GLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYC 216 (475)
Q Consensus 158 ~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c 216 (475)
++++|+.|++++|.++++ |..+..+++|+.|++++|+++.++ ..+..+++|+.|++++|
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 555666666666665553 555555666666666666665554 23555556666655555
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=3e-21 Score=199.95 Aligned_cols=241 Identities=21% Similarity=0.244 Sum_probs=156.6
Q ss_pred CCCCCccccc-ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC
Q 011891 1 MPHSNIEQLS-ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA 77 (475)
Q Consensus 1 l~~s~l~~L~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~ 77 (475)
|++|+|+.++ ..+..+++|++|+|++|. ++.++. ..+.++++|++|+|++| .+..+|. +..+++|++|+|++|.
T Consensus 39 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 115 (477)
T 2id5_A 39 LGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEP-GAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENK 115 (477)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSC
T ss_pred CCCCccceECHhHccCCCCCCEEECCCCc-cCEeCh-hhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCc
Confidence 4677888875 578888889999988864 444422 35778888888888885 4666665 5678888888888888
Q ss_pred Cccc-CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcC-----------
Q 011891 78 IEEL-PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLG----------- 144 (475)
Q Consensus 78 i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~----------- 144 (475)
+..+ +..+..+++|++|++++|......|..+..+++|++|++++|.++.++. .+..+++|+.|+++
T Consensus 116 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~ 195 (477)
T 2id5_A 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195 (477)
T ss_dssp CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC
T ss_pred cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh
Confidence 7755 4467777888888887765444445566677777777777776665554 24444555555554
Q ss_pred -------------CCCCCCccccCCCCCCCCCEEEecCCCCCCcc-hhhCCCCCCceeEeccCCccccc-hHHhhcCCcc
Q 011891 145 -------------DCKSLKSLKLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKLS 209 (475)
Q Consensus 145 -------------~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~ 209 (475)
+|..+..++.......+|+.|++++|+++++| ..+..+++|+.|+|++|.++.++ ..+..+++|+
T Consensus 196 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (477)
T 2id5_A 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ 275 (477)
T ss_dssp SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCC
T ss_pred cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCC
Confidence 44444444443333446666666667676665 35667777777777777776555 3466677777
Q ss_pred cccccccccccccCCC---ccCcceecccccccCccccC
Q 011891 210 SLLVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLSG 245 (475)
Q Consensus 210 ~L~l~~c~~l~~lp~l---~~~L~~L~i~~c~~L~~l~~ 245 (475)
.|++++|......|.. .++|+.|+++++ .++.++.
T Consensus 276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 313 (477)
T 2id5_A 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE 313 (477)
T ss_dssp EEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCG
T ss_pred EEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCH
Confidence 7777776433322321 256777777775 4554443
No 20
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=1.3e-21 Score=201.44 Aligned_cols=226 Identities=23% Similarity=0.336 Sum_probs=181.8
Q ss_pred CCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCc-C-cCCCCCCcEEEccccCCcc
Q 011891 3 HSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTAIEE 80 (475)
Q Consensus 3 ~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p-~-i~~l~~L~~L~L~~~~i~~ 80 (475)
+.+++.+|.++. ++|+.|+|++|. ++.++. ..+.++++|++|+|++| .+..++ . +..+++|++|+|++|.++.
T Consensus 63 ~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 137 (452)
T 3zyi_A 63 RRGLSEVPQGIP--SNTRYLNLMENN-IQMIQA-DTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTV 137 (452)
T ss_dssp SSCCSSCCSCCC--TTCSEEECCSSC-CCEECT-TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred CCCcCccCCCCC--CCccEEECcCCc-CceECH-HHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCc
Confidence 456778887654 689999999974 455433 45788999999999996 555554 3 7899999999999999998
Q ss_pred cCcc-cCCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeC-cCCccCCc-ccCCCCCcCEEEcCCCCCCCccccCC
Q 011891 81 LPSS-IGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTG-SAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPF 156 (475)
Q Consensus 81 lp~~-i~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~~ 156 (475)
++.. +..+++|++|+|++|. +..+| ..+.++++|++|++++ +.+..++. .+..+++|+.|++++|. +..+| .+
T Consensus 138 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~ 214 (452)
T 3zyi_A 138 IPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-NL 214 (452)
T ss_dssp CCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-CC
T ss_pred cChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-cc
Confidence 8764 7889999999999976 44554 4688999999999998 56667765 58889999999999987 45555 46
Q ss_pred CCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCcccc-chHHhhcCCcccccccccccccccCC-C---ccCcc
Q 011891 157 DGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK-L---PCNLY 230 (475)
Q Consensus 157 ~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~-l---~~~L~ 230 (475)
..+++|+.|+|++|.++++ |..+..+++|+.|++++|+++.+ +..+..+++|+.|+|++| .++.+|. . .++|+
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCC
T ss_pred cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCC
Confidence 7889999999999999985 77899999999999999999866 467888999999999998 4556653 1 34566
Q ss_pred eeccccc
Q 011891 231 WLDAQHC 237 (475)
Q Consensus 231 ~L~i~~c 237 (475)
.|+++++
T Consensus 294 ~L~L~~N 300 (452)
T 3zyi_A 294 ELHLHHN 300 (452)
T ss_dssp EEECCSS
T ss_pred EEEccCC
Confidence 6666654
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=1.4e-21 Score=192.81 Aligned_cols=224 Identities=19% Similarity=0.245 Sum_probs=133.1
Q ss_pred CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC-cC-cCCCCCCcEEEccccCCc
Q 011891 2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAIE 79 (475)
Q Consensus 2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~-p~-i~~l~~L~~L~L~~~~i~ 79 (475)
++++++.+|..+ .++|+.|++++|. ++.++. ..+.++++|++|++++|. +..+ |. +..+++|++|++++|.++
T Consensus 41 ~~~~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~ 115 (332)
T 2ft3_A 41 SDLGLKAVPKEI--SPDTTLLDLQNND-ISELRK-DDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNHLV 115 (332)
T ss_dssp CSSCCSSCCSCC--CTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSCCC
T ss_pred CCCCccccCCCC--CCCCeEEECCCCc-CCccCH-hHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCcCC
Confidence 456677777655 3577788887754 444432 346677777888887754 4443 44 667777888888777777
Q ss_pred ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc---cCCcccCCCCCcCEEEcCCCCCCCccccCC
Q 011891 80 ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE---ELPSPIECLSALCVLDLGDCKSLKSLKLPF 156 (475)
Q Consensus 80 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~ 156 (475)
.+|..+. ++|++|++++|......+..+..+++|++|++++|.++ ..+..+..+ +|+.|++++|. +..+|..+
T Consensus 116 ~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~ 191 (332)
T 2ft3_A 116 EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDL 191 (332)
T ss_dssp SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSS
T ss_pred ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccc
Confidence 7776654 67777777776433322334677777777777777765 234445555 66666666655 33344332
Q ss_pred CCCCCCCEEEecCCCCCCcc-hhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccccccccCCC---ccCcce
Q 011891 157 DGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYW 231 (475)
Q Consensus 157 ~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~ 231 (475)
. ++|+.|++++|.+++++ ..+..+++|+.|++++|+++.++ ..+..+++|+.|++++| .++.+|.. .++|+.
T Consensus 192 ~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~ 268 (332)
T 2ft3_A 192 P--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQV 268 (332)
T ss_dssp C--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCE
T ss_pred c--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCE
Confidence 2 45666666666665533 44555566666666666665444 24555566666666655 33344431 244555
Q ss_pred eccccc
Q 011891 232 LDAQHC 237 (475)
Q Consensus 232 L~i~~c 237 (475)
|+++++
T Consensus 269 L~l~~N 274 (332)
T 2ft3_A 269 VYLHTN 274 (332)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 555553
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=3.5e-21 Score=211.67 Aligned_cols=254 Identities=17% Similarity=0.164 Sum_probs=176.1
Q ss_pred CCCCCcccccc--cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCC-CcEEEcccc
Q 011891 1 MPHSNIEQLSE--SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGN-IEKILLDGT 76 (475)
Q Consensus 1 l~~s~l~~L~~--~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~-L~~L~L~~~ 76 (475)
|++|++..+|. .+..+++|+.|+|++|. ++.+| .++++++|+.|+|++|. +..+|. +..+++ |++|+|++|
T Consensus 555 Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp---~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE---AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp CCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC---CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSS
T ss_pred eeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch---hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCC
Confidence 34566666666 66666666667666654 33555 35566666677776643 336665 566666 777777777
Q ss_pred CCcccCcccCCCCC--CcEEeeeCCCCCCcccc---ccC--CCCCCcEEEeeCcCCccCCcccC-CCCCcCEEEcCCCCC
Q 011891 77 AIEELPSSIGCLSR--LLELNLGDCKNLKTLPS---SLC--KLKSLEEICLTGSAIEELPSPIE-CLSALCVLDLGDCKS 148 (475)
Q Consensus 77 ~i~~lp~~i~~l~~--L~~L~L~~c~~l~~lp~---~l~--~l~~L~~L~l~~~~i~~lp~~i~-~l~~L~~L~L~~c~~ 148 (475)
.++.+|..+..++. |+.|++++|.....+|. .+. .+++|+.|++++|.++.+|..+. .+++|+.|++++|.
T Consensus 630 ~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~- 708 (876)
T 4ecn_A 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL- 708 (876)
T ss_dssp CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-
T ss_pred CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-
Confidence 66666666555543 67777776654443332 222 33478888888888888887654 78889999999886
Q ss_pred CCccccCCCC--------CCCCCEEEecCCCCCCcchhhC--CCCCCceeEeccCCccccchHHhhcCCcccccccc---
Q 011891 149 LKSLKLPFDG--------LYSLTYLYLTDCAITELPESLG--LLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY--- 215 (475)
Q Consensus 149 l~~l~~~~~~--------l~~L~~L~L~~~~l~~lp~~l~--~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~--- 215 (475)
+..+|..... +++|+.|+|++|+++.+|..+. .+++|+.|+|++|+++.+|..+..+++|+.|+|++
T Consensus 709 L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ 788 (876)
T 4ecn_A 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRD 788 (876)
T ss_dssp CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBC
T ss_pred CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCC
Confidence 4466654422 3389999999999999998887 89999999999999988998899999999999977
Q ss_pred ---cccccccCCC---ccCcceecccccccCccccCCCCCcceeEEEecCCcc
Q 011891 216 ---CERLQSLPKL---PCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFK 262 (475)
Q Consensus 216 ---c~~l~~lp~l---~~~L~~L~i~~c~~L~~l~~~~~~~~~~~l~~~~c~~ 262 (475)
|.....+|.. .++|+.|++++|. +..++.... .....+.+.+|.-
T Consensus 789 ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~-~~L~~LdLs~N~l 839 (876)
T 4ecn_A 789 AEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT-PQLYILDIADNPN 839 (876)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC-SSSCEEECCSCTT
T ss_pred cccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc-CCCCEEECCCCCC
Confidence 4445566642 4678899998875 477776533 3456677777753
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.1e-20 Score=195.66 Aligned_cols=230 Identities=16% Similarity=0.170 Sum_probs=173.0
Q ss_pred CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC-cC-cCCCCCCcEEEccccCCc
Q 011891 2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAIE 79 (475)
Q Consensus 2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~-p~-i~~l~~L~~L~L~~~~i~ 79 (475)
.+.+++.+|.++. ++|+.|+|++|. ++.++. ..+.++++|++|+|++| .+..+ |. +..+++|++|+|++|.++
T Consensus 19 ~~~~l~~ip~~~~--~~l~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 19 HRKRFVAVPEGIP--TETRLLDLGKNR-IKTLNQ-DEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp CSCCCSSCCSCCC--TTCSEEECCSSC-CCEECT-TTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCcCCCCCC--CCCcEEECCCCc-cceECH-hHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCC
Confidence 3567888887664 689999999964 555543 46788999999999997 45554 54 889999999999999999
Q ss_pred ccCcc-cCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCCCCCCccccCCC
Q 011891 80 ELPSS-IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLPFD 157 (475)
Q Consensus 80 ~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~l~~~~~ 157 (475)
.+|.. +.++++|++|+|++|......|..+..+++|++|++++|.++.+ +..+..+++|+.|++++|......+..+.
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 173 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhc
Confidence 98874 68999999999999877666778899999999999999999866 45789999999999999874332222345
Q ss_pred CCCCCCEEEecCCCCCCc-------------------------chhhCCCCCCceeEeccCCccccc-hHHhhcCCcccc
Q 011891 158 GLYSLTYLYLTDCAITEL-------------------------PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSL 211 (475)
Q Consensus 158 ~l~~L~~L~L~~~~l~~l-------------------------p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L 211 (475)
++++|+.|++++|.+..+ |.......+|+.|++++|+++.+| ..+..+++|+.|
T Consensus 174 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 253 (477)
T 2id5_A 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253 (477)
T ss_dssp TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEE
T ss_pred ccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCee
Confidence 556666666666655543 333333346666777777777777 467788888888
Q ss_pred cccccccccccCC----CccCcceeccccc
Q 011891 212 LVSYCERLQSLPK----LPCNLYWLDAQHC 237 (475)
Q Consensus 212 ~l~~c~~l~~lp~----l~~~L~~L~i~~c 237 (475)
++++|. ++.++. -.++|+.|+++++
T Consensus 254 ~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 254 NLSYNP-ISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp ECCSSC-CCEECTTSCTTCTTCCEEECCSS
T ss_pred ECCCCc-CCccChhhccccccCCEEECCCC
Confidence 888875 444432 1356788887765
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=7.8e-21 Score=187.31 Aligned_cols=215 Identities=24% Similarity=0.390 Sum_probs=124.5
Q ss_pred CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCccc-CcccCCCCCCcEE
Q 011891 18 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLEL 94 (475)
Q Consensus 18 ~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L 94 (475)
+|+.++++++ .++.+|. .+ .+.|+.|++++| .+..++. +..+++|++|++++|.++.+ |..+..+++|++|
T Consensus 32 ~l~~l~~~~~-~l~~lp~--~~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPK--DL--PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTS-CCCSCCC--SC--CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCC-CccccCc--cC--CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 5666666653 3455553 11 245666666664 3444443 55666666666666666655 5566666666666
Q ss_pred eeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCC--ccccCCCCCCCCCEEEecCCC
Q 011891 95 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLK--SLKLPFDGLYSLTYLYLTDCA 171 (475)
Q Consensus 95 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~--~l~~~~~~l~~L~~L~L~~~~ 171 (475)
++++|. ++.+|..+. ++|++|++++|.++.++. .+..+++|+.|++++|.... ..+..+.++++|+.|++++|.
T Consensus 106 ~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 666643 445555443 566666666666665554 35666666666666665422 233344566666666666666
Q ss_pred CCCcchhhCCCCCCceeEeccCCcccc-chHHhhcCCcccccccccccccccCC--C--ccCcceecccccccCccccC
Q 011891 172 ITELPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK--L--PCNLYWLDAQHCTTLESLSG 245 (475)
Q Consensus 172 l~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~--l--~~~L~~L~i~~c~~L~~l~~ 245 (475)
++++|..+. ++|+.|++++|.++.+ |..+..+++|+.|++++|. ++.++. + .++|+.|+++++ .++.++.
T Consensus 183 l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~ 257 (330)
T 1xku_A 183 ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPG 257 (330)
T ss_dssp CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCT
T ss_pred cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccCCh
Confidence 666655433 5666666666666544 3556666666666666664 222221 1 245666666665 3444444
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=4.5e-22 Score=194.06 Aligned_cols=215 Identities=17% Similarity=0.242 Sum_probs=182.4
Q ss_pred CCCCCccccccc-ccCCCCCcEEeccCCCCccCCC-ChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccC
Q 011891 1 MPHSNIEQLSES-VQHHGKLNQIIMAACNIFTKTP-NPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTA 77 (475)
Q Consensus 1 l~~s~l~~L~~~-~~~l~~L~~L~Ls~~~~l~~~p-~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~ 77 (475)
|++++++.++.+ ++.+++|++|+|++|. ++... ....+..+++|++|++++| .+..+|. +..+++|++|++++|.
T Consensus 35 L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n~ 112 (306)
T 2z66_A 35 LESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSN 112 (306)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSE
T ss_pred CCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEECCCCc
Confidence 567889999876 6899999999999974 33321 1134557899999999996 4666776 8899999999999999
Q ss_pred CcccCc--ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCcc--CCcccCCCCCcCEEEcCCCCCCCccc
Q 011891 78 IEELPS--SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE--LPSPIECLSALCVLDLGDCKSLKSLK 153 (475)
Q Consensus 78 i~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~L~~c~~l~~l~ 153 (475)
++.++. .+..+++|++|++++|......+..+..+++|++|++++|.++. +|..+..+++|+.|++++|......|
T Consensus 113 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 192 (306)
T 2z66_A 113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192 (306)
T ss_dssp EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH
Confidence 998774 78899999999999987766777788999999999999999985 78899999999999999998665557
Q ss_pred cCCCCCCCCCEEEecCCCCCCcch-hhCCCCCCceeEeccCCccc-cchHHhhcC-Ccccccccccc
Q 011891 154 LPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFER-IPESIIRLS-KLSSLLVSYCE 217 (475)
Q Consensus 154 ~~~~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~-lp~~i~~l~-~L~~L~l~~c~ 217 (475)
..+..+++|+.|++++|.+++++. .+..+++|+.|++++|+++. .|..+..++ +|+.|++++|+
T Consensus 193 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 778899999999999999999654 68899999999999999975 456777774 99999999985
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1.2e-21 Score=208.98 Aligned_cols=249 Identities=20% Similarity=0.213 Sum_probs=188.2
Q ss_pred CCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCccc-
Q 011891 3 HSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEEL- 81 (475)
Q Consensus 3 ~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~l- 81 (475)
++.++.++ ++..+++|+.|++++|.. +.+|. + .+++|++|++++|..+..+ .+..+++|++|++++|.++.+
T Consensus 294 ~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~---~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~ 366 (606)
T 3vq2_A 294 GVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT---L-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSG 366 (606)
T ss_dssp SCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC---C-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEE
T ss_pred Cccchhhh-hccccccCCEEEcccccC-ccccc---C-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCc
Confidence 45555565 667777777777777655 66664 3 6777888888877555444 456788888888888887755
Q ss_pred --CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc--ccCCCCCcCEEEcCCCCCCCccccCCC
Q 011891 82 --PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS--PIECLSALCVLDLGDCKSLKSLKLPFD 157 (475)
Q Consensus 82 --p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~l~~~~~ 157 (475)
+..+..+++|++|++++|. +..+|..+..+++|++|++++|.+...+. .+..+++|+.|++++|......|..+.
T Consensus 367 ~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 445 (606)
T 3vq2_A 367 CCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445 (606)
T ss_dssp ECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred chhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc
Confidence 6778888899999998865 56677788889999999999998886654 678889999999999887666777788
Q ss_pred CCCCCCEEEecCCCCCC--cchhhCCCCCCceeEeccCCcccc-chHHhhcCCcccccccccccccccCCC---ccCcce
Q 011891 158 GLYSLTYLYLTDCAITE--LPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYW 231 (475)
Q Consensus 158 ~l~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~ 231 (475)
++++|+.|++++|.+++ +|..++.+++|+.|++++|+++.+ |..+..+++|+.|++++|+.....|.. .++|+.
T Consensus 446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence 88999999999998886 677888999999999999998755 467888999999999998644443432 367889
Q ss_pred ecccccccCccccCCCCCc--ceeEEEecCC
Q 011891 232 LDAQHCTTLESLSGLFSSY--KCVFFYLNEN 260 (475)
Q Consensus 232 L~i~~c~~L~~l~~~~~~~--~~~~l~~~~c 260 (475)
|++++|. ++.++...... ....+.+.++
T Consensus 526 L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 526 LDCSFNR-IETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp EECTTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred EECCCCc-CcccCHhHhhhcccCcEEEccCC
Confidence 9998874 77776642222 2455666544
No 27
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=6.4e-21 Score=183.94 Aligned_cols=195 Identities=24% Similarity=0.304 Sum_probs=166.4
Q ss_pred CCCCCccccc-ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCc-C-cCCCCCCcEEEccccC
Q 011891 1 MPHSNIEQLS-ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTA 77 (475)
Q Consensus 1 l~~s~l~~L~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p-~-i~~l~~L~~L~L~~~~ 77 (475)
|++++|+.++ +.+..+++|++|+|++|. ++.++. ..+.++++|++|++++|..++.++ . +..+++|++|++++|.
T Consensus 39 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~ 116 (285)
T 1ozn_A 39 LHGNRISHVPAASFRACRNLTILWLHSNV-LARIDA-AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116 (285)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCH-hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc
Confidence 4678888887 468999999999999974 555432 367889999999999987677774 3 7899999999999999
Q ss_pred Cccc-CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCccccC
Q 011891 78 IEEL-PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKLP 155 (475)
Q Consensus 78 i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~ 155 (475)
+..+ +..+..+++|++|++++|......+..+..+++|++|++++|.++.+|. .+..+++|+.|++++|......|..
T Consensus 117 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 196 (285)
T 1ozn_A 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH
Confidence 9977 5578899999999999976544444558899999999999999998876 4889999999999999876666778
Q ss_pred CCCCCCCCEEEecCCCCCCcc-hhhCCCCCCceeEeccCCccc
Q 011891 156 FDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFER 197 (475)
Q Consensus 156 ~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~ 197 (475)
+..+++|+.|++++|.+++++ ..+..+++|+.|++++|.+..
T Consensus 197 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 889999999999999999976 458999999999999999863
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=6.1e-21 Score=189.21 Aligned_cols=230 Identities=20% Similarity=0.295 Sum_probs=183.1
Q ss_pred CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891 1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE 80 (475)
Q Consensus 1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~ 80 (475)
|++++++.++ .+..+++|++|++++|. ++.++. +.++++|+.|++++|..+..++.+..+++|++|++++|.+..
T Consensus 95 L~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~ 169 (347)
T 4fmz_A 95 IGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD 169 (347)
T ss_dssp CCSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred ccCCcccCch-HHcCCCcCCEEECcCCc-ccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCC
Confidence 4677888874 68999999999999964 555543 778999999999999888888889999999999999999887
Q ss_pred cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCC
Q 011891 81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLY 160 (475)
Q Consensus 81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~ 160 (475)
++. +..+++|++|++++|. +..++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.. ..++. +..++
T Consensus 170 ~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l-~~~~~-~~~l~ 243 (347)
T 4fmz_A 170 VTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKI-TDLSP-LANLS 243 (347)
T ss_dssp CGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC-CCCGG-GTTCT
T ss_pred chh-hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCcc-CCCcc-hhcCC
Confidence 776 7889999999999875 555654 7788899999999988887766 77888899999988874 33443 67888
Q ss_pred CCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCC---CccCcceeccccc
Q 011891 161 SLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK---LPCNLYWLDAQHC 237 (475)
Q Consensus 161 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~---l~~~L~~L~i~~c 237 (475)
+|+.|++++|.+++++ .+..+++|+.|++++|+++.++ .+..+++|+.|++++|......+. -.++|+.|++++|
T Consensus 244 ~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 244 QLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp TCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred CCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 8999999999888874 5788889999999999888875 577888899999988854333322 2367888888887
Q ss_pred ccCcccc
Q 011891 238 TTLESLS 244 (475)
Q Consensus 238 ~~L~~l~ 244 (475)
. ++.++
T Consensus 322 ~-l~~~~ 327 (347)
T 4fmz_A 322 H-ITDIR 327 (347)
T ss_dssp S-CCCCG
T ss_pred c-ccccc
Confidence 5 44443
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=194.25 Aligned_cols=190 Identities=20% Similarity=0.213 Sum_probs=132.4
Q ss_pred CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC-cC-cCCCCCCcEEEccccCCc
Q 011891 2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAIE 79 (475)
Q Consensus 2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~-p~-i~~l~~L~~L~L~~~~i~ 79 (475)
++++++.+|.++. ++|++|++++|. ++.++. ..+.++++|++|++++| .+..+ |. +..+++|++|++++|.++
T Consensus 39 ~~~~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 39 SSGSLNSIPSGLT--EAVKSLDLSNNR-ITYISN-SDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp CSTTCSSCCTTCC--TTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCccccccccc--ccCcEEECCCCc-CcccCH-HHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 4566777776554 478888888754 455543 34667778888888875 44444 33 677788888888888887
Q ss_pred ccCcc-cCCCCCCcEEeeeCCCCCCcccc--ccCCCCCCcEEEeeCc-CCccC-CcccCCCCCcCEEEcCCCCCCCcccc
Q 011891 80 ELPSS-IGCLSRLLELNLGDCKNLKTLPS--SLCKLKSLEEICLTGS-AIEEL-PSPIECLSALCVLDLGDCKSLKSLKL 154 (475)
Q Consensus 80 ~lp~~-i~~l~~L~~L~L~~c~~l~~lp~--~l~~l~~L~~L~l~~~-~i~~l-p~~i~~l~~L~~L~L~~c~~l~~l~~ 154 (475)
.++.. ++++++|++|++++|. ++.+|. .+..+++|++|++++| .++.+ +..+..+++|++|++++|......|.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred cCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 77765 6778888888888753 445655 5677788888888877 46655 34677778888888887775555566
Q ss_pred CCCCCCCCCEEEecCCCCCCcchhh-CCCCCCceeEeccCCccc
Q 011891 155 PFDGLYSLTYLYLTDCAITELPESL-GLLSSLEELYLERNNFER 197 (475)
Q Consensus 155 ~~~~l~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L~L~~n~l~~ 197 (475)
.+..+++|+.|++++|.++.+|..+ ..+++|+.|++++|.++.
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence 6777777888888888777765543 346777778777777654
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=6.3e-21 Score=199.67 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=68.5
Q ss_pred CCCCCccccc-ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCc
Q 011891 1 MPHSNIEQLS-ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIE 79 (475)
Q Consensus 1 l~~s~l~~L~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~ 79 (475)
|++|+|+.++ ..+..+++|++|+|++|. ++.++. ..+.++++|++|+|++| .+..+|.. .+++|++|++++|.++
T Consensus 28 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l~~L~~L~L~~N~l~ 103 (520)
T 2z7x_B 28 ISQNYISELWTSDILSLSKLRILIISHNR-IQYLDI-SVFKFNQELEYLDLSHN-KLVKISCH-PTVNLKHLDLSFNAFD 103 (520)
T ss_dssp CCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEG-GGGTTCTTCCEEECCSS-CCCEEECC-CCCCCSEEECCSSCCS
T ss_pred CCCCcccccChhhccccccccEEecCCCc-cCCcCh-HHhhcccCCCEEecCCC-ceeecCcc-ccCCccEEeccCCccc
Confidence 4667777776 567788888888888864 344321 35677888888888885 55667766 7788888888888777
Q ss_pred c--cCcccCCCCCCcEEeeeCCC
Q 011891 80 E--LPSSIGCLSRLLELNLGDCK 100 (475)
Q Consensus 80 ~--lp~~i~~l~~L~~L~L~~c~ 100 (475)
. +|..++++++|++|++++|.
T Consensus 104 ~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 104 ALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp SCCCCGGGGGCTTCCEEEEEESS
T ss_pred cccchhhhccCCcceEEEecCcc
Confidence 5 45677777777777777754
No 31
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=6.3e-22 Score=197.10 Aligned_cols=233 Identities=18% Similarity=0.195 Sum_probs=188.3
Q ss_pred CCCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC
Q 011891 1 MPHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA 77 (475)
Q Consensus 1 l~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~ 77 (475)
|++|+|+.++. .+..+++|++|++++| .++.++. ..+.++++|++|++++| .+..+|. +..+++|++|++++|.
T Consensus 59 l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 135 (353)
T 2z80_A 59 LSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEE-DSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNP 135 (353)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCC
T ss_pred CCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCH-hhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCC
Confidence 46788998886 7899999999999997 4555543 35788999999999995 5667776 7899999999999999
Q ss_pred CcccCc--ccCCCCCCcEEeeeCCCCCCcc-ccccCCCCCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCCCCCCccc
Q 011891 78 IEELPS--SIGCLSRLLELNLGDCKNLKTL-PSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLK 153 (475)
Q Consensus 78 i~~lp~--~i~~l~~L~~L~L~~c~~l~~l-p~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~l~ 153 (475)
++.+|. .+..+++|++|++++|..+..+ +..+..+++|++|++++|.++.+ |..+..+++|++|++++|.. ..++
T Consensus 136 l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~ 214 (353)
T 2z80_A 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLL 214 (353)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHH
T ss_pred CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccch
Confidence 999987 7889999999999998767766 45788999999999999999965 77899999999999999884 4454
Q ss_pred cC-CCCCCCCCEEEecCCCCCCcch----hhCCCCCCceeEeccCCcc-----ccchHHhhcCCcccccccccccccccC
Q 011891 154 LP-FDGLYSLTYLYLTDCAITELPE----SLGLLSSLEELYLERNNFE-----RIPESIIRLSKLSSLLVSYCERLQSLP 223 (475)
Q Consensus 154 ~~-~~~l~~L~~L~L~~~~l~~lp~----~l~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~l~~c~~l~~lp 223 (475)
.. +..+++|+.|++++|.+++++. .....+.++.++++++.+. .+|..+..+++|+.|++++| .++.+|
T Consensus 215 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~ 293 (353)
T 2z80_A 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVP 293 (353)
T ss_dssp HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCC
T ss_pred hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccC
Confidence 33 2458899999999999988432 1234667888888887764 57888899999999999998 455776
Q ss_pred CC----ccCcceecccccc
Q 011891 224 KL----PCNLYWLDAQHCT 238 (475)
Q Consensus 224 ~l----~~~L~~L~i~~c~ 238 (475)
.- .++|+.|++++++
T Consensus 294 ~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 294 DGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HHHHhcCCCCCEEEeeCCC
Confidence 42 3567777777764
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1.1e-21 Score=209.28 Aligned_cols=229 Identities=16% Similarity=0.175 Sum_probs=194.7
Q ss_pred CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC---cC-cCCCCCCcEEEccccC
Q 011891 2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL---PE-ISSAGNIEKILLDGTA 77 (475)
Q Consensus 2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~---p~-i~~l~~L~~L~L~~~~ 77 (475)
.+++++.+| .+ .+++|+.|++++|..+...+ +..+++|++|++++|. +..+ |. +..+++|++|++++|.
