Query 011896
Match_columns 475
No_of_seqs 134 out of 1096
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 17:31:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wwb_A Protein transport prote 100.0 1E-110 4E-115 886.3 32.0 469 4-474 2-472 (476)
2 2ww9_A SEC sixty-one protein h 100.0 6E-110 2E-114 882.5 28.2 465 2-471 1-476 (490)
3 3mp7_A Preprotein translocase 100.0 9E-105 3E-109 841.2 23.7 447 5-469 1-457 (482)
4 1rh5_A Preprotein translocase 100.0 4E-101 1E-105 805.8 39.8 424 8-470 1-426 (436)
5 3dl8_G Preprotein translocase 100.0 3.8E-92 1.3E-96 736.9 28.3 385 20-470 4-422 (429)
6 2zjs_Y Preprotein translocase 100.0 8.5E-92 2.9E-96 733.9 30.0 383 22-469 6-422 (434)
7 3din_C Preprotein translocase 100.0 5E-91 1.7E-95 728.2 26.9 378 20-470 4-417 (431)
8 3j01_A Preprotein translocase 100.0 8.9E-91 3E-95 727.0 28.2 381 26-468 8-419 (435)
9 2nsc_A Trigger factor, TF; cha 57.2 6.2 0.00021 32.7 2.8 22 398-419 37-59 (109)
10 1p9y_A Trigger factor, TF; alp 49.6 9.6 0.00033 32.2 2.8 23 398-420 40-63 (121)
11 2d3o_1 Trigger factor, TF; rib 42.7 7.6 0.00026 32.3 1.1 28 398-425 36-64 (112)
12 3gty_X Trigger factor, TF; cha 22.6 32 0.0011 35.4 1.8 35 386-420 19-60 (433)
13 1t11_A Trigger factor, TF; hel 21.5 46 0.0016 33.7 2.8 34 386-419 22-62 (392)
No 1
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=1e-110 Score=886.26 Aligned_cols=469 Identities=68% Similarity=1.163 Sum_probs=424.3
Q ss_pred cCchHHhhhhhcccCccccccccccchHHHHHHHHHHHHHHHHcccccCCCcccCcCCChhhHHHHHHhhcccccccccc
Q 011896 4 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGI 83 (475)
Q Consensus 4 ~~~~~~~~~~~~~~lp~v~~p~~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~~~~~~~~~~~~a~~~~slfsLGI 83 (475)
++|++|.+||+.+++|||++|++|+|+|+|++||++++++||+|+|||+||+|.++..|++++++++||++|+|+|+|||
T Consensus 2 ~~~~l~~~~p~~~~lP~v~~P~~~~~lr~kil~Tl~~L~iyrigs~IPlpGi~~~~~~~~~~~~~~~fa~~~~SifaLGI 81 (476)
T 2wwb_A 2 AIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGI 81 (476)
T ss_dssp CSCCCCCCHHHHHHSCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTTCSCCCHHHHHHHCSSCSSSCSSSS
T ss_pred CchHHHHHHHHHHhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHccCCCCCcChhhccccHHHHHHHHccccccHHHHhh
Confidence 48999999999999999999999999999999999999999999999999999987778899999999999999999999
Q ss_pred hhHHhHHHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHH
Q 011896 84 TPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGI 163 (475)
Q Consensus 84 ~PyItAsIi~QLl~~~kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~~~~~~~~~~~~~~vl~L~aGs~ 163 (475)
+||||||||||||++.++.+.+++.+ ||||+|++|||+|+++|++||++++.++.++...+.+..+.+.++++|++|++
T Consensus 82 ~PyItASII~QLL~g~~iip~~~~l~-gR~k~~~~tR~lti~la~iQa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~ 160 (476)
T 2wwb_A 82 SPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGL 160 (476)
T ss_dssp THHHHHHHHHHHHHHHCCCSCCSSSS-CSSCHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccchhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHH
Confidence 99999999999998766777776655 99999999999999999999999987555543334556677899999999999
Q ss_pred HHHHHhhhhhccccccchhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHHhhcCCc
Q 011896 164 IVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLP 243 (475)
Q Consensus 164 ~~~wL~e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~~~ 243 (475)
++|||||+||||||+|||+||+|++||+++++|+.|+|.+.+...+.|++|+++.+++.+.+++++.++++++++|.++|
T Consensus 161 ~lmwL~E~It~g~GiGnGiSLiI~agI~~~l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~~~l~~~~~r~~l~ 240 (476)
T 2wwb_A 161 IVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 240 (476)
T ss_dssp HHHHHHHHHHTTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTSSSSSSCSSSSSHH
T ss_pred HHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhcCcccccccccchhHHHHHHHHHHHhcccccccchhhhhhccccc
Confidence 99999999999999999999999999999999999999876665666788888877887766777777888889988877
Q ss_pred cHHHHHHHHHHHHHhhheeccEEEEeeeeccCCCCCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhhcCCcchhhc
Q 011896 244 NITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNL 323 (475)
Q Consensus 244 ~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~ 323 (475)
++..+++++++++++||+|++|||||+||+|.+|+++|+|+|+||+||||+|||+|++++|+++++++++.++++.++++
T Consensus 241 ~~~~ll~~~~v~~~vV~~q~~~rrIPv~yak~~g~~~~~PiKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~ 320 (476)
T 2wwb_A 241 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSL 320 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCBCCCCCBCSSSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH
T ss_pred hHHHHHHHHHHHhheeEEEEEEEEEEEEecccCCccceeeeeeccccchHHHHHHHHHHHHHHHHHHHhhcCCCcchhhh
Confidence 87788888889999999999999999999999999999999999999999999999999999999988655554545556
Q ss_pred cccccccc--cCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHcCCc
Q 011896 324 LGKWKESE--YSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMV 401 (475)
Q Consensus 324 l~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk~g~~ 401 (475)
++.|.+.+ .++.++|++|+++|++||+++.+.+.+|+|.++|.+++++||++|+++|++++|+||||+||||||||++
T Consensus 321 lg~~~~~~~~~~~~~~~~~g~~~~l~~p~~~~~~~~~p~~~~iY~~lii~f~~fyt~~Wv~i~g~np~dvA~~Lkk~G~~ 400 (476)
T 2wwb_A 321 LGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMV 400 (476)
T ss_dssp HCSSSTTCSCTTSSSCCSSSHHHHTSCCSSSSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHCTT
