Query 011895
Match_columns 475
No_of_seqs 279 out of 1636
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:24:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 7.7E-87 1.7E-91 674.0 21.5 310 26-345 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 1E-45 2.3E-50 355.9 24.0 251 23-337 43-305 (305)
3 smart00768 X8 Possibly involve 99.9 2.6E-27 5.6E-32 196.4 8.2 79 383-462 1-79 (85)
4 PF07983 X8: X8 domain; Inter 99.9 1.9E-23 4.2E-28 170.2 6.5 73 383-455 1-78 (78)
5 PF07745 Glyco_hydro_53: Glyco 98.9 2.3E-07 5E-12 95.3 21.8 246 40-343 26-329 (332)
6 PF03198 Glyco_hydro_72: Gluca 98.5 1.4E-06 3E-11 88.0 14.4 127 25-156 29-182 (314)
7 COG3867 Arabinogalactan endo-1 98.3 3.6E-05 7.8E-10 76.9 17.9 249 39-345 64-390 (403)
8 PRK10150 beta-D-glucuronidase; 97.8 0.0019 4.2E-08 71.7 21.4 258 26-344 295-586 (604)
9 PF00150 Cellulase: Cellulase 97.8 0.0016 3.6E-08 63.9 18.0 128 25-154 10-171 (281)
10 smart00633 Glyco_10 Glycosyl h 97.2 0.035 7.6E-07 55.0 18.4 79 246-342 171-250 (254)
11 PF11790 Glyco_hydro_cc: Glyco 96.9 0.052 1.1E-06 53.5 16.5 66 258-338 166-231 (239)
12 PF02836 Glyco_hydro_2_C: Glyc 91.3 1.5 3.3E-05 44.2 10.2 96 25-120 17-132 (298)
13 PRK10340 ebgA cryptic beta-D-g 85.3 43 0.00093 40.1 18.3 97 26-122 337-452 (1021)
14 PRK09936 hypothetical protein; 84.3 24 0.00052 36.0 13.3 130 25-156 21-181 (296)
15 PF00232 Glyco_hydro_1: Glycos 83.9 0.5 1.1E-05 51.0 1.4 278 40-336 60-430 (455)
16 cd02875 GH18_chitobiase Chitob 80.5 6.7 0.00014 41.0 8.2 134 50-204 54-190 (358)
17 TIGR03356 BGL beta-galactosida 75.1 8.5 0.00018 41.3 7.3 77 255-338 335-414 (427)
18 PF02449 Glyco_hydro_42: Beta- 74.9 12 0.00026 39.1 8.3 83 40-122 12-140 (374)
19 smart00481 POLIIIAc DNA polyme 61.6 25 0.00054 27.0 5.6 44 37-80 14-62 (67)
20 PF14488 DUF4434: Domain of un 61.0 1E+02 0.0022 28.7 10.5 87 63-154 69-160 (166)
21 PRK13511 6-phospho-beta-galact 57.3 38 0.00081 36.9 7.9 75 255-338 365-446 (469)
22 cd02874 GH18_CFLE_spore_hydrol 55.7 65 0.0014 32.6 9.0 82 62-147 48-138 (313)
23 PF00925 GTP_cyclohydro2: GTP 54.9 15 0.00032 34.3 3.8 38 43-80 131-168 (169)
24 cd02872 GH18_chitolectin_chito 54.0 55 0.0012 33.9 8.3 76 70-146 68-151 (362)
25 COG4782 Uncharacterized protei 53.1 51 0.0011 34.7 7.7 70 235-314 125-197 (377)
26 TIGR00505 ribA GTP cyclohydrol 48.5 26 0.00056 33.4 4.4 33 44-76 131-163 (191)
27 PLN03059 beta-galactosidase; P 48.1 3.2E+02 0.0069 32.2 13.6 153 3-158 5-223 (840)
28 PRK00393 ribA GTP cyclohydrola 47.6 27 0.00058 33.5 4.4 33 44-76 134-166 (197)
29 PLN02998 beta-glucosidase 47.4 53 0.0011 36.1 7.1 75 255-338 390-466 (497)
30 KOG0626 Beta-glucosidase, lact 45.0 46 0.001 36.6 6.1 75 254-336 404-486 (524)
31 PLN02814 beta-glucosidase 44.0 65 0.0014 35.4 7.2 75 255-338 385-461 (504)
32 PF06180 CbiK: Cobalt chelatas 43.7 2E+02 0.0043 29.0 10.0 138 36-207 56-209 (262)
33 PLN02849 beta-glucosidase 43.6 76 0.0016 35.0 7.6 75 255-338 383-461 (503)
34 PRK09525 lacZ beta-D-galactosi 43.2 1.2E+02 0.0026 36.5 9.7 97 25-121 352-464 (1027)
35 PF04909 Amidohydro_2: Amidohy 41.9 66 0.0014 30.8 6.3 118 93-268 56-175 (273)
36 cd02873 GH18_IDGF The IDGF's ( 40.3 1.2E+02 0.0026 32.4 8.4 17 131-147 171-187 (413)
37 PRK09589 celA 6-phospho-beta-g 40.0 56 0.0012 35.6 5.9 74 258-338 368-447 (476)
38 PRK09593 arb 6-phospho-beta-gl 39.1 46 0.00099 36.3 5.1 74 258-338 369-448 (478)
39 cd06545 GH18_3CO4_chitinase Th 38.8 53 0.0011 32.3 5.1 81 63-147 50-133 (253)
40 PF03662 Glyco_hydro_79n: Glyc 38.5 83 0.0018 32.6 6.5 81 64-144 113-202 (319)
41 cd00641 GTP_cyclohydro2 GTP cy 38.2 45 0.00097 31.7 4.3 33 44-76 133-165 (193)
42 PLN03030 cationic peroxidase; 37.7 26 0.00057 36.3 2.8 40 6-45 3-42 (324)
43 PRK12485 bifunctional 3,4-dihy 37.4 39 0.00084 35.7 4.0 33 43-76 330-362 (369)
44 PRK15014 6-phospho-beta-glucos 34.1 61 0.0013 35.4 5.0 74 258-338 369-448 (477)
45 PRK14019 bifunctional 3,4-dihy 34.0 47 0.001 35.1 4.0 32 44-76 328-359 (367)
46 PF05990 DUF900: Alpha/beta hy 33.0 1.3E+02 0.0029 29.3 6.8 44 250-296 42-88 (233)
47 PRK06552 keto-hydroxyglutarate 31.8 4.8E+02 0.01 25.3 10.3 87 37-143 116-210 (213)
48 COG3934 Endo-beta-mannanase [C 31.4 1.7E+02 0.0036 32.2 7.5 186 95-343 123-312 (587)
49 PRK09314 bifunctional 3,4-dihy 31.1 60 0.0013 33.9 4.2 35 42-76 299-334 (339)
50 COG4213 XylF ABC-type xylose t 30.2 1.1E+02 0.0024 31.8 5.7 75 62-155 175-249 (341)
51 PRK08815 GTP cyclohydrolase; P 29.9 67 0.0014 34.1 4.3 37 44-80 305-341 (375)
52 PRK09318 bifunctional 3,4-dihy 29.9 67 0.0015 34.2 4.4 37 44-80 320-356 (387)
53 PRK09311 bifunctional 3,4-dihy 29.1 72 0.0016 34.1 4.4 34 43-76 338-371 (402)
54 PLN02831 Bifunctional GTP cycl 29.0 70 0.0015 34.7 4.4 36 44-79 373-408 (450)
55 PF00331 Glyco_hydro_10: Glyco 28.9 58 0.0013 33.4 3.6 91 244-341 220-311 (320)
56 cd04743 NPD_PKS 2-Nitropropane 28.8 3.1E+02 0.0067 28.5 8.9 79 24-120 56-134 (320)
57 TIGR01579 MiaB-like-C MiaB-lik 28.7 7.1E+02 0.015 26.2 12.3 140 36-206 165-330 (414)
58 PRK09319 bifunctional 3,4-dihy 28.1 74 0.0016 35.4 4.4 38 43-80 342-379 (555)
59 PRK09852 cryptic 6-phospho-bet 28.0 1.1E+02 0.0023 33.5 5.7 73 258-338 366-444 (474)
60 PF14587 Glyco_hydr_30_2: O-Gl 28.0 4.3E+02 0.0093 28.2 9.8 93 63-158 108-227 (384)
61 KOG0078 GTP-binding protein SE 27.0 1.5E+02 0.0033 28.9 5.8 79 23-120 42-127 (207)
62 smart00636 Glyco_18 Glycosyl h 26.2 1.1E+02 0.0024 31.1 5.1 79 65-145 57-142 (334)
63 TIGR03628 arch_S11P archaeal r 26.1 1.4E+02 0.0031 26.2 5.1 36 41-76 53-101 (114)
64 COG4669 EscJ Type III secretor 26.1 3.5E+02 0.0077 27.0 8.2 58 37-112 30-87 (246)
65 COG1433 Uncharacterized conser 26.1 1.3E+02 0.0028 26.8 4.8 39 42-80 56-94 (121)
66 PF02055 Glyco_hydro_30: O-Gly 25.9 8.3E+02 0.018 26.9 12.0 60 96-155 208-278 (496)
67 cd04734 OYE_like_3_FMN Old yel 25.5 7.6E+02 0.017 25.5 13.6 129 166-300 64-207 (343)
68 TIGR03632 bact_S11 30S ribosom 25.4 1.4E+02 0.003 25.9 4.8 36 41-76 50-90 (108)
69 cd06418 GH25_BacA-like BacA is 24.5 6.5E+02 0.014 24.3 11.4 107 38-148 21-143 (212)
70 TIGR02495 NrdG2 anaerobic ribo 24.0 5.6E+02 0.012 23.4 10.9 41 37-77 46-95 (191)
71 PRK14327 (dimethylallyl)adenos 23.8 4.5E+02 0.0099 29.0 9.6 29 128-156 346-374 (509)
72 cd00598 GH18_chitinase-like Th 23.4 1.6E+02 0.0035 27.3 5.3 84 63-147 53-142 (210)
73 COG0807 RibA GTP cyclohydrolas 23.2 1.2E+02 0.0026 29.2 4.3 38 44-81 133-170 (193)
74 cd02876 GH18_SI-CLP Stabilin-1 23.1 5E+02 0.011 26.3 9.2 84 63-147 55-148 (318)
75 TIGR01233 lacG 6-phospho-beta- 23.0 2E+02 0.0044 31.3 6.6 75 255-338 364-444 (467)
76 COG2896 MoaA Molybdenum cofact 22.8 8.3E+02 0.018 25.4 10.6 137 36-207 41-189 (322)
77 PF14871 GHL6: Hypothetical gl 22.1 2.1E+02 0.0045 25.6 5.5 41 40-80 2-65 (132)
78 PRK09607 rps11p 30S ribosomal 21.9 1.9E+02 0.0041 26.1 5.1 36 41-76 60-108 (132)
79 PRK07198 hypothetical protein; 21.8 74 0.0016 33.9 2.8 37 44-80 338-375 (418)
80 PF02811 PHP: PHP domain; Int 21.5 1.7E+02 0.0036 26.1 4.9 45 37-81 15-64 (175)
81 COG2159 Predicted metal-depend 21.0 4.4E+02 0.0096 26.7 8.3 95 133-272 113-209 (293)
82 PRK14334 (dimethylallyl)adenos 20.8 6E+02 0.013 27.2 9.7 54 130-203 273-326 (440)
83 PRK13347 coproporphyrinogen II 20.7 1.3E+02 0.0027 32.5 4.5 18 131-148 265-282 (453)
84 PRK14326 (dimethylallyl)adenos 20.4 5.5E+02 0.012 28.2 9.4 56 128-203 291-346 (502)
85 KOG1462 Translation initiation 20.4 4.4E+02 0.0096 28.3 8.1 110 64-210 46-156 (433)
86 PRK13586 1-(5-phosphoribosyl)- 20.0 4.1E+02 0.0088 26.0 7.5 70 38-123 30-108 (232)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=7.7e-87 Score=674.01 Aligned_cols=310 Identities=54% Similarity=0.935 Sum_probs=255.0
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEEecCcchHHHhhhChhHHHHHHHHhhhhc
Q 011895 26 VGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKY 105 (475)
Q Consensus 26 ~GvnYg~~~~n~ps~~~v~~llk~~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv~n~~l~~la~~~~~a~~wv~~~v~~~ 105 (475)
||||||+.++|+|+|.+|+++||+++|++||||++|+++|+|+++|||+|++||+|++|+++++++..|..||++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCccccCccchhhhhhH
Q 011895 106 YPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPM 185 (475)
Q Consensus 106 ~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~l~~~ 185 (475)
+|.++|++|+||||++..... ..|+|+|+++|++|++.||+++|||+|+++++++.++||||+|.|++++. ..|.++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~--~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~-~~~~~~ 157 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDN--AYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIA-SVMDPL 157 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGG--GGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHH-HHHHHH
T ss_pred CcccceeeeecccccccCccc--eeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccch-hhhhHH
Confidence 999999999999999986321 15999999999999999999899999999999999999999999999887 689999
Q ss_pred HHHHHhcCCcceeccCCccccccCCCccccccccccCCCCcccCCCCcccccHHHHHHHHHHHHHHHcCCCCceEEEeee
Q 011895 186 LEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTET 265 (475)
Q Consensus 186 ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~~d~~~~~~Y~nlfda~~dav~~A~~k~g~~~~~vvVtET 265 (475)
++||.+|+||||+|+||||++..+|.+++||||+|+++..+.|. +++|+||||+|+|++++||+|+|+++++|+|+||
T Consensus 158 l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ET 235 (310)
T PF00332_consen 158 LKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGET 235 (310)
T ss_dssp HHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE
T ss_pred HHHhhccCCCceeccchhhhccCCcccCCccccccccccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEecc
Confidence 99999999999999999999999999999999999998777765 8899999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCCCCCCCCCCccccccCCCCCeeeeecc
Q 011895 266 GWPSVGDENEAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKPGPTSERNYGLFYPNEQTVYDSPF 345 (475)
Q Consensus 266 GWPS~G~~~~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~yiF~lFDE~~K~g~~~E~~wGlf~~d~~~ky~l~~ 345 (475)
||||+|+ .+|+.+||++|++++++|+. +|||+||+..+++||||||||+||+++.+|||||||++||+|||+|+|
T Consensus 236 GWPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 236 GWPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp ---SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred ccccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 9999998 35999999999999999996 799999999999999999999999987799999999999999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-45 Score=355.91 Aligned_cols=251 Identities=22% Similarity=0.328 Sum_probs=206.5
Q ss_pred CCceeEEecCCCCC--CCCHHHHHHHHHhC-C-CCEEEEecCC----hHHHHHhhcCCCeEEEecCcc-hHHHhhhChhH
Q 011895 23 TGKVGINYGRVANN--LPSPEKVVELLKSQ-R-IDRVKTYDTD----SAVLAALANSDISVVVAFPNE-ELSKAAADQSF 93 (475)
Q Consensus 23 ~~~~GvnYg~~~~n--~ps~~~v~~llk~~-~-~~~VRlY~~d----~~vL~A~~~tgi~V~lGv~n~-~l~~la~~~~~ 93 (475)
.+..+|+||++.++ ||+.++|..+|... . ...||+|.+| .+|++|+...|++|+||||-. ++. ..
T Consensus 43 ~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~------~~ 116 (305)
T COG5309 43 SGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIH------DA 116 (305)
T ss_pred ccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchh------hh
Confidence 35689999999876 99999998777652 2 3499999988 468899999999999999843 322 12
Q ss_pred HHHHHHHhhhhcCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCccc
Q 011895 94 TDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSF 173 (475)
Q Consensus 94 a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F 173 (475)
.+.-++..+++++.++.|++|+||||+|+|++.+..+|+.+|..+|++|+++|++ +||+|+++|.+|.+.