T Consensus 315 ~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~ 387 (606)
T 3vq2_A 315 IRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFK----KVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG 387 (606)
T ss_dssp ESCCCSSCC-CC-CCSSCCEEEEESCSSCEECC----CCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred ccccCcccc-cC-CCCccceeeccCCcCccchh----hccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc
Confidence 467778888 45 99999999999997766553 5688999999999964 4443 44 6789999999999999
Q ss_pred CcccCcccCCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeCcCCcc-CCcccCCCCCcCEEEcCCCCCCC-cccc
Q 011891 78 IEELPSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEE-LPSPIECLSALCVLDLGDCKSLK-SLKL 154 (475)
Q Consensus 78 i~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~L~~c~~l~-~l~~ 154 (475)
+..+|..+..+++|++|++++|......| ..+..+++|++|++++|.+.. .|..+..+++|+.|++++|.... .+|.
T Consensus 388 l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 467 (606)
T 3vq2_A 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467 (606)
T ss_dssp EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH
Confidence 99999999999999999999987666666 578899999999999999985 56778999999999999998655 3677
Q ss_pred CCCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCcccc-chHHhhcCCcccccccccccccccCC----CccC
Q 011891 155 PFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK----LPCN 228 (475)
Q Consensus 155 ~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~----l~~~ 228 (475)
.+..+++|+.|++++|.++++ |..+..+++|+.|++++|+++.+ |..+..+++|+.|++++|+ ++.+|. +|.+
T Consensus 468 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~ 546 (606)
T 3vq2_A 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKS 546 (606)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTT
T ss_pred hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhccc
Confidence 789999999999999999984 67789999999999999999866 7889999999999999995 667765 3456
Q ss_pred cceecccccc
Q 011891 229 LYWLDAQHCT 238 (475)
Q Consensus 229 L~~L~i~~c~ 238 (475)
|+.|++++++
T Consensus 547 L~~l~l~~N~ 556 (606)
T 3vq2_A 547 LAFFNLTNNS 556 (606)
T ss_dssp CCEEECCSCC
T ss_pred CcEEEccCCC
Confidence 8888887764
No 33
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=5.7e-21 Score=203.69 Aligned_cols=232 Identities=21% Similarity=0.247 Sum_probs=138.9
Q ss_pred CCCCccccccc-ccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC-cC-cCCCCCCcEEEccccCC
Q 011891 2 PHSNIEQLSES-VQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAI 78 (475)
Q Consensus 2 ~~s~l~~L~~~-~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~-p~-i~~l~~L~~L~L~~~~i 78 (475)
+++++..++.. ++.+++|++|++++| .++.+|. .+.++++|++|++++|. +..+ |. +..+++|++|++++|.+
T Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~--~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 262 QKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPS--GLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp TTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCS--SCCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred ecCccCccCHHHhccccCCCEEeccCC-ccCCCCh--hhcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCc
Confidence 45666666543 667777777777775 4556654 45667777777777753 3333 32 55667777777777665
Q ss_pred c-ccCc-ccCCCCCCcEEeeeCCCCCCcc--ccccCCCCCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCCCCCCccc
Q 011891 79 E-ELPS-SIGCLSRLLELNLGDCKNLKTL--PSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLK 153 (475)
Q Consensus 79 ~-~lp~-~i~~l~~L~~L~L~~c~~l~~l--p~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~l~ 153 (475)
. .++. .+..+++|++|++++|...... |..+..+++|++|++++|.+..+ |..+..+++|+.|++++|......+
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence 5 4444 3666677777777765443322 45566667777777777666643 4456666677777776665433333
Q ss_pred c-CCCCCCCCCEEEecCCCCCC-cchhhCCCCCCceeEeccCCccc--c--chHHhhcCCcccccccccccccccCCC--
Q 011891 154 L-PFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFER--I--PESIIRLSKLSSLLVSYCERLQSLPKL-- 225 (475)
Q Consensus 154 ~-~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~--l--p~~i~~l~~L~~L~l~~c~~l~~lp~l-- 225 (475)
. .+..+++|+.|++++|.++. .|..++.+++|+.|++++|+++. + +..+..+++|+.|++++|......|..
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 497 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTT
T ss_pred chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhc
Confidence 2 24566667777777666665 34556666667777776666643 1 234666666666666666433322321
Q ss_pred -ccCcceeccccc
Q 011891 226 -PCNLYWLDAQHC 237 (475)
Q Consensus 226 -~~~L~~L~i~~c 237 (475)
.++|+.|+++++
T Consensus 498 ~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 498 SLKMMNHVDLSHN 510 (606)
T ss_dssp TCTTCCEEECCSS
T ss_pred cccCCCEEECCCC
Confidence 245666666665
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=2.1e-20 Score=192.38 Aligned_cols=219 Identities=28% Similarity=0.418 Sum_probs=178.5
Q ss_pred CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC-cC-cCCCCCCcEEEccccCCcccC-cccCCCCCCcEE
Q 011891 18 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAIEELP-SSIGCLSRLLEL 94 (475)
Q Consensus 18 ~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~-p~-i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L 94 (475)
..+.++.++ ..++.+|. .+ .++|++|+|++| .+..+ |. +..+++|++|+|++|.++.++ ..+..+++|++|
T Consensus 55 ~~~~v~c~~-~~l~~iP~--~~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 55 QFSKVVCTR-RGLSEVPQ--GI--PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128 (452)
T ss_dssp SSCEEECCS-SCCSSCCS--CC--CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcEEEECC-CCcCccCC--CC--CCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence 356777776 56788885 22 268999999996 45555 44 889999999999999999776 578899999999
Q ss_pred eeeCCCCCCccc-cccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCcccc-CCCCCCCCCEEEecCCC
Q 011891 95 NLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCA 171 (475)
Q Consensus 95 ~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~-~~~~l~~L~~L~L~~~~ 171 (475)
+|++|. +..+| ..+..+++|++|++++|.++.+|. .+..+++|+.|++++|..+..++. .+.++++|+.|+|++|+
T Consensus 129 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 129 ELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp ECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 999976 45555 458889999999999999998876 688899999999999988888876 46889999999999999
Q ss_pred CCCcchhhCCCCCCceeEeccCCcccc-chHHhhcCCcccccccccccccccCC---CccCcceecccccccCccccC
Q 011891 172 ITELPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK---LPCNLYWLDAQHCTTLESLSG 245 (475)
Q Consensus 172 l~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~---l~~~L~~L~i~~c~~L~~l~~ 245 (475)
++++| .+..+++|+.|+|++|.++.+ |..+..+++|+.|++++|......+. -.++|+.|+++++ .++.++.
T Consensus 208 l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 283 (452)
T 3zyi_A 208 IKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPH 283 (452)
T ss_dssp CSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred ccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccCh
Confidence 99987 478899999999999999866 67889999999999999864333332 2368999999887 5666654
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.9e-20 Score=184.76 Aligned_cols=229 Identities=21% Similarity=0.335 Sum_probs=146.8
Q ss_pred CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCccc-CcccCCCCCCcEE
Q 011891 18 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLEL 94 (475)
Q Consensus 18 ~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L 94 (475)
+|+.++++++ .++.+|. .+ .++|+.|++++|. +..++. +..+++|++|++++|.++.+ |..++++++|++|
T Consensus 34 ~l~~l~~~~~-~l~~ip~--~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPK--EI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSS-CCSSCCS--CC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCC-CccccCC--CC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 5777777774 4566664 12 2567777777753 444432 66777777777777777765 5567777777777
Q ss_pred eeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCCCCC--ccccCCCCCCCCCEEEecCCC
Q 011891 95 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLK--SLKLPFDGLYSLTYLYLTDCA 171 (475)
Q Consensus 95 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~--~l~~~~~~l~~L~~L~L~~~~ 171 (475)
++++|. ++.+|..+. ++|++|++++|.++.+|.. +..+++|+.|++++|.... ..+..+..+ +|+.|++++|.
T Consensus 108 ~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 108 YISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp ECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred ECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 777753 456666554 6777777777777776653 6777777777777776421 334444555 77777777777
Q ss_pred CCCcchhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccccccccCC----CccCcceecccccccCccccCC
Q 011891 172 ITELPESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPK----LPCNLYWLDAQHCTTLESLSGL 246 (475)
Q Consensus 172 l~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~----l~~~L~~L~i~~c~~L~~l~~~ 246 (475)
++++|..+. ++|+.|++++|.++.++ ..+..+++|+.|++++|. ++.++. -.++|+.|+++++ .++.++..
T Consensus 184 l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~ 259 (332)
T 2ft3_A 184 LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNN-KLSRVPAG 259 (332)
T ss_dssp CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCC-cCeecChh
Confidence 777766543 67777777777777655 566777777777777764 333332 1356777777765 45555543
Q ss_pred CCC-cceeEEEecCC
Q 011891 247 FSS-YKCVFFYLNEN 260 (475)
Q Consensus 247 ~~~-~~~~~l~~~~c 260 (475)
... .....+.+.++
T Consensus 260 l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTN 274 (332)
T ss_dssp GGGCTTCCEEECCSS
T ss_pred hhcCccCCEEECCCC
Confidence 222 12344555443
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=2.5e-20 Score=191.17 Aligned_cols=218 Identities=28% Similarity=0.426 Sum_probs=171.6
Q ss_pred CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCcccC-cccCCCCCCcEE
Q 011891 18 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELP-SSIGCLSRLLEL 94 (475)
Q Consensus 18 ~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L 94 (475)
..+.++.++ ..++.+|. .+ .++++.|+|++| .+..++. +..+++|++|+|++|.++.++ ..+.++++|++|
T Consensus 44 ~~~~v~c~~-~~l~~iP~--~~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 44 QFSKVICVR-KNLREVPD--GI--STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL 117 (440)
T ss_dssp TSCEEECCS-CCCSSCCS--CC--CTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred CCCEEEeCC-CCcCcCCC--CC--CCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence 356777776 57788885 22 267899999985 4555543 788999999999999998776 468889999999
Q ss_pred eeeCCCCCCcccc-ccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCcccc-CCCCCCCCCEEEecCCC
Q 011891 95 NLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCA 171 (475)
Q Consensus 95 ~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~-~~~~l~~L~~L~L~~~~ 171 (475)
+|++|. ++.+|. .+..+++|++|++++|.++.++. .+..+++|+.|++++|..+..++. .+.++++|+.|++++|+
T Consensus 118 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 118 ELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp ECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred ECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 999974 555554 58889999999999999987766 678899999999999888877765 46788999999999999
Q ss_pred CCCcchhhCCCCCCceeEeccCCcccc-chHHhhcCCcccccccccccccccC-C---CccCcceecccccccCccccC
Q 011891 172 ITELPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLP-K---LPCNLYWLDAQHCTTLESLSG 245 (475)
Q Consensus 172 l~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c~~l~~lp-~---l~~~L~~L~i~~c~~L~~l~~ 245 (475)
++++|. +..+++|+.|+|++|+++.+ |..+..+++|+.|++++|. ++.++ . -.++|+.|+++++ .++.++.
T Consensus 197 l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 272 (440)
T 3zyj_A 197 LREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLPH 272 (440)
T ss_dssp CSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCCT
T ss_pred Cccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccCh
Confidence 998874 78889999999999999866 5778889999999999885 33333 2 2467888998886 4665554
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=4.3e-20 Score=196.92 Aligned_cols=215 Identities=22% Similarity=0.238 Sum_probs=122.0
Q ss_pred CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCc
Q 011891 2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIE 79 (475)
Q Consensus 2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~ 79 (475)
++++++.+|.++..+++|++|++++|.. +.++. ..+.++++|++|++++|.....+|. +..+++|++|++++|.+.
T Consensus 286 ~~n~l~~lp~~l~~l~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 286 TATHLSELPSGLVGLSTLKKLVLSANKF-ENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363 (606)
T ss_dssp TTSCCSCCCSSCCSCTTCCEEECTTCCC-SBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred cCCccCCCChhhcccccCCEEECccCCc-CcCch-hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc
Confidence 4555666666666666666666666532 22211 2345566666666666554444443 456666666666666665
Q ss_pred cc---CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccC-C-cccCCCCCcCEEEcCCCCCCCcccc
Q 011891 80 EL---PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-P-SPIECLSALCVLDLGDCKSLKSLKL 154 (475)
Q Consensus 80 ~l---p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p-~~i~~l~~L~~L~L~~c~~l~~l~~ 154 (475)
.+ +..+..+++|++|++++|......|..+..+++|++|++++|.++.. + ..+..+++|+.|++++|......+.
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH
Confidence 43 44555666666666666554444455556666666666666665533 2 2255666666666666654444444
Q ss_pred CCCCCCCCCEEEecCCCCCC--c--chhhCCCCCCceeEeccCCcccc-chHHhhcCCccccccccccc
Q 011891 155 PFDGLYSLTYLYLTDCAITE--L--PESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCER 218 (475)
Q Consensus 155 ~~~~l~~L~~L~L~~~~l~~--l--p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c~~ 218 (475)
.+.++++|+.|++++|.+++ + +..+..+++|+.|++++|+++.+ |..+..+++|+.|++++|+.
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 45556666666666666654 1 23455566666666666666544 34556666666666666643
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=196.55 Aligned_cols=119 Identities=15% Similarity=0.135 Sum_probs=100.9
Q ss_pred CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC-cC-cCCCCCCcEEEccccCC
Q 011891 1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAI 78 (475)
Q Consensus 1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~-p~-i~~l~~L~~L~L~~~~i 78 (475)
+++++++.+|..+. ++|++|+|++|. ++.++. ..+.++++|++|+|++|. +..+ |. ++.+++|++|+|++|.+
T Consensus 7 ls~n~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 7 RSKNGLIHVPKDLS--QKTTILNISQNY-ISELWT-SDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CTTSCCSSCCCSCC--TTCSEEECCSSC-CCCCCH-HHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred cCCCCccccccccc--ccccEEECCCCc-ccccCh-hhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCce
Confidence 57889999998776 899999999975 555542 467899999999999975 5555 54 88999999999999999
Q ss_pred cccCcccCCCCCCcEEeeeCCCCCC-ccccccCCCCCCcEEEeeCcCCc
Q 011891 79 EELPSSIGCLSRLLELNLGDCKNLK-TLPSSLCKLKSLEEICLTGSAIE 126 (475)
Q Consensus 79 ~~lp~~i~~l~~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~l~~~~i~ 126 (475)
+.+|.. .+++|++|++++|.... .+|..++++++|++|++++|.++
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 999887 89999999999987655 57888999999999999888764
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=9.5e-21 Score=194.80 Aligned_cols=125 Identities=23% Similarity=0.210 Sum_probs=103.0
Q ss_pred CCCcEEEeeCcCCcc-CCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEe
Q 011891 113 KSLEEICLTGSAIEE-LPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYL 190 (475)
Q Consensus 113 ~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L 190 (475)
++|++|++++|.+.. .|..+..+++|+.|++++|......+..+.++++|+.|++++|.++++ |..+..+++|+.|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 456777777777764 466789999999999999987666677888999999999999999985 678899999999999
Q ss_pred ccCCcccc-chHHhhcCCcccccccccccccccCC----CccCcceecccccc
Q 011891 191 ERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK----LPCNLYWLDAQHCT 238 (475)
Q Consensus 191 ~~n~l~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~----l~~~L~~L~i~~c~ 238 (475)
++|+++.+ |..+..+++|++|++++|+ ++.+|. -.++|+.|++++++
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence 99999866 6789999999999999984 555654 23577888887754
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=4.1e-20 Score=195.54 Aligned_cols=94 Identities=16% Similarity=0.253 Sum_probs=45.4
Q ss_pred CCCCccccc-ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891 2 PHSNIEQLS-ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE 80 (475)
Q Consensus 2 ~~s~l~~L~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~ 80 (475)
++|+|..++ ..+..+++|++|+|++|. ++.++. ..+.++++|++|+|++| .+..+|.. .+++|++|++++|.++.
T Consensus 60 s~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l~~L~~L~Ls~N~l~~ 135 (562)
T 3a79_B 60 SQNSISELRMPDISFLSELRVLRLSHNR-IRSLDF-HVFLFNQDLEYLDVSHN-RLQNISCC-PMASLRHLDLSFNDFDV 135 (562)
T ss_dssp CSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECT-TTTTTCTTCCEEECTTS-CCCEECSC-CCTTCSEEECCSSCCSB
T ss_pred CCCCccccChhhhccCCCccEEECCCCC-CCcCCH-HHhCCCCCCCEEECCCC-cCCccCcc-ccccCCEEECCCCCccc
Confidence 344454444 345555555555555542 222211 23445555555555553 24444444 45555555555555554
Q ss_pred cC--cccCCCCCCcEEeeeCC
Q 011891 81 LP--SSIGCLSRLLELNLGDC 99 (475)
Q Consensus 81 lp--~~i~~l~~L~~L~L~~c 99 (475)
++ ..++++++|++|++++|
T Consensus 136 l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 136 LPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp CCCCGGGGGCTTCCEEEEECS
T ss_pred cCchHhhcccCcccEEecCCC
Confidence 32 44555555555555554
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=7.1e-20 Score=189.22 Aligned_cols=203 Identities=22% Similarity=0.360 Sum_probs=117.8
Q ss_pred CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891 1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE 80 (475)
Q Consensus 1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~ 80 (475)
|++++++.++. +..+++|++|++++|. ++.++. +.++++|++|++++| .+..++.+..+++|++|++++|.+..
T Consensus 75 Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~ 148 (466)
T 1o6v_A 75 FSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP---LANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNTISD 148 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEEEEEEEECC
T ss_pred CCCCccCCchh-hhccccCCEEECCCCc-cccChh---hcCCCCCCEEECCCC-CCCCChHHcCCCCCCEEECCCCccCC
Confidence 45666777765 7777777777777753 344332 566677777777764 45555556666666666666665544
Q ss_pred cCc--------------------ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCE
Q 011891 81 LPS--------------------SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCV 140 (475)
Q Consensus 81 lp~--------------------~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 140 (475)
++. .+.++++|++|++++|. +..++ .+..+++|++|++++|.+..+++ +..+++|+.
T Consensus 149 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 225 (466)
T 1o6v_A 149 ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDE 225 (466)
T ss_dssp CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCE
T ss_pred ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCE
Confidence 321 24566777777777764 44443 35666777777777776665544 455666666
Q ss_pred EEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCccccccccc
Q 011891 141 LDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC 216 (475)
Q Consensus 141 L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c 216 (475)
|++++|.. ..++ .+..+++|+.|++++|.+++++. +..+++|+.|++++|.++.++. +..+++|+.|++++|
T Consensus 226 L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 226 LSLNGNQL-KDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN 297 (466)
T ss_dssp EECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS
T ss_pred EECCCCCc-ccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC
Confidence 66666542 2222 23445555555555555555433 4455555555555555554443 444555555555554
No 42
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=2.3e-21 Score=189.75 Aligned_cols=173 Identities=18% Similarity=0.188 Sum_probs=76.7
Q ss_pred CCCCcEEEEeCCCCCCCCcC-c--CCCCCCcEEEccccCCcccCcccCCC-----CCCcEEeeeCCCCCCccccccCCCC
Q 011891 42 LNKLVILNLSGCSKLKSLPE-I--SSAGNIEKILLDGTAIEELPSSIGCL-----SRLLELNLGDCKNLKTLPSSLCKLK 113 (475)
Q Consensus 42 l~~L~~L~L~~c~~l~~~p~-i--~~l~~L~~L~L~~~~i~~lp~~i~~l-----~~L~~L~L~~c~~l~~lp~~l~~l~ 113 (475)
+++|++|+|++|...+.+|. + ..+++|++|++++|.++.+|..++.+ ++|++|++++|......|..++.++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 44555555555433333443 2 44555555555555554444444333 4555555555443333334444555
Q ss_pred CCcEEEeeCcCCcc---CCccc--CCCCCcCEEEcCCCCCCC--cccc-CCCCCCCCCEEEecCCCCCCcc--hhhCCCC
Q 011891 114 SLEEICLTGSAIEE---LPSPI--ECLSALCVLDLGDCKSLK--SLKL-PFDGLYSLTYLYLTDCAITELP--ESLGLLS 183 (475)
Q Consensus 114 ~L~~L~l~~~~i~~---lp~~i--~~l~~L~~L~L~~c~~l~--~l~~-~~~~l~~L~~L~L~~~~l~~lp--~~l~~l~ 183 (475)
+|++|++++|.+.. +|..+ ..+++|++|++++|.... .++. .+.++++|+.|++++|.+++.+ ..+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 55555555554331 12222 444555555555544211 1111 1123444555555555554422 2233344
Q ss_pred CCceeEeccCCccccchHHhhcCCccccccccc
Q 011891 184 SLEELYLERNNFERIPESIIRLSKLSSLLVSYC 216 (475)
Q Consensus 184 ~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c 216 (475)
+|+.|++++|+++.+|..+. ++|+.|++++|
T Consensus 254 ~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 254 QLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYN 284 (312)
T ss_dssp TCCEEECTTSCCSSCCSSCC--SEEEEEECCSS
T ss_pred CCCEEECCCCccChhhhhcc--CCceEEECCCC
Confidence 55555555555554444333 45555555544
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=5.6e-20 Score=189.99 Aligned_cols=223 Identities=18% Similarity=0.281 Sum_probs=180.9
Q ss_pred CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891 1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE 80 (475)
Q Consensus 1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~ 80 (475)
+.++.++.++ ++..+++|++|+|++| .++.++. +.++++|++|++++| .+..++.++.+++|++|++++|.++.
T Consensus 53 l~~~~i~~l~-~~~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~ 126 (466)
T 1o6v_A 53 ADRLGIKSID-GVEYLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNNQITD 126 (466)
T ss_dssp CCSSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred cCCCCCccCc-chhhhcCCCEEECCCC-ccCCchh---hhccccCCEEECCCC-ccccChhhcCCCCCCEEECCCCCCCC
Confidence 3567777776 5889999999999997 4666653 788999999999996 56667779999999999999999998
Q ss_pred cCcccCCCCCCcEEeeeCCCCCCcccc--------------------ccCCCCCCcEEEeeCcCCccCCcccCCCCCcCE
Q 011891 81 LPSSIGCLSRLLELNLGDCKNLKTLPS--------------------SLCKLKSLEEICLTGSAIEELPSPIECLSALCV 140 (475)
Q Consensus 81 lp~~i~~l~~L~~L~L~~c~~l~~lp~--------------------~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 140 (475)
++. +.++++|++|++++|. +..++. .+.++++|++|++++|.++.++ .+..+++|+.
T Consensus 127 ~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~ 203 (466)
T 1o6v_A 127 IDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLES 203 (466)
T ss_dssp CGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSE
T ss_pred ChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCE
Confidence 876 8899999999999875 333321 2567788999999999988775 4788999999
Q ss_pred EEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCccccccccccccc
Q 011891 141 LDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQ 220 (475)
Q Consensus 141 L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~ 220 (475)
|++++|......+ ++.+++|+.|++++|.+++++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|. +.
T Consensus 204 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~ 278 (466)
T 1o6v_A 204 LIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ-IS 278 (466)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CC
T ss_pred EEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCc-cC
Confidence 9999998554433 567899999999999999885 57889999999999999988875 8899999999999984 33
Q ss_pred ccCCC--ccCcceeccccc
Q 011891 221 SLPKL--PCNLYWLDAQHC 237 (475)
Q Consensus 221 ~lp~l--~~~L~~L~i~~c 237 (475)
.++.+ .++|+.|++++|
T Consensus 279 ~~~~~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 279 NISPLAGLTALTNLELNEN 297 (466)
T ss_dssp CCGGGTTCTTCSEEECCSS
T ss_pred ccccccCCCccCeEEcCCC
Confidence 44332 356777777765
No 44
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=1.8e-19 Score=191.74 Aligned_cols=231 Identities=26% Similarity=0.331 Sum_probs=162.0
Q ss_pred CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891 1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE 80 (475)
Q Consensus 1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~ 80 (475)
+++++|+.+|..+. ++|+.|+|++| .++.+|. .+++|++|+|++| .++.+|. .+++|++|++++|.++.
T Consensus 47 ls~n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 47 VGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV--LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CCSSCCSCCCSCCC--TTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSC-CCSCCCC--CCTTCCEEEECSCCCCC
T ss_pred ecCCCcCccChhhC--CCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCC-cCCcCCC--CCCCCCEEECcCCcCCC
Confidence 46788888887665 78999999886 4667764 4678888999886 4677776 67888888888888888
Q ss_pred cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccC-----------------CCCCcCEEEc
Q 011891 81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIE-----------------CLSALCVLDL 143 (475)
Q Consensus 81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~-----------------~l~~L~~L~L 143 (475)
+|. .+++|++|++++|. ++.+|.. +++|++|++++|.++.+|..+. .+++|+.|++
T Consensus 116 l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~L 188 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSV 188 (622)
T ss_dssp CCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred CCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEEC
Confidence 776 56777788877753 5556653 3667777777777766654322 1255666666
Q ss_pred CCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccC
Q 011891 144 GDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLP 223 (475)
Q Consensus 144 ~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp 223 (475)
++|. +..+|. .+++|+.|++++|.++.+|. .+++|+.|++++|+++.+| ..+++|+.|++++| .++.+|
T Consensus 189 s~N~-l~~l~~---~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp 257 (622)
T 3g06_A 189 SDNQ-LASLPT---LPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLP 257 (622)
T ss_dssp CSSC-CSCCCC---CCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCC
T ss_pred CCCC-CCCCCC---ccchhhEEECcCCcccccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCC
Confidence 6654 333332 23566777777777776664 3478889999999888888 45688999999988 677888
Q ss_pred CCccCcceecccccccCccccCCCCC-cceeEEEecCCc
Q 011891 224 KLPCNLYWLDAQHCTTLESLSGLFSS-YKCVFFYLNENF 261 (475)
Q Consensus 224 ~l~~~L~~L~i~~c~~L~~l~~~~~~-~~~~~l~~~~c~ 261 (475)
..+++|+.|++++| .++.++..... .....+.+.++.
T Consensus 258 ~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 258 MLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred cccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 88889999999887 56666653222 224556666664
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=1.8e-19 Score=185.67 Aligned_cols=187 Identities=21% Similarity=0.190 Sum_probs=145.4
Q ss_pred ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCC
Q 011891 11 ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSR 90 (475)
Q Consensus 11 ~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~ 90 (475)
..+..+++|++|++++| .++.+| .+..+++|++|++++| .+..+| ++.+++|++|++++|.++.++ ++++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n-~l~~~~---~l~~l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNS-SITDMT---GIEKLTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSS-CCCCCT---TGGGCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTT
T ss_pred cChhHcCCCCEEEccCC-CcccCh---hhcccCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCCCCceee--cCCCCc
Confidence 35678999999999996 566776 4788999999999996 567776 889999999999999999886 889999
Q ss_pred CcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCC
Q 011891 91 LLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC 170 (475)
Q Consensus 91 L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~ 170 (475)
|++|++++|. ++.+| ++.+++|++|++++|.++.++ +..+++|+.|++++|..+..+ .+..+++|+.|++++|
T Consensus 108 L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 108 LTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CCEEECCCCc-CCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 9999999974 55565 889999999999999999874 778888888888888766655 3456677777777777
Q ss_pred CCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCccccccccc
Q 011891 171 AITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC 216 (475)
Q Consensus 171 ~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c 216 (475)
+++++| ++.+++|+.|++++|+++.++ +..+++|+.|++++|
T Consensus 181 ~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 181 KITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSN 222 (457)
T ss_dssp CCCCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSS
T ss_pred ccceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCC
Confidence 777665 555566666666666655543 445555555555555
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=1.3e-20 Score=198.51 Aligned_cols=108 Identities=18% Similarity=0.250 Sum_probs=63.4
Q ss_pred CCCCCccccc-ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCC-CCcC-cCCCCCCcEEEccccC
Q 011891 1 MPHSNIEQLS-ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLK-SLPE-ISSAGNIEKILLDGTA 77 (475)
Q Consensus 1 l~~s~l~~L~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~-~~p~-i~~l~~L~~L~L~~~~ 77 (475)
|++|++..++ +.+..+++|++|+|++|. ++.++. ..++++++|++|++++|.... ..|. ++.+++|++|++++|.
T Consensus 57 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 57 LKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSS-SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCH-HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred CCCCCcCccChhhccccccCCEEECCCCc-cCccCH-HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence 3556666665 456777777777777753 444432 335667777777777753222 2233 5666777777777665
Q ss_pred -CcccC-cccCCCCCCcEEeeeCCCCCCccccccC
Q 011891 78 -IEELP-SSIGCLSRLLELNLGDCKNLKTLPSSLC 110 (475)
Q Consensus 78 -i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~l~ 110 (475)
+..+| ..+..+++|++|++++|......|..++
T Consensus 135 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred cccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 45554 3566666666666666554444444443
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=5e-20 Score=185.78 Aligned_cols=231 Identities=17% Similarity=0.223 Sum_probs=181.4
Q ss_pred CCCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC
Q 011891 1 MPHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA 77 (475)
Q Consensus 1 l~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~ 77 (475)
|++++++.++. .+..+++|++|+|++|. ++.++. ..+.++++|++|++++| .+..+|. +..+++|++|++++|.
T Consensus 76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~ 152 (390)
T 3o6n_A 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPP-HVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN 152 (390)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcccccChhhccCCCCcCEEECCCCC-CCcCCH-HHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc
Confidence 46778888874 78899999999999875 555543 45788899999999995 5677776 5789999999999999
Q ss_pred CcccCc-ccCCCCCCcEEeeeCCCCCCccc-cccC-------------------------------------CCCCCcEE
Q 011891 78 IEELPS-SIGCLSRLLELNLGDCKNLKTLP-SSLC-------------------------------------KLKSLEEI 118 (475)
Q Consensus 78 i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp-~~l~-------------------------------------~l~~L~~L 118 (475)
+..++. .+..+++|++|++++|... .++ ..+. ..++|+.|
T Consensus 153 l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L 231 (390)
T 3o6n_A 153 LERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL 231 (390)
T ss_dssp CCBCCTTTTSSCTTCCEEECCSSCCS-BCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEE
T ss_pred cCccChhhccCCCCCCEEECCCCcCC-ccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEE
Confidence 987754 5888999999999987532 221 1111 11345556
Q ss_pred EeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcccc
Q 011891 119 CLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERI 198 (475)
Q Consensus 119 ~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~l 198 (475)
++++|.++.. ..+..+++|++|++++|......|..+.++++|+.|++++|+++++|..+..+++|+.|++++|+++.+
T Consensus 232 ~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~ 310 (390)
T 3o6n_A 232 KLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV 310 (390)
T ss_dssp ECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCC
T ss_pred ECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceec
Confidence 6666666554 457789999999999998666667788899999999999999999988888999999999999999999
Q ss_pred chHHhhcCCcccccccccccccccC-CCccCcceeccccc
Q 011891 199 PESIIRLSKLSSLLVSYCERLQSLP-KLPCNLYWLDAQHC 237 (475)
Q Consensus 199 p~~i~~l~~L~~L~l~~c~~l~~lp-~l~~~L~~L~i~~c 237 (475)
|..+..+++|+.|++++|+ ++.++ ...++|+.|+++++
T Consensus 311 ~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 311 ERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp GGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSS
T ss_pred CccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCCC
Confidence 9999999999999999985 44444 23466777777664
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=3.9e-20 Score=194.77 Aligned_cols=131 Identities=17% Similarity=0.302 Sum_probs=100.6
Q ss_pred CCCCCccccc-ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC
Q 011891 1 MPHSNIEQLS-ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA 77 (475)
Q Consensus 1 l~~s~l~~L~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~ 77 (475)
|++|+++.++ ..+..+++|++|+|++|. ++.++. ..+.++++|++|+|++|. +..++. ++.+++|++|++++|.
