Query 011894
Match_columns 475
No_of_seqs 270 out of 583
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:24:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2154 Predicted nucleolar pr 100.0 7.4E-71 1.6E-75 566.6 25.3 332 17-430 159-492 (505)
2 KOG2038 CAATT-binding transcri 100.0 7.7E-49 1.7E-53 420.6 21.0 253 143-419 468-764 (988)
3 PF03914 CBF: CBF/Mak21 family 100.0 1.5E-40 3.2E-45 307.8 13.2 162 200-375 1-164 (164)
4 COG5593 Nucleic-acid-binding p 100.0 1.2E-30 2.7E-35 272.3 16.8 253 142-429 362-621 (821)
5 COG5117 NOC3 Protein involved 99.8 6E-20 1.3E-24 190.2 19.5 205 146-380 406-654 (657)
6 KOG2153 Protein involved in th 99.7 2.5E-16 5.3E-21 169.2 17.3 213 147-411 460-685 (704)
7 KOG2153 Protein involved in th 97.9 2.4E-05 5.1E-10 85.8 8.3 146 206-379 544-700 (704)
8 KOG1058 Vesicle coat complex C 66.4 55 0.0012 38.1 11.2 99 200-301 333-434 (948)
9 PF14500 MMS19_N: Dos2-interac 39.9 4.1E+02 0.0089 26.8 11.8 111 184-295 41-156 (262)
10 PF08167 RIX1: rRNA processing 37.4 86 0.0019 29.2 6.0 35 261-297 114-148 (165)
11 PF01153 Glypican: Glypican; 29.5 5E+02 0.011 29.3 11.3 78 142-235 93-175 (557)
12 PF10979 DUF2786: Protein of u 27.5 1.2E+02 0.0026 22.5 4.1 35 261-295 3-39 (43)
13 cd00183 TFIIS_I N-terminal dom 23.8 67 0.0015 26.2 2.4 23 358-380 48-70 (76)
14 PF08613 Cyclin: Cyclin; Inte 22.6 1.3E+02 0.0029 27.4 4.4 36 256-292 49-84 (149)
15 PF12717 Cnd1: non-SMC mitotic 22.1 6.4E+02 0.014 23.4 12.4 121 151-272 29-159 (178)
16 PF09068 EF-hand_2: EF hand; 21.8 1.4E+02 0.0031 26.9 4.4 65 147-211 46-125 (127)
17 PF09660 DUF2397: Protein of u 20.7 3.1E+02 0.0066 30.4 7.4 82 159-253 114-201 (486)
18 PF04499 SAPS: SIT4 phosphatas 20.3 7E+02 0.015 27.5 10.1 110 177-295 27-151 (475)
No 1
>KOG2154 consensus Predicted nucleolar protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-71 Score=566.60 Aligned_cols=332 Identities=38% Similarity=0.606 Sum_probs=289.8
Q ss_pred HHHHHhhcccccCchhhHHHHHHHHHHhhhcCCCCCCCCCCCCCCccccchhhHHHHHHHHHHHHhcCCCCCCCcccccc
Q 011894 17 TDFLASKYFKYIDVRYFTYISMEKLARSLEGKGISDDKTGSADENSESHSRASIELSLRKSYYILSKIPSMEDNNEKSEH 96 (475)
Q Consensus 17 ~~~~~~~y~~y~Dvryyt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ll~~~~~~~~~~~~~~~ 96 (475)
+..|.+. ..|+|.||.+|....+.+.++..+.+.+ + +.+..|.+.+++.++++-.. +..
T Consensus 159 it~f~e~-~~~t~k~f~~~~~~~~~~~s~~~q~~~D-------------p----~v~~~N~~~~ls~v~~p~~~---~S~ 217 (505)
T KOG2154|consen 159 ITIFLEN-VGYTDKYFKYFDITLTQVRSVVPQHPTD-------------P----PVIANNELEILSLVSLPLSV---SST 217 (505)
T ss_pred HHHHHHh-ccchhHHHHHHHHHHHHHHHhccCCCCC-------------C----chhhcchHHHhhhccCCCCc---ccH
Confidence 4444443 6789999999998888888776533211 1 47778999999999986522 122
Q ss_pred cccccCCCCCccchhhHhhhhhhcccccchhhhhccccchHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhh
Q 011894 97 EMWSGSGSSSEEGNLKEASKKSKTKVKMPKAEKSNNNALSAAIISKKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAV 176 (475)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~k~~~~~awL~~Lk~~lp~~l~k~vL~~L~k~i 176 (475)
..|...+ .++.+...+++++.|+.+|+++++..+|..+++++|.+++++|
T Consensus 218 ~~~~~~~------------------------------~p~~~~~~~~~~k~f~~~Wls~l~~~ls~~lykkil~vih~rv 267 (505)
T KOG2154|consen 218 SSYVLEP------------------------------IPKQTENEKQIRKSFQNMWLSSLNGELSLKLYKKILLVIHKRV 267 (505)
T ss_pred hhhcccc------------------------------CccccccHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHH
Confidence 2233321 1111222356799999999999999999999999999999999
Q ss_pred hccccChhhHhhHHHHhhh-cCCchHHHHHHHHHHHHHhcCCCcchHHHHHHHhhCcCccccchhHHHHHHHHHHhcCCC
Q 011894 177 IPFLSNPIMLCDFLTRSYD-IGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPL 255 (475)
Q Consensus 177 ~phl~np~ll~DFLt~~~d-~gg~isllAL~~LF~Li~~~Nld~~rFY~~LY~LLdP~l~~s~~ra~Fl~LL~~~Lks~~ 255 (475)
+||+..|..+|||||++|| .||++||+||+|||+||++||++||.||.+||+||+|++||.|||+|||+|+|.||+|+|
T Consensus 268 ip~l~~P~kl~DFLtdsyd~~~g~vslLALngLF~Lm~khNleYP~FY~KLY~Ll~Pslfh~KyRarff~L~D~FLSSTH 347 (505)
T KOG2154|consen 268 IPHLISPTKLMDFLTDSYDDIGGVVSLLALNGLFILMTKHNLEYPDFYEKLYALLNPSLFHVKYRARFFRLADLFLSSTH 347 (505)
T ss_pred hHhhcChHHHHHHHHHHHhccCCchhHHHHhHHHHHHHHcCCCCchHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCC
Q 011894 256 LPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPG 335 (475)
Q Consensus 256 Lp~~RVAAFiKRLlqlaL~aPp~~~~~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~ege~~d~~~~~~~~~~~~~ 335 (475)
||+++||||+|||+|+||.+||.+++.+|+||+||++|||+|+.|+|++...+ ..
