Query 011897
Match_columns 475
No_of_seqs 138 out of 399
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 06:25:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 8.5E-57 1.8E-61 452.5 2.6 308 53-415 6-349 (351)
2 KOG3849 GDP-fucose protein O-f 98.0 2.2E-05 4.9E-10 79.0 8.1 62 42-103 25-90 (386)
3 PF05830 NodZ: Nodulation prot 95.6 0.38 8.2E-06 49.9 14.8 257 46-400 2-290 (321)
4 PF14771 DUF4476: Domain of un 52.6 4.7 0.0001 34.1 0.0 46 307-367 39-84 (95)
5 PF00799 Gemini_AL1: Geminivir 44.6 24 0.00053 31.6 3.3 28 305-333 14-41 (114)
6 PF10892 DUF2688: Protein of u 34.8 28 0.00061 27.9 1.9 16 304-320 42-57 (60)
7 KOG3705 Glycoprotein 6-alpha-L 33.3 2.1E+02 0.0047 31.4 8.6 70 317-394 398-474 (580)
8 smart00874 B5 tRNA synthetase 27.4 57 0.0012 25.7 2.6 24 300-324 12-35 (71)
9 COG4878 Uncharacterized protei 25.5 71 0.0015 33.2 3.4 58 313-371 93-151 (309)
10 PF07862 Nif11: Nitrogen fixat 23.0 67 0.0014 23.9 2.1 28 296-324 16-43 (49)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=100.00 E-value=8.5e-57 Score=452.54 Aligned_cols=308 Identities=39% Similarity=0.603 Sum_probs=210.4
Q ss_pred ecCchhhHHHHHHHHHHHHHHhcCeEeecccccCCcccCCCC-----CCcccchHHHHHhccCCceecccCchhhhhhhh
Q 011897 53 ANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQ-----FSDIYQEEHFINYLTPDIRMVKELPNKLQSLDL 127 (475)
Q Consensus 53 ~nGGlnq~R~~IcdaVavArlLNATLVlP~l~~~s~w~D~S~-----F~dIfD~~hFi~~L~~dVrIvk~LP~~~~~~~~ 127 (475)
+.||+||||+++++||++|++||+|||||.+...+.|++.++ |+++||+++|+++++.+|.+.+.+|..+.....
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 899999999999999999999999999999999999999887 999999999999999999999999877655322
Q ss_pred hhh------------------------cccccccCCCC-CCChhHHHhhhhHhHhhc------ceEEEecccCCCcCCCC
Q 011897 128 EAI------------------------GSVVTDVDIPK-ESKPSFYLKNIIPILLRN------GVVHLLGFGNRLAFDPI 176 (475)
Q Consensus 128 ~~~------------------------~~~~~~~~~~~-~s~~~~Y~~~ilP~l~k~------~Vi~l~~~~~rLa~~~~ 176 (475)
... ........... ++.+.+|+++++|.+.++ +|+.|.++..++..+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 100 00011112223 778889998899999987 99999999999998888
Q ss_pred ChhhhhhcccccccccccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccchhhhhhhcccccCCceEEEeeehhhhh
Q 011897 177 PFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDM 256 (475)
Q Consensus 177 p~~iQrLRCrvnf~ALrF~p~I~~lg~~lV~Rlr~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ylAlHLR~E~DM 256 (475)
+.++|| +|+|.++|+++|++++++++.. +++|||+|||+|+||
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~-----------------------------~~~yiavHlR~~~D~ 208 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLAG-----------------------------GGPYIAVHLRRGKDW 208 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH---------------------------------SSEEEEEE--SHHH
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhcc-----------------------------cCceEEEeecccCch
Confidence 899988 9999999999999999999931 268999999999999
Q ss_pred hhhccccCCCChhHHHHHHHHHHhhhhhhhhhhcCCCCCChHhhhcCCCCcCCHHHHHHHHHHcCCCCCcEEEEEecccc
Q 011897 257 VAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIY 336 (475)
Q Consensus 257 lA~sgC~~gg~~~E~~eL~~~R~~~~p~~~~~~~~~k~i~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiy 336 (475)
+++|.+++ ++..|+.+|.. ..+.+.+...+..|.||++|++++.+++++|+.+.|.||||++++|
T Consensus 209 --~~~C~~~~---~~~~~~~~~~~----------~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~ 273 (351)