T Consensus 33 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 33 LSFNKITYIGHGDLRACANLQVLILKSSR-INTIEG-DAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp CCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCC
T ss_pred CcCCccCccChhhhhcCCcccEEECCCCC-cCccCh-hhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCc
Confidence 4567777774 568888899999998874 444432 357788899999999864 455543 8889999999999998
Q ss_pred Ccc--cCcccCCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeCcCCcc-CCcccCC
Q 011891 78 IEE--LPSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEE-LPSPIEC 134 (475)
Q Consensus 78 i~~--lp~~i~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~-lp~~i~~ 134 (475)
++. +|..++++++|++|++++|..++.+| ..+.++++|++|++++|.++. .|..+..
T Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 884 46778899999999999988777776 468889999999999988874 4555443
No 49
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=4e-20 Score=180.67 Aligned_cols=192 Identities=20% Similarity=0.308 Sum_probs=154.0
Q ss_pred ccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCc
Q 011891 13 VQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLL 92 (475)
Q Consensus 13 ~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 92 (475)
...+++|+.|++++| .++.++ .+..+++|++|++++| .+..++.+..+++|++|++++|.++.++ .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l~---~~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTTIE---GVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCCCT---TGGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCC-CccCch---hhhccCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence 446788999999886 455555 3677888999999885 5677777888889999999999888875 578888999
Q ss_pred EEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCC
Q 011891 93 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAI 172 (475)
Q Consensus 93 ~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l 172 (475)
+|++++|. +..++. +..+++|++|++++|.++.++. +..+++|+.|++++|. +..++. +..+++|+.|++++|.+
T Consensus 111 ~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 111 TLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEECCCCC-CCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCCcc
Confidence 99998865 555664 7888899999999988887766 7788889999998886 444544 67888899999999988
Q ss_pred CCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccc
Q 011891 173 TELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 173 ~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~ 217 (475)
++++. +..+++|+.|++++|+++.++ .+..+++|+.|++++|+
T Consensus 186 ~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 186 SDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred CcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe
Confidence 88765 778888999999999888777 37888888888888874
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=2.6e-20 Score=178.78 Aligned_cols=209 Identities=19% Similarity=0.251 Sum_probs=150.9
Q ss_pred CCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCccc
Q 011891 4 SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL 81 (475)
Q Consensus 4 s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~l 81 (475)
.++..+|.++. ++|++|++++|. ++.++. ..+.++++|++|++++| .+..++. +..+++|++|++++|.++.+
T Consensus 17 ~~l~~ip~~l~--~~l~~L~ls~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 17 LNFYKIPDNLP--FSTKNLDLSFNP-LRHLGS-YSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp SCCSSCCSSSC--TTCCEEECTTCC-CCEECT-TTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCccccCCCCC--CCccEEECCCCc-ccccCH-hHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 45666666553 578888888864 455543 34677888888888886 4555554 67888888888888888866
Q ss_pred C-cccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCcc--CCcccCCCCCcCEEEcCCCCCCCccccCCCC
Q 011891 82 P-SSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE--LPSPIECLSALCVLDLGDCKSLKSLKLPFDG 158 (475)
Q Consensus 82 p-~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~ 158 (475)
+ ..+..+++|++|++++|......+..++.+++|++|++++|.++. +|..+..+++|++|++++|......+..+..
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 5 467788888888888865444334467788888888888888875 6778888888888888888744433334444
Q ss_pred CCCCC----EEEecCCCCCCcchhhCCCCCCceeEeccCCccccchH-HhhcCCcccccccccc
Q 011891 159 LYSLT----YLYLTDCAITELPESLGLLSSLEELYLERNNFERIPES-IIRLSKLSSLLVSYCE 217 (475)
Q Consensus 159 l~~L~----~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~l~~c~ 217 (475)
+.+|+ .|++++|.++.++.......+|+.|++++|+++.+|.. +..+++|+.|++++|+
T Consensus 172 l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 44455 78888888888766666666888888888888877754 4778888888888774
No 51
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=9.2e-20 Score=176.53 Aligned_cols=197 Identities=22% Similarity=0.224 Sum_probs=149.7
Q ss_pred ccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCc-C-cCCCCCCcEEEccccCCcccCcccCCCCC
Q 011891 13 VQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTAIEELPSSIGCLSR 90 (475)
Q Consensus 13 ~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p-~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~ 90 (475)
+..+++|+.+++++ ..++.+|. .+ .+.|+.|+|++|. +..++ . +..+++|++|++++|.++.++.. +.+++
T Consensus 6 ~~~l~~l~~l~~~~-~~l~~ip~--~~--~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDK-RNLTALPP--DL--PKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPV 78 (290)
T ss_dssp EECSTTCCEEECTT-SCCSSCCS--CC--CTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTT
T ss_pred ccccCCccEEECCC-CCCCcCCC--CC--CCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCc
Confidence 56778888888887 46777774 22 2678888888854 55543 3 77888888888888888877664 67888
Q ss_pred CcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecC
Q 011891 91 LLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTD 169 (475)
Q Consensus 91 L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~ 169 (475)
|++|++++| .+..+|..+..+++|++|++++|.++.+|. .+..+++|+.|++++|......+..+..+++|+.|+|++
T Consensus 79 L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 888888885 456788778888888888888888887764 577888888888888864433333456788888888888
Q ss_pred CCCCCcchh-hCCCCCCceeEeccCCccccchHHhhcCCcccccccccc
Q 011891 170 CAITELPES-LGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 170 ~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~ 217 (475)
|+++.+|.. +..+++|+.|++++|+++.+|..+..+.+|+.|++++|+
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 888887654 467888888888888888888777777777777777763
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=2.3e-20 Score=192.12 Aligned_cols=224 Identities=23% Similarity=0.321 Sum_probs=126.5
Q ss_pred CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCC-------------CcEEEEeCCCCCCCCcCcC-----
Q 011891 2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNK-------------LVILNLSGCSKLKSLPEIS----- 63 (475)
Q Consensus 2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~-------------L~~L~L~~c~~l~~~p~i~----- 63 (475)
+++++..+|++++++++|++|++++|.....+|. .++++++ |++|++++| .+..+|.+.
T Consensus 19 ~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~--~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~~~~~L~~ 95 (454)
T 1jl5_A 19 HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPP--GNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPELPPHLES 95 (454)
T ss_dssp ---------------CCHHHHHHHHHHHHHTSCT--TSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCSCCTTCSE
T ss_pred ccCchhhCChhHhcccchhhhhccCCcccccCCc--ccccchhcchhhhhhhhccCCCEEEecCC-ccccCCCCcCCCCE
Confidence 4677777888888888888888877654445553 3344433 255555553 244444321
Q ss_pred -------------CCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc
Q 011891 64 -------------SAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS 130 (475)
Q Consensus 64 -------------~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~ 130 (475)
.+++|++|++++|.++.++.. .++|++|++++|. ++.+| .++++++|++|++++|.++.+|.
T Consensus 96 L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~N~l~~lp~ 170 (454)
T 1jl5_A 96 LVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNSLKKLPD 170 (454)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSCCCC
T ss_pred EEccCCcCCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCCCcCcccCC
Confidence 123444444444444443321 1466777776653 34466 46777777777777777776665
Q ss_pred ccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCccc
Q 011891 131 PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSS 210 (475)
Q Consensus 131 ~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~ 210 (475)
.+ .+|++|++++|. +..+| .++++++|+.|++++|.++++|.. .++|+.|++++|.++.+|. +..+++|+.
T Consensus 171 ~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~lp~-~~~l~~L~~ 241 (454)
T 1jl5_A 171 LP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELPE-LQNLPFLTT 241 (454)
T ss_dssp CC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSCCC-CTTCTTCCE
T ss_pred Cc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCcccc-cCCCCCCCE
Confidence 43 467777777765 33455 466777777777777777776543 2577777777777777773 677777888
Q ss_pred ccccccccccccCCCccCcceecccccccCcccc
Q 011891 211 LLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLS 244 (475)
Q Consensus 211 L~l~~c~~l~~lp~l~~~L~~L~i~~c~~L~~l~ 244 (475)
|++++| .++.+|..+++|+.|+++++. ++.++
T Consensus 242 L~l~~N-~l~~l~~~~~~L~~L~l~~N~-l~~l~ 273 (454)
T 1jl5_A 242 IYADNN-LLKTLPDLPPSLEALNVRDNY-LTDLP 273 (454)
T ss_dssp EECCSS-CCSSCCSCCTTCCEEECCSSC-CSCCC
T ss_pred EECCCC-cCCcccccccccCEEECCCCc-ccccC
Confidence 888776 455677667777777777653 44443
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=1.2e-21 Score=191.93 Aligned_cols=177 Identities=22% Similarity=0.263 Sum_probs=94.1
Q ss_pred CCCCCcEEEccccCCc-ccCccc--CCCCCCcEEeeeCCCCCCccccccCCC-----CCCcEEEeeCcCCccCC-cccCC
Q 011891 64 SAGNIEKILLDGTAIE-ELPSSI--GCLSRLLELNLGDCKNLKTLPSSLCKL-----KSLEEICLTGSAIEELP-SPIEC 134 (475)
Q Consensus 64 ~l~~L~~L~L~~~~i~-~lp~~i--~~l~~L~~L~L~~c~~l~~lp~~l~~l-----~~L~~L~l~~~~i~~lp-~~i~~ 134 (475)
.+++|++|++++|.++ .+|..+ ..+++|++|++++|.. ..+|..++.+ ++|++|++++|.++.++ ..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC-SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC-cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 4566666666666665 455544 5566666666666443 2235444444 56666666666666554 45556
Q ss_pred CCCcCEEEcCCCCCCCcc--ccCC--CCCCCCCEEEecCCCCCCcc----hhhCCCCCCceeEeccCCccccc--hHHhh
Q 011891 135 LSALCVLDLGDCKSLKSL--KLPF--DGLYSLTYLYLTDCAITELP----ESLGLLSSLEELYLERNNFERIP--ESIIR 204 (475)
Q Consensus 135 l~~L~~L~L~~c~~l~~l--~~~~--~~l~~L~~L~L~~~~l~~lp----~~l~~l~~L~~L~L~~n~l~~lp--~~i~~ 204 (475)
+++|++|++++|...+.+ +..+ ..+++|+.|++++|.+++++ ..+..+++|+.|++++|+++..+ ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 666666666666543321 1112 45566666666666665422 12235566666666666665432 23344
Q ss_pred cCCcccccccccccccccCC-CccCcceecccccccCccc
Q 011891 205 LSKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCTTLESL 243 (475)
Q Consensus 205 l~~L~~L~l~~c~~l~~lp~-l~~~L~~L~i~~c~~L~~l 243 (475)
+++|+.|++++|. ++.+|. ++++|+.|+++++ .++.+
T Consensus 252 l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N-~l~~~ 289 (312)
T 1wwl_A 252 PSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYN-RLDRN 289 (312)
T ss_dssp CTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSS-CCCSC
T ss_pred cCCCCEEECCCCc-cChhhhhccCCceEEECCCC-CCCCC
Confidence 5566666666653 335543 3345666666554 34444
No 54
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=6.5e-20 Score=172.27 Aligned_cols=205 Identities=23% Similarity=0.309 Sum_probs=142.7
Q ss_pred CCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC-CcccCc-ccCCCCCCcEEeeeCCCCC
Q 011891 27 CNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA-IEELPS-SIGCLSRLLELNLGDCKNL 102 (475)
Q Consensus 27 ~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~-i~~lp~-~i~~l~~L~~L~L~~c~~l 102 (475)
|..++.+|. +. ++|++|++++| .++.+|. +..+++|++|++++|. ++.++. .+..+++|++|++++|..+
T Consensus 20 c~~l~~ip~---~~--~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l 93 (239)
T 2xwt_C 20 CKDIQRIPS---LP--PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93 (239)
T ss_dssp ECSCSSCCC---CC--TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC
T ss_pred ccCccccCC---CC--CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe
Confidence 334666664 22 36788888874 4566554 6677888888888886 777765 5677888888888875556
Q ss_pred Cccc-cccCCCCCCcEEEeeCcCCccCCcccCCCCCcC---EEEcCCCCCCCcccc-CCCCCCCCC-EEEecCCCCCCcc
Q 011891 103 KTLP-SSLCKLKSLEEICLTGSAIEELPSPIECLSALC---VLDLGDCKSLKSLKL-PFDGLYSLT-YLYLTDCAITELP 176 (475)
Q Consensus 103 ~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~---~L~L~~c~~l~~l~~-~~~~l~~L~-~L~L~~~~l~~lp 176 (475)
+.+| ..+..+++|++|++++|.++.+|. +..+++|+ .|++++|..+..++. .+.++++|+ .|++++|+++.+|
T Consensus 94 ~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~ 172 (239)
T 2xwt_C 94 TYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172 (239)
T ss_dssp CEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred eEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC
Confidence 6665 356778888888888888887776 67777777 888888745555554 367778888 8888888888777
Q ss_pred hhhCCCCCCceeEeccCC-ccccc-hHHhhc-CCcccccccccccccccCC-CccCcceeccccccc
Q 011891 177 ESLGLLSSLEELYLERNN-FERIP-ESIIRL-SKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCTT 239 (475)
Q Consensus 177 ~~l~~l~~L~~L~L~~n~-l~~lp-~~i~~l-~~L~~L~l~~c~~l~~lp~-l~~~L~~L~i~~c~~ 239 (475)
......++|+.|++++|+ ++.+| ..+..+ ++|+.|++++| .++.+|. ..++|+.|++.++..
T Consensus 173 ~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC--
T ss_pred HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCccC
Confidence 655444788888888884 77775 456677 78888888876 4555554 356677777666543
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.1e-19 Score=193.59 Aligned_cols=230 Identities=17% Similarity=0.240 Sum_probs=184.1
Q ss_pred CCCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC
Q 011891 1 MPHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA 77 (475)
Q Consensus 1 l~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~ 77 (475)
|++++|..++. .+..+++|++|+|++|. ++.+|. ..++++++|++|+|++| .+..+|. ++.+++|++|+|++|.
T Consensus 82 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPP-HVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN 158 (597)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCH-HHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc
Confidence 46788888874 78999999999999975 566654 45688999999999996 5667776 5789999999999999
Q ss_pred CcccCc-ccCCCCCCcEEeeeCCCCCCccccccCCC----------------------------------------CCCc
Q 011891 78 IEELPS-SIGCLSRLLELNLGDCKNLKTLPSSLCKL----------------------------------------KSLE 116 (475)
Q Consensus 78 i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~l----------------------------------------~~L~ 116 (475)
+..++. .++.+++|++|++++|.. ..++ ++.+ ++|+
T Consensus 159 l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~ 235 (597)
T 3oja_B 159 LERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT 235 (597)
T ss_dssp CCBCCTTTTTTCTTCCEEECTTSCC-SBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCC
T ss_pred CCCCChhhhhcCCcCcEEECcCCCC-CCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCC
Confidence 987655 688999999999998753 3222 1112 2345
Q ss_pred EEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcc
Q 011891 117 EICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE 196 (475)
Q Consensus 117 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~ 196 (475)
.|++++|.++.. ..+..+++|+.|++++|......|..+.++++|+.|+|++|.++.+|..+..+++|+.|+|++|.++
T Consensus 236 ~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 236 ILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp EEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC
Confidence 555555555543 5578899999999999997777777889999999999999999999988889999999999999999
Q ss_pred ccchHHhhcCCcccccccccccccccC-CCccCcceecccccc
Q 011891 197 RIPESIIRLSKLSSLLVSYCERLQSLP-KLPCNLYWLDAQHCT 238 (475)
Q Consensus 197 ~lp~~i~~l~~L~~L~l~~c~~l~~lp-~l~~~L~~L~i~~c~ 238 (475)
.+|..+..+++|+.|++++|. +..++ ...++|+.|++++++
T Consensus 315 ~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 315 HVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred ccCcccccCCCCCEEECCCCC-CCCcChhhcCCCCEEEeeCCC
Confidence 999999999999999999986 34443 345678888887754
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=1.3e-20 Score=184.91 Aligned_cols=224 Identities=17% Similarity=0.161 Sum_probs=174.7
Q ss_pred CCCCccccccc-ccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891 2 PHSNIEQLSES-VQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE 80 (475)
Q Consensus 2 ~~s~l~~L~~~-~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~ 80 (475)
..+++.+.+.. ...+++|++|+|++| .++.++. ..+.++++|++|+|++|. +...+++..+++|++|++++|.++.
T Consensus 18 s~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~ 94 (317)
T 3o53_A 18 TDSSLKQALASLRQSAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNYVQE 94 (317)
T ss_dssp CTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCH-HHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSSEEEE
T ss_pred cccchhhhHHHHhccCCCCCEEECcCC-ccCcCCH-HHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCCcccc
Confidence 34455555433 456779999999997 4555542 467899999999999964 5555568899999999999999987
Q ss_pred cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCccccCC-CC
Q 011891 81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPF-DG 158 (475)
Q Consensus 81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~~-~~ 158 (475)
++. .++|++|++++|. +..++. ..+++|++|++++|.++.++. .+..+++|+.|++++|......+..+ ..
T Consensus 95 l~~----~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 167 (317)
T 3o53_A 95 LLV----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167 (317)
T ss_dssp EEE----CTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred ccC----CCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhc
Confidence 764 4899999999975 444543 347889999999999998755 67889999999999998655444444 46
Q ss_pred CCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCC---ccCcceeccc
Q 011891 159 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQ 235 (475)
Q Consensus 159 l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~L~i~ 235 (475)
+++|+.|++++|.+++++.. ..+++|+.|++++|+++.+|..+..+++|+.|++++| .++.+|.. .++|+.|+++
T Consensus 168 l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp TTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECT
T ss_pred cCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEcc
Confidence 89999999999999998654 4589999999999999999888999999999999998 45566642 2455556555
Q ss_pred cc
Q 011891 236 HC 237 (475)
Q Consensus 236 ~c 237 (475)
++
T Consensus 246 ~N 247 (317)
T 3o53_A 246 GN 247 (317)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 57
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=2.6e-19 Score=171.64 Aligned_cols=206 Identities=22% Similarity=0.280 Sum_probs=152.3
Q ss_pred cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcc-cCCCCC
Q 011891 12 SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSS-IGCLSR 90 (475)
Q Consensus 12 ~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~ 90 (475)
....+++|+.|+++++. ++.++ .+..+++|++|++++| .+..++.+..+++|++|++++|.++.++.. +..+++
T Consensus 36 ~~~~l~~L~~L~l~~~~-i~~~~---~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSD-IKSVQ---GIQYLPNVRYLALGGN-KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp CHHHHTTCCEEECTTSC-CCCCT---TGGGCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred ccccccceeeeeeCCCC-ccccc---ccccCCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 34567888888888864 45444 4677888888888885 466677788888888888888888877654 578888
Q ss_pred CcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecC
Q 011891 91 LLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTD 169 (475)
Q Consensus 91 L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~ 169 (475)
|++|++++|......+..+..+++|++|++++|.++.++.. +..+++|+.|++++|......+..+.++++|+.|++++
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 88888888764444444567888888888888888877664 57788888888888864433333457788888888888
Q ss_pred CCCCCcch-hhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCCccC
Q 011891 170 CAITELPE-SLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCN 228 (475)
Q Consensus 170 ~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l~~~ 228 (475)
|++++++. .+..+++|+.|++++|.+. +.+++|+.|++..|.....+|.....
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccc
Confidence 88888554 4678888888888888765 23567888888877666666654333
No 58
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=3.3e-19 Score=188.53 Aligned_cols=133 Identities=18% Similarity=0.104 Sum_probs=102.0
Q ss_pred CCCCCCcEEEeeCcCCcc-CCcccCCCCCcCEEEcCCCCCCC--ccccCCCCCCCCCEEEecCCCCCC-cchh-hCCCCC
Q 011891 110 CKLKSLEEICLTGSAIEE-LPSPIECLSALCVLDLGDCKSLK--SLKLPFDGLYSLTYLYLTDCAITE-LPES-LGLLSS 184 (475)
Q Consensus 110 ~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~L~~c~~l~--~l~~~~~~l~~L~~L~L~~~~l~~-lp~~-l~~l~~ 184 (475)
..+++|++|++++|.++. +|..+..+++|+.|++++|.... .+|..+.++++|+.|++++|.+++ +|.. +..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 567889999999999885 67788999999999999987433 334557888999999999999988 7754 677889
Q ss_pred CceeEeccCCcc-ccchHHhhcCCcccccccccccccccCCC---ccCcceecccccccCccccCC
Q 011891 185 LEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLSGL 246 (475)
Q Consensus 185 L~~L~L~~n~l~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~L~i~~c~~L~~l~~~ 246 (475)
|+.|++++|+++ .+|..+. ++|+.|++++| .++.+|.- .++|+.|+++++ .++.++..
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHH
Confidence 999999999885 3443322 68999999988 56677652 367888888876 46666653
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=3.7e-21 Score=188.72 Aligned_cols=231 Identities=14% Similarity=0.087 Sum_probs=182.7
Q ss_pred CCCCCccccc-ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCc
Q 011891 1 MPHSNIEQLS-ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIE 79 (475)
Q Consensus 1 l~~s~l~~L~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~ 79 (475)
|++|+|+.++ ..+..+++|++|+|++|. ++..+. +..+++|++|++++| .+..++ ..++|++|++++|.++
T Consensus 41 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~---~~~l~~L~~L~Ls~n-~l~~l~---~~~~L~~L~l~~n~l~ 112 (317)
T 3o53_A 41 LSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNN-YVQELL---VGPSIETLHAANNNIS 112 (317)
T ss_dssp CTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE---ETTCTTCCEEECCSS-EEEEEE---ECTTCCEEECCSSCCS
T ss_pred CcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh---hhhcCCCCEEECcCC-cccccc---CCCCcCEEECCCCccC
Confidence 5678888886 678999999999999975 444432 778999999999996 344444 4489999999999999
Q ss_pred ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCC-ccc-CCCCCcCEEEcCCCCCCCccccCCC
Q 011891 80 ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP-SPI-ECLSALCVLDLGDCKSLKSLKLPFD 157 (475)
Q Consensus 80 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~i-~~l~~L~~L~L~~c~~l~~l~~~~~ 157 (475)
.++.. .+++|++|++++|......+..++.+++|++|++++|.++.++ ..+ ..+++|++|++++|. +..++.. .
T Consensus 113 ~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~ 188 (317)
T 3o53_A 113 RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ-V 188 (317)
T ss_dssp EEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC-C
T ss_pred CcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccccc-c
Confidence 87654 4789999999998665555667888999999999999998754 344 468999999999987 4444433 3
Q ss_pred CCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccc-cccCCC---ccCcceec
Q 011891 158 GLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERL-QSLPKL---PCNLYWLD 233 (475)
Q Consensus 158 ~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l-~~lp~l---~~~L~~L~ 233 (475)
.+++|+.|++++|.++++|..+..+++|+.|++++|+++.+|..+..+++|+.|++++|+.. ..+|.. .+.|+.++
T Consensus 189 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence 58899999999999999888889999999999999999999988889999999999998754 333332 34567777
Q ss_pred ccccccCccc
Q 011891 234 AQHCTTLESL 243 (475)
Q Consensus 234 i~~c~~L~~l 243 (475)
+.++..++..
T Consensus 269 l~~~~~l~~~ 278 (317)
T 3o53_A 269 KQTVKKLTGQ 278 (317)
T ss_dssp HHHHHHHHSS
T ss_pred CCCchhccCC
Confidence 7766655544
No 60
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=9.2e-20 Score=171.22 Aligned_cols=204 Identities=16% Similarity=0.202 Sum_probs=169.6
Q ss_pred CcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccc-cCCccc
Q 011891 5 NIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDG-TAIEEL 81 (475)
Q Consensus 5 ~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~-~~i~~l 81 (475)
+++++|. + .++|++|+++++ .++.+|. ..+.++++|++|++++|..++.++. +..+++|++|++++ |.++.+
T Consensus 22 ~l~~ip~-~--~~~l~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 22 DIQRIPS-L--PPSTQTLKLIET-HLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp SCSSCCC-C--CTTCCEEEEESC-CCSEECT-TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred CccccCC-C--CCcccEEEEeCC-cceEECH-HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 4677776 3 348999999996 4666664 4578899999999999766888775 77999999999998 999988
Q ss_pred Cc-ccCCCCCCcEEeeeCCCCCCccccccCCCCCCc---EEEeeCc-CCccCCcc-cCCCCCcC-EEEcCCCCCCCcccc
Q 011891 82 PS-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLE---EICLTGS-AIEELPSP-IECLSALC-VLDLGDCKSLKSLKL 154 (475)
Q Consensus 82 p~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~---~L~l~~~-~i~~lp~~-i~~l~~L~-~L~L~~c~~l~~l~~ 154 (475)
+. .+..+++|++|++++|. ++.+|. +..+++|+ +|++++| .++.+|.. +..+++|+ .|++++|.. ..+|.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~ 173 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQG 173 (239)
T ss_dssp CTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECT
T ss_pred CHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCH
Confidence 75 67899999999999975 566886 88888888 9999999 99988764 88899999 999999874 46665
Q ss_pred CCCCCCCCCEEEecCCC-CCCcc-hhhCCC-CCCceeEeccCCccccchHHhhcCCccccccccccc
Q 011891 155 PFDGLYSLTYLYLTDCA-ITELP-ESLGLL-SSLEELYLERNNFERIPESIIRLSKLSSLLVSYCER 218 (475)
Q Consensus 155 ~~~~l~~L~~L~L~~~~-l~~lp-~~l~~l-~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~ 218 (475)
.....++|+.|++++|. ++.+| ..+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++..
T Consensus 174 ~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp TTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred hhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 54344889999999995 99875 557888 9999999999999999865 789999999988754
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=1e-18 Score=167.27 Aligned_cols=193 Identities=29% Similarity=0.406 Sum_probs=157.1
Q ss_pred CCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCcccCccc-CCCCCCcE
Q 011891 17 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSI-GCLSRLLE 93 (475)
Q Consensus 17 ~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~~ 93 (475)
.+++.+++++ ..++.+|. .+ .++|+.|+|++| .+..+|. +..+++|++|++++|.++.++..+ ..+++|++
T Consensus 16 ~~~~~l~~~~-~~l~~ip~--~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 16 NNKNSVDCSS-KKLTAIPS--NI--PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTTTEEECTT-SCCSSCCS--CC--CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred CCCCEEEccC-CCCCccCC--CC--CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence 3578899988 46778875 22 267999999995 4666664 788999999999999999888754 78999999
Q ss_pred EeeeCCCCCCccc-cccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCcccc-CCCCCCCCCEEEecCC
Q 011891 94 LNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDC 170 (475)
Q Consensus 94 L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~-~~~~l~~L~~L~L~~~ 170 (475)
|++++|.. ..+| ..+..+++|++|++++|.++.++. .+..+++|++|++++|.. ..++. .+..+++|+.|++++|
T Consensus 90 L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 90 LWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp EECCSSCC-CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcC-CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC-CccCHhHccCCcccceeEecCC
Confidence 99999764 4454 456889999999999999998765 468899999999999874 44444 4688999999999999
Q ss_pred CCCCcch-hhCCCCCCceeEeccCCccccch-HHhhcCCcccccccccc
Q 011891 171 AITELPE-SLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 171 ~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~l~~c~ 217 (475)
.++.++. .+..+++|+.|++++|+++.+|. .+..+++|+.|++++|+
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 9999765 47889999999999999988875 47789999999999885
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=6.7e-20 Score=193.71 Aligned_cols=201 Identities=19% Similarity=0.246 Sum_probs=96.6
Q ss_pred cccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC---------------------cCCCCCC
Q 011891 10 SESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE---------------------ISSAGNI 68 (475)
Q Consensus 10 ~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~---------------------i~~l~~L 68 (475)
++.+..+++|+.|++++|. ++.+|. .+..+ +|+.|++++|. +..+|. ...+++|
T Consensus 275 ~~~~~~l~~L~~L~l~~~~-l~~l~~--~~~~~-~L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L 349 (570)
T 2z63_A 275 IDLFNCLTNVSSFSLVSVT-IERVKD--FSYNF-GWQHLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349 (570)
T ss_dssp TTTTGGGTTCSEEEEESCE-ECSCCB--CCSCC-CCSEEEEESCB-CSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTC
T ss_pred hhhhcCcCcccEEEecCcc-chhhhh--hhccC-CccEEeeccCc-ccccCcccccccCEEeCcCCccccccccccCCCC
Confidence 3445566666666666643 344443 23444 56666666542 334443 1334445
Q ss_pred cEEEccccCCccc---CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc--ccCCCCCcCEEEc
Q 011891 69 EKILLDGTAIEEL---PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS--PIECLSALCVLDL 143 (475)
Q Consensus 69 ~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~L 143 (475)
++|++++|.+..+ +..+..+++|++|++++|. +..+|..+..+++|++|++++|.+...+. .+..+++|+.|++
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred CEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 5555555444432 3344444555555555432 22333334445555555555554443322 3444555555555
Q ss_pred CCCCCCCccccCCCCCCCCCEEEecCCCCCC--cchhhCCCCCCceeEeccCCcccc-chHHhhcCCccccccccc
Q 011891 144 GDCKSLKSLKLPFDGLYSLTYLYLTDCAITE--LPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYC 216 (475)
Q Consensus 144 ~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c 216 (475)
++|......+..+.++++|+.|++++|.+++ +|..+..+++|+.|++++|+++.+ |..+..+++|+.|++++|
T Consensus 429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 5554433344444445555555555555441 444455555555555555555433 344445555555555554
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=1e-18 Score=167.26 Aligned_cols=168 Identities=32% Similarity=0.463 Sum_probs=95.2
Q ss_pred CcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCc-ccCCCCCCcEEeeeCCCCCCccccc-cCCCCCCcEEEee
Q 011891 45 LVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSS-LCKLKSLEEICLT 121 (475)
Q Consensus 45 L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~l~ 121 (475)
++.+++++ ..++.+|. +. ++|++|++++|.++.++. .+.++++|++|++++|. ++.+|.. +..+++|++|+++
T Consensus 18 ~~~l~~~~-~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSS-KKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccC-CCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECC
Confidence 45566655 34555554 32 456666666666665554 45566666666666643 3344433 3556666666666
Q ss_pred CcCCccCCcc-cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchh-hCCCCCCceeEeccCCccccc
Q 011891 122 GSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFERIP 199 (475)
Q Consensus 122 ~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp 199 (475)
+|.++.+|.. +..+++|++|++++|......+..+..+++|+.|++++|.++++|.. +..+++|+.|++++|.++.++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 6666655543 35566666666666553333333345566666666666666665433 455666666666666666555
Q ss_pred h-HHhhcCCccccccccc
Q 011891 200 E-SIIRLSKLSSLLVSYC 216 (475)
Q Consensus 200 ~-~i~~l~~L~~L~l~~c 216 (475)
. .+..+++|+.|++++|
T Consensus 174 ~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp TTTTTTCTTCCEEECCSS
T ss_pred hhHhccCCCcCEEECCCC
Confidence 3 3555666666666665
No 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=3.4e-19 Score=197.38 Aligned_cols=124 Identities=17% Similarity=0.164 Sum_probs=81.5
Q ss_pred CCCCcccc-cccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCc
Q 011891 2 PHSNIEQL-SESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE 79 (475)
Q Consensus 2 ~~s~l~~L-~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~ 79 (475)
++|+|+.+ +..+..+++|++|+|++|.....++. ..+.++++|++|+|++|......|. +..+++|++|+|++|.+.