T Consensus 348 Lpa~LvAsFlKrLaRlaL~APpeA~~~vipfI~Nll~rHp~c~~lvhr~~~~~-------------------------~~ 402 (505)
T KOG2154|consen 348 LPAYLVASFLKRLARLALEAPPEAIVIVIPFICNLLRRHPNCQPLVHRSHALS-------------------------LY 402 (505)
T ss_pred chHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHhCCchhhhhccccccc-------------------------CC
Confidence 99999999999999999999999999999999999999999999999987532 24
Q ss_pred CCCCCCCCCCCcCCCCCcchHHHHHHHhhccChHHHHHHHHhhhcccccccccccccCCCCCCcHHHHHHHHHhccCC-C
Q 011894 336 IDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVK-Q 414 (475)
Q Consensus 336 ~d~Ydp~~rDP~~snA~~SsLWEL~~L~~HyHPsVa~~A~~l~~~~~i~~k~~~y~~~dfld~sy~~lld~e~~k~~k-~ 414 (475)
.||||+++.||..++|++||||||.+||.||||+|+..|+.+.+++++ ++|+++|++|++|..++|+|++++.| .
T Consensus 403 ~Dpfd~~EtDP~ks~ALeSSLWEL~~Lq~Hy~p~Va~~A~~~~q~~~k----~ef~~ed~ld~~y~~l~d~el~~kgk~~ 478 (505)
T KOG2154|consen 403 DDPFDNDETDPKKSGALESSLWELELLQTHYHPEVAKAASFFNQSLYK----PEFGLEDGLDSKYSVLQDGELSRKGKRF 478 (505)
T ss_pred CCCCCCCCCChhhhhhHHHHHHHHHHHHHhhcHHHHHHHHHHhccCcc----ccccCcchhhhhhHHhhcchhhcccCCC
Confidence 599999999999999999999999999999999999999999999886 58999999999999999999999998 5
Q ss_pred CCcccccCCCCCCCCC
Q 011894 415 VPLAFYKTTPTSLFSD 430 (475)
Q Consensus 415 ~p~~~~~~~p~~lf~~ 430 (475)
+|+.|.+ ++++++.
T Consensus 479 p~lefe~--~t~~~g~ 492 (505)
T KOG2154|consen 479 PPLEFER--RTGLGGR 492 (505)
T ss_pred CCccccc--ccccCCc
Confidence 5555555 7899887
No 2
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=100.00 E-value=7.7e-49 Score=420.57 Aligned_cols=253 Identities=26% Similarity=0.380 Sum_probs=219.6
Q ss_pred HHHHHHHHHHHHhccCCCC-----hhhHHHHHHHhhhhhhccccChhhHhhHHHHhhhcCCchHHHHHHHHHHHHHhcCC
Q 011894 143 KMKSKFTKAWITFLRLPLP-----VDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGL 217 (475)
Q Consensus 143 ~~k~~~~~awL~~Lk~~lp-----~~l~k~vL~~L~k~i~phl~np~ll~DFLt~~~d~gg~isllAL~~LF~Li~~~Nl 217 (475)
+..+++.+|.|||+|||+| .+.+......|++ +.|.+| |+| |||||++|||++....+
T Consensus 468 e~nsrllSAlLTGvNRAfPfaq~~ddk~~~~~~tLFk--l~HssN------FNT---------sVQaLmLlfQvs~~~~~ 530 (988)
T KOG2038|consen 468 ELNSRLLSALLTGVNRAFPFAQTADDKLEEQMKTLFK--LTHSSN------FNT---------SVQALMLLFQVSKKNDY 530 (988)
T ss_pred hhhHHHHHHHHhcccccCCcccCchHHHHHHhHHHHH--HHhhcc------cch---------hHHHHHHHHHHHHhhhh
Confidence 5688999999999999987 5799999999999 999999 997 99999999999999999
Q ss_pred CcchHHHHHHH-hhCcCccccchhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCcc
Q 011894 218 EYPNFYEKLYA-LLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPS 296 (475)
Q Consensus 218 d~~rFY~~LY~-LLdP~l~~s~~ra~Fl~LL~~~Lks~~Lp~~RVAAFiKRLlqlaL~aPp~~~~~iL~lI~nLLkrhP~ 296 (475)
.++|||++||+ ||||+++.++++++|++||+++|+.|. ++.||+||||||+|||++.+|+++||+|.++++|++..|.