T Consensus 117 ~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~n-------- 186 (305)
T COG5309 117 VEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVINN-------- 186 (305)
T ss_pred HHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeCC--------
Confidence 2225667788888889999999999999998876667999999999999999997 569999999999862
Q ss_pred cCccchhhhhhHHHHHHhcCCcceeccCCccccccCCCccccccccccCCCCcccCCCCcccccHHHHHHHHHHHHHHHc
Q 011895 174 KSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAI 253 (475)
Q Consensus 174 ~~~~~~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~~d~~~~~~Y~nlfda~~dav~~A~~k~ 253 (475)
|.|++..||+ |+|.||||+...- .+. . + .+|..|++.|++++
T Consensus 187 ------p~l~~~SDfi-------a~N~~aYwd~~~~-----------------a~~-~---~-~f~~~q~e~vqsa~--- 228 (305)
T COG5309 187 ------PELCQASDFI-------AANAHAYWDGQTV-----------------ANA-A---G-TFLLEQLERVQSAC--- 228 (305)
T ss_pred ------hHHhhhhhhh-------hcccchhccccch-----------------hhh-h---h-HHHHHHHHHHHHhc---
Confidence 5688888998 9999999998532 111 1 1 25567788888876
Q ss_pred CCCCceEEEeeecCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCCCCC-CC-CCCccc
Q 011895 254 SYNDVKVVVTETGWPSVGDEN-EAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKP-GP-TSERNY 330 (475)
Q Consensus 254 g~~~~~vvVtETGWPS~G~~~-~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~yiF~lFDE~~K~-g~-~~E~~w 330 (475)
| .+++++|+||||||.|..+ ++.||++||+.|++++++.+++ .++++|+||+|||+||+ |. ++|+||
T Consensus 229 g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~~y~VEkyw 298 (305)
T COG5309 229 G-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADGSYGVEKYW 298 (305)
T ss_pred C-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCccccchhhce
Confidence 2 3499999999999999996 5789999999999999998864 36899999999999994 44 899999
Q ss_pred cccCCCC
Q 011895 331 GLFYPNE 337 (475)
Q Consensus 331 Glf~~d~ 337 (475)
|++..|+
T Consensus 299 Gv~~s~~ 305 (305)
T COG5309 299 GVLSSDR 305 (305)
T ss_pred eeeccCC
Confidence 9998875
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.94 E-value=2.6e-27 Score=196.37 Aligned_cols=79 Identities=65% Similarity=1.200 Sum_probs=77.3
Q ss_pred ceEEecCCCChHHHHHHhhhhhcCCCCCCcccCCCCcccCCCChhhhHhHHHhHHHHHccCCCCCCCCCCceEEEccCCC
Q 011895 383 TWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPS 462 (475)
Q Consensus 383 ~~Cv~~~~~~~~~l~~~ld~aCg~~~~dC~~I~~~g~c~~~~~~~~~asya~N~Yyq~~~~~~~~CdF~G~a~~~~~~ps 462 (475)
+|||+|+++++++||++||||||++ +||++|++||+||+||++++|||||||+|||++++.+++|||+|.|++++.|||
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~-~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps 79 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS 79 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCC-CCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence 5999999999999999999999987 999999999999999999999999999999999999999999999999999998
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.89 E-value=1.9e-23 Score=170.22 Aligned_cols=73 Identities=53% Similarity=1.021 Sum_probs=63.5
Q ss_pred ceEEecCCCChHHHHHHhhhhhcCCCCCCcccCCCCc-----ccCCCChhhhHhHHHhHHHHHccCCCCCCCCCCceE
Q 011895 383 TWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGAT-----CYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAY 455 (475)
Q Consensus 383 ~~Cv~~~~~~~~~l~~~ld~aCg~~~~dC~~I~~~g~-----c~~~~~~~~~asya~N~Yyq~~~~~~~~CdF~G~a~ 455 (475)
+|||+++++++++|+++|||||+++++||++|+++|+ .||+|+.++|||||||+|||++++.+.+|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 6999999999999999999999998899999999999 899999999999999999999999999999999997
No 5
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.90 E-value=2.3e-07 Score=95.31 Aligned_cols=246 Identities=18% Similarity=0.250 Sum_probs=122.3
Q ss_pred HHHHHHHHHhCCCCEEE--Eec-C------C-hHHH---HHhhcCCCeEEEecCcc---------hHHHhhhCh------
Q 011895 40 PEKVVELLKSQRIDRVK--TYD-T------D-SAVL---AALANSDISVVVAFPNE---------ELSKAAADQ------ 91 (475)
Q Consensus 40 ~~~v~~llk~~~~~~VR--lY~-~------d-~~vL---~A~~~tgi~V~lGv~n~---------~l~~la~~~------ 91 (475)
..+++++||..|++.|| +|. + | ..++ +.+++.||+|+|-.--+ .++.-..+.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 46789999999988555 452 1 1 2344 45568999999988211 122222111
Q ss_pred hHHHHHHHHhhhhcC-CCCeEEEEEeccccccC-----CCCChhh-HHHHHHHHHHHHHhCCCCCCeEEecccccccccc
Q 011895 92 SFTDNWVQANISKYY-PATKIEAVAVGNEVFAD-----PKNTTPF-LVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQN 164 (475)
Q Consensus 92 ~~a~~wv~~~v~~~~-p~~~I~~I~VGNEvl~~-----~~~~~~~-L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~ 164 (475)
.+..++.+.-+...- -++.++.|-||||+-.. +...-.. +...++...+++|+..- .+||-.-.. ....
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~-~~~~- 181 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLA-NGGD- 181 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES--TTS-
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEC-CCCc-
Confidence 122223332222221 24778999999998543 1112233 78888888888887543 355432211 0000
Q ss_pred cCCCCCccccCccchhhhhhHHHHHHhcC---CcceeccCCccccccCCCccccccccccCCCCcccCCCCcccccHHHH
Q 011895 165 SYPPSSGSFKSDLIEPALKPMLEFLRKTS---SYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDA 241 (475)
Q Consensus 165 s~pPS~g~F~~~~~~~~l~~~ldfL~~t~---sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~~d~~~~~~Y~nlfda 241 (475)
. ..+.-..+-|...+ |.++++.||||.... +-+..
T Consensus 182 -------------~-~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l----------------------------~~l~~ 219 (332)
T PF07745_consen 182 -------------N-DLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTL----------------------------EDLKN 219 (332)
T ss_dssp -------------H-HHHHHHHHHHHHTTGG-SEEEEEE-STTST-H----------------------------HHHHH
T ss_pred -------------h-HHHHHHHHHHHhcCCCcceEEEecCCCCcchH----------------------------HHHHH
Confidence 0 12333444444433 678999999997611 11333
Q ss_pred HHHHHHHHHHHcCCCCceEEEeeecCCCCCCC-----CC---------CCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 011895 242 QLDAVFAAMSAISYNDVKVVVTETGWPSVGDE-----NE---------AGAGAANAAAYNGNLVRRVLSGSGTPLRPKDP 307 (475)
Q Consensus 242 ~~dav~~A~~k~g~~~~~vvVtETGWPS~G~~-----~~---------~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~ 307 (475)
.++.+. ++ | +|+|+|.|||||..-+. +. -.+|++.|+.|++.+++.+.+..+ +..
T Consensus 220 ~l~~l~---~r--y-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~-----~~g 288 (332)
T PF07745_consen 220 NLNDLA---SR--Y-GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN-----GGG 288 (332)
T ss_dssp HHHHHH---HH--H-T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTE
T ss_pred HHHHHH---HH--h-CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----CCe
Confidence 333332 33 3 58999999999998211 11 126899999999999999975211 123
Q ss_pred ccEEEEEe-cCCCC-----CCCCCCCccccccCCCCCeeeee
Q 011895 308 LNVYLFAL-FNENQ-----KPGPTSERNYGLFYPNEQTVYDS 343 (475)
Q Consensus 308 ~~~yiF~l-FDE~~-----K~g~~~E~~wGlf~~d~~~ky~l 343 (475)
+-+|+-|- .-..+ ..|...|.. +||+.+|++--.|
T Consensus 289 ~GvfYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 289 LGVFYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp EEEEEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGG
T ss_pred EEEEeeccccccCCcccccCCCCCcccc-ccCCCCCCCchHh
Confidence 45555442 22111 123233433 8999888865433
No 6
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.55 E-value=1.4e-06 Score=88.04 Aligned_cols=127 Identities=21% Similarity=0.380 Sum_probs=72.2
Q ss_pred ceeEEecCCCC-------C-CCCHHH---HHHHHHhCCCCEEEEecCCh-----HHHHHhhcCCCeEEEecCc--chHHH
Q 011895 25 KVGINYGRVAN-------N-LPSPEK---VVELLKSQRIDRVKTYDTDS-----AVLAALANSDISVVVAFPN--EELSK 86 (475)
Q Consensus 25 ~~GvnYg~~~~-------n-~ps~~~---v~~llk~~~~~~VRlY~~d~-----~vL~A~~~tgi~V~lGv~n--~~l~~ 86 (475)
..||.|-+.++ | |-.++. -+.+||..|+..||+|..|+ .-+++|++.||-|++.|.. ..|..
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~~sI~r 108 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPNGSINR 108 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTTBS--T
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCCccccC
Confidence 36999988765 2 222222 24588999999999998873 4689999999999999953 22222
Q ss_pred hhhChhHHHHH-------HHHhhhhcCCCCeEEEEEeccccccCCCC-Chhh-HHHHHHHHHHHHHhCCCCCCeEEecc
Q 011895 87 AAADQSFTDNW-------VQANISKYYPATKIEAVAVGNEVFADPKN-TTPF-LVPAMKNVYNSLVKYKLDSNVKVSSP 156 (475)
Q Consensus 87 la~~~~~a~~w-------v~~~v~~~~p~~~I~~I~VGNEvl~~~~~-~~~~-L~~am~nv~~aL~~~gl~~~IkVsT~ 156 (475)
. ++ +..| +.+-|..+-.-.++-+..+|||++..... ..++ +-.+++.+|+-+++.++. +|+|+-+
T Consensus 109 ~--~P--~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYs 182 (314)
T PF03198_consen 109 S--DP--APSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYS 182 (314)
T ss_dssp T--S--------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEE
T ss_pred C--CC--cCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEE
Confidence 1 11 1122 22334444333789999999999987422 3455 888999999999999986 4898855
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.33 E-value=3.6e-05 Score=76.92 Aligned_cols=249 Identities=18% Similarity=0.293 Sum_probs=131.6
Q ss_pred CHHHHHHHHHhCCCCEEEE--e----cCC--------hHH------HHHhhcCCCeEEEecCcchHHHhhhChh---HHH
Q 011895 39 SPEKVVELLKSQRIDRVKT--Y----DTD--------SAV------LAALANSDISVVVAFPNEELSKAAADQS---FTD 95 (475)
Q Consensus 39 s~~~v~~llk~~~~~~VRl--Y----~~d--------~~v------L~A~~~tgi~V~lGv~n~~l~~la~~~~---~a~ 95 (475)
-.+++.+.||..|+..||| | |.| .++ -+-+++.||||++-.--+| ..+++. .-.
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSD---fwaDPakQ~kPk 140 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSD---FWADPAKQKKPK 140 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchh---hccChhhcCCcH
Confidence 3567788999999875554 4 333 222 2344689999999883322 111111 111
Q ss_pred HH-------HHHhhhhc--------C-CCCeEEEEEeccccccC-----CCC-ChhhHHHHHHHHHHHHHhCCCCCCeEE
Q 011895 96 NW-------VQANISKY--------Y-PATKIEAVAVGNEVFAD-----PKN-TTPFLVPAMKNVYNSLVKYKLDSNVKV 153 (475)
Q Consensus 96 ~w-------v~~~v~~~--------~-p~~~I~~I~VGNEvl~~-----~~~-~~~~L~~am~nv~~aL~~~gl~~~IkV 153 (475)
+| +++.|-.| . -...+..|-||||.-.. ++. ....+...++.--+++|...- .|||
T Consensus 141 aW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p--~ikv 218 (403)
T COG3867 141 AWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSP--TIKV 218 (403)
T ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCC--CceE
Confidence 22 22222222 1 13668899999998543 122 222266666666666666432 3665
Q ss_pred ecccccccccccCCCCCccccCccchhhhhhHHHHHHhcCCcceeccCCccccccCCCccccccccccCCCCcccCCCCc
Q 011895 154 SSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGL 233 (475)
Q Consensus 154 sT~~~~~vl~~s~pPS~g~F~~~~~~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~~d~~~~~ 233 (475)
---. .+ |--.+.|+- +.+..-+.-+|| +.+++--||||.+.-+
T Consensus 219 ~lHl-----a~--g~~n~~y~~-~fd~ltk~nvdf-----DVig~SyYpyWhgtl~------------------------ 261 (403)
T COG3867 219 ALHL-----AE--GENNSLYRW-IFDELTKRNVDF-----DVIGSSYYPYWHGTLN------------------------ 261 (403)
T ss_pred EEEe-----cC--CCCCchhhH-HHHHHHHcCCCc-----eEEeeeccccccCcHH------------------------
Confidence 4322 11 112234431 111122223333 4668888999987421
Q ss_pred ccccHHHHHHHHHHHHHHHcCCCCceEEEeeecC--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 011895 234 KYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGW--------------PSVGDENEAGAGAANAAAYNGNLVRRVLSGSG 299 (475)
Q Consensus 234 ~Y~nlfda~~dav~~A~~k~g~~~~~vvVtETGW--------------PS~G~~~~~~as~~na~~y~~~li~~~~~~~G 299 (475)
| +...++.+- .+ -+|.|+|.||+. |+.+...+--.+++-|++|.+.+|..+..
T Consensus 262 ---n-L~~nl~dia---~r---Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n--- 328 (403)
T COG3867 262 ---N-LTTNLNDIA---SR---YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN--- 328 (403)
T ss_pred ---H-HHhHHHHHH---HH---hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh---
Confidence 0 111122221 11 268999999998 55553323347889999999999999874
Q ss_pred CCCCCCCCccEEEEE-------------------ecCCCCCCCCCCCccccccCCCCCeeeeecc
Q 011895 300 TPLRPKDPLNVYLFA-------------------LFNENQKPGPTSERNYGLFYPNEQTVYDSPF 345 (475)
Q Consensus 300 tp~rpg~~~~~yiF~-------------------lFDE~~K~g~~~E~~wGlf~~d~~~ky~l~~ 345 (475)
.|.- ++.-+|+.| .-.|+|+.| ..--+--||+.+|.|.-.|..
T Consensus 329 vp~~--~GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~g-savdNqaLfdf~G~~LPSl~v 390 (403)
T COG3867 329 VPKS--NGLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEG-SAVDNQALFDFNGHPLPSLNV 390 (403)
T ss_pred CCCC--CceEEEEecccceeccCCCccccchhhccCcccccCC-CccchhhhhhccCCcCcchhh
Confidence 2221 123344433 223456555 222344567777766555544
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.83 E-value=0.0019 Score=71.74 Aligned_cols=258 Identities=12% Similarity=0.078 Sum_probs=141.6
Q ss_pred eeEEecCCCC---CCCCHHHH---HHHHHhCCCCEEEEe--cCChHHHHHhhcCCCeEEEecCcchH-------------
Q 011895 26 VGINYGRVAN---NLPSPEKV---VELLKSQRIDRVKTY--DTDSAVLAALANSDISVVVAFPNEEL------------- 84 (475)
Q Consensus 26 ~GvnYg~~~~---n~ps~~~v---~~llk~~~~~~VRlY--~~d~~vL~A~~~tgi~V~lGv~n~~l------------- 84 (475)
.|+|+-.-.. ...+.+.. +++||..|++.||+- -.++..+.++-..||-|+.=++....
T Consensus 295 rG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 295 KGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred EeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 4777632211 12444443 567899999999993 23578999999999999865532100
Q ss_pred --HHhh------hChhHHHHHHHHhhhhcCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCCeEEecc
Q 011895 85 --SKAA------ADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSP 156 (475)
Q Consensus 85 --~~la------~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~nv~~aL~~~gl~~~IkVsT~ 156 (475)
.... .......+.+++.|..+.-.-.|..=.+|||.-... ......++.+.+.+++..-+. +|+.+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~----~~~~~~~~~l~~~~k~~DptR--~vt~~ 448 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASRE----QGAREYFAPLAELTRKLDPTR--PVTCV 448 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCccc----hhHHHHHHHHHHHHHhhCCCC--ceEEE
Confidence 0000 011122334566676664444578899999964321 113344555555565554332 34443
Q ss_pred cccccccccCCCCCccccCccchhhhhhHHHHHHhcCCcceeccCCccccccCCCccccccccccCCCCcccCCCCcccc
Q 011895 157 IALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYT 236 (475)
Q Consensus 157 ~~~~vl~~s~pPS~g~F~~~~~~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~~d~~~~~~Y~ 236 (475)
..+. . .|. . ..+.+++|++ ..|.|+=|-. +... .+ ...
T Consensus 449 ~~~~---~--~~~-----~----~~~~~~~Dv~-------~~N~Y~~wy~--~~~~----~~---------------~~~ 486 (604)
T PRK10150 449 NVMF---A--TPD-----T----DTVSDLVDVL-------CLNRYYGWYV--DSGD----LE---------------TAE 486 (604)
T ss_pred eccc---C--Ccc-----c----ccccCcccEE-------EEcccceecC--CCCC----HH---------------HHH
Confidence 2110 0 010 0 1134566766 8898753221 1100 00 001
Q ss_pred cHHHHHHHHHHHHHHHcCCCCceEEEeeecCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEE
Q 011895 237 NLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGDE---NEAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLF 313 (475)
Q Consensus 237 nlfda~~dav~~A~~k~g~~~~~vvVtETGWPS~G~~---~~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~yiF 313 (475)
..++..++... ++ + ++|++|+|.|+.+.-+. ....-+.+.|..|++...+.+.+ +|. -.-.|+.
