Query 011897
Match_columns 475
No_of_seqs 138 out of 399
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 17:32:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 2.2E-14 7.6E-19 147.9 13.9 300 42-411 18-382 (408)
2 3zy2_A Putative GDP-fucose pro 99.2 2E-10 7E-15 117.0 15.1 282 44-413 6-352 (362)
3 2hhc_A NODZ, nodulation fucosy 96.8 0.022 7.7E-07 56.3 14.5 52 45-99 3-54 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 96.6 0.091 3.1E-06 56.3 19.2 255 44-408 143-420 (526)
5 3l32_A Phosphoprotein; antipar 30.6 22 0.00074 26.0 1.6 21 191-211 2-22 (45)
6 1l2m_A REP protein; A+B fold, 27.3 61 0.0021 28.2 4.2 28 305-333 17-44 (118)
7 1h8b_A ACT-EF34, alpha-actinin 20.5 1.1E+02 0.0039 23.7 4.3 27 293-323 24-51 (75)
8 2eqr_A N-COR1, N-COR, nuclear 17.2 63 0.0021 24.2 2.0 18 303-320 10-27 (61)
9 1p3q_Q VPS9P, vacuolar protein 16.4 46 0.0016 25.2 1.0 12 341-352 15-26 (54)
10 2g7j_A Putative cytoplasmic pr 15.8 56 0.0019 28.3 1.5 19 307-325 2-20 (124)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.55 E-value=2.2e-14 Score=147.86 Aligned_cols=300 Identities=21% Similarity=0.183 Sum_probs=163.9
Q ss_pred CCCCCcEEEEEe-cC-chhhHHHHHHHHHHHHHHhcCe----EeecccccCCcccCC------CCCCcccchHHHHHhcc
Q 011897 42 SGGNNGYILVTA-NG-GMNQQRVAICNAVVLARLLNAT----LVVPKFMYSSVWRDV------SQFSDIYQEEHFINYLT 109 (475)
Q Consensus 42 ~~~~nGyl~v~~-nG-Glnq~R~~IcdaVavArlLNAT----LVlP~l~~~s~w~D~------S~F~dIfD~~hFi~~L~ 109 (475)
....++||+-.. .| |+|.||...-.|.++|+.||.| ||||-...---|+-. -.|+++||++.+ +
T Consensus 18 ~~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~ 93 (408)
T 4ap5_A 18 AASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----N 93 (408)
T ss_dssp --CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----H
T ss_pred CccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----H
Confidence 356789999875 45 8999999999999999999999 999976533335443 279999999875 3
Q ss_pred CCceecccCchhhhhhh-hhhhc-------------cc----------c------cccCCCCCCChhHHH----------
Q 011897 110 PDIRMVKELPNKLQSLD-LEAIG-------------SV----------V------TDVDIPKESKPSFYL---------- 149 (475)
Q Consensus 110 ~dVrIvk~LP~~~~~~~-~~~~~-------------~~----------~------~~~~~~~~s~~~~Y~---------- 149 (475)
..|+|+.. +++.... +..+. .. + .........++.|=.
T Consensus 94 ~~vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c 171 (408)
T 4ap5_A 94 KNIPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSC 171 (408)
T ss_dssp TTSCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEE
T ss_pred hhCCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCcee
Confidence 45566522 2221100 00000 00 0 000000001112211
Q ss_pred -------hhhhHhHhhc---ceEEEecccCCCcCCCCChhhhhhcccccccccccchhHHHHHHHHHHHHhcccCCCCCC
Q 011897 150 -------KNIIPILLRN---GVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPL 219 (475)
Q Consensus 150 -------~~ilP~l~k~---~Vi~l~~~~~rLa~~~~p~~iQrLRCrvnf~ALrF~p~I~~lg~~lV~Rlr~~~~~~~~~ 219 (475)
..+-|.+.+. ..+-+..+...|..-.-..+...+| ..|+|.+.|.+.|++.++..-... ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~~~----~~ 242 (408)
T 4ap5_A 172 LSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLNST----DD 242 (408)
T ss_dssp EEECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHCCC----TT
T ss_pred EEEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhCcc----cc
Confidence 1122333322 1122222333333111122222222 379999999999999888654321 00
Q ss_pred CcccCCCccchhhhhhhcccccCCceEEEeeehhhhhhhhccccCCCChhHHHHHHHHHHhhhhhhhhhhcCCCCCChHh
Q 011897 220 DHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAE 299 (475)
Q Consensus 220 ~~~~~g~~~~~~~~~~~~~~~~~~~ylAlHLR~E~DMlA~sgC~~gg~~~E~~eL~~~R~~~~p~~~~~~~~~k~i~~~~ 299 (475)
.+.+.-+-.-....... ....+++|+|+|+|-+.=+.++..|.