T Consensus 531 vSDRyY~aLY~kLLdP~l~~sSKq~m~LnLlykslK~D~-ni~RV~AFvKRlLQVa~~q~P~~i~G~l~Llsel~Karp~ 609 (988)
T KOG2038|consen 531 VSDRYYRALYRKLLDPRLMNSSKQAMFLNLLYKSLKEDI-NIQRVRAFVKRLLQVAVQQQPPFICGILFLLSELLKARPT 609 (988)
T ss_pred hHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhcCCchhHhHHHHHHHHHHhcch
Confidence 99999999999 999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCC--------CCc--------hhHHHHHH---------hhh-----h--------hcccCCCCCCCC
Q 011894 297 INCLLHREDGNETHN--------DDS--------KAEKEIVD---------AAT-----V--------ANISSIKPGIDH 338 (475)
Q Consensus 297 l~~Ll~~~~~~~~~~--------~~~--------~~ege~~d---------~~~-----~--------~~~~~~~~~~d~ 338 (475)
++.|+.+.+..+.+. ++. +.+|..++ +.. . .+. .++...++
T Consensus 610 l~~lv~~~~~~D~e~dv~~~~e~DD~deek~vd~Dke~~~vdk~~~e~~~~e~ds~s~k~E~~~~~~~d~~-~~~~~~~~ 688 (988)
T KOG2038|consen 610 LRKLVVNSEDIDPEEDVVAQMENDDVDEEKKVDLDKEGKEVDKNGVEEEVEEEDSVSEKKEDLDKKKVDPI-GARGAKTP 688 (988)
T ss_pred HHHHhhCCcccChhhhhhhhhcccccchhhhccccccceeecccccccccccccccccchhhhhhhhcccc-ccccCCCC
Confidence 999987655432211 011 11111110 000 0 000 12345579
Q ss_pred CCCCCCCCcCCCCCcchHHHHHHHhhccChHHHHHHHHhhhcccccccccccccCCCCCCcHHHHHHHHHhccCCCCCcc
Q 011894 339 FDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLA 418 (475)
Q Consensus 339 Ydp~~rDP~~snA~~SsLWEL~~L~~HyHPsVa~~A~~l~~~~~i~~k~~~y~~~dfld~sy~~lld~e~~k~~k~~p~~ 418 (475)
|||.+|||.||||..||||||..|.+||||+|+.||+.|.+|..|+ |+++|+.|||++.||||++.|.+|++.-+
T Consensus 689 YD~r~R~P~f~nAd~tslWEl~~ls~HfHPSVa~~Akall~G~~i~-----y~g~~L~dfTL~~FLDrF~yRnPK~~t~~ 763 (988)
T KOG2038|consen 689 YDPRKRNPLFCNADHTSLWELLLLSKHFHPSVATFAKALLEGEEIQ-----YGGPPLNDFTLMAFLDRFAYRNPKQVTKA 763 (988)
T ss_pred CCcccCCccccCCccchHHHHHHHhhhcCchHHHHHHHHhcCceee-----cCCCchhHHHHHHHHHHHHhcCccccccc
Confidence 9999999999999999999999999999999999999999999985 99999999999999999999999988766
Q ss_pred c
Q 011894 419 F 419 (475)
Q Consensus 419 ~ 419 (475)
.
T Consensus 764 ~ 764 (988)
T KOG2038|consen 764 R 764 (988)
T ss_pred C
Confidence 4
No 3
>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis. Other proteins containing this domain stimulate transcription from the HSP70 promoter.
Probab=100.00 E-value=1.5e-40 Score=307.82 Aligned_cols=162 Identities=41% Similarity=0.702 Sum_probs=143.2
Q ss_pred hHHHHHHHHHHHHHhcCCCcchHHHHHHHhh-CcCccccchh-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCCh
Q 011894 200 VSVMALSSLFILMTQHGLEYPNFYEKLYALL-VPSIFMAKHR-AKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPP 277 (475)
Q Consensus 200 isllAL~~LF~Li~~~Nld~~rFY~~LY~LL-dP~l~~s~~r-a~Fl~LL~~~Lks~~Lp~~RVAAFiKRLlqlaL~aPp 277 (475)
++|+||.++|+|++++|+|+++||++||++| +|..++++++ .+||++++++|+++++|..|||||||||+|+|+++||
T Consensus 1 ~~i~al~~l~~l~~~~n~d~~~FY~~LY~~L~~p~~~~~~~~~~~~l~lL~~~l~~~~~~~~rvaAFiKRLl~~sl~~~~ 80 (164)
T PF03914_consen 1 TCIQALFLLFQLLSGQNIDLDRFYRALYSLLLDPELFSSSDKSALLLNLLDKSLKSDHLPIQRVAAFIKRLLQLSLHLPP 80 (164)
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcchhhccccchHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCH
Confidence 4899999999999999999999999999966 9999998865 5599999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcchHH
Q 011894 278 SGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLW 357 (475)
Q Consensus 278 ~~~~~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~ege~~d~~~~~~~~~~~~~~d~Ydp~~rDP~~snA~~SsLW 357 (475)
++++++|.+|++|+++||.|+.|+++++...+ .+.+++++ .....++|+|+++||++|||..|+||
T Consensus 81 ~~~~~~L~~i~~ll~~~p~l~~ll~~~~~~~~--~~~~~~~~------------~~~~~~~Y~p~~~dP~~~~a~~s~lW 146 (164)
T PF03914_consen 81 SFALAILALIRKLLKRHPNLKSLLDNEEKKAD--SGSEEEDE------------EDKSEDKYDPEKRDPEFSNALASSLW 146 (164)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHhcCCccccc--cchhhccc------------ccccccccCcCCCCHhHcCCchhHHH
Confidence 99999999999999999999999988765321 01111111 12356799999999999999999999
Q ss_pred HHHHHhhccChHHHHHHH
Q 011894 358 EIDTLRHHYCPPVSRFVL 375 (475)
Q Consensus 358 EL~~L~~HyHPsVa~~A~ 375 (475)
||.+|++||||+|+.+|+
T Consensus 147 EL~lL~~H~hP~V~~~A~ 164 (164)
T PF03914_consen 147 ELNLLRNHYHPSVRQFAR 164 (164)
T ss_pred HHHHHHHCCCcHHHHHhC
Confidence 999999999999999985
No 4