T Consensus 487 ~~~~~~~~~~~---~~--~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW 553 (604)
T PRK10150 487 KVLEKELLAWQ---EK--L-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVW 553 (604)
T ss_pred HHHHHHHHHHH---Hh--c-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEE
Confidence 12333333221 11 2 79999999997663211 11124688888888877776653 232 4558999
Q ss_pred EecCCCCCCCC--CCCccccccCCCCCeeeeec
Q 011895 314 ALFNENQKPGP--TSERNYGLFYPNEQTVYDSP 344 (475)
Q Consensus 314 ~lFDE~~K~g~--~~E~~wGlf~~d~~~ky~l~ 344 (475)
.+||-....|. ....+.||++.||+||-..-
T Consensus 554 ~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~~ 586 (604)
T PRK10150 554 NFADFATSQGILRVGGNKKGIFTRDRQPKSAAF 586 (604)
T ss_pred eeeccCCCCCCcccCCCcceeEcCCCCChHHHH
Confidence 99996554331 12247899999999996543
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.79 E-value=0.0016 Score=63.95 Aligned_cols=128 Identities=14% Similarity=0.165 Sum_probs=80.0
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecC-------------C-------hHHHHHhhcCCCeEEEecCcc-h
Q 011895 25 KVGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDT-------------D-------SAVLAALANSDISVVVAFPNE-E 83 (475)
Q Consensus 25 ~~GvnYg~~~~n~ps~~~v~~llk~~~~~~VRlY~~-------------d-------~~vL~A~~~tgi~V~lGv~n~-~ 83 (475)
..|+|-. ..+.. ..++.++.+++.|++.|||.-. + ..+|++++..||.|+|.+... .
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 3466654 22122 7888899999999999999721 1 257788899999999987542 0
Q ss_pred H---HHhhhChhHHHHHHHH---hhh-hcCCCCeEEEEEeccccccCCCCC-----hhh-HHHHHHHHHHHHHhCCCCCC
Q 011895 84 L---SKAAADQSFTDNWVQA---NIS-KYYPATKIEAVAVGNEVFADPKNT-----TPF-LVPAMKNVYNSLVKYKLDSN 150 (475)
Q Consensus 84 l---~~la~~~~~a~~wv~~---~v~-~~~p~~~I~~I~VGNEvl~~~~~~-----~~~-L~~am~nv~~aL~~~gl~~~ 150 (475)
. ...........+|+++ .|. .|-....|.++=+.||+....... ... +...++.+.+++|+.+-...
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~ 167 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHL 167 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcce
Confidence 0 0011122223344333 233 332345578999999998864321 124 88999999999999987644
Q ss_pred eEEe
Q 011895 151 VKVS 154 (475)
Q Consensus 151 IkVs 154 (475)
|-|+
T Consensus 168 i~~~ 171 (281)
T PF00150_consen 168 IIVG 171 (281)
T ss_dssp EEEE
T ss_pred eecC
Confidence 4343
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.17 E-value=0.035 Score=55.00 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=54.2
Q ss_pred HHHHHHHcCCCCceEEEeeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCC
Q 011895 246 VFAAMSAISYNDVKVVVTETGWPSVGDENEAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGP 324 (475)
Q Consensus 246 v~~A~~k~g~~~~~vvVtETGWPS~G~~~~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~ 324 (475)
+...|++++--+++|+|||.+-|..+ +.+.|+.|++.+++.+.+. |. ...+++..+.|. .|.++
T Consensus 171 ~~~~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~~~l~~~~~~---p~----v~gi~~Wg~~d~~~W~~~- 235 (254)
T smart00633 171 IRAALDRFASLGLEIQITELDISGYP-------NPQAQAADYEEVFKACLAH---PA----VTGVTVWGVTDKYSWLDG- 235 (254)
T ss_pred HHHHHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHHHHHHHHHcC---CC----eeEEEEeCCccCCcccCC-
Confidence 33444444434799999999988752 3488899999999988752 21 234666666664 36543
Q ss_pred CCCccccccCCCCCeeee
Q 011895 325 TSERNYGLFYPNEQTVYD 342 (475)
Q Consensus 325 ~~E~~wGlf~~d~~~ky~ 342 (475)
.+-|||+.|++||-.
T Consensus 236 ---~~~~L~d~~~~~kpa 250 (254)
T smart00633 236 ---GAPLLFDANYQPKPA 250 (254)
T ss_pred ---CCceeECCCCCCChh
Confidence 467999999988743
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.89 E-value=0.052 Score=53.49 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=46.2
Q ss_pred ceEEEeeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCCCCCCCCCCccccccCCCC
Q 011895 258 VKVVVTETGWPSVGDENEAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKPGPTSERNYGLFYPNE 337 (475)
Q Consensus 258 ~~vvVtETGWPS~G~~~~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~yiF~lFDE~~K~g~~~E~~wGlf~~d~ 337 (475)
+||+|||.|+...+ ...+.+.++.|.+..+..+.+. +. --.++||. |...+. ....+-.|++.||
T Consensus 166 kPIWITEf~~~~~~----~~~~~~~~~~fl~~~~~~ld~~------~~-VeryawF~-~~~~~~---~~~~~~~L~~~~G 230 (239)
T PF11790_consen 166 KPIWITEFGCWNGG----SQGSDEQQASFLRQALPWLDSQ------PY-VERYAWFG-FMNDGS---GVNPNSALLDADG 230 (239)
T ss_pred CCEEEEeecccCCC----CCCCHHHHHHHHHHHHHHHhcC------CC-eeEEEecc-cccccC---CCccccccccCCC
Confidence 99999999987722 2388899999999999998642 22 34578888 333222 3455666777776
Q ss_pred C
Q 011895 338 Q 338 (475)
Q Consensus 338 ~ 338 (475)
+
T Consensus 231 ~ 231 (239)
T PF11790_consen 231 S 231 (239)
T ss_pred C
Confidence 4
No 12
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=91.31 E-value=1.5 Score=44.23 Aligned_cols=96 Identities=18% Similarity=0.172 Sum_probs=56.8
Q ss_pred ceeEEecCCCC---CCCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHhhcCCCeEEEecCcch---HHH------h
Q 011895 25 KVGINYGRVAN---NLPSPEKV---VELLKSQRIDRVKTYD--TDSAVLAALANSDISVVVAFPNEE---LSK------A 87 (475)
Q Consensus 25 ~~GvnYg~~~~---n~ps~~~v---~~llk~~~~~~VRlY~--~d~~vL~A~~~tgi~V~lGv~n~~---l~~------l 87 (475)
..|||+..... ...+.+.+ ++++|..|++.||+.. .++..+.++...||-|+..++... ... .
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 46999877533 24555555 4578889999999963 457999999999999998876410 000 0
Q ss_pred hhCh---hHHHHHHHHhhhhcCCCCeEEEEEecccc
Q 011895 88 AADQ---SFTDNWVQANISKYYPATKIEAVAVGNEV 120 (475)
Q Consensus 88 a~~~---~~a~~wv~~~v~~~~p~~~I~~I~VGNEv 120 (475)
..++ ....+.+++.|..+.-.-.|..=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 1122 23445566777666433347788899998
No 13
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=85.35 E-value=43 Score=40.10 Aligned_cols=97 Identities=19% Similarity=0.190 Sum_probs=59.2
Q ss_pred eeEEecCCCC---CCCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHhhcCCCeEEEecCcc--h------HHHhhh
Q 011895 26 VGINYGRVAN---NLPSPEKV---VELLKSQRIDRVKTYD--TDSAVLAALANSDISVVVAFPNE--E------LSKAAA 89 (475)
Q Consensus 26 ~GvnYg~~~~---n~ps~~~v---~~llk~~~~~~VRlY~--~d~~vL~A~~~tgi~V~lGv~n~--~------l~~la~ 89 (475)
.|+|+-.... ...+++++ ++++|+.|++.||+-. .++..+.++-..||-|+--++.+ . ...+..
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 5888644321 23455554 5678889999999863 24678999999999988754211 0 001112
Q ss_pred Ch---hHHHHHHHHhhhhcCCCCeEEEEEecccccc
Q 011895 90 DQ---SFTDNWVQANISKYYPATKIEAVAVGNEVFA 122 (475)
Q Consensus 90 ~~---~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~ 122 (475)
++ ....+.++..|....-.-.|..=++|||.-.
T Consensus 417 ~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 417 DPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 22 1223445666666543445788888999743
No 14
>PRK09936 hypothetical protein; Provisional
Probab=84.29 E-value=24 Score=36.00 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=71.6
Q ss_pred ceeEEecCCCCC-CCCHHHHHHH---HHhCCCCEEEEe-----cCC--------hHHHHHhhcCCCeEEEecCcch--HH
Q 011895 25 KVGINYGRVANN-LPSPEKVVEL---LKSQRIDRVKTY-----DTD--------SAVLAALANSDISVVVAFPNEE--LS 85 (475)
Q Consensus 25 ~~GvnYg~~~~n-~ps~~~v~~l---lk~~~~~~VRlY-----~~d--------~~vL~A~~~tgi~V~lGv~n~~--l~ 85 (475)
..|+=|-|...| --++++-.++ ++..|++.+=+= +.| .+.|+++...||+|.||++-|. -.
T Consensus 21 ~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y~q 100 (296)
T PRK09936 21 MKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADPEFFM 100 (296)
T ss_pred cccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCChHHHH
Confidence 467779999877 5677776554 455788765442 223 4678888999999999997542 22
Q ss_pred HhhhChhHHHHHHHHhhhhc---------CCCCeEEEEEeccccc-cCC-CCChhh-HHHHHHHHHHHHHhCCCCCCeEE
Q 011895 86 KAAADQSFTDNWVQANISKY---------YPATKIEAVAVGNEVF-ADP-KNTTPF-LVPAMKNVYNSLVKYKLDSNVKV 153 (475)
Q Consensus 86 ~la~~~~~a~~wv~~~v~~~---------~p~~~I~~I~VGNEvl-~~~-~~~~~~-L~~am~nv~~aL~~~gl~~~IkV 153 (475)
.+..|.+.-++|++.....- .+...+++--.-=|+= +.+ +...-. |+..++++.+.|... .++|.|
T Consensus 101 ~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~~~--~kPv~I 178 (296)
T PRK09936 101 HQKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLIDVS--AKPVHI 178 (296)
T ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCCCC--CCCeEE
Confidence 33233333344544422111 1223344333333432 121 111223 777888887776522 234655
Q ss_pred ecc
Q 011895 154 SSP 156 (475)
Q Consensus 154 sT~ 156 (475)
|+-
T Consensus 179 Say 181 (296)
T PRK09936 179 SAF 181 (296)
T ss_pred Eee
Confidence 543
No 15
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=83.91 E-value=0.5 Score=50.95 Aligned_cols=278 Identities=14% Similarity=0.230 Sum_probs=125.9
Q ss_pred HHHHHHHHHhCCCCEEEEe--------c-----CC-------hHHHHHhhcCCCeEEEecCcchHHH-h-----hhChhH
Q 011895 40 PEKVVELLKSQRIDRVKTY--------D-----TD-------SAVLAALANSDISVVVAFPNEELSK-A-----AADQSF 93 (475)
Q Consensus 40 ~~~v~~llk~~~~~~VRlY--------~-----~d-------~~vL~A~~~tgi~V~lGv~n~~l~~-l-----a~~~~~ 93 (475)
-+|.+++||+.|++..|+= + .| .++|..|...||+.+|.+.--+++. + ..+...
T Consensus 60 y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~ 139 (455)
T PF00232_consen 60 YKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRET 139 (455)
T ss_dssp HHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHH
T ss_pred hhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHH
Confidence 4567889999999998874 1 12 3688999999999999984222221 1 122222
Q ss_pred HHHHHHHh----hhhcCCCCeEEEEEeccccccC-------C----C-CC------hhh-HHHHHHHHHHHHHhCCCCCC
Q 011895 94 TDNWVQAN----ISKYYPATKIEAVAVGNEVFAD-------P----K-NT------TPF-LVPAMKNVYNSLVKYKLDSN 150 (475)
Q Consensus 94 a~~wv~~~----v~~~~p~~~I~~I~VGNEvl~~-------~----~-~~------~~~-L~~am~nv~~aL~~~gl~~~ 150 (475)
. +|+.+. +..| .++|+.-+.=||+..- + . .+ ... ++-|-..+.+++++....
T Consensus 140 ~-~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~-- 214 (455)
T PF00232_consen 140 V-DWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPD-- 214 (455)
T ss_dssp H-HHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCT--
T ss_pred H-HHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccc--
Confidence 2 222222 2333 3568888888998542 0 0 01 112 455555556666665533
Q ss_pred eEEecccccccccc--cC---------------------CCCCccccCccc---------hhhhhhHHHHHHhcCCccee
Q 011895 151 VKVSSPIALGALQN--SY---------------------PPSSGSFKSDLI---------EPALKPMLEFLRKTSSYLMV 198 (475)
Q Consensus 151 IkVsT~~~~~vl~~--s~---------------------pPS~g~F~~~~~---------~~~l~~~ldfL~~t~sp~~v 198 (475)
.+|+.++......- .. |--.|.|...+. ...-..-+..|..+.|++++
T Consensus 215 ~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGi 294 (455)
T PF00232_consen 215 GKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGI 294 (455)
T ss_dssp SEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEE
T ss_pred eEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhh
Confidence 45665554332110 00 000111110000 00001123445677888999
Q ss_pred ccCCccccccCC-Cccccccc---cccC--CCCcccCCCCc-ccccHHHHHHHHHHHHHHHcCCCCceEEEeeecCCCCC
Q 011895 199 NAYPFFAYSANA-DKISLDYA---LFRD--NPGQVDSGNGL-KYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVG 271 (475)
Q Consensus 199 NiyPyf~~~~~p-~~i~l~yA---lf~~--~~~~~d~~~~~-~Y~nlfda~~dav~~A~~k~g~~~~~vvVtETGWPS~G 271 (475)
|-|.=.--...+ ......+. .+.. +........+. .|-.-+-.++.-++ ++ |++++|+|||.|++...
T Consensus 295 NYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~l~---~~--Y~~~pI~ITENG~~~~~ 369 (455)
T PF00232_consen 295 NYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVLRYLK---DR--YGNPPIYITENGIGDPD 369 (455)
T ss_dssp EESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHHHHHH---HH--HTSSEEEEEEE---EET
T ss_pred ccccceeeccCccccccccccCCccccccccccccccccCcccccchHhhhhhhhc---cc--cCCCcEEEecccccccc
Confidence 987533222222 11111111 0100 00000011111 11111222222221 22 67899999999998876
Q ss_pred CCCCCCCCH----HHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCC-CCCCCCCCccccccCCC
Q 011895 272 DENEAGAGA----ANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNEN-QKPGPTSERNYGLFYPN 336 (475)
Q Consensus 272 ~~~~~~as~----~na~~y~~~li~~~~~~~Gtp~rpg~~~~~yiF~lFDE~-~K~g~~~E~~wGlf~~d 336 (475)
......--- +--+.+++.+.+.+. .|-+. .-+|..++.|-- |.. +..+.|||++.|
T Consensus 370 ~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~--dGv~V-----~GY~~WSl~Dn~Ew~~--Gy~~rfGl~~VD 430 (455)
T PF00232_consen 370 EVDDGKVDDDYRIDYLQDHLNQVLKAIE--DGVNV-----RGYFAWSLLDNFEWAE--GYKKRFGLVYVD 430 (455)
T ss_dssp TCTTSHBSHHHHHHHHHHHHHHHHHHHH--TT-EE-----EEEEEETSB---BGGG--GGGSE--SEEEE
T ss_pred cccccCcCcHHHHHHHHHHHHHHHhhhc--cCCCe-----eeEeeecccccccccc--CccCccCceEEc
Confidence 532211111 223444444444443 45432 347888888853 544 478999999999
No 16
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=80.53 E-value=6.7 Score=41.01 Aligned_cols=134 Identities=13% Similarity=0.242 Sum_probs=74.1
Q ss_pred CCCCEEEEecC-ChHHHHHhhcCCCeEEEecCcchHHHhhhChhHHHHHHHHhhhhcCCCCeEEEEEeccccccCCCCCh
Q 011895 50 QRIDRVKTYDT-DSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTT 128 (475)
Q Consensus 50 ~~~~~VRlY~~-d~~vL~A~~~tgi~V~lGv~n~~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~ 128 (475)
..+++|-+|+. |++++..+...|++|++..... .+ ...++..-..+++..| .+...-.+.+|-+==|-....+...