T Consensus 243 ~~h~r~~~dw~~~~~~~-~~~~~~~y~~~H~Rr~d~~~~~~~~~------------------------------------ 285 (408)
T 4ap5_A 243 ADRIPFQEDWMKMKVKL-GSALGGPYLGVHLRRKDFIWGHRQDV------------------------------------ 285 (408)
T ss_dssp TTTCCCCSSGGGCCCCT-TCBCCEEEEEEEECCTTTTTTTCSSS------------------------------------
T ss_pred eeecccchhHhhhhccc-ccccCCCccccccccccchhhhhccC------------------------------------
Confidence 00000000000000001 12235789999999863222322222
Q ss_pred hhcCCCCcCC---HHHHHHHHHHcCCCCCcEEEEEeccccCccccchHHHhhCCCccccccCCCcccccccccccccchh
Q 011897 300 IRSEGLCPLT---PEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAA 376 (475)
Q Consensus 300 ~R~~G~CPLt---PeEvgl~L~alGf~~~T~IYlA~geiyGg~~~m~~L~~~FPnl~tKetL~s~eEL~pf~~~ss~~AA 376 (475)
|-. .+.+.-+++..+ -+.||||+-+. +..+..|++.+|.++.-.. ..+++..+ ...++|.
T Consensus 286 -------ps~~~~~~~i~~~~~~~~---~~~VyiATD~~---~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~ 348 (408)
T 4ap5_A 286 -------PSLEGAVRKIRSLMKTHR---LDKVFVATDAV---RKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAI 348 (408)
T ss_dssp -------CCHHHHHHHHHHHHHHHT---CSCEEEEECCC---HHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHH
T ss_pred -------CCHHHHHHHHHHHHHhcC---CCEEEEeCCCc---hhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhH
Confidence 211 122333344443 34599998643 3456789999998764322 22444444 3356799
Q ss_pred hheeeeccCceeeecCCCCchhhhhhhhhhhccCC
Q 011897 377 LDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGG 411 (475)
Q Consensus 377 LDy~V~~~SDvFv~t~~G~nf~~~V~GhR~y~g~g 411 (475)
||-+||.+||+||+|..+ +|+..|.-.|.+.|..
