Query 011893
Match_columns 475
No_of_seqs 393 out of 2067
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 17:28:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 6E-36 2.1E-40 278.3 21.8 179 3-191 11-190 (196)
2 2cjk_A Nuclear polyadenylated 100.0 3.3E-35 1.1E-39 266.4 15.8 167 3-185 1-167 (167)
3 4f02_A Polyadenylate-binding p 100.0 2.4E-34 8.1E-39 273.6 20.7 167 4-186 14-183 (213)
4 2qfj_A FBP-interacting repress 100.0 1.8E-34 6E-39 272.4 17.3 180 4-188 27-209 (216)
5 3md3_A Nuclear and cytoplasmic 100.0 1.8E-33 6.1E-38 253.8 21.0 163 6-183 1-166 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 3.2E-33 1.1E-37 253.3 20.0 162 4-181 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 7.1E-33 2.4E-37 250.1 21.4 161 5-181 2-167 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 4.3E-32 1.5E-36 247.1 19.3 163 4-182 2-175 (175)
9 2yh0_A Splicing factor U2AF 65 100.0 2.6E-31 8.8E-36 247.3 21.4 178 3-186 2-196 (198)
10 2g4b_A Splicing factor U2AF 65 100.0 2.8E-31 9.5E-36 241.6 19.4 158 3-182 2-172 (172)
11 1fje_B Nucleolin RBD12, protei 100.0 6E-32 2.1E-36 247.3 13.6 163 3-185 11-175 (175)
12 3smz_A Protein raver-1, ribonu 100.0 4.5E-30 1.5E-34 253.4 21.7 171 3-187 93-267 (284)
13 3pgw_A U1-A; protein-RNA compl 100.0 1.1E-29 3.7E-34 250.4 21.9 172 3-182 7-281 (282)
14 3tyt_A Heterogeneous nuclear r 100.0 5.8E-30 2E-34 242.8 19.2 171 4-181 3-204 (205)
15 2ghp_A U4/U6 snRNA-associated 100.0 5.2E-30 1.8E-34 253.9 18.9 171 4-185 116-292 (292)
16 1qm9_A Polypyrimidine tract-bi 100.0 9.2E-30 3.2E-34 237.8 15.8 172 3-184 1-197 (198)
17 2adc_A Polypyrimidine tract-bi 100.0 3.1E-29 1.1E-33 240.8 19.4 172 3-184 32-228 (229)
18 2ghp_A U4/U6 snRNA-associated 100.0 8.5E-29 2.9E-33 245.2 18.5 160 2-187 38-200 (292)
19 3smz_A Protein raver-1, ribonu 100.0 2.5E-28 8.6E-33 240.8 21.1 155 4-187 21-178 (284)
20 3sde_A Paraspeckle component 1 100.0 1.6E-28 5.4E-33 240.6 18.2 157 3-188 20-183 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 4.4E-23 1.5E-27 186.4 17.0 150 34-188 2-154 (158)
22 2i2y_A Fusion protein consists 99.9 3.2E-21 1.1E-25 173.0 13.3 136 44-185 10-149 (150)
23 4f25_A Polyadenylate-binding p 99.9 2.1E-21 7E-26 166.9 10.7 108 4-121 4-113 (115)
24 4fxv_A ELAV-like protein 1; RN 99.8 1.8E-19 6E-24 151.0 11.1 80 104-183 18-98 (99)
25 3pgw_S U1-70K; protein-RNA com 99.8 2.5E-20 8.5E-25 195.7 7.1 86 103-188 100-186 (437)
26 4fxv_A ELAV-like protein 1; RN 99.8 3.2E-19 1.1E-23 149.4 11.3 80 3-82 17-98 (99)
27 1u6f_A Tcubp1, RNA-binding pro 99.8 1.2E-18 4.3E-23 153.9 15.5 89 100-188 37-126 (139)
28 1h2v_Z 20 kDa nuclear CAP bind 99.8 6.1E-19 2.1E-23 159.2 12.9 86 103-188 37-123 (156)
29 2lxi_A RNA-binding protein 10; 99.8 1.9E-19 6.4E-24 148.4 8.4 83 105-187 1-86 (91)
30 2cqd_A RNA-binding region cont 99.8 2.6E-18 8.9E-23 147.2 14.4 88 100-187 12-99 (116)
31 2dgs_A DAZ-associated protein 99.8 1.3E-18 4.3E-23 144.8 11.9 89 101-189 6-94 (99)
32 2cpz_A CUG triplet repeat RNA- 99.8 1.8E-18 6.2E-23 148.0 12.7 88 102-189 22-110 (115)
33 3s8s_A Histone-lysine N-methyl 99.8 1.4E-18 4.6E-23 148.5 11.6 83 103-185 4-87 (110)
34 2dnz_A Probable RNA-binding pr 99.8 1.6E-18 5.5E-23 142.9 11.6 86 103-188 3-89 (95)
35 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.2E-18 4E-23 159.0 11.7 138 52-189 11-157 (165)
36 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.6E-18 5.4E-23 144.9 11.6 88 102-189 9-97 (102)
37 2cq0_A Eukaryotic translation 99.8 2.4E-18 8.2E-23 144.2 12.5 88 101-188 11-99 (103)
38 1whw_A Hypothetical protein ri 99.8 3E-18 1E-22 142.4 13.0 86 102-187 5-91 (99)
39 1x5u_A Splicing factor 3B subu 99.8 2.1E-18 7.3E-23 144.9 12.2 88 101-188 11-99 (105)
40 1x5s_A Cold-inducible RNA-bind 99.8 1.5E-18 5E-23 145.1 10.7 88 101-188 8-96 (102)
41 1x5t_A Splicing factor 3B subu 99.8 2.1E-18 7.2E-23 142.4 11.2 86 103-188 3-90 (96)
42 2dgo_A Cytotoxic granule-assoc 99.8 5.4E-18 1.9E-22 144.9 14.1 88 101-188 11-99 (115)
43 2dnm_A SRP46 splicing factor; 99.8 1.4E-18 5E-23 145.5 10.2 88 101-188 9-97 (103)
44 2lea_A Serine/arginine-rich sp 99.8 4.5E-19 1.5E-23 156.8 7.4 87 102-188 44-131 (135)
45 2cqg_A TDP-43, TAR DNA-binding 99.8 7.7E-18 2.6E-22 141.1 14.3 90 101-191 11-100 (103)
46 2dh8_A DAZ-associated protein 99.8 2.4E-18 8.1E-23 144.7 11.1 89 101-189 12-100 (105)
47 2do4_A Squamous cell carcinoma 99.8 5.7E-18 1.9E-22 141.1 12.9 86 101-187 13-99 (100)
48 3s8s_A Histone-lysine N-methyl 99.8 2.9E-18 9.9E-23 146.4 11.2 84 3-86 4-89 (110)
49 2lxi_A RNA-binding protein 10; 99.8 5.9E-19 2E-23 145.4 6.7 81 5-85 1-85 (91)
50 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.3E-18 1.1E-22 138.5 11.0 82 103-184 4-86 (87)
51 1wi8_A EIF-4B, eukaryotic tran 99.8 4.6E-18 1.6E-22 142.8 12.1 85 102-188 12-98 (104)
52 3md1_A Nuclear and cytoplasmic 99.8 4.7E-18 1.6E-22 136.4 11.6 81 105-185 1-82 (83)
53 2cph_A RNA binding motif prote 99.8 4.6E-18 1.6E-22 143.2 12.1 88 101-188 11-101 (107)
54 2dng_A Eukaryotic translation 99.8 8.1E-18 2.8E-22 141.1 13.3 86 101-188 11-97 (103)
55 2dgp_A Bruno-like 4, RNA bindi 99.8 4E-18 1.4E-22 143.5 11.4 88 101-188 9-100 (106)
56 2cpf_A RNA binding motif prote 99.8 4.3E-18 1.5E-22 141.2 11.4 86 103-188 3-92 (98)
57 1x4h_A RNA-binding protein 28; 99.8 7.3E-18 2.5E-22 142.9 12.8 89 101-189 11-106 (111)
58 3s7r_A Heterogeneous nuclear r 99.8 4.8E-18 1.6E-22 137.8 11.2 81 101-181 7-87 (87)
59 2lkz_A RNA-binding protein 5; 99.8 1.4E-18 4.9E-23 144.6 8.0 82 102-183 6-94 (95)
60 2d9p_A Polyadenylate-binding p 99.8 6.5E-18 2.2E-22 141.5 12.1 87 101-189 11-98 (103)
61 3q2s_C Cleavage and polyadenyl 99.7 9.6E-19 3.3E-23 168.4 7.6 82 104-185 67-151 (229)
62 2rs2_A Musashi-1, RNA-binding 99.7 4.6E-18 1.6E-22 144.6 10.8 87 102-188 22-108 (109)
63 2cqc_A Arginine/serine-rich sp 99.7 9.2E-18 3.2E-22 138.1 12.3 83 101-183 11-94 (95)
64 1x4b_A Heterogeneous nuclear r 99.7 4.1E-18 1.4E-22 146.0 10.4 86 103-188 25-110 (116)
65 2dgs_A DAZ-associated protein 99.7 5.7E-18 2E-22 140.8 10.9 84 3-86 8-92 (99)
66 3p5t_L Cleavage and polyadenyl 99.7 1.2E-18 4.1E-23 142.7 6.6 83 106-188 2-87 (90)
67 1oo0_B CG8781-PA, drosophila Y 99.7 5.6E-18 1.9E-22 143.6 11.0 87 101-187 22-109 (110)
68 2cqg_A TDP-43, TAR DNA-binding 99.7 8.1E-18 2.8E-22 140.9 11.8 84 3-86 13-96 (103)
69 2dgo_A Cytotoxic granule-assoc 99.7 1.2E-17 4.2E-22 142.7 13.0 85 3-87 13-99 (115)
70 1whw_A Hypothetical protein ri 99.7 7.3E-18 2.5E-22 140.1 11.2 85 2-86 5-91 (99)
71 2cq3_A RNA-binding protein 9; 99.7 1.9E-17 6.4E-22 138.7 13.7 87 101-189 11-98 (103)
72 2cpe_A RNA-binding protein EWS 99.7 8.4E-18 2.9E-22 143.2 11.7 88 101-188 11-107 (113)
73 2dhg_A TRNA selenocysteine ass 99.7 7.4E-18 2.5E-22 141.3 11.0 87 102-189 6-95 (104)
74 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.6E-17 8.9E-22 137.8 14.2 86 101-188 11-97 (103)
75 2lkz_A RNA-binding protein 5; 99.7 2.2E-18 7.7E-23 143.4 7.5 81 2-82 6-94 (95)
76 1p27_B RNA-binding protein 8A; 99.7 8E-18 2.7E-22 141.6 10.9 85 102-186 20-105 (106)
77 3s7r_A Heterogeneous nuclear r 99.7 8.5E-18 2.9E-22 136.4 10.6 79 2-80 8-87 (87)
78 2e5h_A Zinc finger CCHC-type a 99.7 1.1E-17 3.6E-22 137.6 11.2 82 101-182 12-94 (94)
79 4f25_A Polyadenylate-binding p 99.7 8.6E-18 2.9E-22 144.2 10.9 83 104-188 4-87 (115)
80 3mdf_A Peptidyl-prolyl CIS-tra 99.7 9.3E-18 3.2E-22 135.2 10.5 80 103-182 5-85 (85)
81 1x5s_A Cold-inducible RNA-bind 99.7 5.7E-18 2E-22 141.5 9.6 85 1-85 8-94 (102)
82 3bs9_A Nucleolysin TIA-1 isofo 99.7 1E-17 3.5E-22 135.6 10.8 81 3-83 4-86 (87)
83 2dnh_A Bruno-like 5, RNA bindi 99.7 1.7E-17 5.8E-22 139.3 12.5 85 103-188 13-101 (105)
84 1x4c_A Splicing factor, argini 99.7 2E-17 6.9E-22 140.2 13.0 84 102-192 12-101 (108)
85 3ucg_A Polyadenylate-binding p 99.7 3.9E-18 1.3E-22 138.7 8.2 83 1-83 2-85 (89)
86 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4.7E-18 1.6E-22 142.0 8.9 86 1-86 8-95 (102)
87 2fy1_A RNA-binding motif prote 99.7 1.6E-17 5.5E-22 142.9 12.2 86 102-188 4-90 (116)
88 2div_A TRNA selenocysteine ass 99.7 1.2E-17 4E-22 138.8 11.0 85 102-186 6-96 (99)
89 2cpz_A CUG triplet repeat RNA- 99.7 8.9E-18 3.1E-22 143.6 10.5 84 3-86 23-108 (115)
90 3ex7_B RNA-binding protein 8A; 99.7 7.1E-18 2.4E-22 146.5 9.7 88 101-188 18-106 (126)
91 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.2E-17 4.1E-22 134.6 10.3 81 1-81 3-85 (85)
92 2dnz_A Probable RNA-binding pr 99.7 1.4E-17 4.9E-22 137.1 11.0 83 3-85 3-87 (95)
93 2dh8_A DAZ-associated protein 99.7 6.7E-18 2.3E-22 142.0 8.9 85 2-86 13-98 (105)
94 1x4a_A Splicing factor, argini 99.7 2.7E-17 9.2E-22 139.3 12.7 84 101-187 18-102 (109)
95 2cqp_A RNA-binding protein 12; 99.7 1.1E-17 3.8E-22 138.7 10.1 85 101-185 11-96 (98)
96 2x1f_A MRNA 3'-END-processing 99.7 1.4E-17 4.7E-22 137.8 10.6 83 105-187 2-85 (96)
97 2do4_A Squamous cell carcinoma 99.7 1.8E-17 6.2E-22 138.0 11.2 81 3-84 15-97 (100)
98 2hvz_A Splicing factor, argini 99.7 1.6E-17 5.3E-22 138.7 10.6 99 6-115 1-101 (101)
99 3md1_A Nuclear and cytoplasmic 99.7 2.2E-17 7.7E-22 132.4 11.1 80 5-84 1-82 (83)
100 2cq0_A Eukaryotic translation 99.7 1.1E-17 3.9E-22 140.1 9.6 83 3-85 13-97 (103)
101 1wez_A HnRNP H', FTP-3, hetero 99.7 7E-18 2.4E-22 142.0 8.3 84 101-186 11-94 (102)
102 1x4h_A RNA-binding protein 28; 99.7 1.8E-17 6E-22 140.5 10.9 84 3-86 13-104 (111)
103 2kxn_B Transformer-2 protein h 99.7 1E-17 3.5E-22 147.0 9.6 86 101-186 42-128 (129)
104 2jrs_A RNA-binding protein 39; 99.7 2E-17 6.8E-22 140.5 11.1 85 101-185 22-107 (108)
105 3lqv_A PRE-mRNA branch site pr 99.7 9.8E-18 3.3E-22 143.3 9.0 102 3-131 6-109 (115)
106 4a8x_A RNA-binding protein wit 99.7 1.5E-17 5.3E-22 134.7 9.7 83 104-186 3-87 (88)
107 2cqd_A RNA-binding region cont 99.7 3.4E-17 1.2E-21 140.2 12.4 82 2-84 14-97 (116)
108 2la6_A RNA-binding protein FUS 99.7 2.3E-17 7.9E-22 137.3 11.0 83 100-182 8-99 (99)
109 2dnm_A SRP46 splicing factor; 99.7 1.2E-17 4E-22 140.0 8.9 83 3-85 11-95 (103)
110 1x5u_A Splicing factor 3B subu 99.7 1.5E-17 5.1E-22 139.7 9.6 83 3-85 13-97 (105)
111 2dgx_A KIAA0430 protein; RRM d 99.7 3.7E-17 1.3E-21 135.5 11.9 82 103-187 7-93 (96)
112 2do0_A HnRNP M, heterogeneous 99.7 1E-16 3.5E-21 136.5 14.9 85 102-187 12-97 (114)
113 1x5t_A Splicing factor 3B subu 99.7 1.3E-17 4.3E-22 137.7 8.9 83 3-85 3-88 (96)
114 2dgw_A Probable RNA-binding pr 99.7 4.5E-17 1.5E-21 133.3 12.1 82 102-186 7-89 (91)
115 2khc_A Testis-specific RNP-typ 99.7 2.4E-17 8.2E-22 141.5 10.9 82 101-182 36-118 (118)
116 1s79_A Lupus LA protein; RRM, 99.7 1E-17 3.5E-22 141.3 8.4 82 2-84 8-90 (103)
117 3ucg_A Polyadenylate-binding p 99.7 3E-17 1E-21 133.4 10.8 81 104-185 5-86 (89)
118 1wg5_A Heterogeneous nuclear r 99.7 2.4E-17 8.1E-22 138.8 10.5 86 101-187 11-97 (104)
119 2hgn_A Heterogeneous nuclear r 99.7 2.4E-18 8.1E-23 153.2 4.4 124 48-187 2-126 (139)
120 2cpy_A RNA-binding protein 12; 99.7 9.4E-18 3.2E-22 143.7 8.0 87 2-89 12-100 (114)
121 2ywk_A Putative RNA-binding pr 99.7 2.9E-17 1E-21 135.3 10.6 82 101-183 12-94 (95)
122 2cqc_A Arginine/serine-rich sp 99.7 3.5E-17 1.2E-21 134.7 11.1 80 3-82 13-94 (95)
123 2cph_A RNA binding motif prote 99.7 2.4E-17 8.2E-22 138.8 10.2 85 2-86 12-100 (107)
124 2dgv_A HnRNP M, heterogeneous 99.7 3.3E-17 1.1E-21 134.1 10.8 84 102-187 5-89 (92)
125 1p27_B RNA-binding protein 8A; 99.7 2.8E-17 9.5E-22 138.3 10.4 82 3-84 21-104 (106)
126 2cpf_A RNA binding motif prote 99.7 2E-17 7E-22 137.1 9.4 83 3-85 3-90 (98)
127 2ek1_A RNA-binding protein 12; 99.7 1.2E-17 4E-22 137.6 7.9 81 103-183 13-94 (95)
128 2rs2_A Musashi-1, RNA-binding 99.7 2.2E-17 7.7E-22 140.3 9.8 84 2-85 22-106 (109)
129 1sjq_A Polypyrimidine tract-bi 99.7 2E-17 6.9E-22 140.0 9.4 82 102-189 13-97 (105)
130 2dgp_A Bruno-like 4, RNA bindi 99.7 1.9E-17 6.6E-22 139.2 9.3 84 2-85 10-98 (106)
131 3p5t_L Cleavage and polyadenyl 99.7 7.8E-18 2.7E-22 137.9 6.6 80 6-85 2-85 (90)
132 3ns6_A Eukaryotic translation 99.7 4.9E-18 1.7E-22 142.2 5.3 83 103-185 4-94 (100)
133 2fc8_A NCL protein; structure 99.7 5.7E-17 1.9E-21 135.4 11.8 84 101-187 11-95 (102)
134 2dis_A Unnamed protein product 99.7 5.4E-17 1.8E-21 137.2 11.7 86 103-188 6-96 (109)
135 2e5h_A Zinc finger CCHC-type a 99.7 2.7E-17 9.3E-22 135.2 9.6 79 3-81 14-94 (94)
136 2dng_A Eukaryotic translation 99.7 3.8E-17 1.3E-21 136.9 10.6 82 3-85 13-95 (103)
137 2m2b_A RNA-binding protein 10; 99.7 1.3E-17 4.6E-22 146.2 8.1 86 101-187 19-111 (131)
138 2x1f_A MRNA 3'-END-processing 99.7 4.6E-17 1.6E-21 134.7 10.9 83 5-87 2-86 (96)
139 1wi8_A EIF-4B, eukaryotic tran 99.7 3.2E-17 1.1E-21 137.7 9.9 83 3-86 13-97 (104)
140 2dgu_A Heterogeneous nuclear r 99.7 1.4E-16 4.7E-21 133.6 13.8 82 102-191 8-90 (103)
141 2cpy_A RNA-binding protein 12; 99.7 2.6E-17 8.8E-22 140.9 9.4 84 102-186 12-96 (114)
142 2do0_A HnRNP M, heterogeneous 99.7 9.2E-17 3.1E-21 136.8 12.7 82 3-85 13-96 (114)
143 2dnh_A Bruno-like 5, RNA bindi 99.7 4.8E-17 1.6E-21 136.6 10.8 83 3-86 13-100 (105)
144 1p1t_A Cleavage stimulation fa 99.7 1.7E-17 5.9E-22 138.9 8.0 85 103-187 6-91 (104)
145 2d9p_A Polyadenylate-binding p 99.7 3.8E-17 1.3E-21 136.8 9.9 83 2-86 12-96 (103)
146 2cpi_A CCR4-NOT transcription 99.7 4.6E-17 1.6E-21 138.7 10.6 86 101-186 11-103 (111)
147 1wez_A HnRNP H', FTP-3, hetero 99.7 1.5E-17 5E-22 140.0 7.4 80 3-84 13-93 (102)
148 3ulh_A THO complex subunit 4; 99.7 6.5E-17 2.2E-21 136.2 11.4 81 101-182 25-106 (107)
149 2dis_A Unnamed protein product 99.7 5.7E-17 1.9E-21 137.0 11.0 85 2-86 5-95 (109)
150 2ywk_A Putative RNA-binding pr 99.7 5.4E-17 1.9E-21 133.6 10.5 79 2-81 13-93 (95)
151 2db1_A Heterogeneous nuclear r 99.7 1.9E-17 6.3E-22 142.9 8.0 85 3-88 15-103 (118)
152 3ns6_A Eukaryotic translation 99.7 1.1E-17 3.7E-22 140.0 6.4 83 3-85 4-95 (100)
153 1wg5_A Heterogeneous nuclear r 99.7 3E-17 1E-21 138.2 9.0 82 3-85 13-96 (104)
154 2jrs_A RNA-binding protein 39; 99.7 4.8E-17 1.6E-21 138.1 10.3 82 3-84 24-107 (108)
155 2cqi_A Nucleolysin TIAR; RNA r 99.7 9.1E-17 3.1E-21 134.5 11.9 82 2-85 12-95 (103)
156 2cpe_A RNA-binding protein EWS 99.7 3.5E-17 1.2E-21 139.3 9.5 84 3-86 13-106 (113)
157 1x4b_A Heterogeneous nuclear r 99.7 3.2E-17 1.1E-21 140.3 9.3 83 4-86 26-109 (116)
158 4a8x_A RNA-binding protein wit 99.7 3.9E-17 1.3E-21 132.3 9.2 82 3-84 2-86 (88)
159 3n9u_C Cleavage and polyadenyl 99.7 4.2E-17 1.4E-21 147.9 10.4 81 104-184 54-137 (156)
160 2div_A TRNA selenocysteine ass 99.7 3.6E-17 1.2E-21 135.9 9.2 81 3-83 7-94 (99)
161 1u6f_A Tcubp1, RNA-binding pro 99.7 5.2E-17 1.8E-21 143.4 10.7 84 3-86 40-125 (139)
162 2cq4_A RNA binding motif prote 99.7 1.2E-17 4.1E-22 142.6 6.3 84 3-86 23-107 (114)
163 2fy1_A RNA-binding motif prote 99.7 6.5E-17 2.2E-21 139.1 10.9 83 3-86 5-89 (116)
164 2dnn_A RNA-binding protein 12; 99.7 1.6E-17 5.3E-22 141.8 6.9 82 3-86 14-96 (109)
165 2fc9_A NCL protein; structure 99.7 1.1E-16 3.8E-21 133.5 11.9 83 101-187 11-94 (101)
166 1oo0_B CG8781-PA, drosophila Y 99.7 5.2E-17 1.8E-21 137.6 10.0 82 3-84 24-107 (110)
167 2cq1_A PTB-like protein L; RRM 99.7 1.1E-16 3.8E-21 134.6 11.9 82 102-189 12-96 (101)
168 2cq4_A RNA binding motif prote 99.7 1.9E-17 6.6E-22 141.3 7.3 83 103-186 23-106 (114)
169 2cpx_A Hypothetical protein FL 99.7 3.1E-17 1E-21 140.1 8.6 88 102-189 22-110 (115)
170 1p1t_A Cleavage stimulation fa 99.7 1.6E-17 5.5E-22 139.1 6.7 87 2-88 5-93 (104)
171 2mss_A Protein (musashi1); RNA 99.7 2E-17 6.9E-22 130.3 6.8 74 7-80 1-75 (75)
172 2dnn_A RNA-binding protein 12; 99.7 2.8E-17 9.4E-22 140.2 8.2 81 103-185 14-94 (109)
173 2kt5_A RNA and export factor-b 99.7 1.7E-16 5.7E-21 137.6 13.3 87 101-188 31-118 (124)
174 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.5E-17 5.2E-22 131.5 6.0 76 106-181 1-76 (77)
175 2cq3_A RNA-binding protein 9; 99.7 1.1E-16 3.8E-21 134.0 11.6 83 2-86 12-96 (103)
176 3n9u_C Cleavage and polyadenyl 99.7 4E-17 1.4E-21 148.0 9.5 81 4-84 54-138 (156)
177 2dhg_A TRNA selenocysteine ass 99.7 5.9E-17 2E-21 135.8 9.6 83 3-86 7-93 (104)
178 2kxn_B Transformer-2 protein h 99.7 4.4E-17 1.5E-21 142.9 9.1 82 3-84 44-127 (129)
179 2jwn_A Embryonic polyadenylate 99.7 1.1E-16 3.6E-21 138.6 11.3 82 104-186 35-117 (124)
180 2dnq_A RNA-binding protein 4B; 99.7 1.2E-16 4E-21 130.6 10.9 79 102-188 5-84 (90)
181 2dgw_A Probable RNA-binding pr 99.7 9.5E-17 3.2E-21 131.3 10.3 80 3-84 8-88 (91)
182 2ek1_A RNA-binding protein 12; 99.7 2.8E-17 9.7E-22 135.3 7.0 78 4-81 14-93 (95)
183 2cqp_A RNA-binding protein 12; 99.7 3.3E-17 1.1E-21 135.9 7.4 81 3-83 13-95 (98)
184 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.1E-16 3.8E-21 144.3 11.4 83 3-85 37-121 (156)
185 1sjq_A Polypyrimidine tract-bi 99.7 6.6E-17 2.3E-21 136.8 9.2 79 3-87 14-96 (105)
186 2mss_A Protein (musashi1); RNA 99.7 2.5E-17 8.6E-22 129.8 6.2 75 107-181 1-75 (75)
187 2db1_A Heterogeneous nuclear r 99.7 4.3E-17 1.5E-21 140.6 8.2 83 102-185 14-99 (118)
188 2khc_A Testis-specific RNP-typ 99.7 3.8E-17 1.3E-21 140.3 7.7 79 3-81 38-118 (118)
189 1s79_A Lupus LA protein; RRM, 99.7 4.3E-17 1.5E-21 137.5 7.9 80 103-183 9-88 (103)
190 1iqt_A AUF1, heterogeneous nuc 99.7 2.1E-17 7.1E-22 130.1 5.3 75 107-181 1-75 (75)
191 2la6_A RNA-binding protein FUS 99.7 1.2E-16 4.1E-21 132.9 10.2 79 3-81 11-99 (99)
192 2dgt_A RNA-binding protein 30; 99.7 3.3E-16 1.1E-20 128.4 12.6 80 101-188 6-86 (92)
193 2hgl_A HNRPF protein, heteroge 99.7 4.1E-17 1.4E-21 144.6 7.5 84 101-186 40-127 (136)
194 3ex7_B RNA-binding protein 8A; 99.7 8.1E-17 2.8E-21 139.8 9.2 84 3-86 20-105 (126)
195 2dha_A FLJ20171 protein; RRM d 99.7 2.7E-17 9.4E-22 143.3 6.2 85 3-88 21-110 (123)
196 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.7E-17 9.1E-22 137.5 5.9 83 101-185 15-99 (100)
197 2ad9_A Polypyrimidine tract-bi 99.7 1.3E-16 4.4E-21 138.1 10.3 81 103-189 29-112 (119)
198 2dgv_A HnRNP M, heterogeneous 99.7 1.3E-16 4.6E-21 130.5 9.9 81 3-85 6-88 (92)
199 3ulh_A THO complex subunit 4; 99.7 1.9E-16 6.4E-21 133.4 11.0 78 3-81 27-106 (107)
200 1fj7_A Nucleolin RBD1, protein 99.7 2.6E-17 8.9E-22 137.3 5.6 84 103-188 15-99 (101)
201 2dgx_A KIAA0430 protein; RRM d 99.7 1.7E-16 5.7E-21 131.6 10.3 79 3-84 7-91 (96)
202 2ki2_A SS-DNA binding protein 99.7 2E-17 7E-22 134.9 4.7 82 106-188 2-84 (90)
203 2hgl_A HNRPF protein, heteroge 99.7 4.8E-17 1.6E-21 144.2 7.4 83 3-86 42-128 (136)
204 1x4e_A RNA binding motif, sing 99.7 1.9E-17 6.7E-22 133.6 4.5 79 103-181 3-82 (85)
205 2jwn_A Embryonic polyadenylate 99.7 7.8E-17 2.7E-21 139.5 8.6 81 4-84 35-116 (124)
206 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.4E-17 1.2E-21 129.4 5.5 74 6-80 1-76 (77)
207 2m2b_A RNA-binding protein 10; 99.7 4.5E-17 1.5E-21 142.8 6.9 82 3-85 21-110 (131)
208 1iqt_A AUF1, heterogeneous nuc 99.7 3.1E-17 1.1E-21 129.1 5.3 74 7-80 1-75 (75)
209 1wex_A Hypothetical protein (r 99.7 2.5E-16 8.6E-21 133.1 11.2 81 102-188 12-95 (104)
210 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.3E-16 1.1E-20 137.9 12.3 81 101-181 59-140 (140)
211 1x4e_A RNA binding motif, sing 99.7 4.3E-17 1.5E-21 131.6 6.0 79 3-81 3-83 (85)
212 1x5o_A RNA binding motif, sing 99.7 2.4E-16 8.3E-21 134.4 10.9 82 102-184 22-112 (114)
213 1x4d_A Matrin 3; structural ge 99.7 1.5E-16 5.2E-21 134.1 9.4 78 103-186 13-94 (102)
214 2dnp_A RNA-binding protein 14; 99.7 3.8E-16 1.3E-20 127.6 11.4 79 102-188 6-85 (90)
215 2err_A Ataxin-2-binding protei 99.7 1.7E-16 5.8E-21 134.8 9.6 83 101-185 25-108 (109)
216 1wel_A RNA-binding protein 12; 99.7 3.3E-17 1.1E-21 142.3 5.4 83 102-185 22-105 (124)
217 2hgm_A HNRPF protein, heteroge 99.7 3E-17 1E-21 143.6 4.8 82 102-185 39-122 (126)
218 1why_A Hypothetical protein ri 99.7 3E-16 1E-20 130.0 10.6 79 102-186 14-95 (97)
219 1x4g_A Nucleolysin TIAR; struc 99.7 3.7E-16 1.3E-20 132.3 11.2 80 103-188 23-103 (109)
220 1x4a_A Splicing factor, argini 99.7 3.4E-16 1.2E-20 132.4 10.9 80 3-85 20-101 (109)
221 2jvr_A Nucleolar protein 3; RN 99.7 1.9E-16 6.5E-21 135.5 9.4 79 103-185 26-106 (111)
222 2kt5_A RNA and export factor-b 99.7 3.8E-16 1.3E-20 135.4 11.4 82 3-85 33-116 (124)
223 3r27_A HnRNP L, heterogeneous 99.7 3.4E-16 1.2E-20 131.2 10.8 78 103-186 19-99 (100)
224 2dha_A FLJ20171 protein; RRM d 99.7 5.8E-17 2E-21 141.2 6.1 83 103-186 21-107 (123)
225 1wel_A RNA-binding protein 12; 99.7 2.6E-17 8.8E-22 143.0 3.8 83 3-85 23-106 (124)
226 2cpd_A Apobec-1 stimulating pr 99.7 9.1E-16 3.1E-20 127.5 13.0 78 102-187 12-92 (99)
227 2e5g_A U6 snRNA-specific termi 99.7 4.4E-16 1.5E-20 128.4 10.7 81 103-189 6-87 (94)
228 2j76_E EIF-4B, EIF4B, eukaryot 99.7 6.5E-17 2.2E-21 135.1 5.8 81 3-84 17-99 (100)
229 2xs2_A Deleted in azoospermia- 99.7 8.4E-17 2.9E-21 134.5 6.3 82 3-85 7-88 (102)
230 2kn4_A Immunoglobulin G-bindin 99.7 2.8E-16 9.6E-21 141.6 10.2 82 4-85 69-152 (158)
231 2lea_A Serine/arginine-rich sp 99.7 9.9E-17 3.4E-21 141.7 7.1 83 3-85 45-129 (135)
232 2hgm_A HNRPF protein, heteroge 99.7 5.9E-17 2E-21 141.7 5.5 79 3-83 40-121 (126)
233 2lmi_A GRSF-1, G-rich sequence 99.7 4.1E-17 1.4E-21 138.1 4.4 84 3-87 9-96 (107)
234 3beg_B Splicing factor, argini 99.7 1.6E-16 5.3E-21 136.4 8.0 80 103-189 14-99 (115)
235 2cpj_A Non-POU domain-containi 99.7 4.1E-16 1.4E-20 129.6 10.3 80 102-187 12-92 (99)
236 2cpi_A CCR4-NOT transcription 99.7 1.7E-16 5.7E-21 135.2 8.1 82 3-84 13-102 (111)
237 2lcw_A RNA-binding protein FUS 99.5 9.6E-18 3.3E-22 143.8 0.0 85 103-187 5-98 (116)
238 2ki2_A SS-DNA binding protein 99.6 4.6E-17 1.6E-21 132.9 4.0 79 6-85 2-82 (90)
239 1x5o_A RNA binding motif, sing 99.6 4.1E-16 1.4E-20 132.9 10.1 81 2-83 22-112 (114)
240 3q2s_C Cleavage and polyadenyl 99.6 1.6E-16 5.3E-21 152.9 8.3 79 4-82 67-149 (229)
241 1x4c_A Splicing factor, argini 99.6 7.4E-16 2.5E-20 130.5 11.4 77 3-86 13-96 (108)
242 2hvz_A Splicing factor, argini 99.6 3.5E-16 1.2E-20 130.5 9.2 77 106-187 1-78 (101)
243 2xs2_A Deleted in azoospermia- 99.6 1.6E-16 5.3E-21 132.8 7.1 83 103-187 7-89 (102)
244 1fjc_A Nucleolin RBD2, protein 99.6 5.1E-16 1.7E-20 128.1 10.1 81 102-187 13-94 (96)
245 2e5j_A Methenyltetrahydrofolat 99.6 4.2E-16 1.4E-20 129.2 9.6 80 102-186 16-96 (97)
246 1wf1_A RNA-binding protein RAL 99.6 7.7E-16 2.6E-20 130.6 11.4 76 103-186 25-102 (110)
247 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.3E-16 1.5E-20 137.1 9.9 78 3-80 61-140 (140)
248 2cq1_A PTB-like protein L; RRM 99.6 6E-16 2.1E-20 130.1 10.0 78 3-86 13-94 (101)
249 2lmi_A GRSF-1, G-rich sequence 99.6 6.9E-17 2.4E-21 136.7 4.2 83 102-185 8-93 (107)
250 2nlw_A Eukaryotic translation 99.6 5E-16 1.7E-20 130.9 9.3 81 103-185 13-101 (105)
251 2cqh_A IGF-II mRNA-binding pro 99.6 6.1E-16 2.1E-20 127.0 9.7 80 102-188 5-87 (93)
252 2ytc_A PRE-mRNA-splicing facto 99.6 1E-15 3.4E-20 123.3 10.5 76 101-182 8-85 (85)
253 2ad9_A Polypyrimidine tract-bi 99.6 6.3E-16 2.1E-20 133.8 9.8 79 3-87 29-111 (119)
254 2wbr_A GW182, gawky, LD47780P; 99.6 4.7E-16 1.6E-20 126.8 8.4 72 105-182 7-79 (89)
255 2err_A Ataxin-2-binding protei 99.6 4.8E-16 1.7E-20 132.0 8.6 80 2-83 26-107 (109)
256 2e44_A Insulin-like growth fac 99.6 8.1E-16 2.8E-20 126.9 9.7 82 101-186 11-94 (96)
257 1rk8_A CG8781-PA, CG8781-PA pr 99.6 8.5E-16 2.9E-20 140.0 10.8 84 3-86 70-155 (165)
258 2jvo_A Nucleolar protein 3; nu 99.6 6.9E-16 2.4E-20 131.0 9.4 79 101-187 27-106 (108)
259 2dnq_A RNA-binding protein 4B; 99.6 1.2E-15 4.2E-20 124.5 10.5 76 3-86 6-83 (90)
260 2fc8_A NCL protein; structure 99.6 6.3E-16 2.1E-20 129.0 8.8 81 3-86 13-95 (102)
261 2hgn_A Heterogeneous nuclear r 99.6 8.1E-17 2.8E-21 143.3 3.5 81 3-85 44-125 (139)
262 1fj7_A Nucleolin RBD1, protein 99.6 7.7E-17 2.6E-21 134.5 3.1 81 4-85 16-97 (101)
263 2fc9_A NCL protein; structure 99.6 6.6E-16 2.3E-20 128.7 8.8 80 2-85 12-93 (101)
264 1wex_A Hypothetical protein (r 99.6 1.1E-15 3.9E-20 129.1 10.3 77 4-86 14-94 (104)
265 2dnl_A Cytoplasmic polyadenyla 99.6 8.4E-16 2.9E-20 131.5 9.4 82 3-85 6-90 (114)
266 2la4_A Nuclear and cytoplasmic 99.6 5.7E-16 1.9E-20 129.2 8.1 76 103-184 25-101 (101)
267 2dgu_A Heterogeneous nuclear r 99.6 2E-15 6.8E-20 126.5 11.4 77 3-87 9-87 (103)
268 2a3j_A U1 small nuclear ribonu 99.6 1.1E-15 3.6E-20 134.0 10.0 81 103-186 27-112 (127)
269 1x4d_A Matrin 3; structural ge 99.6 5.8E-16 2E-20 130.5 8.0 76 3-84 13-93 (102)
270 1l3k_A Heterogeneous nuclear r 99.6 1.6E-15 5.5E-20 140.1 11.6 87 101-187 9-95 (196)
271 3d2w_A TAR DNA-binding protein 99.6 6.9E-16 2.3E-20 126.4 8.1 80 102-187 8-87 (89)
272 1x5p_A Negative elongation fac 99.6 4.3E-15 1.5E-19 123.0 13.0 79 102-188 12-91 (97)
273 2wbr_A GW182, gawky, LD47780P; 99.6 1.2E-15 4.1E-20 124.3 9.2 71 5-81 7-79 (89)
274 4f02_A Polyadenylate-binding p 99.6 1.6E-15 5.4E-20 143.5 11.5 83 103-185 13-96 (213)
275 3r27_A HnRNP L, heterogeneous 99.6 2E-15 6.7E-20 126.6 10.7 75 4-84 20-98 (100)
276 1x4g_A Nucleolysin TIAR; struc 99.6 1.8E-15 6.3E-20 128.0 10.7 77 3-85 23-101 (109)
277 3d2w_A TAR DNA-binding protein 99.6 9.9E-16 3.4E-20 125.5 8.6 78 3-85 9-86 (89)
278 1wf0_A TDP-43, TAR DNA-binding 99.6 5.1E-16 1.7E-20 126.3 6.8 80 103-188 3-82 (88)
279 1x4f_A Matrin 3; structural ge 99.6 9.6E-16 3.3E-20 131.2 8.3 80 102-187 22-105 (112)
280 2kvi_A Nuclear polyadenylated 99.6 6.9E-16 2.4E-20 127.7 7.3 78 102-187 7-86 (96)
281 1why_A Hypothetical protein ri 99.6 1.6E-15 5.3E-20 125.6 9.4 76 3-84 15-94 (97)
282 1nu4_A U1A RNA binding domain; 99.6 1E-15 3.6E-20 126.4 8.1 82 102-186 5-91 (97)
283 2nlw_A Eukaryotic translation 99.6 1.1E-15 3.8E-20 128.8 8.4 78 4-83 14-100 (105)
284 2dnl_A Cytoplasmic polyadenyla 99.6 1.1E-15 3.6E-20 130.8 8.4 81 103-185 6-89 (114)
285 2xnq_A Nuclear polyadenylated 99.6 3E-15 1E-19 124.5 10.8 77 101-185 18-96 (97)
286 2lcw_A RNA-binding protein FUS 99.4 5.1E-17 1.7E-21 139.2 0.0 85 2-86 4-98 (116)
287 2dgt_A RNA-binding protein 30; 99.6 3.1E-15 1E-19 122.6 10.3 76 2-85 7-84 (92)
288 2krb_A Eukaryotic translation 99.6 8.4E-16 2.9E-20 123.1 6.8 71 5-77 1-80 (81)
289 2la4_A Nuclear and cytoplasmic 99.6 1.6E-15 5.5E-20 126.4 8.6 74 4-83 26-101 (101)
290 2jvr_A Nucleolar protein 3; RN 99.6 1.4E-15 4.7E-20 130.1 8.3 76 4-83 27-105 (111)
291 1wf0_A TDP-43, TAR DNA-binding 99.6 6.8E-16 2.3E-20 125.5 6.1 78 3-85 3-80 (88)
292 2e5g_A U6 snRNA-specific termi 99.6 2.6E-15 8.9E-20 123.7 9.7 78 3-85 6-84 (94)
293 2f3j_A RNA and export factor b 99.6 2.6E-15 9E-20 138.7 10.7 85 101-186 84-169 (177)
294 2cpx_A Hypothetical protein FL 99.6 3.7E-16 1.3E-20 133.3 4.3 83 4-86 24-108 (115)
295 2krb_A Eukaryotic translation 99.6 7.9E-16 2.7E-20 123.3 5.7 71 106-178 2-80 (81)
296 2cpj_A Non-POU domain-containi 99.6 1.9E-15 6.6E-20 125.6 8.1 77 3-85 13-91 (99)
297 2e5j_A Methenyltetrahydrofolat 99.6 2.5E-15 8.7E-20 124.5 8.6 76 4-84 18-95 (97)
298 1fxl_A Paraneoplastic encephal 99.6 5.6E-15 1.9E-19 132.4 11.5 82 105-186 2-84 (167)
299 1b7f_A Protein (SXL-lethal pro 99.6 4.7E-15 1.6E-19 133.4 11.0 84 104-187 2-86 (168)
300 3lqv_A PRE-mRNA branch site pr 99.6 2.2E-15 7.6E-20 128.5 8.3 81 103-186 6-87 (115)
301 2dnp_A RNA-binding protein 14; 99.6 4.3E-15 1.5E-19 121.3 9.5 74 3-84 7-82 (90)
302 2ytc_A PRE-mRNA-splicing facto 99.6 3.6E-15 1.2E-19 120.0 8.9 74 2-81 9-85 (85)
303 1nu4_A U1A RNA binding domain; 99.6 2.1E-15 7.2E-20 124.5 7.3 81 3-86 6-92 (97)
304 2jvo_A Nucleolar protein 3; nu 99.6 4.8E-15 1.6E-19 125.8 9.7 76 2-85 28-105 (108)
305 2f3j_A RNA and export factor b 99.6 3.2E-15 1.1E-19 138.2 9.2 81 4-85 87-169 (177)
306 2a3j_A U1 small nuclear ribonu 99.6 4E-15 1.4E-19 130.3 9.3 82 4-88 28-115 (127)
307 1sjr_A Polypyrimidine tract-bi 99.6 8.2E-15 2.8E-19 133.4 11.6 81 102-186 43-126 (164)
308 1wg1_A KIAA1579 protein, homol 99.6 4.2E-15 1.4E-19 121.0 8.6 75 104-185 4-79 (88)
309 2cqh_A IGF-II mRNA-binding pro 99.6 2.7E-15 9.2E-20 123.1 7.4 76 3-85 6-85 (93)
310 1fjc_A Nucleolin RBD2, protein 99.6 2E-15 6.8E-20 124.5 6.6 78 2-84 13-92 (96)
311 2e44_A Insulin-like growth fac 99.6 3.3E-15 1.1E-19 123.2 7.8 77 4-84 14-93 (96)
312 2cpd_A Apobec-1 stimulating pr 99.6 1.3E-14 4.4E-19 120.6 11.4 75 3-85 13-91 (99)
313 1x4f_A Matrin 3; structural ge 99.6 2.6E-15 9E-20 128.5 7.3 77 3-85 23-104 (112)
314 1whx_A Hypothetical protein ri 99.6 4.2E-15 1.4E-19 126.7 8.4 77 104-186 9-86 (111)
315 2voo_A Lupus LA protein; RNA-b 99.6 3.8E-15 1.3E-19 139.5 8.9 80 104-184 108-187 (193)
316 1whx_A Hypothetical protein ri 99.6 4E-15 1.4E-19 126.8 8.1 76 2-83 7-84 (111)
317 3egn_A RNA-binding protein 40; 99.6 1.9E-15 6.5E-20 134.2 6.2 87 102-188 42-134 (143)
318 1wg1_A KIAA1579 protein, homol 99.6 5.2E-15 1.8E-19 120.5 8.1 74 3-83 3-78 (88)
319 2cjk_A Nuclear polyadenylated 99.6 4E-15 1.4E-19 133.9 7.4 79 5-83 87-166 (167)
320 1wf1_A RNA-binding protein RAL 99.6 7.9E-15 2.7E-19 124.3 8.7 72 5-84 27-101 (110)
321 2xnq_A Nuclear polyadenylated 99.6 2E-14 6.7E-19 119.5 10.8 73 3-83 20-95 (97)
322 2qfj_A FBP-interacting repress 99.6 1.5E-14 5E-19 135.7 11.3 82 4-85 124-207 (216)
323 3md3_A Nuclear and cytoplasmic 99.6 1.7E-14 5.8E-19 129.1 11.2 79 3-81 85-165 (166)
324 2cq2_A Hypothetical protein LO 99.5 1.1E-14 3.6E-19 125.0 9.2 79 103-187 23-109 (114)
325 3beg_B Splicing factor, argini 99.5 5E-15 1.7E-19 127.0 7.1 74 3-83 14-94 (115)
326 2kvi_A Nuclear polyadenylated 99.5 7.6E-15 2.6E-19 121.4 8.0 75 3-85 8-85 (96)
327 2i2y_A Fusion protein consists 99.5 9.5E-15 3.3E-19 130.7 9.0 76 3-83 71-148 (150)
328 2hzc_A Splicing factor U2AF 65 99.5 1.3E-14 4.5E-19 117.2 8.7 72 2-79 3-86 (87)
329 2bz2_A Negative elongation fac 99.5 1.1E-14 3.6E-19 126.4 8.7 78 102-187 36-114 (121)
330 3zzy_A Polypyrimidine tract-bi 99.5 3.3E-14 1.1E-18 124.7 11.4 80 102-186 25-108 (130)
331 2j8a_A Histone-lysine N-methyl 99.5 1.2E-14 4.1E-19 126.4 8.4 78 106-183 3-95 (136)
332 2j8a_A Histone-lysine N-methyl 99.5 1.5E-14 5E-19 125.8 8.1 77 6-82 3-95 (136)
333 2hzc_A Splicing factor U2AF 65 99.5 2.2E-14 7.5E-19 115.8 8.7 71 103-180 4-86 (87)
334 1x5p_A Negative elongation fac 99.5 4.9E-14 1.7E-18 116.6 11.0 75 3-85 13-89 (97)
335 2e5i_A Heterogeneous nuclear r 99.5 4.8E-14 1.6E-18 122.8 11.5 79 102-186 22-104 (124)
336 2yh0_A Splicing factor U2AF 65 99.5 2.8E-14 9.4E-19 132.0 10.4 82 3-84 112-195 (198)
337 1sjr_A Polypyrimidine tract-bi 99.5 4.4E-14 1.5E-18 128.5 10.9 77 5-85 46-126 (164)
338 3pgw_S U1-70K; protein-RNA com 99.5 2.7E-14 9.2E-19 149.8 10.9 82 4-85 101-184 (437)
339 3egn_A RNA-binding protein 40; 99.5 4.8E-15 1.6E-19 131.6 4.4 84 3-86 43-133 (143)
340 2g4b_A Splicing factor U2AF 65 99.5 2.8E-14 9.4E-19 129.0 9.5 76 5-80 94-171 (172)
341 2voo_A Lupus LA protein; RNA-b 99.5 3.3E-14 1.1E-18 133.1 8.9 79 4-83 108-187 (193)
342 3nmr_A Cugbp ELAV-like family 99.5 4.8E-14 1.6E-18 127.4 9.5 84 104-187 2-91 (175)
343 2pe8_A Splicing factor 45; RRM 99.5 8.5E-14 2.9E-18 117.7 10.3 81 103-183 6-93 (105)
344 3zzy_A Polypyrimidine tract-bi 99.5 1.4E-13 4.7E-18 120.7 11.1 75 6-85 29-108 (130)
345 2diu_A KIAA0430 protein; struc 99.5 6.6E-14 2.2E-18 115.3 7.8 74 104-187 7-87 (96)
346 3tyt_A Heterogeneous nuclear r 99.5 9.7E-14 3.3E-18 131.1 10.2 78 104-186 3-82 (205)
347 2cq2_A Hypothetical protein LO 99.5 5.6E-14 1.9E-18 120.5 7.7 77 3-85 23-108 (114)
348 2dit_A HIV TAT specific factor 99.5 4.7E-13 1.6E-17 114.0 12.4 83 101-187 11-105 (112)
349 2e5i_A Heterogeneous nuclear r 99.5 3.1E-13 1.1E-17 117.7 11.3 74 6-85 26-104 (124)
350 3pgw_A U1-A; protein-RNA compl 99.4 2.6E-13 8.8E-18 133.1 11.3 83 101-186 5-92 (282)
351 2pe8_A Splicing factor 45; RRM 99.4 3.2E-13 1.1E-17 114.2 10.1 82 2-83 5-94 (105)
352 1fje_B Nucleolin RBD12, protei 99.4 7.8E-14 2.7E-18 126.7 6.1 86 101-187 9-94 (175)
353 2bz2_A Negative elongation fac 99.4 2.7E-13 9.2E-18 117.4 8.7 75 3-85 37-113 (121)
354 2adc_A Polypyrimidine tract-bi 99.4 3.6E-13 1.2E-17 128.7 9.3 80 102-186 31-112 (229)
355 2diu_A KIAA0430 protein; struc 99.4 6.2E-13 2.1E-17 109.5 9.2 72 5-86 8-87 (96)
356 3u1l_A PRE-mRNA-splicing facto 99.4 3.5E-13 1.2E-17 130.1 8.6 79 2-86 131-232 (240)
357 3u1l_A PRE-mRNA-splicing facto 99.4 3.4E-13 1.2E-17 130.2 7.3 79 102-186 131-231 (240)
358 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.2E-12 7.6E-17 108.1 11.1 68 115-188 27-94 (100)
359 3v4m_A Splicing factor U2AF 65 99.4 9.8E-13 3.4E-17 111.1 7.6 81 103-183 3-96 (105)
360 1qm9_A Polypyrimidine tract-bi 99.4 6.3E-13 2.1E-17 123.4 6.9 77 105-186 3-81 (198)
361 2dit_A HIV TAT specific factor 99.3 3.9E-12 1.3E-16 108.2 9.6 79 3-85 13-104 (112)
362 2d9o_A DNAJ (HSP40) homolog, s 99.3 7.3E-12 2.5E-16 104.9 11.0 76 4-84 9-91 (100)
363 3sde_A Paraspeckle component 1 99.3 5.5E-12 1.9E-16 122.8 10.7 76 102-183 19-95 (261)
364 3ue2_A Poly(U)-binding-splicin 99.3 5.1E-12 1.8E-16 109.0 8.8 80 104-183 19-108 (118)
365 1jmt_A Splicing factor U2AF 35 99.3 1.4E-12 4.6E-17 110.0 4.9 71 110-181 20-103 (104)
366 3v4m_A Splicing factor U2AF 65 99.3 6.5E-12 2.2E-16 106.0 7.3 80 4-83 4-97 (105)
367 1jmt_A Splicing factor U2AF 35 99.3 2.8E-12 9.6E-17 108.1 4.5 70 10-80 20-103 (104)
368 3ue2_A Poly(U)-binding-splicin 99.2 2.5E-11 8.5E-16 104.7 9.0 79 4-82 19-108 (118)
369 3s6e_A RNA-binding protein 39; 99.1 8.2E-11 2.8E-15 100.8 8.5 77 103-183 5-92 (114)
370 3tht_A Alkylated DNA repair pr 99.1 1.2E-10 4E-15 118.1 8.9 75 102-182 15-97 (345)
371 3tht_A Alkylated DNA repair pr 99.1 2.1E-10 7.1E-15 116.3 10.5 109 2-129 15-132 (345)
372 1owx_A Lupus LA protein, SS-B, 99.0 1E-09 3.5E-14 94.7 9.0 79 98-182 11-94 (121)
373 3s6e_A RNA-binding protein 39; 99.0 1.8E-09 6.1E-14 92.5 8.8 77 4-84 6-94 (114)
374 2dnr_A Synaptojanin-1; RRM dom 98.9 2.7E-09 9.4E-14 87.0 8.0 72 104-184 6-86 (91)
375 1owx_A Lupus LA protein, SS-B, 98.8 2.9E-09 1E-13 91.9 6.0 72 4-81 17-94 (121)
376 1ufw_A Synaptojanin 2; RNP dom 98.7 1.8E-08 6.3E-13 82.5 6.8 72 103-183 13-94 (95)
377 2dnr_A Synaptojanin-1; RRM dom 98.7 4.8E-08 1.7E-12 79.6 7.5 70 5-82 7-85 (91)
378 3dxb_A Thioredoxin N-terminall 98.6 6.7E-08 2.3E-12 91.4 7.1 68 116-183 140-212 (222)
379 2dhx_A Poly (ADP-ribose) polym 98.5 7E-07 2.4E-11 74.1 9.9 87 4-118 7-99 (104)
380 3dxb_A Thioredoxin N-terminall 98.5 2.7E-07 9.4E-12 87.2 7.9 66 17-82 141-212 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.4 1.9E-07 6.4E-12 76.5 5.1 69 5-81 15-93 (95)
382 2l9w_A U4/U6 snRNA-associated- 98.3 2.8E-06 9.5E-11 71.1 9.4 71 104-180 20-96 (117)
383 2l9w_A U4/U6 snRNA-associated- 98.2 6.7E-06 2.3E-10 68.8 8.8 72 3-80 19-97 (117)
384 2dhx_A Poly (ADP-ribose) polym 98.1 1.3E-05 4.5E-10 66.4 10.1 77 103-187 6-87 (104)
385 1wey_A Calcipressin 1; structu 97.4 0.00031 1.1E-08 58.4 7.1 75 105-185 5-85 (104)
386 1whv_A Poly(A)-specific ribonu 97.3 0.00052 1.8E-08 56.2 7.2 58 101-167 12-69 (100)
387 1whv_A Poly(A)-specific ribonu 97.0 0.0011 3.8E-08 54.3 6.1 51 5-64 16-66 (100)
388 1wey_A Calcipressin 1; structu 97.0 0.0029 9.8E-08 52.6 8.3 72 5-82 5-83 (104)
389 1uw4_A UPF3X; nonsense mediate 96.9 0.0023 8E-08 52.0 7.4 67 106-172 2-71 (91)
390 1uw4_A UPF3X; nonsense mediate 96.9 0.0032 1.1E-07 51.2 7.9 65 6-70 2-70 (91)
391 1wwh_A Nucleoporin 35, nucleop 96.8 0.0039 1.3E-07 53.1 8.2 73 103-182 22-95 (119)
392 1wwh_A Nucleoporin 35, nucleop 96.7 0.0066 2.2E-07 51.7 8.6 72 4-82 23-96 (119)
393 3ctr_A Poly(A)-specific ribonu 96.7 0.0016 5.5E-08 53.5 4.4 54 105-167 6-59 (101)
394 3ctr_A Poly(A)-specific ribonu 96.6 0.0017 5.7E-08 53.4 4.5 50 6-64 7-56 (101)
395 2l08_A Regulator of nonsense t 96.1 0.0064 2.2E-07 49.9 5.1 78 104-181 8-93 (97)
396 3p3d_A Nucleoporin 53; structu 95.9 0.0073 2.5E-07 52.2 4.5 81 1-82 3-98 (132)
397 3pq1_A Poly(A) RNA polymerase; 95.7 0.0027 9.4E-08 66.3 1.5 56 3-64 51-106 (464)
398 2l08_A Regulator of nonsense t 95.3 0.0099 3.4E-07 48.8 3.2 61 4-64 8-70 (97)