T ss_pred hhhhhhccccccccccccHHHHHHcCCcchhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 66675321 1346789999999999999888778899999999999999999999999999999999999999999999
Q ss_pred cccccCchhHHHHHhhchhhhhHHHHHHHHHHHhHHHHhcccccchhHHHHHHHHHHHHHHHHHhhhccCCCC
Q 011896 402 MPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 474 (475)
Q Consensus 402 IpGiRpg~T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~g~GTslLI~Vgv~~~~ye~~~~e~~~~~~~~~ 474 (475)
|||+||.+|+|||+|+++|+|++||+|++++|++|++++.++||||+||+||+++++||+++||+. |-|..|
T Consensus 401 IpGiRp~~T~~yL~~vi~rit~~Ga~~l~~lavlp~~l~~~~gGTslLI~Vgv~~~~~e~i~~e~~-~~~~~~ 472 (476)
T 2wwb_A 401 MRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQS-EVGSMG 472 (476)
T ss_dssp TCCCCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHHHHHHHHHHT-CCSSCC
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh-hhhhhh
Confidence 999999999999999999999999999999999999998888999999999999999999999998 766443
No 2
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=100.00 E-value=5.7e-110 Score=882.50 Aligned_cols=465 Identities=31% Similarity=0.574 Sum_probs=411.6
Q ss_pred CCcCchHHhhhhhcccCccccccccccchHHHHHHHHHHHHHHHHcccccCCCcccCc---CCChhhHHHHHHhhccccc
Q 011896 2 GGGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTT---GADPFYWMRVILASNRGTV 78 (475)
Q Consensus 2 ~~~~~~~~~~~~~~~~lp~v~~p~~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~---~~~~~~~~~~~~a~~~~sl 78 (475)
|+++|++|.+||+.+++|||++|++++|+|+|++||++++++||+ +|||+||+|.++ ..|.+.+++.++|++|+|+
T Consensus 1 ~~~~~~~~~~~p~~~~lPev~~P~~~~~lr~Kil~Tl~~L~iyri-s~IPlpGi~~~~~~~~~~~~~~~~~~~a~~~~si 79 (490)
T 2ww9_A 1 MSGFRLIDIVKPILPILPEVELPFEKLPFDDKIVYTIFAGLIYLF-AQFPLVGLPKATTPNVNDPIYFLRGVFGCEPRTL 79 (490)
T ss_dssp CCCSCCCCCCCSSGGGSCCCCCCCCCCCSHHHHHHHHHHHHHTTC-CSSCCSCHHHHTTTCSSCCCTTTHHHHTCCSSST
T ss_pred CccchHHHHHHHHHHhCCcccCCCCCccHHHHHHHHHHHHHHHHH-HhcCCCCcCHHHHhcccCHHHHHHHHHcccccHH
Confidence 677999999999999999999999999999999999999999999 999999999974 3456655555569999999
Q ss_pred ccccchhHHhHHHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHH
Q 011896 79 MELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQL 158 (475)
Q Consensus 79 fsLGI~PyItAsIi~QLl~~~kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~~~~~~~~~~~~~~vl~L 158 (475)
|+|||+||||||||||||++.++.++|||+|+||||+|++|||+|+++|++||++++.++.++ .+.++.++++++++|
T Consensus 80 faLGI~PyItASII~QLL~g~~iipl~kege~gR~k~~~~tR~lti~la~iQa~~~~~~~~~~--~~~~~~~~~~ivl~L 157 (490)
T 2ww9_A 80 LEFGLFPNISSGLILQLLAGLKVIKVNFKIQSDRELFQSLTKVFAIVQYVILTNIFIFAGYFG--DDLSVVQIGLINFQL 157 (490)
T ss_dssp TSSTTHHHHHHHHHHHHHHHHTSSCCCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS--CCCSTTHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhhCccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 999999999999999999877888999999999999999999999999999999999854333 344556778999999
Q ss_pred HHHHHHHHHHhhhhhccccccchhHHHHHHHHHHHhHHhhcCcccccCCCCc--cchhhHHHHHHHH-HhhchhhhHHHH
Q 011896 159 CFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGA--EFEGAVIALFHLL-ITKQNKVGALRE 235 (475)
Q Consensus 159 ~aGs~~~~wL~e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~--~~~g~i~~~~~~l-~~~~~~~~~~~~ 235 (475)
++|++++|||||+||||||+|||+||+|++||+++++|++++|.+.....+. |++|+++.+++.+ ...++|.+++.+
T Consensus 158 ~~Gt~~lmwLgE~It~G~GIGnGiSLiI~agI~~~lp~~~~s~~~~~~~~~~~~e~~G~~~~~~~~~~~~~~~~~~~l~~ 237 (490)
T 2ww9_A 158 VGAGIFTTLLAEVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKTFIGGIIS 237 (490)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSCHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCCSCCCHHHHHHHHHHCCCSSCCCSCCC
T ss_pred HHHHHHHHHHHHHHhcccCcccccHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhhcccccccchhh
Confidence 9999999999999999999999999999999999999999998765554433 7889888877755 244444444557
Q ss_pred HHhhcCCccHHHHHHHHHHHHHhhheeccEEEEeeeeccCCCCCcceeeccccccchhHHHHHHHHHHHHHHHH----HH
Q 011896 236 AFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQ----LL 311 (475)
Q Consensus 236 ~~~~~~~~~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~----~~ 311 (475)
.++|.++|+++.+++++++++++||+|++||||||||+|++|+++|+|+|+||+||||+|||||++++|+++++ ++
T Consensus 238 ~~~r~~lp~l~~l~~~l~vi~~vV~~q~~~rrIPIqyak~~g~~s~lPlKln~aGviPiIFassll~~p~~i~~~~~~~~ 317 (490)
T 2ww9_A 238 AFNRDYLPNLTTTIIVLAIAIIVCYLQSVRVELPIRSTRARGTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLV 317 (490)
T ss_dssp CCSSSSCCSHHHHHHHHHHHHHHHHHTTCCEECCCBCSSSSSBCCCCEECHHHHTHHHHHHHHHHHHHCSSSCSTTTHHH
T ss_pred HHhhccccHHHHHHHHHHHHHHHheeeeeEEEEEEEEcccCCcCceeeeEeccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888899998999999999999999999999999999999999999999999999999999999999999888 65
Q ss_pred hhhcCCcchhhccccccccccCCCccccccccccccCcchhhhhccC-hhHHHHHHHHHHHHHHHHHHHhHhhcCCChHH
Q 011896 312 YRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAAN-PFHALFYLVFMLTACALFSKTWIEVSGSSARD 390 (475)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~ 390 (475)
+..++++...++++.|.+. ++.++|++++++|++||+++.+.+.+ |.|.++|.++.+++|++|||+|++++|+||||
T Consensus 318 ~~~~~~~~~~~~lg~~~~~--~~~~~~~~~~~~~l~~p~~~~~~~~~~p~~~~iY~~~~~~lii~Fs~fy~~i~g~np~d 395 (490)
T 2ww9_A 318 AKNEPTHIICKIMGHYENA--NNLLAVPTFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARD 395 (490)
T ss_dssp HHCCCCSSSCTTSBCCSCC--SSSSCSCSSBSCCSSCCCCSSCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred cccCCCccccccccchhcc--ccccchhHHHHHHhCCccchhhhcccCchhhHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 5433333223455566421 34567889999999999988877888 99999999999999999999999999999999