T Consensus 54 ~~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~-~l~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d 130 (358)
T cd02875 54 SKVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LE-QISNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPE 130 (358)
T ss_pred ccceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HH-HcCCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcch
Confidence 34788998864 7899999999999999864321 12 2235444444555433 2221123455555444332211122
Q ss_pred hh-HHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCcccc-CccchhhhhhHHHHHHhcCCcceeccCCcc
Q 011895 129 PF-LVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFK-SDLIEPALKPMLEFLRKTSSYLMVNAYPFF 204 (475)
Q Consensus 129 ~~-L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~-~~~~~~~l~~~ldfL~~t~sp~~vNiyPyf 204 (475)
.. ++..|+++|++|++.+..-.|.|.++ +. |+....+ -|+ +.|.+.+||+ .|-.|=|.
T Consensus 131 ~~~~t~llkelr~~l~~~~~~~~Lsvav~--~~-------p~~~~~~~yd~--~~l~~~vD~v-------~lMtYD~h 190 (358)
T cd02875 131 YYALTELVKETTKAFKKENPGYQISFDVA--WS-------PSCIDKRCYDY--TGIADASDFL-------VVMDYDEQ 190 (358)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEEe--cC-------cccccccccCH--HHHHhhCCEe-------eEEeeccc
Confidence 33 88999999999998764323433332 11 2111110 122 3466777776 77777664
No 17
>TIGR03356 BGL beta-galactosidase.
Probab=75.06 E-value=8.5 Score=41.28 Aligned_cols=77 Identities=13% Similarity=0.256 Sum_probs=45.0
Q ss_pred CCCceEEEeeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh--CCCCCCCCCCCccEEEEEecCC-CCCCCCCCCcccc
Q 011895 255 YNDVKVVVTETGWPSVGDENEAGAGAANAAAYNGNLVRRVLS--GSGTPLRPKDPLNVYLFALFNE-NQKPGPTSERNYG 331 (475)
Q Consensus 255 ~~~~~vvVtETGWPS~G~~~~~~as~~na~~y~~~li~~~~~--~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E~~wG 331 (475)
|++.+|+|||.|+..........-.-+.-..|++.-++.+.. ..|-+. .-++.-++.|- .|.. +.++.||
T Consensus 335 Y~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v-----~GY~~Wsl~Dn~ew~~--gy~~rfG 407 (427)
T TIGR03356 335 YPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDV-----RGYFVWSLLDNFEWAE--GYSKRFG 407 (427)
T ss_pred cCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCE-----EEEEecccccccchhc--ccccccc
Confidence 555689999999975431110001112233344444443321 246553 34778888885 3654 4899999
Q ss_pred ccCCCCC
Q 011895 332 LFYPNEQ 338 (475)
Q Consensus 332 lf~~d~~ 338 (475)
|++.|..
T Consensus 408 l~~VD~~ 414 (427)
T TIGR03356 408 LVHVDYE 414 (427)
T ss_pred eEEECCC
Confidence 9999876
No 18
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=74.89 E-value=12 Score=39.06 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=51.2
Q ss_pred HHHHHHHHHhCCCCEEEEecC-------C---------hHHHHHhhcCCCeEEEecCcchHH--------H---------
Q 011895 40 PEKVVELLKSQRIDRVKTYDT-------D---------SAVLAALANSDISVVVAFPNEELS--------K--------- 86 (475)
Q Consensus 40 ~~~v~~llk~~~~~~VRlY~~-------d---------~~vL~A~~~tgi~V~lGv~n~~l~--------~--------- 86 (475)
-++.++++|..|++.|||... . -.+|..++..||+|+|+++....+ .
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~ 91 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGR 91 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTS
T ss_pred HHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCC
Confidence 355677888899999997421 1 357888899999999998532100 0
Q ss_pred ---------hhh-C---hhHHHHHHHHhhhhcCCCCeEEEEEecccccc
Q 011895 87 ---------AAA-D---QSFTDNWVQANISKYYPATKIEAVAVGNEVFA 122 (475)
Q Consensus 87 ---------la~-~---~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~ 122 (475)
..- + ...+...+++.+..|-..-.|.++-|+||.-.
T Consensus 92 ~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 92 RRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp BEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 000 0 12344555555555654457999999999866
No 19
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=61.57 E-value=25 Score=27.01 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHhhcCCCeEEEecC
Q 011895 37 LPSPEKVVELLKSQRIDRVKTYDTD-----SAVLAALANSDISVVVAFP 80 (475)
Q Consensus 37 ~ps~~~v~~llk~~~~~~VRlY~~d-----~~vL~A~~~tgi~V~lGv~ 80 (475)
.-+++++++.++.+|++.|=+=|-+ ....+.++..||+|+.|+.
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E 62 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLE 62 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEE
Confidence 3468899999999999999887766 4556667789999999984
No 20
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=60.99 E-value=1e+02 Score=28.71 Aligned_cols=87 Identities=13% Similarity=0.064 Sum_probs=45.0
Q ss_pred HHHHHhhcCCCeEEEecCcc-hHHHhhhChhHH---HHHHHHhh-hhcCCCCeEEEEEeccccccCCCCChhhHHHHHHH
Q 011895 63 AVLAALANSDISVVVAFPNE-ELSKAAADQSFT---DNWVQANI-SKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKN 137 (475)
Q Consensus 63 ~vL~A~~~tgi~V~lGv~n~-~l~~la~~~~~a---~~wv~~~v-~~~~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~n 137 (475)
.+|+++...||+|.||++.+ .--. ..+.+.. ..-|.+-+ ..|.....+.+--+-.|+-... .....+.+.
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~~~~~w~-~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYFDPDYWD-QGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred HHHHHHHHcCCEEEEeCCCCchhhh-ccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcc----cchHHHHHH
Confidence 57889999999999999743 1000 0111111 01122222 2343234577777777774432 224556666
Q ss_pred HHHHHHhCCCCCCeEEe
Q 011895 138 VYNSLVKYKLDSNVKVS 154 (475)
Q Consensus 138 v~~aL~~~gl~~~IkVs 154 (475)
+.+.|++..-+.+|-|+
T Consensus 144 l~~~lk~~s~~~Pv~IS 160 (166)
T PF14488_consen 144 LGKYLKQISPGKPVMIS 160 (166)
T ss_pred HHHHHHHhCCCCCeEEe
Confidence 66666654323334333
No 21
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=57.31 E-value=38 Score=36.86 Aligned_cols=75 Identities=19% Similarity=0.342 Sum_probs=45.0
Q ss_pred CCC-ceEEEeeecCCCCCCCC--CCC---CCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCC
Q 011895 255 YND-VKVVVTETGWPSVGDEN--EAG---AGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSE 327 (475)
Q Consensus 255 ~~~-~~vvVtETGWPS~G~~~--~~~---as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E 327 (475)
|++ .+|+|||.|+....... +.. -=++--+.+++.+.+.+. .|.+.| -+|.-++.|- .|..| .+
T Consensus 365 Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~--dGv~v~-----GY~~WSl~DnfEW~~G--y~ 435 (469)
T PRK13511 365 YPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAIS--DGANVK-----GYFIWSLMDVFSWSNG--YE 435 (469)
T ss_pred cCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHH--cCCCEE-----EEeecccccccchhcC--cc
Confidence 555 57999999997543211 000 112233344444444442 566543 4788888885 36654 89
Q ss_pred ccccccCCCCC
Q 011895 328 RNYGLFYPNEQ 338 (475)
Q Consensus 328 ~~wGlf~~d~~ 338 (475)
+.|||++.|.+
T Consensus 436 ~RfGl~~VD~~ 446 (469)
T PRK13511 436 KRYGLFYVDFE 446 (469)
T ss_pred CccceEEECCC
Confidence 99999999875
No 22
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=55.74 E-value=65 Score=32.60 Aligned_cols=82 Identities=9% Similarity=0.066 Sum_probs=49.5
Q ss_pred hHHHHHhhcCCCeEEEecCcc--------hHHHhhhChhHHHHHHHHhhhhcCCCCeEEEEEeccccccCCCCChhh-HH
Q 011895 62 SAVLAALANSDISVVVAFPNE--------ELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPF-LV 132 (475)
Q Consensus 62 ~~vL~A~~~tgi~V~lGv~n~--------~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~-L~ 132 (475)
+.++.+++..++||++.|.+. ....+.+++..-...+ ++|..+...-.+.+|-+-=|.+.. +... .+
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi-~~iv~~l~~~~~DGidiDwE~~~~---~d~~~~~ 123 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLI-NNILALAKKYGYDGVNIDFENVPP---EDREAYT 123 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHhCCCcEEEecccCCH---HHHHHHH
Confidence 678888888899999888542 2344555544333333 333333221234566654455432 2233 89
Q ss_pred HHHHHHHHHHHhCCC
Q 011895 133 PAMKNVYNSLVKYKL 147 (475)
Q Consensus 133 ~am~nv~~aL~~~gl 147 (475)
..|+.+|.+|++.|+
T Consensus 124 ~fl~~lr~~l~~~~~ 138 (313)
T cd02874 124 QFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHhhhcCc
Confidence 999999999987764
No 23
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=54.86 E-value=15 Score=34.35 Aligned_cols=38 Identities=16% Similarity=0.310 Sum_probs=27.4
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEEecC
Q 011895 43 VVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFP 80 (475)
Q Consensus 43 v~~llk~~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv~ 80 (475)
-+|.|+..|+++||+.+.+|.-+.++.+.||+|.=-||
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 46899999999999999999999999999999975443
No 24
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=54.03 E-value=55 Score=33.85 Aligned_cols=76 Identities=13% Similarity=0.200 Sum_probs=41.2
Q ss_pred cCCCeEEEecC--c---chHHHhhhChhHHHHHHHHhhhhcCCCCeEEEEEeccccccC--CCCChhh-HHHHHHHHHHH
Q 011895 70 NSDISVVVAFP--N---EELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFAD--PKNTTPF-LVPAMKNVYNS 141 (475)
Q Consensus 70 ~tgi~V~lGv~--n---~~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~--~~~~~~~-L~~am~nv~~a 141 (475)
+.++||++.|. + +....++++.......++..| .+...-.+.+|-+==|-... ....... ++..|+.+|++
T Consensus 68 ~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~iv-~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~ 146 (362)
T cd02872 68 NPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSAI-AFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREA 146 (362)
T ss_pred CCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHHHH-HHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHH
Confidence 46899998883 2 134556666554444444332 22211234455443332221 0112233 89999999999
Q ss_pred HHhCC
Q 011895 142 LVKYK 146 (475)
Q Consensus 142 L~~~g 146 (475)
|++.+
T Consensus 147 l~~~~ 151 (362)
T cd02872 147 FEPEA 151 (362)
T ss_pred HHhhC
Confidence 99873
No 25
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.14 E-value=51 Score=34.74 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=46.8
Q ss_pred cccHHHHHHHHHHHHHHHcCCCCceEEEeeecCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEE
Q 011895 235 YTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGDENE---AGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVY 311 (475)
Q Consensus 235 Y~nlfda~~dav~~A~~k~g~~~~~vvVtETGWPS~G~~~~---~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y 311 (475)
|.|-|++-+-.....+.-.|++.++|+.+ |||.|..-+ .-.|-+-++.-+.++++.++...+ ..++|
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~-------~~~I~ 194 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATDKP-------VKRIY 194 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCCC-------CceEE
Confidence 56667765555544556678888999987 999998632 226666667777788888875322 23566
Q ss_pred EEE
Q 011895 312 LFA 314 (475)
Q Consensus 312 iF~ 314 (475)
+++
T Consensus 195 ilA 197 (377)
T COG4782 195 LLA 197 (377)
T ss_pred EEE
Confidence 665
No 26
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=48.51 E-value=26 Score=33.42 Aligned_cols=33 Identities=15% Similarity=0.403 Sum_probs=30.3
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCCeEE
Q 011895 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVV 76 (475)
Q Consensus 44 ~~llk~~~~~~VRlY~~d~~vL~A~~~tgi~V~ 76 (475)
+|.|+..|+++||+....+.-+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999998888889999999987
No 27
>PLN03059 beta-galactosidase; Provisional
Probab=48.06 E-value=3.2e+02 Score=32.17 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=89.3
Q ss_pred hhhhhhHHHHHHHHHhhhcCCCceeEEecCCC---C-----------C--CCCHHH---HHHHHHhCCCCEEEEecC---
Q 011895 3 TLAAFSSFFFFFLVTFAFADTGKVGINYGRVA---N-----------N--LPSPEK---VVELLKSQRIDRVKTYDT--- 60 (475)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~GvnYg~~~---~-----------n--~ps~~~---v~~llk~~~~~~VRlY~~--- 60 (475)
+|.-|++++|++||+.+...-....|.|..+. + + -.+|+. .++.+|..|++.|-+|-.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~ 84 (840)
T PLN03059 5 SLVVFLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNG 84 (840)
T ss_pred ceehhhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccc
Confidence 34556666666666555554444578887541 1 1 224444 456677899999999832
Q ss_pred --------C-------hHHHHHhhcCCCeEEEec-------------Ccch--HHH--hh-hCh---hHHHHHHHHhhhh
Q 011895 61 --------D-------SAVLAALANSDISVVVAF-------------PNEE--LSK--AA-ADQ---SFTDNWVQANISK 104 (475)
Q Consensus 61 --------d-------~~vL~A~~~tgi~V~lGv-------------~n~~--l~~--la-~~~---~~a~~wv~~~v~~ 104 (475)
| ..-|+.++..||.|+|=. |.-. .+. +- .++ .+.++|+...+..
T Consensus 85 HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~ 164 (840)
T PLN03059 85 HEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDM 164 (840)
T ss_pred cCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 1 345778889999999843 1100 010 11 121 2456676654422
Q ss_pred c------C-CCCeEEEEEeccccccCCCCCh-hhHHHHHHHHHHHHHhCCCCCCeEEecccc
Q 011895 105 Y------Y-PATKIEAVAVGNEVFADPKNTT-PFLVPAMKNVYNSLVKYKLDSNVKVSSPIA 158 (475)
Q Consensus 105 ~------~-p~~~I~~I~VGNEvl~~~~~~~-~~L~~am~nv~~aL~~~gl~~~IkVsT~~~ 158 (475)
. + ....|..+=|-||-=.- +... ..=-.+|+.+++.++++|++ |+.-|.+.
T Consensus 165 l~~~~l~~~~GGPIImvQIENEYGs~-~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl~t~dg 223 (840)
T PLN03059 165 MKSEKLFEPQGGPIILSQIENEYGPV-EWEIGAPGKAYTKWAADMAVKLGTG--VPWVMCKQ 223 (840)
T ss_pred HhhcceeecCCCcEEEEEecccccce-ecccCcchHHHHHHHHHHHHHcCCC--cceEECCC
Confidence 1 1 23679999999995221 0011 11467999999999999985 66655543
No 28
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=47.57 E-value=27 Score=33.48 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=30.5
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCCeEE
Q 011895 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVV 76 (475)
Q Consensus 44 ~~llk~~~~~~VRlY~~d~~vL~A~~~tgi~V~ 76 (475)
+|.|+..|+++||+.+..+.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999998878889999999997
No 29
>PLN02998 beta-glucosidase
Probab=47.36 E-value=53 Score=36.09 Aligned_cols=75 Identities=17% Similarity=0.308 Sum_probs=45.5
Q ss_pred CCCceEEEeeecCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCCccccc
Q 011895 255 YNDVKVVVTETGWPSVGDE-NEAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSERNYGL 332 (475)
Q Consensus 255 ~~~~~vvVtETGWPS~G~~-~~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E~~wGl 332 (475)
|++.+|+|||-|+....+. -...-=++--+.+++.+.+.+. .|.+. .-+|.-++.|- .|..| .++.|||
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~--dGv~V-----~GY~~WSl~DnfEW~~G--y~~RfGL 460 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLR--KGSDV-----KGYFQWSLMDVFELFGG--YERSFGL 460 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchhhhchhcc--ccCccce
Confidence 5555899999999765311 0011122333444555555543 46553 24777788874 36554 8999999
Q ss_pred cCCCCC
Q 011895 333 FYPNEQ 338 (475)
Q Consensus 333 f~~d~~ 338 (475)
++.|..