399 3pq1_A Poly(A) RNA polymerase; 95.0 0.011 3.7E-07 61.9 3.1 58 104-167 52-109 (464)
400 3p3d_A Nucleoporin 53; structu 94.4 0.05 1.7E-06 46.9 5.4 78 105-183 7-98 (132)
401 3d45_A Poly(A)-specific ribonu 88.8 0.92 3.1E-05 47.9 8.2 57 103-168 438-494 (507)
402 3d45_A Poly(A)-specific ribonu 85.1 1.4 4.8E-05 46.5 7.0 51 5-64 440-490 (507)
403 4eyt_A Telomerase associated p 72.8 25 0.00086 28.0 8.9 66 4-77 11-76 (129)
404 2cu1_A Mitogen-activated prote 70.1 16 0.00054 29.7 7.3 65 112-184 23-88 (103)
405 2ew9_A Copper-transporting ATP 68.2 48 0.0017 27.2 10.8 134 1-168 1-142 (149)
406 4eyt_A Telomerase associated p 65.2 48 0.0016 26.4 9.0 72 104-183 11-90 (129)
407 3j21_T 50S ribosomal protein L 52.5 23 0.00077 28.0 5.2 50 12-64 29-80 (86)
408 2hiy_A Hypothetical protein; C 48.7 71 0.0024 28.6 8.7 126 6-155 7-144 (183)
409 2npt_B Mitogen-activated prote 47.4 33 0.0011 27.6 5.3 50 112-169 35-85 (100)
410 3fry_A Probable copper-exporti 45.6 74 0.0025 22.8 7.1 57 105-168 6-62 (73)
411 2jrh_A Mitogen-activated prote 43.9 35 0.0012 27.1 4.9 62 112-181 19-81 (94)
412 2c60_A Human mitogen-activated 42.9 30 0.001 28.2 4.5 59 112-178 46-105 (111)
413 2g0c_A ATP-dependent RNA helic 42.1 38 0.0013 25.3 5.0 58 116-182 12-75 (76)
414 3ezj_A General secretion pathw 39.0 56 0.0019 30.2 6.7 114 13-129 9-133 (241)
415 4a17_R RPL23A, 60S ribosomal p 36.9 33 0.0011 30.0 4.2 53 6-63 89-143 (150)
416 3lpe_A Putative transcription 35.5 1.6E+02 0.0054 23.0 9.0 42 18-64 21-67 (92)
417 2lfv_A Protein DAMX; cell divi 41.7 7.9 0.00027 31.9 0.0 55 116-172 33-89 (106)
418 4e8u_A Putative uncharacterize 35.4 62 0.0021 28.9 5.8 47 117-166 33-82 (172)
419 3u5e_X 60S ribosomal protein L 34.9 33 0.0011 29.7 3.8 49 12-63 85-135 (142)
420 2g0c_A ATP-dependent RNA helic 33.6 71 0.0024 23.7 5.3 66 7-81 2-75 (76)
421 4e8u_A Putative uncharacterize 32.3 61 0.0021 28.9 5.3 55 7-64 14-80 (172)
422 3iz5_X 60S ribosomal protein L 32.1 34 0.0012 29.9 3.5 49 13-64 96-146 (152)
423 3j21_T 50S ribosomal protein L 30.1 96 0.0033 24.4 5.5 54 111-167 28-83 (86)
424 3lfj_A Manxb, phosphotransfera 29.1 54 0.0019 29.6 4.5 30 48-79 98-127 (187)
425 1vq8_S 50S ribosomal protein L 28.3 75 0.0026 24.9 4.6 52 9-63 25-78 (85)
426 4hhu_A OR280; engineered prote 28.2 88 0.003 26.1 5.2 71 106-181 43-129 (170)
427 3lpe_A Putative transcription 27.5 1.1E+02 0.0037 24.0 5.6 32 132-168 40-71 (92)
428 3dxs_X Copper-transporting ATP 27.1 1.6E+02 0.0054 20.7 6.2 58 106-169 4-65 (74)
429 3fut_A Dimethyladenosine trans 27.1 52 0.0018 31.3 4.2 42 6-64 111-152 (271)
430 3bb5_A Stress responsive alpha 26.3 2.5E+02 0.0087 22.9 8.0 57 8-64 24-91 (121)
431 3zzp_A TS9, ribosomal protein 25.7 1.2E+02 0.0041 23.1 5.3 61 49-131 7-70 (77)
432 3uzu_A Ribosomal RNA small sub 25.6 33 0.0011 32.8 2.6 43 6-64 115-157 (279)
433 1vd2_A Protein kinase C, IOTA 25.0 2.3E+02 0.008 22.2 7.0 56 108-168 17-75 (89)
434 3fry_A Probable copper-exporti 24.3 1.3E+02 0.0043 21.5 5.2 54 4-64 5-58 (73)
435 3mfb_A Uncharacterized protein 23.7 1E+02 0.0034 27.1 5.0 37 117-153 3-42 (157)
436 4bby_A Alkyldihydroxyacetoneph 21.7 72 0.0025 34.4 4.5 56 111-167 349-408 (658)
437 1i4w_A Mitochondrial replicati 21.4 68 0.0023 31.9 3.9 22 7-28 144-165 (353)
438 1x8d_A Hypothetical protein YI 20.9 1.4E+02 0.005 24.0 5.2 44 117-164 24-67 (104)
439 2qyc_A Ferredoxin-like protein 20.9 3E+02 0.01 21.4 7.4 56 7-64 8-73 (103)
440 2qyc_A Ferredoxin-like protein 20.8 1.8E+02 0.0063 22.7 5.9 55 108-163 8-72 (103)
441 1fme_A FSD-EY peptide; beta-BE 20.7 51 0.0017 19.6 1.7 12 18-29 14-25 (28)
442 2xzm_P RPS24E; ribosome, trans 20.6 1E+02 0.0035 26.8 4.3 47 115-162 31-82 (149)
443 3ts2_A Protein LIN-28 homolog 20.5 16 0.00054 31.8 -0.9 29 119-155 1-29 (148)
444 2exu_A Transcription initiatio 20.2 4.2E+02 0.014 24.0 8.7 27 146-172 148-174 (200)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=6e-36 Score=278.25 Aligned_cols=179 Identities=37% Similarity=0.745 Sum_probs=152.4
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecC
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~ 81 (475)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| .+.+.+.++.|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeeccc
Confidence 46789999999999999999999999999999999999989999999999999999999999 77889999999999987
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHH
Q 011893 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~ 161 (475)
++...... ......++|||+|||+++|+++|+++|++||.|+.|.|+.++.+++++|||||+|+++++|+
T Consensus 91 ~~~~~~~~----------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 160 (196)
T 1l3k_A 91 SREDSQRP----------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160 (196)
T ss_dssp C---------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred Cccccccc----------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHH
Confidence 65433211 12245689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCceeCCeEEEEEEccCCCCCCCCC
Q 011893 162 KVLLKTFHELNGKMVEVKRAVPKELSPGPS 191 (475)
Q Consensus 162 ~Al~~~~~~l~Gr~i~V~~a~~k~~~~~~~ 191 (475)
+||+++.+.|+|++|+|+++.+++......
T Consensus 161 ~A~~~~~~~~~G~~i~v~~a~~k~~~~~~~ 190 (196)
T 1l3k_A 161 KIVIQKYHTVNGHNCEVRKALSKQEMASAS 190 (196)
T ss_dssp HHHHCSCCEETTEECEEEECC---------
T ss_pred HHHHhCCcEECCEEEEEEecCChhHhcccc
Confidence 999986699999999999999988765443
No 2
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=3.3e-35 Score=266.38 Aligned_cols=167 Identities=47% Similarity=0.936 Sum_probs=154.3
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHcCcccCCeEEEEeecCC
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al~~~~~i~gr~v~V~~a~~ 82 (475)
++.++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||.+.+.+.++.|.|.++.+
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIP 80 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccc
Confidence 46899999999999999999999999999999999999989999999999999999999999878899999999998876
Q ss_pred CcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHH
Q 011893 83 RDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162 (475)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~ 162 (475)
+... ...++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|+++++|++
T Consensus 81 ~~~~----------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 144 (167)
T 2cjk_A 81 RDEQ----------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDR 144 (167)
T ss_dssp HHHH----------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHH
T ss_pred hhhc----------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 5432 234689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCceeCCeEEEEEEccCCC
Q 011893 163 VLLKTFHELNGKMVEVKRAVPKE 185 (475)
Q Consensus 163 Al~~~~~~l~Gr~i~V~~a~~k~ 185 (475)
|+++..+.|+|++|+|++|.||+
T Consensus 145 A~~~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 145 VCQNKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp HHHCSEECSSSSCEEEEECCCCC
T ss_pred HHhCCCEEeCCeEEEEeecCCCC
Confidence 99843389999999999998874
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.4e-34 Score=273.59 Aligned_cols=167 Identities=25% Similarity=0.451 Sum_probs=152.1
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
..++|||+|||+++||++|+++|++||+|++|+|++|+.+++++|||||+|.++++|++|| ++...+.++.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 4689999999999999999999999999999999999999999999999999999999999 78899999999999887
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHH
Q 011893 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~ 161 (475)
....... ...++|||+|||+++|+++|+++|++||.|++|+|++|+ ..+||||||+|+++++|+
T Consensus 94 ~~~~~~~--------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~ 157 (213)
T 4f02_A 94 RDPSLRK--------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAE 157 (213)
T ss_dssp CCTHHHH--------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHH
T ss_pred ccccccc--------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHH
Confidence 6544332 234689999999999999999999999999999999986 457999999999999999
Q ss_pred HHHHhcC-ceeCCeEEEEEEccCCCC
Q 011893 162 KVLLKTF-HELNGKMVEVKRAVPKEL 186 (475)
Q Consensus 162 ~Al~~~~-~~l~Gr~i~V~~a~~k~~ 186 (475)
+||+.++ ++|+|++|+|++|+++..
T Consensus 158 ~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 158 RAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp HHHHHHTTCEETTEECEEEECCCHHH
T ss_pred HHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 9999888 899999999999988654
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.8e-34 Score=272.38 Aligned_cols=180 Identities=22% Similarity=0.462 Sum_probs=156.1
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++...|.+++|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4689999999999999999999999999999999999889999999999999999999999 78999999999999887
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHH
Q 011893 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~ 161 (475)
............ .......++|||+|||.++|++||+++|++||.|++|+|++++.++++++||||+|+++++|+
T Consensus 107 ~~~~~~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 107 NIGQAQPIIDQL-----AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp CCGGGHHHHHHH-----HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred Cccccchhhhhh-----hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 654332211000 001234589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC-ceeCCeEEEEEEccCCCCCC
Q 011893 162 KVLLKTF-HELNGKMVEVKRAVPKELSP 188 (475)
Q Consensus 162 ~Al~~~~-~~l~Gr~i~V~~a~~k~~~~ 188 (475)
+|++.++ +.|+|++|+|.+++++....
T Consensus 182 ~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 182 DAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 9999888 89999999999998876544
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=253.79 Aligned_cols=163 Identities=23% Similarity=0.452 Sum_probs=150.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCCC
Q 011893 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPR 83 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~~ 83 (475)
|+|||+|||+++|+++|+++|++||+|++|.|++++ ++++++||||+|.++++|++|+ ++...+.++.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999997 5789999999999999999999 8999999999999998654
Q ss_pred cchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHH
Q 011893 84 DDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~A 163 (475)
... .....++|||+|||.++|+++|+++|++||.|+++.|+.++.+++++|+|||+|+++++|++|
T Consensus 80 ~~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A 145 (166)
T 3md3_A 80 QQS--------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNA 145 (166)
T ss_dssp CCC--------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH
T ss_pred CCC--------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 321 234568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC-ceeCCeEEEEEEccC
Q 011893 164 LLKTF-HELNGKMVEVKRAVP 183 (475)
Q Consensus 164 l~~~~-~~l~Gr~i~V~~a~~ 183 (475)
++.++ ..|+|++|+|++|++
T Consensus 146 ~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 146 MDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHTTCEETTEECEEEESCC
T ss_pred HHHhCCCccCCcEEEEEecCC
Confidence 99888 899999999999864
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.2e-33 Score=253.26 Aligned_cols=162 Identities=22% Similarity=0.437 Sum_probs=151.2
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
..++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++...+.+++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999999999889999999999999999999999 78999999999999987
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHH
Q 011893 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~ 161 (475)
++.. ....++|||.|||.++++++|+++|++||.|+++.|++++.+++++++|||+|+++++|+
T Consensus 82 ~~~~----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 145 (168)
T 1b7f_A 82 PGGE----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 145 (168)
T ss_dssp CCSS----------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCcc----------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 6432 234578999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHhcC-ceeCC--eEEEEEEc
Q 011893 162 KVLLKTF-HELNG--KMVEVKRA 181 (475)
Q Consensus 162 ~Al~~~~-~~l~G--r~i~V~~a 181 (475)
+|++.++ +.|.+ ++|+|++|
T Consensus 146 ~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 146 EAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCEecCCCeEEEEEeC
Confidence 9999888 88988 99999986
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=7.1e-33 Score=250.06 Aligned_cols=161 Identities=25% Similarity=0.515 Sum_probs=149.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCC
Q 011893 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~ 82 (475)
.++|||+|||++++|++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|+ ++...+.+++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 589999999999999999999999999999999999989999999999999999999999 789999999999999876
Q ss_pred CcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHH
Q 011893 83 RDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162 (475)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~ 162 (475)
.... ...++|||+|||.++++++|+++|++||.|+++.|+.++.+++++++|||+|+++++|++
T Consensus 82 ~~~~----------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ 145 (167)
T 1fxl_A 82 SSAS----------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 145 (167)
T ss_dssp CCGG----------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred Cccc----------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHH
Confidence 5432 235789999999999999999999999999999999999899999999999999999999
Q ss_pred HHHhcC-ceeCCeE--EEEEEc
Q 011893 163 VLLKTF-HELNGKM--VEVKRA 181 (475)
Q Consensus 163 Al~~~~-~~l~Gr~--i~V~~a 181 (475)
|++.++ +.|.++. |+|++|
T Consensus 146 A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 146 AIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCccCCCccceEEEeC
Confidence 999888 8999975 888775
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=4.3e-32 Score=247.10 Aligned_cols=163 Identities=21% Similarity=0.419 Sum_probs=143.3
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCC--CcccEEEEEEcCHHHHHHHH--HcCcccC---CeEEE
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATG--RARGFGFIVFADPAVAERVV--MQKHMID---GRTVE 76 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG--~srG~aFVeF~s~e~A~~Al--~~~~~i~---gr~v~ 76 (475)
+.++|||+|||+++||++|+++|++||+|++|+|++++.++ +++|||||+|.++++|++|+ ++...+. .+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 67999999999999999999999999999999999998776 89999999999999999999 6665554 56777
Q ss_pred EeecCCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecC
Q 011893 77 AKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156 (475)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s 156 (475)
+.++.++.. .....++|||+|||+++|+++|+++|++||.|++|.|++++. ++++|||||+|++
T Consensus 82 ~~~~~~~~~---------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~ 145 (175)
T 3nmr_A 82 MKPADSEKN---------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTT 145 (175)
T ss_dssp EEECGGGCC---------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESS
T ss_pred Ecccccccc---------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECC
Confidence 776654322 123567899999999999999999999999999999999964 8999999999999
Q ss_pred HHHHHHHHHhcC-ceeC---CeEEEEEEcc
Q 011893 157 EEAVDKVLLKTF-HELN---GKMVEVKRAV 182 (475)
Q Consensus 157 ~e~A~~Al~~~~-~~l~---Gr~i~V~~a~ 182 (475)
+++|++|++.++ ..+. +++|.|++|.
T Consensus 146 ~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 146 RAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999988 5565 4999999974
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.98 E-value=2.6e-31 Score=247.34 Aligned_cols=178 Identities=21% Similarity=0.398 Sum_probs=148.5
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhc----C-------CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCccc
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAF----G-------EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMI 70 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~----G-------~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i 70 (475)
...++|||+|||+++||++|+++|++| + .|.++.+. +++|||||+|.++++|++|| ++.+.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 457999999999999999999999999 4 55555553 45799999999999999999 889999
Q ss_pred CCeEEEEeecCCCcchhccccCCC----CCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCcc
Q 011893 71 DGRTVEAKKAVPRDDQNIQNRNNS----SIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRP 146 (475)
Q Consensus 71 ~gr~v~V~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~ 146 (475)
.+++|+|.++.............. ...........++|||+|||+++++++|+++|++||.|++|.|++++.++++
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 999999999876543222111100 1111223356789999999999999999999999999999999999989999
Q ss_pred ceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccCCCC
Q 011893 147 RGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKEL 186 (475)
Q Consensus 147 kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~k~~ 186 (475)
+|||||+|+++++|++|++.++ +.|+|++|+|.+++++..
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999999888 899999999999988764
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=2.8e-31 Score=241.64 Aligned_cols=158 Identities=22% Similarity=0.443 Sum_probs=142.7
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhc----C-------CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCccc
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAF----G-------EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMI 70 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~----G-------~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i 70 (475)
++.++|||+|||+++||++|+++|++| | +|.++.+.+ +++||||+|.++++|++|+ ++.+.+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 467999999999999999999999999 6 677777654 3699999999999999999 889999
Q ss_pred CCeEEEEeecCCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEE
Q 011893 71 DGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFG 150 (475)
Q Consensus 71 ~gr~v~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~a 150 (475)
.+++|+|.++..... ....++|||+|||+++|+++|+++|++||.|++|.|++++.+++++|+|
T Consensus 76 ~g~~i~v~~~~~~~~----------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~a 139 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 139 (172)
T ss_dssp TTEECEEECCSSCCC----------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEE
T ss_pred cCceeeecCCcccCC----------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEE
Confidence 999999988654321 1336889999999999999999999999999999999999899999999
Q ss_pred EEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011893 151 FITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 151 FV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
||+|+++++|++|++.++ +.|+|++|+|++|.
T Consensus 140 fV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 140 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999888 89999999999973
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=6e-32 Score=247.29 Aligned_cols=163 Identities=21% Similarity=0.329 Sum_probs=144.0
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecC
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~ 81 (475)
.+.++|||+|||+++++++|+++|++|++|.. .+++++.+++++|||||+|.++++|++|| ++...|.+++|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCC
Confidence 46789999999999999999999999998877 34445457889999999999999999999 88899999999999987
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHH
Q 011893 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~ 161 (475)
++... .....++|||+|||.++|+++|+++|++||.|..+ ..+++++|||||+|+++++|+
T Consensus 90 ~~~~~--------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~ 150 (175)
T 1fje_B 90 GRDSK--------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAE 150 (175)
T ss_dssp CSSCS--------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHH
T ss_pred Ccccc--------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHH
Confidence 65332 22456899999999999999999999999987665 456889999999999999999
Q ss_pred HHHHhcC-ceeCCeEEEEEEccCCC
Q 011893 162 KVLLKTF-HELNGKMVEVKRAVPKE 185 (475)
Q Consensus 162 ~Al~~~~-~~l~Gr~i~V~~a~~k~ 185 (475)
+|++.++ +.|+|++|+|+++.+|+
T Consensus 151 ~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 151 KNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HHHHHHTEEEETTEEEEEEECSSCC
T ss_pred HHHHHhCCCEECCeEEEEEecCCCC
Confidence 9999988 89999999999998864
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=4.5e-30 Score=253.35 Aligned_cols=171 Identities=13% Similarity=0.222 Sum_probs=156.2
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|+ ++...+.+++|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35689999999999999999999999999999999999889999999999999999999999 8899999999999998
Q ss_pred CCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCC-CHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHH
Q 011893 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTV-TESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~-teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~ 159 (475)
.++.... .....++|||+|||+++ |+++|+++|++||.|++|.|+.++ +++++++|||+|+++++
T Consensus 173 ~~~~~~~-------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~ 238 (284)
T 3smz_A 173 DAGQLTP-------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEM 238 (284)
T ss_dssp CGGGCCT-------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHH
T ss_pred CCCCCCc-------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHH
Confidence 7643321 22456889999999995 999999999999999999999987 58999999999999999
Q ss_pred HHHHHHhcC-ceeCCeEEEEEEccCCCCC
Q 011893 160 VDKVLLKTF-HELNGKMVEVKRAVPKELS 187 (475)
Q Consensus 160 A~~Al~~~~-~~l~Gr~i~V~~a~~k~~~ 187 (475)
|++|++.++ +.|.|++|.|.++.+++.+
T Consensus 239 A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 239 AEEAQQQADGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCSSSCH
T ss_pred HHHHHHHhCCCccCCeEEEEEEecCCCcc
Confidence 999999888 8999999999999887753
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.1e-29 Score=250.40 Aligned_cols=172 Identities=16% Similarity=0.283 Sum_probs=143.5
Q ss_pred CcCcEEEEcCCCCCCcHHHHH----HHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEE
Q 011893 3 MELGKLFIGGISWDTNEDRLR----DYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVE 76 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLk----e~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~ 76 (475)
...++|||+|||++++|++|+ ++|++||+|++|+|++ ++++||||||+|.+.++|++|| ++...|.+++|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 457899999999999999977 8999999999999887 6789999999999999999999 889999999999
Q ss_pred EeecCCCcchhccccCCC--------------------------------------------------------------
Q 011893 77 AKKAVPRDDQNIQNRNNS-------------------------------------------------------------- 94 (475)
Q Consensus 77 V~~a~~~~~~~~~~~~~~-------------------------------------------------------------- 94 (475)
|.++..+...........
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 999866542100000000
Q ss_pred ---------------------------------CCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecC
Q 011893 95 ---------------------------------SIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDH 141 (475)
Q Consensus 95 ---------------------------------~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~ 141 (475)
...........++|||+|||.++|+++|+++|++||.|++|+|+.++
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 00000122356789999999999999999999999999999999654
Q ss_pred CCCccceEEEEEecCHHHHHHHHHhcC-ceeC-CeEEEEEEcc
Q 011893 142 NTQRPRGFGFITYDSEEAVDKVLLKTF-HELN-GKMVEVKRAV 182 (475)
Q Consensus 142 ~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~-Gr~i~V~~a~ 182 (475)
+|||||+|++.++|++||+.++ ..|. +++|+|.+++
T Consensus 244 -----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 -----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred -----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 5799999999999999999998 8998 9999999985
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=5.8e-30 Score=242.78 Aligned_cols=171 Identities=18% Similarity=0.219 Sum_probs=140.1
Q ss_pred cCcEEEEcCCC-CCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 4 ELGKLFIGGIS-WDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 4 d~~~LfVgnLP-~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
+.++|||+||| +++++++|+++|++||+|++|+|++++ +|||||+|.++++|++|| ++.+.+.+++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 899999999999999999999998863 699999999999999999 8999999999999998
Q ss_pred CCCcchhccc--cC----------CCCCC---------CCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCce--eeEEE
Q 011893 81 VPRDDQNIQN--RN----------NSSIH---------GSPGPARTKKIFVGGLASTVTESDFKKYFDQFGII--TDVVV 137 (475)
Q Consensus 81 ~~~~~~~~~~--~~----------~~~~~---------~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I--~~v~I 137 (475)
..+...+... .. ..... ......+.++|||+|||+++||++|+++|++||.| ++|+|
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 6543211000 00 00000 00012346789999999999999999999999999 89998
Q ss_pred eecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCe----EEEEEEc
Q 011893 138 MYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGK----MVEVKRA 181 (475)
Q Consensus 138 ~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr----~i~V~~a 181 (475)
+.++ ++++++|||+|+++++|.+||+.++ ++|.++ ++.|++|
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8775 4567999999999999999999999 889887 5777765
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=5.2e-30 Score=253.87 Aligned_cols=171 Identities=17% Similarity=0.283 Sum_probs=144.7
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
+.++|||+|||+++++++|+++|++|| +|++|.|++++. +++++||||+|.++++|++|+ ++.+.|.+++|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 468999999999999999999999999 999999999874 889999999999999999999 8999999999999998
Q ss_pred CCCcchhccccCCCCCCCCCCCCCcceeeecCCCCC-CCHHHHHHHHhhcCceeeEEEeecCC-CCccceEEEEEecCHH
Q 011893 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLAST-VTESDFKKYFDQFGIITDVVVMYDHN-TQRPRGFGFITYDSEE 158 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~-~teedL~~~F~~~G~I~~v~I~~d~~-tg~~kG~aFV~F~s~e 158 (475)
.++...... .......++|||+|||+. +|+++|+++|++||.|+.|.|++++. |++++|||||+|.+++
T Consensus 195 ~~~~~~~~~---------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~ 265 (292)
T 2ghp_A 195 NPLEKSKRT---------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKD 265 (292)
T ss_dssp CCC------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHH
T ss_pred CCCcccccc---------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHH
Confidence 866543221 112355689999999999 99999999999999999999999876 6899999999999999
Q ss_pred HHHHHHHhcC-ceeCCeEEEEEEccCCC
Q 011893 159 AVDKVLLKTF-HELNGKMVEVKRAVPKE 185 (475)
Q Consensus 159 ~A~~Al~~~~-~~l~Gr~i~V~~a~~k~ 185 (475)
+|++|| .++ +.|.|++|+|.++++|+
T Consensus 266 ~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 266 SAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp HHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred HHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 999999 887 89999999999998874
No 16
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=9.2e-30 Score=237.82 Aligned_cols=172 Identities=16% Similarity=0.258 Sum_probs=143.8
Q ss_pred CcCcEEEEcCCCC-CCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 3 MELGKLFIGGISW-DTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 3 ~d~~~LfVgnLP~-d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
++.++|||+|||+ ++++++|+++|++||+|++|+|++++ ++||||+|.++++|++|+ ++...+.+++|.|.+
T Consensus 1 m~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 75 (198)
T 1qm9_A 1 MGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 75 (198)
T ss_dssp CCCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEE
Confidence 3679999999999 99999999999999999999999875 689999999999999999 789999999999999
Q ss_pred cCCCcchhccccCC-------------------CCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcC-ceeeEEEee
Q 011893 80 AVPRDDQNIQNRNN-------------------SSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFG-IITDVVVMY 139 (475)
Q Consensus 80 a~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G-~I~~v~I~~ 139 (475)
+..+.......... ..........+.++|||+|||.++++++|+++|++|| .|++|.|+.
T Consensus 76 a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~ 155 (198)
T 1qm9_A 76 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 155 (198)
T ss_dssp CCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS
T ss_pred ecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe
Confidence 87653221110000 0000001123478999999999999999999999999 999999976
Q ss_pred cCCCCccceEEEEEecCHHHHHHHHHhcC-ceeC-CeEEEEEEccCC
Q 011893 140 DHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN-GKMVEVKRAVPK 184 (475)
Q Consensus 140 d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~-Gr~i~V~~a~~k 184 (475)
+ .+++|||+|+++++|++|++.++ +.|. +++|+|.+++++
T Consensus 156 ~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 156 K-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp T-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred C-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 4 26899999999999999999888 8899 999999999874
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=3.1e-29 Score=240.84 Aligned_cols=172 Identities=16% Similarity=0.254 Sum_probs=143.4
Q ss_pred CcCcEEEEcCCCC-CCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 3 MELGKLFIGGISW-DTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 3 ~d~~~LfVgnLP~-d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
.+.++|||+|||+ ++++++|+++|++||+|++|+|++++ ++||||+|.++++|++|| ++...|.+++|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3578999999999 99999999999999999999999975 689999999999999999 889999999999999
Q ss_pred cCCCcchhccccCC----------CC--CCC-------CCCCCCcceeeecCCCCCCCHHHHHHHHhhcC-ceeeEEEee
Q 011893 80 AVPRDDQNIQNRNN----------SS--IHG-------SPGPARTKKIFVGGLASTVTESDFKKYFDQFG-IITDVVVMY 139 (475)
Q Consensus 80 a~~~~~~~~~~~~~----------~~--~~~-------~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G-~I~~v~I~~ 139 (475)
+.++.....+.... .. ... .....+.++|||+|||+++++++|+++|++|| .|++|.|+.
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 87653221110000 00 000 01123468999999999999999999999999 999999975
Q ss_pred cCCCCccceEEEEEecCHHHHHHHHHhcC-ceeC-CeEEEEEEccCC
Q 011893 140 DHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN-GKMVEVKRAVPK 184 (475)
Q Consensus 140 d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~-Gr~i~V~~a~~k 184 (475)
+ .+++|||+|++.++|++||+.++ ..|. +++|+|.+++++
T Consensus 187 ~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 187 K-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp S-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred C-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 3 36799999999999999999888 8999 999999999875
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=8.5e-29 Score=245.17 Aligned_cols=160 Identities=14% Similarity=0.234 Sum_probs=137.9
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeec
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a 80 (475)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+ +++||||+|.++++|++|| ++...+.+++|.|.++
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC
Confidence 356899999999999999999999999999999999998633 5899999999999999999 8889999999999875
Q ss_pred CCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcC-ceeeEEEeecCCCCccceEEEEEecCHHH
Q 011893 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFG-IITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G-~I~~v~I~~d~~tg~~kG~aFV~F~s~e~ 159 (475)
..++|||+|||+++++++|+++|++|| .|+.|.|+.++. +++++||||+|.++++
T Consensus 116 -----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~ 171 (292)
T 2ghp_A 116 -----------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKED 171 (292)
T ss_dssp -----------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHH
T ss_pred -----------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHH
Confidence 257899999999999999999999999 999999999876 7889999999999999
Q ss_pred HHHHHHhcC-ceeCCeEEEEEEccCCCCC
Q 011893 160 VDKVLLKTF-HELNGKMVEVKRAVPKELS 187 (475)
Q Consensus 160 A~~Al~~~~-~~l~Gr~i~V~~a~~k~~~ 187 (475)
|++|++.++ +.|.+++|.|.++.++...
T Consensus 172 a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 172 ARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred HHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 999999777 8999999999999876654
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=2.5e-28 Score=240.84 Aligned_cols=155 Identities=16% Similarity=0.376 Sum_probs=142.9
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
+.++|||+|||+++|+++|+++|++|| |++|.+ ++++|||||+|.++++|++|+ ++...+.+++|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 568999999999999999999999999 999888 346789999999999999999 78899999999998743
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHH
Q 011893 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~ 161 (475)
..++|||+|||+++|+++|+++|++||.|+.|.|+.++.+++++|||||+|.++++|+
T Consensus 94 ----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 151 (284)
T 3smz_A 94 ----------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAA 151 (284)
T ss_dssp ----------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred ----------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHH
Confidence 2368999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC-ceeCCeEEEEEEccCCCCC
Q 011893 162 KVLLKTF-HELNGKMVEVKRAVPKELS 187 (475)
Q Consensus 162 ~Al~~~~-~~l~Gr~i~V~~a~~k~~~ 187 (475)
+|++.++ ..|++++|.|.++.++...
T Consensus 152 ~A~~~l~~~~~~g~~i~v~~a~~~~~~ 178 (284)
T 3smz_A 152 RAKSDLLGKPLGPRTLYVHWTDAGQLT 178 (284)
T ss_dssp HHHHHHTTCEETTEECEEEECCGGGCC
T ss_pred HHHHHhCCCEeCCcEEEEEECCCCCCC
Confidence 9998887 8999999999999876643
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=1.6e-28 Score=240.58 Aligned_cols=157 Identities=25% Similarity=0.419 Sum_probs=142.2
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++|+++|+++|++||+|++|.|.++ +|||||+|.++++|++|+ ++...|.+++|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 34689999999999999999999999999999999764 589999999999999999 7899999999999987
Q ss_pred CCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHH
Q 011893 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A 160 (475)
.+ .++|||+|||..+|+++|+++|++||.|++|.|+.| .+++++|||||+|++.++|
T Consensus 94 ~~----------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 94 TH----------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp CC----------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHH
T ss_pred cc----------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHH
Confidence 53 368999999999999999999999999999999999 5799999999999999999
Q ss_pred HHHHHhcC--ceeC---CeEEEEEEccCCCCCC
Q 011893 161 DKVLLKTF--HELN---GKMVEVKRAVPKELSP 188 (475)
Q Consensus 161 ~~Al~~~~--~~l~---Gr~i~V~~a~~k~~~~ 188 (475)
.+||+.++ ..+. +++|.|+++.+.+...