Q ss_pred HHHHHHHcCCccccccCchhHHHHHhhchhhhhHHHHHHHHHHHhHHHHhcccccchhHHHHHHHHHHHHHHHHHhhhcc
Q 011896 391 VAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 470 (475)
Q Consensus 391 iAe~Lkk~g~~IpGiRpg~T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~g~GTslLI~Vgv~~~~ye~~~~e~~~~~ 470 (475)
+||||||||++|||+|||+|+|||+|+++|+|++||+|++++|++|++++.+|||||+||+|||+++++||+++|+.+.+
T Consensus 396 vA~nLkk~G~~IpGiRpG~T~~yL~~vi~rit~~Ga~~L~~lavlp~~l~~~ggGTslLI~VgV~~~~~~qi~~e~~~~g 475 (490)
T 2ww9_A 396 VALEFKDQGITLMGRREQNVAKELNKVIPIAAVTGASVLSLITVIGESLGLKGKAAGIVVGIAGGFSLLEVITIEYQQSG 475 (490)
T ss_dssp HHHHHHHHHHTSSSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999998778999999999999999999999987764
Q ss_pred C
Q 011896 471 G 471 (475)
Q Consensus 471 ~ 471 (475)
|
T Consensus 476 ~ 476 (490)
T 2ww9_A 476 G 476 (490)
T ss_dssp S
T ss_pred c
Confidence 4
No 3
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=100.00 E-value=9.4e-105 Score=841.16 Aligned_cols=447 Identities=36% Similarity=0.717 Sum_probs=318.4
Q ss_pred CchHHhhhhhcccCccccccccccchHHHHHHHHHHHHHHHHcccccCCCcccCcCCChhhHHHHHHhhcccccccccch
Q 011896 5 FRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGIT 84 (475)
Q Consensus 5 ~~~~~~~~~~~~~lp~v~~p~~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~~~~~~~~~~~~a~~~~slfsLGI~ 84 (475)
|+++|.+||+.+++|||++|++++|+|+|++||++++++||+|++||+||+|.+. .|.+..++.+++.+|+|+|+|||+
T Consensus 1 ~~~~~~~~p~~~~lP~v~~P~~~~~lr~Kil~Tl~~L~iyrlgs~IPlpGi~~~~-~~~~~~l~~~~Gg~~~SifaLGI~ 79 (482)
T 3mp7_A 1 MGARDIIYALERWFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGIPERI-QDYFQFLRVVLAGRNGSILTLGIG 79 (482)
T ss_dssp -------------------------CTTTHHHHHHHHHHHHHHHHSBCTTCCSSC-CCSCSSTTTTTCSCTTBTTSSTTH
T ss_pred CCHHHHHHHHHhhCCCccCccccccHHHHHHHHHHHHHHHHHHhhCCCCCcCccc-ccHHHHHHHhcCCCcccHHHHhhH
Confidence 5799999999999999999999999999999999999999999999999999863 344444444557789999999999
Q ss_pred hHHhHHHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-cchhHHHHHHHHHHHHHH
Q 011896 85 PIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQ-LGAGNAILIILQLCFAGI 163 (475)
Q Consensus 85 PyItAsIi~QLl~~~kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~~~~~-~~~~~~~~~vl~L~aGs~ 163 (475)
||||||||||||+..|++++|||+|+||||+|++|||+|+++|++||.+++.++.++...+ .+....++++++|++|++
T Consensus 80 PyITASII~QLL~~~~l~~l~kege~gR~k~~~~tR~lti~la~iQa~~~v~~~~~~~~~~~~~~~~~~~ivl~L~aGt~ 159 (482)
T 3mp7_A 80 PIVTAGIILQLLVGSEIIKLDLANPEDRRFYQALQRVFSVFMCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGI 159 (482)
T ss_dssp HHHHHHHHTTC-----------------------CHHHHHHHHHHHHHHHHHSSSSSCC------CTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997543332111 234567899999999999
Q ss_pred HHHHHhhhhhccccccchhHHHHHHHHHHHhHHhhcCcccccCC-----CCccchhhHHHHHHHHHhhchhhhHHHHHHh
Q 011896 164 IVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSG-----RGAEFEGAVIALFHLLITKQNKVGALREAFY 238 (475)
Q Consensus 164 ~~~wL~e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~-----~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~ 238 (475)
++|||||+||| ||+|||+||+|++||+++++|+++++.+.... .+.|+.|+++.+++.+.. +++.++++
T Consensus 160 ~lmwL~E~It~-~GiGnGiSLiI~agI~~~lp~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~-----~~l~~~~~ 233 (482)
T 3mp7_A 160 VLIILDELVSK-WGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILK-----GDLWGAIY 233 (482)
T ss_dssp HHHHHHHHHHH-HSSSCHHHHHHHHHHHHHHHHHHSCCCCCCC---CCSSSCCCSCHHHHHHHHHHH-----CCSCSSCC
T ss_pred HHHHHHHHHhh-cCcccccHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchHHHHHHHHhc-----chhhHHHh
Confidence 99999999999 99999999999999999999999987543221 234678888777665432 23445566
Q ss_pred hcCCc--cHHHHHHHHHHHHHhhheeccEEEEeeeeccCCCCCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhhcC
Q 011896 239 RQNLP--NITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYS 316 (475)
Q Consensus 239 ~~~~~--~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~ 316 (475)
| ++| +++.+++++++++++||+|++|||||+||+|++ +++|+|+|+|||||||+|||+|++++|+++++++++.
T Consensus 234 ~-~lp~~~l~~l~~~l~v~~~vV~~q~~~rrIPvqyak~~-~~~~iPiKln~aGviPiIfassll~~p~~i~~~~~~~-- 309 (482)
T 3mp7_A 234 R-GGSAPDMLSVVATIVVFFIVVYFESMRVEIPLGYRGVT-VRGSYPIRFLYVSNIPIILTFALYANIQLWARVLDRL-- 309 (482)
T ss_dssp C-SSSSCCHHHHHHHHHHHHHHHHHHHCCEEC-------------CEECSSSSTTHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred h-ccchhHHHHHHHHHHHHHHhheeEeeEEEEEEEecccc-ccceeeEeecccCchHHHHHHHHHHHHHHHHHHhhhc--
Confidence 6 677 788888999999999999999999999999977 8899999999999999999999999999999987532
Q ss_pred CcchhhccccccccccCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHH
Q 011896 317 GNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLK 396 (475)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lk 396 (475)
..+++++|... .++|++++++|++||.++.+++.+|.+..+|.++.+++|++|||||++++++||||+|||||
T Consensus 310 ---~~~~l~~~~~~----~~~~~~g~~~~l~p~~s~~~~~~~p~~~~~Y~~~~~~lii~Fs~fy~~is~~np~diA~nlk 382 (482)
T 3mp7_A 310 ---GHPWLGRFDPT----TGSPISGFVLYVIPPRNIFSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSIARQLQ 382 (482)
T ss_dssp ---SCCSSBCCCCT----TSCCCCBSGGGSCCCSSSTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHSSTTGGGCCC---
T ss_pred ---cchhhhhhccc----ccccchhHHHHhCCcccHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 12356666432 14588999999999988888888999999999999999999999999997799999999999