T Consensus 461 v~VD~~ 466 (497)
T PLN02998 461 LYVDFK 466 (497)
T ss_pred EEECCC
Confidence 998765
No 30
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=45.01 E-value=46 Score=36.63 Aligned_cols=75 Identities=15% Similarity=0.338 Sum_probs=51.9
Q ss_pred CCCCceEEEeeecCCCCCCCC---C----CCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCC-CCCCCC
Q 011895 254 SYNDVKVVVTETGWPSVGDEN---E----AGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNEN-QKPGPT 325 (475)
Q Consensus 254 g~~~~~vvVtETGWPS~G~~~---~----~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~yiF~lFDE~-~K~g~~ 325 (475)
.|++.+|.|+|-|-+...+.. + ...=++..+.|++.+.+.+.. .|.- ..-+|..+|-|-- |..|
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgvn-----v~GYf~WSLmDnfEw~~G-- 475 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGVN-----VKGYFVWSLLDNFEWLDG-- 475 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCCc-----eeeEEEeEcccchhhhcC--
Confidence 488999999999988865432 1 124456667777777776652 3442 2358999999853 7664
Q ss_pred CCccccccCCC
Q 011895 326 SERNYGLFYPN 336 (475)
Q Consensus 326 ~E~~wGlf~~d 336 (475)
..-.|||++.|
T Consensus 476 y~~RFGlyyVD 486 (524)
T KOG0626|consen 476 YKVRFGLYYVD 486 (524)
T ss_pred cccccccEEEe
Confidence 67889999864
No 31
>PLN02814 beta-glucosidase
Probab=44.05 E-value=65 Score=35.44 Aligned_cols=75 Identities=19% Similarity=0.409 Sum_probs=45.0
Q ss_pred CCCceEEEeeecCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCCccccc
Q 011895 255 YNDVKVVVTETGWPSVGDEN-EAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSERNYGL 332 (475)
Q Consensus 255 ~~~~~vvVtETGWPS~G~~~-~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E~~wGl 332 (475)
|++.+|+|||-|+....+.. ...-=++--+.+++.+.+.+. .|.|.| -+|.-++.|- .|.. +.++.|||
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~--dGv~V~-----GY~~WSllDnfEW~~--Gy~~RfGL 455 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIK--NGSDTR-----GYFVWSMIDLYELLG--GYTTSFGM 455 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCEE-----EEeeccchhhhchhc--cccCccce
Confidence 55668999999997542110 001112333344444444443 466543 4778888884 3654 48999999
Q ss_pred cCCCCC
Q 011895 333 FYPNEQ 338 (475)
Q Consensus 333 f~~d~~ 338 (475)
++.|..
T Consensus 456 vyVD~~ 461 (504)
T PLN02814 456 YYVNFS 461 (504)
T ss_pred EEECCC
Confidence 998865
No 32
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=43.68 E-value=2e+02 Score=28.97 Aligned_cols=138 Identities=17% Similarity=0.208 Sum_probs=68.4
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEecCC-------hHHHHH---hhcCCCeEEEecCcchHHH--hhhChhHHHHHHHHhhh
Q 011895 36 NLPSPEKVVELLKSQRIDRVKTYDTD-------SAVLAA---LANSDISVVVAFPNEELSK--AAADQSFTDNWVQANIS 103 (475)
Q Consensus 36 n~ps~~~v~~llk~~~~~~VRlY~~d-------~~vL~A---~~~tgi~V~lGv~n~~l~~--la~~~~~a~~wv~~~v~ 103 (475)
+.+++.++++.|+..|+++|-+-... ..+++. ++..--++.+|-|- |.. .-.+.+.. .-+.+.+.
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PL--L~~~g~~~~~~D~-~~va~aL~ 132 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPL--LYTMGQENSPEDY-EAVAEALA 132 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--S--CSS-----SHHHH-HHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccc--cccccccCChHHH-HHHHHHHH
Confidence 57999999999999999999998776 234443 34444588999872 110 00011111 11223333
Q ss_pred hcCC----CCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCccccCccch
Q 011895 104 KYYP----ATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIE 179 (475)
Q Consensus 104 ~~~p----~~~I~~I~VGNEvl~~~~~~~~~L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~ 179 (475)
.-+| +..+..+-=||+- ... ..-..++..|++.++.+ |-|+|.+. +|
T Consensus 133 ~~~~~~~~~~a~vlmGHGt~h-------~an--~~Y~~l~~~l~~~~~~~-v~vgtvEG-------~P------------ 183 (262)
T PF06180_consen 133 EEFPKKRKDEAVVLMGHGTPH-------PAN--AAYSALQAMLKKHGYPN-VFVGTVEG-------YP------------ 183 (262)
T ss_dssp CCS-TT-TTEEEEEEE---SC-------HHH--HHHHHHHHHHHCCT-TT-EEEEETTS-------SS------------
T ss_pred HhccccCCCCEEEEEeCCCCC-------Ccc--HHHHHHHHHHHhCCCCe-EEEEEeCC-------CC------------
Confidence 3333 3334444444432 122 23445567788887764 88999863 32
Q ss_pred hhhhhHHHHHHhcCCcceeccCCccccc
Q 011895 180 PALKPMLEFLRKTSSYLMVNAYPFFAYS 207 (475)
Q Consensus 180 ~~l~~~ldfL~~t~sp~~vNiyPyf~~~ 207 (475)
.+..++..|.+.+ +=-|.+.||.--.
T Consensus 184 -~~~~vi~~L~~~g-~k~V~L~PlMlVA 209 (262)
T PF06180_consen 184 -SLEDVIARLKKKG-IKKVHLIPLMLVA 209 (262)
T ss_dssp -BHHHHHHHHHHHT--SEEEEEEESSS-
T ss_pred -CHHHHHHHHHhcC-CCeEEEEeccccc
Confidence 2556677776654 2248888988644
No 33
>PLN02849 beta-glucosidase
Probab=43.63 E-value=76 Score=34.95 Aligned_cols=75 Identities=20% Similarity=0.303 Sum_probs=45.4
Q ss_pred CCCceEEEeeecCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCCccc
Q 011895 255 YNDVKVVVTETGWPSVGDENEA---GAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSERNY 330 (475)
Q Consensus 255 ~~~~~vvVtETGWPS~G~~~~~---~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E~~w 330 (475)
|++.||+|||-|++......+. .-=++--+.+++.+.+.+. .|.+. .-+|..++.|- .|.. +.++.|
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~--dGv~V-----~GY~~WSl~DnfEW~~--Gy~~Rf 453 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVR--NGSDT-----RGYFVWSFMDLYELLK--GYEFSF 453 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchhhhchhc--cccCcc
Confidence 5556899999999865421110 0112333344444444442 46543 24777888875 3654 489999
Q ss_pred cccCCCCC
Q 011895 331 GLFYPNEQ 338 (475)
Q Consensus 331 Glf~~d~~ 338 (475)
||++.|..
T Consensus 454 GLi~VD~~ 461 (503)
T PLN02849 454 GLYSVNFS 461 (503)
T ss_pred ceEEECCC
Confidence 99998865
No 34
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=43.22 E-value=1.2e+02 Score=36.48 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=60.2
Q ss_pred ceeEEecCCCC---CCCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHhhcCCCeEEEecCcch-----HHHhhhCh
Q 011895 25 KVGINYGRVAN---NLPSPEKV---VELLKSQRIDRVKTYD--TDSAVLAALANSDISVVVAFPNEE-----LSKAAADQ 91 (475)
Q Consensus 25 ~~GvnYg~~~~---n~ps~~~v---~~llk~~~~~~VRlY~--~d~~vL~A~~~tgi~V~lGv~n~~-----l~~la~~~ 91 (475)
..|+|+-.... ...+++++ ++++|..|++.||+-. .++..+..+-..||-|+--++.+. ...+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 35888754322 23566665 4577889999999943 357899999999999887654210 00111222
Q ss_pred ---hHHHHHHHHhhhhcCCCCeEEEEEeccccc
Q 011895 92 ---SFTDNWVQANISKYYPATKIEAVAVGNEVF 121 (475)
Q Consensus 92 ---~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl 121 (475)
.+..+.+++.|....-.-.|..=++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 123344555666554344588889999964
No 35
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=41.90 E-value=66 Score=30.82 Aligned_cols=118 Identities=17% Similarity=0.253 Sum_probs=67.7
Q ss_pred HHHHHHHHhhhhcCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCcc
Q 011895 93 FTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGS 172 (475)
Q Consensus 93 ~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~ 172 (475)
...+|+.+.+..+ +...+....+= ....-.+++.+...+...|+.+ |++.+.....
T Consensus 56 ~~n~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~G-v~l~~~~~~~------------ 111 (273)
T PF04909_consen 56 GFNDWLVELAAKH-PDRFIGFAAIP----------PPDPEDAVEELERALQELGFRG-VKLHPDLGGF------------ 111 (273)
T ss_dssp HHHHHHHHHHHHS-TTTEEEEEEET----------TTSHHHHHHHHHHHHHTTTESE-EEEESSETTC------------
T ss_pred HHHHHHHHHHHHc-CCCEEEEEEec----------CCCchhHHHHHHHhccccceee-eEecCCCCcc------------
Confidence 3456776666665 33333333321 0113468888889998999887 8877643211
Q ss_pred ccCccchhhhh-hHHHHHHhcCCcceeccC-CccccccCCCccccccccccCCCCcccCCCCcccccHHHHHHHHHHHHH
Q 011895 173 FKSDLIEPALK-PMLEFLRKTSSYLMVNAY-PFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAM 250 (475)
Q Consensus 173 F~~~~~~~~l~-~~ldfL~~t~sp~~vNiy-Pyf~~~~~p~~i~l~yAlf~~~~~~~d~~~~~~Y~nlfda~~dav~~A~ 250 (475)
..+ ++.+. ++++.+.+.+-|+.+++- +.+... ..-..+...+...+
T Consensus 112 -~~~--~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~-----------------------------~~~~~~~~~~~~~~ 159 (273)
T PF04909_consen 112 -DPD--DPRLDDPIFEAAEELGLPVLIHTGMTGFPDA-----------------------------PSDPADPEELEELL 159 (273)
T ss_dssp -CTT--SGHCHHHHHHHHHHHT-EEEEEESHTHHHHH-----------------------------HHHHHHHHHHTTHH
T ss_pred -ccc--cHHHHHHHHHHHHhhccceeeeccccchhhh-----------------------------hHHHHHHHHHHHHH
Confidence 111 12344 899999999998888853 111100 01112222333344
Q ss_pred HHcCCCCceEEEeeecCC
Q 011895 251 SAISYNDVKVVVTETGWP 268 (475)
Q Consensus 251 ~k~g~~~~~vvVtETGWP 268 (475)
++ +++++|++.+.|+|
T Consensus 160 ~~--~P~l~ii~~H~G~~ 175 (273)
T PF04909_consen 160 ER--FPDLRIILAHLGGP 175 (273)
T ss_dssp HH--STTSEEEESGGGTT
T ss_pred HH--hcCCeEEEecCccc
Confidence 44 79999999999999
No 36
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=40.34 E-value=1.2e+02 Score=32.36 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhCCC
Q 011895 131 LVPAMKNVYNSLVKYKL 147 (475)
Q Consensus 131 L~~am~nv~~aL~~~gl 147 (475)
++..|+.+|++|++.++
T Consensus 171 f~~Ll~elr~~l~~~~~ 187 (413)
T cd02873 171 FTALVRELKNALRPDGL 187 (413)
T ss_pred HHHHHHHHHHHhcccCc
Confidence 88899999999988765
No 37
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=40.03 E-value=56 Score=35.63 Aligned_cols=74 Identities=16% Similarity=0.342 Sum_probs=43.2
Q ss_pred ceEEEeeecCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCCcccc
Q 011895 258 VKVVVTETGWPSVGDENEAG-----AGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSERNYG 331 (475)
Q Consensus 258 ~~vvVtETGWPS~G~~~~~~-----as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E~~wG 331 (475)
+||+|||-|..........+ -=++--+.+++.+.+.+. ..|-+.| -+|.-++.|- .|..| ..++.||
T Consensus 368 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~-~dGv~V~-----GY~~WSl~Dn~Ew~~G-~y~~RfG 440 (476)
T PRK09589 368 LPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVV-EDGVDLM-----GYTPWGCIDLVSAGTG-EMKKRYG 440 (476)
T ss_pred CCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHH-hcCCCeE-----EEeeccccccccccCC-cccccee
Confidence 58999999997543211111 112223334444444431 2466543 4788888885 36543 3689999
Q ss_pred ccCCCCC
Q 011895 332 LFYPNEQ 338 (475)
Q Consensus 332 lf~~d~~ 338 (475)
|++.|..
T Consensus 441 lv~VD~~ 447 (476)
T PRK09589 441 FIYVDKD 447 (476)
T ss_pred eEEEcCC
Confidence 9999876
No 38
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=39.12 E-value=46 Score=36.34 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=44.3
Q ss_pred ceEEEeeecCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCCcccc
Q 011895 258 VKVVVTETGWPSVGDENEAG-----AGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSERNYG 331 (475)
Q Consensus 258 ~~vvVtETGWPS~G~~~~~~-----as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E~~wG 331 (475)
+||+|||-|..........+ -=++--+.+++.+.+.+. ..|.+.| -+|.-++.|- .|..| ..++.||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~-~dGv~v~-----GY~~WSl~Dn~EW~~G-~y~~RfG 441 (478)
T PRK09593 369 KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAIN-EDGVELL-----GYTTWGCIDLVSAGTG-EMKKRYG 441 (478)
T ss_pred CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCEE-----EEeeccchHhhcccCC-CccCeec
Confidence 58999999997644221111 112333444454444442 2465543 3777888875 36554 4789999
Q ss_pred ccCCCCC
Q 011895 332 LFYPNEQ 338 (475)
Q Consensus 332 lf~~d~~ 338 (475)
|++.|..
T Consensus 442 l~~VD~~ 448 (478)
T PRK09593 442 FIYVDRD 448 (478)
T ss_pred eEEECCC
Confidence 9998865
No 39
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=38.84 E-value=53 Score=32.28 Aligned_cols=81 Identities=15% Similarity=0.177 Sum_probs=45.0
Q ss_pred HHHHHhhcCCCeEEEecCcch---HHHhhhChhHHHHHHHHhhhhcCCCCeEEEEEeccccccCCCCChhhHHHHHHHHH
Q 011895 63 AVLAALANSDISVVVAFPNEE---LSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVY 139 (475)
Q Consensus 63 ~vL~A~~~tgi~V~lGv~n~~---l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~nv~ 139 (475)
..+++++..|+||++.|.+.. ...+..++.....+++.. ..+...-.+.+|-+==|-... .....+..|+++|
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~l-v~~~~~~~~DGIdiDwE~~~~---~~~~~~~fv~~Lr 125 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKI-INYVVSYNLDGIDVDLEGPDV---TFGDYLVFIRALY 125 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHH-HHHHHHhCCCceeEEeeccCc---cHhHHHHHHHHHH
Confidence 456677778999999885431 223445555444444433 222211234455544343321 1123778899999
Q ss_pred HHHHhCCC
Q 011895 140 NSLVKYKL 147 (475)
Q Consensus 140 ~aL~~~gl 147 (475)
++|++.|+
T Consensus 126 ~~l~~~~~ 133 (253)
T cd06545 126 AALKKEGK 133 (253)
T ss_pred HHHhhcCc
Confidence 99987664
No 40
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=38.48 E-value=83 Score=32.63 Aligned_cols=81 Identities=12% Similarity=0.205 Sum_probs=33.5
Q ss_pred HHHH-hhcCCCeEEEecCcchHHHhhhChhHHHHHHHHhhhhcC-----CCCeEEEEEeccccccCC---CCChhhHHHH
Q 011895 64 VLAA-LANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYY-----PATKIEAVAVGNEVFADP---KNTTPFLVPA 134 (475)
Q Consensus 64 vL~A-~~~tgi~V~lGv~n~~l~~la~~~~~a~~wv~~~v~~~~-----p~~~I~~I~VGNEvl~~~---~~~~~~L~~a 134 (475)
.|.. +..+|++|+.|+.--.-.....+....-.|=-+|...++ ..-+|.+-=.|||.-..+ ..+..++..-
T Consensus 113 ~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD 192 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKD 192 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHH
T ss_pred HHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHH
Confidence 4444 458999999999520000000111234567777754432 123577778899975432 1222337777
Q ss_pred HHHHHHHHHh
Q 011895 135 MKNVYNSLVK 144 (475)
Q Consensus 135 m~nv~~aL~~ 144 (475)
...+|+.|++
T Consensus 193 ~~~Lr~il~~ 202 (319)
T PF03662_consen 193 FIQLRKILNE 202 (319)
T ss_dssp H---HHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777887765
No 41
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=38.21 E-value=45 Score=31.75 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=30.2
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCCeEE
Q 011895 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVV 76 (475)
Q Consensus 44 ~~llk~~~~~~VRlY~~d~~vL~A~~~tgi~V~ 76 (475)
+|.|+..|+++||+.+..+.-+.++.+.||+|.
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999988878889999999997
No 42
>PLN03030 cationic peroxidase; Provisional
Probab=37.71 E-value=26 Score=36.34 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHhhhcCCCceeEEecCCCCCCCCHHHHHH
Q 011895 6 AFSSFFFFFLVTFAFADTGKVGINYGRVANNLPSPEKVVE 45 (475)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~GvnYg~~~~n~ps~~~v~~ 45 (475)
+|...+|+||+++.+.....-+..|+=|...||..++||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~L~~~fY~~sCP~aE~iV~ 42 (324)
T PLN03030 3 RFIVILFFLLAMMATTLVQGQGTRVGFYSTTCPQAESIVR 42 (324)
T ss_pred eehhHHHHHHHHHhcccchhccCccchhhCcCCCHHHHHH
Confidence 4555666666666555555556888889999999999874
No 43
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=37.45 E-value=39 Score=35.72 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=29.7
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHhhcCCCeEE
Q 011895 43 VVELLKSQRIDRVKTYDTDSAVLAALANSDISVV 76 (475)
Q Consensus 43 v~~llk~~~~~~VRlY~~d~~vL~A~~~tgi~V~ 76 (475)
-+|+|+..|+++|||. .+|.=+.++.+.||+|.
