Query 011894
Match_columns 475
No_of_seqs 270 out of 583
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 17:29:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3grl_A General vesicular trans 30.7 96 0.0033 34.0 7.5 139 148-296 61-245 (651)
2 1zoq_C CREB-binding protein, i 24.8 90 0.0031 22.6 4.0 33 152-191 6-38 (47)
3 3dad_A FH1/FH2 domain-containi 23.7 2.2E+02 0.0075 28.7 8.2 139 151-295 122-289 (339)
4 2pmi_B PHO85 cyclin PHO80, ami 17.9 95 0.0032 30.8 4.0 43 254-297 70-112 (293)
5 4gof_A Small glutamine-rich te 17.8 60 0.002 24.1 1.9 27 185-211 8-43 (52)
6 3hts_B Heat shock transcriptio 17.7 1.4E+02 0.0049 24.8 4.5 47 218-269 11-71 (102)
7 3odn_A Dally-like protein; alp 13.9 5E+02 0.017 27.5 8.5 55 143-203 79-137 (506)
8 3si5_X Protein CASC5; BUBR1-bl 13.8 59 0.002 20.4 0.8 8 262-269 14-21 (24)
9 2ldu_A Heat shock factor prote 13.7 3E+02 0.01 23.4 5.7 49 216-269 14-76 (125)
10 1w9c_A CRM1 protein, exportin 11.8 1E+03 0.036 23.4 10.0 55 199-253 182-249 (321)
No 1
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=30.69 E-value=96 Score=34.05 Aligned_cols=139 Identities=21% Similarity=0.156 Sum_probs=77.0
Q ss_pred HHHHHHHhccCC-CChhhHHHHHHHhhhhhhccccCh----------hhHhhHHHHhhhcCCchHHHHHHHHHHHHHhcC
Q 011894 148 FTKAWITFLRLP-LPVDIYKEVLVTLHRAVIPFLSNP----------IMLCDFLTRSYDIGGVVSVMALSSLFILMTQHG 216 (475)
Q Consensus 148 ~~~awL~~Lk~~-lp~~l~k~vL~~L~k~i~phl~np----------~ll~DFLt~~~d~gg~isllAL~~LF~Li~~~N 216 (475)
-...++..|++. -..++.+.+|++|.- ++.--.++ .-++.+++|.+=.. --.+..|+.++
T Consensus 61 ~l~~li~~L~~d~~D~e~v~~~LetL~~-l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~----~~~i~~Ll~lL---- 131 (651)
T 3grl_A 61 AMEHLIHVLQTDRSDSEIIGYALDTLYN-IISNDEEEEVEENSTRQSEDLGSQFTEIFIKQ----QENVTLLLSLL---- 131 (651)
T ss_dssp THHHHHHHHHSCTTCHHHHHHHHHHHHH-HHCCC--------------CHHHHHHHHHHHS----THHHHHHHHHT----
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHH-HhCCCCcccccccccccchHHHHHHHHHHHcC----CccHHHHHHHh----
Confidence 345678888765 567999999999975 23222111 12334444433110 01233344443
Q ss_pred CCcchHHHHHHH--hhC------cC-----cccc------------chhHHHHH---HHHHHhcCCCChHHHHHHH---H
Q 011894 217 LEYPNFYEKLYA--LLV------PS-----IFMA------------KHRAKFFE---LLDSCLRSPLLPAYLAAAF---V 265 (475)
Q Consensus 217 ld~~rFY~~LY~--LLd------P~-----l~~s------------~~ra~Fl~---LL~~~Lks~~Lp~~RVAAF---i 265 (475)
+.++||.++|+ +|. |. ++.+ ..|..+-+ ++-..|..++-..+-+.|| +
T Consensus 132 -~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaF 210 (651)
T 3grl_A 132 -EEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAF 210 (651)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred -cCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccH
Confidence 45889999998 442 11 1101 01111111 2233445555578889999 8
Q ss_pred HHHHHHhccCCh--hH--HHHHHHHHHHHHHhCcc
Q 011894 266 KKLSRLSILVPP--SG--ALVIMALIHNLLRRHPS 296 (475)
Q Consensus 266 KRLlqlaL~aPp--~~--~~~iL~lI~nLLkrhP~ 296 (475)
-||..+--.-.. ++ +--||.++.||++-+|.
T Consensus 211 e~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s 245 (651)
T 3grl_A 211 ERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS 245 (651)
T ss_dssp HHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH
Confidence 999988754332 22 23689999999988753
No 2
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=24.83 E-value=90 Score=22.62 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=28.2
Q ss_pred HHHhccCCCChhhHHHHHHHhhhhhhccccChhhHhhHHH
Q 011894 152 WITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLT 191 (475)
Q Consensus 152 wL~~Lk~~lp~~l~k~vL~~L~k~i~phl~np~ll~DFLt 191 (475)
.+.-||.+-++..-..||.+|.. ||.+++-|+.
