Query 011894
Match_columns 475
No_of_seqs 270 out of 583
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 17:29:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011894.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011894hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zoqc1 a.153.1.1 (C:2065-2111 39.1 18 0.0013 24.3 4.0 34 151-191 5-38 (47)
2 d1wiga1 g.39.1.3 (A:1-32) Acti 26.2 4.6 0.00034 25.3 -0.7 8 363-370 24-31 (32)
3 d1eg3a1 a.39.1.7 (A:85-209) Dy 15.0 79 0.0058 25.4 4.4 36 177-212 81-122 (125)
4 d2gdwa1 a.28.1.2 (A:8-83) Pept 13.4 68 0.005 22.8 3.3 28 192-220 30-57 (76)
5 d2htsa_ a.4.5.22 (A:) Heat-sho 10.3 1.5E+02 0.011 22.1 4.6 14 220-233 3-17 (92)
6 d1eo0a_ a.48.3.1 (A:) Transcri 9.9 51 0.0037 24.4 1.4 22 359-380 50-71 (77)
7 d2jaka1 a.118.1.20 (A:30-372) 9.0 2.9E+02 0.021 25.3 7.0 23 158-180 56-78 (343)
8 d1w53a_ a.186.1.2 (A:) Phospho 6.8 3.5E+02 0.025 19.9 5.2 73 143-217 6-82 (84)
9 d2jm6b1 f.1.4.1 (B:147-308) EA 6.4 5.7E+02 0.042 20.1 9.5 89 204-294 44-136 (162)
10 d1dv5a_ a.28.1.3 (A:) apo-D-al 6.1 91 0.0066 22.2 1.3 54 163-220 4-57 (80)
No 1
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.08 E-value=18 Score=24.32 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=29.2
Q ss_pred HHHHhccCCCChhhHHHHHHHhhhhhhccccChhhHhhHHH
Q 011894 151 AWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLT 191 (475)
Q Consensus 151 awL~~Lk~~lp~~l~k~vL~~L~k~i~phl~np~ll~DFLt 191 (475)
-.++.||.+-++.+-..||.+|.. ||.+++-|+.
T Consensus 5 ~Ll~tLrsP~sP~QQqQvL~ILks-------NP~lmaaFIk 38 (47)
T d1zoqc1 5 DLLRTLKSPSSPQQQQQVLNILKS-------NPQLMAAFIK 38 (47)
T ss_dssp HHHHTCCSCCCHHHHHHHHHHHHT-------CHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHc-------CHHHHHHHHH
Confidence 367889988888999999999886 9999999975
No 2
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.16 E-value=4.6 Score=25.30 Aligned_cols=8 Identities=38% Similarity=0.895 Sum_probs=5.7
Q ss_pred hhccChHH
Q 011894 363 RHHYCPPV 370 (475)
Q Consensus 363 ~~HyHPsV 370 (475)
-+||||+.
T Consensus 24 ~khYHP~C 31 (32)
T d1wiga1 24 EKHYHPSC 31 (32)
T ss_dssp SCCBCTTT
T ss_pred ccccCCCC
Confidence 37888864
No 3
>d1eg3a1 a.39.1.7 (A:85-209) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.01 E-value=79 Score=25.44 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=25.3
Q ss_pred hccccC----hhhHhhHHHHhhhcC--CchHHHHHHHHHHHH
Q 011894 177 IPFLSN----PIMLCDFLTRSYDIG--GVVSVMALSSLFILM 212 (475)
Q Consensus 177 ~phl~n----p~ll~DFLt~~~d~g--g~isllAL~~LF~Li 212 (475)
.|+..| ..++..||...||.| |.++++++...+.++
T Consensus 81 ~~~~v~vp~~~dl~LN~LlnvYD~~rtG~i~vls~KvaL~~L 122 (125)
T d1eg3a1 81 HNNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISL 122 (125)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHT
T ss_pred CcccCChHHHHHHHHHHHHHHhCCCCCCeeeehHHHHHHHHH
Confidence 455566 345556999999986 578888887666544
No 4
>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]}
Probab=13.43 E-value=68 Score=22.80 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=20.2
Q ss_pred HhhhcCCchHHHHHHHHHHHHHhcCCCcc
Q 011894 192 RSYDIGGVVSVMALSSLFILMTQHGLEYP 220 (475)
Q Consensus 192 ~~~d~gg~isllAL~~LF~Li~~~Nld~~ 220 (475)
+.++.|| .|++|+.++-.|-+.+++..+
T Consensus 30 ~f~~lG~-dSl~a~~l~~~i~~~~~~~l~ 57 (76)
T d2gdwa1 30 NFFQIGG-HSLKAMAVAAQVHREYQVELP 57 (76)
T ss_dssp TSSTTTC-TTHHHHHHHHHHHHTTSSCCT
T ss_pred CHHHcCC-ChHHHHHHHHHHHHHHCCCCC
Confidence 3446665 788898888888887776543
No 5
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=10.30 E-value=1.5e+02 Score=22.07 Aligned_cols=14 Identities=36% Similarity=0.709 Sum_probs=11.4
Q ss_pred chHHHHHHHhh-CcC
Q 011894 220 PNFYEKLYALL-VPS 233 (475)
Q Consensus 220 ~rFY~~LY~LL-dP~ 233 (475)
|.|..+||.|| +|+
T Consensus 3 P~F~~kL~~~l~~~~ 17 (92)
T d2htsa_ 3 PAFVNKLWSMVNDKS 17 (92)
T ss_dssp CHHHHHHHHHHHCGG
T ss_pred CChHHHHHHHHcCcC
Confidence 67999999988 554
No 6
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.91 E-value=51 Score=24.37 Aligned_cols=22 Identities=9% Similarity=0.265 Sum_probs=18.3
