BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011892
(475 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 358 SLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGST-PLKFHL 416
S + T +GL + L G G A G+ +SV YTG L +GQ FDS+ P F L
Sbjct: 97 STVVTTESGLKYEDLTEG--SGAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFAFVL 153
Query: 417 GGKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
GG VI+G + G++GM VG RRL IPP LGYG+ G + IPP + L F+V+L+ V
Sbjct: 154 GGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARG-AAGVIPPNATLVFEVELLDV 209
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 358 SLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGST-PLKFHL 416
S + T +GL + L G G A G+ +SV YTG L +GQ FDS+ P +F L
Sbjct: 97 STVVTTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFEFVL 153
Query: 417 GGKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
GG VI+G + G++GM VG RRL IPP LGYG+ G IPP + L F+V+L+ V
Sbjct: 154 GGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGV-IPPNATLVFEVELLDV 209
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 68/117 (58%), Gaps = 5/117 (4%)
Query: 358 SLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGST-PLKFHL 416
S + T +GL + L G G A G+ +SV YTG L +GQ FDS+ P F L
Sbjct: 97 STIVTTESGLKYEDLTEG--SGAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFAFVL 153
Query: 417 GGKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
GG VI+G + G++GM VG RRL IPP LGYG+ G IPP + L F+V+L+ V
Sbjct: 154 GGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGV-IPPNATLVFEVELLDV 209
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 68/117 (58%), Gaps = 5/117 (4%)
Query: 358 SLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGST-PLKFHL 416
S + T +GL + L G G A G+ +SV YTG L +GQ FDS+ P F L
Sbjct: 97 STVVTTESGLKYEDLTEG--SGAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFAFVL 153
Query: 417 GGKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
GG VI+G + G++GM VG RRL IPP LGYG+ G IPP + L F+V+L+ V
Sbjct: 154 GGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGV-IPPNATLVFEVELLDV 209
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 358 SLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLG-STPLKFHL 416
S + T +GL + L G G A G+ +SV YTG L + GQ FDS+ + P F L
Sbjct: 1 STVVTTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLTD-GQKFDSSKDRNDPFAFVL 57
Query: 417 GGKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
GG VI+G + G++GM VG RRL IPP LGYG+ G IPP + L F+V+L+ V
Sbjct: 58 GGGHVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGV-IPPNATLVFEVELLDV 113
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 73.6 bits (179), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 362 TLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKE 420
T +GL + L G G A G+ +SV YTG L + GQ FDS+ + P F LGG
Sbjct: 25 TTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGM 81
Query: 421 VIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
VI+G + G++GM VG RRL IPP LGYG+ G IPP + L F+V+L+ V
Sbjct: 82 VIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGV-IPPNATLVFEVELLDV 133
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 72.8 bits (177), Expect = 3e-13, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 362 TLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKE 420
T +GL + L G G A G+ +SV YTG L + GQ FDS+ + P F LGG
Sbjct: 9 TTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGM 65
Query: 421 VIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
VI+G + G++GM VG RRL IPP LGYG+ G IPP + L F+V+L+ V
Sbjct: 66 VIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGV-IPPNATLVFEVELLDV 117
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 71.6 bits (174), Expect = 8e-13, Method: Composition-based stats.