Q ss_pred HcCCccccccCc-h-hHHHHHhhchhhhhHHHHHHHHHHHhHHHHhcccccchhHHHHHHHHHHHHHHHHHhhhc
Q 011896 397 EQQMVMPGHRDS-N-LQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 469 (475)
Q Consensus 397 k~g~~IpGiRpg-~-T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~g~GTslLI~Vgv~~~~ye~~~~e~~~~ 469 (475)
|||++|||+||| + |+|||+|+++|+|++||+|++++|++|++++..|||||+||+||++++++||+++|+.+|
T Consensus 383 k~G~~IpGiRpG~~tt~~yL~~vi~rit~~Ga~~L~~iavlp~~l~~~ggGTslLI~VgV~~~~~~qi~s~~~~~ 457 (482)
T 3mp7_A 383 RAGLQIPGFRRDPRTLEKVLQRYIPYVTFWGSLTVALIAVLADFLGALGTGTGILLTVGILYRFYEEIAREQITE 457 (482)
T ss_dssp -----CCTTTTTTSTTCC------CTHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCccCCcCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCceeeeeeHHHHHHHHHHHHHHHHHH
Confidence 999999999999 6 799999999999999999999999999999988899999999999999999999998655
No 4
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=100.00 E-value=3.5e-101 Score=805.80 Aligned_cols=424 Identities=38% Similarity=0.721 Sum_probs=357.4
Q ss_pred HHhhhhhcccCccccccccccchHHHHHHHHHHHHHHHHcccccCCCcccCcCCChhhHHHHHHhhcccccccccchhHH
Q 011896 8 LHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIV 87 (475)
Q Consensus 8 ~~~~~~~~~~lp~v~~p~~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~~~~~~~~~~~~a~~~~slfsLGI~PyI 87 (475)
+|.+||+.+++|||++|++++|+|+|++||++++++||+|+|||+||+|.+.. |.+..++.++|++|+|+|+|||+|||
T Consensus 1 ~~~~~p~~~~lP~v~~p~~~~~lr~kil~Tl~~L~iyr~gs~IPlpGi~~~~~-~~~~~~~~~~a~~~~sifaLGI~PyI 79 (436)
T 1rh5_A 1 MKKLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-AIFEFWQTITASRIGTLITLGIGPIV 79 (436)
T ss_dssp -CTTHHHHHHSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCC-SCCTTHHHHHTCCTTBTTTTTTHHHH
T ss_pred CchhhHHHHhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHH-HHHHHHHHhhccccchHHHHccHHHH
Confidence 58899999999999999999999999999999999999999999999999654 44444444458999999999999999
Q ss_pred hHHHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHH
Q 011896 88 TSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVIC 167 (475)
Q Consensus 88 tAsIi~QLl~~~kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~~~~~~~~~~~~~~vl~L~aGs~~~~w 167 (475)
||||+||||++.++.++|||+|+||||+|++|||+|+++|++||.+++.+|.+. +.+..+.+.++++|++|++++||
T Consensus 80 tAsII~QLL~g~~~i~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~g~~~---~~~~~~~~~~vl~L~~Gt~~lmw 156 (436)
T 1rh5_A 80 TAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFG---ILTPLLAFLVIIQIAFGSIILIY 156 (436)
T ss_dssp HHHHHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCceeeecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999876788999999999999999999999999999999999854332 23555678999999999999999
Q ss_pred HhhhhhccccccchhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHHhhcCCccHHH
Q 011896 168 LDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITN 247 (475)
Q Consensus 168 L~e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 247 (475)
|||+||| ||+|||+|++|++||+++++|++++|. |+++++++.+..+++ +..++..
T Consensus 157 L~E~It~-~GiGnGiSLiI~~gI~~~lp~~~~~~~-----------G~i~~~~~~~~~~~~------------~~~~l~~ 212 (436)
T 1rh5_A 157 LDEIVSK-YGIGSGIGLFIAAGVSQTIFVGALGPE-----------GYLWKFLNSLIQGVP------------NIEYIAP 212 (436)
T ss_dssp HHHHHHH-HSSSCHHHHHHHHHHHHHHHHHHHSTT-----------CHHHHHHHHTTTTCC------------CGGGTHH
T ss_pred HHHHHHh-cCcccccHHHHHHHHHHHHHHHHhccc-----------chHHHHHHHHhcccc------------hHHHHHH
Confidence 9999999 999999999999999999999998863 677776654332211 1112566
Q ss_pred HHHHHHHHHHhhheeccEEEEeeeeccCCCCCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhhcCCcchhhccccc
Q 011896 248 LLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKW 327 (475)
Q Consensus 248 ~~~~l~~~~~vV~l~~~~~rIPi~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~ 327 (475)
+++++++++++||+|++|||||+||+|.+|+++|+|+|+||+||||+|||||++++|+++++++++. + . +++++|
T Consensus 213 l~~~l~v~~~vV~~~~~~rrIPvqyak~~g~~~~lPlKln~aGviPiIfassll~~p~~i~~~~~~~-~-~---~~~g~~ 287 (436)
T 1rh5_A 213 IIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRM-G-I---PILGHY 287 (436)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCSSSTTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTT-S-C---CTTCCB
T ss_pred HHHHHHHHHHHHhhcceEEEEEEEecccCCccceeeeecccccchHHHHHHHHHHHHHHHHHHhccc-C-c---chhhhc
Confidence 6778888889999999999999999999899999999999999999999999999999999987432 1 1 245555
Q ss_pred cccccCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHcCCccccccC
Q 011896 328 KESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRD 407 (475)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk~g~~IpGiRp 407 (475)
. .++|++|++||++||++..+.+.+|.+..+|.++.+++|++|||+|++++++||||+||||||||++|||+||
T Consensus 288 ~------~~~~~~gl~yyl~pp~~~~~~~~~p~~~~~y~~~~~~lii~Fs~fy~~is~~np~diA~~Lkk~G~~IpGiRp 361 (436)
T 1rh5_A 288 E------GGRAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRK 361 (436)
T ss_dssp C------SSSBSSSTTGGGCCCCSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------
T ss_pred c------cccccccchhhcCChhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHCCCcCCCcCC
Confidence 2 2479999999999988766555678887889999999999999999999679999999999999999999999
Q ss_pred c-h-hHHHHHhhchhhhhHHHHHHHHHHHhHHHHhcccccchhHHHHHHHHHHHHHHHHHhhhcc
Q 011896 408 S-N-LQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 470 (475)
Q Consensus 408 g-~-T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~g~GTslLI~Vgv~~~~ye~~~~e~~~~~ 470 (475)
| + |+|||+|+++|+|++||+|++++|++|++++.+|||||+||+||++++++||+++|..+|.