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.2e-30 Score=272.34 Aligned_cols=253 Identities=23% Similarity=0.210 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHHhccCCCC-----hhhHHHHHHHhhhhhhccccChhhHhhHHHHhhhcCCchHHHHHHHHHHHHHhcC
Q 011894 142 KKMKSKFTKAWITFLRLPLP-----VDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHG 216 (475)
Q Consensus 142 ~~~k~~~~~awL~~Lk~~lp-----~~l~k~vL~~L~k~i~phl~np~ll~DFLt~~~d~gg~isllAL~~LF~Li~~~N 216 (475)
.+..+.+.++.|+|+||+.| ...++.+..+|++ +.|-.+ |+| ++|||++++|..-..-
T Consensus 362 ~eknS~~~savLtG~nRa~pfa~l~~~~~~~Hm~tlfk--ith~~~------fnt---------s~qalmli~q~~~~~~ 424 (821)
T COG5593 362 TEKNSFYGSAVLTGCNRAGPFALLFRNAVKSHMMTLFK--ITHEFL------FNT---------SEQALMLIDQEFYRFL 424 (821)
T ss_pred HhhhhHHHHHHHhcccccCchhhhhHHHHHHHHHHHHh--hhhhhh------hhH---------HHHHHHHHHHHHHHHh
Confidence 44567889999999999865 6888999999999 999988 886 9999999999999999
Q ss_pred CCcchHHHHHHH-hhCcCccccchhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcc-CChhHHHHHHHHHHHHHHhC
Q 011894 217 LEYPNFYEKLYA-LLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSIL-VPPSGALVIMALIHNLLRRH 294 (475)
Q Consensus 217 ld~~rFY~~LY~-LLdP~l~~s~~ra~Fl~LL~~~Lks~~Lp~~RVAAFiKRLlqlaL~-aPp~~~~~iL~lI~nLLkrh 294 (475)
++++|||+.||. |+||.+..+++++.+++|++++|+-+. ++.||-||+||++|+|-+ +.+++..+....+.+|-+.-
T Consensus 425 l~SdryY~~lYesl~dprls~ssKqgiylnllykSL~vd~-nV~rv~af~kr~lQv~S~w~~~p~~tg~f~~l~ql~~a~ 503 (821)
T COG5593 425 LDSDRYYTPLYESLIDPRLSESSKQGIYLNLLYKSLRVDT-NVHRVDAFRKRALQVISGWMVLPFDTGDFMSLLQLEMAC 503 (821)
T ss_pred hccchhhhhHHHHHhhhhhhcccccchhHHHHHHHHHHhc-CchHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHh
Confidence 999999999999 999999999999999999999999998 889999999999999754 45678888888899999999
Q ss_pred ccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcchHHHHHHHhhccChHHHHHH
Q 011894 295 PSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFV 374 (475)
Q Consensus 295 P~l~~Ll~~~~~~~~~~~~~~~ege~~d~~~~~~~~~~~~~~d~Ydp~~rDP~~snA~~SsLWEL~~L~~HyHPsVa~~A 374 (475)
|.++.|+.+.+-+= +.+++.+++..| .......||..+|||.++||..|||||+..+.+||||+|..+|
T Consensus 504 ~~lk~l~tn~~vd~--e~e~d~~eeq~d---------kd~krkeydgrkrdpk~anae~s~lwei~~finhfhptv~~~a 572 (821)
T COG5593 504 GDLKNLLTNTPVDY--EYESDAEEEQGD---------KDIKRKEYDGRKRDPKFANAEKSSLWEINNFINHFHPTVKTYA 572 (821)
T ss_pred HHHHHHhcCCCccc--ccccchhhhhcc---------cchhhhhccCcccCcccccccccchhhhhhhhhhcccHHHHHH
Confidence 99999998765421 111222211100 1112346999999999999999999999999999999999999
Q ss_pred HHhhhcccccccccccccCCCCCCcHHHHHHHHHhccCCCCCcccccCCCCCCCC
Q 011894 375 LSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFS 429 (475)
Q Consensus 375 ~~l~~~~~i~~k~~~y~~~dfld~sy~~lld~e~~k~~k~~p~~~~~~~p~~lf~ 429 (475)
+.+..|..+-.| -++-=||+..|||+++.|..|+-..+--..|-+-||+
T Consensus 573 ~a~v~ge~~i~k------p~l~l~tl~hfldrf~yr~~kqt~~arg~simqpl~~ 621 (821)
T COG5593 573 NAYVTGEEQIAK------PDLGLFTLSHFLDRFVYRSAKQTNTARGTSIMQPLFS 621 (821)
T ss_pred HHhhhhhhhhcC------CCcchhhHHHHHHHHHhcCcccccccccchhhhhhhc
Confidence 999998864222 2444589999999999999987766654333344454
No 5
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=99.84 E-value=6e-20 Score=190.18 Aligned_cols=205 Identities=20% Similarity=0.247 Sum_probs=173.7
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHhhhhhhccccChhhHhhHHHHhhhc---------CC---chHHHHHHHHHHHHH
Q 011894 146 SKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDI---------GG---VVSVMALSSLFILMT 213 (475)
Q Consensus 146 ~~~~~awL~~Lk~~lp~~l~k~vL~~L~k~i~phl~np~ll~DFLt~~~d~---------gg---~isllAL~~LF~Li~ 213 (475)
+..+..||.+|+. -..++++.||+||.+ +.||.||++++|||...|.. |. .-+++|+...|.|++
T Consensus 406 kiif~~Yf~vLk~-~~k~lig~vleGl~k--~~~~~n~eflGD~Levl~eL~~d~~~dk~ss~a~r~alLcI~tAF~i~S 482 (657)
T COG5117 406 KIIFRLYFMVLKG-DRKDLIGYVLEGLVK--YRKIINPEFLGDLLEVLYELLNDNPLDKISSDARRQALLCILTAFEIAS 482 (657)
T ss_pred HHHHHHHHHHHhc-chHHHHHHHHHHHHH--HHhhcCHHHHhHHHHHHHHHHcCCchhhhhHHHHHHHHHHhhHHHHHhh
Confidence 4556678888874 346799999999999 99999999999999998853 21 357889999999886
Q ss_pred h-----cCCCcchHHHHHHHhhCcCcccc--------------------------chhHHHHHHHHH-HhcCCCChHHHH
Q 011894 214 Q-----HGLEYPNFYEKLYALLVPSIFMA--------------------------KHRAKFFELLDS-CLRSPLLPAYLA 261 (475)
Q Consensus 214 ~-----~Nld~~rFY~~LY~LLdP~l~~s--------------------------~~ra~Fl~LL~~-~Lks~~Lp~~RV 261 (475)
. .|+|.+.|-..||+++.|--+.. ....+++..++. |+++......|.
