BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011897
(475 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
GN=At1g04910 PE=1 SV=1
Length = 519
Score = 219 bits (559), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 142/433 (32%), Positives = 226/433 (52%), Gaps = 56/433 (12%)
Query: 20 WREPVVPASAWMPCADQRNWEPSGGNNGYILVTANGGMNQQRVAICNAVVLARLLNATLV 79
WR P S W P P+ NGY+ V NGG+NQQR AICNAV+ AR++NATLV
Sbjct: 71 WRPSSAPRSDWPP--------PTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLV 122
Query: 80 VPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVKELPNKLQSLDLEAIGSVVTDVDI 139
+P+ +S W D S F IY EHFI L D+++V ++P+ ++ + I + +
Sbjct: 123 LPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIKAF--QIRP 180
Query: 140 PKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQ 199
P+++ +YL + + + ++L F +RLA + + QRLRCR N+HAL+F P I
Sbjct: 181 PRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIM 240
Query: 200 ETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAH 259
+ ++ +LR +GH +++IHLRFE+DM+A
Sbjct: 241 KLSESIVDKLRS-QGH-----------------------------FMSIHLRFEMDMLAF 270
Query: 260 SLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAA 319
+ C EE++ L KYR+ +F K E R+ G CPLTPEE L+L A
Sbjct: 271 AGCFDIFNPEEQKILRKYRKENF--------ADKRLIYNERRAIGKCPLTPEEVGLILRA 322
Query: 320 LGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQL--AAL 377
+ F+ T +++A +++GG + + +L+P L +N S E S L +A+
Sbjct: 323 MRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRL---DNHSSVDPSEELSATSQGLIGSAV 379
Query: 378 DFIGCTAANAFAMT-DSGSQLSSLVSGYRIYYGGGKMPTIRPNKRRLAAIFVKNSTIEWK 436
D++ C ++ F T D S ++ + G+R+YYG TIRP+++ LA IF+ +
Sbjct: 380 DYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRT--TIRPDRKALAPIFIAREKGKRA 437
Query: 437 VFEQRVRKAVRQT 449
FE+ VR+ + +T
Sbjct: 438 GFEEAVRRVMLKT 450
>sp|Q54KU3|PKS25_DICDI Probable polyketide synthase 25 OS=Dictyostelium discoideum
GN=pks25 PE=3 SV=1
Length = 2380
Score = 40.0 bits (92), Expect = 0.045, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 79 VVPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVKELPNKLQSLDLEAIGSVVTDVD 138
V+P F S+V ++ S I+ E+F + ++ + + + N + ++ IGS + ++
Sbjct: 784 VIPTF--STVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIE 841
Query: 139 IPKESKPSFYLKNIIPI---LLRNG 160
I SFYLK +IP RNG
Sbjct: 842 IAPHPTLSFYLKQMIPKQSQYFRNG 866
>sp|Q54KU5|PKS24_DICDI Probable polyketide synthase 24 OS=Dictyostelium discoideum
GN=pks24 PE=3 SV=1
Length = 2471
Score = 40.0 bits (92), Expect = 0.045, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 79 VVPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVKELPNKLQSLDLEAIGSVVTDVD 138
V+P F S+V ++ S I+ E+F + ++ + + + N + ++ IGS + ++
Sbjct: 789 VIPTF--STVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIE 846
Query: 139 IPKESKPSFYLKNIIPI---LLRNG 160
I SFYLK +IP RNG
Sbjct: 847 IAPHPTLSFYLKQMIPKQSQYFRNG 871
>sp|A1CQH8|UTP25_ASPCL U3 small nucleolar RNA-associated protein 25 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=utp25 PE=3 SV=1
Length = 693
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 360 SATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTIRPN 419
A+ L P KNFSS G A AM+D QL+ + GY+ G + +
Sbjct: 181 DASLLPPLKNFSSVKLKKKLDGPAADLIPAMSDDAQQLAPYIFGYQDVLHGARNTSNSAT 240
Query: 420 KRRLAAIFVKNSTIEW--KVFEQRVRKAVRQTKHIQSRSKG----RSVYRYPRCKECMCP 473
R L AI N ++ +V + R A Q + R +G + +Y P + C+
Sbjct: 241 LRDLLAIHATNHVLKTRDRVLKNNARVAKEQDADLDLRDQGFTRPKVLYLLPTRQACVRV 300
Query: 474 TD 475
D
Sbjct: 301 VD 302
>sp|Q6CQX4|NTF2_KLULA Nuclear transport factor 2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=NTF2 PE=3 SV=1
Length = 125
Score = 33.1 bits (74), Expect = 4.5, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 82 KFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVKELPNKLQSLDLEAIGSVVTDVD 138
+F Y+ D +Q ++Y+E+ + + T ++ K++ KL SL + + +T +D
Sbjct: 14 EFYYNQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSLPFQKVAHRITTLD 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,219,620
Number of Sequences: 539616
Number of extensions: 7426524
Number of successful extensions: 15422
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15411
Number of HSP's gapped (non-prelim): 9
length of query: 475
length of database: 191,569,459
effective HSP length: 121
effective length of query: 354
effective length of database: 126,275,923
effective search space: 44701676742
effective search space used: 44701676742
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)