T Consensus 362 G~~tt~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~~~~gGTslLI~VgV~~~~~~qi~~~~~~~~ 426 (436)
T 1rh5_A 362 SEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRERTSEL 426 (436)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9 8 7999999999999999999999999999998778999999999999999999999876553
No 5
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=100.00 E-value=3.8e-92 Score=736.88 Aligned_cols=385 Identities=19% Similarity=0.306 Sum_probs=322.2
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHcccccCCCcccCcCCC-------hhhHHHHHH---hhcccccccccchhHHhH
Q 011896 20 EVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGAD-------PFYWMRVIL---ASNRGTVMELGITPIVTS 89 (475)
Q Consensus 20 ~v~~p~~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~~~-------~~~~~~~~~---a~~~~slfsLGI~PyItA 89 (475)
+..+.++++|+|+|++||++++++||+|+|||+||+|.++.++ ..+++.+++ |++|+|+|||||+|||||
T Consensus 4 ~~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlpGi~~~~~~~~~~~~~~~~~~~l~~~~GGa~~~~sifaLGI~PyItA 83 (429)
T 3dl8_G 4 YLKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFALGVMPYISA 83 (429)
T ss_dssp ----CCSCCCCHHHHHHHHHHHHHHHHHHHCSSCCCC---------------CCSSSSSSCCSSSCCCSSSSSHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHhhhccccHHHHHHHHhCcccccccHHHHhhHHHHHH
Confidence 4566789999999999999999999999999999999976532 233444555 378999999999999999
Q ss_pred HHHHHHHhcC--ccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------cccccchhHHHHHHHHHH
Q 011896 90 GLVMQLLAGS--KIIEVDN-NVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYG-------SVSQLGAGNAILIILQLC 159 (475)
Q Consensus 90 sIi~QLl~~~--kl~~l~k-~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~-------~~~~~~~~~~~~~vl~L~ 159 (475)
||+||||+.. ++++++| |+|+||||+|++|||+|+++|++||.+++.++.+. ...+.++.+.++++++|+
T Consensus 84 sII~QLL~~~~P~l~~l~k~ege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~ 163 (429)
T 3dl8_G 84 SIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLV 163 (429)
T ss_dssp HHHHHHHHHHSSCSSSCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCCSSSTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcHHHHHHHHHHHH
Confidence 9999999987 8999999 99999999999999999999999999998753221 122345567889999999
Q ss_pred HHHHHHHHHhhhhhccccccchhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHHhh
Q 011896 160 FAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYR 239 (475)
Q Consensus 160 aGs~~~~wL~e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~ 239 (475)
+|++++|||||+||| ||+|||+|++|++||+++++|+++++.+... +++ .+.+
T Consensus 164 aGt~~lmwL~E~It~-~GiGnGiSliI~~gI~~~lp~~~~~~~~~~~--~g~-~~~~----------------------- 216 (429)
T 3dl8_G 164 AGTMFLVWIADRITE-KGIGNGASLIIFAGIVANFPNAVIQFYEKVK--TGD-IGPL----------------------- 216 (429)
T ss_dssp HHHHHHHHHHHHHHH-HTCTTHHHHHHHHHHHHHTTTTSSCCCCSSS--CSS-SCTH-----------------------
T ss_pred HHHHHHHHHHHHHhh-cCcCcchHHHHHHHHHHHHHHHHHhHHHHhc--CCc-chHH-----------------------
Confidence 999999999999999 9999999999999999999999887643211 111 1211
Q ss_pred cCCccHHHHHHHHHHHHHhhheeccEEEEeeeeccC-------CCCCcceeeccccccchhHHHHHHHHHHHHHHHHHHh
Q 011896 240 QNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNA-------RGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLY 312 (475)
Q Consensus 240 ~~~~~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~-------~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~ 312 (475)
+++..+++++++++++||+|++|||||+||+|+ +|+++|+|+|+|||||||+|||+|++++|++++++++
T Consensus 217 ---~~l~~l~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~ 293 (429)
T 3dl8_G 217 ---TLLLIIALIIAIIVGIVYVQEAERRIPIQYPGRQVGRQLYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNFVQ 293 (429)
T ss_dssp ---HHHHHHHHHHHHHHHHTCSCCCCCCCCCBCSSSCBCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHSCS
T ss_pred ---HHHHHHHHHHHHHHHHHHheeeEEEEEEEEchhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHcc
Confidence 125667788888999999999999999999874 5789999999999999999999999999999988752
Q ss_pred hhcCCcchhhccccccccccCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHH
Q 011896 313 RKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVA 392 (475)
Q Consensus 313 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iA 392 (475)
+ +|. +++.++++| .+|+|.++|.+++++| ||+|++++ +||||+|
T Consensus 294 -----~-------~~~-----------~~~~~~l~~--------~~~~y~~~y~~lii~F----s~fy~~i~-~np~diA 337 (429)
T 3dl8_G 294 -----N-------PFI-----------KVIADMFQP--------GAIFYNFLYVTFIVFF----TYFYTAVL-INPVELA 337 (429)
T ss_dssp -----S-------CCC-----------CTTTTTTTT--------THHHHHHHHHHHHHHH----HHHHHTCT-THHHHHH
T ss_pred -----h-------HHH-----------HHHHHHcCC--------CchHHHHHHHHHHHHH----HHHHHHHc-cCHHHHH
Confidence 1 132 134566776 3588888888877766 58999998 9999999
Q ss_pred HHHHHcCCccccccCc-hhHHHHHhhchhhhhHHHHHHHHHHHhHHHHhc-cc-----ccchhHHHHHHHHHHHHHHHHH
Q 011896 393 KQLKEQQMVMPGHRDS-NLQKELNRYIPTAAAFGGVCIGALTVLADFMGA-IG-----SGTGILLAVTIIYQYFETFEKE 465 (475)
Q Consensus 393 e~Lkk~g~~IpGiRpg-~T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~-~g-----~GTslLI~Vgv~~~~ye~~~~e 465 (475)
|||||+|++|||+||| +|+|||+|+++|+|++||+|++++|++|++++. .| ||||+||+||++++++||++++
T Consensus 338 ~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~~~~~~g~~~~~gGTslLI~Vgv~l~~~~qi~s~ 417 (429)
T 3dl8_G 338 ENLHKAGAFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIPILISVWFNIPFYFGGTTALIVVGVALDTFRQIETY 417 (429)
T ss_dssp HTCCCCBSSSBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCSCCCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCccccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999975 34 8999999999999999999999
Q ss_pred hhhcc
Q 011896 466 RASEL 470 (475)
Q Consensus 466 ~~~~~ 470 (475)
..++.
T Consensus 418 l~~~~ 422 (429)
T 3dl8_G 418 LIQKK 422 (429)
T ss_dssp CCCCC
T ss_pred HHHHH
Confidence 86653
No 6
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=100.00 E-value=8.5e-92 Score=733.87 Aligned_cols=383 Identities=20% Similarity=0.312 Sum_probs=321.6
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcccccCCCcccCcCCC-------hhhHHHHHH---hhcccccccccchhHHhHHH
Q 011896 22 QSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGAD-------PFYWMRVIL---ASNRGTVMELGITPIVTSGL 91 (475)
Q Consensus 22 ~~p~~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~~~-------~~~~~~~~~---a~~~~slfsLGI~PyItAsI 91 (475)
++.++++|+|+|++||++++++||+|+|||+||+|.++.++ +++++.+++ |++|+|+|+|||+|||||||
T Consensus 6 ~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItASI 85 (434)
T 2zjs_Y 6 WSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITAAI 85 (434)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHHHHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHHHH
T ss_pred HhHhcchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHHHHhcccccHHHHHHHHcccccccCcHHHHhhHHHHHHHH
Confidence 34678999999999999999999999999999999876533 567777777 57899999999999999999
Q ss_pred HHHHHhcC--cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccc--cccc--cchhHHHHHHHHHHHHH
Q 011896 92 VMQLLAGS--KIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMS---GMYG--SVSQ--LGAGNAILIILQLCFAG 162 (475)
Q Consensus 92 i~QLl~~~--kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~---g~~~--~~~~--~~~~~~~~~vl~L~aGs 162 (475)
|||||+.. ++++++||+|+||||+|++|||+|+++|++||++++.+ +.++ ...+ .++.+.+.++++|++|+
T Consensus 86 I~QLL~~vip~l~~l~keGe~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~aGt 165 (434)
T 2zjs_Y 86 IMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGI 165 (434)
T ss_dssp HHHHHHHHSHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHHHH
Confidence 99999764 56789999999999999999999999999999999874 1112 1123 45557789999999999
Q ss_pred HHHHHHhhhhhccccccchhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHHhhcCC
Q 011896 163 IIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNL 242 (475)
Q Consensus 163 ~~~~wL~e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 242 (475)
+++|||||+||| ||+|||+|++|++||++++++.+.+...... .++ .+...