T Consensus 483 ~t~ygk~n~Dl~~fVd~lY~~v~p~~l~pD~dLn~k~~RL~DP~~~~~~~~VN~tt~~e~LlK~~~~~Ffksk~~~~~r~ 562 (657)
T COG5117 483 ATLYGKENYDLGGFVDLLYSMVHPMNLEPDADLNLKIKRLKDPDAPSKPFVVNATTDNEELLKIVRLLFFKSKQPVHRRH 562 (657)
T ss_pred hhhhhhccccHHHHHHHHHHHhCcccCCcchhhhhhhhhhcCCcccccCccccccccHHHHHHHHHHHheeccCchHHHH
Confidence 4 58999999999999764421111 233567777654 778888788899
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCC
Q 011894 262 AAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDD 341 (475)
Q Consensus 262 AAFiKRLlqlaL~aPp~~~~~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~ege~~d~~~~~~~~~~~~~~d~Ydp 341 (475)
.+|-|||+-.|.+.|..+..++|.++..|+.|+|.|..|..++.+ .|.|.|+|
T Consensus 563 ~~f~krl~~c~s~~pe~~~~ail~~~~kl~~rys~~s~l~~sE~~---------------------------ig~g~~~~ 615 (657)
T COG5117 563 VIFKKRLLYCCSRSPEEFKGAILDISAKLDIRYSDCSNLKCSEFD---------------------------IGAGNVDS 615 (657)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhhhhccCccCchhh---------------------------cCCccccc
Confidence 999999999999999999999999999999999999999988765 37799999
Q ss_pred CCCCCcCCCCCcchHHHHHHHhhccChHHHHHHHHhhhc
Q 011894 342 EESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLEND 380 (475)
Q Consensus 342 ~~rDP~~snA~~SsLWEL~~L~~HyHPsVa~~A~~l~~~ 380 (475)
...||..+|.....|||-.+|.+||+|.|.+-|+.++..
T Consensus 616 ~~~nP~~SN~~tA~l~e~fLlk~hy~P~Vsq~~k~L~~~ 654 (657)
T COG5117 616 IPSNPDLSNSSTAVLFEYFLLKQHYSPAVSQSAKELLKS 654 (657)
T ss_pred CCCCcccCCchhHHHHHHHHHHhhcCHHhHHHHHHHHhh
Confidence 999999999999999999999999999999999998763
No 6
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.5e-16 Score=169.22 Aligned_cols=213 Identities=18% Similarity=0.204 Sum_probs=167.0
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHhhhhhhccccChhhHhhHHHHhhhc------CCchHHHHHHHHHHHHHh----cC
Q 011894 147 KFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDI------GGVVSVMALSSLFILMTQ----HG 216 (475)
Q Consensus 147 ~~~~awL~~Lk~~lp~~l~k~vL~~L~k~i~phl~np~ll~DFLt~~~d~------gg~isllAL~~LF~Li~~----~N 216 (475)
..+.+|+.+|+...-. ++..+|+||++ +.|++|++++.|++...-.+ +..-+++|++++|.|++. .|
T Consensus 460 iVFtiYFrILkn~~~t-ll~~vlEGlak--f~h~invef~~dll~vlk~ll~d~~~~~re~l~cvqtaf~IlS~qg~~ln 536 (704)
T KOG2153|consen 460 IVFTIYFRILKNDRYT-LLGAVLEGLAK--FAHLINVEFLGDLLKVLKELLEDIELSYREALLCVQTAFCILSGQGEKLN 536 (704)
T ss_pred HHHHHHHHHHhcchhh-HHHHHHhhHHH--HhhhccHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccceeec
Confidence 4455899999876555 99999999999 99999999999998755432 345789999999999976 58
Q ss_pred CCcchHHHHHHHhhCcCccccch--hHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHh
Q 011894 217 LEYPNFYEKLYALLVPSIFMAKH--RAKFFELLDSCL-RSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRR 293 (475)
Q Consensus 217 ld~~rFY~~LY~LLdP~l~~s~~--ra~Fl~LL~~~L-ks~~Lp~~RVAAFiKRLlqlaL~aPp~~~~~iL~lI~nLLkr 293 (475)
+|+.+||..||+++-|--....+ -.+.++++|..+ ++.. |..+|.+|++||+..+++.-+...+ .+...+..
T Consensus 537 iD~~~fv~~lY~~l~~~~~~~~~~~~~~ilr~~d~~~~k~r~-~v~~~~~~~~~Ll~~~~h~~~~s~~----~s~~~~~~ 611 (704)
T KOG2153|consen 537 IDLGKFVDHLYKMLFPMNLGPDDDGFAIILRLLDPLLIKIRK-PVVNVITKMERLLKCSLHVFFNSKL----ISKYRDIE 611 (704)
T ss_pred cCHHHHHHHHHHHhcccccCCCcchHHHHHHHhhHhhhhhhh-hHHHHHHHHHHHHHHHHHHhhcccc----hHHHHHHH
Confidence 89999999999987664333222 357899999875 5666 8888999999999999998765554 45566666
Q ss_pred CccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcchHHHHHHHhhccChHHHHH
Q 011894 294 HPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRF 373 (475)
Q Consensus 294 hP~l~~Ll~~~~~~~~~~~~~~~ege~~d~~~~~~~~~~~~~~d~Ydp~~rDP~~snA~~SsLWEL~~L~~HyHPsVa~~ 373 (475)
.+.|..|+.++ -|++|++....|||+.+++ |||.|+.+
T Consensus 612 fsk~~~~~~~~----------------------------------------~pe~~s~a~~al~e~~l~r--y~~~~~~~ 649 (704)
T KOG2153|consen 612 FSKRLNLLDSE----------------------------------------TPEYCSIASLALFEKLLLR--YHPISRLM 649 (704)
T ss_pred hhhhhhhhhcc----------------------------------------CccccccccHHHHHHHHHh--cchHHHHH
Confidence 77776665432 1899999999999999999 99999999
Q ss_pred HHHhhhcccccccccccccCCCCCCcHHHHHHHHHhcc
Q 011894 374 VLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRR 411 (475)
Q Consensus 374 A~~l~~~~~i~~k~~~y~~~dfld~sy~~lld~e~~k~ 411 (475)
|..+.-|.+.- +..-.--++...|.+.+|+..+-+.