T Consensus 349 idq~Ic~~a~~FiGt~~S-tfS~~I~~eR~~~G~~ 382 (408)
T 4ap5_A 349 IDQWICAHARFFIGTSVS-TFSFRIHEEREILGLD 382 (408)
T ss_dssp HHHHHHHTEEEEEBCTTC-HHHHHHHHHHHHHTBC
T ss_pred HHHHHHHhCCeeEeCCcC-chhHHHHHHHHhcCCC
Confidence 999999999999999855 7999999999999853
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.19 E-value=2e-10 Score=117.02 Aligned_cols=282 Identities=18% Similarity=0.216 Sum_probs=162.0
Q ss_pred CCCcEEEE-EecCchhhHHHHHHHHHHHHHHhcCeEeecccccCCcccCC--CCCCcccchHHHHHhccCCceecccCch
Q 011897 44 GNNGYILV-TANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDV--SQFSDIYQEEHFINYLTPDIRMVKELPN 120 (475)
Q Consensus 44 ~~nGyl~v-~~nGGlnq~R~~IcdaVavArlLNATLVlP~l~~~s~w~D~--S~F~dIfD~~hFi~~L~~dVrIvk~LP~ 120 (475)
.+||||+- .|-|-+.+|-....-+.+.|+.||.|||||-+-.=.. ..+ -.|++.|+++. |+..-|||.. +
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~-~~~~~vpf~~yF~v~~----l~~yhrvi~m--e 78 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH-PETKMIPFEFLFQVGT----VAKYTRVVTM--Q 78 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS-SSCEEECHHHHBCHHH----HTTTSCEECH--H
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC-Ccccccchhheeecch----hhhhceeeeH--H
Confidence 47999998 6999999999999999999999999999998752222 111 25888888875 3333344421 1
Q ss_pred hhhh-hh-----hhhhcccccc-----------cCCC-CCCCh---------------hHHH----------hhhhHhH-
Q 011897 121 KLQS-LD-----LEAIGSVVTD-----------VDIP-KESKP---------------SFYL----------KNIIPIL- 156 (475)
Q Consensus 121 ~~~~-~~-----~~~~~~~~~~-----------~~~~-~~s~~---------------~~Y~----------~~ilP~l- 156 (475)
+++. +- +..-.+.+.. ..++ |.-+| .+|- ......+
T Consensus 79 ~Fm~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~ 158 (362)
T 3zy2_A 79 EFTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWL 158 (362)
T ss_dssp HHHHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHH
T ss_pred HHHHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHH
Confidence 1100 00 0000000000 0011 11111 1110 0011111
Q ss_pred -----hhcceEEEecccCCCcCCCCC--hhhhhhcccccccccccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccc
Q 011897 157 -----LRNGVVHLLGFGNRLAFDPIP--FQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYAD 229 (475)
Q Consensus 157 -----~k~~Vi~l~~~~~rLa~~~~p--~~iQrLRCrvnf~ALrF~p~I~~lg~~lV~Rlr~~~~~~~~~~~~~~g~~~~ 229 (475)
.+|-|+.|++.-.. |...+ -.||| -|++.++|.+.|++.++.--.
T Consensus 159 ~~~p~~~~pVlAf~gaPa~--FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L~------------------ 210 (362)
T 3zy2_A 159 EKFPSEEYPVLAFSSAPAP--FPSKGKVWSIQK--------YLRWSSRITEQAKKFISANLA------------------ 210 (362)
T ss_dssp HHSCTTTCSEEEESSCSSC--SSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHCC------------------
T ss_pred HhCCcccCceEeecCCCCC--CCcChhhHhHHH--------hccccHHHHHHHHHHHHHhcC------------------
Confidence 24677777763222 32222 34454 589999999999998876332
Q ss_pred hhhhhhhcccccCCceEEEeeehhhhhhhhccccCC-CCh-----hHHHHHHHHHHhhhhhhhhhhcCCC-CCChHhhhc
Q 011897 230 SIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFG-GGE-----EERQELEKYREIHFPALAHLKKTTK-LPSPAEIRS 302 (475)
Q Consensus 230 ~~~~~~~~~~~~~~~ylAlHLR~E~DMlA~sgC~~g-g~~-----~E~~eL~~~R~~~~p~~~~~~~~~k-~i~~~~~R~ 302 (475)
+||||+|||-=.|+.-. |.+- .+. +.-.-+ .| . +++ .+.