T Consensus 151 ~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~~~ 183 (261)
T 3sde_A 151 RKALERCGDGAFLLTTTPRPVIVEPMEQFDDED 183 (261)
T ss_dssp HHHHHHHHHSCEESSSSCCBCEEEECCCEESSS
T ss_pred HHHHHHhcCCeEEecCCCceEEEeeccccCccC
Confidence 99999984 3444 9999999998765443
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=4.4e-23 Score=186.39 Aligned_cols=150 Identities=16% Similarity=0.198 Sum_probs=114.5
Q ss_pred EEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCCCcchhccccCCCCCCCCCCCCCcceeeec
Q 011893 34 EAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVG 111 (475)
Q Consensus 34 ~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~ 111 (475)
+++|+.+.. +++|||||+|.++++|++|+ ++........+.+........... ..............++|||+
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~v~ 76 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE---GSHHHHHHMDVEGMTSLKVD 76 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC---CCCCSSCCCCCCBCCEEEEE
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc---cccccccccCCCCCCEEEEe
Confidence 567777753 68999999999999999999 332222233333332222111111 11111122234567899999
Q ss_pred CCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccCCCCCC
Q 011893 112 GLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKELSP 188 (475)
Q Consensus 112 nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~k~~~~ 188 (475)
|||+++|++||+++|++||.|++|.|++|+.+++++|||||+|+++++|++||+.++ +.|.+++|+|++++++..++
T Consensus 77 nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 77 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp SCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999888 89999999999998875543
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=3.2e-21 Score=173.01 Aligned_cols=136 Identities=18% Similarity=0.263 Sum_probs=112.9
Q ss_pred CCcccEEEEEEcCHHHHHHHH--H-cCcccCCeEEEEeecCCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHH
Q 011893 44 GRARGFGFIVFADPAVAERVV--M-QKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120 (475)
Q Consensus 44 G~srG~aFVeF~s~e~A~~Al--~-~~~~i~gr~v~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~tee 120 (475)
.+.+|+++|+|.++++|++|+ + +...+++ .|.+.++..+......................++|||+|||+++|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 367899999999999999999 5 8899999 99999876644332221222222223344567899999999999999
Q ss_pred HHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccCCC
Q 011893 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKE 185 (475)
Q Consensus 121 dL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~k~ 185 (475)
+|+++|++||.|++|.|+++ ++|||||+|+++++|++||+.++ +.|++++|+|++++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999876 58899999999999999999877 89999999999998864
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=2.1e-21 Score=166.95 Aligned_cols=108 Identities=21% Similarity=0.453 Sum_probs=73.6
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
..++|||+|||+++||++|+++|++||+|++|+|++++ +++||||||+|+++++|++|| ++.+.|++++|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45799999999999999999999999999999999985 458999999999999999999 79999999999999998
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHH
Q 011893 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESD 121 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teed 121 (475)
++..+..... .......+|||+|||+++|++-
T Consensus 82 ~~~~~~~~~~--------~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELG--------ARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC------------------------------------
T ss_pred Cccccccccc--------cccCCCCceEeCCCCCCccccc
Confidence 7654332211 1223446799999999999874
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=151.00 Aligned_cols=80 Identities=19% Similarity=0.417 Sum_probs=76.7
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011893 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
+.++|||+|||+++|++||+++|++||.|++|+|++|+.++++||||||+|+++++|++||+.++ +.|+|++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45689999999999999999999999999999999999999999999999999999999999888 89999999999997
Q ss_pred C
Q 011893 183 P 183 (475)
Q Consensus 183 ~ 183 (475)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 25
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=2.5e-20 Score=195.68 Aligned_cols=86 Identities=23% Similarity=0.490 Sum_probs=80.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
...++|||.|||+.||+++|+++|++||.|+.|.|+.++.+++++|||||+|+++++|++||+.|+ ++|++++|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999999999999999999999999999999988 8999999999999
Q ss_pred cCCCCCC
Q 011893 182 VPKELSP 188 (475)
Q Consensus 182 ~~k~~~~ 188 (475)
.++....
T Consensus 180 ~~~~~~~ 186 (437)
T 3pgw_S 180 RGRTVKG 186 (437)
T ss_pred CCCCCCC
Confidence 9876543
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=149.41 Aligned_cols=80 Identities=25% Similarity=0.525 Sum_probs=76.3
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| +++..|.+++|+|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35689999999999999999999999999999999999999999999999999999999999 7999999999999998
Q ss_pred CC
Q 011893 81 VP 82 (475)
Q Consensus 81 ~~ 82 (475)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 27
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=153.85 Aligned_cols=89 Identities=24% Similarity=0.511 Sum_probs=82.7
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEE
Q 011893 100 PGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEV 178 (475)
Q Consensus 100 ~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V 178 (475)
+.....++|||+|||+++|++||+++|++||.|++|+|++++.+++++|||||+|+++++|++||+.++ +.|++++|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345567899999999999999999999999999999999999999999999999999999999999888 8999999999
Q ss_pred EEccCCCCCC
Q 011893 179 KRAVPKELSP 188 (475)
Q Consensus 179 ~~a~~k~~~~ 188 (475)
++++++..++
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9999876654
No 28
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=6.1e-19 Score=159.16 Aligned_cols=86 Identities=17% Similarity=0.319 Sum_probs=80.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
...++|||.|||+++|++||+++|++||.|++|.|+.++.++++++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999999999999999999999999999999999888 8999999999999
Q ss_pred cCCCCCC
Q 011893 182 VPKELSP 188 (475)
Q Consensus 182 ~~k~~~~ 188 (475)
+++...+
T Consensus 117 ~~~~~~~ 123 (156)
T 1h2v_Z 117 AGFKEGR 123 (156)
T ss_dssp SCCCTTC
T ss_pred CCCCCcC
Confidence 8866543
No 29
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=148.36 Aligned_cols=83 Identities=18% Similarity=0.344 Sum_probs=77.3
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcC-ceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC--ceeCCeEEEEEEc
Q 011893 105 TKKIFVGGLASTVTESDFKKYFDQFG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF--HELNGKMVEVKRA 181 (475)
Q Consensus 105 ~~~LfV~nLp~~~teedL~~~F~~~G-~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~--~~l~Gr~i~V~~a 181 (475)
+++|||+|||+++||+||+++|++|| +|++|+|++|+.++++||||||+|+++++|++||+.++ ..|+|++|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999999764 5799999999999
Q ss_pred cCCCCC
Q 011893 182 VPKELS 187 (475)
Q Consensus 182 ~~k~~~ 187 (475)
.|++..
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887654
No 30
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.6e-18 Score=147.21 Aligned_cols=88 Identities=31% Similarity=0.535 Sum_probs=81.7
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEE
Q 011893 100 PGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179 (475)
Q Consensus 100 ~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~ 179 (475)
......++|||.|||+++|++||+++|++||.|++|+|++++.++++++||||+|+++++|++||+.++.+|++++|+|+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~ 91 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVN 91 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred EccCCCCC
Q 011893 180 RAVPKELS 187 (475)
Q Consensus 180 ~a~~k~~~ 187 (475)
++.++...
T Consensus 92 ~a~~~~~~ 99 (116)
T 2cqd_A 92 LAYLGAKP 99 (116)
T ss_dssp ESTTTCCC
T ss_pred EcccCCCc
Confidence 99876543
No 31
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=144.84 Aligned_cols=89 Identities=45% Similarity=0.926 Sum_probs=81.3
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~ 180 (475)
.....++|||+|||++++++||+++|++||.|++|.|++++.++++++||||+|+++++|++||++..+.|++++|+|++
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 85 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999433899999999999
Q ss_pred ccCCCCCCC
Q 011893 181 AVPKELSPG 189 (475)
Q Consensus 181 a~~k~~~~~ 189 (475)
++++..+..
T Consensus 86 a~~~~~~~~ 94 (99)
T 2dgs_A 86 AEPRDSKSS 94 (99)
T ss_dssp CCCCCCCCC
T ss_pred CCCCcccCC
Confidence 998876543
No 32
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=1.8e-18 Score=147.97 Aligned_cols=88 Identities=20% Similarity=0.347 Sum_probs=81.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||+|||++++++||+++|++||.|++|+|++++.++++++||||+|+++++|++||+.++ ++|++++|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999999888 899999999999
Q ss_pred ccCCCCCCC
Q 011893 181 AVPKELSPG 189 (475)
Q Consensus 181 a~~k~~~~~ 189 (475)
++++..++.
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpz_A 102 KRSKNDSKS 110 (115)
T ss_dssp CCCSCCCCC
T ss_pred cCCCCcCCC
Confidence 998776543
No 33
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=148.47 Aligned_cols=83 Identities=13% Similarity=0.295 Sum_probs=78.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
.+.++|||+|||++++|++|+++|++||.|++|+|++|+.++++||||||+|+++++|++||+.++ ++|+|++|+|++|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999999999999999999999999999999988 8999999999999
Q ss_pred cCCC
Q 011893 182 VPKE 185 (475)
Q Consensus 182 ~~k~ 185 (475)
..++
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 6654
No 34
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=142.85 Aligned_cols=86 Identities=29% Similarity=0.541 Sum_probs=80.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
...++|||+|||+++++++|+++|++||.|++|.|++++.++++++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 456899999999999999999999999999999999999999999999999999999999999888 8999999999999
Q ss_pred cCCCCCC
Q 011893 182 VPKELSP 188 (475)
Q Consensus 182 ~~k~~~~ 188 (475)
+++....
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 8876543
No 35
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=1.2e-18 Score=159.02 Aligned_cols=138 Identities=13% Similarity=0.225 Sum_probs=80.0
Q ss_pred EEEcCHHHHHHHH--HcCcccC--CeEEEEeecCCCcchhccc----cCCCCCCCCCCCCCcceeeecCCCCCCCHHHHH
Q 011893 52 IVFADPAVAERVV--MQKHMID--GRTVEAKKAVPRDDQNIQN----RNNSSIHGSPGPARTKKIFVGGLASTVTESDFK 123 (475)
Q Consensus 52 VeF~s~e~A~~Al--~~~~~i~--gr~v~V~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~ 123 (475)
.+|.+.++|+.++ ++..... ++.+.+.++.......... ........+......++|||.|||+.+|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6788999998888 3332222 4444443322111000000 000011122234556899999999999999999
Q ss_pred HHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccCCCCCCC
Q 011893 124 KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKELSPG 189 (475)
Q Consensus 124 ~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~k~~~~~ 189 (475)
++|++||.|+.|.|+.++.+++++|||||+|.+.++|++||+.++ +.|.+++|.|.++.++..+..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~ 157 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRV 157 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC----
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCC
Confidence 999999999999999999999999999999999999999999888 899999999999988776543
No 36
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=144.91 Aligned_cols=88 Identities=28% Similarity=0.506 Sum_probs=82.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||+|||+++|+++|+++|++||.|++|.|++++.++++++||||+|+++++|++||+.++ +.|++++|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 3567899999999999999999999999999999999999999999999999999999999999888 899999999999
Q ss_pred ccCCCCCCC
Q 011893 181 AVPKELSPG 189 (475)
Q Consensus 181 a~~k~~~~~ 189 (475)
++++..+..
T Consensus 89 a~~~~~~~~ 97 (102)
T 2cqb_A 89 AKPMRIKES 97 (102)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 998876553
No 37
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-18 Score=144.19 Aligned_cols=88 Identities=23% Similarity=0.403 Sum_probs=82.0
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||+++++++|+++|++||.|++|.|++++.++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred EccCCCCCC
Q 011893 180 RAVPKELSP 188 (475)
Q Consensus 180 ~a~~k~~~~ 188 (475)
+++++..+.
T Consensus 91 ~a~~~~~~~ 99 (103)
T 2cq0_A 91 WAKPSTNSG 99 (103)
T ss_dssp ESSCCCCSC
T ss_pred ECCCCCCCC
Confidence 998876543
No 38
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3e-18 Score=142.45 Aligned_cols=86 Identities=26% Similarity=0.460 Sum_probs=80.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||+|||+++|+++|+++|++||.|++|.|++++.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999999999999899999999999999999999998888 899999999999
Q ss_pred ccCCCCC
Q 011893 181 AVPKELS 187 (475)
Q Consensus 181 a~~k~~~ 187 (475)
++++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9887654
No 39
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=144.90 Aligned_cols=88 Identities=26% Similarity=0.383 Sum_probs=82.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999988 89999999999
Q ss_pred EccCCCCCC
Q 011893 180 RAVPKELSP 188 (475)
Q Consensus 180 ~a~~k~~~~ 188 (475)
+++++....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 1x5u_A 91 KASAHNKNL 99 (105)
T ss_dssp ETTTTSCCC
T ss_pred ECCCCCcCC
Confidence 998876544
No 40
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=145.14 Aligned_cols=88 Identities=30% Similarity=0.589 Sum_probs=81.7
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||+++|+++|+++|++||.|++|.|++++.++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999998888 89999999999
Q ss_pred EccCCCCCC
Q 011893 180 RAVPKELSP 188 (475)
Q Consensus 180 ~a~~k~~~~ 188 (475)
+++++...+
T Consensus 88 ~a~~~~~~~ 96 (102)
T 1x5s_A 88 QAGKSSDNR 96 (102)
T ss_dssp EEECCCCCC
T ss_pred ECCCCCCCC
Confidence 998877654
No 41
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-18 Score=142.42 Aligned_cols=86 Identities=26% Similarity=0.430 Sum_probs=80.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeE-EEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDV-VVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v-~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
...++|||+|||+++|+++|+++|++||.|++| .|++++.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999 999999999999999999999999999999888 899999999999
Q ss_pred ccCCCCCC
Q 011893 181 AVPKELSP 188 (475)
Q Consensus 181 a~~k~~~~ 188 (475)
++++..+.
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98877544
No 42
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=5.4e-18 Score=144.87 Aligned_cols=88 Identities=26% Similarity=0.482 Sum_probs=82.2
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||++++++||+++|++||.|++|.|++++.++++++||||+|+++++|++||+.++ +.|++++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999888 89999999999
Q ss_pred EccCCCCCC
Q 011893 180 RAVPKELSP 188 (475)
Q Consensus 180 ~a~~k~~~~ 188 (475)
+++++...+
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 998877654
No 43
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=145.54 Aligned_cols=88 Identities=19% Similarity=0.350 Sum_probs=81.6
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||++++++||+++|++||.|++|.|+.++.++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999887 89999999999
Q ss_pred EccCCCCCC
Q 011893 180 RAVPKELSP 188 (475)
Q Consensus 180 ~a~~k~~~~ 188 (475)
+++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dnm_A 89 VARYGRRDL 97 (103)
T ss_dssp ECSSCCSCC
T ss_pred ECCcCCCCC
Confidence 998866544
No 44
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=4.5e-19 Score=156.84 Aligned_cols=87 Identities=18% Similarity=0.348 Sum_probs=80.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||+|||+++|++||+++|++||.|++|.|+.++.+++++|||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999999888 899999999999
Q ss_pred ccCCCCCC
Q 011893 181 AVPKELSP 188 (475)
Q Consensus 181 a~~k~~~~ 188 (475)
++++..++
T Consensus 124 a~~~~~~~ 131 (135)
T 2lea_A 124 ARYGRPPD 131 (135)
T ss_dssp CCCCCCCT
T ss_pred CCCCCCCc
Confidence 98866544
No 45
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.7e-18 Score=141.09 Aligned_cols=90 Identities=30% Similarity=0.471 Sum_probs=81.9
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~ 180 (475)
.....++|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|+++++|++||+. .+.|+|++|+|++
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEe
Confidence 345678999999999999999999999999999999999999999999999999999999999994 4799999999999
Q ss_pred ccCCCCCCCCC
Q 011893 181 AVPKELSPGPS 191 (475)
Q Consensus 181 a~~k~~~~~~~ 191 (475)
+.+++....+.
T Consensus 90 a~~~~~~~~~~ 100 (103)
T 2cqg_A 90 PNSKQSQDSGP 100 (103)
T ss_dssp CCTTCCCCCSS
T ss_pred cCCCCcCCCCC
Confidence 99987765443
No 46
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=144.73 Aligned_cols=89 Identities=35% Similarity=0.730 Sum_probs=82.0
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~ 180 (475)
.....++|||+|||+++++++|+++|++||.|++|.|++++.+++++|||||+|+++++|++||+...+.|++++|+|++
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 44667899999999999999999999999999999999999999999999999999999999999933899999999999
Q ss_pred ccCCCCCCC
Q 011893 181 AVPKELSPG 189 (475)
Q Consensus 181 a~~k~~~~~ 189 (475)
++++...+.
T Consensus 92 a~~~~~~~~ 100 (105)
T 2dh8_A 92 CTPRGMQPS 100 (105)
T ss_dssp SCCSSCCTT
T ss_pred ccCCCCCCC
Confidence 998876543
No 47
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.7e-18 Score=141.14 Aligned_cols=86 Identities=16% Similarity=0.428 Sum_probs=79.6
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||+++|++||+++|++||.|++|.|+.++ ++++++||||+|+++++|++||+.++ +.|++++|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 79999999999999999999999888 89999999999
Q ss_pred EccCCCCC
Q 011893 180 RAVPKELS 187 (475)
Q Consensus 180 ~a~~k~~~ 187 (475)
+++++..+
T Consensus 92 ~a~~~~~~ 99 (100)
T 2do4_A 92 ISNSGPSS 99 (100)
T ss_dssp ECCCCSCC
T ss_pred ECCCCCCC
Confidence 99887643
No 48
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=146.43 Aligned_cols=84 Identities=19% Similarity=0.321 Sum_probs=78.8
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||++++|++|+++|++||+|++|+|++|+.|+++||||||+|+++++|++|| ++...|++++|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999 8999999999999998
Q ss_pred CCCcch
Q 011893 81 VPRDDQ 86 (475)
Q Consensus 81 ~~~~~~ 86 (475)
......
T Consensus 84 ~~~~~~ 89 (110)
T 3s8s_A 84 IKGQQR 89 (110)
T ss_dssp STTHHH
T ss_pred CCCcHH
Confidence 765443
No 49
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=5.9e-19 Score=145.36 Aligned_cols=81 Identities=23% Similarity=0.422 Sum_probs=74.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--H-cCcccCCeEEEEeec
Q 011893 5 LGKLFIGGISWDTNEDRLRDYFQAFG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--M-QKHMIDGRTVEAKKA 80 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~-~~~~i~gr~v~V~~a 80 (475)
+++|||+|||+++||+||+++|++|| +|++|+|++++.++++||||||+|.++++|++|| + +...+.+|+|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 8999999999999999999999999999999999 2 345799999999999
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
.+++.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 50
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=138.54 Aligned_cols=82 Identities=24% Similarity=0.457 Sum_probs=75.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
...++|||+|||.+++++||+++|++||.|++|.|+.++.++++++||||+|+++++|++|++.++ +.|++++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 456899999999999999999999999999999999999899999999999999999999999887 8999999999999
Q ss_pred cCC
Q 011893 182 VPK 184 (475)
Q Consensus 182 ~~k 184 (475)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 876
No 51
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.6e-18 Score=142.82 Aligned_cols=85 Identities=22% Similarity=0.384 Sum_probs=78.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCC-CccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNT-QRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~t-g~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
....++|||+|||+++|++||+++|++|| |++|.|++++.+ ++++|||||+|+++++|++|| .++ +.|++++|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35668999999999999999999999999 999999999988 899999999999999999999 666 89999999999
Q ss_pred EccCCCCCC
Q 011893 180 RAVPKELSP 188 (475)
Q Consensus 180 ~a~~k~~~~ 188 (475)
+++++..+.
T Consensus 90 ~a~~~~~~~ 98 (104)
T 1wi8_A 90 VADQAQDKD 98 (104)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 999877654
No 52
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=4.7e-18 Score=136.40 Aligned_cols=81 Identities=27% Similarity=0.518 Sum_probs=77.4
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccC
Q 011893 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVP 183 (475)
Q Consensus 105 ~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~ 183 (475)
+.+|||+|||+++++++|+++|++||.|++|.|++++.++++++||||+|+++++|++|++.++ +.|+|++|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999999999999999999999999999999887 899999999999988
Q ss_pred CC
Q 011893 184 KE 185 (475)
Q Consensus 184 k~ 185 (475)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 53
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.6e-18 Score=143.18 Aligned_cols=88 Identities=20% Similarity=0.352 Sum_probs=81.5
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeec-CCCCccceEEEEEecCHHHHHHHHHhc-C-ceeCCeEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYD-HNTQRPRGFGFITYDSEEAVDKVLLKT-F-HELNGKMVE 177 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d-~~tg~~kG~aFV~F~s~e~A~~Al~~~-~-~~l~Gr~i~ 177 (475)
.....++|||+|||+++|+++|+++|++||.|++|.|+++ +.++++++||||+|+++++|++||+.+ + +.|++++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4456789999999999999999999999999999999999 788999999999999999999999998 6 899999999
Q ss_pred EEEccCCCCCC
Q 011893 178 VKRAVPKELSP 188 (475)
Q Consensus 178 V~~a~~k~~~~ 188 (475)
|++++++....
T Consensus 91 v~~a~~~~~~~ 101 (107)
T 2cph_A 91 LEWADSEVTVQ 101 (107)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99998876554
No 54
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=8.1e-18 Score=141.07 Aligned_cols=86 Identities=19% Similarity=0.351 Sum_probs=79.0
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||++++++||+++|++|+ |++|.|++++.+++++|||||+|+++++|++|| .++ ++|++++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345678999999999999999999999996 999999999999999999999999999999999 666 89999999999
Q ss_pred EccCCCCCC
Q 011893 180 RAVPKELSP 188 (475)
Q Consensus 180 ~a~~k~~~~ 188 (475)
+++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dng_A 89 IAEGRKQDK 97 (103)
T ss_dssp ECCCCCCCC
T ss_pred EecCCCCCC
Confidence 998876543
No 55
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=4e-18 Score=143.45 Aligned_cols=88 Identities=25% Similarity=0.392 Sum_probs=80.9
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-cee---CCeEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL---NGKMV 176 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l---~Gr~i 176 (475)
.....++|||+|||+++|++||+++|++||.|++|.|+.++.++++++||||+|+++++|++||+.++ ..+ .+++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 44567899999999999999999999999999999999999999999999999999999999999888 676 88999
Q ss_pred EEEEccCCCCCC
Q 011893 177 EVKRAVPKELSP 188 (475)
Q Consensus 177 ~V~~a~~k~~~~ 188 (475)
+|++++++..+.
T Consensus 89 ~v~~a~~~~~~~ 100 (106)
T 2dgp_A 89 QVKPADSESRGG 100 (106)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEECCcccccC
Confidence 999998876543
No 56
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.3e-18 Score=141.21 Aligned_cols=86 Identities=24% Similarity=0.427 Sum_probs=79.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCC---CCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEE
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHN---TQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEV 178 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~---tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V 178 (475)
.+.++|||+|||+++|+++|+++|++||.|++|.|+.++. ++++++||||+|+++++|++||+.++ +.|++++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999999887 66899999999999999999999988 8999999999
Q ss_pred EEccCCCCCC
Q 011893 179 KRAVPKELSP 188 (475)
Q Consensus 179 ~~a~~k~~~~ 188 (475)
++++++....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998876544
No 57
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.3e-18 Score=142.91 Aligned_cols=89 Identities=24% Similarity=0.406 Sum_probs=81.8
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-------ceeCC
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-------HELNG 173 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-------~~l~G 173 (475)
.....++|||+|||+++|+++|+++|++||.|++|.|++|+.++++++||||+|+++++|++||+.++ +.|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999874 68999
Q ss_pred eEEEEEEccCCCCCCC
Q 011893 174 KMVEVKRAVPKELSPG 189 (475)
Q Consensus 174 r~i~V~~a~~k~~~~~ 189 (475)
++|+|++++++.....
T Consensus 91 ~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAAS 106 (111)
T ss_dssp CEEEEECCCCCCCCCC
T ss_pred EEEEEEECCCCccCCC
Confidence 9999999998776543
No 58
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=4.8e-18 Score=137.84 Aligned_cols=81 Identities=40% Similarity=0.749 Sum_probs=76.3
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~ 180 (475)
.....++|||+|||+++++++|+++|++||.|++|.|++++.+++++|||||+|+++++|++||+.++++|+|++|+|++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999998877899999999998
Q ss_pred c
Q 011893 181 A 181 (475)
Q Consensus 181 a 181 (475)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 59
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=144.57 Aligned_cols=82 Identities=18% Similarity=0.331 Sum_probs=75.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCc--eeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-c----eeCCe
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGI--ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-H----ELNGK 174 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~--I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~----~l~Gr 174 (475)
....++|||+|||+++|+++|+++|++||. |++|+|++|+.++++||||||+|+++++|++||+.++ . .|+||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 356789999999999999999999999995 6799999999999999999999999999999999876 3 59999
Q ss_pred EEEEEEccC
Q 011893 175 MVEVKRAVP 183 (475)
Q Consensus 175 ~i~V~~a~~ 183 (475)
+|.|++|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999974
No 60
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.5e-18 Score=141.52 Aligned_cols=87 Identities=26% Similarity=0.416 Sum_probs=80.2
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||+++|+++|+++|++||.|++|.|+.+ ++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456789999999999999999999999999999999998 78999999999999999999999888 89999999999
Q ss_pred EccCCCCCCC
Q 011893 180 RAVPKELSPG 189 (475)
Q Consensus 180 ~a~~k~~~~~ 189 (475)
+++++..+..
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2d9p_A 89 LAQRKEERQS 98 (103)
T ss_dssp ECSSCCCCCC
T ss_pred EecccccCCC
Confidence 9998876553
No 61
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=9.6e-19 Score=168.40 Aligned_cols=82 Identities=18% Similarity=0.303 Sum_probs=76.7
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcC--ceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 104 RTKKIFVGGLASTVTESDFKKYFDQFG--IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G--~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
..++|||+|||+++||++|+++|++|| .|++|+|++|+.++++||||||+|+++++|++||+.++ ++|++++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999999999999999999999999999999888 899999999999
Q ss_pred ccCCC
Q 011893 181 AVPKE 185 (475)
Q Consensus 181 a~~k~ 185 (475)
|+++.
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 97643
No 62
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=4.6e-18 Score=144.62 Aligned_cols=87 Identities=40% Similarity=0.735 Sum_probs=79.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEc
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a 181 (475)
....++|||+|||+++|+++|+++|++||.|++|.|++++.+++++|||||+|+++++|++||+.+++.|+|++|+|+++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 35678999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred cCCCCCC
Q 011893 182 VPKELSP 188 (475)
Q Consensus 182 ~~k~~~~ 188 (475)
.+++.++
T Consensus 102 ~~~~~~~ 108 (109)
T 2rs2_A 102 FPRRAQP 108 (109)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9877653
No 63
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.2e-18 Score=138.14 Aligned_cols=83 Identities=28% Similarity=0.534 Sum_probs=78.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.+.+.++|||.|||+++++++|+++|++||.|++|.|++++.++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44677899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred EccC
Q 011893 180 RAVP 183 (475)
Q Consensus 180 ~a~~ 183 (475)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 64
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=145.97 Aligned_cols=86 Identities=42% Similarity=0.762 Sum_probs=80.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEcc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~ 182 (475)
...++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|+++++|++||+...+.|++++|+|++++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 34689999999999999999999999999999999999999999999999999999999999994489999999999999
Q ss_pred CCCCCC
Q 011893 183 PKELSP 188 (475)
Q Consensus 183 ~k~~~~ 188 (475)
++....
T Consensus 105 ~~~~~~ 110 (116)
T 1x4b_A 105 AREESG 110 (116)
T ss_dssp SCCCCC
T ss_pred CCccCC
Confidence 887654
No 65
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.7e-18 Score=140.84 Aligned_cols=84 Identities=44% Similarity=0.786 Sum_probs=79.1
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecC
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~ 81 (475)
.+.++|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|.++++|++|| ++.+.|.+++|+|+++.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 56799999999999999999999999999999999999989999999999999999999999 89999999999999998
Q ss_pred CCcch
Q 011893 82 PRDDQ 86 (475)
Q Consensus 82 ~~~~~ 86 (475)
++...
T Consensus 88 ~~~~~ 92 (99)
T 2dgs_A 88 PRDSK 92 (99)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 76543
No 66
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=1.2e-18 Score=142.75 Aligned_cols=83 Identities=19% Similarity=0.296 Sum_probs=71.5
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcC--ceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011893 106 KKIFVGGLASTVTESDFKKYFDQFG--IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 106 ~~LfV~nLp~~~teedL~~~F~~~G--~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
.+|||+|||+++|++||+++|++|| .|++|.|+.|+.++++||||||+|+++++|++||+.++ ++|+|++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999888 89999999999998
Q ss_pred CCCCCC
Q 011893 183 PKELSP 188 (475)
Q Consensus 183 ~k~~~~ 188 (475)
++...+
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 876544
No 67
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=5.6e-18 Score=143.62 Aligned_cols=87 Identities=16% Similarity=0.299 Sum_probs=80.9
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||+++|+++|+++|++||.|++|.|+.++.++++++||||+|+++++|++||+.++ +.|+|++|+|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999887 89999999999
Q ss_pred EccCCCCC
Q 011893 180 RAVPKELS 187 (475)
Q Consensus 180 ~a~~k~~~ 187 (475)
+++++..+
T Consensus 102 ~a~~~~~~ 109 (110)
T 1oo0_B 102 WCFVKGPK 109 (110)
T ss_dssp ESEESSCC
T ss_pred EcccCCCC
Confidence 99887643
No 68
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.1e-18 Score=140.95 Aligned_cols=84 Identities=38% Similarity=0.728 Sum_probs=78.8
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHcCcccCCeEEEEeecCC
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al~~~~~i~gr~v~V~~a~~ 82 (475)
.+.++|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++||.+.+.|++++|.|+++.+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCC
Confidence 46789999999999999999999999999999999999989999999999999999999999888899999999999987
Q ss_pred Ccch
Q 011893 83 RDDQ 86 (475)
Q Consensus 83 ~~~~ 86 (475)
+...
T Consensus 93 ~~~~ 96 (103)
T 2cqg_A 93 KQSQ 96 (103)
T ss_dssp TCCC
T ss_pred CCcC
Confidence 6543
No 69
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=1.2e-17 Score=142.66 Aligned_cols=85 Identities=26% Similarity=0.511 Sum_probs=79.4
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++.+.|.+++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 46789999999999999999999999999999999999889999999999999999999999 6889999999999999
Q ss_pred CCCcchh
Q 011893 81 VPRDDQN 87 (475)
Q Consensus 81 ~~~~~~~ 87 (475)
.++....
T Consensus 93 ~~~~~~~ 99 (115)
T 2dgo_A 93 TRKPPAP 99 (115)
T ss_dssp SCCCCCS
T ss_pred cCCCCCC
Confidence 8766543
No 70
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.3e-18 Score=140.07 Aligned_cols=85 Identities=24% Similarity=0.478 Sum_probs=79.6
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
..+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++.+.|.+++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356899999999999999999999999999999999999889999999999999999999999 788999999999999
Q ss_pred cCCCcch
Q 011893 80 AVPRDDQ 86 (475)
Q Consensus 80 a~~~~~~ 86 (475)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876554
No 71
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=138.70 Aligned_cols=87 Identities=24% Similarity=0.560 Sum_probs=79.2
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||+++|+++|+++|++||.|++|.|+.++. .+++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 445678999999999999999999999999999999998865 389999999999999999999887 89999999999
Q ss_pred EccCCCCCCC
Q 011893 180 RAVPKELSPG 189 (475)
Q Consensus 180 ~a~~k~~~~~ 189 (475)
+++++..+..
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2cq3_A 89 NATARVMTNS 98 (103)
T ss_dssp ECCSSCCCCC
T ss_pred EcccCCCCCC
Confidence 9998876554
No 72
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.4e-18 Score=143.25 Aligned_cols=88 Identities=22% Similarity=0.384 Sum_probs=81.2
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCcee--------eEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-cee
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIIT--------DVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL 171 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~--------~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l 171 (475)
.....++|||+|||+++|+++|+++|++||.|+ +|.|+.++.+++++|||||+|+++++|++||+.++ +.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 79999999999999999999999999999999887 899
Q ss_pred CCeEEEEEEccCCCCCC
Q 011893 172 NGKMVEVKRAVPKELSP 188 (475)
Q Consensus 172 ~Gr~i~V~~a~~k~~~~ 188 (475)
++++|+|++++++....
T Consensus 91 ~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPMN 107 (113)
T ss_dssp TTEECEEECSSCCCCST
T ss_pred CCCEEEEEECCCCCCCC
Confidence 99999999998876543
No 73
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=7.4e-18 Score=141.31 Aligned_cols=87 Identities=23% Similarity=0.393 Sum_probs=80.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhh-cCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ce-eCCeEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQ-FGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HE-LNGKMVEV 178 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~-~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~-l~Gr~i~V 178 (475)
....++|||+|||+++|+++|+++|++ ||.|++|.|+.++ ++++++||||+|+++++|++||+.++ +. |++++|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 356789999999999999999999999 9999999999998 89999999999999999999999888 78 99999999
Q ss_pred EEccCCCCCCC
Q 011893 179 KRAVPKELSPG 189 (475)
Q Consensus 179 ~~a~~k~~~~~ 189 (475)
+++.++..+..
T Consensus 85 ~~a~~~~~~~~ 95 (104)
T 2dhg_A 85 SVAIPKASRVK 95 (104)
T ss_dssp CBCCCCCSCCC
T ss_pred EEccCCCcCCC
Confidence 99988765543
No 74
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-17 Score=137.84 Aligned_cols=86 Identities=20% Similarity=0.335 Sum_probs=77.9
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||+++++++|+++|++||.|++|.|++++.+ +++||||+|+++++|++||+.++ +.|.+++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 3456789999999999999999999999999999999998654 68999999999999999999887 89999999999
Q ss_pred EccCCCCCC
Q 011893 180 RAVPKELSP 188 (475)
Q Consensus 180 ~a~~k~~~~ 188 (475)
+++++..++
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqi_A 89 WATTPSSQK 97 (103)
T ss_dssp ECCCTTCCC
T ss_pred ECCCCcccc
Confidence 998876544
No 75
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=143.39 Aligned_cols=81 Identities=22% Similarity=0.392 Sum_probs=73.8
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCC--eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCc----ccCCe
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGE--VLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKH----MIDGR 73 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~--V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~----~i~gr 73 (475)
+....+|||+|||+++||++|+++|++||+ |.+|+|++|+.|+++||||||+|.++++|++|| +++. .|++|
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 456789999999999999999999999995 679999999999999999999999999999999 5553 58999
Q ss_pred EEEEeecCC
Q 011893 74 TVEAKKAVP 82 (475)
Q Consensus 74 ~v~V~~a~~ 82 (475)
+|.|++|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 76
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8e-18 Score=141.59 Aligned_cols=85 Identities=19% Similarity=0.362 Sum_probs=79.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|+++++|++||+.++ +.|+|++|.|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3456899999999999999999999999999999999999999999999999999999999999887 899999999999
Q ss_pred ccCCCC
Q 011893 181 AVPKEL 186 (475)
Q Consensus 181 a~~k~~ 186 (475)
++++..
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 988653
No 77
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.74 E-value=8.5e-18 Score=136.35 Aligned_cols=79 Identities=52% Similarity=1.015 Sum_probs=74.7
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeec
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a 80 (475)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++.+.|++++|+|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 457889999999999999999999999999999999999989999999999999999999999 7778899999999875
No 78
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=137.64 Aligned_cols=82 Identities=20% Similarity=0.456 Sum_probs=77.3
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||+++++++|+++|++||.|++|.|+.++.++++++||||+|+++++|++|++.++ +.|++++|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred Ecc
Q 011893 180 RAV 182 (475)
Q Consensus 180 ~a~ 182 (475)
+|+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 79
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=8.6e-18 Score=144.25 Aligned_cols=83 Identities=24% Similarity=0.450 Sum_probs=74.6
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011893 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
...+|||+|||+++|+++|+++|++||.|++|+|++|+ .++||||||+|+++++|++||+.++ ++|+|++|.|.+++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 34689999999999999999999999999999999986 4589999999999999999999888 89999999999998
Q ss_pred CCCCCC
Q 011893 183 PKELSP 188 (475)
Q Consensus 183 ~k~~~~ 188 (475)
++..+.
T Consensus 82 ~~~~~~ 87 (115)
T 4f25_A 82 SRKERE 87 (115)
T ss_dssp CCCC--
T ss_pred Cccccc
Confidence 876543
No 80
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=9.3e-18 Score=135.24 Aligned_cols=80 Identities=30% Similarity=0.516 Sum_probs=76.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
...++|||+|||+++++++|+++|++||.|++|.|++++.++++++||||+|+++++|++|++.++ +.|+|++|+|++|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999999998888 8999999999998
Q ss_pred c
Q 011893 182 V 182 (475)
Q Consensus 182 ~ 182 (475)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 81
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.7e-18 Score=141.50 Aligned_cols=85 Identities=41% Similarity=0.767 Sum_probs=79.6
Q ss_pred CCCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEe
Q 011893 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (475)
Q Consensus 1 ~e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~ 78 (475)
+..+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++.+.|.+++|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3567899999999999999999999999999999999999989999999999999999999999 78999999999999
Q ss_pred ecCCCcc
Q 011893 79 KAVPRDD 85 (475)
Q Consensus 79 ~a~~~~~ 85 (475)
++.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9977654
No 82
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=135.58 Aligned_cols=81 Identities=27% Similarity=0.507 Sum_probs=74.7
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|.++++|++|+ ++.+.+.+++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999999999889999999999999999999999 7899999999999998
Q ss_pred CCC
Q 011893 81 VPR 83 (475)
Q Consensus 81 ~~~ 83 (475)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 765
No 83
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=1.7e-17 Score=139.34 Aligned_cols=85 Identities=24% Similarity=0.388 Sum_probs=78.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCC---eEEEE
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNG---KMVEV 178 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~G---r~i~V 178 (475)
...++|||+|||+++++++|+++|++||.|++|.|+.++ ++++++||||+|+++++|++||+.++ +.|.+ ++|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457899999999999999999999999999999999998 68999999999999999999999888 78888 99999
Q ss_pred EEccCCCCCC
Q 011893 179 KRAVPKELSP 188 (475)
Q Consensus 179 ~~a~~k~~~~ 188 (475)
++++++..+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9998877654
No 84
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=140.15 Aligned_cols=84 Identities=23% Similarity=0.299 Sum_probs=75.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCC-----eE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNG-----KM 175 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~G-----r~ 175 (475)
....++|||.|||+++|++||+++|++||.|++|.|+.+ +||||+|+++++|++||+.++ ++|++ ++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 455789999999999999999999999999999999876 699999999999999999988 89999 99
Q ss_pred EEEEEccCCCCCCCCCC
Q 011893 176 VEVKRAVPKELSPGPSR 192 (475)
Q Consensus 176 i~V~~a~~k~~~~~~~r 192 (475)
|+|++|+++...+...+
T Consensus 85 i~V~~a~~~~~~~~rsr 101 (108)
T 1x4c_A 85 IRVKVDGPRSPSYGRSR 101 (108)
T ss_dssp EEEEESSCCSCCCCCSS
T ss_pred EEEEeCCCCCCCCCCCC
Confidence 99999999776554443
No 85
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=3.9e-18 Score=138.71 Aligned_cols=83 Identities=20% Similarity=0.518 Sum_probs=78.2
Q ss_pred CCCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEee
Q 011893 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKK 79 (475)
Q Consensus 1 ~e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~ 79 (475)
||.+.++|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|.++++|++|+ ++.+.+.+++|+|.+
T Consensus 2 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 2 MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIP 81 (89)
T ss_dssp HHHHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEE
T ss_pred CCCcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999999999999889999999999999999999999 889999999999999
Q ss_pred cCCC
Q 011893 80 AVPR 83 (475)
Q Consensus 80 a~~~ 83 (475)
+.+.
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 8753
No 86
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.7e-18 Score=142.01 Aligned_cols=86 Identities=27% Similarity=0.453 Sum_probs=80.2
Q ss_pred CCCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEe
Q 011893 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (475)
Q Consensus 1 ~e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~ 78 (475)
|..+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++.+.|.+++|+|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3567899999999999999999999999999999999999889999999999999999999999 79999999999999
Q ss_pred ecCCCcch
Q 011893 79 KAVPRDDQ 86 (475)
Q Consensus 79 ~a~~~~~~ 86 (475)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99876543
No 87
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=142.90 Aligned_cols=86 Identities=28% Similarity=0.541 Sum_probs=79.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||+|||+++|+++|+++|++||.|++|.|+.++ ++++++||||+|+++++|++||+.++ ..|++++|+|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3556899999999999999999999999999999999998 89999999999999999999999988 899999999999
Q ss_pred ccCCCCCC
Q 011893 181 AVPKELSP 188 (475)
Q Consensus 181 a~~k~~~~ 188 (475)
++++....
T Consensus 83 a~~~~~~~ 90 (116)
T 2fy1_A 83 AKKPSFQS 90 (116)
T ss_dssp CCCSSCSS
T ss_pred CCCCCCCC
Confidence 98776543
No 88
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=138.81 Aligned_cols=85 Identities=19% Similarity=0.319 Sum_probs=79.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCcee-eEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeE----
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIIT-DVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKM---- 175 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~-~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~---- 175 (475)
....++|||+|||++++++||+++|++||.|+ +|.|++++.++++++||||+|+++++|++|++.++ +.|+++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 35678999999999999999999999999999 99999999999999999999999999999999888 8999999
Q ss_pred EEEEEccCCCC
Q 011893 176 VEVKRAVPKEL 186 (475)
Q Consensus 176 i~V~~a~~k~~ 186 (475)
|+|.+|++...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999977543
No 89
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=8.9e-18 Score=143.64 Aligned_cols=84 Identities=24% Similarity=0.451 Sum_probs=78.6
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++.+.|.+++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35689999999999999999999999999999999999989999999999999999999999 7899999999999999
Q ss_pred CCCcch
Q 011893 81 VPRDDQ 86 (475)
Q Consensus 81 ~~~~~~ 86 (475)
.++...
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 876543
No 90
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=7.1e-18 Score=146.46 Aligned_cols=88 Identities=18% Similarity=0.345 Sum_probs=81.5
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||.|||+++|+++|+++|++||.|++|.|+.++.++++++||||+|+++++|++||+.++ +.|++++|.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 33557899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred EccCCCCCC
Q 011893 180 RAVPKELSP 188 (475)
Q Consensus 180 ~a~~k~~~~ 188 (475)
++.++..+.
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 998876554
No 91
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=1.2e-17 Score=134.61 Aligned_cols=81 Identities=27% Similarity=0.468 Sum_probs=76.8
Q ss_pred CCCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEe
Q 011893 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (475)
Q Consensus 1 ~e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~ 78 (475)
++.+.++|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|.++++|++|+ ++.+.+.+++|+|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999999999999999999999889999999999999999999999 79999999999999
Q ss_pred ecC
Q 011893 79 KAV 81 (475)
Q Consensus 79 ~a~ 81 (475)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 92
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=137.13 Aligned_cols=83 Identities=34% Similarity=0.677 Sum_probs=78.5
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++|| ++.+.|.+++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46799999999999999999999999999999999999989999999999999999999999 7999999999999999
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 93
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=6.7e-18 Score=141.97 Aligned_cols=85 Identities=46% Similarity=0.954 Sum_probs=79.3
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeec
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a 80 (475)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++|| .+.+.|.+++|+|+++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 356799999999999999999999999999999999999989999999999999999999999 7888999999999999
Q ss_pred CCCcch
Q 011893 81 VPRDDQ 86 (475)
Q Consensus 81 ~~~~~~ 86 (475)
.++...