Identities = 40/92 (43%), Positives = 59/92 (64%), Gaps = 5/92 (5%)
Query: 385 GKKISVLYTGKLKENGQVFDS---NLGSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLL 441
G + V Y G L+++G +F S + P+ F LG E ++G + GL+GM VGEKR+L+
Sbjct: 32 GDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLI 91
Query: 442 IPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
IPP+LGYG G IPP S L F++DL+++
Sbjct: 92 IPPALGYGKEG--KGKIPPESTLIFNIDLLEI 121
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 67/117 (57%), Gaps = 5/117 (4%)
Query: 358 SLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGST-PLKFHL 416
S + T +GL + L G G A G+ +SV YTG L +GQ F S+ P F L
Sbjct: 97 STVVTTESGLKYEDLTEG--SGAEARAGQTVSVHYTGWLT-DGQKFGSSKDRNDPFAFVL 153
Query: 417 GGKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
GG VI+G + G++GM VG RRL IPP LGYG+ G IPP + L F+V+L+ V
Sbjct: 154 GGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGV-IPPNATLVFEVELLDV 209
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 65/114 (57%), Gaps = 10/114 (8%)
Query: 363 LPNGLVIQKL--GTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNL-GSTPLKFHLGGK 419
LP+GLV Q++ G+GK + A K V YTG+L+ +G VFDS+ P F
Sbjct: 35 LPSGLVFQRIARGSGK---RAPAIDDKCEVHYTGRLR-DGTVFDSSRERGKPTTFRP--N 88
Query: 420 EVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
EVI+G L+ M G++ RL IP L YG G IPPYS LEFDV+L+ +
Sbjct: 89 EVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGM-IPPYSPLEFDVELISI 141
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 56/85 (65%), Gaps = 3/85 (3%)
Query: 392 YTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGS 450
YTGKL E+G FDS+L + P F LG +VI+G + GL GM GEKR+L+IP LGYG
Sbjct: 16 YTGKL-EDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGE 74
Query: 451 GGDDSKNIPPYSWLEFDVDLVKVHR 475
G K IP + L F+V+L+K+ R
Sbjct: 75 RGAPPK-IPGGATLVFEVELLKIER 98
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 66.2 bits (160), Expect = 4e-11, Method: Composition-based stats.
Identities = 53/134 (39%), Positives = 66/134 (49%), Gaps = 19/134 (14%)
Query: 349 ENSSAEGKLSLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLG 408
E +S E +S P+GL G G A G+ I Y GKL ENG+VFDS+
Sbjct: 1 ETTSCEFSVS-----PSGLAFCDKVVGY--GPEAVKGQLIKAHYVGKL-ENGKVFDSSYN 52
Query: 409 -STPLKFHLGGKEVIEGLNVGLEG------MHVGEKRRLLIPPSLGYGSGGDDSKN---- 457
PL F +G EVI+G + G+ G M G KR L IPP L YG G K
Sbjct: 53 RGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCL 112
Query: 458 IPPYSWLEFDVDLV 471
IPP S L FD++ +
Sbjct: 113 IPPASVLLFDIEYI 126
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNL-GSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIP 443
G+ V YTG L E+G+ FDS+ + P KF LG +EVI GL G+ M VG++ +L I
Sbjct: 19 GQTCVVHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGLEEGVAQMSVGQRAKLTIS 77
Query: 444 PSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
P YG+ G IPP++ L FDV+L+K+
Sbjct: 78 PDYAYGATGHPG-IIPPHATLVFDVELLKL 106
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIP 443
G +++ YTG L ENGQ FDS++ +P + ++G +VI+G +VG+ + VGEK RL IP
Sbjct: 25 GDLVTIHYTGTL-ENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIP 83
Query: 444 PSLGYGSGGDDSKNIPPYSWLEFDVDLVKVH 474
YG G IPP S L FDV+L+KV+
Sbjct: 84 GPYAYGPRGFPGL-IPPNSTLVFDVELLKVN 113
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNL-GSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIP 443
G+ V YTG L E+G+ FDS+ + P KF LG +EVI G G+ M VG++ +L I
Sbjct: 19 GQTCVVHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLTIS 77
Query: 444 PSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
P YG+ G IPP++ L FDV+L+K+
Sbjct: 78 PDYAYGATGHPG-IIPPHATLVFDVELLKL 106
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 6/110 (5%)
Query: 366 GLVIQKLGTGKPDGKV-AAPGKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIE 423
G+ ++ + G DG+ G+ V YTG L E+G+ FDS+ + P KF LG +EVI
Sbjct: 1 GVQVETISPG--DGRTFPKAGQTCVVHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIR 57