T Consensus 650 a~~~~~G~~~~--~~~a~~p~~s~~sa~~L~~~~~~~~ 685 (704)
T KOG2153|consen 650 ASEIAIGVGAT--GEGALPPELSNLSAAELFEQDLLEM 685 (704)
T ss_pred HHHHhhcCCcc--CcCCCCccccCchHHHHhhhHHHHh
Confidence 99998888752 1222233456678999999988766
No 7
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=2.4e-05 Score=85.75 Aligned_cols=146 Identities=25% Similarity=0.321 Sum_probs=108.7
Q ss_pred HHHHHHHHhcCCC--cchHHHHHHHhhCcCccccc--------hhHHHHHHH-HHHhcCCCChHHHHHHHHHHHHHHhcc
Q 011894 206 SSLFILMTQHGLE--YPNFYEKLYALLVPSIFMAK--------HRAKFFELL-DSCLRSPLLPAYLAAAFVKKLSRLSIL 274 (475)
Q Consensus 206 ~~LF~Li~~~Nld--~~rFY~~LY~LLdP~l~~s~--------~ra~Fl~LL-~~~Lks~~Lp~~RVAAFiKRLlqlaL~ 274 (475)
.++|-++-..|++ -+.||.-| +++||.+...+ .+-+++.+. ..+..+.....+|..+|-||+.-++.+
T Consensus 544 ~~lY~~l~~~~~~~~~~~~~~il-r~~d~~~~k~r~~v~~~~~~~~~Ll~~~~h~~~~s~~~s~~~~~~fsk~~~~~~~~ 622 (704)
T KOG2153|consen 544 DHLYKMLFPMNLGPDDDGFAIIL-RLLDPLLIKIRKPVVNVITKMERLLKCSLHVFFNSKLISKYRDIEFSKRLNLLDSE 622 (704)
T ss_pred HHHHHHhcccccCCCcchHHHHH-HHhhHhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHhhhhhhhhhcc
Confidence 3455555544443 44555443 45665432211 122333322 344467778999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhCccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcc
Q 011894 275 VPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRS 354 (475)
Q Consensus 275 aPp~~~~~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~ege~~d~~~~~~~~~~~~~~d~Ydp~~rDP~~snA~~S 354 (475)
.|.....+.++|+-.+|-|++.+-.++..+.. .|.+.|.+...+|+.+|...+
T Consensus 623 ~pe~~s~a~~al~e~~l~ry~~~~~~~a~~~~---------------------------~G~~~~~~~a~~p~~s~~sa~ 675 (704)
T KOG2153|consen 623 TPEYCSIASLALFEKLLLRYHPISRLMASEIA---------------------------IGVGATGEGALPPELSNLSAA 675 (704)
T ss_pred CccccccccHHHHHHHHHhcchHHHHHHHHHh---------------------------hcCCccCcCCCCccccCchHH
Confidence 99999999999999999998887777765543 377899999999999999999
Q ss_pred hHHHHHHHhhccChHHHHHHHHhhh
Q 011894 355 SLWEIDTLRHHYCPPVSRFVLSLEN 379 (475)
Q Consensus 355 sLWEL~~L~~HyHPsVa~~A~~l~~ 379 (475)
.|||-.+|+.||+|+|..-++.+..
T Consensus 676 ~L~~~~~~~~~~~P~v~~~~kql~~ 700 (704)
T KOG2153|consen 676 ELFEQDLLEMHYNPTVPLSLKQLYK 700 (704)
T ss_pred HHhhhHHHHhccCCCCCchHHHHHH
Confidence 9999999999999999887776654
No 8
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.36 E-value=55 Score=38.08 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHhcCCC-cchHHHHHHH-hhCc-CccccchhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCC
Q 011894 200 VSVMALSSLFILMTQHGLE-YPNFYEKLYA-LLVP-SIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVP 276 (475)
Q Consensus 200 isllAL~~LF~Li~~~Nld-~~rFY~~LY~-LLdP-~l~~s~~ra~Fl~LL~~~Lks~~Lp~~RVAAFiKRLlqlaL~aP 276 (475)
+.=-||...+.|++.||++ --.|..+=.. --+- .--.-+||..+.+-+..|-. ..|. ..+.-|-=|+-.---..
T Consensus 333 vr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav--~Fp~-~aatvV~~ll~fisD~N 409 (948)
T KOG1058|consen 333 VRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAV--KFPE-VAATVVSLLLDFISDSN 409 (948)
T ss_pred HHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh--cChH-HHHHHHHHHHHHhccCC
Confidence 4445666667777666653 2233332221 1111 01112445544444444311 1122 12233333333333355
Q ss_pred hhHHHHHHHHHHHHHHhCccccccc
Q 011894 277 PSGALVIMALIHNLLRRHPSINCLL 301 (475)
Q Consensus 277 p~~~~~iL~lI~nLLkrhP~l~~Ll 301 (475)
+..+..+|.||++.+.+.|+++..|
T Consensus 410 ~~aas~vl~FvrE~iek~p~Lr~~i 434 (948)
T KOG1058|consen 410 EAAASDVLMFVREAIEKFPNLRASI 434 (948)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHH
Confidence 7788899999999999999887664
No 9
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=39.90 E-value=4.1e+02 Score=26.82 Aligned_cols=111 Identities=20% Similarity=0.234 Sum_probs=76.2
Q ss_pred hhHhhHHHHhhhcCCchHHHHHHHHHHHHHhcCCCcc---hHHHHHHHhhCcCccccchhHHHHHHHHHHhcCCCCh-HH
Q 011894 184 IMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYP---NFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLP-AY 259 (475)
Q Consensus 184 ~ll~DFLt~~~d~gg~isllAL~~LF~Li~~~Nld~~---rFY~~LY~LLdP~l~~s~~ra~Fl~LL~~~Lks~~Lp-~~ 259 (475)
..|.+|+.+.++-.. ...-||.|+..|+...+.... ..-+.++.-.++.....+.|-..++++...+..-.-. ..