T PF10250_consen 209 --FSACEFKG---ERHLLASPRCW----------GKKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIY 273 (351)
T ss_dssp --HHHHCT-T-------TTTHHHH-----------GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS--
T ss_pred --HhhcccCC---chHHHHHhHhh----------ccccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCccc
Confidence 88999954 78888888863 1234567778899999999999999999999999999999999999
Q ss_pred CccccchHHHhhCCCccccccCCCcccccccccccccchhhheeeeccCceeeecCCCCchhhhhhhhhhhccCCCCce
Q 011897 337 GGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPT 415 (475)
Q Consensus 337 Gg~~~m~~L~~~FPnl~tKetL~s~eEL~pf~~~ss~~AALDy~V~~~SDvFv~t~~G~nf~~~V~GhR~y~g~g~~kt 415 (475)
||.++|.+|++.||++++|+++.+.+|+++|.+ .++|+||++||++||+||+|. ||+|+.+|+++|.|.|.+++||
T Consensus 274 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~vD~~i~~~s~~Figt~-~Stfs~~i~~~R~~~g~~~~~~ 349 (351)
T PF10250_consen 274 GGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQLAMVDQEICSRSDVFIGTC-GSTFSSNIARERHYRGKPKRKS 349 (351)
T ss_dssp ---------HHHHHHHHGGGT--EE--S-------S--HHHHHHHHHHSSEEEE-T-T-HHHHHHHHHHHHSSSS---E
T ss_pred ccchhHHHHHHHhhhhEeccccCCHHHhhhccc--cchhHHHHHHHhcCCEEEecC-cchhHHHhhcccCcCCCCCCCC
Confidence 999999999999999999999999999999965 899999999999999999998 6689999999999999766555
No 2
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.2e-05 Score=79.02 Aligned_cols=62 Identities=26% Similarity=0.351 Sum_probs=48.0
Q ss_pred CCCCCcEEEE-EecCchhhHHHHHHHHHHHHHHhcCeEeecccc---cCCcccCCCCCCcccchHH
Q 011897 42 SGGNNGYILV-TANGGMNQQRVAICNAVVLARLLNATLVVPKFM---YSSVWRDVSQFSDIYQEEH 103 (475)
Q Consensus 42 ~~~~nGyl~v-~~nGGlnq~R~~IcdaVavArlLNATLVlP~l~---~~s~w~D~S~F~dIfD~~h 103 (475)
....||||+. .|-|-+.+|-....-..|.|+.||.|||||-.- +-.+-.---.|...|.++-
T Consensus 25 ~~DP~GYl~yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiEy~~pe~~n~~vpf~~yF~vep 90 (386)
T KOG3849|consen 25 SWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWIEYKHPETKNLMVPFEFYFQVEP 90 (386)
T ss_pred CCCCCccEEEccccccccchHHHHHHHHHHHHHhcccccCCcchhccCCcccccccchhheeeccc
Confidence 3578999998 699999999999999999999999999999653 1111111147888888753
No 3
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=95.59 E-value=0.38 Score=49.89 Aligned_cols=257 Identities=17% Similarity=0.281 Sum_probs=121.5
Q ss_pred CcEEEEEecCchhhHHHHHHHHHHHHHHhcCeEeecccccCCcccCC----CCCCcccchHHHHHhcc--CCceecccCc
Q 011897 46 NGYILVTANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDV----SQFSDIYQEEHFINYLT--PDIRMVKELP 119 (475)
Q Consensus 46 nGyl~v~~nGGlnq~R~~IcdaVavArlLNATLVlP~l~~~s~w~D~----S~F~dIfD~~hFi~~L~--~dVrIvk~LP 119 (475)
+.|++.+--+|++.-=-+++-|-.+|+-.|.||||- |+++ ..|...|++ |-+-.+ ..|+|+-+
T Consensus 2 ~r~~~~r~r~g~gd~l~~la~aw~~a~~~~r~l~id-------w~~s~~~~~~f~n~f~~--ffepv~~i~~~~~~~~-- 70 (321)
T PF05830_consen 2 QRFVVSRRRTGLGDCLWSLAAAWRYAKRTGRTLVID-------WRGSCYLDQPFTNAFPV--FFEPVEDIAGVRVICD-- 70 (321)
T ss_dssp --EEEEE--S-HHHHHHHHHHHHHHHHHHT-EEEEE--------BT-TT-SSTTSBSHHH--HB---SEETTEEEE-S--
T ss_pred CceEEEeccCCchhHHHHHHHHHHHHHHhCCeEEEE-------cCCceecCCcccccCCc--ccchhhhhcCceeEec--
Confidence 468888899999999999999999999999999984 7776 567776654 444333 34455411
Q ss_pred hhhhhhhhhhhcccccccCCCCCCCh--------hHHH----hhhhHhHhh------cceEEEecccCCCcCCCCChhhh
Q 011897 120 NKLQSLDLEAIGSVVTDVDIPKESKP--------SFYL----KNIIPILLR------NGVVHLLGFGNRLAFDPIPFQLQ 181 (475)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~s~~--------~~Y~----~~ilP~l~k------~~Vi~l~~~~~rLa~~~~p~~iQ 181 (475)
..+.+.. .-++.+| ..|-.| +-++ +++--+++. +.||+..=...+ -..++.