T Consensus 6 Ll~tlksp~sp~qqqqvl~ILks-------nPqLMAAfIk 38 (47)
T 1zoq_C 6 LLRTLKSPSSPQQQQQVLNILKS-------NPQLMAAFIK 38 (47)
T ss_dssp HHHTCCSCCCHHHHHHHHHHHHT-------CHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHc-------CHHHHHHHHH
Confidence 56778888888888899999986 9999999975
No 3
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=23.74 E-value=2.2e+02 Score=28.73 Aligned_cols=139 Identities=17% Similarity=0.126 Sum_probs=73.5
Q ss_pred HHHHhccCCCChhhHHHHHHHhhhhhhccccChhhHhhHHHH-----hhhc----CCchHHHHHHHHHHHHHh---c-CC
Q 011894 151 AWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTR-----SYDI----GGVVSVMALSSLFILMTQ---H-GL 217 (475)
Q Consensus 151 awL~~Lk~~lp~~l~k~vL~~L~k~i~phl~np~ll~DFLt~-----~~d~----gg~isllAL~~LF~Li~~---~-Nl 217 (475)
.|+..|. .-..+-.+.+|-.|.+ +|- .++.+.-.|+.. +.++ .|.+--.+|..+-+||.. . ++
T Consensus 122 ~iiekL~-~~~~~~lr~aLfsLk~-~~q--~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 122 AILEKLY-SSSGPELRRSLFSLKQ-IFQ--EDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHH-HCCHHHHHHHHHHHHH-HHH--TCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHh-cCCcHHHHHHHHHHHH-Hhh--cchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch
Confidence 3445554 2345567777777775 111 455555555531 1121 123444566666666642 1 22
Q ss_pred -CcchHHHHHHHhhCcCccccchhHHHHHHHHHHhcCCCChHHHHHHHHH------------HHHHHhc---cCChhHHH
Q 011894 218 -EYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVK------------KLSRLSI---LVPPSGAL 281 (475)
Q Consensus 218 -d~~rFY~~LY~LLdP~l~~s~~ra~Fl~LL~~~Lks~~Lp~~RVAAFiK------------RLlqlaL---~aPp~~~~ 281 (475)
..+.|-++||+++++..-..-++ =+.||..+...+.-....|..=|+ +|..+-- .+.+...+
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~--AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~ 275 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKT--ALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV 275 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHH--HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHH--HHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence 26899999999998422112222 366666665443223334433333 3333322 34556666
Q ss_pred HHHHHHHHHHHhCc
Q 011894 282 VIMALIHNLLRRHP 295 (475)
Q Consensus 282 ~iL~lI~nLLkrhP 295 (475)
-++.+|..+|..-|
T Consensus 276 ~amtLIN~lL~~ap 289 (339)
T 3dad_A 276 YTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhcCC
Confidence 77888888877554
No 4
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=17.90 E-value=95 Score=30.78 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccc
Q 011894 254 PLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSI 297 (475)
Q Consensus 254 ~~Lp~~RVAAFiKRLlqlaL~aPp~~~~~iL~lI~nLLkrhP~l 297 (475)
...|.--+..|++||.+-|- +++...+++|..|..|..++|..