T Consensus 166 ~~lmwLgE~It~-~GIGnGiSliI~~gIv~~lp~~~~~~~~~~~--~~~-~~~~~------------------------- 216 (434)
T 2zjs_Y 166 ALLLWMAERITE-YGIGNGTSLIIFAGIVVEWLPQILRTIGLIR--TGE-VNLVA------------------------- 216 (434)
T ss_dssp HHHHHHHHHHHH-TSSSCHHHHHHHHHHHHTHHHHHHHHHHTTT--TTS-SCHHH-------------------------
T ss_pred HHHHHHHHHHhh-cCcccccHHHHHHHHHHHHHHHHHHHHHHhc--cCc-ccHHH-------------------------
Confidence 999999999999 9999999999999999999765533211000 000 01000
Q ss_pred ccHHHHHHHHHHHHHhhheeccEEEEeeeeccC---C----CCCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhhc
Q 011896 243 PNITNLLATVLVFLIVVYFQGFKVVLPVRSKNA---R----GQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKY 315 (475)
Q Consensus 243 ~~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~---~----~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~ 315 (475)
.++.+++++++++++||+|++|||||+||+|+ | |+++|+|+|+||+||||+|||||++++|+++++++.
T Consensus 217 -~~~~l~~~~~vi~~vV~~~~~~rrIPvqyakr~~gr~~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~--- 292 (434)
T 2zjs_Y 217 -FLFFLAFIVLAFAGMAAVQQAERRIPVQYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQ--- 292 (434)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHCEEEEEEEECC-------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCT---
T ss_pred -HHHHHHHHHHHHHHHHHheeeEEEEeehhhhhhccCcccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhc---
Confidence 03455677788889999999999999999975 2 789999999999999999999999999999998653
Q ss_pred CCcchhhccccccccccCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHH
Q 011896 316 SGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQL 395 (475)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~L 395 (475)
+ +. |. +++.++++| .+|+|.++|.+++++|| |||++++ +||||+||||
T Consensus 293 ~-~~-------~~-----------~~~~~~l~~--------~~~~y~~~y~~lii~Fs----~fyt~i~-~np~diA~nL 340 (434)
T 2zjs_Y 293 D-NP-------VL-----------QGIANFFNP--------TRPSGLFIEVLLVILFT----YVYTAVQ-FDPKRIAESL 340 (434)
T ss_dssp T-CH-------HH-----------HHHHHHHCS--------SSHHHHHHHHHHHHHHH----HHHHHCS-SCHHHHHHHT
T ss_pred c-ch-------HH-----------HHHHHHcCC--------CChHHHHHHHHHHHHHH----HHHHHHc-cCHHHHHHHH
Confidence 1 11 22 124566776 46999999999999775 8899998 9999999999
Q ss_pred HHcCCccccccCc-hhHHHHHhhchhhhhHHHHHHHHHHHhHHHHhcc-c------ccchhHHHHHHHHHHHHHHHHHhh
Q 011896 396 KEQQMVMPGHRDS-NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAI-G------SGTGILLAVTIIYQYFETFEKERA 467 (475)
Q Consensus 396 kk~g~~IpGiRpg-~T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~-g------~GTslLI~Vgv~~~~ye~~~~e~~ 467 (475)
||+|++|||+||| +|+|||+|+++|+|++||+|++++|++|++++.+ + ||||+||+|||+++++||++++..
T Consensus 341 kk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~~~~~~~~~~~gGTslLI~VgV~ldt~~qi~s~~~ 420 (434)
T 2zjs_Y 341 REYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNLTGIHSIAFSGIGLLIVVGVALDTLRQVESQLM 420 (434)
T ss_dssp TTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCccCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999999998655 3 899999999999999999999886
Q ss_pred hc
Q 011896 468 SE 469 (475)
Q Consensus 468 ~~ 469 (475)
+|
T Consensus 421 ~~ 422 (434)
T 2zjs_Y 421 LR 422 (434)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 7
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=5e-91 Score=728.17 Aligned_cols=378 Identities=19% Similarity=0.260 Sum_probs=318.7
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHcccccCCCcccCcCC------------ChhhHHHHHH---hhcccccccccch
Q 011896 20 EVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGA------------DPFYWMRVIL---ASNRGTVMELGIT 84 (475)
Q Consensus 20 ~v~~p~~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~~------------~~~~~~~~~~---a~~~~slfsLGI~ 84 (475)
+..+.++++|+|+|++||++++++||+|+|||+||+|.++.+ +..+++.+++ |++|+|+|||||+
T Consensus 4 ~~~~~~~~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Ggal~~~SifaLGI~ 83 (431)
T 3din_C 4 AFKNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIFRRIAETAGVAGILSFYDVFTGGALSRFSVFTMSVT 83 (431)
T ss_dssp ----CCSCSCCSSHHHHHHHHHHHHHHHHSCSSCCCCC--------------------CTTHHHHCSSSSCCCSSSSSHH
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhhccccccccHHHHHHHHcCcccccccHHHHhhH
Confidence 456788999999999999999999999999999999997642 2244455555 4689999999999
Q ss_pred hHHhHHHHHHHHhcC--cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---c-cccc-hhHHHHHHHH
Q 011896 85 PIVTSGLVMQLLAGS--KIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGS---V-SQLG-AGNAILIILQ 157 (475)
Q Consensus 85 PyItAsIi~QLl~~~--kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~~---~-~~~~-~~~~~~~vl~ 157 (475)
|||||||+||||+.. +++++|||+|+||||+|++|||+|+++|++||.+++.++.++. . .+.+ ..+.++++++
T Consensus 84 PyItAsII~QLL~~~iP~l~~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 163 (431)
T 3din_C 84 PYITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTRRLTLLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTMS 163 (431)
T ss_dssp HHHHHHHHHHHHHHHSCSSSSCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccCCchHHHHHHHHHH
Confidence 999999999999997 8999999999999999999999999999999999987532221 1 2334 5678899999
Q ss_pred HHHHHHHHHHHhhhhhccccccchhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHH
Q 011896 158 LCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAF 237 (475)
Q Consensus 158 L~aGs~~~~wL~e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~ 237 (475)
|++|++++|||||+||| ||+|||+|++|++||+++++|+++++.+ . + .+.+
T Consensus 164 L~aGt~~lmwL~E~It~-~GiGnGiSliI~~gI~~~lp~~~~~~~~--~----~-~~~~--------------------- 214 (431)