T Consensus 32 s~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~-~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 110 (844)
T 3j0a_A 32 SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK-EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS 110 (844)
T ss_dssp ESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECT-TTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCS
T ss_pred CCCcCCccChhHCcccccCeEEeCCCCCCccccCH-HHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCC
Confidence 45666666 35677777777777777755555532 3567777777777777543333354 667777777777777776
Q ss_pred c-cCcc--cCCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeCcCCc
Q 011891 80 E-LPSS--IGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIE 126 (475)
Q Consensus 80 ~-lp~~--i~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~ 126 (475)
. +|.. ++++++|++|++++|......+ ..++++++|++|++++|.++
T Consensus 111 ~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 4 4443 6777777777777765444332 45677777777777777664
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=5.7e-20 Score=190.93 Aligned_cols=218 Identities=16% Similarity=0.144 Sum_probs=172.5
Q ss_pred cccccccCC----CCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCc
Q 011891 8 QLSESVQHH----GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPS 83 (475)
Q Consensus 8 ~L~~~~~~l----~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~ 83 (475)
.++.++..+ ++|+.|+|++|. ++.++. ..+.++++|++|+|++|. +...+++..+++|++|+|++|.++.+|.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~l~~ 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNP-LSQISA-ADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNYVQELLV 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSC-CCCCCG-GGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSEEEEEEE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCc-CCCCCH-HHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCcCCCCCC
Confidence 344444444 489999999974 555543 467899999999999964 5555558899999999999999988774
Q ss_pred ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCCCCCCccccCCC-CCCC
Q 011891 84 SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLPFD-GLYS 161 (475)
Q Consensus 84 ~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~l~~~~~-~l~~ 161 (475)
.++|++|++++|... .++. ..+++|+.|++++|.++.+ |..+..+++|+.|++++|......|..+. .+++
T Consensus 98 ----~~~L~~L~L~~N~l~-~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 98 ----GPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp ----CTTCCEEECCSSCCC-CEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ----CCCcCEEECcCCcCC-CCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 389999999997644 4443 3468899999999999976 55788899999999999986665665554 7899
Q ss_pred CCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCC---ccCcceeccccc
Q 011891 162 LTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHC 237 (475)
Q Consensus 162 L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~L~i~~c 237 (475)
|+.|+|++|.++++|. ...+++|+.|+|++|.++.+|..+..+++|+.|++++|. +..+|.. .++|+.|+++++
T Consensus 171 L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 171 LEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp CCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTC
T ss_pred ccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCC
Confidence 9999999999999865 346999999999999999998889999999999999984 5556642 245666666554
No 66
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=4.5e-19 Score=191.67 Aligned_cols=145 Identities=22% Similarity=0.298 Sum_probs=102.9
Q ss_pred CCCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC
Q 011891 1 MPHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA 77 (475)
Q Consensus 1 l~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~ 77 (475)
|++++++.++. .+..+++|++|+|++|. ++.++. ..+.++++|++|+|++| .+..+|. ++.+++|++|++++|.
T Consensus 32 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~ 108 (680)
T 1ziw_A 32 LTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEP-ELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS 108 (680)
T ss_dssp CCSSCCCCCCGGGGGGGTTCSEEECCSSC-CCCCCT-THHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCCCCCCCcCHHHHhCCCcCcEEECCCCc-cCccCH-HHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc
Confidence 45667777764 47778888888888764 344432 35667788888888885 5666665 7788888888888888
Q ss_pred CcccC-cccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc---cCCCCCcCEEEcCCCCC
Q 011891 78 IEELP-SSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP---IECLSALCVLDLGDCKS 148 (475)
Q Consensus 78 i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~---i~~l~~L~~L~L~~c~~ 148 (475)
+..++ ..++++++|++|++++|......|..++++++|++|++++|.++.++.. ...+++|+.|++++|..
T Consensus 109 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 87766 4677888888888888766556666677788888888888877766543 23456777777777653
No 67
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=1e-18 Score=179.92 Aligned_cols=209 Identities=26% Similarity=0.346 Sum_probs=113.3
Q ss_pred CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCccc
Q 011891 2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEEL 81 (475)
Q Consensus 2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~l 81 (475)
.+++++.+|.. .++|++|++++| .++.+|. .+++|++|++++| .+..+|.+. ++|++|++++|.++.+
T Consensus 79 ~~~~l~~lp~~---~~~L~~L~l~~n-~l~~lp~-----~~~~L~~L~l~~n-~l~~l~~~~--~~L~~L~L~~n~l~~l 146 (454)
T 1jl5_A 79 NNLGLSSLPEL---PPHLESLVASCN-SLTELPE-----LPQSLKSLLVDNN-NLKALSDLP--PLLEYLGVSNNQLEKL 146 (454)
T ss_dssp TTSCCSCCCSC---CTTCSEEECCSS-CCSSCCC-----CCTTCCEEECCSS-CCSCCCSCC--TTCCEEECCSSCCSSC
T ss_pred cCCccccCCCC---cCCCCEEEccCC-cCCcccc-----ccCCCcEEECCCC-ccCcccCCC--CCCCEEECcCCCCCCC
Confidence 45556665542 356777777764 3444553 1255666666664 344444322 4666666666666666
Q ss_pred CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCC
Q 011891 82 PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYS 161 (475)
Q Consensus 82 p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~ 161 (475)
| .++++++|++|++++|. ++.+|..+ .+|++|++++|.++.+| .+..+++|+.|++++|.. ..+|.. .++
T Consensus 147 p-~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l-~~l~~~---~~~ 216 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL-KKLPDL---PLS 216 (454)
T ss_dssp C-CCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC-SSCCCC---CTT
T ss_pred c-ccCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcC-CcCCCC---cCc
Confidence 5 36666666666666653 33455432 35666666666666655 455666666666666542 223321 235
Q ss_pred CCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCCccCcceeccccc
Q 011891 162 LTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHC 237 (475)
Q Consensus 162 L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l~~~L~~L~i~~c 237 (475)
|+.|++++|.++++|. ++.+++|+.|++++|+++.+|.. +++|+.|++++|. ++.+|..+++|+.|+++++
T Consensus 217 L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 217 LESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp CCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred ccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence 5566666665555553 55555566666666555555532 2455555555542 3345554555555555543
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=5.1e-19 Score=172.78 Aligned_cols=187 Identities=22% Similarity=0.293 Sum_probs=162.8
Q ss_pred CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891 1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE 80 (475)
Q Consensus 1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~ 80 (475)
+.+++++.++ ++..+++|++|+|++| .++.++. +.++++|++|++++| .+..++.+..+++|++|++++|.++.
T Consensus 48 l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~ 121 (308)
T 1h6u_A 48 AFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGN-PLKNVSAIAGLQSIKTLDLTSTQITD 121 (308)
T ss_dssp CTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSC-CCSCCGGGTTCTTCCEEECTTSCCCC
T ss_pred eeCCCccCch-hhhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCC-cCCCchhhcCCCCCCEEECCCCCCCC
Confidence 4567888886 7899999999999997 5566654 788999999999996 47888889999999999999999998
Q ss_pred cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCC
Q 011891 81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLY 160 (475)
Q Consensus 81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~ 160 (475)
++. +..+++|++|++++|. +..++. +..+++|++|++++|.++.++. +..+++|+.|++++|.. ..++. +..++
T Consensus 122 ~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~ 195 (308)
T 1h6u_A 122 VTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI-SDISP-LASLP 195 (308)
T ss_dssp CGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCT
T ss_pred chh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc-CcChh-hcCCC
Confidence 875 8899999999999975 556665 8899999999999999998877 89999999999999974 44443 67899
Q ss_pred CCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccch
Q 011891 161 SLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE 200 (475)
Q Consensus 161 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~ 200 (475)
+|+.|++++|.+++++. +..+++|+.|++++|.++..|.
T Consensus 196 ~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 196 NLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence 99999999999999874 8999999999999999987663
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=9e-19 Score=169.54 Aligned_cols=190 Identities=19% Similarity=0.217 Sum_probs=162.9
Q ss_pred CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891 1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE 80 (475)
Q Consensus 1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~ 80 (475)
+.+++++.+|.++. ++++.|+|++|. ++.++. ..+.++++|++|+|++| .+..++..+.+++|++|++++|.++.
T Consensus 17 ~~~~~l~~ip~~~~--~~l~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~ 91 (290)
T 1p9a_G 17 CDKRNLTALPPDLP--KDTTILHLSENL-LYTFSL-ATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQLQS 91 (290)
T ss_dssp CTTSCCSSCCSCCC--TTCCEEECTTSC-CSEEEG-GGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCSSCCSS
T ss_pred CCCCCCCcCCCCCC--CCCCEEEcCCCc-CCccCH-HHhhcCCCCCEEECCCC-ccCcccCCCCCCcCCEEECCCCcCCc
Confidence 35678888987764 799999999975 444432 46788999999999995 57778777899999999999999999
Q ss_pred cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCCCCCccccC-CCC
Q 011891 81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLP-FDG 158 (475)
Q Consensus 81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~-~~~ 158 (475)
+|..+..+++|++|++++|......|..+..+++|++|++++|.++.+|.. +..+++|+.|++++|. +..+|.. +.+
T Consensus 92 l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~ 170 (290)
T 1p9a_G 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNG 170 (290)
T ss_dssp CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTT
T ss_pred CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcC
Confidence 999999999999999999754443446789999999999999999988875 5789999999999997 4556544 578
Q ss_pred CCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcc
Q 011891 159 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE 196 (475)
Q Consensus 159 l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~ 196 (475)
+++|+.|+|++|.++.+|..+....+|+.|+|++|.+.
T Consensus 171 l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 171 LENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 99999999999999999999999999999999999875
No 70
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=189.16 Aligned_cols=124 Identities=24% Similarity=0.383 Sum_probs=60.3
Q ss_pred CCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCc-C-cCCCCCCcEEEccccCC
Q 011891 2 PHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTAI 78 (475)
Q Consensus 2 ~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p-~-i~~l~~L~~L~L~~~~i 78 (475)
++|+++.++. .+..+++|++|+|++|. ++.++. ..+.++++|++|+|++|. +..+| . ++.+++|++|++++|.+
T Consensus 36 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 112 (570)
T 2z63_A 36 SFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIED-GAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNL 112 (570)
T ss_dssp CSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECT-TTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cCCccCccChhHhhCCCCceEEECCCCc-CCccCc-ccccCchhCCEEeCcCCc-CCccCHhhhcCcccccccccccccc
Confidence 3444444432 44555555555555542 333322 234455555555555532 33332 2 44555555555555555
Q ss_pred cccCc-ccCCCCCCcEEeeeCCCCCC-ccccccCCCCCCcEEEeeCcCCccC
Q 011891 79 EELPS-SIGCLSRLLELNLGDCKNLK-TLPSSLCKLKSLEEICLTGSAIEEL 128 (475)
Q Consensus 79 ~~lp~-~i~~l~~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~l~~~~i~~l 128 (475)
+.++. .++++++|++|++++|.... .+|..++++++|++|++++|.++.+
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred ccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 54443 35555555555555543322 2455555555555555555555433
No 71
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=1.1e-18 Score=188.52 Aligned_cols=245 Identities=23% Similarity=0.246 Sum_probs=171.5
Q ss_pred cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCC-CCCCcC--cC--CCCCCcEEEccccCCccc-Cccc
Q 011891 12 SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSK-LKSLPE--IS--SAGNIEKILLDGTAIEEL-PSSI 85 (475)
Q Consensus 12 ~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~-l~~~p~--i~--~l~~L~~L~L~~~~i~~l-p~~i 85 (475)
.++.+++|++|++++|. ++.++. ..+.++++|++|++++|.. +..++. +. ..++|+.|++++|.+..+ |..+
T Consensus 324 ~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~ 401 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDND-IPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401 (680)
T ss_dssp TTTTCTTCCEEECCSCC-BCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT
T ss_pred hcccCCCCCEEECCCCc-cCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh
Confidence 67889999999999875 444443 4577889999999998742 333333 22 235788888888888865 4567
Q ss_pred CCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeCcCCccCC-cccCCCCCcCEEEcCCCCC--CCccccCCCCCCC
Q 011891 86 GCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKS--LKSLKLPFDGLYS 161 (475)
Q Consensus 86 ~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~c~~--l~~l~~~~~~l~~ 161 (475)
..+++|++|++++|.....+| ..+..+++|++|++++|.+..++ ..+..+++|+.|++++|.. +..+|..+.++++
T Consensus 402 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~ 481 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481 (680)
T ss_dssp TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCC
Confidence 788888888888877655565 56778888888888888877553 4577788888888888764 2456666778888
Q ss_pred CCEEEecCCCCCCcch-hhCCCCCCceeEeccCCccccch---------HHhhcCCcccccccccccccccCC--C--cc
Q 011891 162 LTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPE---------SIIRLSKLSSLLVSYCERLQSLPK--L--PC 227 (475)
Q Consensus 162 L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~---------~i~~l~~L~~L~l~~c~~l~~lp~--l--~~ 227 (475)
|+.|++++|+++.++. .+..+++|+.|++++|+++.++. .+..+++|+.|++++| .++.+|. + .+
T Consensus 482 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLF 560 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHccccc
Confidence 8888888888887654 46778888888888888765432 2577788888888877 4556663 1 35
Q ss_pred CcceecccccccCccccCCCC-C-cceeEEEecCC
Q 011891 228 NLYWLDAQHCTTLESLSGLFS-S-YKCVFFYLNEN 260 (475)
Q Consensus 228 ~L~~L~i~~c~~L~~l~~~~~-~-~~~~~l~~~~c 260 (475)
+|+.|+++++ .++.++.... . .....+.+.++
T Consensus 561 ~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 561 ELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence 6777777654 4665554321 1 23445666555
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=7e-20 Score=190.29 Aligned_cols=207 Identities=14% Similarity=0.064 Sum_probs=173.7
Q ss_pred CCCCCccccc-ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCc
Q 011891 1 MPHSNIEQLS-ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIE 79 (475)
Q Consensus 1 l~~s~l~~L~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~ 79 (475)
|++|+|..++ ..+..+++|++|+|++|. ++..+. +..+++|++|+|++| .+..+| ..++|++|++++|.+.
T Consensus 41 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~l~~l~---~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 41 LSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNN-YVQELL---VGPSIETLHAANNNIS 112 (487)
T ss_dssp CCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEECCSS-EEEEEE---ECTTCCEEECCSSCCC
T ss_pred eeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEEecCC-cCCCCC---CCCCcCEEECcCCcCC
Confidence 5678888886 689999999999999975 444432 778999999999996 455544 3489999999999999
Q ss_pred ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCcc-CCcccC-CCCCcCEEEcCCCCCCCccccCCC
Q 011891 80 ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE-LPSPIE-CLSALCVLDLGDCKSLKSLKLPFD 157 (475)
Q Consensus 80 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~-lp~~i~-~l~~L~~L~L~~c~~l~~l~~~~~ 157 (475)
.++.. .+++|++|++++|......|..++.+++|++|++++|.++. .|..+. .+++|+.|++++|.. ..++. ..
T Consensus 113 ~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l-~~~~~-~~ 188 (487)
T 3oja_A 113 RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKG-QV 188 (487)
T ss_dssp CEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CEEEC-CC
T ss_pred CCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc-ccccc-cc
Confidence 87754 57899999999987766667788899999999999999996 455554 789999999999984 44443 34
Q ss_pred CCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccc
Q 011891 158 GLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERL 219 (475)
Q Consensus 158 ~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l 219 (475)
.+++|+.|+|++|.++++|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|+..
T Consensus 189 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 68999999999999999888899999999999999999999988999999999999998654
No 73
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=6.1e-19 Score=195.30 Aligned_cols=96 Identities=18% Similarity=0.239 Sum_probs=60.1
Q ss_pred cccc-cccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC---cCCCCCCcEEEccccCCccc
Q 011891 6 IEQL-SESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE---ISSAGNIEKILLDGTAIEEL 81 (475)
Q Consensus 6 l~~L-~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~---i~~l~~L~~L~L~~~~i~~l 81 (475)
+..+ ++.++++++|++|+|++|..-...| ..+.++++|++|+|++|.....+|. +..+++|++|+|++|.+..+
T Consensus 61 ~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~ 138 (844)
T 3j0a_A 61 PLTIDKEAFRNLPNLRILDLGSSKIYFLHP--DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138 (844)
T ss_dssp CCEECTTTTSSCTTCCEEECTTCCCCEECT--TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred ccccCHHHhcCCCCCCEEECCCCcCcccCH--hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence 3344 4567777777777777764333323 3566777777777777644443443 56777777777777777654
Q ss_pred C--cccCCCCCCcEEeeeCCCCCC
Q 011891 82 P--SSIGCLSRLLELNLGDCKNLK 103 (475)
Q Consensus 82 p--~~i~~l~~L~~L~L~~c~~l~ 103 (475)
+ ..++++++|++|++++|....
T Consensus 139 ~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 139 YLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCGGGGTCSSCCEEEEESSCCCC
T ss_pred ccchhHhhCCCCCEEECCCCcCCe
Confidence 2 456777777777777765433
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=2e-18 Score=183.64 Aligned_cols=208 Identities=25% Similarity=0.295 Sum_probs=151.4
Q ss_pred CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891 1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE 80 (475)
Q Consensus 1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~ 80 (475)
|++|+|+.+|. .+++|++|+|++|. ++.+|. .+++|++|+|++| .+..+|. .+++|+.|++++|.++.
T Consensus 68 L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~Ls~N-~l~~l~~--~l~~L~~L~L~~N~l~~ 135 (622)
T 3g06_A 68 IPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELSIFSN-PLTHLPA--LPSGLCKLWIFGNQLTS 135 (622)
T ss_dssp ECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEEECSC-CCCCCCC--CCTTCCEEECCSSCCSC
T ss_pred ecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEECcCC-cCCCCCC--CCCCcCEEECCCCCCCc
Confidence 46788888887 57899999999974 677774 5688899999885 5666766 55777777777777777
Q ss_pred cCcccCCCCCCcEEeeeCCCCCCccccccC-----------------CCCCCcEEEeeCcCCccCCcccCCCCCcCEEEc
Q 011891 81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLC-----------------KLKSLEEICLTGSAIEELPSPIECLSALCVLDL 143 (475)
Q Consensus 81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~-----------------~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L 143 (475)
+|.. +++|++|++++|. +..+|..+. .+++|+.|++++|.++.+|.. +++|+.|++
T Consensus 136 lp~~---l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L 208 (622)
T 3g06_A 136 LPVL---PPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL---PSELYKLWA 208 (622)
T ss_dssp CCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEEC
T ss_pred CCCC---CCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc---cchhhEEEC
Confidence 7763 3677777777753 334433222 237788889998888887764 468888888
Q ss_pred CCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccC
Q 011891 144 GDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLP 223 (475)
Q Consensus 144 ~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp 223 (475)
++|. +..+|. .+++|+.|++++|.++.+| ..+++|+.|++++|+++.+|. .+++|+.|++++| .++.+|
T Consensus 209 ~~N~-l~~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp 277 (622)
T 3g06_A 209 YNNR-LTSLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRN-QLTRLP 277 (622)
T ss_dssp CSSC-CSSCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCCSCC
T ss_pred cCCc-ccccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCC-CCCcCC
Confidence 8876 445553 3577888888888888887 466888888888888888886 5788888888887 455666
Q ss_pred CC---ccCcceecccccc
Q 011891 224 KL---PCNLYWLDAQHCT 238 (475)
Q Consensus 224 ~l---~~~L~~L~i~~c~ 238 (475)
.. .++|+.|++++++
T Consensus 278 ~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 278 ESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp GGGGGSCTTCEEECCSCC
T ss_pred HHHhhccccCEEEecCCC
Confidence 42 2556667776654
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=8.9e-19 Score=167.90 Aligned_cols=211 Identities=21% Similarity=0.254 Sum_probs=166.1
Q ss_pred CCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEe
Q 011891 16 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 95 (475)
Q Consensus 16 l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 95 (475)
+.++..+++.++ .+.. ......+++|+.|++++| .+..++.+..+++|++|++++|.+..++ .+..+++|++|+
T Consensus 18 ~~~l~~l~l~~~-~~~~---~~~~~~l~~L~~L~l~~~-~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~ 91 (272)
T 3rfs_A 18 FAETIKANLKKK-SVTD---AVTQNELNSIDQIIANNS-DIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHHTCS-CTTS---EECHHHHTTCCEEECTTS-CCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEE
T ss_pred HHHHHHHHhcCc-cccc---ccccccccceeeeeeCCC-CcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEE
Confidence 344555566553 2222 234567889999999995 5778888999999999999999999865 788999999999
Q ss_pred eeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCC
Q 011891 96 LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE 174 (475)
Q Consensus 96 L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~ 174 (475)
+++|......+..+..+++|++|++++|.++.++.. +..+++|++|++++|......+..+.++++|+.|++++|++++
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 999865444445578999999999999999988765 6889999999999997443333345889999999999999999
Q ss_pred cchh-hCCCCCCceeEeccCCccccch-HHhhcCCcccccccccccccccCCCccCcceecccc
Q 011891 175 LPES-LGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQH 236 (475)
Q Consensus 175 lp~~-l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~l~~~L~~L~i~~ 236 (475)
++.. ++.+++|+.|++++|+++.++. .+..+++|+.|++++|+..... +.++.|++..
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~----~~l~~l~~~~ 231 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC----PGIRYLSEWI 231 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT----TTTHHHHHHH
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC----cHHHHHHHHH
Confidence 6554 6889999999999999987774 4688999999999998644332 3455555444
No 76
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=3.4e-18 Score=182.46 Aligned_cols=123 Identities=24% Similarity=0.367 Sum_probs=102.4
Q ss_pred CCCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC
Q 011891 1 MPHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA 77 (475)
Q Consensus 1 l~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~ 77 (475)
|++|+|+.++. .+.++++|++|+|++| .++.+++ ..+.++++|++|+|++| .++.+|. +..+++|++|+|++|.
T Consensus 59 Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~-~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~ 135 (635)
T 4g8a_A 59 LSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN 135 (635)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECT-TTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTSC
T ss_pred eeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcCh-hHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCCc
Confidence 57899999984 6899999999999997 4666654 45788999999999996 5777775 7899999999999999
Q ss_pred CcccCc-ccCCCCCCcEEeeeCCCCCC-ccccccCCCCCCcEEEeeCcCCc
Q 011891 78 IEELPS-SIGCLSRLLELNLGDCKNLK-TLPSSLCKLKSLEEICLTGSAIE 126 (475)
Q Consensus 78 i~~lp~-~i~~l~~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~l~~~~i~ 126 (475)
++.++. .++++++|++|++++|.... .+|..++.+++|++|++++|.++
T Consensus 136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 998876 58899999999999976433 46778888999999998887654
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=2e-19 Score=175.74 Aligned_cols=216 Identities=14% Similarity=0.071 Sum_probs=137.6
Q ss_pred CCcEEeccCCCCccC-CCChhhccCCCCCcEEEEeCCCCCCCCcC-c--CCCCCCcEEEccccCCccc-C----cccCCC
Q 011891 18 KLNQIIMAACNIFTK-TPNPSLIQHLNKLVILNLSGCSKLKSLPE-I--SSAGNIEKILLDGTAIEEL-P----SSIGCL 88 (475)
Q Consensus 18 ~L~~L~Ls~~~~l~~-~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i--~~l~~L~~L~L~~~~i~~l-p----~~i~~l 88 (475)
.++.+.+.++..-.. +........+++|++|++++|...+..|. + ..+++|++|++++|.+... + ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 456677766432110 00011122345688888888765555555 4 6778888888888877742 2 233467
Q ss_pred CCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCcc---CC--cccCCCCCcCEEEcCCCCCCCccccC----CCCC
Q 011891 89 SRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE---LP--SPIECLSALCVLDLGDCKSLKSLKLP----FDGL 159 (475)
Q Consensus 89 ~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~---lp--~~i~~l~~L~~L~L~~c~~l~~l~~~----~~~l 159 (475)
++|++|++++|......|..++.+++|++|++++|.+.. ++ ..+..+++|++|++++|.. +.++.. +..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcC
Confidence 788888888876655555677778888888888887652 32 2335677888888888763 333321 3466
Q ss_pred CCCCEEEecCCCCCCc-chhhCCC---CCCceeEeccCCccccchHHhhcCCcccccccccccccccCC--CccCcceec
Q 011891 160 YSLTYLYLTDCAITEL-PESLGLL---SSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK--LPCNLYWLD 233 (475)
Q Consensus 160 ~~L~~L~L~~~~l~~l-p~~l~~l---~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~--l~~~L~~L~ 233 (475)
++|+.|+|++|.++++ |..+..+ ++|++|++++|+++.+|..+. ++|+.|++++|+ ++.+|. -.++|+.|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~ 300 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR-LNRAPQPDELPEVDNLT 300 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC-CCSCCCTTSCCCCSCEE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc-CCCCchhhhCCCccEEE
Confidence 7788888888888774 6665555 588888888888887776553 788888888774 444432 235666666
Q ss_pred cccc
Q 011891 234 AQHC 237 (475)
Q Consensus 234 i~~c 237 (475)
+++.
T Consensus 301 L~~N 304 (310)
T 4glp_A 301 LDGN 304 (310)
T ss_dssp CSST
T ss_pred CcCC
Confidence 6554
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=2.2e-18 Score=165.36 Aligned_cols=192 Identities=22% Similarity=0.332 Sum_probs=157.8
Q ss_pred CCCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCc-C-cCCCCCCcEEEccccC
Q 011891 1 MPHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTA 77 (475)
Q Consensus 1 l~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p-~-i~~l~~L~~L~L~~~~ 77 (475)
|++|+++.++. .+..+++|++|++++| .++.++. ..+.++++|++|++++|. +..++ . +..+++|++|++++|.
T Consensus 35 ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 111 (276)
T 2z62_A 35 LSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN 111 (276)
T ss_dssp CTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECT-TTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCCcccccCHhHhccccCCcEEECCCC-cCCccCH-HHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCC
Confidence 46788888875 7889999999999997 4555553 357889999999999964 55554 3 7899999999999999
Q ss_pred CcccCc-ccCCCCCCcEEeeeCCCCCC-ccccccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcC----EEEcCCCCCCC
Q 011891 78 IEELPS-SIGCLSRLLELNLGDCKNLK-TLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALC----VLDLGDCKSLK 150 (475)
Q Consensus 78 i~~lp~-~i~~l~~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~----~L~L~~c~~l~ 150 (475)
+..++. .++.+++|++|++++|.... .+|..+..+++|++|++++|.++.++. .+..+.+|+ .|++++|.. .
T Consensus 112 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l-~ 190 (276)
T 2z62_A 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-N 190 (276)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCC-C
T ss_pred ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcc-c
Confidence 998766 68899999999999976544 378899999999999999999997764 555555555 899999874 4
Q ss_pred ccccCCCCCCCCCEEEecCCCCCCcchh-hCCCCCCceeEeccCCcc
Q 011891 151 SLKLPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFE 196 (475)
Q Consensus 151 ~l~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~L~~n~l~ 196 (475)
.++.......+|+.|++++|.++++|.. +..+++|+.|++++|++.
T Consensus 191 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 191 FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 4554444556899999999999997765 588999999999999986
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=2.6e-18 Score=170.77 Aligned_cols=226 Identities=15% Similarity=0.135 Sum_probs=174.0
Q ss_pred CCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcE-EEccccCCc
Q 011891 3 HSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEK-ILLDGTAIE 79 (475)
Q Consensus 3 ~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~-L~L~~~~i~ 79 (475)
+++++++|.++ .+++++|+|++| .++.+|. ..+.++++|++|+|++|..++.+|. +..+++|++ +.+.+|.++
T Consensus 18 ~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 18 ESKVTEIPSDL--PRNAIELRFVLT-KLRVIQK-GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp STTCCSCCTTC--CTTCSEEEEESC-CCSEECT-TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred CCCCCccCcCc--CCCCCEEEccCC-cCCCcCH-HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 56788999876 478999999995 5777775 3578899999999999877777775 678888776 566778999
Q ss_pred ccC-cccCCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeC-cCCccCCcc-cCCC-CCcCEEEcCCCCCCCcccc
Q 011891 80 ELP-SSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTG-SAIEELPSP-IECL-SALCVLDLGDCKSLKSLKL 154 (475)
Q Consensus 80 ~lp-~~i~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~-~~i~~lp~~-i~~l-~~L~~L~L~~c~~l~~l~~ 154 (475)
.++ ..+..+++|++|++++|.. ..+| .......++..|++.+ +.+..++.. +..+ ..++.|++++|. ++.++.