Query: 424 GLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
G G+ M VG++ +L I P YG+ G IPP++ L FDV+L+K+
Sbjct: 58 GWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATLVFDVELLKL 106
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIP 443
G+ V YTG L E+G+ FDS+ + P KF LG +EVI G G+ M VG++ +L I
Sbjct: 19 GQTCVVHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKLTIS 77
Query: 444 PSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
P YG+ G IPP++ L FDV+L+K+
Sbjct: 78 PDYAYGATGHPGI-IPPHATLVFDVELLKL 106
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNL-GSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIP 443
G+ V YTG L E+G+ FDS+ + P KF LG +EVI G G+ M VG++ +L I
Sbjct: 21 GQTCVVHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTIS 79
Query: 444 PSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
P YG+ G IPP++ L FDV+L+K+
Sbjct: 80 PDYAYGATGHPG-IIPPHATLVFDVELLKL 108
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 63.2 bits (152), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIP 443
G+ V YTG L E+G+ FDS+ + P KF LG +EVI G G+ M VG++ +L I
Sbjct: 19 GQTCVVHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTIS 77
Query: 444 PSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
P YG+ G IPP++ L FDV+L+K+
Sbjct: 78 PDYAYGATGHPGI-IPPHATLVFDVELLKL 106
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 63.2 bits (152), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIP 443
G+ V YTG L E+G+ FDS+ + P KF LG +EVI G G+ M VG++ +L I
Sbjct: 19 GQTCVVHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTIS 77
Query: 444 PSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
P YG+ G IPP++ L FDV+L+K+
Sbjct: 78 PDYAYGATGHPGI-IPPHATLVFDVELLKL 106
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 63.2 bits (152), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIP 443
G+ V YTG L E+G+ FDS+ + P KF LG +EVI G G+ M VG++ +L I
Sbjct: 19 GQTCVVHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKLTIS 77
Query: 444 PSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
P YG+ G IPP++ L FDV+L+K+
Sbjct: 78 PDYAYGATGHPGI-IPPHATLVFDVELLKL 106
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 62.0 bits (149), Expect = 7e-10, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIP 443
G+ V YTG L E+G+ FDS+ + P KF LG +EVI G G+ M VG++ +L I
Sbjct: 19 GQTCVVHYTGML-EDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTIS 77
Query: 444 PSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
P YG+ G IPP++ L FDV+L+K+
Sbjct: 78 PDYAYGATGVPGI-IPPHATLVFDVELLKL 106
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIPP 444
G+ V YTG L++ +V S + P KF LG +EVI G G+ M VG++ +L I P
Sbjct: 19 GQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISP 78
Query: 445 SLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
YG+ G IPP++ L FDV+L+K+
Sbjct: 79 DYAYGATGHPG-IIPPHATLVFDVELLKL 106
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 346 MVTENSSAEGKLSLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDS 405
M T + +G S+ L ++ G KP GKK++V Y G+ + Q S
Sbjct: 9 MGTLEAQTQGPGSMSAQLEKKVLTPGDGVTKPQA-----GKKVTVHYDGRFPDGKQFDSS 63
Query: 406 NLGSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLE 465
P +F LG EVI+G + G+ M +GEK IP L YG G IPP + L
Sbjct: 64 RSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYPPV-IPPKATLV 122
Query: 466 FDVDLVKV 473
F+V+L+ V
Sbjct: 123 FEVELLAV 130
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 379 GKVAAPGKKISVLYTGKLKENGQVFDSNLGST-PLKFHLGGKEVIEGLNVGLEGMHVGEK 437
G A G+ +SV YTG L +GQ FDS+ P F LGG VI+G + G++GM VG
Sbjct: 20 GAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGV 78
Query: 438 RRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
RRL IPP LGY G IPP + L F+V+L+ V
Sbjct: 79 RRLTIPPQLGY-GAGGAGGVIPPNATLVFEVELLDV 113
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIPP 444
G+ V YTG L++ ++ S + P KF LG +EVI G G+ M VG++ +L I P
Sbjct: 19 GQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISP 78