T 3din_C 164 MLAGTMFLLWLGERITE-KGIGNGISILIFAGIVARYPSYIRQAYL--G----G-LNLL--------------------- 214 (431)
T ss_dssp HHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHHHSTTSSSCCSS--C----C-SCTH---------------------
T ss_pred HHHHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHHHHHhc--c----c-ccHH---------------------
Confidence 99999999999999999 9999999999999999999888877531 1 1 1222
Q ss_pred hhcCCccHHHHHHHHHHHHHhhheeccEEEEeeeeccC-------CCCCcceeeccccccchhHHHHHHHHHHHHHHHHH
Q 011896 238 YRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNA-------RGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQL 310 (475)
Q Consensus 238 ~~~~~~~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~-------~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~ 310 (475)
+++..+++++++++++||+|++|||||+||+|+ +|+++|+|+|+||+||||+|||+|++++|++++++
T Consensus 215 -----~~l~~l~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~ 289 (431)
T 3din_C 215 -----EWIFLIAVALITIFGIILVQQAERRITIQYARRVTGRRVYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIASI 289 (431)
T ss_dssp -----HHHHHHHHHHHHHHHHTTTCCBCCCCCCCBTTTBCCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHTTS
T ss_pred -----HHHHHHHHHHHHHHHHHhheeeEEEEEEEechhhccccccCCCcceeeeeecccCchHHHHHHHHHHHHHHHHHH
Confidence 125667788888899999999999999999874 57899999999999999999999999999999876
Q ss_pred HhhhcCCcchhhccccccccccCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHH
Q 011896 311 LYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARD 390 (475)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~ 390 (475)
+. + +|. .++++| .+|+|.++|.+++++| ||+|++++ +||||
T Consensus 290 ~~-----~-------~~~--------------~~~~~~--------~~~~y~~~y~~lii~F----s~fy~~i~-~np~d 330 (431)
T 3din_C 290 TN-----N-------ETL--------------KNLFRA--------GGFLYLLIYGLLVFFF----TYFYSVVI-FDPRE 330 (431)
T ss_dssp ST-----T-------CCC--------------CCCSST--------THHHHHHHHHHHHHHH----HHHHHTCT-THHHH
T ss_pred cc-----h-------HHH--------------HHHcCC--------CcHHHHHHHHHHHHHH----HHHHHHHh-cCHHH
Confidence 51 1 232 134555 4588888888877766 48999999 99999
Q ss_pred HHHHHHHcCCccccccCc-hhHHHHHhhchhhhhHHHHHHHHHHHhHHHHhc-c-----cccchhHHHHHHHHHHHHHHH
Q 011896 391 VAKQLKEQQMVMPGHRDS-NLQKELNRYIPTAAAFGGVCIGALTVLADFMGA-I-----GSGTGILLAVTIIYQYFETFE 463 (475)
Q Consensus 391 iAe~Lkk~g~~IpGiRpg-~T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~-~-----g~GTslLI~Vgv~~~~ye~~~ 463 (475)
+||||||+|++|||+||| +|+|||+|+++|+|++||+|++++|++|++++. . +||||+||+||++++++||++
T Consensus 331 iA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~~~~~~g~~~~~gGTslLI~Vgv~l~~~~qi~ 410 (431)
T 3din_C 331 ISENIRKYGGYIPGLRPGRSTEQYLHRVLNRVTFIGAVFLVVIALLPYLVQGAIKVNVWIGGTSALIAVGVALDIIQQME 410 (431)
T ss_dssp HTTSCCCCBCSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCccccchhhhhhHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999875 3 389999999999999999999
Q ss_pred HHhhhcc
Q 011896 464 KERASEL 470 (475)
Q Consensus 464 ~e~~~~~ 470 (475)
++..++.
T Consensus 411 s~~~~~~ 417 (431)
T 3din_C 411 THMVMRH 417 (431)
T ss_dssp HHCCCCC
T ss_pred HHHHHHH
Confidence 9876553
No 8
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=100.00 E-value=8.9e-91 Score=727.03 Aligned_cols=381 Identities=19% Similarity=0.315 Sum_probs=320.5
Q ss_pred cccchHHHHHHHHHHHHHHHHcccccCCCcccCcCCC-------hhhHHHHHH---hhcccccccccchhHHhHHHHHHH
Q 011896 26 RKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGAD-------PFYWMRVIL---ASNRGTVMELGITPIVTSGLVMQL 95 (475)
Q Consensus 26 ~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~~~-------~~~~~~~~~---a~~~~slfsLGI~PyItAsIi~QL 95 (475)
.++|+|+|++||++++++||+|+|||+||+|.++.++ .++++.+++ |++|+|+|||||+|||||||+|||
T Consensus 8 ~~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGal~~~SifaLGI~PyItAsII~QL 87 (435)
T 3j01_A 8 GLGELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQL 87 (435)
T ss_dssp SSCSSSHHHHHHHTHHHHHHHHHSCSTTCCSSSSCCSSCSCSCSCCSSSHHHHTCCSSSCCCCSSCCSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhccccHHHHHHHHcccccccccHHHHchHHHHHHHHHHHH
Confidence 4689999999999999999999999999999976532 356667777 469999999999999999999999
Q ss_pred HhcC--cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----ccccccchhHHHHHHHHHHHHHHHHHHH
Q 011896 96 LAGS--KIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMY-----GSVSQLGAGNAILIILQLCFAGIIVICL 168 (475)
Q Consensus 96 l~~~--kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~-----~~~~~~~~~~~~~~vl~L~aGs~~~~wL 168 (475)
|+.. ++++++||+|+||||+|++|||+|+++|++||.+++.+... +...+.++.+.++++++|++|++++|||
T Consensus 88 L~~~ip~l~~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwL 167 (435)
T 3j01_A 88 LTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWL 167 (435)
T ss_dssp HHHHCSSSSSCSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSCCCSCCCCSCSCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 89999999999999999999999999999999999874211 1112344556788999999999999999
Q ss_pred hhhhhccccccchhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHHhhcCCccHHHH
Q 011896 169 DELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNL 248 (475)
Q Consensus 169 ~e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (475)
||+||| ||+|||+|++|++||++++++++.+... .....+ .+.. ..++.+
T Consensus 168 ~E~It~-~GiGnGiSLiI~~gI~~~lp~~~~~~~~--~~~~~~-~~~~--------------------------~~l~~~ 217 (435)
T 3j01_A 168 GEQITE-RGIGNGISIIIFAGIVAGLPPAIAHTIE--QARQGD-LHFL--------------------------VLLLVA 217 (435)
T ss_dssp HHHSTT-SCCSSSHHHHHHHHHHHHSSTTSSSCCC--SSSSTT-SSSH--------------------------HHHHHH
T ss_pred HHHHHh-cCcccccHHHHHHHHHHHHHHHHHHHHH--HHhccc-chHH--------------------------HHHHHH