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 3689999999999999 67888889999999987
No 44
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=34.06 E-value=61 Score=35.40 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=43.6
Q ss_pred ceEEEeeecCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCCcccc
Q 011895 258 VKVVVTETGWPSVGDENEAG-----AGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSERNYG 331 (475)
Q Consensus 258 ~~vvVtETGWPS~G~~~~~~-----as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E~~wG 331 (475)
+||+|||-|........+.+ -=++--+.+++.+.+.+. ..|.+.| -+|.-++.|- .|..| +.++.||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~-~dGv~v~-----GY~~WSl~DnfEw~~G-~y~~RfG 441 (477)
T PRK15014 369 KPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVT-YDGVDLM-----GYTPWGCIDCVSFTTG-QYSKRYG 441 (477)
T ss_pred CCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCEE-----EEeeccchhhhcccCC-CccCccc
Confidence 58999999988643211111 112233344444444441 2465543 4777888875 36554 4789999
Q ss_pred ccCCCCC
Q 011895 332 LFYPNEQ 338 (475)
Q Consensus 332 lf~~d~~ 338 (475)
|++.|.+
T Consensus 442 l~~VD~~ 448 (477)
T PRK15014 442 FIYVNKH 448 (477)
T ss_pred eEEECCC
Confidence 9998765
No 45
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=33.97 E-value=47 Score=35.05 Aligned_cols=32 Identities=6% Similarity=0.299 Sum_probs=29.8
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCCeEE
Q 011895 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVV 76 (475)
Q Consensus 44 ~~llk~~~~~~VRlY~~d~~vL~A~~~tgi~V~ 76 (475)
+|.|+..|+++||+.. +|.=+.++.+.||+|.
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~ 359 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVT 359 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEE
Confidence 6899999999999999 8888899999999997
No 46
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=33.02 E-value=1.3e+02 Score=29.33 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=27.0
Q ss_pred HHHcCCCCceEEEeeecCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHh
Q 011895 250 MSAISYNDVKVVVTETGWPSVGDENE---AGAGAANAAAYNGNLVRRVLS 296 (475)
Q Consensus 250 ~~k~g~~~~~vvVtETGWPS~G~~~~---~~as~~na~~y~~~li~~~~~ 296 (475)
...+++++..|+. .|||.|...+ ...+...++..+..+++.+..
T Consensus 42 ~~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 42 AHDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 3456777755555 5999997632 224445555556667777654
No 47
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.83 E-value=4.8e+02 Score=25.26 Aligned_cols=87 Identities=18% Similarity=0.295 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHhCCCCEEEEecCC---hHHHHHhhc--CCCeEEE--ecCcchHHHhhhChhHHHHHHHHhhhhcCCCC
Q 011895 37 LPSPEKVVELLKSQRIDRVKTYDTD---SAVLAALAN--SDISVVV--AFPNEELSKAAADQSFTDNWVQANISKYYPAT 109 (475)
Q Consensus 37 ~ps~~~v~~llk~~~~~~VRlY~~d---~~vL~A~~~--tgi~V~l--Gv~n~~l~~la~~~~~a~~wv~~~v~~~~p~~ 109 (475)
+-+++|+.+.++ .|.+.|++|-++ ++-|+++++ .+++++. ||. .+++.+|++.
T Consensus 116 ~~T~~E~~~A~~-~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~atGGI~----------~~N~~~~l~a--------- 175 (213)
T PRK06552 116 CMTVTEIVTALE-AGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMVTGGVN----------LDNVKDWFAA--------- 175 (213)
T ss_pred cCCHHHHHHHHH-cCCCEEEECCcccCCHHHHHHHhhhCCCCEEEEECCCC----------HHHHHHHHHC---------
Confidence 458999887764 689999999655 567777763 3466553 333 2345566653
Q ss_pred eEEEEEeccccccCC-CCChhhHHHHHHHHHHHHH
Q 011895 110 KIEAVAVGNEVFADP-KNTTPFLVPAMKNVYNSLV 143 (475)
Q Consensus 110 ~I~~I~VGNEvl~~~-~~~~~~L~~am~nv~~aL~ 143 (475)
.+..|.||+..+... ..+...+-...++++++++
T Consensus 176 Ga~~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 176 GADAVGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred CCcEEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 357889998776431 1122236666666666554
No 48
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=31.39 E-value=1.7e+02 Score=32.24 Aligned_cols=186 Identities=16% Similarity=0.211 Sum_probs=99.3
Q ss_pred HHHHHHhhhhcCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCcccc
Q 011895 95 DNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFK 174 (475)
Q Consensus 95 ~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~ 174 (475)
...|..-|.+|--+..|.+-..-||.+.+...+.-.++-..+.+.+-++..+-++-|.|+-+.+. |.. |-|-.+.|
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp--~~~-~~pyN~r~- 198 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASP--WPQ-YAPYNARF- 198 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCc--ccc-cCCcccce-
Confidence 55667777777666678888889997775443333377888888888887776654555544332 332 22222332
Q ss_pred CccchhhhhhHHHHHHhcCCcceeccCCccccccCCCccccccccccCCCCcccCCCCcccccHHHHHHHHHHHHHHHcC
Q 011895 175 SDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAIS 254 (475)
Q Consensus 175 ~~~~~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~~d~~~~~~Y~nlfda~~dav~~A~~k~g 254 (475)
.+||- .-++||+|.. +| -....+..+.+ .+|-- .-+
T Consensus 199 ----------~vDya-------~~hLY~hyd~--sl-~~r~s~~yg~~-------------------~l~i~----~~~- 234 (587)
T COG3934 199 ----------YVDYA-------ANHLYRHYDT--SL-VSRVSTVYGKP-------------------YLDIP----TIM- 234 (587)
T ss_pred ----------eeccc-------cchhhhhccC--Ch-hheeeeeecch-------------------hhccc----hhc-
Confidence 34443 7789996654 22 01111111110 11111 111
Q ss_pred CCCceEEEeeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCCCC--CC--CCCCccc
Q 011895 255 YNDVKVVVTETGWPSVGDENEAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNENQK--PG--PTSERNY 330 (475)
Q Consensus 255 ~~~~~vvVtETGWPS~G~~~~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~yiF~lFDE~~K--~g--~~~E~~w 330 (475)
+-++|+.-|-|-|++-... |.+.|.-.+ +.+....| .+.-.+-|+-|-+--. ++ ..-|-.|
T Consensus 235 -g~~pV~leefGfsta~g~e-------~s~ayfiw~-~lal~~gg------dGaLiwclsdf~~gsdd~ey~w~p~el~f 299 (587)
T COG3934 235 -GWQPVNLEEFGFSTAFGQE-------NSPAYFIWI-RLALDTGG------DGALIWCLSDFHLGSDDSEYTWGPMELEF 299 (587)
T ss_pred -ccceeeccccCCccccccc-------ccchhhhhh-hhHHhhcC------CceEEEEecCCccCCCCCCCcccccccee
Confidence 2489999999999974432 222222111 11221111 1223445554442111 11 1347789
Q ss_pred cccCCCCCeeeee
Q 011895 331 GLFYPNEQTVYDS 343 (475)
Q Consensus 331 Glf~~d~~~ky~l 343 (475)
||.+.|+.+|++.
T Consensus 300 giIradgpek~~a 312 (587)
T COG3934 300 GIIRADGPEKIDA 312 (587)
T ss_pred eeecCCCchhhhH
Confidence 9999999999864
No 49
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=31.09 E-value=60 Score=33.92 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCCEEEEecCC-hHHHHHhhcCCCeEE
Q 011895 42 KVVELLKSQRIDRVKTYDTD-SAVLAALANSDISVV 76 (475)
Q Consensus 42 ~v~~llk~~~~~~VRlY~~d-~~vL~A~~~tgi~V~ 76 (475)
-..|.|+..|+++||+...+ +.-+.++.+.||+|.
T Consensus 299 igaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 299 IGAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 34789999999999999999 888889999999986
No 50
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=30.20 E-value=1.1e+02 Score=31.77 Aligned_cols=75 Identities=24% Similarity=0.148 Sum_probs=50.3
Q ss_pred hHHHHHhhcCCCeEEEecCcchHHHhhhChhHHHHHHHHhhhhcCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHH
Q 011895 62 SAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNS 141 (475)
Q Consensus 62 ~~vL~A~~~tgi~V~lGv~n~~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~nv~~a 141 (475)
..||+++..+|-.+.+|=..-+ .. +++.|.+|+...+..++ ..|.+|+--|.-... .. -++
T Consensus 175 m~VLkp~idsGkik~~Ge~~~d--~W--~ps~Aq~~men~lta~~--~~vdaVvA~nDgtag------Ga-------I~a 235 (341)
T COG4213 175 MKVLKPLIDSGKIKVVGEQWTD--GW--LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAG------GA-------IAA 235 (341)
T ss_pred HHHHHHHhhCCceEEeeecccc--cc--CHHHHHHHHHHHHhccc--CceeEEEcCCCchhH------HH-------HHH
Confidence 5799998888855557753211 11 45688899988888875 458888877642221 12 256
Q ss_pred HHhCCCCCCeEEec
Q 011895 142 LVKYKLDSNVKVSS 155 (475)
Q Consensus 142 L~~~gl~~~IkVsT 155 (475)
|++.||++.|+||=
T Consensus 236 L~a~Gl~g~vpVsG 249 (341)
T COG4213 236 LKAQGLAGKVPVSG 249 (341)
T ss_pred HHhcccCCCCcccC
Confidence 78899998888764
No 51
>PRK08815 GTP cyclohydrolase; Provisional
Probab=29.94 E-value=67 Score=34.06 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=32.2
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEEecC
Q 011895 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFP 80 (475)
Q Consensus 44 ~~llk~~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv~ 80 (475)
.|.|+..|+++||+...++.=+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6889999999999999999888899999999974343
No 52
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=29.91 E-value=67 Score=34.17 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=32.6
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEEecC
Q 011895 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFP 80 (475)
Q Consensus 44 ~~llk~~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv~ 80 (475)
.|.|+..|+++||+...++.=+.++.+.||+|.=-++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6889999999999999999889999999999984443
No 53
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=29.06 E-value=72 Score=34.14 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=31.2
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHhhcCCCeEE
Q 011895 43 VVELLKSQRIDRVKTYDTDSAVLAALANSDISVV 76 (475)
Q Consensus 43 v~~llk~~~~~~VRlY~~d~~vL~A~~~tgi~V~ 76 (475)
..+.|+..|+++||+...++.=+.++.+.||+|.
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~ 371 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVT 371 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEE
Confidence 3688999999999999999988899999999997
No 54
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=29.01 E-value=70 Score=34.74 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=32.0
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEEec
Q 011895 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAF 79 (475)
Q Consensus 44 ~~llk~~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv 79 (475)
.|.|+..|+++||+...++.=+.++.+.||+|.=-+
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~v 408 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRV 408 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEe
Confidence 689999999999999999988999999999997333
No 55
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=28.95 E-value=58 Score=33.44 Aligned_cols=91 Identities=13% Similarity=0.200 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCCCceEEEeeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCC-CCC
Q 011895 244 DAVFAAMSAISYNDVKVVVTETGWPSVGDENEAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNEN-QKP 322 (475)
Q Consensus 244 dav~~A~~k~g~~~~~vvVtETGWPS~G~~~~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~yiF~lFDE~-~K~ 322 (475)
+.+...|+++.--+++|.|||.-=-....... ....+.++.+++.+++.+.+. | +..-..+.+..+.|.. |.+
T Consensus 220 ~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~-~~~~~~qA~~~~~~~~~~~~~---~--~~~v~git~Wg~~D~~sW~~ 293 (320)
T PF00331_consen 220 EQIWNALDRFASLGLPIHITELDVRDDDNPPD-AEEEEAQAEYYRDFLTACFSH---P--PAAVEGITWWGFTDGYSWRP 293 (320)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEEEEESSSTTSC-HHHHHHHHHHHHHHHHHHHHT---T--HCTEEEEEESSSBTTGSTTG
T ss_pred HHHHHHHHHHHHcCCceEEEeeeecCCCCCcc-hHHHHHHHHHHHHHHHHHHhC---C--ccCCCEEEEECCCCCCcccC
Confidence 34445555555456999999964333222110 244677888999999988762 1 0101224444555543 654
Q ss_pred CCCCCccccccCCCCCeee
Q 011895 323 GPTSERNYGLFYPNEQTVY 341 (475)
Q Consensus 323 g~~~E~~wGlf~~d~~~ky 341 (475)
... -.+=+||+.|.+||-
T Consensus 294 ~~~-~~~~~lfd~~~~~Kp 311 (320)
T PF00331_consen 294 DTP-PDRPLLFDEDYQPKP 311 (320)
T ss_dssp GHS-EG--SSB-TTSBB-H
T ss_pred CCC-CCCCeeECCCcCCCH
Confidence 311 223478999998884
No 56
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=28.83 E-value=3.1e+02 Score=28.48 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=47.6
Q ss_pred CceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEEecCcchHHHhhhChhHHHHHHHHhhh
Q 011895 24 GKVGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANIS 103 (475)
Q Consensus 24 ~~~GvnYg~~~~n~ps~~~v~~llk~~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv~n~~l~~la~~~~~a~~wv~~~v~ 103 (475)
.-+|||.-....+ +..++.++.+...+...|=+..-++..++.++..||+|+.-|++ ...|+.+++.-
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s---------~~~A~~a~~~G-- 123 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS---------PGLLKQFLENG-- 123 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC---------HHHHHHHHHcC--
Confidence 3577777433222 33455666666666766666555565678888899999987773 23444444421
Q ss_pred hcCCCCeEEEEEecccc
Q 011895 104 KYYPATKIEAVAVGNEV 120 (475)
Q Consensus 104 ~~~p~~~I~~I~VGNEv 120 (475)
.+ ..|+-|.|.
T Consensus 124 ----aD--~vVaqG~EA 134 (320)
T cd04743 124 ----AR--KFIFEGREC 134 (320)
T ss_pred ----CC--EEEEecCcC
Confidence 12 346778887
No 57
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=28.74 E-value=7.1e+02 Score=26.23 Aligned_cols=140 Identities=11% Similarity=0.171 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHHH---hCCCCEEEEecCC--------------hHHHHHhhcC-CCe-EEEecCcchHHHhhhChhHHHH
Q 011895 36 NLPSPEKVVELLK---SQRIDRVKTYDTD--------------SAVLAALANS-DIS-VVVAFPNEELSKAAADQSFTDN 96 (475)
Q Consensus 36 n~ps~~~v~~llk---~~~~~~VRlY~~d--------------~~vL~A~~~t-gi~-V~lGv~n~~l~~la~~~~~a~~ 96 (475)
...++++|++.++ ..|++.|.+.+.| .++|+++... +++ +-++--+ ...+ +. .-.+
T Consensus 165 r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~--p~~~--~~-ell~ 239 (414)
T TIGR01579 165 RSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSID--PEDI--DE-ELLE 239 (414)
T ss_pred ccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCC--hhhC--CH-HHHH
Confidence 3567888876554 4689999875422 2566666543 442 4443211 0111 11 1122
Q ss_pred HHHHhhhhcCCCCeEEEEEeccccccC-------CCCChhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCC
Q 011895 97 WVQANISKYYPATKIEAVAVGNEVFAD-------PKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPS 169 (475)
Q Consensus 97 wv~~~v~~~~p~~~I~~I~VGNEvl~~-------~~~~~~~L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS 169 (475)
+++++ +. ....|.+|=|-... ...+......+++.+|+.. .| +.+++..-+ .+|
T Consensus 240 ~m~~~-----~~-~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~--~g----i~i~~~~Iv-----G~P-- 300 (414)
T TIGR01579 240 AIASE-----KR-LCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR--PD----YAFGTDIIV-----GFP-- 300 (414)
T ss_pred HHHhc-----Cc-cCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC--CC----CeeeeeEEE-----ECC--
Confidence 22221 00 12345555443322 1223333777777777642 22 445544322 133
Q ss_pred CccccCccchhhhhhHHHHHHhcCCcceeccCCcccc
Q 011895 170 SGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAY 206 (475)
Q Consensus 170 ~g~F~~~~~~~~l~~~ldfL~~t~sp~~vNiyPyf~~ 206 (475)
|. .+..+...++|+.+.+ +-.+++|||--.