Query: 445 SLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
YG+ G IPP++ L FDV+L+K+
Sbjct: 79 DYAYGATGHPG-IIPPHATLVFDVELLKL 106
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSN-LGSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIP 443
G+ V YTG L + G+VFDS+ P +F +G EVI G + G+ M VG++ +L+
Sbjct: 20 GQVAVVHYTGTLAD-GKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVGQRAKLVCS 78
Query: 444 PSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
P YGS G IPP + L FDV+L++V
Sbjct: 79 PDYAYGSRGHPGV-IPPNATLTFDVELLRV 107
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNL-GSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIP 443
G+ V YTG L E+G+ FDS+ + P KF LG +EVI G G+ M VG++ +L I
Sbjct: 19 GQTCVVHYTGML-EDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLTIS 77
Query: 444 PSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
P YG+ G IPP + L FDV+L+K+
Sbjct: 78 PDYAYGATGHPG-IIPPNATLIFDVELLKL 106
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLGST--------PLKFHLGGKEVIEGLNVGLEGMHVGE 436
G + YTG L ++G VFD+N+ ++ PL F +G +VI G + L M GE
Sbjct: 20 GDVVHCWYTGTL-QDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE 78
Query: 437 KRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
K RL I P YG G IPP + L F+V+LV +
Sbjct: 79 KARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI 115
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 388 ISVLYTGKLKENGQVFDSNLGST--------PLKFHLGGKEVIEGLNVGLEGMHVGEKRR 439
+ YTG L +G VFD+N+ ++ PL F +G +VI G + L M GEK R
Sbjct: 26 VHCWYTGTL-PDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR 84
Query: 440 LLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
L I P YG G IPP + L F+V+LV +
Sbjct: 85 LEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNL-GSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIP 443
G+ V YTG L +NG+ FDS+ + P KF +G +EVI+G G M +G++ +L
Sbjct: 19 GQTCVVHYTGML-QNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCT 77
Query: 444 PSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
P + YG+ G IPP + L FDV+L+ +
Sbjct: 78 PDVAYGATGHPGV-IPPNATLIFDVELLNL 106
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
Query: 383 AP--GKKISVLYTGKLKENGQVFDSNL-GSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRR 439
AP G +++V Y GKL+ +G+VFDS+ + P KFHLG EVI+G ++ + M EK
Sbjct: 32 APKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEKCS 91
Query: 440 LLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLV 471
+ + GYG G ++IP S L F+++L+
Sbjct: 92 VRLDSKYGYGEEG-CGESIPGNSVLIFEIELI 122
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 381 VAAPGKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEGMHVGEKRR 439
+ G +++V Y GKL+ G+VFDS+ + P KFHL EVI+G ++ + M EK
Sbjct: 33 IPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCL 92
Query: 440 LLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLV 471
+ I GYG G ++IP S L F+++L+
Sbjct: 93 VRIESMYGYGDEG-CGESIPGNSVLLFEIELL 123
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 381 VAAPGKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEGMHVGEKRR 439
+ G +++V Y GKL+ G+VFDS+ + P KFHL EVI+G ++ + M EK
Sbjct: 33 IPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCL 92
Query: 440 LLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLV 471
+ I GYG G ++IP S L F+++L+
Sbjct: 93 VRIESMYGYGDEG-CGESIPGNSVLLFEIELL 123
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 368 VIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGST-PLKFHLGGKEVIEGLN 426
VI++ GTG + G ++ V YTG L +G FDS+L F LG EVI+ +
Sbjct: 35 VIKREGTGTETPMI---GDRVFVHYTGWLL-DGTKFDSSLDRKDKFSFDLGKGEVIKAWD 90
Query: 427 VGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
+ + M VGE R+ P YGS G K IPP + L F+V+L +
Sbjct: 91 IAVATMKVGELCRITCKPEYAYGSAGSPPK-IPPNATLVFEVELFEF 136
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLGST-PLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIP 443
G ++ V YTG L +G+ FDS+ KF LG +VI+G + G++ M GE IP
Sbjct: 46 GDEVEVHYTGTLL-DGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIP 104