T Consensus 71 d~i~~~~--~~g~~fp----~~w~~p~~~~~~~pd~qi~re~d~l~~lf~~~~d~~a~~vv~d~c~~~~-----c~~~ae 139 (321)
T PF05830_consen 71 DRINQFS--FPGPFFP----AWWNKPSIDCVYRPDEQIFRERDELRQLFQSQEDHEANTVVCDACLMWR-----CDEEAE 139 (321)
T ss_dssp GGGGT------SSEES----GGGGS-GGGGS---HHHHHHHHHHHHHHHHSSS--S-SEEEE-S--TTS-----S-HHHH
T ss_pred chhhhhc--CCCCcCh----hHHhCCCcceecCChHHHhhhhHHHHHHhhcccccccchhhhHhhcCCc-----chhHHH
Confidence 1111100 0011111 112222 1121 233333332 345554433222 234555
Q ss_pred hhcccccccccccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccchhhhhhhcccccCCceEEEeeehh--hhhhhh
Q 011897 182 RLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFE--IDMVAH 259 (475)
Q Consensus 182 rLRCrvnf~ALrF~p~I~~lg~~lV~Rlr~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ylAlHLR~E--~DMlA~ 259 (475)
| .-|..|+-+++|++..+.+...-=. | ..=|++|.|.= +|-+.+
T Consensus 140 R----~if~slkpR~eIqarID~iy~ehf~-------------g-----------------~~~IGVHVRhGngeD~~~h 185 (321)
T PF05830_consen 140 R----EIFSSLKPRPEIQARIDAIYREHFA-------------G-----------------YSVIGVHVRHGNGEDIMDH 185 (321)
T ss_dssp H----HHHHHS-B-HHHHHHHHHHHHHHTT-------------T-----------------SEEEEEEE-----------
T ss_pred H----HHHHhCCCCHHHHHHHHHHHHHHcC-------------C-----------------CceEEEEEeccCCcchhcc
Confidence 5 2588999999999998887655222 2 45899999931 222222
Q ss_pred ccccCCCChhHHHHHHHHHHhhhhhhhhhhcCCCCCChHhhhcCCCCcCCHHHHHHHHHHcCCCCCcEEEEEeccccCcc
Q 011897 260 SLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGT 339 (475)
Q Consensus 260 sgC~~gg~~~E~~eL~~~R~~~~p~~~~~~~~~k~i~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~ 339 (475)
+|.+ .+++..|.+.. .....++++=...++.|+||+-.-
T Consensus 186 -~~~~---~D~e~~L~~V~---------------------------------~ai~~ak~~~~~k~~~IFLATDSa---- 224 (321)
T PF05830_consen 186 -APYW---ADEERALRQVC---------------------------------TAIDKAKALAPPKPVRIFLATDSA---- 224 (321)
T ss_dssp --------HHHHHHHHHHH---------------------------------HHHHHHHTS--SS-EEEEEEES-H----
T ss_pred -Cccc---cCchHHHHHHH---------------------------------HHHHHHHhccCCCCeeEEEecCcH----
Confidence 2221 11111111000 011223556666789999999642
Q ss_pred ccchHHHhhCCCccccccCCCccccccccccc-----ccchhhheeeeccCceee-ecCCCCchhhh
Q 011897 340 RRLGALNSLYPYLVTKENLLSATELEPFKNFS-----SQLAALDFIGCTAANAFA-MTDSGSQLSSL 400 (475)
Q Consensus 340 ~~m~~L~~~FPnl~tKetL~s~eEL~pf~~~s-----s~~AALDy~V~~~SDvFv-~t~~G~nf~~~ 400 (475)
..++-+++.||.+++-+.=..+..-.++.+.. -..|-+|-+....+|+-| ++-.+ .|+..