T Consensus 41 ~~L~~F~~~rl~D~~-~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~ 119 (262)
T PF14500_consen 41 QVLLDFFCSRLDDHA-CVQPALKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS 119 (262)
T ss_pred HHHHHHHHHHhccHh-hHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 345568877664222 233458888888866665443 4556666666777777888999999998888652101 12
Q ss_pred HHHHHHHHHHHHhcc-CChhHHHHHHHHHHHHHHhCc
Q 011894 260 LAAAFVKKLSRLSIL-VPPSGALVIMALIHNLLRRHP 295 (475)
Q Consensus 260 RVAAFiKRLlqlaL~-aPp~~~~~iL~lI~nLLkrhP 295 (475)
.-..|++.+++++=. --|-..+.+.-++..+++..+
T Consensus 120 ~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 120 MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 245899999997755 358788888888888888888
No 10
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=37.44 E-value=86 Score=29.20 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccc
Q 011894 261 AAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSI 297 (475)
Q Consensus 261 VAAFiKRLlqlaL~aPp~~~~~iL~lI~nLLkrhP~l 297 (475)
+.+|+.=|+++.-- +.....++..+..++++||++
T Consensus 114 l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 114 LPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred HHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence 34444444443321 467778899999999999964
No 11
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=29.49 E-value=5e+02 Score=29.28 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhhccc--cChhhHhhHHHHhh--hcCCchHHH-HHHHHHHHHHhcC
Q 011894 142 KKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFL--SNPIMLCDFLTRSY--DIGGVVSVM-ALSSLFILMTQHG 216 (475)
Q Consensus 142 ~~~k~~~~~awL~~Lk~~lp~~l~k~vL~~L~k~i~phl--~np~ll~DFLt~~~--d~gg~isll-AL~~LF~Li~~~N 216 (475)
...-++|+..+...|+. -+..|..|+..+...| .|-.++.||++++- -.|+.+.|. +|+-.|
T Consensus 93 ~~~~~~F~~~f~~ll~~------se~~~~~~F~~~Y~~ly~~~~~~~~~lf~~l~~y~~g~~~~l~~~l~~Ff------- 159 (557)
T PF01153_consen 93 STRARKFDEFFRELLRQ------SENSLHSMFSRTYGSLYPQNRPIFQDLFTDLRRYYLGSNVNLEEALNEFF------- 159 (557)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHTTHHHHCTHHHHHHHHHHHHHHHCCS-S-HHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHH-------
Confidence 34455677777777764 2345555555555555 36678888888754 357666553 222222
Q ss_pred CCcchHHHHHHHhhCcCcc
Q 011894 217 LEYPNFYEKLYALLVPSIF 235 (475)
Q Consensus 217 ld~~rFY~~LY~LLdP~l~ 235 (475)
++.|.++|.+++|..-
T Consensus 160 ---~~Lf~~~f~llnp~~~ 175 (557)
T PF01153_consen 160 ---DRLFPRVFRLLNPQYQ 175 (557)
T ss_dssp ---HHHHHHHHHHHTTTSB
T ss_pred ---HHHHHHHHHHhccCcC
Confidence 3345555667787763
No 12
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=27.46 E-value=1.2e+02 Score=22.46 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcc--CChhHHHHHHHHHHHHHHhCc
Q 011894 261 AAAFVKKLSRLSIL--VPPSGALVIMALIHNLLRRHP 295 (475)
Q Consensus 261 VAAFiKRLlqlaL~--aPp~~~~~iL~lI~nLLkrhP 295 (475)
+..=|++|+.++=. .+++-+-..+.-...|+.+|-
T Consensus 3 il~kI~kLLalA~~~~~~~~EA~~A~~kAq~Lm~ky~ 39 (43)
T PF10979_consen 3 ILEKIRKLLALAESTGSNEHEAEAALAKAQRLMAKYG 39 (43)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 44558999999977 777788899999999999884
No 13
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=23.80 E-value=67 Score=26.18 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.0
Q ss_pred HHHHHhhccChHHHHHHHHhhhc
Q 011894 358 EIDTLRHHYCPPVSRFVLSLEND 380 (475)
Q Consensus 358 EL~~L~~HyHPsVa~~A~~l~~~ 380 (475)
-+..|++|..|.|+.+|+.|...
T Consensus 48 ~V~~Lrkh~~~~i~~~A~~Lv~~ 70 (76)
T cd00183 48 KVNSLRKHSNEKIRKLAKALIKS 70 (76)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHH
Confidence 37789999999999999998764
No 14
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=22.56 E-value=1.3e+02 Score=27.36 Aligned_cols=36 Identities=11% Similarity=0.358 Sum_probs=25.7
Q ss_pred ChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 011894 256 LPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLR 292 (475)
Q Consensus 256 Lp~~RVAAFiKRLlqlaL~aPp~~~~~iL~lI~nLLk 292 (475)
+|.--+..|++|+.+-+ ++++...+.+|..|..|.+
T Consensus 49 ~p~i~i~~fl~ri~~~~-~~s~~~~i~aliYl~Rl~~ 84 (149)
T PF08613_consen 49 VPSISIRDFLSRILKYT-QCSPECLILALIYLDRLRQ 84 (149)
T ss_dssp --SS-HHHHHHHHHHHT-T--HHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHH
Confidence 46666999999999987 4566677777888888888
No 15
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=22.07 E-value=6.4e+02 Score=23.39 Aligned_cols=121 Identities=16% Similarity=0.136 Sum_probs=73.4
Q ss_pred HHHHhccCCCChhhHHHHHHHhhhhhhcccc--ChhhHhhHHHHhhhcCCchHHHHHHHHHHHHHh--cCCCcchHHHHH
Q 011894 151 AWITFLRLPLPVDIYKEVLVTLHRAVIPFLS--NPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQ--HGLEYPNFYEKL 226 (475)
Q Consensus 151 awL~~Lk~~lp~~l~k~vL~~L~k~i~phl~--np~ll~DFLt~~~d~gg~isllAL~~LF~Li~~--~Nld~~rFY~~L 226 (475)
.....|+. -...+.+..|..|.+-|.-.+. ++.++..|+.-.-|....++-.|...+..+... -|..+..|..-+
T Consensus 29 ~l~~~L~D-~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i 107 (178)
T PF12717_consen 29 NLYKCLRD-EDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELI 107 (178)
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 33444543 3567888888888876666664 455667888777677777888888888888877 344455555555
Q ss_pred HHhhCcCc------cccchhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 011894 227 YALLVPSI------FMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLS 272 (475)
Q Consensus 227 Y~LLdP~l------~~s~~ra~Fl~LL~~~Lks~~Lp~~RVAAFiKRLlqla 272 (475)
+.+-.+.- .+...+..+++.+..+++.+......+.-.+.|++...