T Consensus 93 ~~~~~~ 98 (105)
T 2dh8_A 93 TPRGMQ 98 (105)
T ss_dssp CCSSCC
T ss_pred cCCCCC
Confidence 876544
No 94
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.7e-17 Score=139.30 Aligned_cols=84 Identities=15% Similarity=0.325 Sum_probs=75.6
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||.|||+++|++||+++|++||.|++|.|+.+ .++++||||+|+++++|++||+.++ ++|++++|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999765 4579999999999999999998888 89999999999
Q ss_pred EccCCCCC
Q 011893 180 RAVPKELS 187 (475)
Q Consensus 180 ~a~~k~~~ 187 (475)
+++++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4a_A 95 FPRSGRGT 102 (109)
T ss_dssp CCCCCCCC
T ss_pred EcccCCCC
Confidence 99886643
No 95
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=138.75 Aligned_cols=85 Identities=14% Similarity=0.270 Sum_probs=78.8
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||++++++||+++|++||.|+++.++.++.++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999988 89999999999
Q ss_pred EccCCC
Q 011893 180 RAVPKE 185 (475)
Q Consensus 180 ~a~~k~ 185 (475)
+++.+.
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 997643
No 96
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=1.4e-17 Score=137.84 Aligned_cols=83 Identities=17% Similarity=0.405 Sum_probs=78.7
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccC
Q 011893 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVP 183 (475)
Q Consensus 105 ~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~ 183 (475)
.++|||+|||.++++++|+++|++||.|++|.|+.++.++++++||||+|++.++|++|++.++ +.|++++|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5789999999999999999999999999999999999999999999999999999999999888 899999999999988
Q ss_pred CCCC
Q 011893 184 KELS 187 (475)
Q Consensus 184 k~~~ 187 (475)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7643
No 97
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=138.03 Aligned_cols=81 Identities=21% Similarity=0.475 Sum_probs=76.7
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|++|.|++++ ++++++||||+|.++++|++|| ++.+.|.+++|+|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999999999998 8999999999999999999999 7899999999999999
Q ss_pred CCCc
Q 011893 81 VPRD 84 (475)
Q Consensus 81 ~~~~ 84 (475)
.++.
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8754
No 98
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=138.71 Aligned_cols=99 Identities=22% Similarity=0.388 Sum_probs=82.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCCC
Q 011893 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPR 83 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~~ 83 (475)
++|||+|||+++|+++|+++|++||+|++|.|+++ +++||||+|.++++|++|+ ++...+.+++|+|+++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999987 6799999999999999999 6889999999999999876
Q ss_pred cchhccccCCCCCCCCCCCCCcceeeecCCCC
Q 011893 84 DDQNIQNRNNSSIHGSPGPARTKKIFVGGLAS 115 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~ 115 (475)
......... ........+|||++|+.
T Consensus 76 ~~~~~~~~~------~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDRP------PARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCSC------CCSCCCCSCCCSCCCCC
T ss_pred CCcccCCCC------CccccCCCceecCCCCC
Confidence 543221111 11224467899999974
No 99
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.72 E-value=2.2e-17 Score=132.38 Aligned_cols=80 Identities=29% Similarity=0.547 Sum_probs=75.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCC
Q 011893 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~ 82 (475)
..+|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|.++++|++|+ ++.+.+.+++|+|+++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999999889999999999999999999999 789999999999999986
Q ss_pred Cc
Q 011893 83 RD 84 (475)
Q Consensus 83 ~~ 84 (475)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 100
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=140.06 Aligned_cols=83 Identities=27% Similarity=0.455 Sum_probs=78.2
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|.++++|++|| ++.+.|.+++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999 7889999999999999
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
.++..
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 101
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7e-18 Score=142.00 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=75.3
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~ 180 (475)
.+...++|||+|||+++||+||+++|++||. ++|+|++|+ ++++||||||+|+++++|++||++..++|++|.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 3456689999999999999999999999995 599999998 79999999999999999999997544899999999999
Q ss_pred ccCCCC
Q 011893 181 AVPKEL 186 (475)
Q Consensus 181 a~~k~~ 186 (475)
+.+++.
T Consensus 89 ~~~~~~ 94 (102)
T 1wez_A 89 NSTAGT 94 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 887653
No 102
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=140.52 Aligned_cols=84 Identities=26% Similarity=0.472 Sum_probs=78.3
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--Hc------CcccCCeE
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQ------KHMIDGRT 74 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~------~~~i~gr~ 74 (475)
.+.++|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|.+.++|++|| ++ .+.|.+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 45789999999999999999999999999999999999989999999999999999999999 67 88999999
Q ss_pred EEEeecCCCcch
Q 011893 75 VEAKKAVPRDDQ 86 (475)
Q Consensus 75 v~V~~a~~~~~~ 86 (475)
|.|.++.++...
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999876543
No 103
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=1e-17 Score=147.05 Aligned_cols=86 Identities=28% Similarity=0.531 Sum_probs=80.5
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.+.+.++|||.|||+++|++||+++|++||.|++|+|++++.+++++|||||+|+++++|++||+.++ ..|++++|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred EccCCCC
Q 011893 180 RAVPKEL 186 (475)
Q Consensus 180 ~a~~k~~ 186 (475)
++++++.
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9988653
No 104
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=140.53 Aligned_cols=85 Identities=32% Similarity=0.598 Sum_probs=80.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||.++++++|+++|++||.|++|.|++++.+++++|||||+|+++++|++|++.++ ..|+|++|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred EccCCC
Q 011893 180 RAVPKE 185 (475)
Q Consensus 180 ~a~~k~ 185 (475)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998875
No 105
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=9.8e-18 Score=143.27 Aligned_cols=102 Identities=16% Similarity=0.283 Sum_probs=90.6
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||+++++++|+++|++||+|++|.|+++. +++|||||+|.+.++|++|+ +++..+.++.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 356899999999999999999999999999999999764 45899999999999999999 7999999999999998
Q ss_pred CCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCc
Q 011893 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGI 131 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~ 131 (475)
.++... .+++...++++|+++|++||.
T Consensus 83 ~~~~~~------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 754332 356778899999999999985
No 106
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=134.69 Aligned_cols=83 Identities=14% Similarity=0.384 Sum_probs=76.9
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCc-cceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011893 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQR-PRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~-~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
..++|||+|||+++|++||+++|++||.|++|.|+.++.++. +++||||+|+++++|++|++.++ ..|+|++|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999999987766 89999999999999999999877 8999999999999
Q ss_pred cCCCC
Q 011893 182 VPKEL 186 (475)
Q Consensus 182 ~~k~~ 186 (475)
.++..
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77653
No 107
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=140.18 Aligned_cols=82 Identities=40% Similarity=0.801 Sum_probs=76.0
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
+.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++. .|.+++|+|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 456899999999999999999999999999999999999989999999999999999999999 454 89999999999
Q ss_pred cCCCc
Q 011893 80 AVPRD 84 (475)
Q Consensus 80 a~~~~ 84 (475)
+.++.
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97653
No 108
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=137.28 Aligned_cols=83 Identities=25% Similarity=0.398 Sum_probs=77.8
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHhhcCceee--------EEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ce
Q 011893 100 PGPARTKKIFVGGLASTVTESDFKKYFDQFGIITD--------VVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HE 170 (475)
Q Consensus 100 ~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~--------v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~ 170 (475)
..+...++|||+|||++++++||+++|++||.|++ |.|+.++.+++++|||||+|+++++|++|++.++ ..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567789999999999999999999999999999 9999999999999999999999999999999887 89
Q ss_pred eCCeEEEEEEcc
Q 011893 171 LNGKMVEVKRAV 182 (475)
Q Consensus 171 l~Gr~i~V~~a~ 182 (475)
|+|++|+|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999984
No 109
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=139.97 Aligned_cols=83 Identities=27% Similarity=0.412 Sum_probs=78.1
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|.++++|++|| ++.+.|.+++|+|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 45789999999999999999999999999999999999989999999999999999999999 7999999999999999
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 86543
No 110
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=139.72 Aligned_cols=83 Identities=25% Similarity=0.488 Sum_probs=78.0
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|| ++.+.|.+++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45789999999999999999999999999999999999989999999999999999999999 6889999999999999
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
.++..
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 87654
No 111
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.7e-17 Score=135.53 Aligned_cols=82 Identities=9% Similarity=0.101 Sum_probs=75.7
Q ss_pred CCcceeeecCCCCCCCHHHHH----HHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEE
Q 011893 103 ARTKKIFVGGLASTVTESDFK----KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVE 177 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~----~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~ 177 (475)
...++|||+|||+++++++|+ ++|++||.|++|.|+.|+.+ |+||||+|+++++|++||+.++ ++|+|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456899999999999999999 99999999999999999876 7899999999999999999888 899999999
Q ss_pred EEEccCCCCC
Q 011893 178 VKRAVPKELS 187 (475)
Q Consensus 178 V~~a~~k~~~ 187 (475)
|++|+++..+
T Consensus 84 V~~a~~~~~~ 93 (96)
T 2dgx_A 84 VSLATGASGP 93 (96)
T ss_dssp EEECCCSSCC
T ss_pred EEEcCCCCCC
Confidence 9999876543
No 112
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1e-16 Score=136.55 Aligned_cols=85 Identities=18% Similarity=0.238 Sum_probs=77.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||+|||++++++||+++|++||.|++|.|+.++. +++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 34578999999999999999999999999999999999974 8999999999999999999999888 899999999999
Q ss_pred ccCCCCC
Q 011893 181 AVPKELS 187 (475)
Q Consensus 181 a~~k~~~ 187 (475)
+++...+
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9765443
No 113
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=137.72 Aligned_cols=83 Identities=30% Similarity=0.546 Sum_probs=78.2
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEE-EEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEA-VIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v-~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
...++|||+|||+++++++|+++|++||+|++| +|++++.++++++||||+|+++++|++|| ++.+.|.+++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 567999999999999999999999999999999 99999889999999999999999999999 788999999999999
Q ss_pred cCCCcc
Q 011893 80 AVPRDD 85 (475)
Q Consensus 80 a~~~~~ 85 (475)
+.++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987654
No 114
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.5e-17 Score=133.30 Aligned_cols=82 Identities=17% Similarity=0.301 Sum_probs=76.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||+|||+++|++||+++|++| .|++|.|+++ .+++++|||||+|+++++|++||+ ++ +.|++++|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3567899999999999999999999999 9999999999 779999999999999999999999 77 899999999999
Q ss_pred ccCCCC
Q 011893 181 AVPKEL 186 (475)
Q Consensus 181 a~~k~~ 186 (475)
++++..
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 988754
No 115
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=2.4e-17 Score=141.49 Aligned_cols=82 Identities=20% Similarity=0.360 Sum_probs=76.8
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||++++++||+++|++||.|++|+|++++.++++++||||+|+++++|++||+.++ ++|++++|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999988 89999999999
Q ss_pred Ecc
Q 011893 180 RAV 182 (475)
Q Consensus 180 ~a~ 182 (475)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 116
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=141.33 Aligned_cols=82 Identities=16% Similarity=0.224 Sum_probs=76.2
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeec
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a 80 (475)
+.+.++|||+|||+++|+++|+++|++||+|++|.|++++. +++||||||+|.++++|++|| ++.+.|.++.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45679999999999999999999999999999999999986 999999999999999999999 8889999999999987
Q ss_pred CCCc
Q 011893 81 VPRD 84 (475)
Q Consensus 81 ~~~~ 84 (475)
....
T Consensus 87 ~~~~ 90 (103)
T 1s79_A 87 DDYF 90 (103)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 6543
No 117
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=3e-17 Score=133.44 Aligned_cols=81 Identities=21% Similarity=0.452 Sum_probs=76.0
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011893 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
..++|||+|||+++++++|+++|++||.|++|.|+.++.++++++||||+|+++++|++|+ .++ +.|++++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3578999999999999999999999999999999999999999999999999999999999 666 89999999999997
Q ss_pred CCC
Q 011893 183 PKE 185 (475)
Q Consensus 183 ~k~ 185 (475)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 743
No 118
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=138.85 Aligned_cols=86 Identities=19% Similarity=0.354 Sum_probs=77.8
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceee-EEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITD-VVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~-v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~ 179 (475)
.....++|||+|||+++|++||+++|++||.|++ |.|+.+ .+++++|||||+|+++++|++||++..+.|++|.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEE
Confidence 3456789999999999999999999999999988 888888 78999999999999999999999994489999999999
Q ss_pred EccCCCCC
Q 011893 180 RAVPKELS 187 (475)
Q Consensus 180 ~a~~k~~~ 187 (475)
++.+++..
T Consensus 90 ~~~~~~~~ 97 (104)
T 1wg5_A 90 KSSRAEVR 97 (104)
T ss_dssp EECTTTSC
T ss_pred ECCHHHHH
Confidence 99876654
No 119
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=2.4e-18 Score=153.19 Aligned_cols=124 Identities=12% Similarity=0.116 Sum_probs=73.9
Q ss_pred cEEEEEEcCHHHHHHHHHcCccc-CCeEEEEeecCCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHH
Q 011893 48 GFGFIVFADPAVAERVVMQKHMI-DGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYF 126 (475)
Q Consensus 48 G~aFVeF~s~e~A~~Al~~~~~i-~gr~v~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F 126 (475)
++||.+|..++.+..++.+...+ .+...--... ...........++|||+|||+++||+||+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g--------------~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F 67 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSG--------------DSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 67 (139)
T ss_dssp ---------------------------------------------------------CCCCEECCSCCTTCCHHHHHHHH
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCC--------------CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 57888888888777666222111 1111100000 00011123456799999999999999999999
Q ss_pred hhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEccCCCCC
Q 011893 127 DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELS 187 (475)
Q Consensus 127 ~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~~k~~~ 187 (475)
++|| |++|.|++|++ +++||||||+|+++++|++||++..++|++|.|+|.++.+++..
T Consensus 68 ~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 68 SPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGAS 126 (139)
T ss_dssp CSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC-
T ss_pred HhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCCC
Confidence 9999 77999999987 99999999999999999999944338999999999999876643
No 120
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.4e-18 Score=143.68 Aligned_cols=87 Identities=13% Similarity=0.218 Sum_probs=79.7
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCe-eEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEee
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEV-LEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V-~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~ 79 (475)
+.+.++|||+|||+++||++|+++|++||.| ++|+|++++ +++++|||||+|.++++|++|| ++.+.|.+++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 4567899999999999999999999999999 899999998 9999999999999999999999 888999999999999
Q ss_pred cCCCcchhcc
Q 011893 80 AVPRDDQNIQ 89 (475)
Q Consensus 80 a~~~~~~~~~ 89 (475)
+.++......
T Consensus 91 a~~~~~~~~~ 100 (114)
T 2cpy_A 91 VTLEDMREIE 100 (114)
T ss_dssp ECHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9877654433
No 121
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=135.25 Aligned_cols=82 Identities=26% Similarity=0.446 Sum_probs=76.2
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||+++++++|+++|++||.|++|.|+.++. +++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345678999999999999999999999999999999999986 8999999999999999999999877 89999999999
Q ss_pred EccC
Q 011893 180 RAVP 183 (475)
Q Consensus 180 ~a~~ 183 (475)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9853
No 122
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.5e-17 Score=134.68 Aligned_cols=80 Identities=26% Similarity=0.410 Sum_probs=75.7
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|+++++|++|| ++.+.|.+++|+|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 45789999999999999999999999999999999999989999999999999999999999 7999999999999988
Q ss_pred CC
Q 011893 81 VP 82 (475)
Q Consensus 81 ~~ 82 (475)
.+
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 123
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.4e-17 Score=138.78 Aligned_cols=85 Identities=25% Similarity=0.459 Sum_probs=78.8
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEec-CCCCCcccEEEEEEcCHHHHHHHH--H-cCcccCCeEEEE
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKD-RATGRARGFGFIVFADPAVAERVV--M-QKHMIDGRTVEA 77 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~d-k~tG~srG~aFVeF~s~e~A~~Al--~-~~~~i~gr~v~V 77 (475)
+.+.++|||+|||+++++++|+++|++||+|++|.|+++ +.++++++||||+|.++++|++|| + +.+.|.+++|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 356789999999999999999999999999999999999 789999999999999999999999 6 899999999999
Q ss_pred eecCCCcch
Q 011893 78 KKAVPRDDQ 86 (475)
Q Consensus 78 ~~a~~~~~~ 86 (475)
+++.++...
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876543
No 124
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=3.3e-17 Score=134.09 Aligned_cols=84 Identities=18% Similarity=0.296 Sum_probs=77.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||+|||++++++||+++|++||.|++|.|+++ ++++++||||+|+++++|++|++.++ +.|++++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356789999999999999999999999999999999974 68899999999999999999999888 899999999999
Q ss_pred ccCCCCC
Q 011893 181 AVPKELS 187 (475)
Q Consensus 181 a~~k~~~ 187 (475)
++++...
T Consensus 83 a~~~~~~ 89 (92)
T 2dgv_A 83 DRNASGP 89 (92)
T ss_dssp CSCCSSC
T ss_pred cCCCCCC
Confidence 9887654
No 125
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.8e-17 Score=138.25 Aligned_cols=82 Identities=21% Similarity=0.397 Sum_probs=77.2
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|| ++.+.|.+++|.|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45689999999999999999999999999999999999989999999999999999999999 7899999999999998
Q ss_pred CCCc
Q 011893 81 VPRD 84 (475)
Q Consensus 81 ~~~~ 84 (475)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7653
No 126
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=137.10 Aligned_cols=83 Identities=25% Similarity=0.508 Sum_probs=76.9
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCC---CCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEE
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRA---TGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEA 77 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~---tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V 77 (475)
.+.++|||+|||++++|++|+++|++||+|++|.|++++. |+++++||||+|.++++|++|| ++.+.|.+++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5679999999999999999999999999999999999876 6689999999999999999999 6899999999999
Q ss_pred eecCCCcc
Q 011893 78 KKAVPRDD 85 (475)
Q Consensus 78 ~~a~~~~~ 85 (475)
+++.++..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99977554
No 127
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.71 E-value=1.2e-17 Score=137.64 Aligned_cols=81 Identities=14% Similarity=0.282 Sum_probs=74.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
...++|||+|||+++|++||+++|++||.|+++.|+.++.++++++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 456899999999999999999999999999999999999999999999999999999999999877 8999999999987
Q ss_pred cC
Q 011893 182 VP 183 (475)
Q Consensus 182 ~~ 183 (475)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 128
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=2.2e-17 Score=140.35 Aligned_cols=84 Identities=44% Similarity=0.849 Sum_probs=75.3
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeec
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a 80 (475)
+.+.++|||+|||++++|++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|| ..++.|.+++|+|+++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 456799999999999999999999999999999999999989999999999999999999999 4458999999999999
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
.++..
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87654
No 129
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=139.99 Aligned_cols=82 Identities=22% Similarity=0.300 Sum_probs=74.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC---ceeCCeEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF---HELNGKMVEV 178 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~---~~l~Gr~i~V 178 (475)
+...++|||+|||+++||+||+++|++||.|++|.|+++ ||||||+|+++++|++|++.++ .+|+|++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999999865 6899999999999999999764 6899999999
Q ss_pred EEccCCCCCCC
Q 011893 179 KRAVPKELSPG 189 (475)
Q Consensus 179 ~~a~~k~~~~~ 189 (475)
.++++++....
T Consensus 87 ~~A~~~~~~~~ 97 (105)
T 1sjq_A 87 QFSNHKELKTD 97 (105)
T ss_dssp CCCSSSSCCCT
T ss_pred EEcCCCCCCcc
Confidence 99998876654
No 130
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=1.9e-17 Score=139.23 Aligned_cols=84 Identities=27% Similarity=0.518 Sum_probs=77.9
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCccc---CCeEEE
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMI---DGRTVE 76 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i---~gr~v~ 76 (475)
+.+.++|||+|||++++|++|+++|++||+|++|.|++++.++++++||||+|.++++|++|| ++...+ .+++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 456899999999999999999999999999999999999989999999999999999999999 778777 889999
Q ss_pred EeecCCCcc
Q 011893 77 AKKAVPRDD 85 (475)
Q Consensus 77 V~~a~~~~~ 85 (475)
|+++.++..
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987654
No 131
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=7.8e-18 Score=137.89 Aligned_cols=80 Identities=21% Similarity=0.525 Sum_probs=70.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcC--CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011893 6 GKLFIGGISWDTNEDRLRDYFQAFG--EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G--~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
.+|||+|||++++|++|+++|++|| +|++|+|++++.+++++|||||+|.++++|++|| ++...|++++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999999999999999999999999999999 88999999999999987
Q ss_pred CCcc
Q 011893 82 PRDD 85 (475)
Q Consensus 82 ~~~~ 85 (475)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 132
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=4.9e-18 Score=142.15 Aligned_cols=83 Identities=18% Similarity=0.265 Sum_probs=78.3
Q ss_pred CCcceeeecCCCC------CCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCC-e
Q 011893 103 ARTKKIFVGGLAS------TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNG-K 174 (475)
Q Consensus 103 ~~~~~LfV~nLp~------~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~G-r 174 (475)
...++|||.|||+ ++++++|+++|++||.|++|.|++|+.|+++||||||+|+++++|++||+.++ +.|.+ +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 99999999999999999999999999999999999999999999999999888 89999 9
Q ss_pred EEEEEEccCCC
Q 011893 175 MVEVKRAVPKE 185 (475)
Q Consensus 175 ~i~V~~a~~k~ 185 (475)
+|+|.++.+++
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999998754
No 133
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.7e-17 Score=135.40 Aligned_cols=84 Identities=30% Similarity=0.476 Sum_probs=76.3
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||+++|++||+++|++| .+|.|+.++.++++++||||+|+++++|++||+.++ ++|++++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999977 478888998899999999999999999999999887 89999999999
Q ss_pred EccCCCCC
Q 011893 180 RAVPKELS 187 (475)
Q Consensus 180 ~a~~k~~~ 187 (475)
+++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99887654
No 134
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.4e-17 Score=137.20 Aligned_cols=86 Identities=22% Similarity=0.380 Sum_probs=79.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCc-eeeEEEe-ecCCCCccceEEEEEecCHHHHHHHHHhcC---ceeCCeEEE
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGI-ITDVVVM-YDHNTQRPRGFGFITYDSEEAVDKVLLKTF---HELNGKMVE 177 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~-I~~v~I~-~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~---~~l~Gr~i~ 177 (475)
...++|||+|||+++|+++|+++|++||. |++|.|+ .++.+++++|||||+|+++++|++|++.++ +.|++++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999998 888889999999999999999999999874 689999999
Q ss_pred EEEccCCCCCC
Q 011893 178 VKRAVPKELSP 188 (475)
Q Consensus 178 V~~a~~k~~~~ 188 (475)
|++++++....
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99999877644
No 135
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=135.16 Aligned_cols=79 Identities=24% Similarity=0.535 Sum_probs=75.1
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|.++++|++|| ++.+.|.+++|+|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 45789999999999999999999999999999999999988999999999999999999999 7899999999999987
Q ss_pred C
Q 011893 81 V 81 (475)
Q Consensus 81 ~ 81 (475)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 136
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=3.8e-17 Score=136.92 Aligned_cols=82 Identities=13% Similarity=0.368 Sum_probs=76.9
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecC
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~ 81 (475)
...++|||+|||++++|++|+++|++|+ |++|.|++++.+++++|||||+|+++++|++|| ++...|.+++|+|+++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEec
Confidence 4578999999999999999999999996 999999999989999999999999999999999 88999999999999998
Q ss_pred CCcc
Q 011893 82 PRDD 85 (475)
Q Consensus 82 ~~~~ 85 (475)
++..
T Consensus 92 ~~~~ 95 (103)
T 2dng_A 92 GRKQ 95 (103)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7554
No 137
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=146.25 Aligned_cols=86 Identities=21% Similarity=0.309 Sum_probs=79.2
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceee--EEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-c----eeCC
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITD--VVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-H----ELNG 173 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~--v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~----~l~G 173 (475)
.....++|||+|||+++||++|+++|++||.|+. |+|++|+.++++||||||+|+++ +|++||+.++ + +|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999966 99999999999999999999999 9999999998 7 9999
Q ss_pred eEEEEEEccCCCCC
Q 011893 174 KMVEVKRAVPKELS 187 (475)
Q Consensus 174 r~i~V~~a~~k~~~ 187 (475)
++|+|++++++...
T Consensus 98 r~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 98 KTINVEFAKGSKRD 111 (131)
T ss_dssp CCCCCEECCCSCCC
T ss_pred EEEEEEECCCCCCC
Confidence 99999999886543
No 138
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=4.6e-17 Score=134.67 Aligned_cols=83 Identities=24% Similarity=0.452 Sum_probs=78.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCC
Q 011893 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~ 82 (475)
.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++|+ +++..|.+++|+|+++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 589999999999999999999999999999999999989999999999999999999999 789999999999999988
Q ss_pred Ccchh
Q 011893 83 RDDQN 87 (475)
Q Consensus 83 ~~~~~ 87 (475)
+....
T Consensus 82 ~~~~~ 86 (96)
T 2x1f_A 82 SDISG 86 (96)
T ss_dssp SSGGG
T ss_pred CCCCC
Confidence 76543
No 139
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-17 Score=137.68 Aligned_cols=83 Identities=16% Similarity=0.434 Sum_probs=77.3
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCC-CCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRAT-GRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~t-G~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||++++|++|+++|++|| |++|.|++++.+ ++++|||||+|.++++|++|| ++.+.|.+++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4568999999999999999999999999 999999999887 999999999999999999999 8899999999999999
Q ss_pred CCCcch
Q 011893 81 VPRDDQ 86 (475)
Q Consensus 81 ~~~~~~ 86 (475)
.++...
T Consensus 92 ~~~~~~ 97 (104)
T 1wi8_A 92 DQAQDK 97 (104)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 876543
No 140
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.71 E-value=1.4e-16 Score=133.63 Aligned_cols=82 Identities=30% Similarity=0.485 Sum_probs=73.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
..+.++|||+|||+++|++||+++|++||.|++|.|+ ++||||+|+++++|++||+.++ ++|++++|+|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3567899999999999999999999999999999987 3499999999999999999887 899999999999
Q ss_pred ccCCCCCCCCC
Q 011893 181 AVPKELSPGPS 191 (475)
Q Consensus 181 a~~k~~~~~~~ 191 (475)
++++..+....
T Consensus 80 a~~~~~~~~~~ 90 (103)
T 2dgu_A 80 AKPPDQKRKER 90 (103)
T ss_dssp CCCCCCCCCCC
T ss_pred cCCCcccchhh
Confidence 99887665433
No 141
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.6e-17 Score=140.95 Aligned_cols=84 Identities=14% Similarity=0.234 Sum_probs=77.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCce-eeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGII-TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I-~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~ 180 (475)
+...++|||+|||+++|++||+++|++||.| +.|.|++|+ +++++|||||+|+++++|++||++..+.|++++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3556899999999999999999999999999 899999998 89999999999999999999999944899999999999
Q ss_pred ccCCCC
Q 011893 181 AVPKEL 186 (475)
Q Consensus 181 a~~k~~ 186 (475)
+.+++.
T Consensus 91 a~~~~~ 96 (114)
T 2cpy_A 91 VTLEDM 96 (114)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 987663
No 142
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=9.2e-17 Score=136.85 Aligned_cols=82 Identities=20% Similarity=0.384 Sum_probs=76.0
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||+++++++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|| ++.+.|.+++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 457899999999999999999999999999999999997 6999999999999999999999 7999999999999998
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 75443
No 143
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.70 E-value=4.8e-17 Score=136.57 Aligned_cols=83 Identities=20% Similarity=0.365 Sum_probs=76.9
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCC---eEEEE
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDG---RTVEA 77 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~g---r~v~V 77 (475)
.+.++|||+|||+++++++|+++|++||+|++|.|++++ ++++++||||+|.++++|++|| ++...+.+ ++|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 357899999999999999999999999999999999998 7999999999999999999999 78888888 99999
Q ss_pred eecCCCcch
Q 011893 78 KKAVPRDDQ 86 (475)
Q Consensus 78 ~~a~~~~~~ 86 (475)
+++.++..+
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999876543
No 144
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-17 Score=138.93 Aligned_cols=85 Identities=25% Similarity=0.544 Sum_probs=79.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
...++|||+|||+++++++|+++|++||.|++|.|+.++.++++++||||+|++.++|++|++.++ +.|++++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 356899999999999999999999999999999999999999999999999999999999999888 8999999999999
Q ss_pred cCCCCC
Q 011893 182 VPKELS 187 (475)
Q Consensus 182 ~~k~~~ 187 (475)
.++..+
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 887654
No 145
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.8e-17 Score=136.85 Aligned_cols=83 Identities=25% Similarity=0.591 Sum_probs=77.2
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
+.+.++|||+|||+++++++|+++|++||+|++|+|+++ ++++++||||+|.++++|++|| ++.+.|.+++|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 356889999999999999999999999999999999998 7899999999999999999999 799999999999999
Q ss_pred cCCCcch
Q 011893 80 AVPRDDQ 86 (475)
Q Consensus 80 a~~~~~~ 86 (475)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9876543
No 146
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.6e-17 Score=138.68 Aligned_cols=86 Identities=20% Similarity=0.352 Sum_probs=78.0
Q ss_pred CCCCcceeeecCCCCCCCHHHHH---HHHhhcCceeeEEEeecCCCC---ccceEEEEEecCHHHHHHHHHhcC-ceeCC
Q 011893 101 GPARTKKIFVGGLASTVTESDFK---KYFDQFGIITDVVVMYDHNTQ---RPRGFGFITYDSEEAVDKVLLKTF-HELNG 173 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~---~~F~~~G~I~~v~I~~d~~tg---~~kG~aFV~F~s~e~A~~Al~~~~-~~l~G 173 (475)
...+.++|||+|||++++++||+ ++|++||.|++|.|++++.++ +++|||||+|+++++|++||+.++ ++|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34567899999999999999999 999999999999999987643 566999999999999999999988 89999
Q ss_pred eEEEEEEccCCCC
Q 011893 174 KMVEVKRAVPKEL 186 (475)
Q Consensus 174 r~i~V~~a~~k~~ 186 (475)
++|+|++|+++..
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999988764
No 147
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-17 Score=140.03 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=73.8
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecC
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~ 81 (475)
.+.++|||+|||+++||+||+++|++||. ++|+|++++ ++++||||||+|+++++|++|| ++.+.|.+|.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 45789999999999999999999999995 499999998 8999999999999999999999 88899999999999876
Q ss_pred CCc
Q 011893 82 PRD 84 (475)
Q Consensus 82 ~~~ 84 (475)
+..
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 148
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=6.5e-17 Score=136.23 Aligned_cols=81 Identities=21% Similarity=0.409 Sum_probs=76.3
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||+++|+++|+++|++||.|++|.|+.++ ++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999887 89999999999
Q ss_pred Ecc
Q 011893 180 RAV 182 (475)
Q Consensus 180 ~a~ 182 (475)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 149
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.7e-17 Score=137.04 Aligned_cols=85 Identities=21% Similarity=0.346 Sum_probs=77.4
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCC-eeEEEEE-ecCCCCCcccEEEEEEcCHHHHHHHH--Hc--CcccCCeEE
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGE-VLEAVIM-KDRATGRARGFGFIVFADPAVAERVV--MQ--KHMIDGRTV 75 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~-V~~v~i~-~dk~tG~srG~aFVeF~s~e~A~~Al--~~--~~~i~gr~v 75 (475)
..+.++|||+|||+++++++|+++|++||+ |++|.|+ +++.+++++|||||+|.++++|++|| ++ ...+.+++|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 356789999999999999999999999998 9999998 78888999999999999999999999 54 488999999
Q ss_pred EEeecCCCcch
Q 011893 76 EAKKAVPRDDQ 86 (475)
Q Consensus 76 ~V~~a~~~~~~ 86 (475)
+|+++.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876553
No 150
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=5.4e-17 Score=133.63 Aligned_cols=79 Identities=24% Similarity=0.483 Sum_probs=74.4
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++. +++++||||+|.++++|++|| ++.+.|.+++|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 35678999999999999999999999999999999999984 899999999999999999999 799999999999998
Q ss_pred cC
Q 011893 80 AV 81 (475)
Q Consensus 80 a~ 81 (475)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 151
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=1.9e-17 Score=142.95 Aligned_cols=85 Identities=14% Similarity=0.239 Sum_probs=77.5
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCC---eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEe
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGE---VLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAK 78 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~---V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~ 78 (475)
.+.++|||+|||+++||+||+++|++||+ |++|+|++++. +++||||||+|+++++|++|| ++.+.|.+|.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 45789999999999999999999999999 89999999985 999999999999999999999 89999999999999
Q ss_pred ecCCCcchhc
Q 011893 79 KAVPRDDQNI 88 (475)
Q Consensus 79 ~a~~~~~~~~ 88 (475)
++..++....
T Consensus 94 ~a~~~~~~~~ 103 (118)
T 2db1_A 94 KSHRTEMDWV 103 (118)
T ss_dssp EECHHHHHHH
T ss_pred ECCHHHHHHH
Confidence 9876654433
No 152
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=1.1e-17 Score=140.00 Aligned_cols=83 Identities=17% Similarity=0.230 Sum_probs=77.7
Q ss_pred CcCcEEEEcCCCC------CCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCC-e
Q 011893 3 MELGKLFIGGISW------DTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDG-R 73 (475)
Q Consensus 3 ~d~~~LfVgnLP~------d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~g-r 73 (475)
...++|||+|||+ ++++++|+++|++||+|++|+|++++.|+++||||||+|.++++|++|| ++...|.+ +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3478999999999 9999999999999999999999999999999999999999999999999 89999999 9
Q ss_pred EEEEeecCCCcc
Q 011893 74 TVEAKKAVPRDD 85 (475)
Q Consensus 74 ~v~V~~a~~~~~ 85 (475)
+|+|.++.+++.
T Consensus 84 ~l~V~~a~~~~~ 95 (100)
T 3ns6_A 84 RLFLYTMKDVER 95 (100)
T ss_dssp BCEEEESHHHHH
T ss_pred EEEEEECchhhh
Confidence 999999976543
No 153
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3e-17 Score=138.25 Aligned_cols=82 Identities=22% Similarity=0.376 Sum_probs=75.0
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeE-EEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLE-AVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~-v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||++++|+||+++|++||+|++ |.|+++ .+++++|||||+|.++++|++|| ++.+.|.+|.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 45789999999999999999999999999998 888888 68999999999999999999999 8888999999999988
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
.+++.
T Consensus 92 ~~~~~ 96 (104)
T 1wg5_A 92 SRAEV 96 (104)
T ss_dssp CTTTS
T ss_pred CHHHH
Confidence 76543
No 154
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=4.8e-17 Score=138.15 Aligned_cols=82 Identities=29% Similarity=0.643 Sum_probs=77.7
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|| ++...|.+++|+|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 46789999999999999999999999999999999999989999999999999999999999 7999999999999999
Q ss_pred CCCc
Q 011893 81 VPRD 84 (475)
Q Consensus 81 ~~~~ 84 (475)
.++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8764
No 155
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.1e-17 Score=134.51 Aligned_cols=82 Identities=18% Similarity=0.318 Sum_probs=74.9
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++. .+++||||+|.++++|++|| ++.+.|.+++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 35678999999999999999999999999999999999864 36899999999999999999 799999999999999
Q ss_pred cCCCcc
Q 011893 80 AVPRDD 85 (475)
Q Consensus 80 a~~~~~ 85 (475)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987544
No 156
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.5e-17 Score=139.34 Aligned_cols=84 Identities=21% Similarity=0.387 Sum_probs=78.4
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCee--------EEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCC
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVL--------EAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDG 72 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~--------~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~g 72 (475)
.+.++|||+|||+++++++|+++|++||+|+ .|+|++++.++++++||||+|.++++|++|| ++.+.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4678999999999999999999999999999 6999999889999999999999999999999 79999999
Q ss_pred eEEEEeecCCCcch
Q 011893 73 RTVEAKKAVPRDDQ 86 (475)
Q Consensus 73 r~v~V~~a~~~~~~ 86 (475)
++|+|+++.++...
T Consensus 93 ~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 93 SKLKVSLARKKPPM 106 (113)
T ss_dssp EECEEECSSCCCCS
T ss_pred CEEEEEECCCCCCC
Confidence 99999999876543
No 157
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.2e-17 Score=140.34 Aligned_cols=83 Identities=43% Similarity=0.886 Sum_probs=77.7
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecCC
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~~ 82 (475)
+.++|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|| .+.+.|.+++|+|+++.+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 3589999999999999999999999999999999999989999999999999999999999 777899999999999987
Q ss_pred Ccch
Q 011893 83 RDDQ 86 (475)
Q Consensus 83 ~~~~ 86 (475)
+...
T Consensus 106 ~~~~ 109 (116)
T 1x4b_A 106 REES 109 (116)
T ss_dssp CCCC
T ss_pred CccC
Confidence 6543
No 158
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=132.29 Aligned_cols=82 Identities=22% Similarity=0.483 Sum_probs=76.1
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCC-cccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGR-ARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~-srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
.+.++|||+|||+++++++|+++|++||+|++|.|++++.++. +++||||+|.++++|++|+ +++..+.+++|+|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 5679999999999999999999999999999999999987665 8999999999999999999 799999999999999
Q ss_pred cCCCc
Q 011893 80 AVPRD 84 (475)
Q Consensus 80 a~~~~ 84 (475)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87643
No 159
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=4.2e-17 Score=147.86 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=76.6
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcC--ceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 104 RTKKIFVGGLASTVTESDFKKYFDQFG--IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G--~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
..++|||+|||+++|++||+++|++|| .|++|+|+.|+.++++||||||+|+++++|++||+.++ ++|+|++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999999999999999999999999999999999988 899999999999
Q ss_pred ccCC
Q 011893 181 AVPK 184 (475)
Q Consensus 181 a~~k 184 (475)
|.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 160
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.6e-17 Score=135.85 Aligned_cols=81 Identities=26% Similarity=0.423 Sum_probs=76.3
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCee-EEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeE----E
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVL-EAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRT----V 75 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~-~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~----v 75 (475)
...++|||+|||++++|++|+++|++||+|+ +|+|++++.++++++||||+|.++++|++|| ++.+.|.++. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4679999999999999999999999999999 9999999999999999999999999999999 7889999999 9
Q ss_pred EEeecCCC
Q 011893 76 EAKKAVPR 83 (475)
Q Consensus 76 ~V~~a~~~ 83 (475)
+|.++.+.
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99988754
No 161
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.70 E-value=5.2e-17 Score=143.42 Aligned_cols=84 Identities=24% Similarity=0.429 Sum_probs=78.5
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||++++|++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++...|.+++|+|+++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999989999999999999999999999 6899999999999999
Q ss_pred CCCcch
Q 011893 81 VPRDDQ 86 (475)
Q Consensus 81 ~~~~~~ 86 (475)
.++...
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876543
No 162
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-17 Score=142.59 Aligned_cols=84 Identities=17% Similarity=0.364 Sum_probs=78.2
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecC
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~ 81 (475)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++.+.|.++.|+|+++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 34689999999999999999999999999999999999989999999999999999999999 89999999999999987
Q ss_pred CCcch
Q 011893 82 PRDDQ 86 (475)
Q Consensus 82 ~~~~~ 86 (475)
++...
T Consensus 103 ~~~~~ 107 (114)
T 2cq4_A 103 AEKNR 107 (114)
T ss_dssp HHHHH
T ss_pred CCccC
Confidence 65543
No 163
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=6.5e-17 Score=139.08 Aligned_cols=83 Identities=37% Similarity=0.667 Sum_probs=77.3
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|++|.|++++ ++++++||||+|.+.++|++|| +++..|.+++|+|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999999998 8999999999999999999999 6889999999999999
Q ss_pred CCCcch
Q 011893 81 VPRDDQ 86 (475)
Q Consensus 81 ~~~~~~ 86 (475)
.++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876543
No 164
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=141.78 Aligned_cols=82 Identities=23% Similarity=0.379 Sum_probs=75.1
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecC
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~ 81 (475)
.+.++|||+|||+++||+||+++|++| .|++|+|++++. ++++|||||+|+++++|++|| ++.+.|.+|.|+|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 356799999999999999999999999 899999999974 999999999999999999999 88999999999999887
Q ss_pred CCcch
Q 011893 82 PRDDQ 86 (475)
Q Consensus 82 ~~~~~ 86 (475)
++...
T Consensus 92 ~~~~~ 96 (109)
T 2dnn_A 92 ERQWV 96 (109)
T ss_dssp HHHHH
T ss_pred ccchh
Confidence 65443
No 165
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=133.52 Aligned_cols=83 Identities=19% Similarity=0.382 Sum_probs=74.0
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||+++|++||+++|++||.| +|+.+ .++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34567999999999999999999999999977 56666 668999999999999999999999888 89999999999
Q ss_pred EccCCCCC
Q 011893 180 RAVPKELS 187 (475)
Q Consensus 180 ~a~~k~~~ 187 (475)
+++++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2fc9_A 87 LQGPRGSP 94 (101)
T ss_dssp ECSSCCCC
T ss_pred EcCCCCCC
Confidence 99887543
No 166
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.69 E-value=5.2e-17 Score=137.63 Aligned_cols=82 Identities=22% Similarity=0.369 Sum_probs=77.3
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|.++++|++|| ++...|.+++|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999989999999999999999999999 7999999999999998
Q ss_pred CCCc
Q 011893 81 VPRD 84 (475)
Q Consensus 81 ~~~~ 84 (475)
.++.
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 7654
No 167
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=134.60 Aligned_cols=82 Identities=20% Similarity=0.271 Sum_probs=73.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC---ceeCCeEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF---HELNGKMVEV 178 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~---~~l~Gr~i~V 178 (475)
..+.++|||+|||+++|++||+++|++||.|++|.|+++ |+||||+|+++++|++|++.++ .+|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 346789999999999999999999999999999998865 6899999999999999999753 6899999999
Q ss_pred EEccCCCCCCC
Q 011893 179 KRAVPKELSPG 189 (475)
Q Consensus 179 ~~a~~k~~~~~ 189 (475)
.++++++.+..
T Consensus 86 ~~a~~~~~~~~ 96 (101)
T 2cq1_A 86 QYSNHKELKTS 96 (101)
T ss_dssp EECSCSSCCCC
T ss_pred EEcCcccCcCC
Confidence 99998877653
No 168
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-17 Score=141.30 Aligned_cols=83 Identities=19% Similarity=0.411 Sum_probs=77.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
...++|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|+++++|++|| .++ +.|+++.|+|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45679999999999999999999999999999999999999999999999999999999999 666 8999999999999
Q ss_pred cCCCC
Q 011893 182 VPKEL 186 (475)
Q Consensus 182 ~~k~~ 186 (475)
+++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87654
No 169
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-17 Score=140.05 Aligned_cols=88 Identities=24% Similarity=0.316 Sum_probs=76.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||+|||+++|+++|+++|++||.|+.|.+..+..++++++||||+|+++++|++||+.++ +.|++++|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467899999999999999999999999999554444333478899999999999999999999988 899999999999
Q ss_pred ccCCCCCCC
Q 011893 181 AVPKELSPG 189 (475)
Q Consensus 181 a~~k~~~~~ 189 (475)
++++..+..
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpx_A 102 GKNKKQRSS 110 (115)
T ss_dssp CCCCSCCCC
T ss_pred ccCCCCCCC
Confidence 998776543
No 170
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-17 Score=139.14 Aligned_cols=87 Identities=25% Similarity=0.581 Sum_probs=80.5
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
+.+.++|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|.++++|++|| ++.+.|.+++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 456789999999999999999999999999999999999889999999999999999999999 788999999999999
Q ss_pred cCCCcchhc
Q 011893 80 AVPRDDQNI 88 (475)
Q Consensus 80 a~~~~~~~~ 88 (475)
+.++.....