Q ss_pred HHHHhhccChHHHHHHHHhhhc
Q 011894 359 IDTLRHHYCPPVSRFVLSLEND 380 (475)
Q Consensus 359 L~~L~~HyHPsVa~~A~~l~~~ 380 (475)
+..|+.|-+|.|+.+|+.|..+
T Consensus 50 Vn~LRkh~~~~v~~lAk~Lv~~ 71 (77)
T d1eo0a_ 50 VNKFKKSTNVEISKLVKKMISS 71 (77)
T ss_dssp HHHCCSSSCTTHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHH
Confidence 5578899999999999988764
No 7
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.02 E-value=2.9e+02 Score=25.30 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=14.9
Q ss_pred CCCChhhHHHHHHHhhhhhhccc
Q 011894 158 LPLPVDIYKEVLVTLHRAVIPFL 180 (475)
Q Consensus 158 ~~lp~~l~k~vL~~L~k~i~phl 180 (475)
..++.+++..+...+..+||=-+
T Consensus 56 ~~l~e~~~~~i~~Mi~~NifR~l 78 (343)
T d2jaka1 56 NVITEPIYPEVVHMFAVNMFRTL 78 (343)
T ss_dssp SCCCTTHHHHHHHHHHHHHCSCC
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 44777777777777666555433
No 8
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=6.75 E-value=3.5e+02 Score=19.93 Aligned_cols=73 Identities=11% Similarity=0.148 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhhccccChhhHhhHHHHhhhc---C-CchHHHHHHHHHHHHHhcCC
Q 011894 143 KMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDI---G-GVVSVMALSSLFILMTQHGL 217 (475)
Q Consensus 143 ~~k~~~~~awL~~Lk~~lp~~l~k~vL~~L~k~i~phl~np~ll~DFLt~~~d~---g-g~isllAL~~LF~Li~~~Nl 217 (475)
+++.++..+.-.+|...-...++ ....+.+.++-+=+.|+=+.+.-..+.+. + ..-...++..|.++|.++++
T Consensus 6 ~~~~~Y~~iL~~Yl~~~~E~~Ly--~~~~fsre~iek~IsPEeIV~iHk~~l~el~~~~~e~v~~Sfd~LlEVm~gyG~ 82 (84)
T d1w53a_ 6 VIEQRYHQLLSRYIAELTETSLY--QAQKFSRKTIEHQIPPEEIISIHRKVLKELYPSLPEDVFHSLDFLIEVMIGYGM 82 (84)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHcCc
Confidence 34444444544555432234455 67788888888989998888876655532 2 23457788899998887764
No 9
>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.41 E-value=5.7e+02 Score=20.14 Aligned_cols=89 Identities=11% Similarity=-0.018 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHhhCcCccccchhHHHHHHHHHHhcCCCChHHHHHHH---HHHHHHHhccC-ChhH
Q 011894 204 ALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAF---VKKLSRLSILV-PPSG 279 (475)
Q Consensus 204 AL~~LF~Li~~~Nld~~rFY~~LY~LLdP~l~~s~~ra~Fl~LL~~~Lks~~Lp~~RVAAF---iKRLlqlaL~a-Pp~~ 279 (475)
+...|-.+.....-.++.+|+.+.+-|+..- ..-...|.......++....+=.||.|+ .=+|+.-|... -+..
T Consensus 44 ~~~~L~~~g~ele~~~~~~f~~~~~~l~i~~--~~~~~~f~~Va~elf~dG~~NWGRIval~~F~~~la~~~~~~~~~~~ 121 (162)
T d2jm6b1 44 ALETLRRVGDGVQRNHETAFQGMLRKLDIKN--EGDVKSFSRVMVHVFKDGVTNWGRIVTLISFGAFVAKHLKSVNQESF 121 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCSS--TTHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--ccHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHcCChhH
Confidence 3344444444444456777877777553221 1224567777777777655465677654 44665555333 3556
Q ss_pred HHHHHHHHHHHHHhC
Q 011894 280 ALVIMALIHNLLRRH 294 (475)
Q Consensus 280 ~~~iL~lI~nLLkrh 294 (475)
+-.++.++...|..|
T Consensus 122 v~~i~~~~~~fl~~~ 136 (162)
T d2jm6b1 122 IEPLAETITDVLVRT 136 (162)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 667777888877654
No 10
>d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]}
Probab=6.13 E-value=91 Score=22.18 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=32.9
Q ss_pred hhHHHHHHHhhhhhhccccChhhHhhHHHHhhhcCCchHHHHHHHHHHHHHhcCCCcc
Q 011894 163 DIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYP 220 (475)
Q Consensus 163 ~l~k~vL~~L~k~i~phl~np~ll~DFLt~~~d~gg~isllAL~~LF~Li~~~Nld~~ 220 (475)
.+.+.++..+.+ ++. . ++.- .+--++.++.||.-|+.++.++..|-..+++.-|
T Consensus 4 ~I~~~v~~il~~-~l~-~-~~~~-i~~d~~l~e~gglDSl~~vel~~~ie~~fgi~i~ 57 (80)
T d1dv5a_ 4 AIKNGVLDILAD-LTG-S-DDVK-KNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAP 57 (80)
T ss_dssp HHHHHHHHHHHH-HHT-S-SSTT-TCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCC
T ss_pred HHHHHHHHHHHH-Hhc-c-chhh-cCCCccccccCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 455566666665 221 1 1110 1112334577888999999999999888887654
Done!