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~ 171 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHN 171 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECT
T ss_pred ccCchhhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCCh
Confidence 885 4678999999999999754 4444 3445667788898876 577777653 4444 468899999887 556666
Q ss_pred CCCCCCCCCEEEecC-CCCCCcch-hhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCC--ccCcc
Q 011891 155 PFDGLYSLTYLYLTD-CAITELPE-SLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLY 230 (475)
Q Consensus 155 ~~~~l~~L~~L~L~~-~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l--~~~L~ 230 (475)
......+|+.|++.+ +.++.+|. .+..+++|+.|++++|+++.+|.. .+.+|+.|.+.++..++.+|.+ .++|+
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~ 249 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALM 249 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCC
T ss_pred hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChh
Confidence 655667899999985 56777876 468899999999999999999853 3677888888888888888864 35677
Q ss_pred eecccc
Q 011891 231 WLDAQH 236 (475)
Q Consensus 231 ~L~i~~ 236 (475)
.+++.+
T Consensus 250 ~l~l~~ 255 (350)
T 4ay9_X 250 EASLTY 255 (350)
T ss_dssp EEECSC
T ss_pred hCcCCC
Confidence 776643
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=1e-17 Score=166.50 Aligned_cols=219 Identities=24% Similarity=0.332 Sum_probs=179.2
Q ss_pred cEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCc-ccCc-ccCCCCCCcEEe
Q 011891 20 NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIE-ELPS-SIGCLSRLLELN 95 (475)
Q Consensus 20 ~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~-~lp~-~i~~l~~L~~L~ 95 (475)
++++.++ +.++++|. .+ .+++++|+|++ +.++.+|. +..+++|++|+|++|.+. .+|. .+.++++|.++.
T Consensus 12 ~~v~C~~-~~Lt~iP~--~l--~~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPS--DL--PRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEES-TTCCSCCT--TC--CTTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecC-CCCCccCc--Cc--CCCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 5666665 57888885 23 36799999999 56888886 789999999999999975 4665 568899988876
Q ss_pred eeCCCCCCcc-ccccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCccccC-CCCC-CCCCEEEecCCC
Q 011891 96 LGDCKNLKTL-PSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKLP-FDGL-YSLTYLYLTDCA 171 (475)
Q Consensus 96 L~~c~~l~~l-p~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~-~~~l-~~L~~L~L~~~~ 171 (475)
+.+++.+..+ |..+..+++|++|++++|.++.+|. .+....++..|++.++..+..++.. +.++ ..++.|++++|+
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 6666677777 4567899999999999999998876 3456678889999888878777653 3444 468999999999
Q ss_pred CCCcchhhCCCCCCceeEecc-CCccccch-HHhhcCCcccccccccccccccCC-CccCcceecccccccCccccC
Q 011891 172 ITELPESLGLLSSLEELYLER-NNFERIPE-SIIRLSKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCTTLESLSG 245 (475)
Q Consensus 172 l~~lp~~l~~l~~L~~L~L~~-n~l~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~-l~~~L~~L~i~~c~~L~~l~~ 245 (475)
++++|.......+|+.|++.+ |.++.+|. .++.+++|+.|++++| .++.+|. ...+|+.|.+.++..|+.++.
T Consensus 166 i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 166 IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCC
T ss_pred ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCC
Confidence 999988888888999999985 67889985 5689999999999998 6888875 578899999999999998885
No 81
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=7.3e-18 Score=163.23 Aligned_cols=170 Identities=27% Similarity=0.375 Sum_probs=137.1
Q ss_pred ccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEE
Q 011891 39 IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEI 118 (475)
Q Consensus 39 ~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L 118 (475)
...+++|+.|++++| .+..++.+..+++|++|++++|.++.++. +..+++|++|++++|. +..+|. +..+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEE
T ss_pred hhhcCcccEEEccCC-CcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEE
Confidence 445677888888885 56777777788888888888888887776 7888888888888864 555554 7888888888
Q ss_pred EeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcccc
Q 011891 119 CLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERI 198 (475)
Q Consensus 119 ~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~l 198 (475)
++++|.++.+ +.+..+++|+.|++++|.. ..+ ..+..+++|+.|++++|.+++++. +..+++|+.|++++|.++.+
T Consensus 118 ~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 118 SLEHNGISDI-NGLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp ECTTSCCCCC-GGGGGCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred ECCCCcCCCC-hhhcCCCCCCEEEccCCcC-Ccc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC
Confidence 8888888876 4577888888998888864 334 356788899999999999998766 88899999999999999888
Q ss_pred chHHhhcCCcccccccccc
Q 011891 199 PESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 199 p~~i~~l~~L~~L~l~~c~ 217 (475)
+. +..+++|+.|++++|+
T Consensus 194 ~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 194 RA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp GG-GTTCTTCSEEEEEEEE
T ss_pred hh-hccCCCCCEEECcCCc
Confidence 74 8889999999999885
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=2.5e-17 Score=155.74 Aligned_cols=173 Identities=21% Similarity=0.303 Sum_probs=107.6
Q ss_pred CCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCcccCc-ccCCCCCCcE
Q 011891 17 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLE 93 (475)
Q Consensus 17 ~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~ 93 (475)
...+.+++++ ..++.+|. .+. +.|+.|+|++|. +..++. +..+++|++|+|++|.++.++. .+..+++|++
T Consensus 14 ~~~~~l~~~~-~~l~~~p~--~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 14 EGKKEVDCQG-KSLDSVPS--GIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GGGTEEECTT-CCCSSCCS--CCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCeEEecCC-CCccccCC--CCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence 4566777776 45666664 222 567777777754 444432 6677777777777777776544 3566777777
Q ss_pred EeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCCCCCcccc-CCCCCCCCCEEEecCCC
Q 011891 94 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCA 171 (475)
Q Consensus 94 L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~-~~~~l~~L~~L~L~~~~ 171 (475)
|++++|......+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.. ..++. .+.++++|+.|+|++|.
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCCCc
Confidence 77777554333334456677777777777777766654 45666677777766653 33333 45566666666666666
Q ss_pred CCCcch-hhCCCCCCceeEeccCCcc
Q 011891 172 ITELPE-SLGLLSSLEELYLERNNFE 196 (475)
Q Consensus 172 l~~lp~-~l~~l~~L~~L~L~~n~l~ 196 (475)
++.++. .+..+++|+.|++++|++.
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCccCHHHHhCCCCCCEEEeeCCcee
Confidence 666443 4556666666666666664
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=1e-19 Score=179.40 Aligned_cols=215 Identities=18% Similarity=0.205 Sum_probs=133.9
Q ss_pred CCcEEeccCCCCccCCCChhhccCC--CCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc--cCcccCCCCCCcE
Q 011891 18 KLNQIIMAACNIFTKTPNPSLIQHL--NKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE--LPSSIGCLSRLLE 93 (475)
Q Consensus 18 ~L~~L~Ls~~~~l~~~p~~~~~~~l--~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~ 93 (475)
.++.++++++.. . ...+..+ +.++.|+++++..-...+.+..+++|++|++++|.+.. ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~-~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNL-H----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBC-C----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccC-C----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 366777776432 1 1234444 66777777775443344445667777777777776652 5666677777777
Q ss_pred EeeeCCCCCCccccccCCCCCCcEEEeeCc-CCc--cCCcccCCCCCcCEEEcCCCCCCCc--cccCCCCCC-CCCEEEe
Q 011891 94 LNLGDCKNLKTLPSSLCKLKSLEEICLTGS-AIE--ELPSPIECLSALCVLDLGDCKSLKS--LKLPFDGLY-SLTYLYL 167 (475)
Q Consensus 94 L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~-~i~--~lp~~i~~l~~L~~L~L~~c~~l~~--l~~~~~~l~-~L~~L~L 167 (475)
|++++|......+..++.+++|++|++++| .++ .++..+..+++|++|++++|..+.. ++..+..++ +|+.|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 777777544456666677777777777777 555 3555566677777777777743442 343445666 7777777
Q ss_pred cCC--CCCC--cchhhCCCCCCceeEeccCC-cc-ccchHHhhcCCccccccccccccccc--CC--CccCcceeccccc
Q 011891 168 TDC--AITE--LPESLGLLSSLEELYLERNN-FE-RIPESIIRLSKLSSLLVSYCERLQSL--PK--LPCNLYWLDAQHC 237 (475)
Q Consensus 168 ~~~--~l~~--lp~~l~~l~~L~~L~L~~n~-l~-~lp~~i~~l~~L~~L~l~~c~~l~~l--p~--l~~~L~~L~i~~c 237 (475)
++| .+++ +|..+..+++|+.|++++|. ++ ..+..+..+++|+.|++++|..+..- .. -.++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 777 4442 56666667777777777777 43 44556677777777777777532211 01 1356777777766
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.5e-17 Score=159.50 Aligned_cols=175 Identities=26% Similarity=0.354 Sum_probs=151.8
Q ss_pred ccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCc
Q 011891 13 VQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLL 92 (475)
Q Consensus 13 ~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 92 (475)
...+++|+.|++++| .++.++ .+..+++|++|++++| .+..++.+..+++|++|++++|.++.++. +..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~~---~~~~l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSVQ---GIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCCT---TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCC
T ss_pred hhhcCcccEEEccCC-CcccCh---hHhcCCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCC
Confidence 457899999999996 456665 3778999999999996 57777779999999999999999998765 88999999
Q ss_pred EEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCC
Q 011891 93 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAI 172 (475)
Q Consensus 93 ~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l 172 (475)
+|++++|. +..++ .+..+++|++|++++|.++.+ ..+..+++|+.|++++|.. ..++. +..+++|+.|++++|.+
T Consensus 116 ~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l-~~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 116 SLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcc-ccchh-hcCCCccCEEECCCCcC
Confidence 99999975 55564 688999999999999999988 6788999999999999974 44443 78899999999999999
Q ss_pred CCcchhhCCCCCCceeEeccCCccccc
Q 011891 173 TELPESLGLLSSLEELYLERNNFERIP 199 (475)
Q Consensus 173 ~~lp~~l~~l~~L~~L~L~~n~l~~lp 199 (475)
++++. +..+++|+.|++++|+++..|
T Consensus 191 ~~l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 191 SDLRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred CCChh-hccCCCCCEEECcCCcccCCc
Confidence 99875 899999999999999987655
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=1.2e-19 Score=182.74 Aligned_cols=233 Identities=18% Similarity=0.177 Sum_probs=174.7
Q ss_pred CcccccccccCCCCCcEEeccCCCCccCCCC--hhhccCCCCCcEEEEeCCC--CCC-CCcC-c-------CCCCCCcEE
Q 011891 5 NIEQLSESVQHHGKLNQIIMAACNIFTKTPN--PSLIQHLNKLVILNLSGCS--KLK-SLPE-I-------SSAGNIEKI 71 (475)
Q Consensus 5 ~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~--~~~~~~l~~L~~L~L~~c~--~l~-~~p~-i-------~~l~~L~~L 71 (475)
.++.+...+..+++|++|+|++|..-...+. ...+.++++|++|+|++|. .+. .+|. + ..+++|++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 4556777888999999999999743222111 1236689999999999973 222 2343 3 688999999
Q ss_pred EccccCCcc-----cCcccCCCCCCcEEeeeCCCCCC----ccccccCCC---------CCCcEEEeeCcCCc--cCC--
Q 011891 72 LLDGTAIEE-----LPSSIGCLSRLLELNLGDCKNLK----TLPSSLCKL---------KSLEEICLTGSAIE--ELP-- 129 (475)
Q Consensus 72 ~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~----~lp~~l~~l---------~~L~~L~l~~~~i~--~lp-- 129 (475)
+|++|.+.. ++..+..+++|++|+|++|.... .++..+..+ ++|++|++++|.++ .++
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 999999885 77788899999999999987532 233334444 89999999999987 444
Q ss_pred -cccCCCCCcCEEEcCCCCCCC-----ccccCCCCCCCCCEEEecCCCCC-----CcchhhCCCCCCceeEeccCCccc-
Q 011891 130 -SPIECLSALCVLDLGDCKSLK-----SLKLPFDGLYSLTYLYLTDCAIT-----ELPESLGLLSSLEELYLERNNFER- 197 (475)
Q Consensus 130 -~~i~~l~~L~~L~L~~c~~l~-----~l~~~~~~l~~L~~L~L~~~~l~-----~lp~~l~~l~~L~~L~L~~n~l~~- 197 (475)
..+..+++|+.|++++|.... ..+..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.++.
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 456788899999999997432 23335678899999999999995 378888999999999999999864
Q ss_pred ----cchHHhh--cCCccccccccccccc----ccCCC----ccCcceeccccc
Q 011891 198 ----IPESIIR--LSKLSSLLVSYCERLQ----SLPKL----PCNLYWLDAQHC 237 (475)
Q Consensus 198 ----lp~~i~~--l~~L~~L~l~~c~~l~----~lp~l----~~~L~~L~i~~c 237 (475)
++..+.. +++|+.|+|++|..-. .+|.. .++|+.|++++|
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 4666644 8999999999986433 25532 366777777665
No 86
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=5.5e-17 Score=170.67 Aligned_cols=181 Identities=19% Similarity=0.282 Sum_probs=151.5
Q ss_pred CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEeee
Q 011891 18 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLG 97 (475)
Q Consensus 18 ~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 97 (475)
+|+.|+|+++ .++.+|. .+ +++|++|+|++| .+..+| ..+++|++|++++|.++.+|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~--~l--~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPD--NL--PPQITVLEITQN-ALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSS-CCSCCCS--CC--CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCC-CCCccCH--hH--cCCCCEEECcCC-CCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 8999999986 5677775 22 378999999995 577888 668999999999999999988 655 99999999
Q ss_pred CCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcch
Q 011891 98 DCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE 177 (475)
Q Consensus 98 ~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~ 177 (475)
+|. ++.+|. .+++|+.|++++|.++.+|. .+++|+.|++++|. +..+|. +. ++|+.|+|++|+++.+|.
T Consensus 129 ~N~-l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 129 NNQ-LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp SSC-CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred CCc-CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCCCCchhh
Confidence 975 556887 68999999999999999887 57899999999997 455776 54 899999999999999988
Q ss_pred hhCCCCCC-------ceeEeccCCccccchHHhhcCCcccccccccccccccC
Q 011891 178 SLGLLSSL-------EELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLP 223 (475)
Q Consensus 178 ~l~~l~~L-------~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp 223 (475)
+.. +| +.|+|++|+|+.+|..+..+++|+.|++++|+.-..+|
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp -CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred -HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 544 77 99999999999999989899999999999997544433
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=8.4e-19 Score=172.88 Aligned_cols=231 Identities=18% Similarity=0.204 Sum_probs=173.5
Q ss_pred ccccCC--CCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCC-CcC-cCCCCCCcEEEccccCCc-ccCccc
Q 011891 11 ESVQHH--GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKS-LPE-ISSAGNIEKILLDGTAIE-ELPSSI 85 (475)
Q Consensus 11 ~~~~~l--~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~-~p~-i~~l~~L~~L~L~~~~i~-~lp~~i 85 (475)
..+..+ ++++.|+++++.. ...+. .+..+++|++|++++|..... +|. +..+++|++|++++|.+. ..+..+
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l-~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l 138 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFM-DQPLA--EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL 138 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEE-CSCCC--SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH
T ss_pred HHHHhhhhccceEEEcCCccc-cccch--hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH
Confidence 344455 8999999998654 43332 256789999999999863223 565 778999999999999887 567788
Q ss_pred CCCCCCcEEeeeCCCCCC--ccccccCCCCCCcEEEeeCc-CCcc--CCcccCCCC-CcCEEEcCCCC-CC--CccccCC
Q 011891 86 GCLSRLLELNLGDCKNLK--TLPSSLCKLKSLEEICLTGS-AIEE--LPSPIECLS-ALCVLDLGDCK-SL--KSLKLPF 156 (475)
Q Consensus 86 ~~l~~L~~L~L~~c~~l~--~lp~~l~~l~~L~~L~l~~~-~i~~--lp~~i~~l~-~L~~L~L~~c~-~l--~~l~~~~ 156 (475)
..+++|++|++++|..++ .++..+..+++|++|++++| .++. ++..+..++ +|++|++++|. .+ ..++..+
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~ 218 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence 889999999999996666 37777888999999999999 8884 677788889 99999999995 23 3345555
Q ss_pred CCCCCCCEEEecCCC-CCC-cchhhCCCCCCceeEeccCC-cc-ccchHHhhcCCcccccccccccccccCCCccCccee
Q 011891 157 DGLYSLTYLYLTDCA-ITE-LPESLGLLSSLEELYLERNN-FE-RIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWL 232 (475)
Q Consensus 157 ~~l~~L~~L~L~~~~-l~~-lp~~l~~l~~L~~L~L~~n~-l~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~l~~~L~~L 232 (475)
..+++|+.|++++|. +++ .+..+..+++|+.|++++|. +. .....+..+++|+.|++++|-.-..+..+...+..|
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L 298 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 298 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS
T ss_pred hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHHhhCcce
Confidence 678999999999998 664 66788899999999999995 32 111357889999999999981111222233457777
Q ss_pred cccccccCccccC
Q 011891 233 DAQHCTTLESLSG 245 (475)
Q Consensus 233 ~i~~c~~L~~l~~ 245 (475)
+++ |..++....
T Consensus 299 ~l~-~n~l~~~~~ 310 (336)
T 2ast_B 299 QIN-CSHFTTIAR 310 (336)
T ss_dssp EES-CCCSCCTTC
T ss_pred EEe-cccCccccC
Confidence 774 455655444
No 88
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=2.2e-17 Score=150.29 Aligned_cols=149 Identities=17% Similarity=0.262 Sum_probs=88.0
Q ss_pred CCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCcc-CCcccCCCCCcCEEE
Q 011891 64 SAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE-LPSPIECLSALCVLD 142 (475)
Q Consensus 64 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~ 142 (475)
.+++|++|++++|.++.+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.++. .+..+..+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4455566666666655555 4555666666666665 333333 45556666666666666653 455556666666666
Q ss_pred cCCCCCCCccccCCCCCCCCCEEEecCCC-CCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccc
Q 011891 143 LGDCKSLKSLKLPFDGLYSLTYLYLTDCA-ITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 143 L~~c~~l~~l~~~~~~l~~L~~L~L~~~~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~ 217 (475)
+++|......+..+..+++|+.|++++|. ++++| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 66665443344445566666666666665 55555 4566666666666666666655 55666666666666653
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=1.5e-16 Score=150.46 Aligned_cols=171 Identities=26% Similarity=0.346 Sum_probs=145.6
Q ss_pred CCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCc-ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEe
Q 011891 43 NKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICL 120 (475)
Q Consensus 43 ~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l 120 (475)
...+++++++ ..+..+|. +. ++|+.|+|++|.+..++. .+.++++|++|++++|......|..+..+++|++|++
T Consensus 14 ~~~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTT-CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCC-CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4567899988 57888887 44 689999999999997765 6889999999999998665555666889999999999
Q ss_pred eCcCCccCCc-ccCCCCCcCEEEcCCCCCCCcccc-CCCCCCCCCEEEecCCCCCCcch-hhCCCCCCceeEeccCCccc
Q 011891 121 TGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFER 197 (475)
Q Consensus 121 ~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~-~~~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~ 197 (475)
++|.++.+|. .+..+++|++|++++|... .++. .+.++++|+.|+|++|+++++|. .++.+++|+.|+|++|+++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 9999998875 4688999999999999744 4544 45889999999999999999776 68899999999999999998
Q ss_pred cch-HHhhcCCcccccccccc
Q 011891 198 IPE-SIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 198 lp~-~i~~l~~L~~L~l~~c~ 217 (475)
++. .+..+++|+.|++++|+
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCC
T ss_pred cCHHHHhCCCCCCEEEeeCCc
Confidence 874 68889999999999985
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=7.9e-18 Score=164.38 Aligned_cols=200 Identities=19% Similarity=0.196 Sum_probs=136.3
Q ss_pred CCCcEEEEeCCCCCCC----CcCcCCCCCCcEEEccccCCc-ccCccc--CCCCCCcEEeeeCCCCCCccc----cccCC
Q 011891 43 NKLVILNLSGCSKLKS----LPEISSAGNIEKILLDGTAIE-ELPSSI--GCLSRLLELNLGDCKNLKTLP----SSLCK 111 (475)
Q Consensus 43 ~~L~~L~L~~c~~l~~----~p~i~~l~~L~~L~L~~~~i~-~lp~~i--~~l~~L~~L~L~~c~~l~~lp----~~l~~ 111 (475)
..++.|.+.++..-.. +.....+++|++|++++|.+. ..|..+ ..+++|++|++++|......+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3467777777532110 111223466888888888877 455555 778888888888876554433 23456
Q ss_pred CCCCcEEEeeCcCCccCC-cccCCCCCcCEEEcCCCCCCCc--cc--cCCCCCCCCCEEEecCCCCCCcchh----hCCC
Q 011891 112 LKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSLKS--LK--LPFDGLYSLTYLYLTDCAITELPES----LGLL 182 (475)
Q Consensus 112 l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~--l~--~~~~~l~~L~~L~L~~~~l~~lp~~----l~~l 182 (475)
+++|++|++++|.+..++ ..+..+++|++|++++|..... ++ ..+..+++|+.|++++|+++.++.. ++.+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 788888888888888665 4677888888888888875432 22 2235778888888888888765542 4677
Q ss_pred CCCceeEeccCCcccc-chHHhhc---CCcccccccccccccccCC-CccCcceecccccccCcccc
Q 011891 183 SSLEELYLERNNFERI-PESIIRL---SKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCTTLESLS 244 (475)
Q Consensus 183 ~~L~~L~L~~n~l~~l-p~~i~~l---~~L~~L~l~~c~~l~~lp~-l~~~L~~L~i~~c~~L~~l~ 244 (475)
++|++|+|++|+++.+ |..+..+ ++|++|++++|. ++.+|. ++++|+.|+++++ .++.++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N-~l~~~~ 288 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSN-RLNRAP 288 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSC-CCCSCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCC-cCCCCc
Confidence 8888888888888765 6666665 588888888874 446664 5678888888776 355443
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=6.8e-19 Score=177.28 Aligned_cols=210 Identities=19% Similarity=0.205 Sum_probs=164.5
Q ss_pred ccccccCCCCCcEEeccCCC--Ccc-CCCC-----hhhccCCCCCcEEEEeCCCCCC----CCcC-cCCCCCCcEEEccc
Q 011891 9 LSESVQHHGKLNQIIMAACN--IFT-KTPN-----PSLIQHLNKLVILNLSGCSKLK----SLPE-ISSAGNIEKILLDG 75 (475)
Q Consensus 9 L~~~~~~l~~L~~L~Ls~~~--~l~-~~p~-----~~~~~~l~~L~~L~L~~c~~l~----~~p~-i~~l~~L~~L~L~~ 75 (475)
+...+..+++|++|+|++|. .++ .+|. ...+.++++|++|+|++|..-. .+|. +..+++|++|+|++
T Consensus 52 l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 131 (386)
T 2ca6_A 52 LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN 131 (386)
T ss_dssp HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcC
Confidence 44557789999999999973 232 2231 0123688999999999975443 2554 67899999999999
Q ss_pred cCCcc-----cCcccCCC---------CCCcEEeeeCCCCC-Cccc---cccCCCCCCcEEEeeCcCCc------cCCcc
Q 011891 76 TAIEE-----LPSSIGCL---------SRLLELNLGDCKNL-KTLP---SSLCKLKSLEEICLTGSAIE------ELPSP 131 (475)
Q Consensus 76 ~~i~~-----lp~~i~~l---------~~L~~L~L~~c~~l-~~lp---~~l~~l~~L~~L~l~~~~i~------~lp~~ 131 (475)
|.+.. ++..+..+ ++|++|++++|... ..+| ..+..+++|++|++++|.++ -++..
T Consensus 132 n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~ 211 (386)
T 2ca6_A 132 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211 (386)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH
Confidence 99862 33444445 89999999998754 3444 46778899999999999998 23447
Q ss_pred cCCCCCcCEEEcCCCCCC----CccccCCCCCCCCCEEEecCCCCCC-----cchhh--CCCCCCceeEeccCCccc---
Q 011891 132 IECLSALCVLDLGDCKSL----KSLKLPFDGLYSLTYLYLTDCAITE-----LPESL--GLLSSLEELYLERNNFER--- 197 (475)
Q Consensus 132 i~~l~~L~~L~L~~c~~l----~~l~~~~~~l~~L~~L~L~~~~l~~-----lp~~l--~~l~~L~~L~L~~n~l~~--- 197 (475)
+..+++|+.|++++|... ..++..+..+++|+.|+|++|.+++ ++..+ +.+++|+.|+|++|.++.
T Consensus 212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~ 291 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291 (386)
T ss_dssp GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH
Confidence 889999999999999852 5566667889999999999999987 46666 449999999999999986
Q ss_pred --cchHH-hhcCCccccccccccc
Q 011891 198 --IPESI-IRLSKLSSLLVSYCER 218 (475)
Q Consensus 198 --lp~~i-~~l~~L~~L~l~~c~~ 218 (475)
+|..+ .++++|+.|++++|+.
T Consensus 292 ~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 292 RTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHHHHHhcCCCceEEEccCCcC
Confidence 88877 6689999999999863
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=1.7e-16 Score=167.03 Aligned_cols=182 Identities=22% Similarity=0.335 Sum_probs=152.8
Q ss_pred CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891 1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE 80 (475)
Q Consensus 1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~ 80 (475)
|++++|..+|.++ +++|++|+|++| .++.+| ..+++|++|+|++| .+..+|.+.. +|++|++++|.++.
T Consensus 66 Ls~n~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N-~l~~ip~l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 66 LNRLNLSSLPDNL--PPQITVLEITQN-ALISLP-----ELPASLEYLDACDN-RLSTLPELPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp CCSSCCSCCCSCC--CTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCCCCT--TCCEEECCSSCCSC
T ss_pred eCCCCCCccCHhH--cCCCCEEECcCC-CCcccc-----cccCCCCEEEccCC-CCCCcchhhc--CCCEEECCCCcCCC
Confidence 4678888888876 489999999996 566777 34789999999996 5677888444 99999999999999
Q ss_pred cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCC
Q 011891 81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLY 160 (475)
Q Consensus 81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~ 160 (475)
+|. .+++|++|++++|. ++.+|. .+++|++|++++|.++.+|. +. ++|+.|++++|. +..+|. +..
T Consensus 135 lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~-~~~-- 200 (571)
T 3cvr_A 135 LPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA-VPV-- 200 (571)
T ss_dssp CCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC-CC---
T ss_pred CCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh-HHH--
Confidence 988 68999999999975 566886 57899999999999999998 65 999999999996 557776 543
Q ss_pred CC-------CEEEecCCCCCCcchhhCCCCCCceeEeccCCcc-ccchHHhhcCC
Q 011891 161 SL-------TYLYLTDCAITELPESLGLLSSLEELYLERNNFE-RIPESIIRLSK 207 (475)
Q Consensus 161 ~L-------~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~ 207 (475)
+| +.|+|++|.++.+|..+..+++|+.|+|++|+++ .+|..+..+..
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp -------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 67 9999999999999999999999999999999996 66777766543
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=6.8e-17 Score=171.58 Aligned_cols=174 Identities=26% Similarity=0.372 Sum_probs=99.9
Q ss_pred cCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcE
Q 011891 14 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLE 93 (475)
Q Consensus 14 ~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 93 (475)
..+++|+.|++++|. +..++ .+..+++|+.|+|++| .+..++.+..+++|+.|+|++|.+..++ .+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~-i~~l~---~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKSVQ---GIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCCCT---TGGGCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCC-CCCCh---HHccCCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 455666666666543 34443 2455666666666664 3445555666666666666666666554 4556666666
Q ss_pred EeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCC
Q 011891 94 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT 173 (475)
Q Consensus 94 L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~ 173 (475)
|+|++|. +..++ .+..+++|+.|++++|.++.+ ..+..+++|+.|+|++|......| +..+++|+.|+|++|.++
T Consensus 114 L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 114 LSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEecCCC-CCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 6666653 33333 355666666666666666655 455566666666666655332222 455666666666666666
Q ss_pred CcchhhCCCCCCceeEeccCCccccc
Q 011891 174 ELPESLGLLSSLEELYLERNNFERIP 199 (475)
Q Consensus 174 ~lp~~l~~l~~L~~L~L~~n~l~~lp 199 (475)
+++ .+..+++|+.|+|++|++...|
T Consensus 189 ~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 189 DLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp BCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred CCh-HHccCCCCCEEEccCCcCcCCc
Confidence 653 3555666666666666655443
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=5.7e-17 Score=147.53 Aligned_cols=153 Identities=20% Similarity=0.264 Sum_probs=132.9
Q ss_pred cCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEE
Q 011891 40 QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEIC 119 (475)
Q Consensus 40 ~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~ 119 (475)
..+++|+.|++++| .+..+|.+..+++|++|++++|.++.++ .+..+++|++|++++|......|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCC-CccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 56788999999995 6778888889999999999999887665 688899999999999876666788899999999999
Q ss_pred eeCcCCcc-CCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcc
Q 011891 120 LTGSAIEE-LPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE 196 (475)
Q Consensus 120 l~~~~i~~-lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~ 196 (475)
+++|.++. .|..+..+++|++|++++|..+..++ .+..+++|+.|++++|.+++++ .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 99999985 67788999999999999998677777 6788999999999999999987 7888999999999999875
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=8.9e-17 Score=170.67 Aligned_cols=189 Identities=25% Similarity=0.315 Sum_probs=159.1
Q ss_pred CCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEee
Q 011891 17 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 96 (475)
Q Consensus 17 ~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 96 (475)
.++..+.+... .+..+. .+..+++|+.|++++| .+..+|.+..+++|+.|+|++|.+..++. +..+++|+.|+|
T Consensus 21 ~~l~~l~l~~~-~i~~~~---~~~~L~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKK-SVTDAV---TQNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCS-CTTSEE---CHHHHTTCCCCBCTTC-CCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEEC
T ss_pred HHHHHHhccCC-Cccccc---chhcCCCCCEEECcCC-CCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEEC
Confidence 34444555553 333333 3567788999999995 57888889999999999999999998887 889999999999
Q ss_pred eCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcc
Q 011891 97 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP 176 (475)
Q Consensus 97 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp 176 (475)
++|. +..+| .+..+++|+.|++++|.+..++ .+..+++|+.|+|++|.. ..+ ..+..+++|+.|+|++|.+.+++
T Consensus 95 s~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l-~~l-~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 95 DENK-IKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp CSSC-CCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCC-CCC-GGGGSCTTCSEEECCSSCCCCCG
T ss_pred cCCC-CCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCcc-CCc-hhhcccCCCCEEECcCCcCCCch
Confidence 9974 56666 6899999999999999999874 588899999999999974 444 45678999999999999999976
Q ss_pred hhhCCCCCCceeEeccCCccccchHHhhcCCccccccccccc
Q 011891 177 ESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCER 218 (475)
Q Consensus 177 ~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~ 218 (475)
. +..+++|+.|+|++|+++.+| .+..+++|+.|+|++|+.