T Consensus 85 a~~~~~~~~ 93 (104)
T 1p1t_A 85 AASEKNKEE 93 (104)
T ss_dssp TTCTTHHHH
T ss_pred CCCccchhh
Confidence 988765543
No 171
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=2e-17 Score=130.32 Aligned_cols=74 Identities=42% Similarity=0.820 Sum_probs=71.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeec
Q 011893 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 7 ~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a 80 (475)
+|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|+ ++.+.|.+++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 6999999999999999999999999999999999889999999999999999999999 8899999999999875
No 172
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.8e-17 Score=140.24 Aligned_cols=81 Identities=21% Similarity=0.328 Sum_probs=73.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEcc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~ 182 (475)
....+|||+|||+++|++||+++|++| .|++|.|++|+. ++++|||||+|+++++|++||++..++|++|.|+|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 446799999999999999999999999 899999999986 999999999999999999999654489999999999997
Q ss_pred CCC
Q 011893 183 PKE 185 (475)
Q Consensus 183 ~k~ 185 (475)
+++
T Consensus 92 ~~~ 94 (109)
T 2dnn_A 92 ERQ 94 (109)
T ss_dssp HHH
T ss_pred ccc
Confidence 654
No 173
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=1.7e-16 Score=137.63 Aligned_cols=87 Identities=20% Similarity=0.352 Sum_probs=80.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||+++++++|+++|++||.|++|.|+.++ +++++|||||+|+++++|++||+.++ +.|+|++|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999888 89999999999
Q ss_pred EccCCCCCC
Q 011893 180 RAVPKELSP 188 (475)
Q Consensus 180 ~a~~k~~~~ 188 (475)
+|.++...+
T Consensus 110 ~a~~~~~~~ 118 (124)
T 2kt5_A 110 LVASQIDLE 118 (124)
T ss_dssp EECCTTCCC
T ss_pred EeCCCCCCC
Confidence 998876554
No 174
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-17 Score=131.47 Aligned_cols=76 Identities=43% Similarity=0.773 Sum_probs=73.5
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEc
Q 011893 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181 (475)
Q Consensus 106 ~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a 181 (475)
++|||+|||+++++++|+++|++||.|++|.|++++.+++++|||||+|+++++|++|++.+++.|+|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999987
No 175
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=133.96 Aligned_cols=83 Identities=27% Similarity=0.558 Sum_probs=75.8
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++. .+++||||+|.++++|++|| ++.+.|.+++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35679999999999999999999999999999999999863 38999999999999999999 789999999999999
Q ss_pred cCCCcch
Q 011893 80 AVPRDDQ 86 (475)
Q Consensus 80 a~~~~~~ 86 (475)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876543
No 176
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=4e-17 Score=147.98 Aligned_cols=81 Identities=21% Similarity=0.544 Sum_probs=75.7
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcC--CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFG--EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G--~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
+.++|||+|||++++|++|+++|++|| +|++|+|++|+.++++||||||+|.++++|++|| ++...|.+++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 9999999999999999999999999999999999 689999999999999
Q ss_pred cCCCc
Q 011893 80 AVPRD 84 (475)
Q Consensus 80 a~~~~ 84 (475)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97654
No 177
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=5.9e-17 Score=135.79 Aligned_cols=83 Identities=23% Similarity=0.486 Sum_probs=76.7
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhh-cCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcc-cCCeEEEEe
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQA-FGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHM-IDGRTVEAK 78 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~-~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~-i~gr~v~V~ 78 (475)
...++|||+|||+++++++|+++|++ ||+|++|.|++++ ++++++||||+|.++++|++|| ++... |.+++|.|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45689999999999999999999999 9999999999998 9999999999999999999999 67778 999999999
Q ss_pred ecCCCcch
Q 011893 79 KAVPRDDQ 86 (475)
Q Consensus 79 ~a~~~~~~ 86 (475)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99766543
No 178
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=4.4e-17 Score=142.94 Aligned_cols=82 Identities=26% Similarity=0.421 Sum_probs=77.5
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|+++++|++|| ++...|.+++|+|+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999989999999999999999999999 7899999999999999
Q ss_pred CCCc
Q 011893 81 VPRD 84 (475)
Q Consensus 81 ~~~~ 84 (475)
.++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8754
No 179
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.69 E-value=1.1e-16 Score=138.62 Aligned_cols=82 Identities=18% Similarity=0.428 Sum_probs=76.4
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011893 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
..++|||+|||+++|++||+++|++||.|++|.|+.++.+++++|||||+|+++++|++|| .++ +.|+|++|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4579999999999999999999999999999999999999999999999999999999999 566 89999999999997
Q ss_pred CCCC
Q 011893 183 PKEL 186 (475)
Q Consensus 183 ~k~~ 186 (475)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 180
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=130.62 Aligned_cols=79 Identities=20% Similarity=0.497 Sum_probs=72.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||+|||+++|+++|+++|++||.|++|.|+ |+||||+|+++++|++|++.++ ++|++++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999997 5699999999999999999888 799999999999
Q ss_pred ccCCCCCC
Q 011893 181 AVPKELSP 188 (475)
Q Consensus 181 a~~k~~~~ 188 (475)
++++....
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 98876543
No 181
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.5e-17 Score=131.34 Aligned_cols=80 Identities=14% Similarity=0.368 Sum_probs=75.2
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecC
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~ 81 (475)
.+.++|||+|||+++++++|+++|++| +|++|.|+++ .+++++|||||+|.++++|++|| ++...|.+++|+|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 567899999999999999999999999 9999999999 68999999999999999999999 88899999999999987
Q ss_pred CCc
Q 011893 82 PRD 84 (475)
Q Consensus 82 ~~~ 84 (475)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 182
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=2.8e-17 Score=135.33 Aligned_cols=78 Identities=17% Similarity=0.288 Sum_probs=73.6
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
..++|||+|||++++++||+++|++||+|+++++++++.++++++||||+|.++++|++|| ++.+.|.+++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4689999999999999999999999999999999999889999999999999999999999 79999999999999875
No 183
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.3e-17 Score=135.85 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=75.4
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||+++++++|+++|++||+|+++++++++.++++++||||+|.++++|++|| ++.+.|.+++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34689999999999999999999999999999999999889999999999999999999999 7888999999999998
Q ss_pred CCC
Q 011893 81 VPR 83 (475)
Q Consensus 81 ~~~ 83 (475)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 653
No 184
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=1.1e-16 Score=144.25 Aligned_cols=83 Identities=20% Similarity=0.389 Sum_probs=77.9
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++.+.|.+++|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35789999999999999999999999999999999999989999999999999999999999 6899999999999999
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
.++..
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86543
No 185
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.6e-17 Score=136.82 Aligned_cols=79 Identities=15% Similarity=0.260 Sum_probs=70.8
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--Hc--CcccCCeEEEEe
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQ--KHMIDGRTVEAK 78 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~--~~~i~gr~v~V~ 78 (475)
.+.++|||+|||+++||+||+++|++||+|++|+|+++ ||||||+|+++++|++|| ++ ...|.+|+|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46789999999999999999999999999999999986 589999999999999999 33 368999999999
Q ss_pred ecCCCcchh
Q 011893 79 KAVPRDDQN 87 (475)
Q Consensus 79 ~a~~~~~~~ 87 (475)
++.++....
T Consensus 88 ~A~~~~~~~ 96 (105)
T 1sjq_A 88 FSNHKELKT 96 (105)
T ss_dssp CCSSSSCCC
T ss_pred EcCCCCCCc
Confidence 998765543
No 186
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.68 E-value=2.5e-17 Score=129.78 Aligned_cols=75 Identities=55% Similarity=0.956 Sum_probs=70.9
Q ss_pred eeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEc
Q 011893 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181 (475)
Q Consensus 107 ~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a 181 (475)
+|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|+++++|++|+++..+.|+|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999998999999999999999999999984448999999999875
No 187
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.68 E-value=4.3e-17 Score=140.64 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=76.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCc---eeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGI---ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~---I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V 178 (475)
....++|||+|||+++|++||+++|++||. |+.|+|++++. +++||||||+|+++++|++||++..++|++|.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 355689999999999999999999999999 89999999987 99999999999999999999994448999999999
Q ss_pred EEccCCC
Q 011893 179 KRAVPKE 185 (475)
Q Consensus 179 ~~a~~k~ 185 (475)
.++.+++
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997755
No 188
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.68 E-value=3.8e-17 Score=140.25 Aligned_cols=79 Identities=24% Similarity=0.430 Sum_probs=74.2
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++...|.+++|+|+++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 45689999999999999999999999999999999999889999999999999999999999 6889999999999886
Q ss_pred C
Q 011893 81 V 81 (475)
Q Consensus 81 ~ 81 (475)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 3
No 189
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.3e-17 Score=137.52 Aligned_cols=80 Identities=14% Similarity=0.271 Sum_probs=74.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEcc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~ 182 (475)
...++|||+|||+++|+++|+++|++||.|++|.|++|+. +++||||||+|+++++|++||+...+.|+|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 4568999999999999999999999999999999999988 999999999999999999999943489999999999876
Q ss_pred C
Q 011893 183 P 183 (475)
Q Consensus 183 ~ 183 (475)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 190
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=2.1e-17 Score=130.13 Aligned_cols=75 Identities=39% Similarity=0.717 Sum_probs=71.9
Q ss_pred eeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEc
Q 011893 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181 (475)
Q Consensus 107 ~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a 181 (475)
+|||+|||+++|+++|+++|++||.|++|.|++++.+++++|||||+|+++++|++|++.+++.|+|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999998668999999999875
No 191
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=132.89 Aligned_cols=79 Identities=22% Similarity=0.459 Sum_probs=74.9
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeE--------EEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCC
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLE--------AVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDG 72 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~--------v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~g 72 (475)
...++|||+|||+++++++|+++|++||+|++ |.|++++.+++++|||||+|.++++|++|| +++..+.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45789999999999999999999999999999 999999989999999999999999999999 79999999
Q ss_pred eEEEEeecC
Q 011893 73 RTVEAKKAV 81 (475)
Q Consensus 73 r~v~V~~a~ 81 (475)
++|+|++|.
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999873
No 192
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.3e-16 Score=128.44 Aligned_cols=80 Identities=18% Similarity=0.393 Sum_probs=72.5
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||+++|+++|+++|++||.|++|.|+++ ||||+|+++++|++|++.++ +.|++++|+|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 3456789999999999999999999999999999999743 99999999999999999888 89999999999
Q ss_pred EccCCCCCC
Q 011893 180 RAVPKELSP 188 (475)
Q Consensus 180 ~a~~k~~~~ 188 (475)
+++++....
T Consensus 78 ~a~~~~~~~ 86 (92)
T 2dgt_A 78 LSTSRLRTA 86 (92)
T ss_dssp ESSCCCSCC
T ss_pred EccCCCCCC
Confidence 998876543
No 193
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=4.1e-17 Score=144.61 Aligned_cols=84 Identities=19% Similarity=0.306 Sum_probs=77.2
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCc---eeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGI---ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMV 176 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~---I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i 176 (475)
.....++|||+|||+++||+||+++|++||. |++|+|++|+. +++||||||+|+++++|++||+ ++ ++|++|+|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 89999999988 9999999999999999999999 66 89999999
Q ss_pred EEEEccCCCC
Q 011893 177 EVKRAVPKEL 186 (475)
Q Consensus 177 ~V~~a~~k~~ 186 (475)
+|.++.+++.
T Consensus 118 ~V~~a~~~e~ 127 (136)
T 2hgl_A 118 EVFKSHRTEM 127 (136)
T ss_dssp EEEECCHHHH
T ss_pred EEEECChHHH
Confidence 9999977553
No 194
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=8.1e-17 Score=139.76 Aligned_cols=84 Identities=20% Similarity=0.384 Sum_probs=78.5
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++|+++|+++|++||+|++|.|++++.++++++||||+|.++++|++|| ++...|.+++|.|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 45789999999999999999999999999999999999889999999999999999999999 7999999999999999
Q ss_pred CCCcch
Q 011893 81 VPRDDQ 86 (475)
Q Consensus 81 ~~~~~~ 86 (475)
.++...
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 765543
No 195
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.7e-17 Score=143.29 Aligned_cols=85 Identities=15% Similarity=0.301 Sum_probs=76.4
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCe----eEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEE
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEV----LEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEA 77 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V----~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V 77 (475)
.+.++|||+|||+++||+||+++|++||+| ++|+|++++ ++++||||||+|+++++|++|| ++++.|.+|.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 457899999999999999999999999986 689999985 8999999999999999999999 8889999999999
Q ss_pred eecCCCcchhc
Q 011893 78 KKAVPRDDQNI 88 (475)
Q Consensus 78 ~~a~~~~~~~~ 88 (475)
..+.+++....
T Consensus 100 ~~a~~~e~~~~ 110 (123)
T 2dha_A 100 FRSTAAEVQQV 110 (123)
T ss_dssp EEECHHHHHHH
T ss_pred EECCHHHHHHH
Confidence 99876654443
No 196
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=2.7e-17 Score=137.47 Aligned_cols=83 Identities=23% Similarity=0.413 Sum_probs=74.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecC-CCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDH-NTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEV 178 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~-~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V 178 (475)
.....++|||+|||++++++||+++|++|| |++|.|++++ .+++++|||||+|+++++|++|| .++ +.|+|++|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345678999999999999999999999999 9999999998 68999999999999999999999 666 8999999999
Q ss_pred EEccCCC
Q 011893 179 KRAVPKE 185 (475)
Q Consensus 179 ~~a~~k~ 185 (475)
++++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998865
No 197
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=138.11 Aligned_cols=81 Identities=22% Similarity=0.310 Sum_probs=73.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC---ceeCCeEEEEE
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF---HELNGKMVEVK 179 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~---~~l~Gr~i~V~ 179 (475)
.+.++|||+|||+++||+||+++|++||.|++|.|+++ ||||||+|+++++|++|++.++ .+|.|++|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 45689999999999999999999999999999999875 6899999999999999999875 47999999999
Q ss_pred EccCCCCCCC
Q 011893 180 RAVPKELSPG 189 (475)
Q Consensus 180 ~a~~k~~~~~ 189 (475)
++++++.+..
T Consensus 103 ~a~~k~~~~~ 112 (119)
T 2ad9_A 103 FSNHKELKTD 112 (119)
T ss_dssp ECSSSSCCCC
T ss_pred EccCCCCCcc
Confidence 9998887653
No 198
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.68 E-value=1.3e-16 Score=130.47 Aligned_cols=81 Identities=27% Similarity=0.494 Sum_probs=75.1
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|++|+|+++ ++++++||||+|.++++|++|| ++.+.|.+++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56799999999999999999999999999999999984 7899999999999999999999 7899999999999998
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
.+...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 76543
No 199
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.68 E-value=1.9e-16 Score=133.40 Aligned_cols=78 Identities=23% Similarity=0.432 Sum_probs=74.0
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||++++|++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|| ++...|.+++|+|+++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 346899999999999999999999999999999999998 9999999999999999999999 7999999999999987
Q ss_pred C
Q 011893 81 V 81 (475)
Q Consensus 81 ~ 81 (475)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 200
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-17 Score=137.34 Aligned_cols=84 Identities=18% Similarity=0.358 Sum_probs=76.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
...++|||+|||+++|+++|+++|++||.|.. .++.++.+++++|||||+|+++++|++||+ ++ +.|.+++|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45689999999999999999999999999988 777787888999999999999999999999 66 8999999999999
Q ss_pred cCCCCCC
Q 011893 182 VPKELSP 188 (475)
Q Consensus 182 ~~k~~~~ 188 (475)
+++..++
T Consensus 93 ~~~~~~~ 99 (101)
T 1fj7_A 93 KGRDGTR 99 (101)
T ss_dssp SCCCCSS
T ss_pred CCCCCCC
Confidence 8876554
No 201
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=131.58 Aligned_cols=79 Identities=11% Similarity=0.132 Sum_probs=73.2
Q ss_pred CcCcEEEEcCCCCCCcHHHHH----HHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEE
Q 011893 3 MELGKLFIGGISWDTNEDRLR----DYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVE 76 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLk----e~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~ 76 (475)
.+.++|||+|||+++++++|+ ++|++||+|++|+|++++.+ |+||||+|.++++|++|| ++...|.+++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356899999999999999999 99999999999999998755 889999999999999999 899999999999
Q ss_pred EeecCCCc
Q 011893 77 AKKAVPRD 84 (475)
Q Consensus 77 V~~a~~~~ 84 (475)
|+++.++.
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997654
No 202
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2e-17 Score=134.94 Aligned_cols=82 Identities=33% Similarity=0.658 Sum_probs=72.9
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccCC
Q 011893 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPK 184 (475)
Q Consensus 106 ~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~k 184 (475)
++|||+|||+++++++|+++|++||.|++|.|++++.+++++|||||+|++++ |++|++.++ +.|+|++|+|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 999999988 8999999999999887
Q ss_pred CCCC
Q 011893 185 ELSP 188 (475)
Q Consensus 185 ~~~~ 188 (475)
....
T Consensus 81 ~~~~ 84 (90)
T 2ki2_A 81 KSLE 84 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 203
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=4.8e-17 Score=144.20 Aligned_cols=83 Identities=13% Similarity=0.236 Sum_probs=76.4
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCC---eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEe
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGE---VLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAK 78 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~---V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~ 78 (475)
.+.++|||+|||+++||+||+++|++||+ |++|+|++++. +++||||||+|+++++|++|| ++.+.|.+|+|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 45789999999999999999999999999 89999999986 999999999999999999999 88899999999999
Q ss_pred ecCCCcch
Q 011893 79 KAVPRDDQ 86 (475)
Q Consensus 79 ~a~~~~~~ 86 (475)
++.+++..
T Consensus 121 ~a~~~e~~ 128 (136)
T 2hgl_A 121 KSHRTEMD 128 (136)
T ss_dssp ECCHHHHH
T ss_pred ECChHHHH
Confidence 98765443
No 204
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-17 Score=133.61 Aligned_cols=79 Identities=22% Similarity=0.463 Sum_probs=73.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
...++|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|+++++|++|++.++ +.|+++.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 456899999999999999999999999999999999999999999999999999999999999888 8899998877654
No 205
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=7.8e-17 Score=139.48 Aligned_cols=81 Identities=20% Similarity=0.485 Sum_probs=76.5
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecCC
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~~ 82 (475)
+.++|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|.++++|++|| ++.+.|.+++|+|+++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 4689999999999999999999999999999999999889999999999999999999999 888999999999999875
Q ss_pred Cc
Q 011893 83 RD 84 (475)
Q Consensus 83 ~~ 84 (475)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 206
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.4e-17 Score=129.44 Aligned_cols=74 Identities=47% Similarity=0.931 Sum_probs=70.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
++|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|+ ++ +.+.+++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 58999999999999999999999999999999999989999999999999999999999 55 8999999999886
No 207
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.67 E-value=4.5e-17 Score=142.85 Aligned_cols=82 Identities=20% Similarity=0.329 Sum_probs=76.2
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeE--EEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCc----ccCCeE
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLE--AVIMKDRATGRARGFGFIVFADPAVAERVV--MQKH----MIDGRT 74 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~--v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~----~i~gr~ 74 (475)
...++|||+|||+++||++|+++|++||+|+. |+|++|+.++++||||||+|.++ +|++|| ++.. .|++|+
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45789999999999999999999999999977 99999999999999999999999 999999 8888 999999
Q ss_pred EEEeecCCCcc
Q 011893 75 VEAKKAVPRDD 85 (475)
Q Consensus 75 v~V~~a~~~~~ 85 (475)
|+|+++.++..
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999987543
No 208
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=3.1e-17 Score=129.09 Aligned_cols=74 Identities=36% Similarity=0.645 Sum_probs=70.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeec
Q 011893 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 7 ~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a 80 (475)
+|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|+++++|++|+ ++.+.+.+++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 6999999999999999999999999999999999989999999999999999999999 7788999999999875
No 209
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.5e-16 Score=133.13 Aligned_cols=81 Identities=16% Similarity=0.291 Sum_probs=72.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC---ceeCCeEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF---HELNGKMVEV 178 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~---~~l~Gr~i~V 178 (475)
..+.++|||+|||++++++||+++|++||.|++|.|+++ |+||||+|+++++|++|++.++ .+|+|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 355789999999999999999999999999999998854 6799999999999999999765 4699999999
Q ss_pred EEccCCCCCC
Q 011893 179 KRAVPKELSP 188 (475)
Q Consensus 179 ~~a~~k~~~~ 188 (475)
.++++++.++
T Consensus 86 ~~a~~~~~~~ 95 (104)
T 1wex_A 86 NYSTSKRITR 95 (104)
T ss_dssp EECSSSSCCC
T ss_pred EEccCccccC
Confidence 9998877553
No 210
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=3.3e-16 Score=137.90 Aligned_cols=81 Identities=30% Similarity=0.520 Sum_probs=76.0
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||+++|+++|+++|++||.|++|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999988 89999999998
Q ss_pred Ec
Q 011893 180 RA 181 (475)
Q Consensus 180 ~a 181 (475)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 211
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.3e-17 Score=131.57 Aligned_cols=79 Identities=20% Similarity=0.477 Sum_probs=73.4
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|+ ++.+.|.++.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46799999999999999999999999999999999999989999999999999999999999 7888899988877665
Q ss_pred C
Q 011893 81 V 81 (475)
Q Consensus 81 ~ 81 (475)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 212
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=134.35 Aligned_cols=82 Identities=17% Similarity=0.342 Sum_probs=75.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-cee--------C
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL--------N 172 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l--------~ 172 (475)
....++|||+|||+++|+++|+++|++||.|++|.|+.++ ++++++||||+|+++++|++||+.++ +.| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456899999999999999999999999999999999998 89999999999999999999999888 778 5
Q ss_pred CeEEEEEEccCC
Q 011893 173 GKMVEVKRAVPK 184 (475)
Q Consensus 173 Gr~i~V~~a~~k 184 (475)
+++|.|+++.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999865
No 213
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=134.06 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=70.2
Q ss_pred CCcceeeecCCCC-CCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC---ceeCCeEEEE
Q 011893 103 ARTKKIFVGGLAS-TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF---HELNGKMVEV 178 (475)
Q Consensus 103 ~~~~~LfV~nLp~-~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~---~~l~Gr~i~V 178 (475)
.+.++|||+|||+ ++|++||+++|++||.|++|.|+++ |+||||+|+++++|++||+.++ .+|+|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4678999999999 9999999999999999999999865 4699999999999999999876 4699999999
Q ss_pred EEccCCCC
Q 011893 179 KRAVPKEL 186 (475)
Q Consensus 179 ~~a~~k~~ 186 (475)
.+|+++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99986543
No 214
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.8e-16 Score=127.59 Aligned_cols=79 Identities=22% Similarity=0.436 Sum_probs=72.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||+|||+++|+++|+++|++||.|++|.|+++ ||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356789999999999999999999999999999999743 99999999999999999888 899999999999
Q ss_pred ccCCCCCC
Q 011893 181 AVPKELSP 188 (475)
Q Consensus 181 a~~k~~~~ 188 (475)
++++..++
T Consensus 78 a~~~~~~~ 85 (90)
T 2dnp_A 78 STKGQKKS 85 (90)
T ss_dssp SCCCCCCC
T ss_pred CCCCCCCC
Confidence 98876544
No 215
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=134.80 Aligned_cols=83 Identities=25% Similarity=0.578 Sum_probs=76.2
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||.++|+++|+++|++||.|++|.|++++. +++|||||+|+++++|++|++.++ +.|+|++|+|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999998863 589999999999999999999887 89999999999
Q ss_pred EccCCC
Q 011893 180 RAVPKE 185 (475)
Q Consensus 180 ~a~~k~ 185 (475)
+++++.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998864
No 216
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.3e-17 Score=142.25 Aligned_cols=83 Identities=14% Similarity=0.320 Sum_probs=76.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||+|||+++|++||+++|++||.|+++.++.++.+++++|||||+|+++++|++||+ ++ +.|++++|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999997777888889999999999999999999999 66 899999999999
Q ss_pred ccCCC
Q 011893 181 AVPKE 185 (475)
Q Consensus 181 a~~k~ 185 (475)
+.+++
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98754
No 217
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=3e-17 Score=143.63 Aligned_cols=82 Identities=21% Similarity=0.337 Sum_probs=75.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCcee--eEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIIT--DVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~--~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~ 179 (475)
....++|||+|||+++||+||+++|++| .|+ +|+|++|+. +++||||||+|+++++|++||++++++|++|.|+|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 3556889999999999999999999999 666 899999987 999999999999999999999987799999999999
Q ss_pred EccCCC
Q 011893 180 RAVPKE 185 (475)
Q Consensus 180 ~a~~k~ 185 (475)
++.+++
T Consensus 117 ~a~~~e 122 (126)
T 2hgm_A 117 KSSQEE 122 (126)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987654
No 218
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=129.97 Aligned_cols=79 Identities=24% Similarity=0.401 Sum_probs=72.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeC--CeEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN--GKMVEV 178 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~--Gr~i~V 178 (475)
..+.++|||.|||+++|++||+++|++||.|++|.|+.+ ++||||+|+++++|++|++.++ +.|+ +++|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 355689999999999999999999999999999999754 6799999999999999999888 8999 999999
Q ss_pred EEccCCCC
Q 011893 179 KRAVPKEL 186 (475)
Q Consensus 179 ~~a~~k~~ 186 (475)
++++++..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99988653
No 219
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.7e-16 Score=132.33 Aligned_cols=80 Identities=19% Similarity=0.463 Sum_probs=73.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
...++|||+|||+++++++|+++|++||.|++|.|+.+ ++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45689999999999999999999999999999999876 6799999999999999999888 8999999999999
Q ss_pred cCCCCCC
Q 011893 182 VPKELSP 188 (475)
Q Consensus 182 ~~k~~~~ 188 (475)
+++....
T Consensus 97 ~~~~~~~ 103 (109)
T 1x4g_A 97 KESPDMT 103 (109)
T ss_dssp CCCCSSC
T ss_pred CCCCCCC
Confidence 8876544
No 220
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.4e-16 Score=132.42 Aligned_cols=80 Identities=19% Similarity=0.323 Sum_probs=72.9
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||++++|++|+++|++||+|++|+|+++ +++++||||+|+++++|++|| ++.+.|.+++|+|+++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 46789999999999999999999999999999999664 458999999999999999999 7899999999999999
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
.++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 77543
No 221
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=1.9e-16 Score=135.48 Aligned_cols=79 Identities=22% Similarity=0.197 Sum_probs=70.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcC-ceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G-~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....+|||+|||+++||+||+++|++|| +|+.|.|+.+ +++|||||+|+++++|++||++++ .+|+|++|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4568999999999999999999999999 8999988643 478999999999999999999988 899999999999
Q ss_pred ccCCC
Q 011893 181 AVPKE 185 (475)
Q Consensus 181 a~~k~ 185 (475)
++.++
T Consensus 102 a~~~p 106 (111)
T 2jvr_A 102 DDNPP 106 (111)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 97543
No 222
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.66 E-value=3.8e-16 Score=135.37 Aligned_cols=82 Identities=22% Similarity=0.401 Sum_probs=76.5
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||+++++++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|| ++...|.+++|+|+++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 346899999999999999999999999999999999998 8999999999999999999999 7899999999999999
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
.+...
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 76543
No 223
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.66 E-value=3.4e-16 Score=131.21 Aligned_cols=78 Identities=18% Similarity=0.289 Sum_probs=70.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-c--eeCCeEEEEE
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-H--ELNGKMVEVK 179 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~--~l~Gr~i~V~ 179 (475)
.+.++|||+|||+++|++||+++|++||.|++|.|++ .|++|||+|+++++|++|++.++ . .|.||+|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 4678999999999999999999999999999999984 36799999999999999999887 3 5899999999
Q ss_pred EccCCCC
Q 011893 180 RAVPKEL 186 (475)
Q Consensus 180 ~a~~k~~ 186 (475)
++++++.
T Consensus 93 ~S~~k~l 99 (100)
T 3r27_A 93 YSTSQKI 99 (100)
T ss_dssp ECSCSCC
T ss_pred ecccccc
Confidence 9988763
No 224
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.8e-17 Score=141.24 Aligned_cols=83 Identities=23% Similarity=0.329 Sum_probs=74.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCce----eeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEE
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGII----TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I----~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V 178 (475)
....+|||+|||+++|++||+++|++||.| ++|.|++|+ ++++||||||+|+++++|++||++..+.|.+|.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 346799999999999999999999999975 689999984 799999999999999999999998558999999999
Q ss_pred EEccCCCC
Q 011893 179 KRAVPKEL 186 (475)
Q Consensus 179 ~~a~~k~~ 186 (475)
..+.+++.
T Consensus 100 ~~a~~~e~ 107 (123)
T 2dha_A 100 FRSTAAEV 107 (123)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99877543
No 225
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-17 Score=142.96 Aligned_cols=83 Identities=16% Similarity=0.346 Sum_probs=76.2
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecC
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~ 81 (475)
.+.++|||+|||+++||++|+++|++||+|+++.++.++.+++++|||||+|.++++|++|| ++.+.|.+++|+|.++.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 45689999999999999999999999999999777777779999999999999999999999 89999999999999987
Q ss_pred CCcc
Q 011893 82 PRDD 85 (475)
Q Consensus 82 ~~~~ 85 (475)
++..
T Consensus 103 ~~~~ 106 (124)
T 1wel_A 103 KKGM 106 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 226
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.1e-16 Score=127.55 Aligned_cols=78 Identities=22% Similarity=0.384 Sum_probs=70.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhc--CceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQF--GIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEV 178 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~--G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V 178 (475)
....++|||+|||+++|+++|+++|++| |.|++|.++ ++||||+|+++++|++||+.++ +.|++++|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3467899999999999999999999999 999999875 5699999999999999999888 8999999999
Q ss_pred EEccCCCCC
Q 011893 179 KRAVPKELS 187 (475)
Q Consensus 179 ~~a~~k~~~ 187 (475)
++++++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpd_A 84 TLAKPVDKD 92 (99)
T ss_dssp ECCCCCCCC
T ss_pred EECCCCCCC
Confidence 999887653
No 227
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.4e-16 Score=128.36 Aligned_cols=81 Identities=25% Similarity=0.455 Sum_probs=71.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
...++|||+|||+++|+++|+++|++||.|++| +.++.+++ ||||+|+++++|++||+ ++ +.|+|++|+|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456899999999999999999999999999987 56666555 99999999999999999 77 8999999999999
Q ss_pred cCCCCCCC
Q 011893 182 VPKELSPG 189 (475)
Q Consensus 182 ~~k~~~~~ 189 (475)
.+++....
T Consensus 80 ~~~~~~~~ 87 (94)
T 2e5g_A 80 EQKEFQSP 87 (94)
T ss_dssp CCSCCCCC
T ss_pred CcCCCCCC
Confidence 87765543
No 228
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=6.5e-17 Score=135.10 Aligned_cols=81 Identities=16% Similarity=0.420 Sum_probs=74.0
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecC-CCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDR-ATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk-~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||+++++++|+++|++|| |++|.|++++ .+++++|||||+|.+.++|++|| ++...|.+++|+|+++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVA 95 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEec
Confidence 4578999999999999999999999999 9999999998 68999999999999999999999 8889999999999998
Q ss_pred CCCc
Q 011893 81 VPRD 84 (475)
Q Consensus 81 ~~~~ 84 (475)
.++.
T Consensus 96 ~~~~ 99 (100)
T 2j76_E 96 DQAQ 99 (100)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 7653
No 229
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=8.4e-17 Score=134.47 Aligned_cols=82 Identities=27% Similarity=0.614 Sum_probs=76.2
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHcCcccCCeEEEEeecCC
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al~~~~~i~gr~v~V~~a~~ 82 (475)
.+.++|||+|||+++++++|+++|++||+|++|.|++++ +++++|||||+|.++++|++||.+.+.+++++|.|.++.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCc
Confidence 457899999999999999999999999999999999998 9999999999999999999999888899999999999876
Q ss_pred Ccc
Q 011893 83 RDD 85 (475)
Q Consensus 83 ~~~ 85 (475)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 544
No 230
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.65 E-value=2.8e-16 Score=141.58 Aligned_cols=82 Identities=30% Similarity=0.513 Sum_probs=77.2
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
..++|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|| ++.+.|.+++|+|.++.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4689999999999999999999999999999999999889999999999999999999999 68899999999999998
Q ss_pred CCcc
Q 011893 82 PRDD 85 (475)
Q Consensus 82 ~~~~ 85 (475)
++..
T Consensus 149 ~~~~ 152 (158)
T 2kn4_A 149 YGRP 152 (158)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7543
No 231
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.65 E-value=9.9e-17 Score=141.73 Aligned_cols=83 Identities=30% Similarity=0.499 Sum_probs=77.7
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++...|.+++|+|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35689999999999999999999999999999999999889999999999999999999999 7899999999999999
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
.++..
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87544
No 232
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=5.9e-17 Score=141.71 Aligned_cols=79 Identities=22% Similarity=0.423 Sum_probs=72.4
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCee--EEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEee
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVL--EAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKK 79 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~--~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~ 79 (475)
.+.++|||+|||+++||++|+++|++| .|+ +|+|++++. +++||||||+|+++++|++|| ++++.|.+|.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 357899999999999999999999999 777 899999986 999999999999999999999 777899999999988
Q ss_pred cCCC
Q 011893 80 AVPR 83 (475)
Q Consensus 80 a~~~ 83 (475)
+.++
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 233
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=4.1e-17 Score=138.08 Aligned_cols=84 Identities=14% Similarity=0.246 Sum_probs=76.8
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCC---eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEe
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGE---VLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAK 78 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~---V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~ 78 (475)
.+.++|||+|||+++|+++|+++|++||. |++|+|++++. ++++|||||+|.++++|++|| ++.+.|.+|.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 46789999999999999999999999988 89999999986 999999999999999999999 88899999999999
Q ss_pred ecCCCcchh
Q 011893 79 KAVPRDDQN 87 (475)
Q Consensus 79 ~a~~~~~~~ 87 (475)
++.+++...
T Consensus 88 ~a~~~~~~~ 96 (107)
T 2lmi_A 88 EINNEDVDA 96 (107)
T ss_dssp ECCHHHHHH
T ss_pred ECCHHHHHH
Confidence 987765433
No 234
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=1.6e-16 Score=136.42 Aligned_cols=80 Identities=21% Similarity=0.290 Sum_probs=67.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeE-----E
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKM-----V 176 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~-----i 176 (475)
...++|||.|||+++|++||+++|++||.|++|.|+.+ +||||+|+++++|++||+.++ ++|+|++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999866 799999999999999999888 8999998 8
Q ss_pred EEEEccCCCCCCC
Q 011893 177 EVKRAVPKELSPG 189 (475)
Q Consensus 177 ~V~~a~~k~~~~~ 189 (475)
+|+.+.++...+.
T Consensus 87 ~v~~~~~~~~~~~ 99 (115)
T 3beg_B 87 RVKVDGPRSPSYG 99 (115)
T ss_dssp EEEECC----CCC
T ss_pred EeccCCCCCCCCC
Confidence 8888777655443
No 235
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.1e-16 Score=129.63 Aligned_cols=80 Identities=26% Similarity=0.507 Sum_probs=73.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
..+.++|||+|||+++|+++|+++|++||.|++|.|+++ |+||||+|+++++|++|++.++ +.|++++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999999854 6799999999999999999888 899999999999
Q ss_pred ccCCCCC
Q 011893 181 AVPKELS 187 (475)
Q Consensus 181 a~~k~~~ 187 (475)
++++...
T Consensus 86 a~~~~~~ 92 (99)
T 2cpj_A 86 ACHSASL 92 (99)
T ss_dssp SSCCSCC
T ss_pred cCCCCCC
Confidence 9886654
No 236
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-16 Score=135.19 Aligned_cols=82 Identities=20% Similarity=0.404 Sum_probs=75.1
Q ss_pred CcCcEEEEcCCCCCCcHHHHH---HHHhhcCCeeEEEEEecCCCC---CcccEEEEEEcCHHHHHHHH--HcCcccCCeE
Q 011893 3 MELGKLFIGGISWDTNEDRLR---DYFQAFGEVLEAVIMKDRATG---RARGFGFIVFADPAVAERVV--MQKHMIDGRT 74 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLk---e~F~~~G~V~~v~i~~dk~tG---~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~ 74 (475)
.+.++|||+|||++++|++|+ ++|++||+|++|.|++++.++ +++|||||+|.++++|++|| ++.+.|++++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356899999999999999999 999999999999999987654 56699999999999999999 7999999999
Q ss_pred EEEeecCCCc
Q 011893 75 VEAKKAVPRD 84 (475)
Q Consensus 75 v~V~~a~~~~ 84 (475)
|+|+++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998765
No 237
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=9.6e-18 Score=143.77 Aligned_cols=85 Identities=25% Similarity=0.376 Sum_probs=79.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceee--------EEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCC
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITD--------VVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNG 173 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~--------v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~G 173 (475)
.+.++|||+|||+++++++|+++|++||.|++ |.|+.++.+++++|||||+|+++++|++||+.++ +.|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45689999999999999999999999999998 9999999999999999999999999999999888 89999
Q ss_pred eEEEEEEccCCCCC
Q 011893 174 KMVEVKRAVPKELS 187 (475)
Q Consensus 174 r~i~V~~a~~k~~~ 187 (475)
++|+|++++++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999887654
No 238
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=4.6e-17 Score=132.85 Aligned_cols=79 Identities=22% Similarity=0.631 Sum_probs=71.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCCC
Q 011893 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPR 83 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~~ 83 (475)
++|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.+++ |++|+ +++..+.+++|+|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 79999999999999999999999999999999999989999999999999999 99999 7889999999999999775
Q ss_pred cc
Q 011893 84 DD 85 (475)
Q Consensus 84 ~~ 85 (475)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 239
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.1e-16 Score=132.94 Aligned_cols=81 Identities=25% Similarity=0.507 Sum_probs=73.6
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCccc--------C
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMI--------D 71 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i--------~ 71 (475)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|| ++...| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3567899999999999999999999999999999999998 8999999999999999999999 788888 5
Q ss_pred CeEEEEeecCCC
Q 011893 72 GRTVEAKKAVPR 83 (475)
Q Consensus 72 gr~v~V~~a~~~ 83 (475)
+++|.|+++.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 677888887653
No 240
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.65 E-value=1.6e-16 Score=152.93 Aligned_cols=79 Identities=22% Similarity=0.520 Sum_probs=74.2
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcC--CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFG--EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G--~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
+.++|||+|||+++||++|+++|++|| +|++|+|++++.++++||||||+|.++++|++|| ++.+.|.+++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 9999999999999999999999999999999999 788999999999998
Q ss_pred cCC
Q 011893 80 AVP 82 (475)
Q Consensus 80 a~~ 82 (475)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 241
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.4e-16 Score=130.46 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=70.9
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCC-----eEE
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDG-----RTV 75 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~g-----r~v 75 (475)
...++|||+|||++++|++|+++|++||+|++|+|+++ +||||+|+++++|++|| ++.+.|.+ ++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999886 79999999999999999 78889999 999
Q ss_pred EEeecCCCcch
Q 011893 76 EAKKAVPRDDQ 86 (475)
Q Consensus 76 ~V~~a~~~~~~ 86 (475)
+|+++.++...
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999876543
No 242
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=3.5e-16 Score=130.47 Aligned_cols=77 Identities=18% Similarity=0.409 Sum_probs=71.7
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccCC
Q 011893 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPK 184 (475)
Q Consensus 106 ~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~k 184 (475)
++|||+|||+++|+++|+++|++||.|++|.|+.+ +++||||+|+++++|++|++.++ +.|++++|+|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999877 68899999999999999999887 8999999999999887
Q ss_pred CCC
Q 011893 185 ELS 187 (475)
Q Consensus 185 ~~~ 187 (475)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 243
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=1.6e-16 Score=132.83 Aligned_cols=83 Identities=23% Similarity=0.570 Sum_probs=76.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEcc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~ 182 (475)
...++|||+|||+++++++|+++|++||.|++|.|+.++ +++++|||||+|+++++|++||+ ..+.|+|++|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 456899999999999999999999999999999999998 89999999999999999999999 5589999999999998
Q ss_pred CCCCC
Q 011893 183 PKELS 187 (475)
Q Consensus 183 ~k~~~ 187 (475)
++...
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 77654
No 244
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=5.1e-16 Score=128.11 Aligned_cols=81 Identities=21% Similarity=0.331 Sum_probs=72.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||+|||+++++++|+++|++||.|..+ ..+++++|||||+|+++++|++||+.++ +.|+|++|+|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567899999999999999999999999988766 3457899999999999999999999888 899999999999
Q ss_pred ccCCCCC
Q 011893 181 AVPKELS 187 (475)
Q Consensus 181 a~~k~~~ 187 (475)
+.++...
T Consensus 88 a~~~~~~ 94 (96)
T 1fjc_A 88 TGEKGGT 94 (96)
T ss_dssp CSSSCCC
T ss_pred cCCCCCC
Confidence 9887654
No 245
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.2e-16 Score=129.19 Aligned_cols=80 Identities=19% Similarity=0.324 Sum_probs=71.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||+|||+++|+++|+++|++||.|+ +.|+.+ ++++||||+|+++++|++||+.++ +.|+|++|+|++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999997 666654 568899999999999999999888 899999999999
Q ss_pred ccCCCC
Q 011893 181 AVPKEL 186 (475)
Q Consensus 181 a~~k~~ 186 (475)
++++..
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 988754
No 246
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=7.7e-16 Score=130.58 Aligned_cols=76 Identities=22% Similarity=0.508 Sum_probs=69.4
Q ss_pred CCcceeeecCCCCC-CCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 103 ARTKKIFVGGLAST-VTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 103 ~~~~~LfV~nLp~~-~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
...++|||+|||++ +|++||+++|++||.|++|.| +++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999998 47899999999999999998888 899999999999
Q ss_pred ccCCCC
Q 011893 181 AVPKEL 186 (475)
Q Consensus 181 a~~k~~ 186 (475)
++++..
T Consensus 97 a~~~~~ 102 (110)
T 1wf1_A 97 AGEPKP 102 (110)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 986443
No 247
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.64 E-value=4.3e-16 Score=137.12 Aligned_cols=78 Identities=27% Similarity=0.474 Sum_probs=73.6
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++++.|.+++|+|++|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 46789999999999999999999999999999999999889999999999999999999999 7888999999999875
No 248
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6e-16 Score=130.12 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=69.5
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--H--cCcccCCeEEEEe
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--M--QKHMIDGRTVEAK 78 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~--~~~~i~gr~v~V~ 78 (475)
...++|||+|||++++|++|+++|++||+|++|.|+++ |+||||+|+++++|++|+ + +...+.+++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 45689999999999999999999999999999998875 689999999999999999 3 3567999999999
Q ss_pred ecCCCcch
Q 011893 79 KAVPRDDQ 86 (475)
Q Consensus 79 ~a~~~~~~ 86 (475)
++.++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2cq1_A 87 YSNHKELK 94 (101)
T ss_dssp ECSCSSCC
T ss_pred EcCcccCc
Confidence 99866543
No 249
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=6.9e-17 Score=136.69 Aligned_cols=83 Identities=23% Similarity=0.281 Sum_probs=76.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCc---eeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGI---ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~---I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V 178 (475)
....++|||+|||+++|++||+++|++||. |++|.|++|+. ++++|||||+|+++++|++||++..+.|+++.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 356789999999999999999999999998 89999999988 99999999999999999999994338999999999
Q ss_pred EEccCCC
Q 011893 179 KRAVPKE 185 (475)
Q Consensus 179 ~~a~~k~ 185 (475)
.++.+++
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9998765
No 250
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.64 E-value=5e-16 Score=130.93 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=74.3
Q ss_pred CCcceeeecCCCCCC------CHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCe-
Q 011893 103 ARTKKIFVGGLASTV------TESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGK- 174 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~------teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr- 174 (475)
...++|||+|||+.+ |+++|+++|++||.|++|.|+ +.+++++|||||+|+++++|++||+.++ +.|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346799999999999 789999999999999999998 4678999999999999999999999988 899998
Q ss_pred EEEEEEccCCC
Q 011893 175 MVEVKRAVPKE 185 (475)
Q Consensus 175 ~i~V~~a~~k~ 185 (475)
+|+|.++.+.+
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999997654
No 251
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.1e-16 Score=126.99 Aligned_cols=80 Identities=25% Similarity=0.521 Sum_probs=69.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCc-eeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC--ceeCCeEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGI-ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF--HELNGKMVEV 178 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~-I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~--~~l~Gr~i~V 178 (475)
....++|||+|||+++|++||+++|++||. |..+.|. +++||||+|+++++|++||+.++ ++|++++|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 356789999999999999999999999999 5555552 47899999999999999999776 6999999999
Q ss_pred EEccCCCCCC
Q 011893 179 KRAVPKELSP 188 (475)
Q Consensus 179 ~~a~~k~~~~ 188 (475)
++++++..+.