T Consensus 301 -gE-----T~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 301 -GE-----SEEDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred -CC-----CHHHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 21 1246788999998765 456777776544
No 58
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=28.07 E-value=74 Score=35.42 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=33.2
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEEecC
Q 011895 43 VVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFP 80 (475)
Q Consensus 43 v~~llk~~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv~ 80 (475)
.++.|+..|+++||+...+|.=+.++.+.||+|.=-+|
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 36899999999999999999999999999999874443
No 59
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=28.00 E-value=1.1e+02 Score=33.47 Aligned_cols=73 Identities=14% Similarity=0.252 Sum_probs=42.7
Q ss_pred ceEEEeeecCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCCcccc
Q 011895 258 VKVVVTETGWPSVGDENEAG-----AGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSERNYG 331 (475)
Q Consensus 258 ~~vvVtETGWPS~G~~~~~~-----as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E~~wG 331 (475)
+||+|||-|........+.+ -=++--+.+++.+.+.+. .|.+.| -+|.-++.|- .|..| ...+.||
T Consensus 366 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~--dGv~V~-----GY~~WSl~Dn~Ew~~G-~y~~RfG 437 (474)
T PRK09852 366 KPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIA--DGIPLM-----GYTTWGCIDLVSASTG-EMSKRYG 437 (474)
T ss_pred CCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHH--CCCCEE-----EEEeecccccccccCC-Cccceee
Confidence 57999999987543211111 112233344444444442 465533 4777888875 25543 4788999
Q ss_pred ccCCCCC
Q 011895 332 LFYPNEQ 338 (475)
Q Consensus 332 lf~~d~~ 338 (475)
|++.|.+
T Consensus 438 Lv~VD~~ 444 (474)
T PRK09852 438 FVYVDRD 444 (474)
T ss_pred eEEECCC
Confidence 9998865
No 60
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=27.97 E-value=4.3e+02 Score=28.20 Aligned_cols=93 Identities=17% Similarity=0.146 Sum_probs=45.8
Q ss_pred HHHHHhhcCCCeEEEecCcch----------------HHHhhhCh-hHHHHHHHHhhhhcC--CCCeEEEEEeccccccC
Q 011895 63 AVLAALANSDISVVVAFPNEE----------------LSKAAADQ-SFTDNWVQANISKYY--PATKIEAVAVGNEVFAD 123 (475)
Q Consensus 63 ~vL~A~~~tgi~V~lGv~n~~----------------l~~la~~~-~~a~~wv~~~v~~~~--p~~~I~~I~VGNEvl~~ 123 (475)
.+|++++..|++.+++..|.- ...|..+. +.=...+.+ |..|+ -+.+|++|.-=||+-..
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~-Vv~~~~~~GI~f~~IsP~NEP~~~ 186 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLAD-VVKHYKKWGINFDYISPFNEPQWN 186 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHH-HHHHHHCTT--EEEEE--S-TTS-
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHH-HHHHHHhcCCccceeCCcCCCCCC
Confidence 578888999999888875421 00011110 011122222 22222 14789999999999876
Q ss_pred CC------CC-hhh-HHHHHHHHHHHHHhCCCCCCeEEecccc
Q 011895 124 PK------NT-TPF-LVPAMKNVYNSLVKYKLDSNVKVSSPIA 158 (475)
Q Consensus 124 ~~------~~-~~~-L~~am~nv~~aL~~~gl~~~IkVsT~~~ 158 (475)
+. .. ... ....|+.++.+|++.||..+ |..+++
T Consensus 187 W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~--I~~~Ea 227 (384)
T PF14587_consen 187 WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTK--ISACEA 227 (384)
T ss_dssp GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-E--EEEEEE
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCce--EEecch
Confidence 41 11 123 78899999999999999754 455544
No 61
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.03 E-value=1.5e+02 Score=28.86 Aligned_cols=79 Identities=19% Similarity=0.409 Sum_probs=49.6
Q ss_pred CCceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHhhcCCCeEEEec--CcchHHHhhhChhHHH
Q 011895 23 TGKVGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTD-----SAVLAALANSDISVVVAF--PNEELSKAAADQSFTD 95 (475)
Q Consensus 23 ~~~~GvnYg~~~~n~ps~~~v~~llk~~~~~~VRlY~~d-----~~vL~A~~~tgi~V~lGv--~n~~l~~la~~~~~a~ 95 (475)
.+.+||.|-...-.++. .--+++|||+- ..+.++....-+.++|.. -|+ .+-.+..
T Consensus 42 ~sTiGIDFk~kti~l~g-----------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne------~Sfeni~ 104 (207)
T KOG0078|consen 42 ISTIGIDFKIKTIELDG-----------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE------KSFENIR 104 (207)
T ss_pred cceEEEEEEEEEEEeCC-----------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch------HHHHHHH
Confidence 45678887655444443 22477889876 467777765555555544 443 2334556
Q ss_pred HHHHHhhhhcCCCCeEEEEEecccc
Q 011895 96 NWVQANISKYYPATKIEAVAVGNEV 120 (475)
Q Consensus 96 ~wv~~~v~~~~p~~~I~~I~VGNEv 120 (475)
.|++ +|..+-++ .+.-|.|||-.
T Consensus 105 ~W~~-~I~e~a~~-~v~~~LvGNK~ 127 (207)
T KOG0078|consen 105 NWIK-NIDEHASD-DVVKILVGNKC 127 (207)
T ss_pred HHHH-HHHhhCCC-CCcEEEeeccc
Confidence 7865 57777654 68889999965
No 62
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=26.18 E-value=1.1e+02 Score=31.08 Aligned_cols=79 Identities=14% Similarity=0.235 Sum_probs=43.5
Q ss_pred HHHhhc--CCCeEEEecCc----chHHHhhhChhHHHHHHHHhhhhcCCCCeEEEEEeccccccCCCCChhh-HHHHHHH
Q 011895 65 LAALAN--SDISVVVAFPN----EELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPF-LVPAMKN 137 (475)
Q Consensus 65 L~A~~~--tgi~V~lGv~n----~~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~-L~~am~n 137 (475)
|.+++. .+++|++.|.. +....+..+......+++ +|..+...-.+.+|-+==|..... ..... ++..|+.
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~~~~DGidiDwE~~~~~-~~d~~~~~~ll~~ 134 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKKYGFDGIDIDWEYPGAR-GDDRENYTALLKE 134 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHHcCCCeEEECCcCCCCC-ccHHHHHHHHHHH
Confidence 455554 48999998854 234455555443333333 232222222456666644433221 12233 8889999
Q ss_pred HHHHHHhC
Q 011895 138 VYNSLVKY 145 (475)
Q Consensus 138 v~~aL~~~ 145 (475)
+|+.|.+.
T Consensus 135 lr~~l~~~ 142 (334)
T smart00636 135 LREALDKE 142 (334)
T ss_pred HHHHHHHh
Confidence 99999864
No 63
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=26.12 E-value=1.4e+02 Score=26.21 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCCEEEEe--c--------CC---hHHHHHhhcCCCeEE
Q 011895 41 EKVVELLKSQRIDRVKTY--D--------TD---SAVLAALANSDISVV 76 (475)
Q Consensus 41 ~~v~~llk~~~~~~VRlY--~--------~d---~~vL~A~~~tgi~V~ 76 (475)
+++.+.++.+|++.|+++ . +. ...|++|+..||+|.
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 445667777899988877 3 22 578999999999975
No 64
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=26.12 E-value=3.5e+02 Score=26.96 Aligned_cols=58 Identities=17% Similarity=0.112 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEEecCcchHHHhhhChhHHHHHHHHhhhhcCCCCeEE
Q 011895 37 LPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIE 112 (475)
Q Consensus 37 ~ps~~~v~~llk~~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv~n~~l~~la~~~~~a~~wv~~~v~~~~p~~~I~ 112 (475)
-.-+.|++.+|.++|++.-|.=+ +..|.. |-|... +..+|.+|++.+=.|.-+.+++.
T Consensus 30 e~eANemlAlL~~~gI~A~K~~~---------~~g~~~--l~Ve~~-------~fa~Av~iL~~~GlPr~~f~~l~ 87 (246)
T COG4669 30 EKEANEMLALLMSHGINAEKKAD---------KDGGTS--LLVEES-------DFAEAVEILNQNGLPRKKFTTLG 87 (246)
T ss_pred HhHHHHHHHHHHHcCCcceeecc---------CCCceE--EEEcHH-------HHHHHHHHHHhcCCCCCCCCcHH
Confidence 34578899999999998888722 233333 445433 33578899998876654444443
No 65
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=26.11 E-value=1.3e+02 Score=26.78 Aligned_cols=39 Identities=28% Similarity=0.327 Sum_probs=35.7
Q ss_pred HHHHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEEecC
Q 011895 42 KVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFP 80 (475)
Q Consensus 42 ~v~~llk~~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv~ 80 (475)
.+.++|+.+|++.|=+...-+..+.+|++.||+|..+-.
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 578899999999999988889999999999999999987
No 66
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=25.88 E-value=8.3e+02 Score=26.88 Aligned_cols=60 Identities=25% Similarity=0.177 Sum_probs=37.7
Q ss_pred HHHHHhhhhcCC-CCeEEEEEeccccccC------CCCC--hhh-HHHHHHH-HHHHHHhCCCCCCeEEec
Q 011895 96 NWVQANISKYYP-ATKIEAVAVGNEVFAD------PKNT--TPF-LVPAMKN-VYNSLVKYKLDSNVKVSS 155 (475)
Q Consensus 96 ~wv~~~v~~~~p-~~~I~~I~VGNEvl~~------~~~~--~~~-L~~am~n-v~~aL~~~gl~~~IkVsT 155 (475)
+.+.+-|+.|-. +..|-+|.+.||+... .+.. .++ +...|++ +.-+|++.|+...+|+-.
T Consensus 208 ~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~ 278 (496)
T PF02055_consen 208 DYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILI 278 (496)
T ss_dssp HHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 345555666532 4789999999999862 1111 133 6677776 899999999955587743
No 67
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=25.54 E-value=7.6e+02 Score=25.51 Aligned_cols=129 Identities=13% Similarity=0.133 Sum_probs=73.2
Q ss_pred CCCCCccccCccchhhhhhHHHHHHhcCCcceeccCCccccccCCCccccccccccCCC-------CcccCCCCcccccH
Q 011895 166 YPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNP-------GQVDSGNGLKYTNL 238 (475)
Q Consensus 166 ~pPS~g~F~~~~~~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~-------~~~d~~~~~~Y~nl 238 (475)
+|...+.+.++.. +.+++++|.+.+.++.+.+-+.-- +.......... ....++. ......|.-.-..+
T Consensus 64 ~~~~~~l~~d~~i-~~~~~l~~~vh~~g~~~~~Ql~H~--G~~~~~~~~~~-~~~~ps~~~~~~~~~~~~~mt~~eI~~i 139 (343)
T cd04734 64 AFGNLNASDDEII-PGFRRLAEAVHAHGAVIMIQLTHL--GRRGDGDGSWL-PPLAPSAVPEPRHRAVPKAMEEEDIEEI 139 (343)
T ss_pred CCCccccCCHHHH-HHHHHHHHHHHhcCCeEEEeccCC--CcCcCcccCCC-cccCCCCCCCCCCCCCCCcCCHHHHHHH
Confidence 4444456655544 579999999999999999987532 11110000000 0000000 00001111112344
Q ss_pred HHHHHHHHHHHHHHcCCCCceEEEeeecC-------CCC-CCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Q 011895 239 FDAQLDAVFAAMSAISYNDVKVVVTETGW-------PSV-GDENEAGAGAANAAAYNGNLVRRVLSGSGT 300 (475)
Q Consensus 239 fda~~dav~~A~~k~g~~~~~vvVtETGW-------PS~-G~~~~~~as~~na~~y~~~li~~~~~~~Gt 300 (475)
.+...+|...|. ++||.+++|.... || |.. -...+-+.+++|-.+|...+++.+++..|.
T Consensus 140 i~~f~~AA~ra~-~aGfDgVeih~ah-GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~ 207 (343)
T cd04734 140 IAAFADAARRCQ-AGGLDGVELQAAH-GHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGP 207 (343)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEcccc-chHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCC
Confidence 555555555443 4799999999876 64 422 222345689999999999999999976664
No 68
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=25.37 E-value=1.4e+02 Score=25.87 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCCEEEEec--CC---hHHHHHhhcCCCeEE
Q 011895 41 EKVVELLKSQRIDRVKTYD--TD---SAVLAALANSDISVV 76 (475)
Q Consensus 41 ~~v~~llk~~~~~~VRlY~--~d---~~vL~A~~~tgi~V~ 76 (475)
+++.+.++.+|++.|+++- .. ..+|++|+..|+++.
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~ 90 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVT 90 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 3445677778999999883 32 578999999999865
No 69
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=24.46 E-value=6.5e+02 Score=24.31 Aligned_cols=107 Identities=15% Similarity=0.131 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC-----------hHHHHHhhcCCCeEEE-ecCc---chHHHhhhChhHHHHHHHHhh
Q 011895 38 PSPEKVVELLKSQRIDRVKTYDTD-----------SAVLAALANSDISVVV-AFPN---EELSKAAADQSFTDNWVQANI 102 (475)
Q Consensus 38 ps~~~v~~llk~~~~~~VRlY~~d-----------~~vL~A~~~tgi~V~l-Gv~n---~~l~~la~~~~~a~~wv~~~v 102 (475)
|++ ...+.||+.+...|=.|-++ +.=++.+...|++|+. -... .....-+.-...|.+.++.+.
T Consensus 21 ~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~pIyq~~~~~~~~~~~~~G~~dA~~A~~~A~ 99 (212)
T cd06418 21 PTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFPIYQGGGYSLDYFGYEQGVKDARDAVAAAR 99 (212)
T ss_pred CCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCccccccCHHHHHHHHHHHHHHHH
Confidence 444 55667788888777667433 2446788889999764 1111 111111222234555555555
Q ss_pred hhcCCCCeEEEEEeccccccCCCCChhh-HHHHHHHHHHHHHhCCCC
Q 011895 103 SKYYPATKIEAVAVGNEVFADPKNTTPF-LVPAMKNVYNSLVKYKLD 148 (475)
Q Consensus 103 ~~~~p~~~I~~I~VGNEvl~~~~~~~~~-L~~am~nv~~aL~~~gl~ 148 (475)
.--.|...+.++.|=..... .+... ++|+++-+.++|...||.
T Consensus 100 ~lG~p~gs~IYfavD~d~~~---~~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 100 ALGFPPGTIIYFAVDFDALD---DEVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HcCCCCCCEEEEEeecCCCc---chhHHHHHHHHHHHHHHHHhcCCc
Confidence 44457666788888443321 22444 999999999999998874
No 70
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=23.95 E-value=5.6e+02 Score=23.44 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHhC--CCCEEEEecCC----h---HHHHHhhcCCCeEEE
Q 011895 37 LPSPEKVVELLKSQ--RIDRVKTYDTD----S---AVLAALANSDISVVV 77 (475)
Q Consensus 37 ~ps~~~v~~llk~~--~~~~VRlY~~d----~---~vL~A~~~tgi~V~l 77 (475)
..++++++++++.. .+..|.+.+-+ + ++++.++..|+++.+
T Consensus 46 ~~~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i 95 (191)
T TIGR02495 46 EIEVEFLLEFLRSRQGLIDGVVITGGEPTLQAGLPDFLRKVRELGFEVKL 95 (191)
T ss_pred cCCHHHHHHHHHHhcCCCCeEEEECCcccCcHhHHHHHHHHHHCCCeEEE
Confidence 46789999888763 36889988744 2 456777778877655
No 71
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.76 E-value=4.5e+02 Score=28.99 Aligned_cols=29 Identities=10% Similarity=0.258 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEecc
Q 011895 128 TPFLVPAMKNVYNSLVKYKLDSNVKVSSP 156 (475)
Q Consensus 128 ~~~L~~am~nv~~aL~~~gl~~~IkVsT~ 156 (475)
....+.+++.+|+++....+...+-|+-|
T Consensus 346 ~e~~~~~v~~lr~~~p~i~i~tdiIvGfP 374 (509)
T PRK14327 346 RESYLELVRKIKEAIPNVALTTDIIVGFP 374 (509)
T ss_pred HHHHHHHHHHHHHhCCCcEEeeeEEEeCC
Confidence 33366777777776544444333556655
No 72
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=23.36 E-value=1.6e+02 Score=27.35 Aligned_cols=84 Identities=13% Similarity=0.201 Sum_probs=44.2
Q ss_pred HHHHHhhcC--CCeEEEecCcchHH---HhhhChhHHHHHHHHhhhhcCCCCeEEEEEeccccccCCCCChhh-HHHHHH
Q 011895 63 AVLAALANS--DISVVVAFPNEELS---KAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPF-LVPAMK 136 (475)
Q Consensus 63 ~vL~A~~~t--gi~V~lGv~n~~l~---~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~-L~~am~ 136 (475)
.-++.++.. |++|++.|...... .++.+....++.++ ++..+...-.+.+|-+==|-....+..... ++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 345556654 99999988542111 23445443333322 233332222455555533433221111234 999999
Q ss_pred HHHHHHHhCCC
Q 011895 137 NVYNSLVKYKL 147 (475)
Q Consensus 137 nv~~aL~~~gl 147 (475)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999987654
No 73
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=23.17 E-value=1.2e+02 Score=29.24 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=33.8
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEEecCc
Q 011895 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPN 81 (475)
Q Consensus 44 ~~llk~~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv~n 81 (475)
++.|+..|+++||+-..+|.=..++.+.||+|.=-++.
