BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011895
(475 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 132/320 (41%), Positives = 191/320 (59%), Gaps = 8/320 (2%)
Query: 26 VGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELS 85
+G+ YG + NNLP P +VV L KS I R++ YD + A L AL NS+I V++ P ++
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 86 KAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKY 145
A++ S +W++ N+ Y+P+ +AVGNE+ + +++PAM+N+YN+L
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPG-SDLAQYILPAMRNIYNALSSA 119
Query: 146 KLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFA 205
L + +KVS+ + G L SYPPS+G+F S + L P+++FL + L+VN YP+F+
Sbjct: 120 GLQNQIKVSTAVDTGVLGTSYPPSAGAFSSA-AQAYLSPIVQFLASNGAPLLVNVYPYFS 178
Query: 206 YSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTET 265
Y+ N +ISL YALF + V G Y NLFDA +DAVFAA+ + +V VVV+E+
Sbjct: 179 YTGNPGQISLPYALFTASGVVVQDGR-FSYQNLFDAIVDAVFAALERVGGANVAVVVSES 237
Query: 266 GWPSVGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKPGPT 325
GWPS G E L+R V G GTP RP + Y+F +FNENQK G
Sbjct: 238 GWPSAGGGAE--ASTSNAQTYNQNLIRHV--GGGTPRRPGKEIEAYIFEMFNENQKAGGI 293
Query: 326 SERNYGLFYPNEQTVYDSPF 345
E+N+GLFYPN+Q VY F
Sbjct: 294 -EQNFGLFYPNKQPVYQISF 312
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 216 bits (549), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 125/320 (39%), Positives = 182/320 (56%), Gaps = 14/320 (4%)
Query: 26 VGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELS 85
+G+ YG + NNLPS VV+L +S+ I+ ++ Y D L+AL NS I +++ N++L+
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 86 KAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKY 145
AA S +WVQ N+ YYPA I+ +A GNEV T ++PAM+N+ N+ +
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEV---QGGATQSILPAMRNL-NAALSA 116
Query: 146 KLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFA 205
+KVS+ I + NS+PPS+G FK+ + + L T + L+ N YP+FA
Sbjct: 117 AGLGAIKVSTSIRFDEVANSFPPSAGVFKNAY----MTDVARLLASTGAPLLANVYPYFA 172
Query: 206 YSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTET 265
Y N ISL+YA F+ D NGL YT+LFDA +DAV+AA+ VKVVV+E+
Sbjct: 173 YRDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSES 232
Query: 266 GWPSVGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKPGPT 325
GWPS G L+ V G GTP + ++ L Y+FA+FNENQK G
Sbjct: 233 GWPSAGG---FAASAGNARTYNQGLINHV--GGGTP-KKREALETYIFAMFNENQKTGDA 286
Query: 326 SERNYGLFYPNEQTVYDSPF 345
+ER++GLF P++ Y+ F
Sbjct: 287 TERSFGLFNPDKSPAYNIQF 306
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 215 bits (548), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 185/323 (57%), Gaps = 12/323 (3%)
Query: 26 VGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELS 85
VG+ YG NNLP +V+ L K I R++ YD + AVL AL S+I +++ PN +L
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDL- 60
Query: 86 KAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNT---TPFLVPAMKNVYNSL 142
++ + S +WVQ N+ ++ + + +AVGNE+ + T F++PAM+N+++++
Sbjct: 61 QSLTNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAI 120
Query: 143 VKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYP 202
L +KVS+ I L + NSYPPS+G+F+ D + L P++ FL S L+ N YP
Sbjct: 121 RSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDD-VRSYLNPIIRFLSSIRSPLLANIYP 179
Query: 203 FFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVV 262
+F Y+ N ISL YALF +P V Y NLFDA LDA+++A+ S ++VVV
Sbjct: 180 YFTYAGNPRDISLPYALF-TSPSVVVWDGQRGYKNLFDATLDALYSALERASGGSLEVVV 238
Query: 263 TETGWPSVGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKP 322
+E+GWPS G V+R GTP RPK + YLFA+F+EN+K
Sbjct: 239 SESGWPSAGAFAATFDNGRTYLSNLIQHVKR-----GTPKRPKRAIETYLFAMFDENKKQ 293
Query: 323 GPTSERNYGLFYPNEQTVYDSPF 345
P E+++GLF+PN+ Y+ F
Sbjct: 294 -PEVEKHFGLFFPNKWQKYNLNF 315
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 188/324 (58%), Gaps = 16/324 (4%)
Query: 26 VGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELS 85
+G+ YG++ANNLPS + V++L + I +++ Y + V AL S+I +++ PN++L
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDL- 61
Query: 86 KAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTT----PFLVPAMKNVYNS 141