T Consensus 225 eVid~fr~~FPdiiti~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~LLSrCD~LIr~~ptS-~Fsr~ 290 (321)
T PF05830_consen 225 EVIDQFRKKFPDIITIPKQFPASQAGPLHSAAVGIEGGESALIDMYLLSRCDYLIRFPPTS-AFSRY 290 (321)
T ss_dssp HHHHHHHHHSTTEE----------------HHHHHHHHHHHHHHHHHHTTSSEEEEESTT--GGGHH
T ss_pred HHHHHHHHHCCCeEEcccccCCCCCCcCcccccccchHHHHHHHHHHHHhCCeEEEcCCCc-hhhhH
Confidence 45899999999998875544332222332211 124889999999999999 55433 36543
No 4
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=52.55 E-value=4.7 Score=34.15 Aligned_cols=46 Identities=28% Similarity=0.500 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHcCCCCCcEEEEEeccccCccccchHHHhhCCCccccccCCCccccccc
Q 011897 307 PLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPF 367 (475)
Q Consensus 307 PLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~m~~L~~~FPnl~tKetL~s~eEL~pf 367 (475)
++|-++++-+|+-+.|++ .+|..|+-++|++++++.--+-.+.-.|
T Consensus 39 ~~T~~Qv~~il~~f~fd~---------------~kl~~lk~l~p~i~D~~n~~~i~~~f~f 84 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFDN---------------DKLKALKLLYPYIVDPQNYYTIIDAFSF 84 (95)
T ss_pred ceeHHHHHHHHHHcCCCH---------------HHHHHHHHHhhhccCHHHHHHHHHHhcC
Confidence 499999999999999987 4699999999999999643333333333
No 5
>PF00799 Gemini_AL1: Geminivirus Rep catalytic domain; InterPro: IPR022690 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome []. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer []. It is found in association with PF08283 from PFAM. ; GO: 0006260 DNA replication; PDB: 1L5I_A 1L2M_A.
Probab=44.62 E-value=24 Score=31.64 Aligned_cols=28 Identities=29% Similarity=0.333 Sum_probs=15.9
Q ss_pred CCcCCHHHHHHHHHHcCCCCCcEEEEEec
Q 011897 305 LCPLTPEEAVLMLAALGFNRKTHVFVAGA 333 (475)
Q Consensus 305 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g 333 (475)
+|||||||+...|++|--+ ....||..+
T Consensus 14 qC~l~ke~~l~~L~~l~~~-~~~~yI~v~ 41 (114)
T PF00799_consen 14 QCSLTKEEALEQLKNLLTP-SNKKYIRVC 41 (114)
T ss_dssp T----HHHHHHHHHH---S-S-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCc-cCceEEEee
Confidence 6999999999999999654 466787554
No 6
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=34.82 E-value=28 Score=27.88 Aligned_cols=16 Identities=50% Similarity=0.765 Sum_probs=13.8
Q ss_pred CCCcCCHHHHHHHHHHc
Q 011897 304 GLCPLTPEEAVLMLAAL 320 (475)
Q Consensus 304 G~CPLtPeEvgl~L~al 320 (475)
|-| +||||-+.+++++
T Consensus 42 ~~C-itpEE~~~I~e~~ 57 (60)
T PF10892_consen 42 GDC-ITPEEDREILEAT 57 (60)
T ss_pred hcc-CCHHHHHHHHHHH
Confidence 568 9999999999875
No 7
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.26 E-value=2.1e+02 Score=31.42 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=43.2