T Consensus 211 -------------rpyVgIHLR~G~DW~~a--C~hlk~~~~~~lfaSPQC~------Gy---~----~~~~~lt------ 256 (362)
T 3zy2_A 211 -------------KPFVAVHLRNDADWVRV--CEHIDTTTNRPLFASEQCL------GE---G----HHLGTLT------ 256 (362)
T ss_dssp -------------SSEEEEEECCCHHHHHH--HHTCCTTTCCCCTTTHHHH------CG---G----GTTCCCC------
T ss_pred -------------CCeEEEEEecCCcHHHH--HhhhccccCcccccCCccc------CC---c----ccCcccc------
Confidence 38999999999999876 8752 110 000000 00 0 000 000
Q ss_pred CCCCcCCHHH----HHHHHHHcCCCCCcEEEEEeccccCccccchHHHhhCCCccccccCCCcccccccccccccchhhh
Q 011897 303 EGLCPLTPEE----AVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALD 378 (475)
Q Consensus 303 ~G~CPLtPeE----vgl~L~alGf~~~T~IYlA~geiyGg~~~m~~L~~~FPnl~tKetL~s~eEL~pf~~~ss~~AALD 378 (475)
...|==+-++ +..+++.++-+ .||||+-.. ..+.-|+++|+....+ +.+ +. ...|+||
T Consensus 257 ~emClPSle~I~rqIk~~vk~~~lk---sVFIATDa~----~~~~ELk~~L~~~~v~--vv~------~~---pe~a~ID 318 (362)
T 3zy2_A 257 KEICSPSKQQILEQIVEKVGSIGAK---SVFVASDKD----HMIDEINEALKPYEIE--AHR------QE---PDDMYTS 318 (362)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHTCS---EEEEEESSC----CCHHHHHHHHGGGTCC--EEC------CS---SCCHHHH
T ss_pred hhccCCCHHHHHHHHHHHHHhcCCc---EEEEecCCH----HHHHHHHHHhhccCce--EEE------eC---CchhHHH
Confidence 0124223433 44556666544 599999633 3578888888752111 100 10 1179999
Q ss_pred eeeeccCceeeecCCCCchhhhhhhhhhhccCCCC
Q 011897 379 FIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKM 413 (475)
Q Consensus 379 y~V~~~SDvFv~t~~G~nf~~~V~GhR~y~g~g~~ 413 (475)
.+||.+||+||+|..+ +|+..|.-.|--.|.-++
T Consensus 319 ~~I~~~A~~FIGN~~S-SFSa~I~rERdi~G~~~~ 352 (362)
T 3zy2_A 319 LAIMGRADLFVGNCVS-TFSHIVKRERDHAGQSPR 352 (362)
T ss_dssp HHHHHHSSEEEECTTC-HHHHHHHHHHHHSSSSCC
T ss_pred HHHHHhCCEeecCccc-cccHHHHHHHHhcCCCCC
Confidence 9999999999999855 799999999998873333
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=96.75 E-value=0.022 Score=56.31 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=41.4
Q ss_pred CCcEEEEEecCchhhHHHHHHHHHHHHHHhcCeEeecccccCCcccCCCCCCccc
Q 011897 45 NNGYILVTANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQFSDIY 99 (475)
Q Consensus 45 ~nGyl~v~~nGGlnq~R~~IcdaVavArlLNATLVlP~l~~~s~w~D~S~F~dIf 99 (475)
+..||++...|||.+|=-+++.|.++|.+.|.+|+|--.. ..|-. ..|.+.|
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f 54 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF 54 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC
Confidence 4579999999999999999999999999999998886554 33322 3466666
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=96.64 E-value=0.091 Score=56.34 Aligned_cols=255 Identities=16% Similarity=0.099 Sum_probs=136.8
Q ss_pred CCCcEEEEEe--cCchhhHHHHHHHHHHHHHHhcCeEeecccccCCcccCC-CCCCcccchHHHHHhccCCceecccCch
Q 011897 44 GNNGYILVTA--NGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDV-SQFSDIYQEEHFINYLTPDIRMVKELPN 120 (475)
Q Consensus 44 ~~nGyl~v~~--nGGlnq~R~~IcdaVavArlLNATLVlP~l~~~s~w~D~-S~F~dIfD~~hFi~~L~~dVrIvk~LP~ 120 (475)
.+..||+... ..|+..+-..++=|..+|-.+|-||||-.-. |.-. ..|+++|+. +...+... |.