T Consensus 170 ~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 170 P-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp G-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred h-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence 6 899999999999999999886 688999999999999864
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=4.3e-17 Score=155.39 Aligned_cols=146 Identities=22% Similarity=0.298 Sum_probs=77.1
Q ss_pred cCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEE
Q 011891 40 QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEIC 119 (475)
Q Consensus 40 ~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~ 119 (475)
..+++|++|++++| .+..+|.+..+++|++|++++|.++.++. +..+++|++|+++
T Consensus 38 ~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~---------------------- 93 (263)
T 1xeu_A 38 KELSGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN---------------------- 93 (263)
T ss_dssp HHHTTCSEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC----------------------
T ss_pred hhcCcCcEEECcCC-CcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC----------------------
Confidence 34455555555553 34444444455555555555555554444 4444445555554
Q ss_pred eeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccc
Q 011891 120 LTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP 199 (475)
Q Consensus 120 l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp 199 (475)
+|.++.+|.... ++|+.|++++|. +..++ .+..+++|+.|++++|++++++ .+..+++|+.|++++|+++.+
T Consensus 94 --~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 --RNRLKNLNGIPS--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp --SSCCSCCTTCCC--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred --CCccCCcCcccc--CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-
Confidence 444444433222 445555555543 22232 2445566666666666666654 455666666666666666655
Q ss_pred hHHhhcCCcccccccccc
Q 011891 200 ESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 200 ~~i~~l~~L~~L~l~~c~ 217 (475)
..+..+++|+.|++++|+
T Consensus 166 ~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTSTTCCCCCEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCc
Confidence 345566666666666653
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=3e-15 Score=137.18 Aligned_cols=151 Identities=24% Similarity=0.330 Sum_probs=83.2
Q ss_pred CCcEEEccccCCcccCcc-cCCCCCCcEEeeeCCCCCCcccc-ccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEc
Q 011891 67 NIEKILLDGTAIEELPSS-IGCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDL 143 (475)
Q Consensus 67 ~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L 143 (475)
+|++|++++|.++.++.. +..+++|++|++++|. ++.+|. .+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 444555555544444432 3445555555555532 223332 234555555555555555555443 355556666666
Q ss_pred CCCCCCCccccCCCCCCCCCEEEecCCCCCCcchh-hCCCCCCceeEeccCCccccchHHhhcCCccccccccccccccc
Q 011891 144 GDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL 222 (475)
Q Consensus 144 ~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~l 222 (475)
++|......+..+..+++|+.|++++|.+++++.. +..+++|+.|++++|.+. ..+++|+.|+++.+.....+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTB
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCcee
Confidence 65543222222345666777777777777765543 566777777777777654 23456777777776655555
Q ss_pred CC
Q 011891 223 PK 224 (475)
Q Consensus 223 p~ 224 (475)
|.
T Consensus 182 p~ 183 (208)
T 2o6s_A 182 RN 183 (208)
T ss_dssp BC
T ss_pred ec
Confidence 54
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=1.3e-17 Score=166.59 Aligned_cols=215 Identities=16% Similarity=0.135 Sum_probs=154.1
Q ss_pred CCCCCccccccc-ccCCCCCcEEeccCCCCccCCCC---hhhccCCC-CCcEEEEeCCCCCCCC-cC-cCCC-----CCC
Q 011891 1 MPHSNIEQLSES-VQHHGKLNQIIMAACNIFTKTPN---PSLIQHLN-KLVILNLSGCSKLKSL-PE-ISSA-----GNI 68 (475)
Q Consensus 1 l~~s~l~~L~~~-~~~l~~L~~L~Ls~~~~l~~~p~---~~~~~~l~-~L~~L~L~~c~~l~~~-p~-i~~l-----~~L 68 (475)
|+++++..+... +...++|++|+|++|. ++..+. ...+.+++ +|++|+|++|. +... +. +..+ ++|
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTC
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCc
Confidence 456777755444 4455569999999976 555542 13566788 89999999974 4443 33 4432 899
Q ss_pred cEEEccccCCcccCcc-----cCCC-CCCcEEeeeCCCCCCccccc----cCC-CCCCcEEEeeCcCCc-----cCCccc
Q 011891 69 EKILLDGTAIEELPSS-----IGCL-SRLLELNLGDCKNLKTLPSS----LCK-LKSLEEICLTGSAIE-----ELPSPI 132 (475)
Q Consensus 69 ~~L~L~~~~i~~lp~~-----i~~l-~~L~~L~L~~c~~l~~lp~~----l~~-l~~L~~L~l~~~~i~-----~lp~~i 132 (475)
++|+|++|.++..+.. +..+ ++|++|++++|......+.. +.. .++|++|++++|.++ .++..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 9999999998855432 4555 89999999998743333322 344 369999999999988 344455
Q ss_pred CCCC-CcCEEEcCCCCCCCccccC----CCCC-CCCCEEEecCCCCCC-----cchhhCC-CCCCceeEeccCCccccc-
Q 011891 133 ECLS-ALCVLDLGDCKSLKSLKLP----FDGL-YSLTYLYLTDCAITE-----LPESLGL-LSSLEELYLERNNFERIP- 199 (475)
Q Consensus 133 ~~l~-~L~~L~L~~c~~l~~l~~~----~~~l-~~L~~L~L~~~~l~~-----lp~~l~~-l~~L~~L~L~~n~l~~lp- 199 (475)
..+. +|++|++++|......+.. +..+ ++|+.|+|++|.+++ ++..+.. .++|+.|+|++|.++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 5555 9999999999743333222 2344 589999999999988 6666665 469999999999997554
Q ss_pred ----hHHhhcCCcccccccccc
Q 011891 200 ----ESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 200 ----~~i~~l~~L~~L~l~~c~ 217 (475)
..+..+++|+.|++++|.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHhcCCCccEEEeccCC
Confidence 234667899999999986
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=1.9e-16 Score=151.01 Aligned_cols=162 Identities=19% Similarity=0.210 Sum_probs=120.9
Q ss_pred CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCccc
Q 011891 2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEEL 81 (475)
Q Consensus 2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~l 81 (475)
.+++++.++ .+..+++|++|++++| .++.++ .+..+++|++|+|++| .+..++.+..+++|++|++++|.++.+
T Consensus 27 ~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~L~~N~l~~l 100 (263)
T 1xeu_A 27 GKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA---GMQFFTNLKELHLSHN-QISDLSPLKDLTKLEELSVNRNRLKNL 100 (263)
T ss_dssp TCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT---TGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSCCSCC
T ss_pred cCCCccccc-chhhcCcCcEEECcCC-Ccccch---HHhhCCCCCEEECCCC-ccCCChhhccCCCCCEEECCCCccCCc
Confidence 467778776 6789999999999997 566766 4778999999999995 677888899999999999999999988
Q ss_pred CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCC
Q 011891 82 PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYS 161 (475)
Q Consensus 82 p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~ 161 (475)
|.... ++|++|++++|. ++.++ .+..+++|++|++++|.++.++ . +..+++
T Consensus 101 ~~~~~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~------------------------l~~l~~ 151 (263)
T 1xeu_A 101 NGIPS--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKSIV-M------------------------LGFLSK 151 (263)
T ss_dssp TTCCC--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCBCG-G------------------------GGGCTT
T ss_pred Ccccc--CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCCCCh-H------------------------HccCCC
Confidence 76433 777777777753 44444 4666667777776666655543 2 344566
Q ss_pred CCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccc
Q 011891 162 LTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP 199 (475)
Q Consensus 162 L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp 199 (475)
|+.|++++|.++++ ..+..+++|+.|++++|.+...|
T Consensus 152 L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 152 LEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence 66666666666666 45677788888888888776554
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=2.1e-15 Score=150.50 Aligned_cols=169 Identities=21% Similarity=0.264 Sum_probs=115.8
Q ss_pred cEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCcc-cC-CCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeC
Q 011891 46 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSS-IG-CLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG 122 (475)
Q Consensus 46 ~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~~-i~-~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~ 122 (475)
+.+++++ ..+..+|. +. +.++.|+|++|.|+.++.. +. .+++|++|+|++|......+..+..+++|++|++++
T Consensus 21 ~~l~c~~-~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCS-SCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCC-CCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4566666 45666665 32 4577777777777766654 33 677777777777543333334577777888888888
Q ss_pred cCCccCCc-ccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhh----CCCCCCceeEeccCCccc
Q 011891 123 SAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESL----GLLSSLEELYLERNNFER 197 (475)
Q Consensus 123 ~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l----~~l~~L~~L~L~~n~l~~ 197 (475)
|.++.++. .+..+++|+.|+|++|......+..+.++++|+.|+|++|.++.+|..+ ..+++|+.|+|++|+|+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 87776655 4677778888888877755444566777888888888888888877654 567888888888888887
Q ss_pred cc-hHHhhcCC--cccccccccc
Q 011891 198 IP-ESIIRLSK--LSSLLVSYCE 217 (475)
Q Consensus 198 lp-~~i~~l~~--L~~L~l~~c~ 217 (475)
+| ..+..++. |+.|++++|+
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSC
T ss_pred cCHHHhhhccHhhcceEEecCCC
Confidence 77 45666665 3666776653
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=4.4e-15 Score=136.04 Aligned_cols=174 Identities=25% Similarity=0.324 Sum_probs=126.3
Q ss_pred cEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCcccCcc-cCCCCCCcEEee
Q 011891 20 NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELNL 96 (475)
Q Consensus 20 ~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L 96 (475)
+.++.++ ..++.+|. ...++|++|++++| .+..++. +..+++|++|++++|.++.++.. +..+++|++|++
T Consensus 10 ~~v~c~~-~~l~~~p~----~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 10 TTVECYS-QGRTSVPT----GIPAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TEEECCS-SCCSSCCS----CCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEecC-CCccCCCC----CCCCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 4556665 34566663 22457888888885 4556655 56788888888888888877664 577888888888
Q ss_pred eCCCCCCcccc-ccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCCCCCcccc-CCCCCCCCCEEEecCCCCC
Q 011891 97 GDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAIT 173 (475)
Q Consensus 97 ~~c~~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~-~~~~l~~L~~L~L~~~~l~ 173 (475)
++|. +..+|. .+..+++|++|++++|.++.++.. +..+++|+.|++++|... .++. .+..+++|+.|++++|.+.
T Consensus 84 s~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 84 STNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCee
Confidence 8865 444443 467888888888888888877765 677888888888888644 4443 3677888999999988654
Q ss_pred CcchhhCCCCCCceeEeccCCcc-ccchHHhhcCC
Q 011891 174 ELPESLGLLSSLEELYLERNNFE-RIPESIIRLSK 207 (475)
Q Consensus 174 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~ 207 (475)
+.+++|+.|+++.|+++ .+|..++.++.
T Consensus 162 ------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 ------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 34678899999999886 78877765554
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=2.8e-15 Score=139.78 Aligned_cols=146 Identities=29% Similarity=0.374 Sum_probs=82.4
Q ss_pred cEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCccc-CcccCCCCCCcEEeeeCCCCCCcccc-ccCCCCCCcEEEeeC
Q 011891 46 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTG 122 (475)
Q Consensus 46 ~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~ 122 (475)
+.++.++ ..+..+|. +. ++|++|+|++|.+..+ |..+..+++|++|+|++|. +..+|. .+..+++|++|++++
T Consensus 22 ~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRS-KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccC-CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC
Confidence 4566655 45566665 32 5666666666666655 3455666666666666654 344442 345666666666666
Q ss_pred cCCccCCcc-cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcch-hhCCCCCCceeEeccCCcc
Q 011891 123 SAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFE 196 (475)
Q Consensus 123 ~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~n~l~ 196 (475)
|.++.++.. +..+++|+.|++++|. +..+|..+..+++|+.|+|++|+++.++. .+..+++|+.|++++|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 666655543 3555566666665554 33455555555555555555555555442 3455555555555555553
No 103
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=2.5e-17 Score=169.43 Aligned_cols=103 Identities=21% Similarity=0.177 Sum_probs=53.9
Q ss_pred CCcCEEEcCCCCCCCc----cccCCCCCCCCCEEEecCCCCCCc------chhhCCCCCCceeEeccCCccc-----cch
Q 011891 136 SALCVLDLGDCKSLKS----LKLPFDGLYSLTYLYLTDCAITEL------PESLGLLSSLEELYLERNNFER-----IPE 200 (475)
Q Consensus 136 ~~L~~L~L~~c~~l~~----l~~~~~~l~~L~~L~L~~~~l~~l------p~~l~~l~~L~~L~L~~n~l~~-----lp~ 200 (475)
++|++|++++|..... ++..+..+++|+.|++++|.+++. +.....+++|+.|++++|.++. ++.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 3555555555542221 222234456666666666665541 2222346666666666666654 555
Q ss_pred HHhhcCCccccccccccccc----cc----CCCccCcceecccccc
Q 011891 201 SIIRLSKLSSLLVSYCERLQ----SL----PKLPCNLYWLDAQHCT 238 (475)
Q Consensus 201 ~i~~l~~L~~L~l~~c~~l~----~l----p~l~~~L~~L~i~~c~ 238 (475)
.+..+++|+.|++++|..-. .+ ...+++|+.|++++|.
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 56666777777776664211 11 1122466666666664
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=6.5e-15 Score=136.40 Aligned_cols=148 Identities=25% Similarity=0.378 Sum_probs=112.4
Q ss_pred cEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCc-ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCc
Q 011891 46 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGS 123 (475)
Q Consensus 46 ~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~ 123 (475)
+.+++++ ..+..+|. +. ++|++|++++|.++.++. .+..+++|++|+|++|......|..+..+++|++|++++|
T Consensus 14 ~~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRG-KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTT-SCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCC-CCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4566666 45666765 33 678888888888887765 6777888888888887655445777888888888888888
Q ss_pred CCccCCcc-cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcch-hhCCCCCCceeEeccCCcc
Q 011891 124 AIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFE 196 (475)
Q Consensus 124 ~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~n~l~ 196 (475)
.++.+|.. +..+++|+.|++++|......+..+.++++|+.|+|++|.++.++. .+..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88888765 4678888888888887555555667788888888888888888654 4777888888888888875
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=1.2e-18 Score=183.91 Aligned_cols=193 Identities=20% Similarity=0.173 Sum_probs=114.1
Q ss_pred ccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCC-------------CCCCCcC-cCCCCCCcEEE-ccccC
Q 011891 13 VQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCS-------------KLKSLPE-ISSAGNIEKIL-LDGTA 77 (475)
Q Consensus 13 ~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~-------------~l~~~p~-i~~l~~L~~L~-L~~~~ 77 (475)
+..++.|+.|+|+++ .++.+| ..+++|++|+.|++++|. ..+..|. ++.+++|+.|+ ++.+.
T Consensus 345 ~~~~~~L~~L~Ls~n-~L~~Lp--~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~ 421 (567)
T 1dce_A 345 SATDEQLFRCELSVE-KSTVLQ--SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421 (567)
T ss_dssp CSTTTTSSSCCCCHH-HHHHHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred cccCccceeccCChh-hHHhhH--HHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc
Confidence 356778888888874 456665 356777788888775542 2222333 44555666665 34332
Q ss_pred CcccCc------ccCC--CCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCC
Q 011891 78 IEELPS------SIGC--LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSL 149 (475)
Q Consensus 78 i~~lp~------~i~~--l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l 149 (475)
+..++. .+.. ...|+.|++++| .++.+|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++|. +
T Consensus 422 ~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l 498 (567)
T 1dce_A 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-L 498 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-C
T ss_pred cchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-C
Confidence 222111 0000 124666777665 3455665 666677777777777777666666666777777776665 3
Q ss_pred CccccCCCCCCCCCEEEecCCCCCCc--chhhCCCCCCceeEeccCCccccchH----HhhcCCccccc
Q 011891 150 KSLKLPFDGLYSLTYLYLTDCAITEL--PESLGLLSSLEELYLERNNFERIPES----IIRLSKLSSLL 212 (475)
Q Consensus 150 ~~l~~~~~~l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~L~~n~l~~lp~~----i~~l~~L~~L~ 212 (475)
..+| .++++++|+.|+|++|.++++ |..++.+++|+.|+|++|+++.+|.. +..+++|+.|+
T Consensus 499 ~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 499 ENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 3355 556666677777777766665 66666677777777777766655432 23355665554
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=1.3e-14 Score=134.33 Aligned_cols=148 Identities=26% Similarity=0.304 Sum_probs=109.8
Q ss_pred cEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCc--ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeC
Q 011891 46 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPS--SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG 122 (475)
Q Consensus 46 ~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~ 122 (475)
+.+++++ +.++.+|. + .+.+++|+|++|.++.++. .+..+++|++|++++|......+..+..+++|++|++++
T Consensus 14 ~~l~~s~-n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSN-QKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCS-SCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCC-CCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4677776 45666665 3 2456778888888877633 367788888888887653333334677888888888888
Q ss_pred cCCccCCcc-cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCcc
Q 011891 123 SAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFE 196 (475)
Q Consensus 123 ~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~ 196 (475)
|.++.++.. +..+++|++|++++|......|..+.++++|+.|+|++|+++.+ |..+..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 888877654 77788888888888876555566777888888999988888886 677888889999999988875
No 107
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.60 E-value=4.4e-15 Score=158.30 Aligned_cols=221 Identities=20% Similarity=0.193 Sum_probs=175.8
Q ss_pred cCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCC--CcC-cCCCCCCcEEEccccCCcccCcccCCCCC
Q 011891 14 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKS--LPE-ISSAGNIEKILLDGTAIEELPSSIGCLSR 90 (475)
Q Consensus 14 ~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~--~p~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~ 90 (475)
..+..|+.+++..+... ..+ ....+++|+.|+++++..... .+. ...+.+|+.|++..+.+..++..+..+++
T Consensus 346 ~~l~~L~~l~l~~n~~~-~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~ 421 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGG-NAF---SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQ 421 (635)
T ss_dssp CBCTTCCEEEEESCCSC-CBC---CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTT
T ss_pred ccchhhhhcccccccCC-CCc---ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccccccc
Confidence 35778999999886432 222 245789999999998643221 222 44788999999999998888888899999
Q ss_pred CcEEeeeCCCCCCccc-cccCCCCCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCCCCCCc-cccCCCCCCCCCEEEe
Q 011891 91 LLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKS-LKLPFDGLYSLTYLYL 167 (475)
Q Consensus 91 L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~-l~~~~~~l~~L~~L~L 167 (475)
|+.+++..+......+ ..+..+++++.++++.|.+..+ +..+..+++|+.|++++|..... .|..+..+++|+.|+|
T Consensus 422 L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~L 501 (635)
T 4g8a_A 422 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501 (635)
T ss_dssp CCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEEC
Confidence 9999999877655544 3467899999999999999855 45678899999999999986554 5667789999999999
Q ss_pred cCCCCCCc-chhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccccccccCC----CccCcceecccccc
Q 011891 168 TDCAITEL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPK----LPCNLYWLDAQHCT 238 (475)
Q Consensus 168 ~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~----l~~~L~~L~i~~c~ 238 (475)
++|+++++ |..++.+++|+.|+|++|+++.++ ..+..+++|+.|++++|+.....|. +|.+|+.|++++++
T Consensus 502 s~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99999995 677899999999999999999876 5688999999999999864443333 45778888887753
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=9.2e-15 Score=135.37 Aligned_cols=145 Identities=26% Similarity=0.397 Sum_probs=122.1
Q ss_pred cEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCC
Q 011891 69 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDC 146 (475)
Q Consensus 69 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c 146 (475)
+.++++++.++++|..+. ++|+.|++++|. +..++ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 578899999999998764 789999999975 44554 4788899999999999999976 678999999999999998
Q ss_pred CCCCccccC-CCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCccccch-HHhhcCCcccccccccc
Q 011891 147 KSLKSLKLP-FDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 147 ~~l~~l~~~-~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~l~~c~ 217 (475)
.. ..+|.. +.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|+++.++. .+..+++|+.|++++|+
T Consensus 91 ~l-~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 91 KI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cC-CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 74 455543 57899999999999999985 5678899999999999999988874 57788899999988874
No 109
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.60 E-value=2.3e-17 Score=169.69 Aligned_cols=222 Identities=19% Similarity=0.232 Sum_probs=153.8
Q ss_pred CCCCCcEEeccCCCCccCCC---ChhhccCCCCCcEEEEeCCCCCCCCc-C-cC-----CCCCCcEEEccccCCcc----
Q 011891 15 HHGKLNQIIMAACNIFTKTP---NPSLIQHLNKLVILNLSGCSKLKSLP-E-IS-----SAGNIEKILLDGTAIEE---- 80 (475)
Q Consensus 15 ~l~~L~~L~Ls~~~~l~~~p---~~~~~~~l~~L~~L~L~~c~~l~~~p-~-i~-----~l~~L~~L~L~~~~i~~---- 80 (475)
..++|++|++++|. ++... ....+..+++|++|++++|. +.... . +. ..++|++|++++|.++.
T Consensus 140 ~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 217 (461)
T 1z7x_W 140 PQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217 (461)
T ss_dssp TTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred CCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence 35689999999974 33221 02345667899999999975 43321 1 22 36699999999998875
Q ss_pred -cCcccCCCCCCcEEeeeCCCCCCc----c-ccccCCCCCCcEEEeeCcCCcc-----CCcccCCCCCcCEEEcCCCCCC
Q 011891 81 -LPSSIGCLSRLLELNLGDCKNLKT----L-PSSLCKLKSLEEICLTGSAIEE-----LPSPIECLSALCVLDLGDCKSL 149 (475)
Q Consensus 81 -lp~~i~~l~~L~~L~L~~c~~l~~----l-p~~l~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l 149 (475)
++..+..+++|++|++++|..... + +.....+++|++|++++|.++. ++..+..+++|++|++++|...
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 567777889999999999753221 2 2223358899999999998885 6777778899999999988632
Q ss_pred CccccCC-----CCCCCCCEEEecCCCCCC-----cchhhCCCCCCceeEeccCCcccc-chHHhh-----cCCcccccc
Q 011891 150 KSLKLPF-----DGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFERI-PESIIR-----LSKLSSLLV 213 (475)
Q Consensus 150 ~~l~~~~-----~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~-----l~~L~~L~l 213 (475)
...+..+ ...++|+.|++++|.+++ ++..+..+++|+.|++++|.++.. +..+.. .++|+.|++
T Consensus 298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence 2111111 234689999999998886 466677888999999999988643 233332 678999999
Q ss_pred ccccccc----ccCCC---ccCcceecccccc
Q 011891 214 SYCERLQ----SLPKL---PCNLYWLDAQHCT 238 (475)
Q Consensus 214 ~~c~~l~----~lp~l---~~~L~~L~i~~c~ 238 (475)
++|..-. .+|.. .++|+.|+++++.
T Consensus 378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 9885321 44432 3678888888773
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=7.6e-15 Score=135.91 Aligned_cols=147 Identities=24% Similarity=0.247 Sum_probs=124.4
Q ss_pred CcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCcc-c-cccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcC
Q 011891 68 IEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTL-P-SSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLG 144 (475)
Q Consensus 68 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l-p-~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~ 144 (475)
-+.++++++.++.+|..+. ..+++|++++|. +..+ | ..+..+++|++|++++|.++.++. .+..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 3589999999999998663 467899999975 4555 3 347889999999999999998776 78999999999999
Q ss_pred CCCCCCccccCCCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCcccc-chHHhhcCCcccccccccc
Q 011891 145 DCKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 145 ~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c~ 217 (475)
+|......+..+.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|+++.+ |..+..+++|+.|++++|+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 9986555555578899999999999999996 67788999999999999999877 6788889999999998874
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=2.4e-14 Score=133.42 Aligned_cols=148 Identities=27% Similarity=0.335 Sum_probs=89.3
Q ss_pred CcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCC
Q 011891 68 IEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDC 146 (475)
Q Consensus 68 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c 146 (475)
.+.++.+++.+..+|..+. ++|++|+|++|......|..+..+++|++|++++|.++.+|.. +..+++|+.|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4456666666666665442 6666666666554444455566666666666666666666543 456666666666666
Q ss_pred CCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccc
Q 011891 147 KSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 147 ~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~ 217 (475)
......+..+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|+++.+| ..+..+++|+.|++++|+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 53322222345666666666666666666666666666666666666666555 335566666666666654
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=4.1e-16 Score=155.63 Aligned_cols=215 Identities=14% Similarity=0.130 Sum_probs=155.4
Q ss_pred CCCCCccccc-----ccccCCC-CCcEEeccCCCCccCCCChhhccCC-----CCCcEEEEeCCCCCCCCcC-----cCC
Q 011891 1 MPHSNIEQLS-----ESVQHHG-KLNQIIMAACNIFTKTPNPSLIQHL-----NKLVILNLSGCSKLKSLPE-----ISS 64 (475)
Q Consensus 1 l~~s~l~~L~-----~~~~~l~-~L~~L~Ls~~~~l~~~p~~~~~~~l-----~~L~~L~L~~c~~l~~~p~-----i~~ 64 (475)
|++|+|...+ +.++.++ +|++|+|++|. ++.... ..+..+ ++|++|+|++|..-...+. +..
T Consensus 29 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~-~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 106 (362)
T 3goz_A 29 LSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNS-DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAA 106 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCH-HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred ccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHH-HHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHh
Confidence 4567777765 6778888 99999999974 444322 233332 8999999999763333333 334
Q ss_pred C-CCCcEEEccccCCcccCc-----ccCC-CCCCcEEeeeCCCCCC----ccccccCCCC-CCcEEEeeCcCCccCCc--
Q 011891 65 A-GNIEKILLDGTAIEELPS-----SIGC-LSRLLELNLGDCKNLK----TLPSSLCKLK-SLEEICLTGSAIEELPS-- 130 (475)
Q Consensus 65 l-~~L~~L~L~~~~i~~lp~-----~i~~-l~~L~~L~L~~c~~l~----~lp~~l~~l~-~L~~L~l~~~~i~~lp~-- 130 (475)
+ ++|++|++++|.++..+. .+.. .++|++|++++|.... .++..+..++ +|++|++++|.++....
T Consensus 107 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 186 (362)
T 3goz_A 107 IPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAE 186 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHH
Confidence 4 899999999999986654 2344 3699999999986543 4455556665 99999999999986543
Q ss_pred ---ccCCC-CCcCEEEcCCCCCCCc----cccCCCC-CCCCCEEEecCCCCCCc-----chhhCCCCCCceeEeccCCcc
Q 011891 131 ---PIECL-SALCVLDLGDCKSLKS----LKLPFDG-LYSLTYLYLTDCAITEL-----PESLGLLSSLEELYLERNNFE 196 (475)
Q Consensus 131 ---~i~~l-~~L~~L~L~~c~~l~~----l~~~~~~-l~~L~~L~L~~~~l~~l-----p~~l~~l~~L~~L~L~~n~l~ 196 (475)
.+... ++|++|++++|..... ++..+.. .++|+.|+|++|.+++. ...+..+++|+.|++++|.+.
T Consensus 187 l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 187 LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 34455 5999999999984331 3333333 45899999999999884 344578899999999999854
Q ss_pred c--------cchHHhhcCCcccccccccc
Q 011891 197 R--------IPESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 197 ~--------lp~~i~~l~~L~~L~l~~c~ 217 (475)
. ++..+..+++|+.|++++|+
T Consensus 267 ~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 267 NMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3 33445667888888998885
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.2e-14 Score=128.35 Aligned_cols=128 Identities=23% Similarity=0.238 Sum_probs=79.3
Q ss_pred CCCCcEEEccccCCc--ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEE
Q 011891 65 AGNIEKILLDGTAIE--ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLD 142 (475)
Q Consensus 65 l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 142 (475)
.++|++|++++|.+. .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.++.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~--------------- 85 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFG--------------- 85 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCS---------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCch---------------
Confidence 356666666666665 555555556666666666554 3333 345555555555555555544
Q ss_pred cCCCCCCCccccCCCCCCCCCEEEecCCCCCCcc--hhhCCCCCCceeEeccCCccccch----HHhhcCCccccccccc
Q 011891 143 LGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP--ESLGLLSSLEELYLERNNFERIPE----SIIRLSKLSSLLVSYC 216 (475)
Q Consensus 143 L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~i~~l~~L~~L~l~~c 216 (475)
.+|..+..+++|+.|++++|.++++| ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|
T Consensus 86 --------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 86 --------GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp --------CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred --------HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 23333344666777777777777654 567777777777777777776665 5677777777777776
Q ss_pred c
Q 011891 217 E 217 (475)
Q Consensus 217 ~ 217 (475)
.
T Consensus 158 ~ 158 (168)
T 2ell_A 158 E 158 (168)
T ss_dssp T
T ss_pred C
Confidence 3
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=2.4e-14 Score=142.71 Aligned_cols=169 Identities=23% Similarity=0.309 Sum_probs=135.6
Q ss_pred cEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cC-CCCCCcEEEccccCCcccCc-ccCCCCCCcEEe
Q 011891 20 NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--IS-SAGNIEKILLDGTAIEELPS-SIGCLSRLLELN 95 (475)
Q Consensus 20 ~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~-~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~ 95 (475)
+.+++++ ..++.+|. .+ .+.++.|+|++| .+..++. +. .+++|++|+|++|.|+.++. .+..+++|++|+
T Consensus 21 ~~l~c~~-~~l~~iP~--~~--~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQ--SL--PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCS-SCCSSCCS--SC--CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCC-CCcCccCc--cC--CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 6788887 46788885 22 246899999995 5666655 55 89999999999999998875 688999999999
Q ss_pred eeCCCCCCccc-cccCCCCCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCCCCCCccccCC----CCCCCCCEEEecC
Q 011891 96 LGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLPF----DGLYSLTYLYLTD 169 (475)
Q Consensus 96 L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~l~~~~----~~l~~L~~L~L~~ 169 (475)
|++|. +..++ ..+..+++|++|++++|.++.+ |..+..+++|+.|+|++|. +..+|... ..+++|+.|+|++
T Consensus 95 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 95 LSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp CCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCS
T ss_pred CCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCC
Confidence 99976 55554 4678899999999999999976 5678999999999999987 45565543 5689999999999
Q ss_pred CCCCCcc-hhhCCCCC--CceeEeccCCcc
Q 011891 170 CAITELP-ESLGLLSS--LEELYLERNNFE 196 (475)
Q Consensus 170 ~~l~~lp-~~l~~l~~--L~~L~L~~n~l~ 196 (475)
|+++.+| ..+..++. |+.|+|++|.+.