T Consensus 78 ~~a~~~~~~~ 87 (93)
T 2cqh_A 78 DYSVSKKLRS 87 (93)
T ss_dssp EECCCCCCCC
T ss_pred EEccCccccC
Confidence 9998876543
No 252
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1e-15 Score=123.34 Aligned_cols=76 Identities=29% Similarity=0.490 Sum_probs=69.7
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhc-C-ceeCCeEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT-F-HELNGKMVEV 178 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~-~-~~l~Gr~i~V 178 (475)
.....++|||+|||+++++++|+++|++||.|++|.|+++ |+||||+|+++++|++|++.+ + +.|+|++|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3456789999999999999999999999999999999864 679999999999999999987 6 8999999999
Q ss_pred EEcc
Q 011893 179 KRAV 182 (475)
Q Consensus 179 ~~a~ 182 (475)
++|+
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9984
No 253
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.3e-16 Score=133.80 Aligned_cols=79 Identities=15% Similarity=0.260 Sum_probs=70.3
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--Hc--CcccCCeEEEEe
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQ--KHMIDGRTVEAK 78 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~--~~~i~gr~v~V~ 78 (475)
...++|||+|||++++|++|+++|++||+|++|.|+++ ||||||+|+++++|++|| ++ ...|.+++|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 34689999999999999999999999999999999986 589999999999999999 34 467999999999
Q ss_pred ecCCCcchh
Q 011893 79 KAVPRDDQN 87 (475)
Q Consensus 79 ~a~~~~~~~ 87 (475)
++.++....
T Consensus 103 ~a~~k~~~~ 111 (119)
T 2ad9_A 103 FSNHKELKT 111 (119)
T ss_dssp ECSSSSCCC
T ss_pred EccCCCCCc
Confidence 998765543
No 254
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.63 E-value=4.7e-16 Score=126.78 Aligned_cols=72 Identities=11% Similarity=0.207 Sum_probs=67.9
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011893 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 105 ~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
...|||+||++.+||++|+++|.+||+|++++|.. +||||||+|.++++|++|++.+| .+|.+|+|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46799999999999999999999999999999964 68999999999999999999999 89999999999984
No 255
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.8e-16 Score=131.99 Aligned_cols=80 Identities=28% Similarity=0.610 Sum_probs=74.1
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++ ++++|||||+|.++++|++|+ ++++.|.+++|+|++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999999985 358999999999999999999 789999999999999
Q ss_pred cCCC
Q 011893 80 AVPR 83 (475)
Q Consensus 80 a~~~ 83 (475)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8765
No 256
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.1e-16 Score=126.90 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=73.3
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeE-EEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDV-VVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEV 178 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v-~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V 178 (475)
.....++|||+|||+++|+++|+++|++||.|++| .|+.++.+++ |||+|+++++|++||+.++ +.|++++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34557899999999999999999999999999999 5888876443 9999999999999999888 8999999999
Q ss_pred EEccCCCC
Q 011893 179 KRAVPKEL 186 (475)
Q Consensus 179 ~~a~~k~~ 186 (475)
+++.+++.
T Consensus 87 ~~a~~~~~ 94 (96)
T 2e44_A 87 AYIPDEMA 94 (96)
T ss_dssp EECCCCCS
T ss_pred EEcCcccc
Confidence 99998853
No 257
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.63 E-value=8.5e-16 Score=139.99 Aligned_cols=84 Identities=21% Similarity=0.364 Sum_probs=76.8
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|+.|.|++++.+++++|||||+|.+.++|++|| ++...|.+++|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34678999999999999999999999999999999999989999999999999999999999 7899999999999999
Q ss_pred CCCcch
Q 011893 81 VPRDDQ 86 (475)
Q Consensus 81 ~~~~~~ 86 (475)
.++...
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 776543
No 258
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.63 E-value=6.9e-16 Score=131.01 Aligned_cols=79 Identities=22% Similarity=0.455 Sum_probs=71.2
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||+|||+++|++||+++|++||.|++|.|+ +|||||+|++.++|++|++.++ ..|+|++|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999997 6799999999999999999887 89999999999
Q ss_pred EccCCCCC
Q 011893 180 RAVPKELS 187 (475)
Q Consensus 180 ~a~~k~~~ 187 (475)
+++++..+
T Consensus 99 ~a~~~~~r 106 (108)
T 2jvo_A 99 YSKLPAKR 106 (108)
T ss_dssp SCSCCC--
T ss_pred EecCCCCC
Confidence 99887654
No 259
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=124.54 Aligned_cols=76 Identities=25% Similarity=0.576 Sum_probs=70.1
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|++|+|+ |+||||+|.++++|++|+ ++...|.+++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 567899999999999999999999999999999998 479999999999999999 7889999999999999
Q ss_pred CCCcch
Q 011893 81 VPRDDQ 86 (475)
Q Consensus 81 ~~~~~~ 86 (475)
.++...
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876543
No 260
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.3e-16 Score=129.02 Aligned_cols=81 Identities=35% Similarity=0.562 Sum_probs=74.1
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|+.| .+|.|++++.++++++||||+|.++++|++|| ++.+.|.+++|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 467899999999999999999999977 47889999889999999999999999999999 7999999999999999
Q ss_pred CCCcch
Q 011893 81 VPRDDQ 86 (475)
Q Consensus 81 ~~~~~~ 86 (475)
.++...
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 876543
No 261
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=8.1e-17 Score=143.26 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=73.6
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecC
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~ 81 (475)
.+.++|||+|||+++||+||+++|++|| |++|+|++++. +++||||||+|+++++|++|| ++.+.|.+|.|+|..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 3567999999999999999999999999 67999999985 999999999999999999999 88899999999999887
Q ss_pred CCcc
Q 011893 82 PRDD 85 (475)
Q Consensus 82 ~~~~ 85 (475)
++..
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 262
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=7.7e-17 Score=134.48 Aligned_cols=81 Identities=21% Similarity=0.317 Sum_probs=74.5
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecCC
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~~ 82 (475)
+.++|||+|||+++++++|+++|++||+|+. .+++++.+++++|||||+|.++++|++|| ++.+.|.+++|+|.++.+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCC
Confidence 5789999999999999999999999999988 67777778999999999999999999999 888999999999999987
Q ss_pred Ccc
Q 011893 83 RDD 85 (475)
Q Consensus 83 ~~~ 85 (475)
+..
T Consensus 95 ~~~ 97 (101)
T 1fj7_A 95 RDG 97 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 263
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.6e-16 Score=128.74 Aligned_cols=80 Identities=24% Similarity=0.461 Sum_probs=71.8
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
+.+.++|||+|||+++++++|+++|++||+| +|+++ .++++++||||+|.++++|++|| ++.+.|.+++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4568999999999999999999999999976 56666 57899999999999999999999 788999999999999
Q ss_pred cCCCcc
Q 011893 80 AVPRDD 85 (475)
Q Consensus 80 a~~~~~ 85 (475)
+.++..
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 987643
No 264
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=129.09 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=68.4
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--Hc--CcccCCeEEEEee
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQ--KHMIDGRTVEAKK 79 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~--~~~i~gr~v~V~~ 79 (475)
..++|||+|||++++|++|+++|++||+|++|.|+++ |+||||+|+++++|++|+ ++ ...|.+++|.|.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4689999999999999999999999999999999874 589999999999999999 33 3469999999999
Q ss_pred cCCCcch
Q 011893 80 AVPRDDQ 86 (475)
Q Consensus 80 a~~~~~~ 86 (475)
+..+...
T Consensus 88 a~~~~~~ 94 (104)
T 1wex_A 88 STSKRIT 94 (104)
T ss_dssp CSSSSCC
T ss_pred ccCcccc
Confidence 9876543
No 265
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=8.4e-16 Score=131.47 Aligned_cols=82 Identities=20% Similarity=0.365 Sum_probs=72.9
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCC---CCcccEEEEEEcCHHHHHHHHHcCcccCCeEEEEee
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRAT---GRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKK 79 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~t---G~srG~aFVeF~s~e~A~~Al~~~~~i~gr~v~V~~ 79 (475)
.+.++|||+|||++++|++|+++|++||+|+ +.++.++.+ +++||||||+|+++++|++||...+.++++.|.+..
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~ 84 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVS 84 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEEC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEecc
Confidence 5679999999999999999999999999999 888888767 799999999999999999999666778999999887
Q ss_pred cCCCcc
Q 011893 80 AVPRDD 85 (475)
Q Consensus 80 a~~~~~ 85 (475)
+.+...
T Consensus 85 ~~~~~~ 90 (114)
T 2dnl_A 85 SPTIKD 90 (114)
T ss_dssp CSSSCS
T ss_pred CCCcCC
Confidence 655443
No 266
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=5.7e-16 Score=129.15 Aligned_cols=76 Identities=22% Similarity=0.443 Sum_probs=70.2
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
...++|||+|||.++++++|+++|++||.|++|+|+ ++++||||+|++.++|++|++.++ +.|+|++|+|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 446899999999999999999999999999999997 357899999999999999999888 8999999999999
Q ss_pred cCC
Q 011893 182 VPK 184 (475)
Q Consensus 182 ~~k 184 (475)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 267
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=2e-15 Score=126.49 Aligned_cols=77 Identities=23% Similarity=0.428 Sum_probs=70.1
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||+++|+++|+++|++||+|++|+|++ +||||+|.++++|++|| ++.+.|.+++|+|+++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 3568999999999999999999999999999999874 49999999999999999 7999999999999999
Q ss_pred CCCcchh
Q 011893 81 VPRDDQN 87 (475)
Q Consensus 81 ~~~~~~~ 87 (475)
.++....
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 8766544
No 268
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=133.96 Aligned_cols=81 Identities=12% Similarity=0.234 Sum_probs=72.9
Q ss_pred CCcceeeecCCCCCCCHHHHH----HHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEE
Q 011893 103 ARTKKIFVGGLASTVTESDFK----KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVE 177 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~----~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~ 177 (475)
.+.++|||+|||+.+++++|+ ++|++||.|++|.|.+ ++++||||||+|++.++|++|++.++ ..|.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 456899999999999999876 6999999999998864 47889999999999999999999998 899999999
Q ss_pred EEEccCCCC
Q 011893 178 VKRAVPKEL 186 (475)
Q Consensus 178 V~~a~~k~~ 186 (475)
|.+|+++..
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999987654
No 269
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=5.8e-16 Score=130.48 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=67.8
Q ss_pred CcCcEEEEcCCCC-CCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--Hc--CcccCCeEEEE
Q 011893 3 MELGKLFIGGISW-DTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQ--KHMIDGRTVEA 77 (475)
Q Consensus 3 ~d~~~LfVgnLP~-d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~--~~~i~gr~v~V 77 (475)
...++|||+|||+ +++|+||+++|++||+|++|+|++++ +||||+|+++++|++|| ++ ...|.+|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 99999999999999999999998764 79999999999999999 44 34699999999
Q ss_pred eecCCCc
Q 011893 78 KKAVPRD 84 (475)
Q Consensus 78 ~~a~~~~ 84 (475)
.++..+.
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9997643
No 270
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.62 E-value=1.6e-15 Score=140.11 Aligned_cols=87 Identities=45% Similarity=0.785 Sum_probs=78.5
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~ 180 (475)
.+...++|||+|||+++|+++|+++|++||.|++|.|++++.+++++|||||+|.++++|++||+.+++.|+++.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 34567899999999999999999999999999999999999999999999999999999999999966999999999999
Q ss_pred ccCCCCC
Q 011893 181 AVPKELS 187 (475)
Q Consensus 181 a~~k~~~ 187 (475)
+.++...
T Consensus 89 ~~~~~~~ 95 (196)
T 1l3k_A 89 AVSREDS 95 (196)
T ss_dssp CCC----
T ss_pred ccCcccc
Confidence 9876543
No 271
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=6.9e-16 Score=126.44 Aligned_cols=80 Identities=24% Similarity=0.442 Sum_probs=64.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEc
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a 181 (475)
.....+|||+|||+++||++|+++|++||.|++|.|+++ +||||||+|+++++|+++. ...+.+++++|.|++|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEEEc
Confidence 356789999999999999999999999999999999874 6899999999999998543 2235678999999999
Q ss_pred cCCCCC
Q 011893 182 VPKELS 187 (475)
Q Consensus 182 ~~k~~~ 187 (475)
.++..+
T Consensus 82 ~~k~~~ 87 (89)
T 3d2w_A 82 EPKHNK 87 (89)
T ss_dssp C-----
T ss_pred CCCCcC
Confidence 987653
No 272
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.3e-15 Score=123.05 Aligned_cols=79 Identities=23% Similarity=0.412 Sum_probs=70.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||+|| ++|+++|+++|++||.|++|.|. ++++||||+|+++++|++||+.++ +.|++++|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 346689999996 89999999999999999999984 467899999999999999999988 899999999999
Q ss_pred ccCCCCCC
Q 011893 181 AVPKELSP 188 (475)
Q Consensus 181 a~~k~~~~ 188 (475)
++++....
T Consensus 84 a~~~~~~~ 91 (97)
T 1x5p_A 84 ARKQPMLD 91 (97)
T ss_dssp CSSCCCCC
T ss_pred CCCCCCCC
Confidence 98876543
No 273
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.62 E-value=1.2e-15 Score=124.34 Aligned_cols=71 Identities=11% Similarity=0.188 Sum_probs=66.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011893 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
+.-|||+||++++||++|+++|.+||+|++++|+. +||||||+|.++++|++|+ +|..++.+|+|+|+.|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 56799999999999999999999999999999976 5799999999999999999 89999999999999873
No 274
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.62 E-value=1.6e-15 Score=143.53 Aligned_cols=83 Identities=22% Similarity=0.347 Sum_probs=77.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
.+.++|||+|||+++||++|+++|++||.|++|+|++|+.+++++|||||+|+++++|++||+.++ +.+.++.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 456899999999999999999999999999999999999999999999999999999999999988 8999999999998
Q ss_pred cCCC
Q 011893 182 VPKE 185 (475)
Q Consensus 182 ~~k~ 185 (475)
.+..
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7644
No 275
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=126.61 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=67.0
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCc--ccCCeEEEEee
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKH--MIDGRTVEAKK 79 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~--~i~gr~v~V~~ 79 (475)
..++|||+|||+++||++|+++|++||+|++|+|+++ |+||||+|++.++|++|+ ++.. .|.+|+|.|.+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 4789999999999999999999999999999999864 589999999999999999 4444 48899999999
Q ss_pred cCCCc
Q 011893 80 AVPRD 84 (475)
Q Consensus 80 a~~~~ 84 (475)
++.++
T Consensus 94 S~~k~ 98 (100)
T 3r27_A 94 STSQK 98 (100)
T ss_dssp CSCSC
T ss_pred ccccc
Confidence 87654
No 276
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-15 Score=128.01 Aligned_cols=77 Identities=21% Similarity=0.473 Sum_probs=71.5
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||+++++++|+++|++||+|++|+|+++ ++||||+|.++++|++|| ++.+.|.+++|+|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45789999999999999999999999999999999986 589999999999999999 7999999999999999
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
.++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87654
No 277
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=9.9e-16 Score=125.47 Aligned_cols=78 Identities=31% Similarity=0.566 Sum_probs=65.3
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHcCcccCCeEEEEeecCC
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al~~~~~i~gr~v~V~~a~~ 82 (475)
...++|||+|||+++||++|+++|++||+|++|+|+++ +||||||+|+++++|+++....+.+.+++|.|.++.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCC
Confidence 45789999999999999999999999999999999884 7899999999999999655445567799999999987
Q ss_pred Ccc
Q 011893 83 RDD 85 (475)
Q Consensus 83 ~~~ 85 (475)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 643
No 278
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.1e-16 Score=126.26 Aligned_cols=80 Identities=25% Similarity=0.465 Sum_probs=69.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEcc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~ 182 (475)
...++|||+|||+++|+++|+++|++||.|++|.|+.+ +||||||+|+++++|++|+.. .+.+++++|+|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 34689999999999999999999999999999999865 688999999999999876543 367899999999998
Q ss_pred CCCCCC
Q 011893 183 PKELSP 188 (475)
Q Consensus 183 ~k~~~~ 188 (475)
++....
T Consensus 77 ~~~~~~ 82 (88)
T 1wf0_A 77 PKHNSN 82 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 279
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=9.6e-16 Score=131.23 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=71.0
Q ss_pred CCCcceeeecCCCCC-CCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC---ceeCCeEEE
Q 011893 102 PARTKKIFVGGLAST-VTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF---HELNGKMVE 177 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~-~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~---~~l~Gr~i~ 177 (475)
..+.++|||+|||++ +|++||+++|++||.|++|.|++ .|+||||+|+++++|++|++.++ .+|+||+|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345789999999998 99999999999999999999974 36899999999999999999764 469999999
Q ss_pred EEEccCCCCC
Q 011893 178 VKRAVPKELS 187 (475)
Q Consensus 178 V~~a~~k~~~ 187 (475)
|.+++++...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999876543
No 280
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=6.9e-16 Score=127.73 Aligned_cols=78 Identities=21% Similarity=0.405 Sum_probs=69.8
Q ss_pred CCCcceeeecCCCC-CCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 102 PARTKKIFVGGLAS-TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 102 ~~~~~~LfV~nLp~-~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
..+.++|||+|||+ ++|+++|+++|++||.|++|.|. ++||||+|+++++|++||+.++ +.|.+++|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35678999999998 99999999999999999999984 6799999999999999999887 89999999999
Q ss_pred EccCCCCC
Q 011893 180 RAVPKELS 187 (475)
Q Consensus 180 ~a~~k~~~ 187 (475)
+++++...
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99876543
No 281
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=125.64 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=69.7
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccC--CeEEEEe
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMID--GRTVEAK 78 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~--gr~v~V~ 78 (475)
...++|||+|||++++|++|+++|++||+|++|+|+++ ++||||+|.++++|++|+ ++.+.|. +++|.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 35689999999999999999999999999999999864 589999999999999999 7899999 9999999
Q ss_pred ecCCCc
Q 011893 79 KAVPRD 84 (475)
Q Consensus 79 ~a~~~~ 84 (475)
++.++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998754
No 282
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.61 E-value=1e-15 Score=126.36 Aligned_cols=82 Identities=18% Similarity=0.362 Sum_probs=74.3
Q ss_pred CCCcceeeecCCCCCCCHHHHH----HHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEE
Q 011893 102 PARTKKIFVGGLASTVTESDFK----KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMV 176 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~----~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i 176 (475)
..+.++|||+|||+++++++|+ ++|++||.|++|.|+. ++++++||||+|+++++|++|++.++ +.|+|++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3567899999999999999999 9999999999999874 46788999999999999999999887 89999999
Q ss_pred EEEEccCCCC
Q 011893 177 EVKRAVPKEL 186 (475)
Q Consensus 177 ~V~~a~~k~~ 186 (475)
.|.+++++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999988654
No 283
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=128.79 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=71.7
Q ss_pred cCcEEEEcCCCCCC------cHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCe-E
Q 011893 4 ELGKLFIGGISWDT------NEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGR-T 74 (475)
Q Consensus 4 d~~~LfVgnLP~d~------teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr-~ 74 (475)
..++|||+|||+++ ++++|+++|++||+|++|.|++ .+++++|||||+|.++++|++|| ++...|.++ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 36899999999999 8899999999999999999883 58899999999999999999999 689999998 9
Q ss_pred EEEeecCCC
Q 011893 75 VEAKKAVPR 83 (475)
Q Consensus 75 v~V~~a~~~ 83 (475)
|.|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998654
No 284
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=130.83 Aligned_cols=81 Identities=23% Similarity=0.468 Sum_probs=72.2
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCC---CccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEE
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNT---QRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~t---g~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~ 179 (475)
...++|||+|||+++|+++|+++|++||.|+ +.++.++.+ +++||||||+|+++++|++||+.+ +.|+|+.|.|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 4568999999999999999999999999999 888888877 699999999999999999999988 56899988887
Q ss_pred EccCCC
Q 011893 180 RAVPKE 185 (475)
Q Consensus 180 ~a~~k~ 185 (475)
.+.+..
T Consensus 84 ~~~~~~ 89 (114)
T 2dnl_A 84 SSPTIK 89 (114)
T ss_dssp CCSSSC
T ss_pred cCCCcC
Confidence 665443
No 285
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=3e-15 Score=124.45 Aligned_cols=77 Identities=22% Similarity=0.460 Sum_probs=69.9
Q ss_pred CCCCcceeeecCCCC-CCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEE
Q 011893 101 GPARTKKIFVGGLAS-TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEV 178 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~-~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V 178 (475)
.....++|||+|||+ ++++++|+++|++||.|++|.|. +|||||+|+++++|++|++.++ ..|+|++|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345678999999998 99999999999999999999983 6899999999999999999888 8999999999
Q ss_pred EEccCCC
Q 011893 179 KRAVPKE 185 (475)
Q Consensus 179 ~~a~~k~ 185 (475)
++++++.
T Consensus 90 ~~a~~~~ 96 (97)
T 2xnq_A 90 EVSSSNA 96 (97)
T ss_dssp EECCCCC
T ss_pred EecCCCC
Confidence 9997753
No 286
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=5.1e-17 Score=139.23 Aligned_cols=85 Identities=22% Similarity=0.452 Sum_probs=79.1
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeE--------EEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccC
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLE--------AVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMID 71 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~--------v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~ 71 (475)
+.+.++|||+|||+++++++|+++|++||+|++ |.|++++.++++++||||+|.++++|++|| ++...|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 467899999999999999999999999999999 899999889999999999999999999999 7899999
Q ss_pred CeEEEEeecCCCcch
Q 011893 72 GRTVEAKKAVPRDDQ 86 (475)
Q Consensus 72 gr~v~V~~a~~~~~~ 86 (475)
+++|+|+++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876544
No 287
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.1e-15 Score=122.64 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=69.8
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
+.+.++|||+|||+++++++|+++|++||+|++|.|+++ ||||+|.++++|++|| ++.+.|.+++|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 356789999999999999999999999999999999853 9999999999999999 799999999999999
Q ss_pred cCCCcc
Q 011893 80 AVPRDD 85 (475)
Q Consensus 80 a~~~~~ 85 (475)
+.++..
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 987644
No 288
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.60 E-value=8.4e-16 Score=123.11 Aligned_cols=71 Identities=18% Similarity=0.357 Sum_probs=65.3
Q ss_pred CcEEEEcCCCCCC------cHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCe-EE
Q 011893 5 LGKLFIGGISWDT------NEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGR-TV 75 (475)
Q Consensus 5 ~~~LfVgnLP~d~------teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr-~v 75 (475)
+++|||+|||+++ ++++|+++|++||+|++|.|++ .+++++|||||+|.++++|++|| ++...+.++ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 7899999999999999999883 58899999999999999999999 788999998 87
Q ss_pred EE
Q 011893 76 EA 77 (475)
Q Consensus 76 ~V 77 (475)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 289
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.6e-15 Score=126.39 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=68.6
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
..++|||+|||+++++++|+++|++||+|++|+|++ +++||||+|.+.++|++|+ ++...|.+++|+|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 468999999999999999999999999999999984 4689999999999999999 79999999999999987
Q ss_pred CC
Q 011893 82 PR 83 (475)
Q Consensus 82 ~~ 83 (475)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 290
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.60 E-value=1.4e-15 Score=130.10 Aligned_cols=76 Identities=9% Similarity=0.127 Sum_probs=68.8
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
..++|||+|||++++|++|+++|++|| +|+.|.|+.+ +++|||||+|+++++|++|| +++..|.+++|+|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 457999999999999999999999999 8999988643 47899999999999999999 7999999999999998
Q ss_pred CCC
Q 011893 81 VPR 83 (475)
Q Consensus 81 ~~~ 83 (475)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 654
No 291
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.8e-16 Score=125.50 Aligned_cols=78 Identities=31% Similarity=0.610 Sum_probs=70.1
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHcCcccCCeEEEEeecCC
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al~~~~~i~gr~v~V~~a~~ 82 (475)
.+.++|||+|||++++|++|+++|++||+|++|+|+++ +||||||+|.++++|++|+...+.+.+++|+|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 56799999999999999999999999999999999875 6899999999999999877556777999999999887
Q ss_pred Ccc
Q 011893 83 RDD 85 (475)
Q Consensus 83 ~~~ 85 (475)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 292
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.6e-15 Score=123.68 Aligned_cols=78 Identities=23% Similarity=0.487 Sum_probs=69.2
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecC
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~ 81 (475)
...++|||+|||++++|++|+++|++||+|++| +.++.+++ ||||+|.++++|++|| ++.+.|.+++|.|+++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 457899999999999999999999999999987 55655655 9999999999999999 88999999999999886
Q ss_pred CCcc
Q 011893 82 PRDD 85 (475)
Q Consensus 82 ~~~~ 85 (475)
++..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6543
No 293
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=2.6e-15 Score=138.75 Aligned_cols=85 Identities=20% Similarity=0.370 Sum_probs=78.6
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||.|||++++++||+++|++||.|++|.|+.++ +++++|||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999888 89999999999
Q ss_pred EccCCCC
Q 011893 180 RAVPKEL 186 (475)
Q Consensus 180 ~a~~k~~ 186 (475)
+|.+...
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9977543
No 294
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.7e-16 Score=133.30 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=71.7
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
..++|||+|||+++|+++|+++|++||+|+.|.+..+..++++++||||+|.+.++|++|| ++.+.|.+++|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 4689999999999999999999999999955443333337889999999999999999999 68999999999999998
Q ss_pred CCcch
Q 011893 82 PRDDQ 86 (475)
Q Consensus 82 ~~~~~ 86 (475)
++...
T Consensus 104 ~~~~~ 108 (115)
T 2cpx_A 104 NKKQR 108 (115)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 76543
No 295
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.59 E-value=7.9e-16 Score=123.28 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=65.9
Q ss_pred ceeeecCCCCCC------CHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCe-EEE
Q 011893 106 KKIFVGGLASTV------TESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGK-MVE 177 (475)
Q Consensus 106 ~~LfV~nLp~~~------teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr-~i~ 177 (475)
++|||+|||+.+ |+++|+++|++||.|++|.|+ +.+++++|||||+|+++++|++|++.++ ..|+|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 789999999999999999988 4678999999999999999999999988 899999 887
Q ss_pred E
Q 011893 178 V 178 (475)
Q Consensus 178 V 178 (475)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 296
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=125.56 Aligned_cols=77 Identities=27% Similarity=0.541 Sum_probs=70.6
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|++|+|+++ |+||||+|.++++|++|| ++.+.|.+++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 45689999999999999999999999999999999865 589999999999999999 7899999999999999
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpj_A 87 CHSAS 91 (99)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 87543
No 297
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=124.46 Aligned_cols=76 Identities=18% Similarity=0.307 Sum_probs=69.0
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
..++|||+|||+++++++|+++|++||+|+ +.|+.+ ++++||||+|.++++|++|| ++...|.+++|.|+++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 478999999999999999999999999997 677654 57899999999999999999 79999999999999997
Q ss_pred CCc
Q 011893 82 PRD 84 (475)
Q Consensus 82 ~~~ 84 (475)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 298
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.59 E-value=5.6e-15 Score=132.38 Aligned_cols=82 Identities=23% Similarity=0.414 Sum_probs=77.5
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccC
Q 011893 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVP 183 (475)
Q Consensus 105 ~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~ 183 (475)
.++|||+|||+++|+++|+++|++||.|++|.|++++.+++++|+|||+|.++++|++|++.++ ..|.+++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4789999999999999999999999999999999999899999999999999999999999877 899999999999987
Q ss_pred CCC
Q 011893 184 KEL 186 (475)
Q Consensus 184 k~~ 186 (475)
+..
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 299
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.59 E-value=4.7e-15 Score=133.40 Aligned_cols=84 Identities=21% Similarity=0.317 Sum_probs=78.5
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011893 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
..++|||+|||+++++++|+++|++||.|++|.|++++.+++++|||||+|+++++|++|++.++ ..|.+++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35789999999999999999999999999999999999999999999999999999999999877 89999999999998
Q ss_pred CCCCC
Q 011893 183 PKELS 187 (475)
Q Consensus 183 ~k~~~ 187 (475)
++...
T Consensus 82 ~~~~~ 86 (168)
T 1b7f_A 82 PGGES 86 (168)
T ss_dssp CCSST
T ss_pred CCccc
Confidence 76543
No 300
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.59 E-value=2.2e-15 Score=128.53 Aligned_cols=81 Identities=12% Similarity=0.251 Sum_probs=73.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
...++|||+|||+++|+++|+++|++||.|++|.|+.+. +++|||||+|++.++|++|++.++ +.|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 456899999999999999999999999999999999764 458999999999999999999887 8999999999999
Q ss_pred cCCCC
Q 011893 182 VPKEL 186 (475)
Q Consensus 182 ~~k~~ 186 (475)
.++..
T Consensus 83 ~~~~~ 87 (115)
T 3lqv_A 83 NANRA 87 (115)
T ss_dssp CHHHH
T ss_pred cCChh
Confidence 87543
No 301
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.3e-15 Score=121.28 Aligned_cols=74 Identities=22% Similarity=0.440 Sum_probs=68.8
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|++|+|+++ ||||+|.++++|++|| ++.+.|.+++|+|+++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 46789999999999999999999999999999999853 9999999999999999 7999999999999999
Q ss_pred CCCc
Q 011893 81 VPRD 84 (475)
Q Consensus 81 ~~~~ 84 (475)
.++.
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7754
No 302
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.6e-15 Score=120.04 Aligned_cols=74 Identities=27% Similarity=0.493 Sum_probs=68.0
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--H-cCcccCCeEEEEe
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--M-QKHMIDGRTVEAK 78 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~-~~~~i~gr~v~V~ 78 (475)
+...++|||+|||+++++++|+++|++||+|++|.|+++ ++||||+|.++++|++|+ + +.+.+.+++|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 356789999999999999999999999999999999974 589999999999999999 4 8889999999999
Q ss_pred ecC
Q 011893 79 KAV 81 (475)
Q Consensus 79 ~a~ 81 (475)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 303
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.58 E-value=2.1e-15 Score=124.52 Aligned_cols=81 Identities=20% Similarity=0.404 Sum_probs=73.8
Q ss_pred CcCcEEEEcCCCCCCcHHHHH----HHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEE
Q 011893 3 MELGKLFIGGISWDTNEDRLR----DYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVE 76 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLk----e~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~ 76 (475)
...++|||+|||+++++++|+ ++|++||+|++|.|++ ++++++||||+|.++++|++|+ ++...+.+++|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 457899999999999999999 9999999999999874 5678899999999999999999 799999999999
Q ss_pred EeecCCCcch
Q 011893 77 AKKAVPRDDQ 86 (475)
Q Consensus 77 V~~a~~~~~~ 86 (475)
|.++.++...
T Consensus 83 v~~a~~~~~~ 92 (97)
T 1nu4_A 83 IQYAKTDSDI 92 (97)
T ss_dssp EEECSSCCTH
T ss_pred EEEccCCCcc
Confidence 9999876544
No 304
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.58 E-value=4.8e-15 Score=125.78 Aligned_cols=76 Identities=22% Similarity=0.452 Sum_probs=69.8
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
+.+.++|||+|||+++++++|+++|++||+|++|.|+ +|||||+|.+.++|++|+ +++..|.+++|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567999999999999999999999999999999998 589999999999999999 799999999999999
Q ss_pred cCCCcc
Q 011893 80 AVPRDD 85 (475)
Q Consensus 80 a~~~~~ 85 (475)
+.++..
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 877543
No 305
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.58 E-value=3.2e-15 Score=138.19 Aligned_cols=81 Identities=22% Similarity=0.414 Sum_probs=75.7
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
..++|||+|||+++++++|+++|++||+|++|.|++++ ++++++||||+|.++++|++|| ++...|.+++|+|+++.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 35899999999999999999999999999999999998 8999999999999999999999 68899999999999987
Q ss_pred CCcc
Q 011893 82 PRDD 85 (475)
Q Consensus 82 ~~~~ 85 (475)
....
T Consensus 166 ~~~~ 169 (177)
T 2f3j_A 166 SQID 169 (177)
T ss_dssp SGGG
T ss_pred CCCC
Confidence 6543
No 306
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=4e-15 Score=130.27 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=72.8
Q ss_pred cCcEEEEcCCCCCCcHHHHH----HHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEE
Q 011893 4 ELGKLFIGGISWDTNEDRLR----DYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEA 77 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLk----e~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V 77 (475)
..++|||+|||+++++++|+ ++|++||+|++|.|++ ++++||||||+|.+.++|++|| +++..|.+++|+|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 46899999999999999876 6999999999988754 5788999999999999999999 7899999999999
Q ss_pred eecCCCcchhc
Q 011893 78 KKAVPRDDQNI 88 (475)
Q Consensus 78 ~~a~~~~~~~~ 88 (475)
.++..+.....
T Consensus 105 ~~a~~~~~~~~ 115 (127)
T 2a3j_A 105 TFSETPQSQVA 115 (127)
T ss_dssp EECCCCCHHHH
T ss_pred EEccCcchhcc
Confidence 99987765443
No 307
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=8.2e-15 Score=133.35 Aligned_cols=81 Identities=14% Similarity=0.211 Sum_probs=72.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCC--eEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNG--KMVEV 178 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~G--r~i~V 178 (475)
+....+|||+||++.+|+++|+++|++||.|++|+|+.+ ++++||||+|+++++|++|++.++ .+|.+ ++|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 455678999999999999999999999999999998744 257899999999999999999999 88865 99999
Q ss_pred EEccCCCC
Q 011893 179 KRAVPKEL 186 (475)
Q Consensus 179 ~~a~~k~~ 186 (475)
++++++..
T Consensus 119 ~~Ak~~~l 126 (164)
T 1sjr_A 119 DFSKLTSL 126 (164)
T ss_dssp EECSSSSC
T ss_pred EEecCCcc
Confidence 99998754
No 308
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=4.2e-15 Score=121.02 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=68.8
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011893 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
..++|||+|||++++++||+++|++| .|++|.|. ++||||||+|+++++|++|++.++ ++|+|++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999884 578999999999999999999888 89999999999986
Q ss_pred CCC
Q 011893 183 PKE 185 (475)
Q Consensus 183 ~k~ 185 (475)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 644
No 309
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.7e-15 Score=123.12 Aligned_cols=76 Identities=24% Similarity=0.425 Sum_probs=67.3
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCC-eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcC-cccCCeEEEEe
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGE-VLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQK-HMIDGRTVEAK 78 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~-V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~-~~i~gr~v~V~ 78 (475)
.+.++|||+|||++++|++|+++|++||+ |..+.++ +++||||+|.++++|++|| ++. +.|.+++|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 46789999999999999999999999999 5555553 3689999999999999999 788 89999999999
Q ss_pred ecCCCcc
Q 011893 79 KAVPRDD 85 (475)
Q Consensus 79 ~a~~~~~ 85 (475)
++.++..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9987654
No 310
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.57 E-value=2e-15 Score=124.53 Aligned_cols=78 Identities=26% Similarity=0.382 Sum_probs=69.6
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
+.+.++|||+|||+++++++|+++|++||+|+.+ +.+++++|||||+|.++++|++|| ++.+.|.+++|+|++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999887665 247889999999999999999999 688899999999999
Q ss_pred cCCCc
Q 011893 80 AVPRD 84 (475)
Q Consensus 80 a~~~~ 84 (475)
+.++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 87654
No 311
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.3e-15 Score=123.18 Aligned_cols=77 Identities=14% Similarity=0.153 Sum_probs=70.0
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEE-EEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEA-VIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v-~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
..++|||+|||+++++++|+++|++||+|++| .|++++.+++ |||+|.++++|++|| ++...|.+++|.|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 47899999999999999999999999999999 5888765543 999999999999999 8999999999999999
Q ss_pred CCCc
Q 011893 81 VPRD 84 (475)
Q Consensus 81 ~~~~ 84 (475)
.++.
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 8763
No 312
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=120.55 Aligned_cols=75 Identities=21% Similarity=0.430 Sum_probs=68.2
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhc--CCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEe
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAF--GEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~--G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~ 78 (475)
...++|||+|||+++++++|+++|++| |+|++|+++ ++||||+|.++++|++|| ++.+.|.+++|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 457899999999999999999999999 899988775 469999999999999999 89999999999999
Q ss_pred ecCCCcc
Q 011893 79 KAVPRDD 85 (475)
Q Consensus 79 ~a~~~~~ 85 (475)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9987543
No 313
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2.6e-15 Score=128.50 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=68.0
Q ss_pred CcCcEEEEcCCCCC-CcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--Hc--CcccCCeEEEE
Q 011893 3 MELGKLFIGGISWD-TNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQ--KHMIDGRTVEA 77 (475)
Q Consensus 3 ~d~~~LfVgnLP~d-~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~--~~~i~gr~v~V 77 (475)
...++|||+|||++ ++|+||+++|++||+|++|.|++. |+||||+|.++++|++|| ++ ...|.+|+|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 34789999999998 999999999999999999999853 689999999999999999 33 45699999999
Q ss_pred eecCCCcc
Q 011893 78 KKAVPRDD 85 (475)
Q Consensus 78 ~~a~~~~~ 85 (475)
.++..+..
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99976544
No 314
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4.2e-15 Score=126.73 Aligned_cols=77 Identities=10% Similarity=0.113 Sum_probs=70.1
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011893 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
..++|||+|||+++|+++|+++|++||.|++|.|++ .++||||+|+++++|++||+.++ +.|++++|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999999874 46799999999999999999988 89999999999997
Q ss_pred CCCC
Q 011893 183 PKEL 186 (475)
Q Consensus 183 ~k~~ 186 (475)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 6543
No 315
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.57 E-value=3.8e-15 Score=139.49 Aligned_cols=80 Identities=14% Similarity=0.262 Sum_probs=74.7
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEccC
Q 011893 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~~ 183 (475)
..++|||+|||+++|+++|+++|++||.|+.|+|++++. ++++|||||+|+++++|++||+.++++|+|++|+|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 457899999999999999999999999999999999875 8899999999999999999999888999999999999865
Q ss_pred C
Q 011893 184 K 184 (475)
Q Consensus 184 k 184 (475)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 316
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4e-15 Score=126.80 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=69.4
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
+++.++|||+|||+++++++|+++|++||+|++|.|++ +++||||+|.++++|++|| ++...|.+++|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999998875 4589999999999999999 899999999999999
Q ss_pred cCCC
Q 011893 80 AVPR 83 (475)
Q Consensus 80 a~~~ 83 (475)
+...
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 8653
No 317
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.57 E-value=1.9e-15 Score=134.17 Aligned_cols=87 Identities=25% Similarity=0.272 Sum_probs=72.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEE--E---eecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVV--V---MYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKM 175 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~--I---~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~ 175 (475)
..+.++|||+|||+++|+++|+++|++||.|+.|. + +....+++++|||||+|.+.++|++||+.++ +.|.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34568999999999999999999999999987741 1 1112458899999999999999999999888 8999999
Q ss_pred EEEEEccCCCCCC
Q 011893 176 VEVKRAVPKELSP 188 (475)
Q Consensus 176 i~V~~a~~k~~~~ 188 (475)
|.|.+|+++..+.
T Consensus 122 l~V~~a~~~~~~~ 134 (143)
T 3egn_A 122 MVVQFARSARPKQ 134 (143)
T ss_dssp CEEEECCCSCC--
T ss_pred EEEEECCCCCCcc
Confidence 9999998765443
No 318
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=5.2e-15 Score=120.46 Aligned_cols=74 Identities=9% Similarity=0.248 Sum_probs=68.4
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||++++|++|+++|++| +|++|+|. +++|||||+|.++++|++|+ ++...+.+++|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467899999999999999999999999 99999884 57899999999999999999 8999999999999998
Q ss_pred CCC
Q 011893 81 VPR 83 (475)
Q Consensus 81 ~~~ 83 (475)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 319
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.55 E-value=4e-15 Score=133.88 Aligned_cols=79 Identities=34% Similarity=0.730 Sum_probs=75.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecCCC
Q 011893 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVPR 83 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~~~ 83 (475)
.++|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|+ ++...+.+++|+|.++.++
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 579999999999999999999999999999999999889999999999999999999999 7788999999999999875
No 320
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.55 E-value=7.9e-15 Score=124.29 Aligned_cols=72 Identities=18% Similarity=0.438 Sum_probs=66.9
Q ss_pred CcEEEEcCCCCC-CcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011893 5 LGKLFIGGISWD-TNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 5 ~~~LfVgnLP~d-~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
.++|||+|||++ ++|++|+++|++||+|++|.| +++||||+|.++++|++|| ++.+.|.+++|+|+++.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 489999999999 999999999999999999998 4689999999999999999 78999999999999987
Q ss_pred CCc
Q 011893 82 PRD 84 (475)
Q Consensus 82 ~~~ 84 (475)
+..
T Consensus 99 ~~~ 101 (110)
T 1wf1_A 99 EPK 101 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 321
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.55 E-value=2e-14 Score=119.49 Aligned_cols=73 Identities=22% Similarity=0.470 Sum_probs=67.6
Q ss_pred CcCcEEEEcCCCC-CCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 3 MELGKLFIGGISW-DTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 3 ~d~~~LfVgnLP~-d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
.+.++|||+|||+ ++++++|+++|++||+|++|.|. +|||||+|.+.++|++|+ +++..+.+++|.|++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4678999999998 99999999999999999999983 589999999999999999 788999999999999
Q ss_pred cCCC
Q 011893 80 AVPR 83 (475)
Q Consensus 80 a~~~ 83 (475)
+..+
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8754
No 322
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.55 E-value=1.5e-14 Score=135.66 Aligned_cols=82 Identities=24% Similarity=0.564 Sum_probs=77.4
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
..++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++|+ ++...|.+++|+|.++.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 4589999999999999999999999999999999999889999999999999999999999 79999999999999998
Q ss_pred CCcc
Q 011893 82 PRDD 85 (475)
Q Consensus 82 ~~~~ 85 (475)
++..
T Consensus 204 ~~~~ 207 (216)
T 2qfj_A 204 TPPM 207 (216)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7643
No 323
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.7e-14 Score=129.09 Aligned_cols=79 Identities=29% Similarity=0.553 Sum_probs=75.2
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|+ +++..+.+++|+|.++
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 35679999999999999999999999999999999999889999999999999999999999 7999999999999998
Q ss_pred C
Q 011893 81 V 81 (475)
Q Consensus 81 ~ 81 (475)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 324
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=125.02 Aligned_cols=79 Identities=15% Similarity=0.319 Sum_probs=69.7
Q ss_pred CCcceeee--cCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-cee-----CCe
Q 011893 103 ARTKKIFV--GGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL-----NGK 174 (475)
Q Consensus 103 ~~~~~LfV--~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l-----~Gr 174 (475)
.++++||| +||++++|+++|+++|++||+|++|.|+.+ |+||||+|+++++|++|++.++ ++| .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45788999 679999999999999999999999988643 6899999999999999999998 888 789
Q ss_pred EEEEEEccCCCCC
Q 011893 175 MVEVKRAVPKELS 187 (475)
Q Consensus 175 ~i~V~~a~~k~~~ 187 (475)
+|.|.+++..+..