Query: 444 PSLGYGSGGDDSKNIPPYSWLEFDVDLV 471
P L YG G IP + L+FDV+L+
Sbjct: 105 PELAYGESG-SPPTIPANATLQFDVELL 131
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 385 GKKISVLYTGKLKENGQVF--DSNLGSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLI 442
G ++V TGKL ++G VF + P +F + VIEGL+ + M GE + I
Sbjct: 279 GAVVTVKITGKL-QDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTI 337
Query: 443 PPSLGYGSGGDDSKN---IPPYSWLEFDVDLV 471
PP YGS +SK +PP S + ++V+LV
Sbjct: 338 PPEYAYGS--TESKQDAIVPPNSTVIYEVELV 367
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLGST-PLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIP 443
G ++ V YTG L +G+ FDS+ KF LG +VI+G + G++ M GE IP
Sbjct: 30 GDEVEVHYTGTLL-DGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIP 88
Query: 444 PSLGYGSGGDDSKNIPPYSWLEFDVDLV 471
P L YG G IP + L+FDV+L+
Sbjct: 89 PELAYGESG-SPPTIPANATLQFDVELL 115
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 385 GKKISVLYTGKLKENGQVF--DSNLGSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLI 442
G ++V TGKL ++G VF + P +F + VIEGL+ + M GE + I
Sbjct: 263 GAVVTVKITGKL-QDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTI 321
Query: 443 PPSLGYGSGGDDSKN---IPPYSWLEFDVDLV 471
PP YGS +SK +PP S + ++V+LV
Sbjct: 322 PPEYAYGS--TESKQDAIVPPNSTVIYEVELV 351
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 360 LRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGK 419
++T GLV Q + GK G+ + V Y G L + + +S PL F L G
Sbjct: 116 VKTSSTGLVYQVVEAGK--GEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG- 172
Query: 420 EVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKVH 474
VI G GL+ + G K +L+IPP L YG G IPP S L FDV+L+ V
Sbjct: 173 -VIPGWTEGLKNIKKGGKIKLVIPPELAYGKAG--VPGIPPNSTLVFDVELLDVK 224
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 360 LRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGK 419
++T GLV Q + GK G+ + V Y G L + + +S PL F L G
Sbjct: 116 VKTSSTGLVYQVVEAGK--GEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG- 172
Query: 420 EVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKVH 474
VI G GL+ + G K +L+IPP L YG G IPP S L FDV+L+ V
Sbjct: 173 -VIPGWTEGLKNIKKGGKIKLVIPPELAYGKAG--VPGIPPNSTLVFDVELLDVK 224
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 368 VIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGST-PLKFHLGGKEVIEGLN 426
VI++ GTG ++ G ++ V YTG L +G FDS+L F LG EVI+ +
Sbjct: 56 VIKREGTGT---EMPMIGDRVFVHYTGWLL-DGTKFDSSLDRKDKFSFDLGKGEVIKAWD 111
Query: 427 VGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKV 473
+ + M VGE + P YGS G K IPP + L F+V+L +
Sbjct: 112 IAIATMKVGEVCHITCKPEYAYGSAGSPPK-IPPNATLVFEVELFEF 157
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 412 LKFHLGGKEVIE---GLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDV 468
L+F +G E ++ GL ++ M GE + + PS +GS G + IPP + L++++
Sbjct: 208 LRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYEL 267
Query: 469 DL 470
L
Sbjct: 268 HL 269
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 14/119 (11%)
Query: 360 LRTLPNGLVIQKL--GTG-KPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHL 416
++ L +G+++ +L GTG KPD ++ V Y G+L +G++FD + + P F L
Sbjct: 112 VKELADGILMTELTPGTGPKPDAN-----GRVEVRYVGRLP-DGKIFDQS--TQPQWFRL 163
Query: 417 GGKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKVHR 475
VI G L+ M G K RL+IP YG+ G I P++ L F+++L+ V +
Sbjct: 164 --DSVISGWTSALQNMPTGAKWRLVIPSDQAYGAEG-AGDLIDPFTPLVFEIELIAVSQ 219
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 368 VIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLN 426
VI++ GTG ++ G ++ V YTG L + G FDS+L F LG EVI+ +
Sbjct: 40 VIKREGTGT---EMPMIGDRVFVHYTGWLLD-GTKFDSSLDRKDKFSFDLGKGEVIKAWD 95
Query: 427 VGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDL 470
+ + M VGE + P YGS G K IPP + L F+V+L
Sbjct: 96 IAIATMKVGEVCHITCKPEYAYGSAGSPPK-IPPNATLVFEVEL 138
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 368 VIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLN 426