T Consensus 70 ~~~P~ISI~~Yl~RI~k~t~-ls~~~ll~ALvYLdRL~~~~p~~ 112 (293)
T 2pmi_B 70 KIPPNISIFNYFIRLTKFSS-LEHCVLMTSLYYIDLLQTVYPDF 112 (293)
T ss_dssp SSCCSSCHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhhCCCC
Confidence 34566678899999999775 45667777788888999888864
No 5
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=17.76 E-value=60 Score=24.14 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=20.7
Q ss_pred hHhhHHHHhhhcCC---------chHHHHHHHHHHH
Q 011894 185 MLCDFLTRSYDIGG---------VVSVMALSSLFIL 211 (475)
Q Consensus 185 ll~DFLt~~~d~gg---------~isllAL~~LF~L 211 (475)
.+.|||..+.+.|. -++++||...|.+
T Consensus 8 sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v 43 (52)
T 4gof_A 8 AIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGV 43 (52)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCC
Confidence 46789988887663 2789999988865
No 6
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=17.67 E-value=1.4e+02 Score=24.82 Aligned_cols=47 Identities=26% Similarity=0.511 Sum_probs=28.3
Q ss_pred CcchHHHHHHHhh-CcCc---c---------ccchhHHHHH-HHHHHhcCCCChHHHHHHHHHHHH
Q 011894 218 EYPNFYEKLYALL-VPSI---F---------MAKHRAKFFE-LLDSCLRSPLLPAYLAAAFVKKLS 269 (475)
Q Consensus 218 d~~rFY~~LY~LL-dP~l---~---------~s~~ra~Fl~-LL~~~Lks~~Lp~~RVAAFiKRLl 269 (475)
..|.|..+||.|| ||.. . .......|-+ +|-++.+... .++|+..|=
T Consensus 11 ~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~n-----fsSFvRQLN 71 (102)
T 3hts_B 11 ARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSN-----FASFVRQLN 71 (102)
T ss_dssp CSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCC-----HHHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCc-----HHHHHHHhh
Confidence 4678999999988 4532 1 1123455553 5556555444 677776653
No 7
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling, hedgehog VIA CO- immunoprecipitation, membrane protein; 2.40A {Drosophila melanogaster}
Probab=13.89 E-value=5e+02 Score=27.55 Aligned_cols=55 Identities=13% Similarity=0.269 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhhccc--cChhhHhhHHHHhhh--cCCchHHH
Q 011894 143 KMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFL--SNPIMLCDFLTRSYD--IGGVVSVM 203 (475)
Q Consensus 143 ~~k~~~~~awL~~Lk~~lp~~l~k~vL~~L~k~i~phl--~np~ll~DFLt~~~d--~gg~isll 203 (475)
..-++|++.+...|+. -+..|..|+.+.+..| .|-.++.||++++.. .|+.++|.
T Consensus 79 ~~~~~F~e~F~~LL~~------Se~~l~~mF~~tYg~ly~qn~~~f~~LF~~L~~Yy~g~~v~Le 137 (506)
T 3odn_A 79 SKATKFKDIFTALLKE------SRTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGRVDLL 137 (506)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHTTHHHHHTHHHHHHHHHHHHHHHHHSCSCHH
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHH
Confidence 3445677777777763 2334445554444443 477788888887543 56655443
No 8
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=13.81 E-value=59 Score=20.36 Aligned_cols=8 Identities=38% Similarity=0.812 Sum_probs=5.3
Q ss_pred HHHHHHHH
Q 011894 262 AAFVKKLS 269 (475)
Q Consensus 262 AAFiKRLl 269 (475)
--|||||-
T Consensus 14 ndFIKRLK 21 (24)
T 3si5_X 14 NDFIKRLK 21 (26)
T ss_pred HHHHHHHh
Confidence 35888873
No 9
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=13.68 E-value=3e+02 Score=23.45 Aligned_cols=49 Identities=24% Similarity=0.416 Sum_probs=30.1
Q ss_pred CCCcchHHHHHHHhh-CcCcc------------ccchhHHHHH-HHHHHhcCCCChHHHHHHHHHHHH
Q 011894 216 GLEYPNFYEKLYALL-VPSIF------------MAKHRAKFFE-LLDSCLRSPLLPAYLAAAFVKKLS 269 (475)
Q Consensus 216 Nld~~rFY~~LY~LL-dP~l~------------~s~~ra~Fl~-LL~~~Lks~~Lp~~RVAAFiKRLl 269 (475)
....+.|..+||.+| ||+.. .......|-. +|-++.+... .++|+..|-
T Consensus 14 ~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~n-----fsSFvRQLN 76 (125)
T 2ldu_A 14 PSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNN-----MASFVRQLN 76 (125)
T ss_dssp SCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCC-----HHHHHHHHH
T ss_pred CCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCc-----HHHHHHHhc
Confidence 345789999999977 55421 1123455654 5556666554 677776553
No 10
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=11.76 E-value=1e+03 Score=23.44 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHHHHhcCC---CcchHHHHHHH-hh--------CcCc-cccchhHHHHHHHHHHhcC
Q 011894 199 VVSVMALSSLFILMTQHGL---EYPNFYEKLYA-LL--------VPSI-FMAKHRAKFFELLDSCLRS 253 (475)
Q Consensus 199 ~isllAL~~LF~Li~~~Nl---d~~rFY~~LY~-LL--------dP~l-~~s~~ra~Fl~LL~~~Lks 253 (475)
.++-.+|..+..++.+-.- ....||++-|- +| |+.- ..-+.++++|+-+.....+
T Consensus 182 ~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~ 249 (321)
T 1w9c_A 182 NVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEE 249 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHHc
Confidence 4788889899888866431 23467776665 22 2221 1124566666666655544
Done!