T Consensus 97 ~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 97 TLYLNFVEKVQWS 109 (114)
T ss_dssp ECEEEEESCCCCS
T ss_pred EEEEEecccCccc
Confidence 9999999765543
No 325
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.55 E-value=5e-15 Score=126.99 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=64.1
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeE-----E
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRT-----V 75 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~-----v 75 (475)
...++|||+|||++++|++|+++|++||+|++|.|+++ +||||+|+++++|++|| ++..+|++++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999876 89999999999999999 8899999988 6
Q ss_pred EEeecCCC
Q 011893 76 EAKKAVPR 83 (475)
Q Consensus 76 ~V~~a~~~ 83 (475)
+|+.+.++
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 66666553
No 326
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=7.6e-15 Score=121.42 Aligned_cols=75 Identities=21% Similarity=0.457 Sum_probs=68.2
Q ss_pred CcCcEEEEcCCCC-CCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011893 3 MELGKLFIGGISW-DTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 3 ~d~~~LfVgnLP~-d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
.+.++|||+|||+ ++++++|+++|++||+|++|.|. ++||||+|.++++|++|| ++...+.+++|.|++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4678999999998 99999999999999999999984 589999999999999999 789999999999999
Q ss_pred cCCCcc
Q 011893 80 AVPRDD 85 (475)
Q Consensus 80 a~~~~~ 85 (475)
+.++..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 876543
No 327
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.55 E-value=9.5e-15 Score=130.67 Aligned_cols=76 Identities=21% Similarity=0.382 Sum_probs=70.8
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||+++++++|+++|++||+|++|.|+++ ++|||||+|.++++|++|| ++...|.+++|+|+++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 35689999999999999999999999999999999886 5799999999999999999 7899999999999998
Q ss_pred CCC
Q 011893 81 VPR 83 (475)
Q Consensus 81 ~~~ 83 (475)
.++
T Consensus 146 ~~~ 148 (150)
T 2i2y_A 146 NGE 148 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 328
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.54 E-value=1.3e-14 Score=117.15 Aligned_cols=72 Identities=22% Similarity=0.518 Sum_probs=66.6
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhc----C-------CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcc
Q 011893 2 EMELGKLFIGGISWDTNEDRLRDYFQAF----G-------EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHM 69 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~----G-------~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~ 69 (475)
+.+.++|||+|||+++++++|+++|++| | +|++|.++++ ++||||+|.++++|++|+ ++.+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCE
Confidence 3568999999999999999999999999 8 8999998865 589999999999999999 88999
Q ss_pred cCCeEEEEee
Q 011893 70 IDGRTVEAKK 79 (475)
Q Consensus 70 i~gr~v~V~~ 79 (475)
+.+++|+|++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999975
No 329
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.54 E-value=1.1e-14 Score=126.35 Aligned_cols=78 Identities=23% Similarity=0.420 Sum_probs=69.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||+|| ++|+++|+++|++||.|++|.|. ++++||||+|++.++|++||+.++ ..|++++|+|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456789999996 69999999999999999999986 467899999999999999999888 899999999999
Q ss_pred ccCCCCC
Q 011893 181 AVPKELS 187 (475)
Q Consensus 181 a~~k~~~ 187 (475)
++++...
T Consensus 108 a~~~~~~ 114 (121)
T 2bz2_A 108 ARKQPML 114 (121)
T ss_dssp CCSSCC-
T ss_pred eCCCCCC
Confidence 9887543
No 330
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.54 E-value=3.3e-14 Score=124.72 Aligned_cols=80 Identities=15% Similarity=0.265 Sum_probs=71.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceE-EEEEecCHHHHHHHHHhcC-ceeCC--eEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGF-GFITYDSEEAVDKVLLKTF-HELNG--KMVE 177 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~-aFV~F~s~e~A~~Al~~~~-~~l~G--r~i~ 177 (475)
+.+..+|||+||++.+|+++|+++|++||.|++|+|+.+ .++| |||+|++.++|++|++.++ .+|.+ ++|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 355678899999999999999999999999999988754 3677 9999999999999999999 89988 9999
Q ss_pred EEEccCCCC
Q 011893 178 VKRAVPKEL 186 (475)
Q Consensus 178 V~~a~~k~~ 186 (475)
|.+++++..
T Consensus 100 I~~ak~~~l 108 (130)
T 3zzy_A 100 IDFSKLTSL 108 (130)
T ss_dssp EEECSCSSC
T ss_pred EEecCCCce
Confidence 999988754
No 331
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.2e-14 Score=126.37 Aligned_cols=78 Identities=21% Similarity=0.232 Sum_probs=69.7
Q ss_pred ceeeecCC----CCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecC----HHH----HHHHHH--hcC-ce
Q 011893 106 KKIFVGGL----ASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS----EEA----VDKVLL--KTF-HE 170 (475)
Q Consensus 106 ~~LfV~nL----p~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s----~e~----A~~Al~--~~~-~~ 170 (475)
.+|||+|| |+.+++++|+++|++||+|.+|.++.|++|++++|||||+|.+ +++ |.+|++ .++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 322 888888 556 89
Q ss_pred eCCeEEEEEEccC
Q 011893 171 LNGKMVEVKRAVP 183 (475)
Q Consensus 171 l~Gr~i~V~~a~~ 183 (475)
|+|++|+|...+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998643
No 332
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.5e-14 Score=125.81 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=68.9
Q ss_pred cEEEEcCC----CCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcC----HHH----HHHHHH----cCcc
Q 011893 6 GKLFIGGI----SWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD----PAV----AERVVM----QKHM 69 (475)
Q Consensus 6 ~~LfVgnL----P~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s----~e~----A~~Al~----~~~~ 69 (475)
++|||+|| |++++|++|+++|+.||+|.+|.++.|+.|++++|||||+|.+ +++ |.+|+. +...
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 433 788874 8889
Q ss_pred cCCeEEEEeecCC
Q 011893 70 IDGRTVEAKKAVP 82 (475)
Q Consensus 70 i~gr~v~V~~a~~ 82 (475)
|++++|+|+....
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999987643
No 333
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=2.2e-14 Score=115.80 Aligned_cols=71 Identities=18% Similarity=0.469 Sum_probs=64.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhc----C-------ceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ce
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQF----G-------IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HE 170 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~----G-------~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~ 170 (475)
.+.++|||+|||++++++||+++|++| | .|+++.|+++ |+||||+|+++++|++|+ .++ +.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456899999999999999999999999 8 8999998754 689999999999999999 777 89
Q ss_pred eCCeEEEEEE
Q 011893 171 LNGKMVEVKR 180 (475)
Q Consensus 171 l~Gr~i~V~~ 180 (475)
|+|++|+|++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 334
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.9e-14 Score=116.64 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=67.6
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|| ++++++|+++|++||+|++|.|. ++++||||+|.++++|++|| ++.+.|.+++|+|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35689999996 99999999999999999999985 35789999999999999999 6889999999999999
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
.++..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 77644
No 335
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=4.8e-14 Score=122.82 Aligned_cols=79 Identities=11% Similarity=0.191 Sum_probs=69.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceE-EEEEecCHHHHHHHHHhcC-ceeCC--eEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGF-GFITYDSEEAVDKVLLKTF-HELNG--KMVE 177 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~-aFV~F~s~e~A~~Al~~~~-~~l~G--r~i~ 177 (475)
+....+|||.||++.+|+++|+++|++||.|++|+|+.. +|| |||+|+++++|++|++.|+ .+|.+ +.|+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 345567889999999999999999999999999999642 276 9999999999999999998 88987 6999
Q ss_pred EEEccCCCC
Q 011893 178 VKRAVPKEL 186 (475)
Q Consensus 178 V~~a~~k~~ 186 (475)
|.+|+++..
T Consensus 96 V~~Ak~~~l 104 (124)
T 2e5i_A 96 IEYARPTRL 104 (124)
T ss_dssp EECCSCSCC
T ss_pred EEEecCCcc
Confidence 999988764
No 336
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.52 E-value=2.8e-14 Score=131.97 Aligned_cols=82 Identities=24% Similarity=0.489 Sum_probs=77.4
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...++|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|.++++|++|+ +++..|.+++|+|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35689999999999999999999999999999999999889999999999999999999999 7999999999999999
Q ss_pred CCCc
Q 011893 81 VPRD 84 (475)
Q Consensus 81 ~~~~ 84 (475)
.++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 337
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.52 E-value=4.4e-14 Score=128.55 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=69.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCC--eEEEEeec
Q 011893 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDG--RTVEAKKA 80 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~g--r~v~V~~a 80 (475)
..+|||+|||+++||++|+++|++||+|++|+|+.++ +++||||+|+++++|++|+ +++..|.+ ++|+|+++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 4579999999999999999999999999999997643 5789999999999999999 78999966 99999999
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
+++..
T Consensus 122 k~~~l 126 (164)
T 1sjr_A 122 KLTSL 126 (164)
T ss_dssp SSSSC
T ss_pred cCCcc
Confidence 87643
No 338
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.52 E-value=2.7e-14 Score=149.80 Aligned_cols=82 Identities=24% Similarity=0.485 Sum_probs=77.0
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
..++|||+|||++||+++|+++|++||+|+.|.|+.++.+++++|||||+|.++++|++|| ++.+.|.+++|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 3479999999999999999999999999999999999989999999999999999999999 78999999999999998
Q ss_pred CCcc
Q 011893 82 PRDD 85 (475)
Q Consensus 82 ~~~~ 85 (475)
++..
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 6543
No 339
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.52 E-value=4.8e-15 Score=131.56 Aligned_cols=84 Identities=13% Similarity=0.240 Sum_probs=70.9
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEE-----EecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEE
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVI-----MKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTV 75 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i-----~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v 75 (475)
...++|||+|||+++|+++|+++|++||+|+.|.+ ++.+.+++++|||||+|.+.++|++|| ++...|.++.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 35689999999999999999999999999887511 111236889999999999999999999 89999999999
Q ss_pred EEeecCCCcch
Q 011893 76 EAKKAVPRDDQ 86 (475)
Q Consensus 76 ~V~~a~~~~~~ 86 (475)
.|.++.+....
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999765443
No 340
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.52 E-value=2.8e-14 Score=129.00 Aligned_cols=76 Identities=26% Similarity=0.558 Sum_probs=73.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.++|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|+ ++++.+.+++|.|++|
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 589999999999999999999999999999999999889999999999999999999999 7999999999999987
No 341
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.50 E-value=3.3e-14 Score=133.10 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=72.4
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecCC
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~~ 82 (475)
+.++|||+|||+++++++|+++|++||+|++|.|++++ +++++|||||+|+++++|++|| ..++.+.+++|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 35899999999999999999999999999999999986 5899999999999999999999 456789999999998765
Q ss_pred C
Q 011893 83 R 83 (475)
Q Consensus 83 ~ 83 (475)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 342
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.50 E-value=4.8e-14 Score=127.44 Aligned_cols=84 Identities=21% Similarity=0.402 Sum_probs=74.8
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCC--ccceEEEEEecCHHHHHHHHHhcC-ceeC---CeEEE
Q 011893 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQ--RPRGFGFITYDSEEAVDKVLLKTF-HELN---GKMVE 177 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg--~~kG~aFV~F~s~e~A~~Al~~~~-~~l~---Gr~i~ 177 (475)
..++|||+|||+++|+++|+++|++||.|++|.|++++.++ +++|||||+|.++++|++|++.++ ..+. .+.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 35799999999999999999999999999999999999876 899999999999999999999887 5554 67888
Q ss_pred EEEccCCCCC
Q 011893 178 VKRAVPKELS 187 (475)
Q Consensus 178 V~~a~~k~~~ 187 (475)
|.++.++...
T Consensus 82 ~~~~~~~~~~ 91 (175)
T 3nmr_A 82 MKPADSEKNN 91 (175)
T ss_dssp EEECGGGCCS
T ss_pred Eccccccccc
Confidence 8888765543
No 343
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.50 E-value=8.5e-14 Score=117.73 Aligned_cols=81 Identities=14% Similarity=0.174 Sum_probs=72.0
Q ss_pred CCcceeeecCCCC-----CCCHHHHHHHHhhcCceeeEEEeecCCC-CccceEEEEEecCHHHHHHHHHhcC-ceeCCeE
Q 011893 103 ARTKKIFVGGLAS-----TVTESDFKKYFDQFGIITDVVVMYDHNT-QRPRGFGFITYDSEEAVDKVLLKTF-HELNGKM 175 (475)
Q Consensus 103 ~~~~~LfV~nLp~-----~~teedL~~~F~~~G~I~~v~I~~d~~t-g~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~ 175 (475)
.++++|+|.||.. +.+++||+++|++||.|++|.|++++.+ ++++|++||+|+++++|++|++.++ ..|+||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4568899999973 2478999999999999999999998764 5889999999999999999999998 8999999
Q ss_pred EEEEEccC
Q 011893 176 VEVKRAVP 183 (475)
Q Consensus 176 i~V~~a~~ 183 (475)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999965
No 344
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.48 E-value=1.4e-13 Score=120.73 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=68.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccE-EEEEEcCHHHHHHHH--HcCcccCC--eEEEEeec
Q 011893 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGF-GFIVFADPAVAERVV--MQKHMIDG--RTVEAKKA 80 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~-aFVeF~s~e~A~~Al--~~~~~i~g--r~v~V~~a 80 (475)
.+|||+||++++||++|+++|++||+|++|+|+++ .++| |||+|.+.++|++|+ +++..|.+ ++|+|+++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 47889999999999999999999999999998874 2578 999999999999999 89999988 99999999
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
+++..
T Consensus 104 k~~~l 108 (130)
T 3zzy_A 104 KLTSL 108 (130)
T ss_dssp SCSSC
T ss_pred CCCce
Confidence 87653
No 345
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=6.6e-14 Score=115.28 Aligned_cols=74 Identities=9% Similarity=0.188 Sum_probs=65.1
Q ss_pred Ccce-eeecCCCCCCCHHH----HHHHHhhc-CceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEE
Q 011893 104 RTKK-IFVGGLASTVTESD----FKKYFDQF-GIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMV 176 (475)
Q Consensus 104 ~~~~-LfV~nLp~~~teed----L~~~F~~~-G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i 176 (475)
+..+ |||.|||+.+++++ |+++|++| |+|++| ++ |+|||+|++.++|++|++.|+ .+|.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3455 99999999999988 55899999 599988 22 899999999999999999988 99999999
Q ss_pred EEEEccCCCCC
Q 011893 177 EVKRAVPKELS 187 (475)
Q Consensus 177 ~V~~a~~k~~~ 187 (475)
+|.+|+.+.+-
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999887654
No 346
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.48 E-value=9.7e-14 Score=131.06 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=71.3
Q ss_pred CcceeeecCCC-CCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011893 104 RTKKIFVGGLA-STVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 104 ~~~~LfV~nLp-~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
+.++|||+||| +.+|+++|+++|++||.|++|+|+++ +||||||+|+++++|++||+.++ ++|.|++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45789999999 89999999999999999999999865 37899999999999999999888 9999999999999
Q ss_pred cCCCC
Q 011893 182 VPKEL 186 (475)
Q Consensus 182 ~~k~~ 186 (475)
+.+..
T Consensus 78 ~~~~~ 82 (205)
T 3tyt_A 78 KQPAI 82 (205)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 76543
No 347
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.6e-14 Score=120.52 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=66.0
Q ss_pred CcCcEEEE--cCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCccc-----CCe
Q 011893 3 MELGKLFI--GGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMI-----DGR 73 (475)
Q Consensus 3 ~d~~~LfV--gnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i-----~gr 73 (475)
...++||| +||+++++|++|+++|++||+|++|+|+.+ |+||||+|.++++|++|+ ++.+++ .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34678999 669999999999999999999999888643 689999999999999999 788877 678
Q ss_pred EEEEeecCCCcc
Q 011893 74 TVEAKKAVPRDD 85 (475)
Q Consensus 74 ~v~V~~a~~~~~ 85 (475)
+|.|..+...++
T Consensus 97 ~l~v~~a~~~p~ 108 (114)
T 2cq2_A 97 TLYLNFVEKVQW 108 (114)
T ss_dssp ECEEEEESCCCC
T ss_pred EEEEEecccCcc
Confidence 888888765443
No 348
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4.7e-13 Score=113.99 Aligned_cols=83 Identities=12% Similarity=0.263 Sum_probs=71.1
Q ss_pred CCCCcceeeecCCCCCCC-----------HHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-
Q 011893 101 GPARTKKIFVGGLASTVT-----------ESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF- 168 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~t-----------eedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~- 168 (475)
.+.++++|+|.||....+ +++|+++|++||.|++|.| .++ .++|||||+|+++++|++|++.++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345678999999955432 6899999999999999966 554 379999999999999999999998
Q ss_pred ceeCCeEEEEEEccCCCCC
Q 011893 169 HELNGKMVEVKRAVPKELS 187 (475)
Q Consensus 169 ~~l~Gr~i~V~~a~~k~~~ 187 (475)
+.|++++|+|.++.++...
T Consensus 87 ~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CEETTEECEEEECCSCCCS
T ss_pred CEECCcEEEEEEeCCCCCc
Confidence 8999999999999887654
No 349
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=3.1e-13 Score=117.68 Aligned_cols=74 Identities=22% Similarity=0.210 Sum_probs=66.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccE-EEEEEcCHHHHHHHH--HcCcccCC--eEEEEeec
Q 011893 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGF-GFIVFADPAVAERVV--MQKHMIDG--RTVEAKKA 80 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~-aFVeF~s~e~A~~Al--~~~~~i~g--r~v~V~~a 80 (475)
.+|||+|||+++++++|+++|++||+|++|+|++. +|| |||+|.+.++|++|+ +++..|.+ ++|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 35789999999999999999999999999999762 286 999999999999999 89999987 69999999
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
+++..
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 87653
No 350
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.45 E-value=2.6e-13 Score=133.07 Aligned_cols=83 Identities=19% Similarity=0.359 Sum_probs=74.9
Q ss_pred CCCCcceeeecCCCCCCCHHHHH----HHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeE
Q 011893 101 GPARTKKIFVGGLASTVTESDFK----KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKM 175 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~----~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~ 175 (475)
+....++|||+|||+++|+++|+ ++|++||.|++|+|++ ++++||||||+|+++++|++||+.++ ..|.++.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34567899999999999999977 8999999999999886 57889999999999999999998888 8999999
Q ss_pred EEEEEccCCCC
Q 011893 176 VEVKRAVPKEL 186 (475)
Q Consensus 176 i~V~~a~~k~~ 186 (475)
|+|.+++++..
T Consensus 82 l~v~~a~~~~~ 92 (282)
T 3pgw_A 82 MRIQYAKTDSD 92 (282)
T ss_pred EEEEEeccCcc
Confidence 99999976553
No 351
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.44 E-value=3.2e-13 Score=114.18 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=72.1
Q ss_pred CCcCcEEEEcCCCC-----CCcHHHHHHHHhhcCCeeEEEEEecCCC-CCcccEEEEEEcCHHHHHHHH--HcCcccCCe
Q 011893 2 EMELGKLFIGGISW-----DTNEDRLRDYFQAFGEVLEAVIMKDRAT-GRARGFGFIVFADPAVAERVV--MQKHMIDGR 73 (475)
Q Consensus 2 e~d~~~LfVgnLP~-----d~teedLke~F~~~G~V~~v~i~~dk~t-G~srG~aFVeF~s~e~A~~Al--~~~~~i~gr 73 (475)
...+++|+|.||.. +.++++|+++|++||+|++|+|++++.+ ++++|||||+|.++++|++|+ ++++.+.+|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678999999962 3478999999999999999999998654 688999999999999999999 899999999
Q ss_pred EEEEeecCCC
Q 011893 74 TVEAKKAVPR 83 (475)
Q Consensus 74 ~v~V~~a~~~ 83 (475)
+|.|.++.+.
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999998753
No 352
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.44 E-value=7.8e-14 Score=126.66 Aligned_cols=86 Identities=19% Similarity=0.350 Sum_probs=74.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEE
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~ 180 (475)
.+...++|||+|||+++|++||+++|++||.|.. .++.+..+++++|||||+|+++++|++||+...+.|.+++|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 4466799999999999999999999999998877 445555678899999999999999999996333899999999999
Q ss_pred ccCCCCC
Q 011893 181 AVPKELS 187 (475)
Q Consensus 181 a~~k~~~ 187 (475)
+.++...
T Consensus 88 ~~~~~~~ 94 (175)
T 1fje_B 88 PKGRDSK 94 (175)
T ss_dssp CCCSSCS
T ss_pred CCCcccc
Confidence 9876543
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.43 E-value=2.7e-13 Score=117.44 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=67.7
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||+|| ++++++|+++|++||+|++|.|. ++++||||+|.+.++|++|| ++...|.+++|.|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 35689999995 79999999999999999999996 35799999999999999999 7899999999999999
Q ss_pred CCCcc
Q 011893 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
.++..
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87643
No 354
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.41 E-value=3.6e-13 Score=128.70 Aligned_cols=80 Identities=15% Similarity=0.306 Sum_probs=73.0
Q ss_pred CCCcceeeecCCCC-CCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011893 102 PARTKKIFVGGLAS-TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 102 ~~~~~~LfV~nLp~-~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
....++|||+|||+ ++++++|+++|++||.|++|+|++++ ++||||+|.++++|++||+.++ ..|.+++|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35678999999999 99999999999999999999999875 7899999999999999999777 89999999999
Q ss_pred EccCCCC
Q 011893 180 RAVPKEL 186 (475)
Q Consensus 180 ~a~~k~~ 186 (475)
+++++..
T Consensus 106 ~a~~~~~ 112 (229)
T 2adc_A 106 LSKHQNV 112 (229)
T ss_dssp CCSCCCC
T ss_pred EecCccc
Confidence 9987643
No 355
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=6.2e-13 Score=109.46 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=63.3
Q ss_pred CcE-EEEcCCCCCCcHHHH----HHHHhhc-CCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEE
Q 011893 5 LGK-LFIGGISWDTNEDRL----RDYFQAF-GEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVE 76 (475)
Q Consensus 5 ~~~-LfVgnLP~d~teedL----ke~F~~~-G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~ 76 (475)
+.+ |||+|||+++++++| +++|++| |+|.+| ++ |+|||+|.+.++|++|+ ++...+.+|+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 444 999999999999884 5899999 599988 23 99999999999999999 899999999999
Q ss_pred EeecCCCcch
Q 011893 77 AKKAVPRDDQ 86 (475)
Q Consensus 77 V~~a~~~~~~ 86 (475)
|..|+.+.+.
T Consensus 78 v~~A~~~sd~ 87 (96)
T 2diu_A 78 VSFTPKNREL 87 (96)
T ss_dssp EESSCCSCCC
T ss_pred EEecCCCcce
Confidence 9999876543
No 356
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.40 E-value=3.5e-13 Score=130.07 Aligned_cols=79 Identities=25% Similarity=0.367 Sum_probs=68.5
Q ss_pred CCcCcEEEEcCCCCCC---------cHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCccc
Q 011893 2 EMELGKLFIGGISWDT---------NEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMI 70 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~---------teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i 70 (475)
+.+.++|||+|||.++ +|++|+++|++||+|++|+|+++ ||||||+|.+.++|++|+ ++.+.|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3567899999999998 79999999999999999999864 699999999999999999 888888
Q ss_pred ------------CCeEEEEeecCCCcch
Q 011893 71 ------------DGRTVEAKKAVPRDDQ 86 (475)
Q Consensus 71 ------------~gr~v~V~~a~~~~~~ 86 (475)
.++.|.|++|......
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred eccccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999875543
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.39 E-value=3.4e-13 Score=130.16 Aligned_cols=79 Identities=20% Similarity=0.339 Sum_probs=69.2
Q ss_pred CCCcceeeecCCCCCC---------CHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-cee
Q 011893 102 PARTKKIFVGGLASTV---------TESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL 171 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~---------teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l 171 (475)
....++|||+||+..+ +|++|+++|++||.|++|+|+. .||||||+|+++++|++|++.|+ ..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 7999999999999999999985 37899999999999999999988 778
Q ss_pred ------------CCeEEEEEEccCCCC
Q 011893 172 ------------NGKMVEVKRAVPKEL 186 (475)
Q Consensus 172 ------------~Gr~i~V~~a~~k~~ 186 (475)
.++.|.|++|++.+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 358
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.2e-12 Score=108.07 Aligned_cols=68 Identities=7% Similarity=0.202 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEccCCCCCC
Q 011893 115 STVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 188 (475)
Q Consensus 115 ~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~~k~~~~ 188 (475)
..+++++|+++|++||.|++|.|+ +++||||||+|+++++|++||+.+ ..+.+++|+|++++++....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE-VGLVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCeEEEEEccCCCCCC
Confidence 569999999999999999999998 367999999999999999999985 45789999999998876544
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.36 E-value=9.8e-13 Score=111.13 Aligned_cols=81 Identities=12% Similarity=0.196 Sum_probs=69.9
Q ss_pred CCcceeeecCC--CCCCC--------HHHHHHHHhhcCceeeEEEeecCCC--CccceEEEEEecCHHHHHHHHHhcC-c
Q 011893 103 ARTKKIFVGGL--ASTVT--------ESDFKKYFDQFGIITDVVVMYDHNT--QRPRGFGFITYDSEEAVDKVLLKTF-H 169 (475)
Q Consensus 103 ~~~~~LfV~nL--p~~~t--------eedL~~~F~~~G~I~~v~I~~d~~t--g~~kG~aFV~F~s~e~A~~Al~~~~-~ 169 (475)
.+++.|.|.|+ |..+. ++||+++|++||.|++|.|++++.+ .+++|++||+|+++++|++|++.|+ .
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678888887 43443 4799999999999999999998765 3689999999999999999999999 9
Q ss_pred eeCCeEEEEEEccC
Q 011893 170 ELNGKMVEVKRAVP 183 (475)
Q Consensus 170 ~l~Gr~i~V~~a~~ 183 (475)
.|+||+|.|.++.+
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999765
No 360
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.36 E-value=6.3e-13 Score=123.35 Aligned_cols=77 Identities=14% Similarity=0.319 Sum_probs=71.0
Q ss_pred cceeeecCCCC-CCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011893 105 TKKIFVGGLAS-TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 105 ~~~LfV~nLp~-~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
.++|||+|||+ ++++++|+++|++||.|++|.|++++ +|||||+|+++++|++|++.++ ..|.+++|.|.+++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 47899999999 99999999999999999999999775 6799999999999999999777 89999999999998
Q ss_pred CCCC
Q 011893 183 PKEL 186 (475)
Q Consensus 183 ~k~~ 186 (475)
++..
T Consensus 78 ~~~~ 81 (198)
T 1qm9_A 78 HQNV 81 (198)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 7653
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=3.9e-12 Score=108.24 Aligned_cols=79 Identities=20% Similarity=0.312 Sum_probs=67.2
Q ss_pred CcCcEEEEcCCCCCC-----------cHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcc
Q 011893 3 MELGKLFIGGISWDT-----------NEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHM 69 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~-----------teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~ 69 (475)
...++|+|.||.... ++++|+++|++||+|++|.| .++ .++|||||+|.++++|++|| ++.+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 347899999994433 26899999999999999966 554 37999999999999999999 78899
Q ss_pred cCCeEEEEeecCCCcc
Q 011893 70 IDGRTVEAKKAVPRDD 85 (475)
Q Consensus 70 i~gr~v~V~~a~~~~~ 85 (475)
|.+|+|.|.++.++..
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999977654
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.3e-12 Score=104.89 Aligned_cols=76 Identities=21% Similarity=0.181 Sum_probs=65.6
Q ss_pred cCcEEEEcCCC-------CCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHcCcccCCeEEE
Q 011893 4 ELGKLFIGGIS-------WDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVE 76 (475)
Q Consensus 4 d~~~LfVgnLP-------~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al~~~~~i~gr~v~ 76 (475)
..++|.|.-.. .+++|++|+++|++||+|++|.|+. ++||||||+|+++++|++||.....+.+++|.
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~ 83 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVGLVDNPLK 83 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCBCSSSBCE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCCCCCCeEE
Confidence 45678777665 3589999999999999999999983 57899999999999999999767778899999
Q ss_pred EeecCCCc
Q 011893 77 AKKAVPRD 84 (475)
Q Consensus 77 V~~a~~~~ 84 (475)
|+++.++.
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99987654
No 363
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.31 E-value=5.5e-12 Score=122.84 Aligned_cols=76 Identities=29% Similarity=0.536 Sum_probs=69.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011893 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||+|||+++|+++|+++|++||.|++|.|.++ +|||||+|.++++|++|++.++ +.|.++.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 356689999999999999999999999999999999643 6899999999999999999887 899999999999
Q ss_pred ccC
Q 011893 181 AVP 183 (475)
Q Consensus 181 a~~ 183 (475)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 865
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.30 E-value=5.1e-12 Score=109.04 Aligned_cols=80 Identities=10% Similarity=0.156 Sum_probs=69.3
Q ss_pred CcceeeecCCCCC-----CCHHHHHHHHhhcCceeeEEEeecCC----CCccceEEEEEecCHHHHHHHHHhcC-ceeCC
Q 011893 104 RTKKIFVGGLAST-----VTESDFKKYFDQFGIITDVVVMYDHN----TQRPRGFGFITYDSEEAVDKVLLKTF-HELNG 173 (475)
Q Consensus 104 ~~~~LfV~nLp~~-----~teedL~~~F~~~G~I~~v~I~~d~~----tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~G 173 (475)
++++|+|.|+-.. -.++||+++|++||.|++|.|++++. +++++|++||+|+++++|++|++.++ ..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4678888887422 24689999999999999999999865 45788999999999999999999999 99999
Q ss_pred eEEEEEEccC
Q 011893 174 KMVEVKRAVP 183 (475)
Q Consensus 174 r~i~V~~a~~ 183 (475)
|+|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999754
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.30 E-value=1.4e-12 Score=110.05 Aligned_cols=71 Identities=17% Similarity=0.394 Sum_probs=62.8
Q ss_pred ecCCCCCCCHHHHHHHH------------hhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEE
Q 011893 110 VGGLASTVTESDFKKYF------------DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMV 176 (475)
Q Consensus 110 V~nLp~~~teedL~~~F------------~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i 176 (475)
+.+||+.+++++|+++| ++||.|++|.|++++. +++||||||+|+++++|++|++.++ +.|+||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 55777888887777666 9999999999998865 7899999999999999999999988 89999999
Q ss_pred EEEEc
Q 011893 177 EVKRA 181 (475)
Q Consensus 177 ~V~~a 181 (475)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 366
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.26 E-value=6.5e-12 Score=106.04 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=69.8
Q ss_pred cCcEEEEcCC--CCCCc--------HHHHHHHHhhcCCeeEEEEEecCCC--CCcccEEEEEEcCHHHHHHHH--HcCcc
Q 011893 4 ELGKLFIGGI--SWDTN--------EDRLRDYFQAFGEVLEAVIMKDRAT--GRARGFGFIVFADPAVAERVV--MQKHM 69 (475)
Q Consensus 4 d~~~LfVgnL--P~d~t--------eedLke~F~~~G~V~~v~i~~dk~t--G~srG~aFVeF~s~e~A~~Al--~~~~~ 69 (475)
.++.|.|.|+ |.++. ++||+++|++||+|++|+|++++.+ .+++||+||+|+++++|++|+ +++..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5788999998 55543 4799999999999999999998754 368999999999999999999 99999
Q ss_pred cCCeEEEEeecCCC
Q 011893 70 IDGRTVEAKKAVPR 83 (475)
Q Consensus 70 i~gr~v~V~~a~~~ 83 (475)
+.+|+|.|..+.+.
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999987654
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.26 E-value=2.8e-12 Score=108.10 Aligned_cols=70 Identities=17% Similarity=0.363 Sum_probs=60.4
Q ss_pred EcCCCCCCcHHHHHHHH------------hhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEE
Q 011893 10 IGGISWDTNEDRLRDYF------------QAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTV 75 (475)
Q Consensus 10 VgnLP~d~teedLke~F------------~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v 75 (475)
+.+||+++++++|+++| ++||+|++|+|++++ +++++|||||+|.++++|++|+ ++++.+.+|+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 34566667777776666 999999999999986 4789999999999999999999 89999999999
Q ss_pred EEeec
Q 011893 76 EAKKA 80 (475)
Q Consensus 76 ~V~~a 80 (475)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.22 E-value=2.5e-11 Score=104.70 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=69.4
Q ss_pred cCcEEEEcCCC--CCC---cHHHHHHHHhhcCCeeEEEEEecCC----CCCcccEEEEEEcCHHHHHHHH--HcCcccCC
Q 011893 4 ELGKLFIGGIS--WDT---NEDRLRDYFQAFGEVLEAVIMKDRA----TGRARGFGFIVFADPAVAERVV--MQKHMIDG 72 (475)
Q Consensus 4 d~~~LfVgnLP--~d~---teedLke~F~~~G~V~~v~i~~dk~----tG~srG~aFVeF~s~e~A~~Al--~~~~~i~g 72 (475)
.+++|+|.|+- .++ .++||+++|++||+|++|+|++++. +++++||+||+|.++++|++|+ +++..+.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 47899999993 332 4789999999999999999999864 3577899999999999999999 89999999
Q ss_pred eEEEEeecCC
Q 011893 73 RTVEAKKAVP 82 (475)
Q Consensus 73 r~v~V~~a~~ 82 (475)
|+|.|..+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998764
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.15 E-value=8.2e-11 Score=100.83 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=64.8
Q ss_pred CCcceeeecCCCCCCC----------HHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-cee
Q 011893 103 ARTKKIFVGGLASTVT----------ESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL 171 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~t----------eedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l 171 (475)
.++++|.|.|+-.... ++||+++|++||.|++|.|.++. ++|++||+|+++++|++|++.|+ ..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4567777777644322 36889999999999999997653 58999999999999999999999 899
Q ss_pred CCeEEEEEEccC
Q 011893 172 NGKMVEVKRAVP 183 (475)
Q Consensus 172 ~Gr~i~V~~a~~ 183 (475)
+||+|.|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999864
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.11 E-value=1.2e-10 Score=118.14 Aligned_cols=75 Identities=13% Similarity=0.299 Sum_probs=63.1
Q ss_pred CCCcceeeecC--CCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-cee---CCe-
Q 011893 102 PARTKKIFVGG--LASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL---NGK- 174 (475)
Q Consensus 102 ~~~~~~LfV~n--Lp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l---~Gr- 174 (475)
..++++|||+| |++.+||++|+++|++||+|++|.|.. .||||||+|++.++|++|++.+| +++ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45678999999 688999999999999999999987753 47899999999999999999999 666 345
Q ss_pred -EEEEEEcc
Q 011893 175 -MVEVKRAV 182 (475)
Q Consensus 175 -~i~V~~a~ 182 (475)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 46666653
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.10 E-value=2.1e-10 Score=116.30 Aligned_cols=109 Identities=8% Similarity=0.151 Sum_probs=75.5
Q ss_pred CCcCcEEEEcC--CCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccC---Ce-
Q 011893 2 EMELGKLFIGG--ISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMID---GR- 73 (475)
Q Consensus 2 e~d~~~LfVgn--LP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~---gr- 73 (475)
+...++|||+| |++++||++|+++|++||+|++|+|.+ .||||||+|++.++|++|| +++..+. ++
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34578999999 588999999999999999999887754 4699999999999999999 7777662 44
Q ss_pred -EEEEeecCCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhc
Q 011893 74 -TVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQF 129 (475)
Q Consensus 74 -~v~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~ 129 (475)
.|.|..+......... . ...+.--.+ +|..++++|-.++++..
T Consensus 89 ~~ly~~~~~~~~~~~~~--~--------~~lp~Gl~~---~p~fis~~Ee~~Ll~~i 132 (345)
T 3tht_A 89 ITLYLNFVEKVQWKELR--P--------QALPPGLMV---VEEIISSEEEKMLLESV 132 (345)
T ss_dssp EECEEEECSSEEEEEEE--C--------CSCCTTEEE---ETTCSCHHHHHHHHTTC
T ss_pred eEEEEEEeecccccccc--c--------ccCCCceEE---EcCcCCHHHHHHHHHhc
Confidence 4566655322211110 0 001112223 46668887777777653
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=1e-09 Score=94.71 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=69.1
Q ss_pred CCCCCCCcceeeecCCCCC-CCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecC-HHHHHHHHHhcC---ceeC
Q 011893 98 GSPGPARTKKIFVGGLAST-VTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLLKTF---HELN 172 (475)
Q Consensus 98 ~~~~~~~~~~LfV~nLp~~-~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s-~e~A~~Al~~~~---~~l~ 172 (475)
.+....+...|+|.||++. +++++|+++|++||.|..|+|+++.. .|||+|.+ +++|++|+++++ .+|+
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 3445567789999999999 99999999999999999999998876 59999999 899999999884 6899
Q ss_pred CeEEEEEEcc
Q 011893 173 GKMVEVKRAV 182 (475)
Q Consensus 173 Gr~i~V~~a~ 182 (475)
+..++++...
T Consensus 85 g~~~~~evL~ 94 (121)
T 1owx_A 85 NKEVTWEVLE 94 (121)
T ss_dssp SSSEEEEECC
T ss_pred CcEEEEEECC
Confidence 9988887643
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.96 E-value=1.8e-09 Score=92.46 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=64.6
Q ss_pred cCcEEEEcCCC--CC--------CcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccC
Q 011893 4 ELGKLFIGGIS--WD--------TNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMID 71 (475)
Q Consensus 4 d~~~LfVgnLP--~d--------~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~ 71 (475)
.++.|.|.|+= .+ ..++||+++|++||+|++|.|.++. .+||+||+|+++++|++|+ +++..+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46788888883 22 1246889999999999999997753 5899999999999999999 8999999
Q ss_pred CeEEEEeecCCCc
Q 011893 72 GRTVEAKKAVPRD 84 (475)
Q Consensus 72 gr~v~V~~a~~~~ 84 (475)
+|+|.|.++....
T Consensus 82 GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 82 GKMITAAYVPLPT 94 (114)
T ss_dssp TEECEEEEECHHH
T ss_pred CEEEEEEEEcHHH
Confidence 9999999986544
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=2.7e-09 Score=86.95 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=60.2
Q ss_pred CcceeeecCCC----CCCCH----HHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCe
Q 011893 104 RTKKIFVGGLA----STVTE----SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGK 174 (475)
Q Consensus 104 ~~~~LfV~nLp----~~~te----edL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr 174 (475)
+.-+|+|.-++ .++.+ .+|++.|.+||+|+.++|+.|+ +||+|++.++|.+||+ ++ .++.||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 44567776665 23334 6799999999999999999874 8999999999999999 66 999999
Q ss_pred EEEEEEccCC
Q 011893 175 MVEVKRAVPK 184 (475)
Q Consensus 175 ~i~V~~a~~k 184 (475)
.|+|+.++|.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999999874
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=2.9e-09 Score=91.86 Aligned_cols=72 Identities=18% Similarity=0.101 Sum_probs=62.2
Q ss_pred cCcEEEEcCCCCC-CcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcC-HHHHHHHH--H--cCcccCCeEEEE
Q 011893 4 ELGKLFIGGISWD-TNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD-PAVAERVV--M--QKHMIDGRTVEA 77 (475)
Q Consensus 4 d~~~LfVgnLP~d-~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s-~e~A~~Al--~--~~~~i~gr~v~V 77 (475)
..+.|||+||+++ +++++|+++|++||+|..|++++++. .|||+|.+ +++|++|+ + .+..|.+..+.+
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 3578999999999 99999999999999999999999864 49999999 88999888 3 467788888777
Q ss_pred eecC
Q 011893 78 KKAV 81 (475)
Q Consensus 78 ~~a~ 81 (475)
+...
T Consensus 91 evL~ 94 (121)
T 1owx_A 91 EVLE 94 (121)
T ss_dssp EECC
T ss_pred EECC
Confidence 6554
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.8e-08 Score=82.51 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=60.5
Q ss_pred CCcceeeecCCCCC-----CCH----HHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeC
Q 011893 103 ARTKKIFVGGLAST-----VTE----SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN 172 (475)
Q Consensus 103 ~~~~~LfV~nLp~~-----~te----edL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~ 172 (475)
++..+|+|.-++.. +.+ .+|.+.|.+||+|+.++|+.|+ +||+|.+.++|.+||+ ++ .+++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45678888877643 222 5699999999999999999874 9999999999999999 65 9999
Q ss_pred CeEEEEEEccC
Q 011893 173 GKMVEVKRAVP 183 (475)
Q Consensus 173 Gr~i~V~~a~~ 183 (475)
+|.|+|++..+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998754
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=4.8e-08 Score=79.58 Aligned_cols=70 Identities=23% Similarity=0.348 Sum_probs=59.6
Q ss_pred CcEEEEcCCC----CCCcH----HHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEE
Q 011893 5 LGKLFIGGIS----WDTNE----DRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTV 75 (475)
Q Consensus 5 ~~~LfVgnLP----~d~te----edLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v 75 (475)
.-+|+|.-+| .++-+ .+|++.|.+||+|..++|+.++ +||+|.+.++|.+|| ++...+.+|.|
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~L 78 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRTI 78 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeEE
Confidence 4577777666 22333 6789999999999999999985 899999999999999 99999999999
Q ss_pred EEeecCC
Q 011893 76 EAKKAVP 82 (475)
Q Consensus 76 ~V~~a~~ 82 (475)
+|+.+.+
T Consensus 79 kV~lkt~ 85 (91)
T 2dnr_A 79 TIALKSP 85 (91)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9998765
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.58 E-value=6.7e-08 Score=91.43 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHhhcCceeeEEEeecC----CCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccC
Q 011893 116 TVTESDFKKYFDQFGIITDVVVMYDH----NTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVP 183 (475)
Q Consensus 116 ~~teedL~~~F~~~G~I~~v~I~~d~----~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~ 183 (475)
.-.+++|++.|++||.|+++.|+++. ++++++|++||+|++.++|++|++.++ ..|.||+|.|.+...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34678999999999999999998654 445899999999999999999999999 899999999998753
No 379
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=7e-07 Score=74.05 Aligned_cols=87 Identities=25% Similarity=0.370 Sum_probs=72.6
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhh-----cCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHc-CcccCCeEEEE
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQA-----FGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ-KHMIDGRTVEA 77 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~-----~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al~~-~~~i~gr~v~V 77 (475)
-.++|.|.|||.+++++.|+-+|+. =|+|++++... .-|+|+|.+++.|+++|.. .|.+++.+|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 3579999999999999999999987 26888877755 2589999999999999955 99999999999
Q ss_pred eecCCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCC
Q 011893 78 KKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVT 118 (475)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~t 118 (475)
....+ ....+|++++||+.++
T Consensus 79 ~P~~~--------------------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPP--------------------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp EECCC--------------------CCCCCCCCCSCCCCCC
T ss_pred EcCCC--------------------CCcceEeeecCCCCCC
Confidence 76543 3446799999998865
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.46 E-value=2.7e-07 Score=87.18 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=59.0
Q ss_pred CcHHHHHHHHhhcCCeeEEEEEecCC----CCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCC
Q 011893 17 TNEDRLRDYFQAFGEVLEAVIMKDRA----TGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 17 ~teedLke~F~~~G~V~~v~i~~dk~----tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~ 82 (475)
..+++|++.|++||+|++|.|+++.. +++++|++||+|.+.++|++|+ +++..+.||+|.+.....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 46789999999999999999986543 4589999999999999999999 999999999999998754
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=1.9e-07 Score=76.54 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=59.0
Q ss_pred CcEEEEcCCCCC-----CcH----HHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeE
Q 011893 5 LGKLFIGGISWD-----TNE----DRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRT 74 (475)
Q Consensus 5 ~~~LfVgnLP~d-----~te----edLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~ 74 (475)
.-+|+|.-++.+ +-+ .+|++.|.+||+|+.++|+.++ +||+|.+.++|.+|| ++...+.+|.
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 468888877643 222 5689999999999999999985 999999999999999 9999999999
Q ss_pred EEEeecC
Q 011893 75 VEAKKAV 81 (475)
Q Consensus 75 v~V~~a~ 81 (475)
|+|+...
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9998643
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.31 E-value=2.8e-06 Score=71.14 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=64.3
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhc-----CceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEE
Q 011893 104 RTKKIFVGGLASTVTESDFKKYFDQF-----GIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVE 177 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~-----G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~ 177 (475)
..++|-|-+||..++++.|+.+++++ +.|++|.+..|.. =|+|+|++..+|-+|...++ .+|++|+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35788899999999999999999999 9999999998875 59999999999998887777 899999999
Q ss_pred EEE
Q 011893 178 VKR 180 (475)
Q Consensus 178 V~~ 180 (475)
|.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 864
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.17 E-value=6.7e-06 Score=68.83 Aligned_cols=72 Identities=11% Similarity=0.201 Sum_probs=65.7
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhc-----CCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEE
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAF-----GEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTV 75 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~-----G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v 75 (475)
.+.++|=|-+||-.++++.|+.|++++ ++|+.|.+..|. +=|+|+|+|...|-||. +++.+|.+|+|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 357899999999999999999999999 999999999985 45999999999999998 89999999999
Q ss_pred EEeec
Q 011893 76 EAKKA 80 (475)
Q Consensus 76 ~V~~a 80 (475)
++...