Confidence 999999 9999999999999999999777654321 100000 0100 014556
Q ss_pred HHHHHHHHHhhheeccEEEEeeeeccC-------CCCCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhhcCCcchh
Q 011896 249 LATVLVFLIVVYFQGFKVVLPVRSKNA-------RGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFV 321 (475)
Q Consensus 249 ~~~l~~~~~vV~l~~~~~rIPi~~~~~-------~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~ 321 (475)
++++++++++||+|++||||||||+|+ +|+++|+|+|+|||||||+|||+|++++|+++++++.+. ++
T Consensus 218 ~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~~~~~g~~s~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~-~~---- 292 (435)
T 3j01_A 218 VLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGG-TG---- 292 (435)
T ss_dssp HHHHHHHHHTTCCCCCSCCCCCCCCCCCSSCCCCCCCCCCCSCCCCCSSCSCSSHHHHHHHHHHHHHHHSSSC-CC----
T ss_pred HHHHHHHHHHHHhheeEEEEEEEehhhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHccCC-cc----
Confidence 677788889999999999999999874 468999999999999999999999999999999875321 00
Q ss_pred hccccccccccCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHcCCc
Q 011896 322 NLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMV 401 (475)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk~g~~ 401 (475)
++|. +++.++++| .+|+|.++|.+++++|| |||++++ +||||+||||||+|++
T Consensus 293 ---~~~~-----------~~~~~~l~~--------~~~~~~~~y~~lii~F~----~fyt~i~-~np~diA~~lkk~G~~ 345 (435)
T 3j01_A 293 ---WNWL-----------TTISLYLQP--------GQPLYVLLYASAIIFFC----FFYTALV-FNPRETADNLKKSGAF 345 (435)
T ss_dssp ---SSCC-----------SSSSCCCCS--------SGGGGTHHHHHHHHHHH----HHHHHHS-SCTTHHHHHTTSTTCS
T ss_pred ---hhHH-----------HHHHHHcCC--------CCcHHHHHHHHHHHHHH----HHHHHHc-cCHHHHHHHHHHcCCc
Confidence 1232 234567776 46899999999999876 6777776 9999999999999999
Q ss_pred cccccCc-hhHHHHHhhchhhhhHHHHHHHHHHHhHHHHhcc------cccchhHHHHHHHHHHHHHHHHHhhh
Q 011896 402 MPGHRDS-NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAI------GSGTGILLAVTIIYQYFETFEKERAS 468 (475)
Q Consensus 402 IpGiRpg-~T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~------g~GTslLI~Vgv~~~~ye~~~~e~~~ 468 (475)
|||+||| +|+|||+|+++|+|++||+|++++|++|++++.. +||||+||+|||+++++||++..-.+
T Consensus 346 IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlP~~l~~~~~~~~~~gGTslLI~VgV~ldt~~qi~s~l~~ 419 (435)
T 3j01_A 346 VPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMS 419 (435)
T ss_dssp SSCCSSSSSSCSHHHHHHHHHCHHHHHHHHHHHHHHHHTTSCCSSSSSSCCHHHHHTHHHHHHHHHHHHHHTSC
T ss_pred CCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCeecccHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999999999999864 58999999999999999999987533
No 9
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=57.24 E-value=6.2 Score=32.73 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=17.4
Q ss_pred cCCccccccCc-hhHHHHHhhch
Q 011896 398 QQMVMPGHRDS-NLQKELNRYIP 419 (475)
Q Consensus 398 ~g~~IpGiRpg-~T~~yL~k~i~ 419 (475)
....|||+||| .-.+.+++...
T Consensus 37 k~~~ipGFRkGKvP~~vi~k~yG 59 (109)
T 2nsc_A 37 QRVEIPGFRKGRIPKNVLKMKLG 59 (109)
T ss_dssp TTCCCTTSCTTCCCHHHHHHHHG
T ss_pred ccCCCCCcCCCCCCHHHHHHHHh
Confidence 45799999999 77777777665
No 10
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=49.63 E-value=9.6 Score=32.18 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=17.7
Q ss_pred cCCccccccCc-hhHHHHHhhchh
Q 011896 398 QQMVMPGHRDS-NLQKELNRYIPT 420 (475)
Q Consensus 398 ~g~~IpGiRpg-~T~~yL~k~i~~ 420 (475)
....|||+||| .-.+.+++....
T Consensus 40 k~v~ipGFRkGKvP~~vi~k~yG~ 63 (121)
T 1p9y_A 40 KKVRIDGLRKGKVPMNIVAQRYGA 63 (121)
T ss_dssp TTCCCTTSCTTCSCHHHHHHHHHH
T ss_pred hhCccCCcCCCCCCHHHHHHHHHH
Confidence 45799999999 777777776643
No 11
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=42.75 E-value=7.6 Score=32.31 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=19.1
Q ss_pred cCCccccccCc-hhHHHHHhhchhhhhHH
Q 011896 398 QQMVMPGHRDS-NLQKELNRYIPTAAAFG 425 (475)
Q Consensus 398 ~g~~IpGiRpg-~T~~yL~k~i~~~t~~G 425 (475)
....|||+||| .-.+.+++...+-.+..
T Consensus 36 k~~~ipGFRkGKvP~~vi~k~yG~~~v~~ 64 (112)
T 2d3o_1 36 RDVRVPGFRPGKAPRKVIENRVGKGYVES 64 (112)
T ss_dssp TTSCBTTBCTTCCCSTTHHHHTTTTSSHH
T ss_pred hhCCCCCcCCCCCCHHHHHHHhCHHHHHH
Confidence 35789999999 66666666665433333
No 12
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=22.56 E-value=32 Score=35.40 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=24.1
Q ss_pred CChHHHHHHHH------HcCCccccccCc-hhHHHHHhhchh
Q 011896 386 SSARDVAKQLK------EQQMVMPGHRDS-NLQKELNRYIPT 420 (475)
Q Consensus 386 ~~p~~iAe~Lk------k~g~~IpGiRpg-~T~~yL~k~i~~ 420 (475)
++++|+.+.+. +....|||+||| .-.+.+++...+
T Consensus 19 v~~~~~~~~~~~~~k~~~k~v~ipGFRkGKvP~~vi~k~yG~ 60 (433)
T 3gty_X 19 FGAEEIAQAEDKAVRYLNQRVEIPGFRKGRIPKNVLKMKLGE 60 (433)
T ss_dssp CCTTHHHHHHHHHHHHHHTSCCCCC--CCCCCSHHHHTTSTT
T ss_pred EcHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHhhH
Confidence 55666655553 346899999999 888888888876
No 13
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=21.53 E-value=46 Score=33.68 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=23.4
Q ss_pred CChHHHHHHHH------HcCCccccccCc-hhHHHHHhhch
Q 011896 386 SSARDVAKQLK------EQQMVMPGHRDS-NLQKELNRYIP 419 (475)
Q Consensus 386 ~~p~~iAe~Lk------k~g~~IpGiRpg-~T~~yL~k~i~ 419 (475)
++++++.+.+. +....|||+||| .-.+.+++...
T Consensus 22 v~~~~~~~~~~~~~~~~~k~~~ipGFRkGKvP~~~i~k~yG 62 (392)
T 1t11_A 22 VPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYG 62 (392)
T ss_dssp ECHHHHHHHHHHHHHHHHTTCCCTTSCSSCCCHHHHHHHHH
T ss_pred EcHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHh
Confidence 45555554443 246899999999 77777777664
Done!