T Consensus 173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 9999976 45666776 488999999885
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=9.9e-15 Score=128.94 Aligned_cols=134 Identities=22% Similarity=0.297 Sum_probs=102.4
Q ss_pred CCCCCcEEEEeCCCCC-CCCcC-cCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEE
Q 011891 41 HLNKLVILNLSGCSKL-KSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEI 118 (475)
Q Consensus 41 ~l~~L~~L~L~~c~~l-~~~p~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L 118 (475)
..++|+.|++++|... ..+|. +..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|..+..+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 4578999999997633 37888 58999999999999999988 788999999999999987665588777779999999
Q ss_pred EeeCcCCccCC--cccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcch----hhCCCCCCceeEecc
Q 011891 119 CLTGSAIEELP--SPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE----SLGLLSSLEELYLER 192 (475)
Q Consensus 119 ~l~~~~i~~lp--~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~----~l~~l~~L~~L~L~~ 192 (475)
++++|.++.+| ..+.. +++|+.|++++|.++++|. .+..+++|+.|++++
T Consensus 101 ~Ls~N~l~~~~~~~~l~~------------------------l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKK------------------------LECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp ECBSSSCCSSGGGGGGSS------------------------CSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred eccCCccCcchhHHHHhc------------------------CCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 99999888765 34444 4455555555555555544 566666666666666
Q ss_pred CCccccc
Q 011891 193 NNFERIP 199 (475)
Q Consensus 193 n~l~~lp 199 (475)
|.+..+|
T Consensus 157 n~~~~~~ 163 (168)
T 2ell_A 157 REDQEAP 163 (168)
T ss_dssp TTSCBCC
T ss_pred CChhhcc
Confidence 6666555
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=2.1e-14 Score=124.17 Aligned_cols=126 Identities=22% Similarity=0.218 Sum_probs=87.8
Q ss_pred CCCcEEeeeCCCCC-CccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEe
Q 011891 89 SRLLELNLGDCKNL-KTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYL 167 (475)
Q Consensus 89 ~~L~~L~L~~c~~l-~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L 167 (475)
++|++|++++|... ..+|..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.....+|..+..+++|+.|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 45556666655433 25555556666666666666666655 55666666777777766644445555556788888888
Q ss_pred cCCCCCCcc--hhhCCCCCCceeEeccCCccccch----HHhhcCCcccccccc
Q 011891 168 TDCAITELP--ESLGLLSSLEELYLERNNFERIPE----SIIRLSKLSSLLVSY 215 (475)
Q Consensus 168 ~~~~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~i~~l~~L~~L~l~~ 215 (475)
++|.+++++ ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888888854 778888999999999998887775 678888888888763
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=5.7e-16 Score=163.40 Aligned_cols=106 Identities=22% Similarity=0.265 Sum_probs=94.5
Q ss_pred CCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccC
Q 011891 114 SLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERN 193 (475)
Q Consensus 114 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n 193 (475)
.|+.|++++|.++.+|. +..+++|+.|++++|. +..+|..++++++|+.|+|++|.++++| .++.+++|+.|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 58899999999999987 9999999999999987 4588888899999999999999999998 8899999999999999
Q ss_pred Ccccc--chHHhhcCCcccccccccccccccC
Q 011891 194 NFERI--PESIIRLSKLSSLLVSYCERLQSLP 223 (475)
Q Consensus 194 ~l~~l--p~~i~~l~~L~~L~l~~c~~l~~lp 223 (475)
+++.+ |..++.+++|+.|++++|+ ++.+|
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence 99887 8899999999999999985 44444
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=1.2e-14 Score=157.96 Aligned_cols=156 Identities=24% Similarity=0.320 Sum_probs=79.6
Q ss_pred cCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccC
Q 011891 76 TAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 155 (475)
Q Consensus 76 ~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~ 155 (475)
+.+...+..+..+++|+.|+|++|. +..+|..+..+++|++|+|++|.++.+|..+..+++|+.|+|++|. +..+|..
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~ 288 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE 288 (727)
T ss_dssp -----------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS
T ss_pred cceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh
Confidence 3344444455566666666666644 3355555556666666666666666666666666666666666665 3355666
Q ss_pred CCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcc-ccchHHhhcC-CcccccccccccccccCCCccCcceec
Q 011891 156 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE-RIPESIIRLS-KLSSLLVSYCERLQSLPKLPCNLYWLD 233 (475)
Q Consensus 156 ~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~-~L~~L~l~~c~~l~~lp~l~~~L~~L~ 233 (475)
+.++++|+.|+|++|.++.+|..++.+++|+.|+|++|.++ .+|..+..+. .+..|++++|..... +|..+..|+
T Consensus 289 ~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~---~p~~l~~l~ 365 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP---LPHERRFIE 365 (727)
T ss_dssp GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCC-----
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc---CccccceeE
Confidence 66666666666666666666666666667777777776665 3334443321 122345555543322 334455555
Q ss_pred ccc
Q 011891 234 AQH 236 (475)
Q Consensus 234 i~~ 236 (475)
+.+
T Consensus 366 l~~ 368 (727)
T 4b8c_D 366 INT 368 (727)
T ss_dssp ---
T ss_pred eec
Confidence 443
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.49 E-value=1.9e-15 Score=160.30 Aligned_cols=227 Identities=17% Similarity=0.076 Sum_probs=157.3
Q ss_pred ccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCC--CcC-cCCCCCCcEEEccccCCc--ccCc
Q 011891 9 LSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKS--LPE-ISSAGNIEKILLDGTAIE--ELPS 83 (475)
Q Consensus 9 L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~--~p~-i~~l~~L~~L~L~~~~i~--~lp~ 83 (475)
.+..+..+++|+.|+++++ ....+| ..+..+++|++|+|++|. +.. ++. +..+++|++|+++ +.+. .++.
T Consensus 262 ~~~~l~~~~~L~~L~l~~~-~~~~l~--~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~ 336 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYM-GPNEMP--ILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEV 336 (592)
T ss_dssp SSSCCCCCTTCCEEEETTC-CTTTGG--GGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHH
T ss_pred HHHHhhccccccccCcccc-chhHHH--HHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHH
Confidence 3456778889999999874 223333 346678899999999987 432 222 5788999999998 3333 3444
Q ss_pred ccCCCCCCcEEeeeC----------CCCCCc--cccccCCCCCCcEEEeeCcCCcc-CCcccCC-CCCcCEEEcCC---C
Q 011891 84 SIGCLSRLLELNLGD----------CKNLKT--LPSSLCKLKSLEEICLTGSAIEE-LPSPIEC-LSALCVLDLGD---C 146 (475)
Q Consensus 84 ~i~~l~~L~~L~L~~----------c~~l~~--lp~~l~~l~~L~~L~l~~~~i~~-lp~~i~~-l~~L~~L~L~~---c 146 (475)
....+++|++|++++ |..++. ++.....+++|++|+++.+.++. .+..+.. +++|+.|++++ |
T Consensus 337 ~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE 416 (592)
T ss_dssp HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence 456788999999995 666653 33334558899999998887772 3333443 78899999974 4
Q ss_pred CCCCcccc------CCCCCCCCCEEEecCCC--CCC--cchhhCCCCCCceeEeccCCcc--ccchHHhhcCCccccccc
Q 011891 147 KSLKSLKL------PFDGLYSLTYLYLTDCA--ITE--LPESLGLLSSLEELYLERNNFE--RIPESIIRLSKLSSLLVS 214 (475)
Q Consensus 147 ~~l~~l~~------~~~~l~~L~~L~L~~~~--l~~--lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~l~ 214 (475)
..+...|. .+.++++|+.|+++.|. +++ +......+++|+.|++++|+++ .++..+..+++|++|+|+
T Consensus 417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence 45554332 24568889999998764 555 3333345888999999999886 456667888999999999
Q ss_pred ccccccc--cCC---CccCcceecccccccCcc
Q 011891 215 YCERLQS--LPK---LPCNLYWLDAQHCTTLES 242 (475)
Q Consensus 215 ~c~~l~~--lp~---l~~~L~~L~i~~c~~L~~ 242 (475)
+|. ++. ++. -.++|+.|++++|. ++.
T Consensus 497 ~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 497 GCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp SCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred CCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 997 321 222 24688999999987 443
No 120
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.47 E-value=2.3e-15 Score=159.65 Aligned_cols=192 Identities=19% Similarity=0.115 Sum_probs=103.1
Q ss_pred CcEEEEeCCCCCCC--CcC-cCCCCCCcEEEccccCCcc-----cCcccCCCCCCcEEeeeCCCCC----CccccccCCC
Q 011891 45 LVILNLSGCSKLKS--LPE-ISSAGNIEKILLDGTAIEE-----LPSSIGCLSRLLELNLGDCKNL----KTLPSSLCKL 112 (475)
Q Consensus 45 L~~L~L~~c~~l~~--~p~-i~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l----~~lp~~l~~l 112 (475)
|++|+|++|..+.. ++. ...+++|++|+|++|.+.. ++.....+++|++|++++|... ..++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 66666666542211 111 1255667777777665432 2223345666777777665432 2344445566
Q ss_pred CCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCC---CccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeE
Q 011891 113 KSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSL---KSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELY 189 (475)
Q Consensus 113 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l---~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 189 (475)
++|++|++++|.+..+|..+..+++|+.|+++++... ......+..+++|+.|+++++....+|..+..+++|++|+
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEE
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEe
Confidence 7777777777766666666666667777776643322 1122233455666666666655455666666666666666
Q ss_pred eccCCcc--ccchHHhhcCCcccccccccccccccCC---CccCcceecccc
Q 011891 190 LERNNFE--RIPESIIRLSKLSSLLVSYCERLQSLPK---LPCNLYWLDAQH 236 (475)
Q Consensus 190 L~~n~l~--~lp~~i~~l~~L~~L~l~~c~~l~~lp~---l~~~L~~L~i~~ 236 (475)
+++|.++ .++..+..+++|+.|+++++..-..++. ..++|+.|++.+
T Consensus 300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred cCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 6666653 2223345666666666653322222221 124456666653
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=2.6e-13 Score=120.83 Aligned_cols=102 Identities=23% Similarity=0.273 Sum_probs=67.0
Q ss_pred CCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCC-CCCCCCCEEEecCCCCCCcch--hhCCCCCCceeEe
Q 011891 114 SLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPF-DGLYSLTYLYLTDCAITELPE--SLGLLSSLEELYL 190 (475)
Q Consensus 114 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~-~~l~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~L 190 (475)
+|++|++++|.++.+ ..+..+++|+.|++++|. +..+|... ..+++|+.|++++|.++++|. .+..+++|+.|++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 444444444444443 344444555555555544 22333222 566778888888888877776 6778888888888
Q ss_pred ccCCccccchH----HhhcCCcccccccccc
Q 011891 191 ERNNFERIPES----IIRLSKLSSLLVSYCE 217 (475)
Q Consensus 191 ~~n~l~~lp~~----i~~l~~L~~L~l~~c~ 217 (475)
++|.++.+|.. +..+++|+.|++++|.
T Consensus 121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 88888887764 7888888888888774
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.43 E-value=1.5e-12 Score=117.68 Aligned_cols=125 Identities=30% Similarity=0.377 Sum_probs=74.1
Q ss_pred cEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCcccc--ccCCCCCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCC
Q 011891 69 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPS--SLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGD 145 (475)
Q Consensus 69 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~--~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~ 145 (475)
++++++++.++++|..+.. +|++|++++|. +..++. .+..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3444444445444443322 45555555542 233332 245555566666666655544 34555566666666666
Q ss_pred CCCCCccccCCCCCCCCCEEEecCCCCCC-cchhhCCCCCCceeEeccCCcc
Q 011891 146 CKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFE 196 (475)
Q Consensus 146 c~~l~~l~~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~L~~n~l~ 196 (475)
|......+..+.++++|+.|+|++|+++. .|..+..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 55433333445677778888888888887 4667778888888888888875
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=1.5e-13 Score=118.66 Aligned_cols=123 Identities=25% Similarity=0.331 Sum_probs=70.3
Q ss_pred CCCcEEEccccCCc--ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCcc-CCcccCCCCCcCEEE
Q 011891 66 GNIEKILLDGTAIE--ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE-LPSPIECLSALCVLD 142 (475)
Q Consensus 66 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~ 142 (475)
++|+.|++++|.+. .+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|.++. +|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444444444444 444444455555555555542 2333 345555555555555555554 444444556666666
Q ss_pred cCCCCCCCccc--cCCCCCCCCCEEEecCCCCCCcch----hhCCCCCCceeEec
Q 011891 143 LGDCKSLKSLK--LPFDGLYSLTYLYLTDCAITELPE----SLGLLSSLEELYLE 191 (475)
Q Consensus 143 L~~c~~l~~l~--~~~~~l~~L~~L~L~~~~l~~lp~----~l~~l~~L~~L~L~ 191 (475)
+++|. +..++ ..+..+++|+.|++++|.++++|. .+..+++|+.|+++
T Consensus 95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66655 23322 445667778888888887777654 57778888888765
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=9e-14 Score=150.96 Aligned_cols=158 Identities=20% Similarity=0.144 Sum_probs=105.1
Q ss_pred CCCcEEEccccCCcccCcccCCCCCCcEEeeeC----CCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEE
Q 011891 66 GNIEKILLDGTAIEELPSSIGCLSRLLELNLGD----CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVL 141 (475)
Q Consensus 66 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~----c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 141 (475)
+.++.|+|.++.+...+..+.....|..+.+.. +..+...|..+..++.|+.|++++|.+..+|..+..+++|+.|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 445666666666665555444444444444332 2344456778889999999999999999999999999999999
Q ss_pred EcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccc
Q 011891 142 DLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQS 221 (475)
Q Consensus 142 ~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~ 221 (475)
+|++|. +..+|..+.++++|+.|+|++|.++.+|..++.+++|++|+|++|.|+.+|..++.+++|+.|+|++|+....
T Consensus 253 ~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 253 YLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp BCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred EeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 999997 4488988899999999999999999999999999999999999999999998899999999999999975555
Q ss_pred cCC
Q 011891 222 LPK 224 (475)
Q Consensus 222 lp~ 224 (475)
+|.
T Consensus 332 ~p~ 334 (727)
T 4b8c_D 332 FLK 334 (727)
T ss_dssp HHH
T ss_pred ChH
Confidence 554
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=1.9e-13 Score=121.81 Aligned_cols=130 Identities=19% Similarity=0.260 Sum_probs=75.0
Q ss_pred CCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCccc-CCCCCcCEEEc
Q 011891 65 AGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDL 143 (475)
Q Consensus 65 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~L 143 (475)
+.+|++|++++|.++.++......++|++|++++|. +..+ ..+..+++|++|++++|.++.+|+.+ ..+++|+.|++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 334444444444444443211112245555555432 2233 34455555555555555555555443 55566666666
Q ss_pred CCCCCCCcccc--CCCCCCCCCEEEecCCCCCCcchh----hCCCCCCceeEeccCCccc
Q 011891 144 GDCKSLKSLKL--PFDGLYSLTYLYLTDCAITELPES----LGLLSSLEELYLERNNFER 197 (475)
Q Consensus 144 ~~c~~l~~l~~--~~~~l~~L~~L~L~~~~l~~lp~~----l~~l~~L~~L~L~~n~l~~ 197 (475)
++|. +..+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+..
T Consensus 96 ~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 96 TNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 6654 244443 456777888888888888877764 7888899999998887654
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=2.4e-12 Score=116.38 Aligned_cols=126 Identities=24% Similarity=0.320 Sum_probs=90.4
Q ss_pred cEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCcc--cCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeC
Q 011891 46 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSS--IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG 122 (475)
Q Consensus 46 ~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~~--i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~ 122 (475)
+.+++++ +.++.+|. +. .+|++|++++|.++.++.. ++.+++|++|+|++|......|..+..+++|++|++++
T Consensus 11 ~~l~~s~-~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCC-CCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 5566666 35566665 32 2777777777777766653 67777788888877655555566777788888888888
Q ss_pred cCCccCCcc-cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCC
Q 011891 123 SAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE 174 (475)
Q Consensus 123 ~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~ 174 (475)
|.++.++.. +..+++|++|++++|......|..+..+++|+.|+|++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 888766553 6778888888888887655556677788888888888887764
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=3e-12 Score=115.82 Aligned_cols=124 Identities=27% Similarity=0.321 Sum_probs=72.2
Q ss_pred EEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCC
Q 011891 70 KILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKS 148 (475)
Q Consensus 70 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~ 148 (475)
.++++++.++++|..+ .++|++|++++| .++.+|..+..+++|++|++++|.++.++. .+..+++|+.|++++|..
T Consensus 14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCC--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCC--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4444555555555433 235555555553 234455555555555555555555555443 355555555566555553
Q ss_pred CCccccCCCCCCCCCEEEecCCCCCCcch-hhCCCCCCceeEeccCCcc
Q 011891 149 LKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFE 196 (475)
Q Consensus 149 l~~l~~~~~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~n~l~ 196 (475)
....+..+.++++|+.|+|++|.++.+|. .+..+++|+.|++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 33333345667777777777777777655 4667788888888887764
No 128
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.40 E-value=1.7e-14 Score=153.00 Aligned_cols=199 Identities=20% Similarity=0.253 Sum_probs=127.5
Q ss_pred cCCCCCcEEeccCCCCccCCCChhhcc-CCCCCcEEEEeCCCCCCC--CcCc-CCCCCCcEEEccccCCcc-----cCcc
Q 011891 14 QHHGKLNQIIMAACNIFTKTPNPSLIQ-HLNKLVILNLSGCSKLKS--LPEI-SSAGNIEKILLDGTAIEE-----LPSS 84 (475)
Q Consensus 14 ~~l~~L~~L~Ls~~~~l~~~p~~~~~~-~l~~L~~L~L~~c~~l~~--~p~i-~~l~~L~~L~L~~~~i~~-----lp~~ 84 (475)
..+++|++|+|++|. ++... +..+. .+++|++|+|++|..+.. ++.+ ..+++|++|++++|.+.. ++..
T Consensus 102 ~~~~~L~~L~L~~~~-~~~~~-~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV-VTDDC-LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HHCTTCCEEEEESCB-CCHHH-HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred HhCCCCCeEEeeCcE-EcHHH-HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 467889999999875 32221 12232 578899999988865554 4443 378888888888887553 3333
Q ss_pred cCCCCCCcEEeeeCCC-CC--CccccccCCCCCCcEEEeeCc-CCccCCcccCCCCCcCEEEcCCCC-------------
Q 011891 85 IGCLSRLLELNLGDCK-NL--KTLPSSLCKLKSLEEICLTGS-AIEELPSPIECLSALCVLDLGDCK------------- 147 (475)
Q Consensus 85 i~~l~~L~~L~L~~c~-~l--~~lp~~l~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~L~~c~------------- 147 (475)
...+++|++|++++|. .+ ..++..+..+++|++|++++| .+..++..+..+++|+.|+++++.
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 4467788888888875 11 112222345688888888877 444555666667777777654432
Q ss_pred ------CCCc-----------cccCCCCCCCCCEEEecCCCCCC--cchhhCCCCCCceeEeccCCcc--ccchHHhhcC
Q 011891 148 ------SLKS-----------LKLPFDGLYSLTYLYLTDCAITE--LPESLGLLSSLEELYLERNNFE--RIPESIIRLS 206 (475)
Q Consensus 148 ------~l~~-----------l~~~~~~l~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~ 206 (475)
.++. ++.....+++|+.|++++|.+++ +...+..+++|+.|++++| +. .++.....++
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 2222 11112356788888888888765 4455677888888888887 43 3333445678
Q ss_pred Ccccccccc
Q 011891 207 KLSSLLVSY 215 (475)
Q Consensus 207 ~L~~L~l~~ 215 (475)
+|+.|++.+
T Consensus 339 ~L~~L~L~~ 347 (594)
T 2p1m_B 339 DLRELRVFP 347 (594)
T ss_dssp TCCEEEEEC
T ss_pred CCCEEEEec
Confidence 888888843
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=7.3e-12 Score=111.38 Aligned_cols=128 Identities=26% Similarity=0.381 Sum_probs=77.0
Q ss_pred cEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCC
Q 011891 69 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDC 146 (475)
Q Consensus 69 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c 146 (475)
+.+++++++++.+|..+ .++|++|++++|.. +.+| ..+..+++|++|++++|.++.+|.. +..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcc-cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 44555555555555433 24556666665442 3333 2345566666666666666655543 456666666666666
Q ss_pred CCCCccccCCCCCCCCCEEEecCCCCCCcchh-hCCCCCCceeEeccCCccccc
Q 011891 147 KSLKSLKLPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFERIP 199 (475)
Q Consensus 147 ~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp 199 (475)
......+..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+...+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 53322222346677788888888888876654 467888888888888876433
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=2.9e-12 Score=115.92 Aligned_cols=123 Identities=24% Similarity=0.345 Sum_probs=105.0
Q ss_pred cEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCC
Q 011891 92 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCA 171 (475)
Q Consensus 92 ~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~ 171 (475)
++++++++ .++.+|..+. ++|++|++++|.++.+|..+..+++|+.|++++|......+..+.++++|+.|+|++|.
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 57888874 5778887664 68999999999999999999999999999999998655455567899999999999999
Q ss_pred CCCcc-hhhCCCCCCceeEeccCCccccch-HHhhcCCcccccccccc
Q 011891 172 ITELP-ESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 172 l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~l~~c~ 217 (475)
++.++ ..+..+++|+.|+|++|+++.+|. .+..+++|+.|++++|+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 99965 468899999999999999998885 47788999999988874
No 131
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.36 E-value=2e-14 Score=152.48 Aligned_cols=223 Identities=17% Similarity=0.116 Sum_probs=140.1
Q ss_pred ccCCCCCcEEeccCCCCccCCCCh-------------hhccCCCCCcEEEEeCCCCCCCCcC-cC-CCCCCcEEEcccc-
Q 011891 13 VQHHGKLNQIIMAACNIFTKTPNP-------------SLIQHLNKLVILNLSGCSKLKSLPE-IS-SAGNIEKILLDGT- 76 (475)
Q Consensus 13 ~~~l~~L~~L~Ls~~~~l~~~p~~-------------~~~~~l~~L~~L~L~~c~~l~~~p~-i~-~l~~L~~L~L~~~- 76 (475)
+..+++|+.|++++|..+...... .....+++|++|+|++|..-...+. +. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 456789999999998766543210 1134678999999999752222222 43 6889999999988
Q ss_pred CCcc--cCcccCCCCCCcEEeeeCCCCCC----ccccccCCCCCCcEEEeeCcC--Cc--cCCcccCCCCCcCEEEcCCC
Q 011891 77 AIEE--LPSSIGCLSRLLELNLGDCKNLK----TLPSSLCKLKSLEEICLTGSA--IE--ELPSPIECLSALCVLDLGDC 146 (475)
Q Consensus 77 ~i~~--lp~~i~~l~~L~~L~L~~c~~l~----~lp~~l~~l~~L~~L~l~~~~--i~--~lp~~i~~l~~L~~L~L~~c 146 (475)
.+.. ++....++++|++|++++|.... .++.....+++|++|++++|. +. .++..+..+++|+.|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 5553 55555678999999999986222 233344577899999999886 22 22223345789999999998
Q ss_pred CCCCccccCCCCCCCCCEEEecCCCC-------C------------------------CcchhhCCCCCCceeEeccCCc
Q 011891 147 KSLKSLKLPFDGLYSLTYLYLTDCAI-------T------------------------ELPESLGLLSSLEELYLERNNF 195 (475)
Q Consensus 147 ~~l~~l~~~~~~l~~L~~L~L~~~~l-------~------------------------~lp~~l~~l~~L~~L~L~~n~l 195 (475)
..+..++..+..+++|+.|+++.+.. . .++..+..+++|+.|++++|.+
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCC
T ss_pred CcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCC
Confidence 66665655556677788887655421 1 1333333456667777776665
Q ss_pred c--ccchHHhhcCCcccccccccccccccCC---CccCcceeccc
Q 011891 196 E--RIPESIIRLSKLSSLLVSYCERLQSLPK---LPCNLYWLDAQ 235 (475)
Q Consensus 196 ~--~lp~~i~~l~~L~~L~l~~c~~l~~lp~---l~~~L~~L~i~ 235 (475)
+ .++..+..+++|+.|++++|..-..++. ..++|+.|++.
T Consensus 302 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 302 QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred CHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEe
Confidence 4 2333345666777777766622111111 13456666663
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=4e-14 Score=128.69 Aligned_cols=129 Identities=23% Similarity=0.307 Sum_probs=71.9
Q ss_pred ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCC
Q 011891 80 ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGL 159 (475)
Q Consensus 80 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l 159 (475)
.+|..+..+++|++|++++|. +..+| .+..+++|++|++++|.++.+|..+..+++|+.|++++|. +..+| .+..+
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l 114 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKL 114 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccC
Confidence 333344444445555554432 33344 4444555555555555555554444444455555555543 22233 34456
Q ss_pred CCCCEEEecCCCCCCcch--hhCCCCCCceeEeccCCccccch-----------HHhhcCCccccc
Q 011891 160 YSLTYLYLTDCAITELPE--SLGLLSSLEELYLERNNFERIPE-----------SIIRLSKLSSLL 212 (475)
Q Consensus 160 ~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~L~~n~l~~lp~-----------~i~~l~~L~~L~ 212 (475)
++|+.|++++|.+++++. .+..+++|++|++++|.+...+. .+..+++|+.|+
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 677777777777777554 67778888888888887754322 256667777665
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=1.1e-11 Score=121.77 Aligned_cols=190 Identities=14% Similarity=0.155 Sum_probs=104.4
Q ss_pred CCCCcEEeccCCCCc--c-----------------CCCChhhccC--------CCCCcEEEEeCCCCCCCCcC--cCCCC
Q 011891 16 HGKLNQIIMAACNIF--T-----------------KTPNPSLIQH--------LNKLVILNLSGCSKLKSLPE--ISSAG 66 (475)
Q Consensus 16 l~~L~~L~Ls~~~~l--~-----------------~~p~~~~~~~--------l~~L~~L~L~~c~~l~~~p~--i~~l~ 66 (475)
+++|+.|||++++.. . .+|. ..+.+ +++|+.|+|.+ .++.+++ +..++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~-~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA-YAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECT-TTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCH-HHhcccccccccccCCCcEEECCc--cccchhHHHhhcCc
Confidence 788999999987533 0 2232 23456 78888888887 5777766 77888
Q ss_pred CCcEEEccccCCcccCc-ccCCCCCCcEEeeeC-----------------CCCCC---------cccccc----------
Q 011891 67 NIEKILLDGTAIEELPS-SIGCLSRLLELNLGD-----------------CKNLK---------TLPSSL---------- 109 (475)
Q Consensus 67 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~-----------------c~~l~---------~lp~~l---------- 109 (475)
+|+.|++.++.+..++. .+..+.++..+.+.. |..++ .++..+
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI 204 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence 88888888888776654 445555555554332 11111 000000
Q ss_pred ------------------CCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCcccc-CCCCCCCCC-EEEec
Q 011891 110 ------------------CKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLT-YLYLT 168 (475)
Q Consensus 110 ------------------~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~-~~~~l~~L~-~L~L~ 168 (475)
..+++|+.|++++|.++.+|. .+..+.+|+.+++.++ +..++. .+.++.+|+ .+++.
T Consensus 205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELP 282 (329)
T ss_dssp SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEEC
T ss_pred ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEc
Confidence 014555555555555555554 2455555555555554 333332 245555555 55555
Q ss_pred CCCCCCcc-hhhCCCCCCceeEeccCCccccch-HHhhcCCcccc
Q 011891 169 DCAITELP-ESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSL 211 (475)
Q Consensus 169 ~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L 211 (475)
+ +++.++ .++..+++|+.+++++|+++.++. .+.++++|+.+
T Consensus 283 ~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 283 A-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp T-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred c-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 5 444432 345555555555555555555542 34445555444
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.24 E-value=1.3e-10 Score=103.17 Aligned_cols=125 Identities=25% Similarity=0.386 Sum_probs=69.8
Q ss_pred cEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcc-cCCCCCCcEEeeeCCCCCCcccc-ccCCCCCCcEEEeeCc
Q 011891 46 VILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGS 123 (475)
Q Consensus 46 ~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~ 123 (475)
+.+++++ ..+..+|. ...++|++|++++|.++.++.. +..+++|++|++++|. ++.+|. .+..+++|++|++++|
T Consensus 10 ~~l~~~~-~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNS-KGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCS-SCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecC-CCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCC
Confidence 3444444 23444443 1124555555555555555442 3555666666666543 333332 3456666666666666
Q ss_pred CCccCCcc-cCCCCCcCEEEcCCCCCCCccccC-CCCCCCCCEEEecCCCCCC
Q 011891 124 AIEELPSP-IECLSALCVLDLGDCKSLKSLKLP-FDGLYSLTYLYLTDCAITE 174 (475)
Q Consensus 124 ~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~-~~~l~~L~~L~L~~~~l~~ 174 (475)
.++.+|.. +..+++|+.|++++|. +..+|.. +..+++|+.|++++|++..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence 66665553 4566666777776664 3344433 3567778888888887665
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=3.7e-14 Score=128.95 Aligned_cols=126 Identities=23% Similarity=0.256 Sum_probs=60.8
Q ss_pred CCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEc
Q 011891 64 SAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDL 143 (475)
Q Consensus 64 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L 143 (475)
.+++|++|++++|.++.+| .+..+++|++|++++|. +..+|..+..+++|++|++++|.++.+| .+..+++|+.|++
T Consensus 46 ~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp HTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEE
T ss_pred cCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEEC
Confidence 3444444444444444444 34444444444444432 2334443333444455555544444443 3444445555555
Q ss_pred CCCCCCCcccc--CCCCCCCCCEEEecCCCCCCc-ch----------hhCCCCCCceeEeccCCc
Q 011891 144 GDCKSLKSLKL--PFDGLYSLTYLYLTDCAITEL-PE----------SLGLLSSLEELYLERNNF 195 (475)
Q Consensus 144 ~~c~~l~~l~~--~~~~l~~L~~L~L~~~~l~~l-p~----------~l~~l~~L~~L~L~~n~l 195 (475)
++|. +..++. .+..+++|+.|++++|.+.+. |. .+..+++|+.|+ ++.+
T Consensus 123 ~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 123 SNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp SEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 5443 222221 234566666666666666543 21 256777788776 5544
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=4.1e-10 Score=99.93 Aligned_cols=89 Identities=28% Similarity=0.399 Sum_probs=50.9
Q ss_pred CCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCCCCCCccccC-CCCCCCCCEEEecCCCCCCcchh-hCCCCCCceeE
Q 011891 113 KSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLP-FDGLYSLTYLYLTDCAITELPES-LGLLSSLEELY 189 (475)
Q Consensus 113 ~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~l~~~-~~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~ 189 (475)
++|++|++++|.++.+ |..+..+++|+.|+|++|. +..+|.. +.++++|+.|+|++|+++.+|.. +..+++|+.|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 3444444444444433 2234444444444444443 2223322 35667777777777777776654 77788888888
Q ss_pred eccCCccccchHH
Q 011891 190 LERNNFERIPESI 202 (475)
Q Consensus 190 L~~n~l~~lp~~i 202 (475)
|++|.+...+..+
T Consensus 112 L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 112 LYNNPWDCECRDI 124 (174)
T ss_dssp CCSSCBCTTBGGG
T ss_pred eCCCCcccccccH
Confidence 8888877655433
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=5.5e-10 Score=98.65 Aligned_cols=86 Identities=28% Similarity=0.405 Sum_probs=50.3
Q ss_pred CCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCCCCCCcccc-CCCCCCCCCEEEecCCCCCCcch-hhCCCCCCceeE
Q 011891 113 KSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELY 189 (475)
Q Consensus 113 ~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~l~~-~~~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~ 189 (475)
++|++|++++|.++.+ |..+..+++|++|++++|.. ..++. .+.++++|+.|+|++|+++.+|. .+..+++|+.|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 3444444444444444 22344445555555554442 22222 34567777778888887777655 477788888888
Q ss_pred eccCCccccc
Q 011891 190 LERNNFERIP 199 (475)
Q Consensus 190 L~~n~l~~lp 199 (475)
|++|.+...+
T Consensus 109 L~~N~~~c~c 118 (170)
T 3g39_A 109 LLNNPWDCAC 118 (170)
T ss_dssp CCSSCBCTTB
T ss_pred eCCCCCCCCc
Confidence 8888775433
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=9.3e-10 Score=97.60 Aligned_cols=106 Identities=25% Similarity=0.329 Sum_probs=58.2
Q ss_pred cEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCC
Q 011891 69 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCK 147 (475)
Q Consensus 69 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~ 147 (475)
+.++++++.++++|..+. ++|++|+|++|......|..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 344555555555554432 4555555555443333344455566666666666666655554 3556666666666654
Q ss_pred CCCccccC-CCCCCCCCEEEecCCCCCCcch
Q 011891 148 SLKSLKLP-FDGLYSLTYLYLTDCAITELPE 177 (475)
Q Consensus 148 ~l~~l~~~-~~~l~~L~~L~L~~~~l~~lp~ 177 (475)
+..+|.. +..+++|+.|+|++|.+...+.