VI++ GTG ++ G ++ V YTG L + G FDS+L F LG EVI+ +
Sbjct: 36 VIKREGTGT---EMPMIGDRVFVHYTGWLLD-GTKFDSSLDRKDKFSFDLGKGEVIKAWD 91
Query: 427 VGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDL 470
+ + M VGE + P YGS G K IPP + L F+V+L
Sbjct: 92 IAIATMKVGEVCHITCKPEYAYGSAGSPPK-IPPNATLVFEVEL 134
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 379 GKVAAPGKKISVLYTGKLKENGQVFDSN-LGSTPLKFHLGGKEVIEGLNVGLEGMHVGEK 437
G + AP + V Y+G L+ + FDSN TP LG + G+ +GL M GE
Sbjct: 38 GDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGEL 97
Query: 438 RRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLV 471
R L P+ YG+ G IPP + + F+++L+
Sbjct: 98 ARFLFKPNYAYGTLGCPPL-IPPNTTVLFEIELL 130
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIP 443
G + V Y G L ENG FDS+ F+LG VI+G ++G+ M GE I
Sbjct: 33 GTTVKVHYVGTL-ENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR 91
Query: 444 PSLGYGSGGDDSKNIPPYSWLEFDVDLV 471
GYG G K IP + L F+V+L
Sbjct: 92 SDYGYGDAGSPPK-IPGGATLIFEVELF 118
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 15/80 (18%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLGST--------------PLKFHLGGKEVIEGLNVGLE 430
G KI V Y GKL E+G VFD+++ PL+F +G ++I+G +
Sbjct: 5 GVKIKVDYIGKL-ESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVL 63
Query: 431 GMHVGEKRRLLIPPSLGYGS 450
M VG+++ + IP YG+
Sbjct: 64 DMEVGDEKTVKIPAEKAYGN 83
>pdb|2KR7|A Chain A, Solution Structure Of Helicobacter Pylori Slyd
Length = 151
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 387 KISVLYTGKLKENGQ--VFDSNLGSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIPP 444
K + L +++E G V DSN+ PL+F +G ++I GL + +GE ++I P
Sbjct: 10 KQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAP 69
Query: 445 SLGYG 449
YG
Sbjct: 70 EEAYG 74
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 360 LRTLPNGLVIQK-LGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGSTP-LKFHLG 417
L L NGL+ +K L G P G+ ++V L ENG + + P L F LG
Sbjct: 37 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSL-ENG----TRVQEEPELVFTLG 91
Query: 418 GKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDL 470
+VI+ L++ + M VGE + YG G S IPP++ L +V L
Sbjct: 92 DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTL 144
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 373 GTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIE---GLNVGL 429
G KP+ G + V G K+ ++FD L+F +G E ++ GL +
Sbjct: 37 GYAKPN-----EGAIVEVALEGYYKD--KLFDQR----ELRFEIGEGENLDLPYGLERAI 85
Query: 430 EGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDL 470
+ M GE + + PS +GS G + IPP + L++++ L
Sbjct: 86 QRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHL 126
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 360 LRTLPNGLVIQK-LGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGSTP-LKFHLG 417
L L NGL+ +K L G P G+ ++V L ENG + + P L F LG
Sbjct: 11 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSL-ENG----TRVQEEPELVFTLG 65
Query: 418 GKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDL 470
+VI+ L++ + M VGE + YG G S IPP++ L +V L
Sbjct: 66 DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTL 118
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 411 PLKFHLGG-KEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDS-KNIPPYSWLEFDV 468
P++ LG K+ + GL +G+ M GE+ + + L YG G+ S N+PP + L ++V
Sbjct: 94 PIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEV 153
Query: 469 DLV 471
+++
Sbjct: 154 EVI 156
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 411 PLKFHLGG-KEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDS-KNIPPYSWLEFDV 468
P++ LG K+ + GL +G+ M GE+ + + L YG G+ S N+PP + L ++V
Sbjct: 94 PIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEV 153
Query: 469 DLV 471
+++
Sbjct: 154 EVI 156
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 373 GTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIE---GLNVGL 429
G KP+ G + V G K+ ++FD L+F +G E ++ GL +