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~~~ 159 (178)
T PF12717_consen 108 SSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLNAV 159 (178)
T ss_pred HHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHc
Confidence 55444321 22334455566666666633324555555555555544
No 16
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=21.84 E-value=1.4e+02 Score=26.90 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=36.6
Q ss_pred HHHHHHHHhc-cCCCChhhHHHHHHHhhhhh---hccccC---------hhhHhhHHHHhhhcC--CchHHHHHHHHHHH
Q 011894 147 KFTKAWITFL-RLPLPVDIYKEVLVTLHRAV---IPFLSN---------PIMLCDFLTRSYDIG--GVVSVMALSSLFIL 211 (475)
Q Consensus 147 ~~~~awL~~L-k~~lp~~l~k~vL~~L~k~i---~phl~n---------p~ll~DFLt~~~d~g--g~isllAL~~LF~L 211 (475)
.|..-.+... -..++...+..+|..++..+ .|++.+ ..++..||...||.+ |.++++++...+.+
T Consensus 46 ~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 46 AFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 4444444444 23355566666666666111 466554 357888999999976 67888877665544
No 17
>PF09660 DUF2397: Protein of unknown function (DUF2397); InterPro: IPR013493 Proteins in this family are encoded within a conserved gene four-gene neighbourhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1)) and Ralstonia solanacearum (Betaproteobacteria).
Probab=20.67 E-value=3.1e+02 Score=30.36 Aligned_cols=82 Identities=15% Similarity=0.238 Sum_probs=52.2
Q ss_pred CCChhhHHHHHHHhhhhhhccccChhhHhhHHHHhhhcCC-chHHHHHHHHHHHHHhcCCCcchHHHHHHHhhCc-----
Q 011894 159 PLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGG-VVSVMALSSLFILMTQHGLEYPNFYEKLYALLVP----- 232 (475)
Q Consensus 159 ~lp~~l~k~vL~~L~k~i~phl~np~ll~DFLt~~~d~gg-~isllAL~~LF~Li~~~Nld~~rFY~~LY~LLdP----- 232 (475)
.|+..++..++..|-+ +..+.. +- ..+. ...-..+..||.-....+-.+.+||..|++.+..
T Consensus 114 sL~~~~l~~I~~~L~~--L~~~~~---------~~-~~~d~~~~~~~w~~L~~~f~~L~~na~df~~~L~~~~~~~~~~~ 181 (486)
T PF09660_consen 114 SLQRTLLERILERLRA--LAELAE---------SP-REGDAAEVYEWWRDLFEDFERLAQNAQDFYASLQSVKAEEDMDT 181 (486)
T ss_pred ccchhHHHHHHHHHHH--HHHHHh---------cc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCh
Confidence 4788889999888887 555441 00 0111 1233455666666677777899999999996643
Q ss_pred CccccchhHHHHHHHHHHhcC
Q 011894 233 SIFMAKHRAKFFELLDSCLRS 253 (475)
Q Consensus 233 ~l~~s~~ra~Fl~LL~~~Lks 253 (475)
+.|. .|+..|+.-|..|+..
T Consensus 182 e~Fl-~yKd~Li~YL~~Fv~~ 201 (486)
T PF09660_consen 182 EAFL-AYKDALIDYLRRFVQD 201 (486)
T ss_pred hHHH-HHHHHHHHHHHHHHHH
Confidence 3333 3566677777776654
No 18
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=20.34 E-value=7e+02 Score=27.55 Aligned_cols=110 Identities=18% Similarity=0.258 Sum_probs=63.0
Q ss_pred hccccChhhHhhHHHHhhhcCCchHHHHHHHHHHHHHhcCCCcchHHHHHHHhhCcCccccc--hhHHHHHHHHHHhcCC
Q 011894 177 IPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAK--HRAKFFELLDSCLRSP 254 (475)
Q Consensus 177 ~phl~np~ll~DFLt~~~d~gg~isllAL~~LF~Li~~~Nld~~rFY~~LY~LLdP~l~~s~--~ra~Fl~LL~~~Lks~ 254 (475)
+-|+.+| .+||||-.+..... ...=.++.+.+.. .++-.+|.++|+|..-... .-+.||.-+-+.-...
T Consensus 27 lkHI~~~-~ImDlLLklIs~d~---~~~~~~ilewL~~-----q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~ 97 (475)
T PF04499_consen 27 LKHIDTP-AIMDLLLKLISTDK---PESPTGILEWLAE-----QNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNA 97 (475)
T ss_pred HHhcCCc-HHHHHHHHHHccCc---ccchHHHHHHHHH-----hCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 4487765 47899876554321 0111133444433 5677888888887654332 2345555333222211
Q ss_pred C-------ChHHH-----HHHHHHHHHHHhcc-CChhHHHHHHHHHHHHHHhCc
Q 011894 255 L-------LPAYL-----AAAFVKKLSRLSIL-VPPSGALVIMALIHNLLRRHP 295 (475)
Q Consensus 255 ~-------Lp~~R-----VAAFiKRLlqlaL~-aPp~~~~~iL~lI~nLLkrhP 295 (475)
. -|..+ -..+|.+|+..+|. ..-+.++.++.++-+|+++..
T Consensus 98 ~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknn 151 (475)
T PF04499_consen 98 PQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNN 151 (475)
T ss_pred ccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcc
Confidence 1 12222 24689999999995 336677788888999996653
Done!