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred -cceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 3333332 5667777777777777665443
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=1.3e-09 Score=96.27 Aligned_cols=103 Identities=26% Similarity=0.342 Sum_probs=57.4
Q ss_pred cEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCC
Q 011891 69 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCK 147 (475)
Q Consensus 69 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~ 147 (475)
++++++++.++++|..+ .++|++|+|++|......|..+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 44555555555555443 25555555555433333344455566666666666666655553 3556666666666665
Q ss_pred CCCcccc-CCCCCCCCCEEEecCCCCCC
Q 011891 148 SLKSLKL-PFDGLYSLTYLYLTDCAITE 174 (475)
Q Consensus 148 ~l~~l~~-~~~~l~~L~~L~L~~~~l~~ 174 (475)
. ..++. .+..+++|+.|+|++|.+..
T Consensus 90 l-~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 90 L-KSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp C-CCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred c-CEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 3 33333 35667777777777776654
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=8.8e-11 Score=115.21 Aligned_cols=62 Identities=16% Similarity=0.275 Sum_probs=45.0
Q ss_pred CCCCCEEEecCCCCCCcch-hhCCCCCCceeEeccCCccccc-hHHhhcCCcc-cccccccccccccC
Q 011891 159 LYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIP-ESIIRLSKLS-SLLVSYCERLQSLP 223 (475)
Q Consensus 159 l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~-~L~l~~c~~l~~lp 223 (475)
+++|+.|+|++|+++.+|. .+..+++|+.|++.+| ++.++ .++..|.+|+ .+++.+ .++.++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~ 289 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIE 289 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEEC
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEc
Confidence 6778888888888887654 4677888888888876 66666 4567777887 777765 455554
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.95 E-value=2.1e-08 Score=101.02 Aligned_cols=217 Identities=13% Similarity=0.148 Sum_probs=146.8
Q ss_pred Ccccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCccc
Q 011891 5 NIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL 81 (475)
Q Consensus 5 ~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~l 81 (475)
+++.+.. .+.++ +|+.+++..+ ++.++. ..+.++ +|+.+.+.. .++.++. +..+++|+.+++.+|.++.+
T Consensus 123 ~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~-~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I 195 (401)
T 4fdw_A 123 SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGD-MAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKL 195 (401)
T ss_dssp TCCEECTTTTTTC-CCSEEECCTT--CCEECT-TTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEE
T ss_pred ccCEehHhhcccC-CccEEEeCCC--ccEECH-HhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEe
Confidence 4555653 45554 6888888753 666665 234443 688888875 5677765 77889999999998888888
Q ss_pred CcccCCCCCCcEEeeeCCCCCCcccc-ccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCcc-ccCCCCC
Q 011891 82 PSSIGCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSL-KLPFDGL 159 (475)
Q Consensus 82 p~~i~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l-~~~~~~l 159 (475)
+.....+.+|+.+.+.. .++.++. .+.++++|+.+++..+ ++.++.....-.+|+.+.+... +..+ ...+.++
T Consensus 196 ~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~~c 270 (401)
T 4fdw_A 196 PASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNG--VTNIASRAFYYC 270 (401)
T ss_dssp CTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETT--CCEECTTTTTTC
T ss_pred chhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCC--ccEEChhHhhCC
Confidence 87666678899988875 3666653 4667888998888763 5655543322378888888432 4444 3456788
Q ss_pred CCCCEEEecCCCCC-----Cc-chhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccccccccCCC---ccCc
Q 011891 160 YSLTYLYLTDCAIT-----EL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPKL---PCNL 229 (475)
Q Consensus 160 ~~L~~L~L~~~~l~-----~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L 229 (475)
++|+.+.+.++.+. .+ +..+..+++|+.+++. +.++.++ ..+..|.+|+.+.|..+ ++.++.- -.+|
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~~L 347 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNTGI 347 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSSCC
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCCCC
Confidence 88999988887665 33 3457788888888888 4476665 46677888888888543 5555431 1155
Q ss_pred ceecccc
Q 011891 230 YWLDAQH 236 (475)
Q Consensus 230 ~~L~i~~ 236 (475)
+.+++.+
T Consensus 348 ~~l~l~~ 354 (401)
T 4fdw_A 348 KEVKVEG 354 (401)
T ss_dssp CEEEECC
T ss_pred CEEEEcC
Confidence 5555544
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.90 E-value=4.2e-08 Score=98.79 Aligned_cols=200 Identities=15% Similarity=0.212 Sum_probs=149.1
Q ss_pred Ccccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccC
Q 011891 5 NIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELP 82 (475)
Q Consensus 5 ~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp 82 (475)
+++.+.. .+.++ +|+.+.+.. .++.++. ..+.+|++|+.+++.+ +.+..++. .....+|+.+.|..+ ++.++
T Consensus 145 ~i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~-~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~ 218 (401)
T 4fdw_A 145 GLKSIGDMAFFNS-TVQEIVFPS--TLEQLKE-DIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPVT-LKEIG 218 (401)
T ss_dssp TCCEECTTTTTTC-CCCEEECCT--TCCEECS-STTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCTT-CCEEC
T ss_pred CccEECHHhcCCC-CceEEEeCC--CccEehH-HHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCCc-hheeh
Confidence 3666654 35554 699999985 5666665 4578899999999988 46778877 223689999999854 77766
Q ss_pred c-ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCC-cccCCCCCcCEEEcCCCCCC----Ccc-ccC
Q 011891 83 S-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSL----KSL-KLP 155 (475)
Q Consensus 83 ~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l----~~l-~~~ 155 (475)
. .+.++++|+.+.+.+ .++.++.....-.+|+.+.+. +.++.++ ..+..+++|+.+.+.++... ..+ +..
T Consensus 219 ~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a 295 (401)
T 4fdw_A 219 SQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC 295 (401)
T ss_dssp TTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred hhHhhCCCCCCEEecCC--CccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence 5 677899999999986 467776554444789999994 4566664 46788999999999876532 122 345
Q ss_pred CCCCCCCCEEEecCCCCCCcc-hhhCCCCCCceeEeccCCccccc-hHHhhcCCccccccccc
Q 011891 156 FDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYC 216 (475)
Q Consensus 156 ~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c 216 (475)
+.++++|+.+.+.. +++.++ .++..+++|+.+.|..+ ++.+. .++..+ +|+.+.+.++
T Consensus 296 F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 296 LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 68899999999984 577764 46778899999999654 66665 467778 9999999887
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.88 E-value=8.3e-09 Score=101.67 Aligned_cols=96 Identities=22% Similarity=0.133 Sum_probs=51.8
Q ss_pred CCCccccccCCCCCCcEEEeeC-cCCccCCc-ccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchh
Q 011891 101 NLKTLPSSLCKLKSLEEICLTG-SAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPES 178 (475)
Q Consensus 101 ~l~~lp~~l~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~ 178 (475)
.++.+|. +..+++|++|+|++ |.++.+|. .+..+++|+.|+|++|......|..+.++++|+.|+|++|+++.+|..
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 3444444 44445555555553 55554442 344555555555555542222233445666677777777777776554
Q ss_pred hCCCCCCceeEeccCCccc
Q 011891 179 LGLLSSLEELYLERNNFER 197 (475)
Q Consensus 179 l~~l~~L~~L~L~~n~l~~ 197 (475)
+.....|+.|+|.+|.+..
T Consensus 99 ~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp TTCSCCCCEEECCSSCCCC
T ss_pred HcccCCceEEEeeCCCccC
Confidence 3333337777777777653
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.84 E-value=1.3e-10 Score=116.14 Aligned_cols=153 Identities=17% Similarity=0.141 Sum_probs=68.1
Q ss_pred CCCcEEEEeCCCCCCCCc-----C-cC-CCCCCcEEEccccCCcc--cCcccCCCCCCcEEeeeCCCCCCccc----ccc
Q 011891 43 NKLVILNLSGCSKLKSLP-----E-IS-SAGNIEKILLDGTAIEE--LPSSIGCLSRLLELNLGDCKNLKTLP----SSL 109 (475)
Q Consensus 43 ~~L~~L~L~~c~~l~~~p-----~-i~-~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~c~~l~~lp----~~l 109 (475)
+.|+.|+|++|. +.... . +. ..++|++|+|++|.+.. +......+++|++|+|++|.....-. ..+
T Consensus 72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 456667776653 32211 1 11 22566666666666542 11122234456666666653322111 111
Q ss_pred -CCCCCCcEEEeeCcCCcc-----CCcccCCCCCcCEEEcCCCCCCCc----cccCCCCCCCCCEEEecCCCCCC-----
Q 011891 110 -CKLKSLEEICLTGSAIEE-----LPSPIECLSALCVLDLGDCKSLKS----LKLPFDGLYSLTYLYLTDCAITE----- 174 (475)
Q Consensus 110 -~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~~----l~~~~~~l~~L~~L~L~~~~l~~----- 174 (475)
...++|++|++++|.++. ++..+...++|++|+|++|..... +...+...++|+.|+|++|.+++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 234556666666665542 223334444555555555542110 11112233445555555555443
Q ss_pred cchhhCCCCCCceeEeccCCcc
Q 011891 175 LPESLGLLSSLEELYLERNNFE 196 (475)
Q Consensus 175 lp~~l~~l~~L~~L~L~~n~l~ 196 (475)
++..+...++|++|+|++|.|+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 2233333444555555555443
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.83 E-value=1.2e-08 Score=100.54 Aligned_cols=99 Identities=19% Similarity=0.180 Sum_probs=51.2
Q ss_pred EEEeCCCCCCCCcCcCCCCCCcEEEccc-cCCcccCc-ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCC
Q 011891 48 LNLSGCSKLKSLPEISSAGNIEKILLDG-TAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAI 125 (475)
Q Consensus 48 L~L~~c~~l~~~p~i~~l~~L~~L~L~~-~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i 125 (475)
+++++.+.+..+|.+..+++|++|+|++ |.++.++. .++.+++|++|+|++|......|..+.++++|++|+|++|.+
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 3455433455555555555666666654 56665553 455666666666666533222333455666666666666666
Q ss_pred ccCCcccCCCCCcCEEEcCCC
Q 011891 126 EELPSPIECLSALCVLDLGDC 146 (475)
Q Consensus 126 ~~lp~~i~~l~~L~~L~L~~c 146 (475)
+.+|..+.....|+.|+|.+|
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSS
T ss_pred ceeCHHHcccCCceEEEeeCC
Confidence 655544322222444444433
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.80 E-value=4.8e-10 Score=111.88 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=111.3
Q ss_pred CCCCcEEEccccCCcc-----cCcccC-CCCCCcEEeeeCCCCCCccccc-cCCCCCCcEEEeeCcCCccC-----Cccc
Q 011891 65 AGNIEKILLDGTAIEE-----LPSSIG-CLSRLLELNLGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEEL-----PSPI 132 (475)
Q Consensus 65 l~~L~~L~L~~~~i~~-----lp~~i~-~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~~l-----p~~i 132 (475)
+++|+.|+|++|.+.. +...+. ..++|++|+|++|.....-... ...+++|++|++++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4789999999999873 222333 3479999999998643322212 22356899999999998732 2222
Q ss_pred -CCCCCcCEEEcCCCCCCC----ccccCCCCCCCCCEEEecCCCCCC-----cchhhCCCCCCceeEeccCCcc-----c
Q 011891 133 -ECLSALCVLDLGDCKSLK----SLKLPFDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFE-----R 197 (475)
Q Consensus 133 -~~l~~L~~L~L~~c~~l~----~l~~~~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~-----~ 197 (475)
...++|++|+|++|.... .++..+..+++|+.|+|++|.+++ ++..+...++|+.|+|++|.++ .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 346789999999997322 122233567889999999999886 4666778889999999999986 3
Q ss_pred cchHHhhcCCcccccccccc
Q 011891 198 IPESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 198 lp~~i~~l~~L~~L~l~~c~ 217 (475)
+...+...++|+.|+|++|.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 45566778999999999985
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=1.4e-08 Score=100.65 Aligned_cols=60 Identities=15% Similarity=0.275 Sum_probs=41.0
Q ss_pred CCCCCCEEEecCCCCCC-cchhh---CCCCCCceeEeccCCccc-----cchHHhhcCCcccccccccc
Q 011891 158 GLYSLTYLYLTDCAITE-LPESL---GLLSSLEELYLERNNFER-----IPESIIRLSKLSSLLVSYCE 217 (475)
Q Consensus 158 ~l~~L~~L~L~~~~l~~-lp~~l---~~l~~L~~L~L~~n~l~~-----lp~~i~~l~~L~~L~l~~c~ 217 (475)
.+++|+.|+|.+|.+.+ .+..+ ..+++|+.|+|+.|.++. ++..+..+++|+.|++++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 46778888888887764 22222 356788888888887753 44455677888888888774
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.62 E-value=2.7e-08 Score=98.65 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=78.3
Q ss_pred ccCCCCCcEEEEeCCCC---------CCCCcC-cCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccc
Q 011891 39 IQHLNKLVILNLSGCSK---------LKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSS 108 (475)
Q Consensus 39 ~~~l~~L~~L~L~~c~~---------l~~~p~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~ 108 (475)
+..+++|+.|.+.+... ...++. +..+++|+.|.|+++.-..++. + .+++|++|++..|.........
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 34566777777754211 011222 3356677777776653123333 2 2667777777665432222122
Q ss_pred c--CCCCCCcEEEeeCc--C------CccCCccc--CCCCCcCEEEcCCCCCCCccccC---CCCCCCCCEEEecCCCCC
Q 011891 109 L--CKLKSLEEICLTGS--A------IEELPSPI--ECLSALCVLDLGDCKSLKSLKLP---FDGLYSLTYLYLTDCAIT 173 (475)
Q Consensus 109 l--~~l~~L~~L~l~~~--~------i~~lp~~i--~~l~~L~~L~L~~c~~l~~l~~~---~~~l~~L~~L~L~~~~l~ 173 (475)
+ ..+++|++|+|+.+ . +..+...+ ..+++|+.|++.+|......+.. ...+++|+.|+|+.|.++
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 2 25667777766421 1 11121222 23566777777666533211111 124566777777766666
Q ss_pred C-----cchhhCCCCCCceeEeccCCcc
Q 011891 174 E-----LPESLGLLSSLEELYLERNNFE 196 (475)
Q Consensus 174 ~-----lp~~l~~l~~L~~L~L~~n~l~ 196 (475)
+ ++..+..+++|+.|+|++|.++
T Consensus 293 d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 293 DEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred hHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 5 2333345566777777766654
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.35 E-value=6e-06 Score=82.69 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=29.9
Q ss_pred cCCCCCCcEEEccccCCcccCc-ccCCCCCCcEEeeeCCCCCCcccc-ccCCCCCCcEEEe
Q 011891 62 ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICL 120 (475)
Q Consensus 62 i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l 120 (475)
+..+.+|+.+.+.++. ..++. .+.++.+|+.+.+..+ ++.++. .+.++..|+.+.+
T Consensus 158 F~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 158 FATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCC
T ss_pred hcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeec
Confidence 3456778888776542 33333 4566777887777542 333322 2334444444433
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.15 E-value=3.2e-05 Score=77.28 Aligned_cols=82 Identities=11% Similarity=0.119 Sum_probs=40.8
Q ss_pred cccCCC-CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCC--CCCCCCcC--cCCCCCCcEEEccccCCcccCc-cc
Q 011891 12 SVQHHG-KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGC--SKLKSLPE--ISSAGNIEKILLDGTAIEELPS-SI 85 (475)
Q Consensus 12 ~~~~l~-~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c--~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp~-~i 85 (475)
.+.+++ .|+.+.+-. .++.+.+ ..+.+|.+|+.+.+.++ ..++.++. +..+.+|+.+.+..+ ++.++. .+
T Consensus 58 aF~~~~~~L~sI~iP~--svt~Ig~-~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPD--TVTEIGS-NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTCCSCCCEEEECT--TCCEECT-TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred hccCCCCcCEEEEECC--CeeEEhH-HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 344553 477777754 3555554 34566777777776542 23444443 444555555444322 222222 23
Q ss_pred CCCCCCcEEeee
Q 011891 86 GCLSRLLELNLG 97 (475)
Q Consensus 86 ~~l~~L~~L~L~ 97 (475)
..+.+|+.+.+.
T Consensus 134 ~~c~~L~~i~lp 145 (394)
T 4gt6_A 134 HHCEELDTVTIP 145 (394)
T ss_dssp TTCTTCCEEECC
T ss_pred hhhccccccccc
Confidence 344455555443
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.13 E-value=6.9e-07 Score=79.74 Aligned_cols=58 Identities=21% Similarity=0.198 Sum_probs=36.1
Q ss_pred CCCCCEEEecCCCCCC-----cchhhCCCCCCceeEe--ccCCcc-----ccchHHhhcCCccccccccc
Q 011891 159 LYSLTYLYLTDCAITE-----LPESLGLLSSLEELYL--ERNNFE-----RIPESIIRLSKLSSLLVSYC 216 (475)
Q Consensus 159 l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L--~~n~l~-----~lp~~i~~l~~L~~L~l~~c 216 (475)
.++|+.|+|++|.+++ +...+...++|++|+| ++|.++ .+...+...++|++|++++|
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3556677777776665 4455666667777777 667664 24445555666666666665
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=1.9e-06 Score=75.64 Aligned_cols=84 Identities=13% Similarity=0.129 Sum_probs=40.6
Q ss_pred CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC--cCcCCC----CCCcEEEcccc-CCcc-cCcccCCCC
Q 011891 18 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL--PEISSA----GNIEKILLDGT-AIEE-LPSSIGCLS 89 (475)
Q Consensus 18 ~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~--p~i~~l----~~L~~L~L~~~-~i~~-lp~~i~~l~ 89 (475)
+|+.||+++|. ++... +..+..+++|+.|+|++|..+++- ..++.+ ++|++|+|++| .|+. --..+..++
T Consensus 62 ~L~~LDLs~~~-Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCC-CCGGG-GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCC-ccHHH-HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 46666666664 33321 233456666666666666555431 113332 24555555554 2441 001233455
Q ss_pred CCcEEeeeCCCCCC
Q 011891 90 RLLELNLGDCKNLK 103 (475)
Q Consensus 90 ~L~~L~L~~c~~l~ 103 (475)
+|++|++++|..++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 55555555555444
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.04 E-value=1.3e-06 Score=78.02 Aligned_cols=111 Identities=15% Similarity=0.124 Sum_probs=64.0
Q ss_pred CCCCCCcEEeeeCCCCCC-----ccccccCCCCCCcEEEeeCcCCcc-----CCcccCCCCCcCEEEcCCCCCCCc----
Q 011891 86 GCLSRLLELNLGDCKNLK-----TLPSSLCKLKSLEEICLTGSAIEE-----LPSPIECLSALCVLDLGDCKSLKS---- 151 (475)
Q Consensus 86 ~~l~~L~~L~L~~c~~l~-----~lp~~l~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~~---- 151 (475)
...++|++|+|++|..+. .+...+...++|++|++++|.+.. +...+...++|++|+|++|..-..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 344445555555442222 123334445555555655555541 223333445566666666653221
Q ss_pred cccCCCCCCCCCEEEe--cCCCCCC-----cchhhCCCCCCceeEeccCCcc
Q 011891 152 LKLPFDGLYSLTYLYL--TDCAITE-----LPESLGLLSSLEELYLERNNFE 196 (475)
Q Consensus 152 l~~~~~~l~~L~~L~L--~~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~ 196 (475)
+...+...++|+.|+| ++|.+++ +...+...++|++|+|++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2223445667889999 7888886 4566677789999999999875
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.97 E-value=7e-05 Score=74.80 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=38.9
Q ss_pred cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEcc
Q 011891 12 SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLD 74 (475)
Q Consensus 12 ~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~ 74 (475)
.+..+.+|+.+.|.. .++.+++ ..+.+|++|+.+++.. .++.++. +..+.+|+.+.+.
T Consensus 66 AF~~c~~L~~i~lp~--~i~~I~~-~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS--TVREIGE-FAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TTTTCTTEEEEECCT--TCCEECT-TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred HhhCCCCceEEEeCC--CccCcch-hHhhCCCCCcEEEeCC--CceEccchhhcccccchhhccc
Confidence 466788888888864 4666665 4567888888888864 3555554 5566666655443
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.97 E-value=5.8e-06 Score=72.59 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=8.0
Q ss_pred hhcCCcccccccccccc
Q 011891 203 IRLSKLSSLLVSYCERL 219 (475)
Q Consensus 203 ~~l~~L~~L~l~~c~~l 219 (475)
.++++|++|+|++|+.+
T Consensus 136 ~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp GGCTTCCEEEEESCTTC
T ss_pred hcCCCCCEEECCCCCCC
Confidence 34445555555544433
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.79 E-value=0.00073 Score=67.35 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=42.9
Q ss_pred cCCCCCcCEEEcCCCCCCCcc-ccCCCCCCCCCEEEecCCCCCCcc-hhhCCCCCCceeEeccCCccccc-hHHhhcCCc
Q 011891 132 IECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKL 208 (475)
Q Consensus 132 i~~l~~L~~L~L~~c~~l~~l-~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L 208 (475)
+..+.+|+.+.+.... ..+ ...+.++.+|+.+.+. ..++.++ ..+..+.+|+.++|..+ ++.+. .++..|.+|
T Consensus 261 F~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccEEeccccc--ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 3445566666654321 111 1234566777777774 3455543 34556677777777543 44443 345666666
Q ss_pred cccccc
Q 011891 209 SSLLVS 214 (475)
Q Consensus 209 ~~L~l~ 214 (475)
+.+.|.
T Consensus 337 ~~i~ip 342 (394)
T 4gt6_A 337 ERIAIP 342 (394)
T ss_dssp CEEEEC
T ss_pred CEEEEC
Confidence 666654
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.64 E-value=0.002 Score=63.64 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=35.1
Q ss_pred CCCCCCCEEEecCCCCCCcc-hhhCCCCCCceeEeccCCccccc-hHHhhcCCccccccc
Q 011891 157 DGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVS 214 (475)
Q Consensus 157 ~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~ 214 (475)
.++.+|+.+.+... +..++ ..+..+++|+.+.+.++.++.++ ..+.+|.+|+.+.|.
T Consensus 260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 45566666666432 44433 24566777777777777776665 456667777776663
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.57 E-value=0.0025 Score=62.93 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=28.8
Q ss_pred CCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccc
Q 011891 157 DGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSY 215 (475)
Q Consensus 157 ~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~ 215 (475)
.++..|+.+.+..+ ++.+ ...+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+.+
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~ 295 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDN 295 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECC
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccc
Confidence 34455555555443 3333 223445566666666432 33443 3445566666666643
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.54 E-value=8.5e-05 Score=69.90 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=16.5
Q ss_pred CCCCCCEEEecCCCCCCcchhhCCCC--CCceeEeccCCc
Q 011891 158 GLYSLTYLYLTDCAITELPESLGLLS--SLEELYLERNNF 195 (475)
Q Consensus 158 ~l~~L~~L~L~~~~l~~lp~~l~~l~--~L~~L~L~~n~l 195 (475)
.+++|+.|+|++|.+.++. .+..+. +|++|+|++|.+
T Consensus 194 ~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 194 KAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcC
Confidence 4445555555555554431 122222 455555555554
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.37 E-value=9.7e-05 Score=69.53 Aligned_cols=77 Identities=27% Similarity=0.312 Sum_probs=41.1
Q ss_pred CCCCCcEEEccccCCccc---CcccCCCCCCcEEeeeCCCCCCccccccCCCC--CCcEEEeeCcCCcc-CCc-------
Q 011891 64 SAGNIEKILLDGTAIEEL---PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLK--SLEEICLTGSAIEE-LPS------- 130 (475)
Q Consensus 64 ~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~--~L~~L~l~~~~i~~-lp~------- 130 (475)
.+++|+.|+|++|.|..+ +..+..+++|+.|+|++|. +..+. .+..+. +|++|++++|.+.. +|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 455666666666665543 2344456666666666643 22221 222233 66777777766652 331
Q ss_pred ccCCCCCcCEEE
Q 011891 131 PIECLSALCVLD 142 (475)
Q Consensus 131 ~i~~l~~L~~L~ 142 (475)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245566666665
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.99 E-value=0.004 Score=55.45 Aligned_cols=33 Identities=24% Similarity=0.153 Sum_probs=17.1
Q ss_pred CCCCEEEecCCCCCC-----cchhhCCCCCCceeEecc
Q 011891 160 YSLTYLYLTDCAITE-----LPESLGLLSSLEELYLER 192 (475)
Q Consensus 160 ~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~ 192 (475)
+.|+.|+|++|.|.+ +-+.+..-+.|+.|+|++
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 345555555555554 334444445555555554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.55 E-value=0.015 Score=48.13 Aligned_cols=35 Identities=34% Similarity=0.397 Sum_probs=18.2
Q ss_pred CCCEEEecCCCCCCcchh-hCCCCCCceeEeccCCc
Q 011891 161 SLTYLYLTDCAITELPES-LGLLSSLEELYLERNNF 195 (475)
Q Consensus 161 ~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~L~~n~l 195 (475)
+|+.|+|++|+|+.+|.. +..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 355555555555554432 34455555555555544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.40 E-value=0.0072 Score=53.82 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=54.8
Q ss_pred CCCcCEEEcCCCCCCCc-----cccCCCCCCCCCEEEecCCCCCC-----cchhhCCCCCCceeEeccCCcc-----ccc
Q 011891 135 LSALCVLDLGDCKSLKS-----LKLPFDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFE-----RIP 199 (475)
Q Consensus 135 l~~L~~L~L~~c~~l~~-----l~~~~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~-----~lp 199 (475)
-+.|++|+|+++..+.. +...+..-..|+.|+|++|.+.+ +...+..-+.|+.|+|++|.|. .+-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 34566666665422221 11122344678889999998886 5566677788999999999885 344
Q ss_pred hHHhhcCCccccccccc
Q 011891 200 ESIIRLSKLSSLLVSYC 216 (475)
Q Consensus 200 ~~i~~l~~L~~L~l~~c 216 (475)
..+..-..|+.|+|++|
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 55666678888888765
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.11 E-value=0.075 Score=43.77 Aligned_cols=50 Identities=24% Similarity=0.467 Sum_probs=25.4
Q ss_pred EEEEeCCCCCC--CCcC-cCCCCCCcEEEccccCCcccCcc-cCCCCCCcEEeeeCC
Q 011891 47 ILNLSGCSKLK--SLPE-ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELNLGDC 99 (475)
Q Consensus 47 ~L~L~~c~~l~--~~p~-i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c 99 (475)
.++.++ ..++ .+|. +. ++|++|+|++|.|+.+|.. +..+++|++|+|.+|
T Consensus 12 ~v~Cs~-~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCS-SCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCC-CCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 344444 3444 4553 22 3466666666666665542 344555555555554
No 165
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=42.98 E-value=12 Score=20.37 Aligned_cols=15 Identities=40% Similarity=0.486 Sum_probs=11.3
Q ss_pred ccccccCCCCcccCC
Q 011891 460 NRKEVEEPHPKRLKY 474 (475)
Q Consensus 460 ~~~~~~~~~~~~~~~ 474 (475)
+-||.|||-+||-++
T Consensus 13 ewdedeepprkrkrl 27 (28)
T 3ukw_C 13 EWDEDEEPPRKRKRL 27 (28)
T ss_dssp CCCGGGSCCSSCCCC
T ss_pred ccccccCcchhhhcc
Confidence 447888998888664
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.43 E-value=1.2e+02 Score=22.96 Aligned_cols=13 Identities=0% Similarity=-0.033 Sum_probs=6.4
Q ss_pred ccCCCCCcEEEEe
Q 011891 39 IQHLNKLVILNLS 51 (475)
Q Consensus 39 ~~~l~~L~~L~L~ 51 (475)
+.+|.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP 28 (100)
T 2lz0_A 16 FAGNTVIREITVQ 28 (100)
T ss_dssp TTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcC
Confidence 4444555555554
Done!