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 99754
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1.3e-05 Score=66.44 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=65.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhh-----cCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEE
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQ-----FGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVE 177 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~-----~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~ 177 (475)
...++|.|.|||..+.++.|+-+||. =|+|+.++... .-|+|+|.+.+.|+++|++..|.|++.+|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 44689999999999999999999987 25788887753 269999999999999999988999999999
Q ss_pred EEEccCCCCC
Q 011893 178 VKRAVPKELS 187 (475)
Q Consensus 178 V~~a~~k~~~ 187 (475)
|....++...
T Consensus 78 V~P~~~~~~~ 87 (104)
T 2dhx_A 78 LRPAPPRAPA 87 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEcCCCCCcc
Confidence 9887666543
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.43 E-value=0.00031 Score=58.38 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=62.6
Q ss_pred cceeeecCCCCCC-C----HHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEE
Q 011893 105 TKKIFVGGLASTV-T----ESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEV 178 (475)
Q Consensus 105 ~~~LfV~nLp~~~-t----eedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V 178 (475)
.++|+|.||+.++ + +++++++|.+|.++.....++.-. -..|.|.++++|.+|..+++ ..|+|++|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999998875 2 257789999999998888775522 37899999999999999999 7999999999
Q ss_pred EEccCCC
Q 011893 179 KRAVPKE 185 (475)
Q Consensus 179 ~~a~~k~ 185 (475)
-++.+..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9997543
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.32 E-value=0.00052 Score=56.25 Aligned_cols=58 Identities=21% Similarity=0.348 Sum_probs=47.2
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhc
Q 011893 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~ 167 (475)
.+...+.++| .+|.++...||.++|+.||. ..|..+-|. .|||.|.+++.|..|+..+
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3445566777 99999999999999999984 345666553 7999999999999999855
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.00 E-value=0.0011 Score=54.32 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=43.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011893 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
.+.++| .+|+++..+||.++|+.||.| .|..+.|. .|||.|.+++.|..|+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al 66 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAV 66 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHH
Confidence 456667 999999999999999999954 56777763 6999999999999998
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.96 E-value=0.0029 Score=52.57 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=60.5
Q ss_pred CcEEEEcCCCCCC-c----HHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEE
Q 011893 5 LGKLFIGGISWDT-N----EDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEA 77 (475)
Q Consensus 5 ~~~LfVgnLP~d~-t----eedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V 77 (475)
.++|+|.||+.++ + .++++++|..|.++.....++.- .-..|.|.++++|.+|- ++...+.+++++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5789999999876 3 25778999999999888887752 13789999999999998 8888999999999
Q ss_pred eecCC
Q 011893 78 KKAVP 82 (475)
Q Consensus 78 ~~a~~ 82 (475)
-.+.+
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98874
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.93 E-value=0.0023 Score=52.01 Aligned_cols=67 Identities=9% Similarity=0.088 Sum_probs=52.8
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCC--ccceEEEEEecCHHHHHHHHHhcC-ceeC
Q 011893 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQ--RPRGFGFITYDSEEAVDKVLLKTF-HELN 172 (475)
Q Consensus 106 ~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg--~~kG~aFV~F~s~e~A~~Al~~~~-~~l~ 172 (475)
.||.|++||+.+||+++.+.+.....+.....+..+.+. ..-.-|+|.|.+.|++....+..+ +.|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 589999999999999999999998877766665544322 223469999999999999998877 5543
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.89 E-value=0.0032 Score=51.23 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=50.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCC--cccEEEEEEcCHHHHHHHH--HcCccc
Q 011893 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGR--ARGFGFIVFADPAVAERVV--MQKHMI 70 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~--srG~aFVeF~s~e~A~~Al--~~~~~i 70 (475)
+||.|+.||+.+||+++.+.+..+.++.....+.-+.+.+ .-.-|+|.|++.|++.... .+.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 6999999999999999999999988877666665443322 2245999999999988887 444443
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.82 E-value=0.0039 Score=53.09 Aligned_cols=73 Identities=23% Similarity=0.220 Sum_probs=59.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCC-eEEEEEEc
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG-KMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~G-r~i~V~~a 181 (475)
...+.|.|-++|... ...|.+.|++||+|++...... ...-.|+|+++.+|++||.+....|.+ -.|-|+..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 456789999999985 6678889999999998876322 338999999999999999998888874 77888875
Q ss_pred c
Q 011893 182 V 182 (475)
Q Consensus 182 ~ 182 (475)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.69 E-value=0.0066 Score=51.70 Aligned_cols=72 Identities=11% Similarity=0.193 Sum_probs=57.6
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCC-eEEEEeecC
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDG-RTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~g-r~v~V~~a~ 81 (475)
+.+-|-|-++|.. ....|.+.|++||+|++..... ...+-.|+|.++.+|++|| +|...|.+ -.|-|++..
T Consensus 23 ~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 4678889999988 4778888999999999877621 2358999999999999999 88888874 667777654
Q ss_pred C
Q 011893 82 P 82 (475)
Q Consensus 82 ~ 82 (475)
.
T Consensus 96 d 96 (119)
T 1wwh_A 96 D 96 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.65 E-value=0.0016 Score=53.48 Aligned_cols=54 Identities=19% Similarity=0.305 Sum_probs=44.9
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhc
Q 011893 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167 (475)
Q Consensus 105 ~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~ 167 (475)
.+.++| .+|.++...||.++|+.|| =..|..+-|. .|||.|.+++.|..|+..+
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 455666 9999999999999999998 3456666553 7999999999999999865
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.65 E-value=0.0017 Score=53.40 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=43.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011893 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
+.++| .+|+++..+||.++|+.||. ..|..+.|. .|||.|.+++.|..|+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al 56 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAV 56 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHH
Confidence 45666 99999999999999999983 457777763 6999999999999998
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.12 E-value=0.0064 Score=49.87 Aligned_cols=78 Identities=6% Similarity=-0.001 Sum_probs=52.4
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCc--cceEEEEEecCHHHHHHHHHhcC-ceeCCe-----E
Q 011893 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQR--PRGFGFITYDSEEAVDKVLLKTF-HELNGK-----M 175 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~--~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr-----~ 175 (475)
...||.|+.||+.+||+++.+.+...=++.....+..+.+.+ .-.-|+|.|.+.|++..-.+..+ +.|.+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 356899999999999999998887754443333322221111 11248999999999999998877 544332 4
Q ss_pred EEEEEc
Q 011893 176 VEVKRA 181 (475)
Q Consensus 176 i~V~~a 181 (475)
..|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 555655
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.86 E-value=0.0073 Score=52.19 Aligned_cols=81 Identities=16% Similarity=0.284 Sum_probs=56.0
Q ss_pred CCCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEE-EEecC--------CCC-----CcccEEEEEEcCHHHHHHHH-H
Q 011893 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAV-IMKDR--------ATG-----RARGFGFIVFADPAVAERVV-M 65 (475)
Q Consensus 1 ~e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~-i~~dk--------~tG-----~srG~aFVeF~s~e~A~~Al-~ 65 (475)
|+..+..|.|-+.|++ ....|.+.|++||.|.+-. +.+.. ... ....+-.|+|.++.+|++|| +
T Consensus 3 ~~~~e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~ 81 (132)
T 3p3d_A 3 LSNGELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE 81 (132)
T ss_dssp -----CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT
T ss_pred cccCceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh
Confidence 3456778888899866 4556778899999987722 21100 000 12467899999999999999 8
Q ss_pred cCcccCCeEEEEeecCC
Q 011893 66 QKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 66 ~~~~i~gr~v~V~~a~~ 82 (475)
+.+.|.+..|-|++..+
T Consensus 82 NG~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 82 NGAVFNGVLLGVIPYTK 98 (132)
T ss_dssp TTCEETTEECEEEECCH
T ss_pred CCeEeCcEEEEEEECCH
Confidence 99999999888887754
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.71 E-value=0.0027 Score=66.35 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=43.7
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011893 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
+..|.|||. .|.++++++|.++|++||+|.++.+.+++- -||.|||.+++++++++
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHH
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHH
Confidence 346899997 899999999999999999999988887642 59999999999999887
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.32 E-value=0.0099 Score=48.76 Aligned_cols=61 Identities=8% Similarity=0.013 Sum_probs=42.9
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCC-c-ccEEEEEEcCHHHHHHHH
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGR-A-RGFGFIVFADPAVAERVV 64 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~-s-rG~aFVeF~s~e~A~~Al 64 (475)
.+-||.|+.||+.+||+++.+.+..+-++.....+.-+.+-+ + -.-|+|.|++.|++....
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~ 70 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFR 70 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHH
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHH
Confidence 356899999999999999998888765543322222222211 1 134899999999998877
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.98 E-value=0.011 Score=61.87 Aligned_cols=58 Identities=17% Similarity=0.377 Sum_probs=43.3
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhc
Q 011893 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~ 167 (475)
..+.|+|. .|..+++.||.++|++||.|.++.+-+++ .-||.|||++.++++++++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 34789998 79999999999999999999998776543 249999999999999887553
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.42 E-value=0.05 Score=46.93 Aligned_cols=78 Identities=26% Similarity=0.367 Sum_probs=55.9
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcCceee-EEEeecC--------CCC-----ccceEEEEEecCHHHHHHHHHhcCce
Q 011893 105 TKKIFVGGLASTVTESDFKKYFDQFGIITD-VVVMYDH--------NTQ-----RPRGFGFITYDSEEAVDKVLLKTFHE 170 (475)
Q Consensus 105 ~~~LfV~nLp~~~teedL~~~F~~~G~I~~-v~I~~d~--------~tg-----~~kG~aFV~F~s~e~A~~Al~~~~~~ 170 (475)
..-|.|-+.|.+.++ .+.+.|++||.|++ +.+.++. ... .......|+|+++.+|++||.+....
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 355777788776554 56678999999877 3222100 000 12346799999999999999999999
Q ss_pred eCCeEEEEEEccC
Q 011893 171 LNGKMVEVKRAVP 183 (475)
Q Consensus 171 l~Gr~i~V~~a~~ 183 (475)
|.|..|=|+...+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999999988754
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.83 E-value=0.92 Score=47.89 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=45.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC
Q 011893 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~ 168 (475)
.+...++|+ +|..+...||+++|+.||. .+|..+.|. .|||.|.+.++|..++....
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 455666776 9999999999999999994 455554332 69999999999999998764
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.10 E-value=1.4 Score=46.49 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=42.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011893 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
...++|+ +|..+...+|.++|+.|+.| +|..+.+. .|||.|.+++.|+.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l 490 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAV 490 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHH
Confidence 4567776 99999999999999999954 55555542 6999999999999988
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=72.82 E-value=25 Score=28.01 Aligned_cols=66 Identities=11% Similarity=0.045 Sum_probs=49.0
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHcCcccCCeEEEE
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEA 77 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al~~~~~i~gr~v~V 77 (475)
+.|-|-|-|||..+-..|+.-.....|---.|+.+. |-|.|.|.+.++.+-|+......+..++.+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqi 76 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQI 76 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEE
Confidence 567889999999999999998888888544565554 459999999999999983333333444444
No 404
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=70.11 E-value=16 Score=29.70 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHH-hhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEccCC
Q 011893 112 GLASTVTESDFKKYF-DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184 (475)
Q Consensus 112 nLp~~~teedL~~~F-~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~~k 184 (475)
-++..++-+||.... +.||.-.++... +. ...|-..+.+++++||+.++..-.=+.|+|-...++
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVING 88 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEECC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccCCcccceEEEEecCC
Confidence 457788999988777 579988777766 32 367999999999999999874333344444444443
No 405
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=68.20 E-value=48 Score=27.16 Aligned_cols=134 Identities=13% Similarity=0.156 Sum_probs=84.1
Q ss_pred CCCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcC----HHHHHHHHHcCcccCCeEEE
Q 011893 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD----PAVAERVVMQKHMIDGRTVE 76 (475)
Q Consensus 1 ~e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s----~e~A~~Al~~~~~i~gr~v~ 76 (475)
|.+...+|.|.++.-.--...|+..+...-.|..+.+-... .-+.|+|.. .+...+++.+ .+..+.
T Consensus 1 ~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~----~G~~~~ 70 (149)
T 2ew9_A 1 MAPQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMA------GKAEIKYDPEVIQPLEIAQFIQD----LGFEAA 70 (149)
T ss_dssp CCCEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTT------TEEEEEECTTTCCHHHHHHHHHH----HTCEEE
T ss_pred CCcEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecC------CEEEEEEcCCCCCHHHHHHHHhc----CCCceE
Confidence 56667788899998887888899999987667666654321 346677743 3344444421 122222
Q ss_pred EeecCCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEec-
Q 011893 77 AKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYD- 155 (475)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~- 155 (475)
+..... ......+|.|.++.-..-...|++.+.+.--|..+.+-... ..+.|+|+
T Consensus 71 ~~~~~~------------------~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~ 126 (149)
T 2ew9_A 71 VMEDYA------------------GSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALAT------SKALVKFDP 126 (149)
T ss_dssp ECSCSC------------------CSSSEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTT------TEEEEECCT
T ss_pred eecccc------------------cccceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCC------CEEEEEECC
Confidence 210000 01123567888887665567889999887778777775432 26888886
Q ss_pred ---CHHHHHHHHHhcC
Q 011893 156 ---SEEAVDKVLLKTF 168 (475)
Q Consensus 156 ---s~e~A~~Al~~~~ 168 (475)
+.+++.++|+.+.
T Consensus 127 ~~~~~~~i~~~i~~~G 142 (149)
T 2ew9_A 127 EIIGPRDIIKIIEEIG 142 (149)
T ss_dssp TTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhCC
Confidence 4577788887765
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=65.18 E-value=48 Score=26.40 Aligned_cols=72 Identities=13% Similarity=0.210 Sum_probs=55.3
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC--------ceeCCeE
Q 011893 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF--------HELNGKM 175 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~--------~~l~Gr~ 175 (475)
+.+-|.|-|+|..+-..++--.....|---.|+.+. |-|.|.|.+.++...|++++- .+|.|..
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 456678899999999999888888888766676652 359999999999999998642 2678888
Q ss_pred EEEEEccC
Q 011893 176 VEVKRAVP 183 (475)
Q Consensus 176 i~V~~a~~ 183 (475)
+.|--..|
T Consensus 83 cdvistip 90 (129)
T 4eyt_A 83 CDVISTIP 90 (129)
T ss_dssp EEEECCCC
T ss_pred eeeeecCC
Confidence 77755444
No 407
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.52 E-value=23 Score=28.03 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=35.6
Q ss_pred CCCCCCcHHHHHHHHhh-cC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011893 12 GISWDTNEDRLRDYFQA-FG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 12 nLP~d~teedLke~F~~-~G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
-...+.+..+|++.++. |+ +|..|..+..+ .+.- -|+|.+...++|....
T Consensus 29 ~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~~K--KA~V~L~~~~~a~dva 80 (86)
T 3j21_T 29 IVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RGEK--KAYVKLKPEYSASEVA 80 (86)
T ss_dssp EECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TSCE--EEEEEECTTSCHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CCce--EEEEEcCCCCcHHHHH
Confidence 46788999999999988 44 56677766654 2222 4999998877776543
No 408
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=48.74 E-value=71 Score=28.60 Aligned_cols=126 Identities=10% Similarity=-0.063 Sum_probs=65.7
Q ss_pred cEEEEcCC----CCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcC---HHHHHHHH-HcCcccCCeE--E
Q 011893 6 GKLFIGGI----SWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD---PAVAERVV-MQKHMIDGRT--V 75 (475)
Q Consensus 6 ~~LfVgnL----P~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s---~e~A~~Al-~~~~~i~gr~--v 75 (475)
-.+++++| ...+.-.||+++|+..| ..+|+-.-. + |- |.|.+ +++.++.| ..-..-.+.. |
T Consensus 7 yiaLLRGINVGG~nkv~MadLr~~l~~lG-f~~V~TyI~--S----GN--vvF~s~~~~~~l~~~ie~~l~~~fg~~v~v 77 (183)
T 2hiy_A 7 YALLVRGINVGGKNKVVMAELRQELTNLG-LEKVESYIN--S----GN--IFFTSIDSKAQLVEKLETFFAVHYPFIQSF 77 (183)
T ss_dssp EEEECSSCSCC-CCCCCHHHHHHHHHHHT-CEEEEEETT--T----TE--EEEEECSCHHHHHHHHHHHHHHHCTTCCCC
T ss_pred hhhhccceecCCCCcccHHHHHHHHHHcC-CccceEEEe--c----CC--EEEecCCCHHHHHHHHHHHHHHhcCCCCCE
Confidence 35677887 45688999999999987 566665442 2 33 44433 23333333 1111112222 3
Q ss_pred EEeecCCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcC-ceeeEEEeecCCCCccceEEEE-E
Q 011893 76 EAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFG-IITDVVVMYDHNTQRPRGFGFI-T 153 (475)
Q Consensus 76 ~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G-~I~~v~I~~d~~tg~~kG~aFV-~ 153 (475)
.|... .+.......++... . ....+++|.-|+..++.++|.+.+...- ..+++.+.. ...|+ .
T Consensus 78 ~vrs~--~el~~i~~~~Pf~~----~-~~~~~~~v~F~~~~~~~~~~~~~l~~~~~~~E~~~~~~--------~~iy~~~ 142 (183)
T 2hiy_A 78 SLLSL--EDFEAELENLPAWW----S-RDLARKDFLFYTEGLDVDQVIATVESLELKDEVLYFGK--------LGIFWGK 142 (183)
T ss_dssp EEEEH--HHHHHHHTTCCGGG----G-SCCSEEEEEEECTTCCHHHHHHHHHTSCCCSEEEEECS--------SEEEEEE
T ss_pred EEecH--HHHHHHHHhCCCCc----c-CCCcEEEEEEECCCCChHHHHHHhhccCCCCeEEEEEC--------CEEEEEE
Confidence 33222 11111111111110 0 1346788888888889999877666443 335555532 25677 7
Q ss_pred ec
Q 011893 154 YD 155 (475)
Q Consensus 154 F~ 155 (475)
|.
T Consensus 143 ~~ 144 (183)
T 2hiy_A 143 FS 144 (183)
T ss_dssp CC
T ss_pred eC
Confidence 74
No 409
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=47.45 E-value=33 Score=27.59 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHH-hhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCc
Q 011893 112 GLASTVTESDFKKYF-DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFH 169 (475)
Q Consensus 112 nLp~~~teedL~~~F-~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~ 169 (475)
-++..+.-+||.+.. ..||.-.++..+.+ .-.|-..+.+++++|++.++.
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDr 85 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDR 85 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhcc
Confidence 467788999998877 56999888877633 267888999999999999874
No 410
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=45.57 E-value=74 Score=22.83 Aligned_cols=57 Identities=11% Similarity=-0.040 Sum_probs=43.8
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC
Q 011893 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (475)
Q Consensus 105 ~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~ 168 (475)
..+|.|.++.-.-=...|++.+++ --|..+.+-.. .+.+.|+|++.+++.++|+.+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 456888888877777889999988 77877777433 3467889887788888888765
No 411
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=43.86 E-value=35 Score=27.10 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=44.6
Q ss_pred CCCCCCCHHHHHHHH-hhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEc
Q 011893 112 GLASTVTESDFKKYF-DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181 (475)
Q Consensus 112 nLp~~~teedL~~~F-~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a 181 (475)
-++..+.-+||.+.. ..||...++..+.+ .-.|-..+.+++++|++.++....=+.|+|-..
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~ 81 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRILLL 81 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHSTTTTEEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCccccceEEEEE
Confidence 457778889988777 56999888877632 256888999999999999874444444444443
No 412
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=42.90 E-value=30 Score=28.20 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=43.0
Q ss_pred CCCCCCCHHHHHHHH-hhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEE
Q 011893 112 GLASTVTESDFKKYF-DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178 (475)
Q Consensus 112 nLp~~~teedL~~~F-~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V 178 (475)
-++..+.-+||++.. ..||...++..+.+ .-.|-..+.+++++|++.++....=+.|+|
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDrs~~mkSLRI 105 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRI 105 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHHCSSCCSEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhccCccccceEE
Confidence 467788899998877 56999888877632 246888999999999999874333333333
No 413
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=42.11 E-value=38 Score=25.28 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHhhcCc-----eeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011893 116 TVTESDFKKYFDQFGI-----ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 116 ~~teedL~~~F~~~G~-----I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
.++.-+|..++..-+. |-.|+|..+ |.||+-.... ++++++.+. ..++++++.|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 3566677777764433 445556432 7888886543 666777776 68899999998764
No 414
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=39.04 E-value=56 Score=30.25 Aligned_cols=114 Identities=11% Similarity=0.110 Sum_probs=58.5
Q ss_pred CCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEc---CHHHHHHHH-----HcCcc---cCCeEEEEeecC
Q 011893 13 ISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFA---DPAVAERVV-----MQKHM---IDGRTVEAKKAV 81 (475)
Q Consensus 13 LP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~---s~e~A~~Al-----~~~~~---i~gr~v~V~~a~ 81 (475)
+..++.+.+|+++|+.++++..+.++.++. -+|-.-+.+. +.+++..++ .++.. ..+..+.|..+.
T Consensus 9 ~sl~f~~~~i~~vl~~la~~~g~n~vvd~~---V~G~vtl~~~~~v~~~~~~~~l~~vL~~~gl~~~~~~g~v~~V~p~~ 85 (241)
T 3ezj_A 9 FTANFKDTDLKSFIETVGANLNKTIIMGPG---VQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSS 85 (241)
T ss_dssp BCCEEEEEEHHHHHHHHHHHHTCEEEC------CCCEEEEEESSCBCHHHHHHHHHHHHHHTTEEEEEETTTEEEEEEC-
T ss_pred EEEEeCCCCHHHHHHHHHHHhCCeEEECCC---CcceEEEEeCCCCCHHHHHHHHHHHHHHCCcEEEEcCCCEEEEEEhH
Confidence 444566677888888877777777777642 3455556664 466666554 33332 257778777654
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhc
Q 011893 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQF 129 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~ 129 (475)
.......................++.+.+.+....--...|+.++..-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~t~vi~L~~~~a~~l~~~L~~l~~~~ 133 (241)
T 3ezj_A 86 AAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSA 133 (241)
T ss_dssp ------------------CCCEEEEEEECCSSCGGGTHHHHHHHHHHH
T ss_pred HhhhcCCccccCCCCCCCCCceEEEEEEecccCHHHHHHHHHHHhCcC
Confidence 322111100000000011122345566677777776667788888765
No 415
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=36.90 E-value=33 Score=29.97 Aligned_cols=53 Identities=13% Similarity=0.266 Sum_probs=35.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhh-cC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHH
Q 011893 6 GKLFIGGISWDTNEDRLRDYFQA-FG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~-~G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~A 63 (475)
.-+|+ +..+.+..||++.++. |+ .|..|..+..+ .+.- -|||.+....+|.++
T Consensus 89 ~~vF~--Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p-~g~K--KAyV~La~~~dAldv 143 (150)
T 4a17_R 89 TMVFY--VHNRSTKPQIKSAFEKLYNVKVRSVNTLNTI-TGNK--KAYIRLAADSDSLTL 143 (150)
T ss_dssp EEEEE--ECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TSCE--EEEEEECSSSCHHHH
T ss_pred EEEEE--EcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CCcE--EEEEEcCCCCcHHHH
Confidence 33454 5678899999998887 44 56777766654 2222 399999877666554
No 416
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=35.54 E-value=1.6e+02 Score=23.04 Aligned_cols=42 Identities=10% Similarity=0.223 Sum_probs=27.8
Q ss_pred cHHHHHHHHhh----cC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011893 18 NEDRLRDYFQA----FG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 18 teedLke~F~~----~G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
.|+.+++.+++ .+ +|.+|.+.. ...||-||++...++...+|
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I 67 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASE-----SLKGYVLVEAETKGDVEELI 67 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECT-----TSTTEEEEEESSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEec-----ccCCEEEEEEecchhHHHHH
Confidence 45555555543 22 355555443 26799999999999888887
No 417
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=41.71 E-value=7.9 Score=31.89 Aligned_cols=55 Identities=13% Similarity=0.212 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEE--EEecCHHHHHHHHHhcCceeC
Q 011893 116 TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGF--ITYDSEEAVDKVLLKTFHELN 172 (475)
Q Consensus 116 ~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aF--V~F~s~e~A~~Al~~~~~~l~ 172 (475)
..++++|+++..++. +..+.|.+....++.. |.. =.|.+.++|++|++.|..+|.
T Consensus 33 ~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~~l~ 89 (106)
T 2lfv_A 33 SSNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPADVQ 89 (106)
Confidence 355677888887775 4445555433223332 332 278999999999999886554
No 418
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=35.39 E-value=62 Score=28.89 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=31.8
Q ss_pred CCHHHHHHHH--hhcCceeeEEEeecCCCCccceEEEEEecC-HHHHHHHHHh
Q 011893 117 VTESDFKKYF--DQFGIITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLLK 166 (475)
Q Consensus 117 ~teedL~~~F--~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s-~e~A~~Al~~ 166 (475)
...++|++.| ..|.++. |+.+..+. -.+|++.|+|.. -.-...|++.
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHHHH
Confidence 4457999977 8898754 65555543 478899999965 4444445443
No 419
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=34.92 E-value=33 Score=29.69 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=34.2
Q ss_pred CCCCCCcHHHHHHHHhh-cC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHH
Q 011893 12 GISWDTNEDRLRDYFQA-FG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63 (475)
Q Consensus 12 nLP~d~teedLke~F~~-~G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~A 63 (475)
-+..+.+..+|++.++. |+ +|..|..+..+ .+.- -|||.+....+|.+.
T Consensus 85 ~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g~K--KAyV~L~~~~daldv 135 (142)
T 3u5e_X 85 QVSMKANKYQIKKAVKELYEVDVLKVNTLVRP-NGTK--KAYVRLTADYDALDI 135 (142)
T ss_dssp EECTTCCHHHHHHHHHHHHSCCEEEEEEEECT-TSCE--EEEEEECTTCCHHHH
T ss_pred EEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CCce--EEEEEeCCCCcHHHH
Confidence 35678999999998887 44 56777766654 2222 399999877666554
No 420
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=33.56 E-value=71 Score=23.70 Aligned_cols=66 Identities=15% Similarity=0.257 Sum_probs=37.5
Q ss_pred EEEEcCCCC-CCcHHHHHHHHhhcCC-----eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEe
Q 011893 7 KLFIGGISW-DTNEDRLRDYFQAFGE-----VLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (475)
Q Consensus 7 ~LfVgnLP~-d~teedLke~F~~~G~-----V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~ 78 (475)
+|||.-=-. .++..+|..++..-+. |-.|+|..+ |.||+..... +++++ ++...+.++++.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEE
Confidence 566632222 2677788888876443 445666443 7899887654 44444 66677889988887
Q ss_pred ecC
Q 011893 79 KAV 81 (475)
Q Consensus 79 ~a~ 81 (475)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 653
No 421
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=32.32 E-value=61 Score=28.93 Aligned_cols=55 Identities=15% Similarity=0.121 Sum_probs=38.8
Q ss_pred EEEEcCCCC-C--------CcHHHHHHHH--hhcCCeeEEEEEecCCCCCcccEEEEEEcC-HHHHHHHH
Q 011893 7 KLFIGGISW-D--------TNEDRLRDYF--QAFGEVLEAVIMKDRATGRARGFGFIVFAD-PAVAERVV 64 (475)
Q Consensus 7 ~LfVgnLP~-d--------~teedLke~F--~~~G~V~~v~i~~dk~tG~srG~aFVeF~s-~e~A~~Al 64 (475)
.+.|-|+|. . ....+|++.| ..|.+++ |+.+..+ .-++|++.|+|.+ ..--..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHH
Confidence 567889997 2 3457899977 8998876 5555553 2478999999965 44455555
No 422
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=32.07 E-value=34 Score=29.92 Aligned_cols=49 Identities=6% Similarity=0.201 Sum_probs=34.3
Q ss_pred CCCCCcHHHHHHHHhh-cC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011893 13 ISWDTNEDRLRDYFQA-FG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 13 LP~d~teedLke~F~~-~G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
+..+.+..+|++.++. |+ .|..|..+..+ .+.- -|||.+....+|.+..
T Consensus 96 Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g~K--KAyV~L~~~~daldvA 146 (152)
T 3iz5_X 96 VDLKADKKKIKAAVKKMYDIQAKKVNTLIRP-DGKK--KAYVKLTPDYDALDVA 146 (152)
T ss_dssp ECSSCCSHHHHHHHHHHHTCCEEEEEEEECT-TSSE--EEEEEECTTSCHHHHH
T ss_pred EcCCCCHHHHHHHHHHHhCCcceEEEeeEcC-CCce--EEEEEcCCCCcHHHHH
Confidence 5678899999988887 44 56777766654 2222 4999998877766543
No 423
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.08 E-value=96 Score=24.35 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=36.7
Q ss_pred cCCCCCCCHHHHHHHHhh-cC-ceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhc
Q 011893 111 GGLASTVTESDFKKYFDQ-FG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167 (475)
Q Consensus 111 ~nLp~~~teedL~~~F~~-~G-~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~ 167 (475)
-.++...+..||++.+++ |+ .|..|..+..+. +.. -|+|++...++|.....++
T Consensus 28 F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~~K--KA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 28 FIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-GEK--KAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-SCE--EEEEEECTTSCHHHHHHHS
T ss_pred EEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-Cce--EEEEEcCCCCcHHHHHHhh
Confidence 345778999999999987 55 456666555432 222 5999998877666655443
No 424
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=29.12 E-value=54 Score=29.64 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=23.1
Q ss_pred cEEEEEEcCHHHHHHHHHcCcccCCeEEEEee
Q 011893 48 GFGFIVFADPAVAERVVMQKHMIDGRTVEAKK 79 (475)
Q Consensus 48 G~aFVeF~s~e~A~~Al~~~~~i~gr~v~V~~ 79 (475)
--.||.|+++++|.+++.....| +.|.|--
T Consensus 98 ~~v~il~k~p~d~~~lve~Gv~i--~~vNvG~ 127 (187)
T 3lfj_A 98 EKVFLLFKNIDTCKRVMDGGLPI--TTLNIGG 127 (187)
T ss_dssp EEEEEEESSHHHHHHHHHTTCCC--SEEEEEE
T ss_pred ceEEEEECCHHHHHHHHHcCCCC--CEEEECC
Confidence 45899999999999999776665 3555543
No 425
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=28.27 E-value=75 Score=24.91 Aligned_cols=52 Identities=10% Similarity=0.125 Sum_probs=35.7
Q ss_pred EEcCCCCCCcHHHHHHHHhh-cC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHH
Q 011893 9 FIGGISWDTNEDRLRDYFQA-FG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63 (475)
Q Consensus 9 fVgnLP~d~teedLke~F~~-~G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~A 63 (475)
|+=..+.+.+..||++.++. |+ +|..|..+..+ .+. --|+|.++..++|...
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~-~~~--KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM-DGE--KKAVVRLSEDDDAQEV 78 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TSS--EEEEEEECTTSCHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC-CCc--eEEEEEECCCCcHHHH
Confidence 34446789999999999987 44 56777766654 221 2489999877665443
No 426
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=28.15 E-value=88 Score=26.08 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=46.4
Q ss_pred ceeeecCCCCCCCHHH---HHHHHhhcCceeeEEEeecCCCCccceEEEEEe--cCHHHHHHHHHhcC-----------c
Q 011893 106 KKIFVGGLASTVTESD---FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITY--DSEEAVDKVLLKTF-----------H 169 (475)
Q Consensus 106 ~~LfV~nLp~~~teed---L~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F--~s~e~A~~Al~~~~-----------~ 169 (475)
-.|.|.++|..+.+|- -+.+-.+|..-+...|+ +...|.--|.| ++.|+.++||+.+- .
T Consensus 43 l~i~itgvpeqvrkelakeaerl~~efni~v~y~im-----gsgsgvm~i~f~gddlea~ekalkemirqarkfagtvty 117 (170)
T 4hhu_A 43 LVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIM-----GSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTY 117 (170)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEE-----CTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEE-----eCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEE
Confidence 3467788887766542 23344456665666666 33456777888 67889999887542 2
Q ss_pred eeCCeEEEEEEc
Q 011893 170 ELNGKMVEVKRA 181 (475)
Q Consensus 170 ~l~Gr~i~V~~a 181 (475)
.|.|..|++...
T Consensus 118 tl~gn~l~i~it 129 (170)
T 4hhu_A 118 TLSGNRLVIVIT 129 (170)
T ss_dssp EECSSEEEEEEE
T ss_pred EEeCCEEEEEEe
Confidence 677888877664
No 427
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=27.55 E-value=1.1e+02 Score=24.00 Aligned_cols=32 Identities=6% Similarity=0.237 Sum_probs=24.7
Q ss_pred eeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC
Q 011893 132 ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (475)
Q Consensus 132 I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~ 168 (475)
|.++.++. ..+||.||+++..+++..+++.+.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCT
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCC
Confidence 55555542 378999999999999999997765
No 428
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=27.11 E-value=1.6e+02 Score=20.74 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=41.7
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEec----CHHHHHHHHHhcCc
Q 011893 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYD----SEEAVDKVLLKTFH 169 (475)
Q Consensus 106 ~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~----s~e~A~~Al~~~~~ 169 (475)
.+|.|.++.-.-=...|++.+++.--|..+.+-... ..+.|+|+ +.+++.++|+....
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~Gy 65 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ------NRADVVFDPNLVKEEDIKEEIEDAGF 65 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHCCC
Confidence 457777776665567889999887778777775442 26889985 56788888887653
No 429
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=27.10 E-value=52 Score=31.31 Aligned_cols=42 Identities=19% Similarity=0.418 Sum_probs=33.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011893 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
.-+.|.|||+.++...|.++++. ..+..+.+|.. +|.|++.+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q----------------kEva~Rl~ 152 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ----------------KEVAERMT 152 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE----------------HHHHHHHT
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee----------------eeeeeecc
Confidence 46789999999999999999988 66666666554 47777766
No 430
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=26.32 E-value=2.5e+02 Score=22.86 Aligned_cols=57 Identities=14% Similarity=0.122 Sum_probs=37.0
Q ss_pred EEEcCCCCCCcHHHHHHHHhh-------cCCeeEEEEEecCCC-CCcccE---EEEEEcCHHHHHHHH
Q 011893 8 LFIGGISWDTNEDRLRDYFQA-------FGEVLEAVIMKDRAT-GRARGF---GFIVFADPAVAERVV 64 (475)
Q Consensus 8 LfVgnLP~d~teedLke~F~~-------~G~V~~v~i~~dk~t-G~srG~---aFVeF~s~e~A~~Al 64 (475)
|.+=.|..++++++++++.+. +..|+++.+-++... ++.++| ..++|++.++-+.-+
T Consensus 24 IVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~ 91 (121)
T 3bb5_A 24 LVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYA 91 (121)
T ss_dssp EEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHH
Confidence 444468888888776655533 566888887776432 444554 347889888877654
No 431
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=25.67 E-value=1.2e+02 Score=23.12 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=38.2
Q ss_pred EEEEEEcCHHHHHHHHHcCcccCC---eEEEEeecCCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHH
Q 011893 49 FGFIVFADPAVAERVVMQKHMIDG---RTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125 (475)
Q Consensus 49 ~aFVeF~s~e~A~~Al~~~~~i~g---r~v~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~ 125 (475)
|.++.|+...++.+-+.....|+. |.+.|+...+ ..-..+|| |.++++|++++.+
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~--------------------r~YE~m~I--l~P~l~ee~~~~~ 64 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTP--------------------GRYEVNIV--LNPNLDQSQLQNE 64 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSST--------------------TEEEEEEE--ECTTCCHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCC--------------------CceEEEEE--ECCCCCHHHHHHH
Confidence 789999877666666633333444 4444443222 12345676 5678999999999
Q ss_pred HhhcCc
Q 011893 126 FDQFGI 131 (475)
Q Consensus 126 F~~~G~ 131 (475)
.++|-.
T Consensus 65 vek~~~ 70 (77)
T 3zzp_A 65 KEIIQR 70 (77)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888743
No 432
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=25.59 E-value=33 Score=32.79 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=34.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011893 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
..+.|.|||+.++..-|.++++....+..+.+|.. +|.|++.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q----------------kEva~Rl~ 157 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ----------------NEVVERMV 157 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE----------------HHHHHHHT
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee----------------HHHHHHHh
Confidence 46789999999999999999987666777666664 37777766
No 433
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=25.01 E-value=2.3e+02 Score=22.22 Aligned_cols=56 Identities=5% Similarity=-0.017 Sum_probs=36.8
Q ss_pred eeecCCCCCCCHHHHHHHHh-hcCce--eeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC
Q 011893 108 IFVGGLASTVTESDFKKYFD-QFGII--TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (475)
Q Consensus 108 LfV~nLp~~~teedL~~~F~-~~G~I--~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~ 168 (475)
|.+-.+|.+++.++|.+.+. .|... ..+.|..-.+.+ -+|++.+.++++.|++...
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeG-----D~itisSd~EL~eAl~l~~ 75 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEG-----DPCTVSSQLELEEAFRLYE 75 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSS-----CCEECCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCC-----CcccccCHHHHHHHHHHHH
Confidence 44555688999999987775 34421 334443322323 3599999999999998643
No 434
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=24.28 E-value=1.3e+02 Score=21.47 Aligned_cols=54 Identities=13% Similarity=-0.007 Sum_probs=40.5
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011893 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
...+|.|.++.-.--...|++.+.+ -.|..+.+-.. .+-+.|+|.+.++..++|
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i 58 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAV 58 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHH
Confidence 4567899999888889999999999 77887777443 245778887556666666
No 435
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=23.70 E-value=1e+02 Score=27.08 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=28.2
Q ss_pred CCHHHHHHHHhhcCce---eeEEEeecCCCCccceEEEEE
Q 011893 117 VTESDFKKYFDQFGII---TDVVVMYDHNTQRPRGFGFIT 153 (475)
Q Consensus 117 ~teedL~~~F~~~G~I---~~v~I~~d~~tg~~kG~aFV~ 153 (475)
.|+++|+++-.+.|.+ +++.|..|.++++.+.++|-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 6899999999999987 455666664468887776653
No 436
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=21.67 E-value=72 Score=34.38 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=41.2
Q ss_pred cCCCCCCCHHHHHHHHh----hcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhc
Q 011893 111 GGLASTVTESDFKKYFD----QFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167 (475)
Q Consensus 111 ~nLp~~~teedL~~~F~----~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~ 167 (475)
...+.+.+--||+++|- .+|.|+++.+...+. .+.+-+++|.|.+.+++.+++..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 34555566668999993 589999987765543 334557899999999988888654
No 437
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=21.37 E-value=68 Score=31.86 Aligned_cols=22 Identities=9% Similarity=0.243 Sum_probs=19.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHhh
Q 011893 7 KLFIGGISWDTNEDRLRDYFQA 28 (475)
Q Consensus 7 ~LfVgnLP~d~teedLke~F~~ 28 (475)
.+.|+|||+.++..-|..+++.
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4799999999999999988875
No 438
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=20.94 E-value=1.4e+02 Score=23.99 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=30.0
Q ss_pred CCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHH
Q 011893 117 VTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164 (475)
Q Consensus 117 ~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al 164 (475)
.-+.+|.+.+...| |.+..|..+.+++ .=|++++.++ +...+++
T Consensus 24 ~vWPEv~~~L~~aG-i~~ysIfl~~~~~--~LF~~~E~~d-~~~~~~~ 67 (104)
T 1x8d_A 24 PIWPELEAVLKSHG-AHNYAIYLDKARN--LLFAMVEIES-EERWNAV 67 (104)
T ss_dssp TCCHHHHHHHHHTT-EEEEEEEEETTTT--EEEEEEEESC-HHHHHHG
T ss_pred hcCHHHHHHHHHcC-CeEEEEEEECCCC--eEEEEEEEcC-HHhHHhc
Confidence 34578888999998 6777777775422 3489999988 3333344
No 439
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=20.88 E-value=3e+02 Score=21.41 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=36.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHhh-------cCCeeEEEEEecCCCCCcccE---EEEEEcCHHHHHHHH
Q 011893 7 KLFIGGISWDTNEDRLRDYFQA-------FGEVLEAVIMKDRATGRARGF---GFIVFADPAVAERVV 64 (475)
Q Consensus 7 ~LfVgnLP~d~teedLke~F~~-------~G~V~~v~i~~dk~tG~srG~---aFVeF~s~e~A~~Al 64 (475)
.|++ .|..++++++++++.+. +..|+++.+=++.. .+.++| -.++|++.++-+.-.
T Consensus 8 iVlf-k~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~Y~ 73 (103)
T 2qyc_A 8 VVMM-EFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDAYQ 73 (103)
T ss_dssp EEEE-EECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHHHT
T ss_pred EEEE-EECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHHHh
Confidence 3444 57888887766555433 56788888877643 444554 347888888876543
No 440
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=20.79 E-value=1.8e+02 Score=22.72 Aligned_cols=55 Identities=9% Similarity=0.020 Sum_probs=33.2
Q ss_pred eeecCCCCCCCHHHHHHHHhh-------cCceeeEEEeecCCCCccce--E-EEEEecCHHHHHHH
Q 011893 108 IFVGGLASTVTESDFKKYFDQ-------FGIITDVVVMYDHNTQRPRG--F-GFITYDSEEAVDKV 163 (475)
Q Consensus 108 LfV~nLp~~~teedL~~~F~~-------~G~I~~v~I~~d~~tg~~kG--~-aFV~F~s~e~A~~A 163 (475)
|.+-.|...+++++++++.+. .-.|+.+.+-.+.. .+.++ + -.++|++.++.++-
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~Y 72 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDAY 72 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHHH
Confidence 333457778887766655543 44567777766543 33232 3 35689999887653
No 441
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=20.70 E-value=51 Score=19.64 Aligned_cols=12 Identities=50% Similarity=1.002 Sum_probs=10.9
Q ss_pred cHHHHHHHHhhc
Q 011893 18 NEDRLRDYFQAF 29 (475)
Q Consensus 18 teedLke~F~~~ 29 (475)
+|.||++|.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 789999999987
No 442
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=20.58 E-value=1e+02 Score=26.79 Aligned_cols=47 Identities=19% Similarity=0.428 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHhh-cCceeeEEEeec----CCCCccceEEEEEecCHHHHHH
Q 011893 115 STVTESDFKKYFDQ-FGIITDVVVMYD----HNTQRPRGFGFITYDSEEAVDK 162 (475)
Q Consensus 115 ~~~teedL~~~F~~-~G~I~~v~I~~d----~~tg~~kG~aFV~F~s~e~A~~ 162 (475)
.+++..||++.+.+ |..-.++.|+.. --.+++.|||.| |++.|.|++
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 45788888888865 654333333332 223567777765 677777665
No 443
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=20.51 E-value=16 Score=31.84 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=17.4
Q ss_pred HHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEec
Q 011893 119 ESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYD 155 (475)
Q Consensus 119 eedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~ 155 (475)
++|+.++|...|.|+.+.. .|||+||+-+
T Consensus 1 ~~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp -----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CCcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 3567778888887776532 3679999876
No 444
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=20.18 E-value=4.2e+02 Score=23.98 Aligned_cols=27 Identities=11% Similarity=-0.017 Sum_probs=23.1
Q ss_pred cceEEEEEecCHHHHHHHHHhcCceeC
Q 011893 146 PRGFGFITYDSEEAVDKVLLKTFHELN 172 (475)
Q Consensus 146 ~kG~aFV~F~s~e~A~~Al~~~~~~l~ 172 (475)
-|||-|||=.++.++++||+.+.+.+.
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 588999999999999999988875433
Done!