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~ 170 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPL 170 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeec
Confidence 57899999999999999998899999999999877764
No 74
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=23.09 E-value=5e+02 Score=26.29 Aligned_cols=84 Identities=11% Similarity=0.135 Sum_probs=44.2
Q ss_pred HHHHHhhc--CCCeEE--Eec--Ccc-hHHHhhhChhHHHHHHHHhhhhcCCCCeEEEEEecc-ccccC-CCCChhh-HH
Q 011895 63 AVLAALAN--SDISVV--VAF--PNE-ELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGN-EVFAD-PKNTTPF-LV 132 (475)
Q Consensus 63 ~vL~A~~~--tgi~V~--lGv--~n~-~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGN-Evl~~-~~~~~~~-L~ 132 (475)
..+.+++. .++||+ |.+ |+. ....+++++..-..++++. ..+...-.+.+|-+=- |-... +...... ++
T Consensus 55 ~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s~-~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~ 133 (318)
T cd02876 55 GWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKLL-VTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELI 133 (318)
T ss_pred HHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHHH-HHHHHHcCCCcEEEechhhhcccCCHHHHHHHH
Confidence 34455553 579988 522 432 4566777766555554443 3222222344554421 11111 0011223 88
Q ss_pred HHHHHHHHHHHhCCC
Q 011895 133 PAMKNVYNSLVKYKL 147 (475)
Q Consensus 133 ~am~nv~~aL~~~gl 147 (475)
..|+.+|++|.+.|+
T Consensus 134 ~~l~el~~~l~~~~~ 148 (318)
T cd02876 134 QLVIHLGETLHSANL 148 (318)
T ss_pred HHHHHHHHHHhhcCC
Confidence 999999999988765
No 75
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=22.96 E-value=2e+02 Score=31.26 Aligned_cols=75 Identities=19% Similarity=0.332 Sum_probs=43.4
Q ss_pred CCC-ceEEEeeecCCCCCCCC-CC---CCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCCc
Q 011895 255 YND-VKVVVTETGWPSVGDEN-EA---GAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSER 328 (475)
Q Consensus 255 ~~~-~~vvVtETGWPS~G~~~-~~---~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E~ 328 (475)
|+. .+|+|||-|........ +. .-=++--+.|++.+.+.+. .|-+.| -+|.-++.|- .|.. +.++
T Consensus 364 Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~--dGv~v~-----GY~~WSl~Dn~Ew~~--Gy~~ 434 (467)
T TIGR01233 364 YPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIA--DGANVK-----GYFIWSLMDVFSWSN--GYEK 434 (467)
T ss_pred cCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHH--cCCCEE-----EEeeccchhhhchhc--cccC
Confidence 444 46999999998643211 10 0122333444444444443 455432 3666677764 3544 4899
Q ss_pred cccccCCCCC
Q 011895 329 NYGLFYPNEQ 338 (475)
Q Consensus 329 ~wGlf~~d~~ 338 (475)
.|||++.|..
T Consensus 435 RfGLv~VD~~ 444 (467)
T TIGR01233 435 RYGLFYVDFD 444 (467)
T ss_pred ccceEEECCC
Confidence 9999999876
No 76
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=22.79 E-value=8.3e+02 Score=25.42 Aligned_cols=137 Identities=17% Similarity=0.286 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHH---hCCCCEEEEecCC-------hHHHHHhhcCCCe-EEEecCcchHHHhhhChhHHHHHHHHhhhh
Q 011895 36 NLPSPEKVVELLK---SQRIDRVKTYDTD-------SAVLAALANSDIS-VVVAFPNEELSKAAADQSFTDNWVQANISK 104 (475)
Q Consensus 36 n~ps~~~v~~llk---~~~~~~VRlY~~d-------~~vL~A~~~tgi~-V~lGv~n~~l~~la~~~~~a~~wv~~~v~~ 104 (475)
++.|++++..+++ ..|+.+|||=+=. ..++..+++.+++ |.++..--.++.. |..|-...+
T Consensus 41 ~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~------a~~Lk~AGl-- 112 (322)
T COG2896 41 ELLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARR------AADLKEAGL-- 112 (322)
T ss_pred ccCCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhcccceEEEecchhhHHHH------HHHHHHcCC--
Confidence 4668999876555 4789999998755 3567777766553 5555432334433 333322221
Q ss_pred cCCCCeEEEEEeccccccCCCCChhh-HHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCccccCccchhhhh
Q 011895 105 YYPATKIEAVAVGNEVFADPKNTTPF-LVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALK 183 (475)
Q Consensus 105 ~~p~~~I~~I~VGNEvl~~~~~~~~~-L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~l~ 183 (475)
-.++|..=+.=.|.+-. .+-.. +-..|+-|.+|+ ++|+. +|||-|+.- . | +++..+.
T Consensus 113 --~rVNVSLDsld~e~f~~--IT~~~~~~~Vl~GI~~A~-~~Gl~-pVKlN~Vv~----k-------g-----vNd~ei~ 170 (322)
T COG2896 113 --DRVNVSLDSLDPEKFRK--ITGRDRLDRVLEGIDAAV-EAGLT-PVKLNTVLM----K-------G-----VNDDEIE 170 (322)
T ss_pred --cEEEeecccCCHHHHHH--HhCCCcHHHHHHHHHHHH-HcCCC-ceEEEEEEe----c-------C-----CCHHHHH
Confidence 11222221111121111 11111 445555565554 57887 499987642 1 1 2224688
Q ss_pred hHHHHHHhcCCcceeccCCccccc
Q 011895 184 PMLEFLRKTSSYLMVNAYPFFAYS 207 (475)
Q Consensus 184 ~~ldfL~~t~sp~~vNiyPyf~~~ 207 (475)
++++|....+- ..+|-++.
T Consensus 171 ~l~e~~~~~~~-----~lrfIE~m 189 (322)
T COG2896 171 DLLEFAKERGA-----QLRFIELM 189 (322)
T ss_pred HHHHHHhhcCC-----ceEEEEEe
Confidence 89999866554 34555554
No 77
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=22.14 E-value=2.1e+02 Score=25.62 Aligned_cols=41 Identities=24% Similarity=0.439 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCCEEEEecC---------------------C--hHHHHHhhcCCCeEEEecC
Q 011895 40 PEKVVELLKSQRIDRVKTYDT---------------------D--SAVLAALANSDISVVVAFP 80 (475)
Q Consensus 40 ~~~v~~llk~~~~~~VRlY~~---------------------d--~~vL~A~~~tgi~V~lGv~ 80 (475)
|+++++.||..+++.|-+|.- | .++++|+...||+|++-+.
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEe
Confidence 677788888877777777642 1 3677899999999998774
No 78
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=21.86 E-value=1.9e+02 Score=26.15 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCCEEEEe--c--------CC---hHHHHHhhcCCCeEE
Q 011895 41 EKVVELLKSQRIDRVKTY--D--------TD---SAVLAALANSDISVV 76 (475)
Q Consensus 41 ~~v~~llk~~~~~~VRlY--~--------~d---~~vL~A~~~tgi~V~ 76 (475)
+++.+.++.+|++.|+++ + .. ...|++|+..||+|.
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 445667778899988887 3 33 468999999999965
No 79
>PRK07198 hypothetical protein; Validated
Probab=21.82 E-value=74 Score=33.94 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=32.1
Q ss_pred HHHHHhCCCCEE-EEecCChHHHHHhhcCCCeEEEecC
Q 011895 44 VELLKSQRIDRV-KTYDTDSAVLAALANSDISVVVAFP 80 (475)
Q Consensus 44 ~~llk~~~~~~V-RlY~~d~~vL~A~~~tgi~V~lGv~ 80 (475)
.|.|+..|+++| |+...++.=+.++.+.||+|.=-|+
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 578999999999 9999998888899999999974443
No 80
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=21.51 E-value=1.7e+02 Score=26.05 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHhhcCCCeEEEecCc
Q 011895 37 LPSPEKVVELLKSQRIDRVKTYDTD-----SAVLAALANSDISVVVAFPN 81 (475)
Q Consensus 37 ~ps~~~v~~llk~~~~~~VRlY~~d-----~~vL~A~~~tgi~V~lGv~n 81 (475)
..+++++++..+..|++.|=+=|-+ ....+.++..||+|++|+--
T Consensus 15 ~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 15 KDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 4489999999999999988887754 35556677899999999953
No 81
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=21.04 E-value=4.4e+02 Score=26.70 Aligned_cols=95 Identities=18% Similarity=0.269 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCccccCccchhhhhhHHHHHHhcCCcceeccCCccccccCCCc
Q 011895 133 PAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADK 212 (475)
Q Consensus 133 ~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~p~~ 212 (475)
.+..+++...++.|.-+ +++..... .+.|+ ++.+.++..+..+.+-|+.++.=+.....
T Consensus 113 ~a~~E~er~v~~~gf~g-~~l~p~~~------~~~~~---------~~~~~pi~~~a~~~gvpv~ihtG~~~~~~----- 171 (293)
T COG2159 113 AAAEELERRVRELGFVG-VKLHPVAQ------GFYPD---------DPRLYPIYEAAEELGVPVVIHTGAGPGGA----- 171 (293)
T ss_pred HHHHHHHHHHHhcCceE-EEeccccc------CCCCC---------ChHHHHHHHHHHHcCCCEEEEeCCCCCCc-----
Confidence 46677888888888765 66643321 11121 14578999999999999999653332211
Q ss_pred cccccccccCCCCcccCCCCcccccHHHHHHHHHHHHHHHcCCCCceEEEeeec--CCCCCC
Q 011895 213 ISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETG--WPSVGD 272 (475)
Q Consensus 213 i~l~yAlf~~~~~~~d~~~~~~Y~nlfda~~dav~~A~~k~g~~~~~vvVtETG--WPS~G~ 272 (475)
.++... .++ .++|-+ +.+ +++++||+++.| +|..-.
T Consensus 172 -~~~~~~-------~~p-----------~~~~~v---a~~--fP~l~IVl~H~G~~~p~~~~ 209 (293)
T COG2159 172 -GLEKGH-------SDP-----------LYLDDV---ARK--FPELKIVLGHMGEDYPWELE 209 (293)
T ss_pred -ccccCC-------CCc-----------hHHHHH---HHH--CCCCcEEEEecCCCCchhHH
Confidence 111100 011 122322 233 799999999999 887643
No 82
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.77 E-value=6e+02 Score=27.20 Aligned_cols=54 Identities=13% Similarity=0.243 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCccccCccchhhhhhHHHHHHhcCCcceeccCCc
Q 011895 130 FLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPF 203 (475)
Q Consensus 130 ~L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~l~~~ldfL~~t~sp~~vNiyPy 203 (475)
.++.+++.+|++.....+...+=|+-|.. + +..+...++|+.+.+ +-.+++|+|
T Consensus 273 ~~~~~v~~lr~~~~~i~i~~d~IvG~PgE------t-------------~ed~~~tl~~i~~l~-~~~i~~f~y 326 (440)
T PRK14334 273 KYLERIAEIREALPDVVLSTDIIVGFPGE------T-------------EEDFQETLSLYDEVG-YDSAYMFIY 326 (440)
T ss_pred HHHHHHHHHHHhCCCcEEEEeEEEECCCC------C-------------HHHHHHHHHHHHhcC-CCEeeeeEe
Confidence 37777777777654332322344565521 0 124566777776654 335566654
No 83
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=20.75 E-value=1.3e+02 Score=32.53 Aligned_cols=18 Identities=11% Similarity=0.050 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 011895 131 LVPAMKNVYNSLVKYKLD 148 (475)
Q Consensus 131 L~~am~nv~~aL~~~gl~ 148 (475)
.+..++.+.+.|.++|+.
T Consensus 265 ~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 265 RLRQARAVADRLLAAGYV 282 (453)
T ss_pred HHHHHHHHHHHHHHCCCE
Confidence 667777888999999985
No 84
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.36 E-value=5.5e+02 Score=28.18 Aligned_cols=56 Identities=11% Similarity=0.274 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCccccCccchhhhhhHHHHHHhcCCcceeccCCc
Q 011895 128 TPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPF 203 (475)
Q Consensus 128 ~~~L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~l~~~ldfL~~t~sp~~vNiyPy 203 (475)
......+++.+|++.....+...+=|+-|..- +..+...++|+.+.+ +-.+++|+|
T Consensus 291 ~~~~~~~v~~lr~~~~~i~i~~~~IvGfPgET-------------------~edf~~Tl~~i~~~~-~~~~~~f~~ 346 (502)
T PRK14326 291 SERFLGILEKVRAAMPDAAITTDIIVGFPGET-------------------EEDFQATLDVVREAR-FSSAFTFQY 346 (502)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEEEECCCCC-------------------HHHHHHHHHHHHHcC-CCEEEEEee
Confidence 34477888888876444434334556765320 134677888886654 223455554
No 85
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=20.36 E-value=4.4e+02 Score=28.26 Aligned_cols=110 Identities=17% Similarity=0.254 Sum_probs=67.6
Q ss_pred HHHHhhcCCCe-EEEecCcchHHHhhhChhHHHHHHHHhhhhcCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHH
Q 011895 64 VLAALANSDIS-VVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSL 142 (475)
Q Consensus 64 vL~A~~~tgi~-V~lGv~n~~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~nv~~aL 142 (475)
.|..+..+|++ +.|.+.-++... -+.|+.+++.-......|.+..++||.+-. ...++.|+.-+
T Consensus 46 pL~~L~~~gfteiiVv~~e~e~~~-------i~~al~~~~~l~~~~~~v~ip~~~~~d~gt--------adsLr~Iy~ki 110 (433)
T KOG1462|consen 46 PLNSLEQAGFTEIIVVVNEDEKLD-------IESALGSNIDLKKRPDYVEIPTDDNSDFGT--------ADSLRYIYSKI 110 (433)
T ss_pred ehhHHHhcCCeEEEEEecHHHHHH-------HHHHHhcCCcccccccEEEeecccccccCC--------HHHHhhhhhhh
Confidence 57778888887 666666433222 346777765432222468888999986533 23455565555
Q ss_pred HhCCCCCCeEEecccccccccccCCCCCccccCccchhhhhhHHHHHHhcCCcceeccCCccccccCC
Q 011895 143 VKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANA 210 (475)
Q Consensus 143 ~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~p 210 (475)
++ ++ +-|-. +.|-.|+. +.+++|+.+.+++-+++=+++.-.....|
T Consensus 111 kS---~D-flvls---------------CD~Vtdv~---l~~lvd~FR~~d~slamli~~~~s~~~~p 156 (433)
T KOG1462|consen 111 KS---ED-FLVLS---------------CDFVTDVP---LQPLVDKFRATDASLAMLIGNALSEVPIP 156 (433)
T ss_pred cc---CC-EEEEe---------------cccccCCC---cHHHHHHHhccChhHhHHhcccccccccc
Confidence 43 11 21111 33433432 78999999999999999999777765544
No 86
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.00 E-value=4.1e+02 Score=26.03 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC--------hHHHHHhhc-CCCeEEEecCcchHHHhhhChhHHHHHHHHhhhhcCCC
Q 011895 38 PSPEKVVELLKSQRIDRVKTYDTD--------SAVLAALAN-SDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPA 108 (475)
Q Consensus 38 ps~~~v~~llk~~~~~~VRlY~~d--------~~vL~A~~~-tgi~V~lGv~n~~l~~la~~~~~a~~wv~~~v~~~~p~ 108 (475)
..|-++++.++..|++.+=+.|.| .++++.+.. .-..|.+|=.-. +.+.++.|++.
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIr-------s~e~~~~~l~~-------- 94 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIR-------DIEKAKRLLSL-------- 94 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcC-------CHHHHHHHHHC--------
Confidence 478899999999999999999887 257777665 444788854321 22334455542
Q ss_pred CeEEEEEeccccccC
Q 011895 109 TKIEAVAVGNEVFAD 123 (475)
Q Consensus 109 ~~I~~I~VGNEvl~~ 123 (475)
-+..|+||.|.+.+
T Consensus 95 -Ga~kvvigt~a~~~ 108 (232)
T PRK13586 95 -DVNALVFSTIVFTN 108 (232)
T ss_pred -CCCEEEECchhhCC
Confidence 23457899998865
Done!