T Consensus 143 s~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~s~~C~~~-------~~ 209 (526)
T 2de0_X 143 SKAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--VSETCTDR-------SG 209 (526)
T ss_dssp GGSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--SCSSCCCC-------CC
T ss_pred CCCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--cCccccCC-------Cc
Confidence 3457888876 5799999889999999999999999995432 4332 467777764 11111110 00
Q ss_pred hhhhhhhhhhcccccccCCCCCCChhHHHhhhhHhHhhcceEEEeccc--CC---CcCCCCChhh----hhhccc-----
Q 011897 121 KLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFG--NR---LAFDPIPFQL----QRLRCR----- 186 (475)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~s~~~~Y~~~ilP~l~k~~Vi~l~~~~--~r---La~~~~p~~i----QrLRCr----- 186 (475)
+ ....|..... -..+.||.+...+ ++ .....+|.++ +++.-.
T Consensus 210 -----------~-----~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~ 265 (526)
T 2de0_X 210 -----------I-----STGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWW 265 (526)
T ss_dssp -----------S-----CCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHH
T ss_pred -----------c-----ccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHH
Confidence 0 0011221100 1245555543322 11 1111345442 333210
Q ss_pred --ccc-cccccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccchhhhhhhcccccCCceEEEeeehhhhhhhhcccc
Q 011897 187 --CNF-HALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCE 263 (475)
Q Consensus 187 --vnf-~ALrF~p~I~~lg~~lV~Rlr~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ylAlHLR~E~DMlA~sgC~ 263 (475)
..+ .-+|+.++|++..+.+.+.+.- ++|.|+||.|-= |-++. .
T Consensus 266 ~~q~~~yl~rP~~~i~~~I~~~~~~l~~------------------------------~~piVGVHIRrG-Dk~~~---E 311 (526)
T 2de0_X 266 VSQFVKYLIRPQPWLEKEIEEATKKLGF------------------------------KHPVIGVHVRRT-DKVGT---E 311 (526)
T ss_dssp HHHHHHHHTCBCHHHHHHHHHHHHHHTC------------------------------CSSEEEEEECCC---------C
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC------------------------------CCCEEEEEEeCC-CCCcc---c
Confidence 011 1378899998887777666532 258999999964 33321 1
Q ss_pred CCCChhHHHHHHHHHHhhhhhhhhhhcCCCCCChHhhhcCCCCcCCHHHHHHHHHHcCCCCCcEEEEEeccccCccccch
Q 011897 264 FGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLG 343 (475)
Q Consensus 264 ~gg~~~E~~eL~~~R~~~~p~~~~~~~~~k~i~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~m~ 343 (475)
....+. +.|-...-.++ -.|+....+..+.||||+-+. ..++
T Consensus 312 ~~~~~~-----~~Y~~~v~~~~-----------------------------~~l~~~~~~~~~~ifLATDDp----~v~~ 353 (526)
T 2de0_X 312 AAFHPI-----EEYMVHVEEHF-----------------------------QLLARRMQVDKKRVYLATDDP----SLLK 353 (526)
T ss_dssp CCSCSH-----HHHHHHHHHHH-----------------------------HHHHTTSCCSSCEEEEEESCH----HHHH
T ss_pred cccCCH-----HHHHHHHHHHH-----------------------------HHHHhhcCCCCCeEEEEcCCH----HHHH
Confidence 111111 11111000000 012233467789999998764 4467
Q ss_pred HHHhhCCCc--cccccCCCcccc-cccccccccchhhheeeeccCceeeecCCCCchhhhhhhhhhhc
Q 011897 344 ALNSLYPYL--VTKENLLSATEL-EPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYY 408 (475)
Q Consensus 344 ~L~~~FPnl--~tKetL~s~eEL-~pf~~~ss~~AALDy~V~~~SDvFv~t~~G~nf~~~V~GhR~y~ 408 (475)
-+++.||+. ++.........+ ..+...+..-+.+|.++.+++|+||+|.++ |++.++...+.-.