Q ss_pred HHHcCCCCCcEEEEEeccccCccccchHHHhhCCCccccccCCCcccccccccccc-------cchhhheeeeccCceee
Q 011897 317 LAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSS-------QLAALDFIGCTAANAFA 389 (475)
Q Consensus 317 L~alGf~~~T~IYlA~geiyGg~~~m~~L~~~FPnl~tKetL~s~eEL~pf~~~ss-------~~AALDy~V~~~SDvFv 389 (475)
|..=|=+-.-+||||+-+- ..+..-+.-|||. .+....|.+.-....+ .---||..+.+.+|..|
T Consensus 398 le~rg~~~~rRiflAsDDp----~vv~EAk~kYPnY----e~igd~eia~~A~l~nRYTd~sL~GvIlDIh~LS~~d~LV 469 (580)
T KOG3705|consen 398 LEKRGKPLERRIFLASDDP----TVVPEAKNKYPNY----EVIGDTEIAKTAQLNNRYTDASLMGVILDIHILSKVDYLV 469 (580)
T ss_pred HHHhCCchhheEEEecCCc----hhchHhhccCCCc----EEeccHHHHHHhhccccchhhhhhheeeeeeeecccceEE
Confidence 3334555567899999864 3455667889986 3445555554332222 12446888888888888
Q ss_pred ecCCC
Q 011897 390 MTDSG 394 (475)
Q Consensus 390 ~t~~G 394 (475)
.|.++
T Consensus 470 CTFSS 474 (580)
T KOG3705|consen 470 CTFSS 474 (580)
T ss_pred EechH
Confidence 77543
No 8
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=27.39 E-value=57 Score=25.69 Aligned_cols=24 Identities=42% Similarity=0.506 Sum_probs=19.9
Q ss_pred hhcCCCCcCCHHHHHHHHHHcCCCC
Q 011897 300 IRSEGLCPLTPEEAVLMLAALGFNR 324 (475)
Q Consensus 300 ~R~~G~CPLtPeEvgl~L~alGf~~ 324 (475)
.+..|. .++++|+.-+|+.|||+-
T Consensus 12 ~~llG~-~i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 12 NRLLGL-DLSAEEIEEILKRLGFEV 35 (71)
T ss_pred HHHHCC-CCCHHHHHHHHHHCCCeE
Confidence 355665 499999999999999975
No 9
>COG4878 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.47 E-value=71 Score=33.21 Aligned_cols=58 Identities=24% Similarity=0.148 Sum_probs=46.9
Q ss_pred HHHHHHHcCCC-CCcEEEEEeccccCccccchHHHhhCCCccccccCCCccccccccccc
Q 011897 313 AVLMLAALGFN-RKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFS 371 (475)
Q Consensus 313 vgl~L~alGf~-~~T~IYlA~geiyGg~~~m~~L~~~FPnl~tKetL~s~eEL~pf~~~s 371 (475)
+..++..|--. -+|.||++-+.| +-+..-..|.+.||++-|-.++.+.+|+.+|...+
T Consensus 93 L~~y~~~ls~~~y~~~vfVppSni-l~q~gk~alvk~~p~lktissiy~~deykd~~se~ 151 (309)
T COG4878 93 LADYGDILSITGYDTFVFVPPSNI-LLQKGKFALVKQAPSLKTISSIYNTDEYKDFNSES 151 (309)
T ss_pred HHHHHHHHhccccceEEEeCcccc-cchhHHHHHHHhCCCcceeeeEecccccCcccchh
Confidence 44455555444 478999999999 66777899999999999999999999999995544
No 10
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=22.98 E-value=67 Score=23.93 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=23.9
Q ss_pred ChHhhhcCCCCcCCHHHHHHHHHHcCCCC
Q 011897 296 SPAEIRSEGLCPLTPEEAVLMLAALGFNR 324 (475)
Q Consensus 296 ~~~~~R~~G~CPLtPeEvgl~L~alGf~~ 324 (475)
|++.+.....| -+|+|+--+.+..||.=
T Consensus 16 d~~l~~~l~~~-~~~~e~~~lA~~~Gy~f 43 (49)
T PF07862_consen 16 DPELREQLKAC-QNPEEVVALAREAGYDF 43 (49)
T ss_pred CHHHHHHHHhc-CCHHHHHHHHHHcCCCC
Confidence 67777777889 59999999999999974
Done!