Sbjct: 37 GYAKPN-----EGAIVEVALEGYYKD--KLFDQR----ELRFEIGEGENLDLPYGLERAI 85
Query: 430 EGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDL 470
+ GE + + PS +GS G + IPP + L++++ L
Sbjct: 86 QRXEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHL 126
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 360 LRTLPNGLVIQK-LGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGSTP-LKFHLG 417
L L NGL+ +K L G P G+ ++V L ENG + + P L F LG
Sbjct: 5 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSL-ENG----TRVQEEPELVFTLG 59
Query: 418 GKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDL 470
+VI+ L++ + M VGE + YG G S IPP++ L +V L
Sbjct: 60 DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQG-RSPYIPPHAALCLEVTL 111
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 385 GKKISVLYTGKLKENGQVFDSN--------------LGSTPLKFHLGGKEVIEGLNVGLE 430
GK + + Y G + +G++FD+ + P+ G +V+ GL+ +
Sbjct: 5 GKMVKISYDGYV--DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAIL 62
Query: 431 GMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYS 462
M VGE+R +++PP +G + P S
Sbjct: 63 EMDVGEEREVVLPPEKAFGKRDPSKIKLIPLS 94
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding
Protein 8
Length = 118
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 360 LRTLPNGLVIQK-LGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGSTP-LKFHLG 417
L L NGL+ +K L G P G+ ++V L ENG + + P L F LG
Sbjct: 7 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSL-ENG----TRVQEEPELVFTLG 61
Query: 418 GKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDL 470
+VI+ L++ + M VGE + YG G S IPP++ L +V L
Sbjct: 62 DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQG-RSPYIPPHAALCLEVTL 113
>pdb|2K8I|A Chain A, Solution Structure Of E.Coli Slyd
Length = 171
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 388 ISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIPPSLG 447
+S+ Y + E+G + D + S PL + G +I GL LEG VG+K + + +
Sbjct: 9 VSLAYQVR-TEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDA 67
Query: 448 YG 449
YG
Sbjct: 68 YG 69
>pdb|2KFW|A Chain A, Solution Structure Of Full-Length Slyd From E.Coli
Length = 196
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 388 ISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIPPSLG 447
+S+ Y + E+G + D + S PL + G +I GL LEG VG+K + + +
Sbjct: 9 VSLAYQVR-TEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDA 67
Query: 448 YG 449
YG
Sbjct: 68 YG 69
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 385 GKKISVLYTGKLKENGQVFDSN--------------LGSTPLKFHLGGKEVIEGLNVGLE 430
GK + + Y G + +G++FD+ + P+ G +V+ GL+ +
Sbjct: 5 GKMVKISYDGYV--DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAIL 62
Query: 431 GMHVGEKRRLLIPPSLGYG 449
M VGE+R +++PP +G
Sbjct: 63 EMDVGEEREVVLPPEKAFG 81
>pdb|3CGM|A Chain A, Crystal Structure Of Thermophilic Slyd
pdb|3CGN|A Chain A, Crystal Structure Of Thermophilic Slyd
pdb|3LUO|A Chain A, Crystal Structure And Functional Characterization Of The
The Prolyl Isomerase And Chaperone Slyd
Length = 158
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 386 KKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIPPS 445
K +++ YT L+ G+V D L + G + +I GL LEG GE + +P
Sbjct: 7 KVVTIRYT--LQVEGEVLDQG----ELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAE 60
Query: 446 LGYGSGGDDSKNIPPYSWLEFDVDLV 471
YG + + P S D ++V
Sbjct: 61 KAYGPHDPEGVQVVPLSAFPEDAEVV 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.130 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,010,269
Number of Sequences: 62578
Number of extensions: 517380
Number of successful extensions: 827
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 742
Number of HSP's gapped (non-prelim): 68
length of query: 475
length of database: 14,973,337
effective HSP length: 102
effective length of query: 373
effective length of database: 8,590,381
effective search space: 3204212113
effective search space used: 3204212113
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (25.0 bits)