T Consensus 354 e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~cd~~Vgt~sS-~~srla~~l~~~~ 420 (526)
T 2de0_X 354 EAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFSS-QVCRVAYEIMQTL 420 (526)
T ss_dssp HHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHSSEEEECTTS-HHHHHHHHHHTTS
T ss_pred HHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcCCeeecCCCC-HHHHHHHHHhcCc
Confidence 778889985 332222111111 111111123588999999999999999765 7998887766433
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=30.57 E-value=22 Score=26.04 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=18.6
Q ss_pred ccccchhHHHHHHHHHHHHhc
Q 011897 191 ALQFAPKIQETGALLLRRLRK 211 (475)
Q Consensus 191 ALrF~p~I~~lg~~lV~Rlr~ 211 (475)
++-|+.-+.++|.++|+||++
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKt 22 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRS 22 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHHHc
Confidence 456788899999999999998
No 6
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=27.33 E-value=61 Score=28.15 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=21.6
Q ss_pred CCcCCHHHHHHHHHHcCCCCCcEEEEEec
Q 011897 305 LCPLTPEEAVLMLAALGFNRKTHVFVAGA 333 (475)
Q Consensus 305 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g 333 (475)
.||||+||+...|+.|--+. ...||...
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~-~~~yi~i~ 44 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPT-NKLFIKIC 44 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSS-CEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCc-ceeeeeeh
Confidence 69999999999999987544 35565544
No 7
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=20.53 E-value=1.1e+02 Score=23.74 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=23.3
Q ss_pred CCCChHhhhcCCCCcCCHHHHHHHHHHcC-CC
Q 011897 293 KLPSPAEIRSEGLCPLTPEEAVLMLAALG-FN 323 (475)
Q Consensus 293 k~i~~~~~R~~G~CPLtPeEvgl~L~alG-f~ 323 (475)
-.|+.++.|. .||++|+--+++.+. ++
T Consensus 24 G~It~~eLr~----~lt~eevd~~i~~~d~~d 51 (75)
T 1h8b_A 24 PYILAEELRR----ELPPDQAQYCIKRMPAYS 51 (75)
T ss_dssp SSBCHHHHHH----HSCHHHHHHHHHHSCSCC
T ss_pred CCcCHHHHHh----cCCHHHHHHHHHhcCccc
Confidence 3689999887 699999999999987 55
No 8
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=17.21 E-value=63 Score=24.23 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=16.3
Q ss_pred CCCCcCCHHHHHHHHHHc
Q 011897 303 EGLCPLTPEEAVLMLAAL 320 (475)
Q Consensus 303 ~G~CPLtPeEvgl~L~al 320 (475)
+...|.|+||..+|++++
T Consensus 10 ~~~~~WT~eE~~~F~~~~ 27 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKF 27 (61)
T ss_dssp SCCCSCCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHH
Confidence 567899999999999998
No 9
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=16.39 E-value=46 Score=25.20 Aligned_cols=12 Identities=25% Similarity=0.719 Sum_probs=10.4
Q ss_pred cchHHHhhCCCc
Q 011897 341 RLGALNSLYPYL 352 (475)
Q Consensus 341 ~m~~L~~~FPnl 352 (475)
.+..|++|||++
T Consensus 15 ~~~~L~~MFP~l 26 (54)
T 1p3q_Q 15 TLNTLQNMFPDM 26 (54)
T ss_dssp HHHHHHHHSTTS
T ss_pred HHHHHHHHcccC
Confidence 477899999998
No 10
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=15.84 E-value=56 Score=28.27 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=16.9
Q ss_pred cCCHHHHHHHHHHcCCCCC
Q 011897 307 PLTPEEAVLMLAALGFNRK 325 (475)
Q Consensus 307 PLtPeEvgl~L~alGf~~~ 325 (475)
.|-|.||+.+|...||..+
T Consensus 2 YLRPDEVArVLEk~GF~~D 20 (124)
T 2g7j_A 2 YLRPDEVARVLEKAGFTVD 20 (124)
T ss_dssp CCCHHHHHHHHHHTTCEEE
T ss_pred CcChHHHHHHHHHcCceEE
Confidence 3789999999999999875
Done!