+A A+ S + WVQ NI ++P K + +AVGNEV DP + F+ PAM+N+YN+
Sbjct: 62 EALANPSNANGWVQDNIRNHFPDVKFKYIAVGNEV--DPGRESGKYARFVGPAMENIYNA 119
Query: 142 LVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAY 201
L L + +KVS+ G L N+YPP F+ + + + P++ FL + + L+ N Y
Sbjct: 120 LSSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEY-KSFINPIIGFLARHNLPLLANIY 178
Query: 202 PFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVV 261
P+F + N + + L YALF + + D+G Y NLFDA +D+++ A + +++++
Sbjct: 179 PYFGHIDNTNAVPLSYALF-NQQRRNDTG----YQNLFDALVDSMYFATEKLGGQNIEII 233
Query: 262 VTETGWPSVGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQK 321
V+E+GWPS E L+ V G+GTP +P + YLFA+F+EN+K
Sbjct: 234 VSESGWPS---EGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEK 290
Query: 322 PGPTSERNYGLFYPNEQTVYDSPF 345
G SE+++GLF P+++ Y F
Sbjct: 291 KGEASEKHFGLFNPDQRPKYQLNF 314
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/324 (34%), Positives = 187/324 (57%), Gaps = 16/324 (4%)
Query: 26 VGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELS 85
+G+ YG++ANNLPS + V++L + I +++ Y + V AL S+I +++ PN++L
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDL- 61
Query: 86 KAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTT----PFLVPAMKNVYNS 141
+A A+ S + WVQ NI ++P K + +AVGNEV DP + F+ PAM+N+YN+
Sbjct: 62 EALANPSNANGWVQDNIRNHFPDVKFKYIAVGNEV--DPGRESGKYARFVGPAMENIYNA 119
Query: 142 LVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAY 201
L L + +KVS+ G L N+YPP F+ + + + P++ FL + + L+ N Y
Sbjct: 120 LSSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEY-KSFINPIIGFLARHNLPLLANIY 178
Query: 202 PFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVV 261
P+F + N + + L YALF + + D+G Y NLFDA +D+++ A + +++++
Sbjct: 179 PYFGHIDNTNAVPLSYALF-NQQRRNDTG----YQNLFDALVDSMYFATEKLGGQNIEII 233
Query: 262 VTETGWPSVGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQK 321
V+ +GWPS E L+ V G+GTP +P + YLFA+F+EN+K
Sbjct: 234 VSASGWPS---EGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEK 290
Query: 322 PGPTSERNYGLFYPNEQTVYDSPF 345
G SE+++GLF P+++ Y F
Sbjct: 291 KGEASEKHFGLFNPDQRPKYQLNF 314
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 174/316 (55%), Gaps = 14/316 (4%)
Query: 26 VGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELS 85
+G+ YG ANNLP+ VV + KS I ++ Y + A L A+ + I+VVV PN+ LS
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 86 KAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKY 145
AA + +WV++NI + YP V VGNEV T LVPAMKNV+ +LV
Sbjct: 61 NLAASPAAAASWVKSNI-QAYPKVSFRYVCVGNEV---AGGATRNLVPAMKNVHGALVAA 116
Query: 146 KLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFA 205
L ++KV++ ++ L PPS+GSF + + P+++FL +T++ LM N YP+ A
Sbjct: 117 GL-GHIKVTTSVSQAILGVFSPPSAGSFTGE-AAAFMGPVVQFLARTNAPLMANIYPYLA 174
Query: 206 YSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTET 265
++ N + + YALF + G V Y NLFD +DA + AM + VK+VV+E+
Sbjct: 175 WAYNPSAMDMGYALFNAS-GTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSES 233
Query: 266 GWPSVGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKPGPT 325
GWPS G L+ V G GTP P + Y+FA+FNENQK
Sbjct: 234 GWPSGGGT---AATPANARFYNQHLINHV--GRGTPRHP-GAIETYIFAMFNENQKDSGV 287
Query: 326 SERNYGLFYPNEQTVY 341
E+N+GLFYPN Q VY
Sbjct: 288 -EQNWGLFYPNMQHVY 302
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 383 TWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQV 442
+WCV + +L I+YAC +G DC PIQ G C++PNT++AHA+Y N YYQ
Sbjct: 12 SWCVPKPGVSDDQLTGNINYACSQG-IDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAG 70
Query: 443 RKAGSCDFGGAAYVVTQAPS 462
R + +CDF A + PS
Sbjct: 71 RNSWNCDFSQTATLTNTNPS 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,957,230
Number of Sequences: 62578
Number of extensions: 514821
Number of successful extensions: 821
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 782
Number of HSP's gapped (non-prelim): 9
length of query: 475
length of database: 14,973,337
effective HSP length: 102
effective length of query: 373
effective length of database: 8,590,381
effective search space: 3204212113
effective search space used: 3204212113
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)