Query 011897
Match_columns 475
No_of_seqs 138 out of 399
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 17:32:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011897.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011897hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ihoa2 d.3.1.18 (A:156-293) A 47.6 1.1 8.3E-05 37.3 -1.3 35 78-112 32-71 (138)
2 d1l5ia_ d.89.1.4 (A:) DNA-bind 35.9 16 0.0012 29.7 4.2 28 305-333 17-44 (118)
3 d1oqya2 a.5.2.1 (A:317-360) DN 22.4 5.6 0.00041 27.4 -1.0 25 309-333 1-29 (44)
4 d2g7ja1 d.198.5.1 (A:1-112) Pu 16.3 24 0.0018 28.0 1.4 19 307-325 2-20 (112)
5 d1vjna_ d.157.1.4 (A:) Hypothe 15.2 81 0.0059 26.6 4.9 54 48-110 130-184 (209)
6 d1jjcb2 a.6.1.1 (B:400-474) Do 15.0 41 0.003 24.5 2.4 24 300-324 13-36 (75)
7 d1okga1 c.46.1.2 (A:7-162) 3-m 14.1 73 0.0053 26.2 4.1 30 302-331 65-95 (156)
8 d1mn3a_ a.5.2.4 (A:) Vacuolar 13.6 23 0.0017 25.1 0.5 14 340-353 14-27 (54)
9 d1wgla_ a.5.2.4 (A:) Toll-inte 13.6 25 0.0018 25.3 0.7 48 339-391 10-57 (59)
10 d1sfsa_ c.1.8.8 (A:) Unnamed h 13.6 40 0.0029 29.9 2.3 21 313-333 81-101 (213)
No 1
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=47.64 E-value=1.1 Score=37.28 Aligned_cols=35 Identities=23% Similarity=0.577 Sum_probs=29.8
Q ss_pred EeecccccCCcccCC-----CCCCcccchHHHHHhccCCc
Q 011897 78 LVVPKFMYSSVWRDV-----SQFSDIYQEEHFINYLTPDI 112 (475)
Q Consensus 78 LVlP~l~~~s~w~D~-----S~F~dIfD~~hFi~~L~~dV 112 (475)
||||...-++.|+++ -.=+.|||-|.|--..|..|
T Consensus 32 LVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 32 LVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp ECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 999999999999997 25678999999988776653
No 2
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=35.91 E-value=16 Score=29.72 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=21.7
Q ss_pred CCcCCHHHHHHHHHHcCCCCCcEEEEEec
Q 011897 305 LCPLTPEEAVLMLAALGFNRKTHVFVAGA 333 (475)
Q Consensus 305 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g 333 (475)
+|||||||+...|+.|==+.+. .||..+
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~ 44 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKIC 44 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEc
Confidence 6999999999999998655544 566543
No 3
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.40 E-value=5.6 Score=27.41 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=17.4
Q ss_pred CHHHHH--HHHHHcCCCCCcE--EEEEec
Q 011897 309 TPEEAV--LMLAALGFNRKTH--VFVAGA 333 (475)
Q Consensus 309 tPeEvg--l~L~alGf~~~T~--IYlA~g 333 (475)
||+|.. -=|.+|||+++.. +|+|-.
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACd 29 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACE 29 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 566644 4588999999864 576654
No 4
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=16.26 E-value=24 Score=28.02 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=16.8
Q ss_pred cCCHHHHHHHHHHcCCCCC
Q 011897 307 PLTPEEAVLMLAALGFNRK 325 (475)
Q Consensus 307 PLtPeEvgl~L~alGf~~~ 325 (475)
.|-|.||+.+|+..||..+
T Consensus 2 YLRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 2 YLRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCCHHHHHHHHHHTTCEEE
T ss_pred CcChHHHHHHHHHcCceEE
Confidence 3789999999999999764
No 5
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=15.19 E-value=81 Score=26.60 Aligned_cols=54 Identities=22% Similarity=0.471 Sum_probs=34.1
Q ss_pred EEEEEecCchhhHHHHHHHHHHHHHHhcCeEeecccccCCcccC-CCCCCcccchHHHHHhccC
Q 011897 48 YILVTANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRD-VSQFSDIYQEEHFINYLTP 110 (475)
Q Consensus 48 yl~v~~nGGlnq~R~~IcdaVavArlLNATLVlP~l~~~s~w~D-~S~F~dIfD~~hFi~~L~~ 110 (475)
.+++.+.|.. ...--+|+.+|+.|++-.|||-= |.. ...| ++=..|.|++.++.
T Consensus 130 va~lpigg~~---~m~~~ea~~~~~~l~pk~viP~H-----~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 130 VLLVPVGGTY---TIGPKEAKEVADLLNAKVIIPMH-----YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp EEEEECCSSS---SCCHHHHHHHHHHTTCSEEEEES-----CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred EEEEecCCcc---ccCHHHHHHHHHHhCCCEEEEec-----cCCccccc-CcCCHHHHHHHhhh
Confidence 4445544332 23456889999999999999952 322 2222 34556788887664
No 6
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=15.03 E-value=41 Score=24.52 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=19.8
Q ss_pred hhcCCCCcCCHHHHHHHHHHcCCCC
Q 011897 300 IRSEGLCPLTPEEAVLMLAALGFNR 324 (475)
Q Consensus 300 ~R~~G~CPLtPeEvgl~L~alGf~~ 324 (475)
.+..|.. ++++|+..+|+.|||.-
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~~ 36 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCRV 36 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCEE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCce
Confidence 3555666 99999999999999963
No 7
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}
Probab=14.07 E-value=73 Score=26.25 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=23.4
Q ss_pred cCCCCcC-CHHHHHHHHHHcCCCCCcEEEEE
Q 011897 302 SEGLCPL-TPEEAVLMLAALGFNRKTHVFVA 331 (475)
Q Consensus 302 ~~G~CPL-tPeEvgl~L~alGf~~~T~IYlA 331 (475)
..|.=|| +|++....|+++|+.++|.|-|=
T Consensus 65 ~~~~~~lP~~~~~~~~l~~lGI~~~~~VVvY 95 (156)
T d1okga1 65 STARHPLPPCAEFIDWCMANGMAGELPVLCY 95 (156)
T ss_dssp CCCSSCCCCHHHHHHHHHHTTCSSSSCEEEE
T ss_pred CCCccccCCHHHHHHHHHhccccCCceEEEE
Confidence 3344344 79999999999999999987663
No 8
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.61 E-value=23 Score=25.06 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.2
Q ss_pred ccchHHHhhCCCcc
Q 011897 340 RRLGALNSLYPYLV 353 (475)
Q Consensus 340 ~~m~~L~~~FPnl~ 353 (475)
..+..|++|||++-
T Consensus 14 e~~~~Lk~MFP~~D 27 (54)
T d1mn3a_ 14 DTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHCTTSC
T ss_pred HHHHHHHHHCCCCC
Confidence 34788999999873
No 9
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.61 E-value=25 Score=25.29 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=28.3
Q ss_pred cccchHHHhhCCCccccccCCCcccccccccccccchhhheeeeccCceeeec
Q 011897 339 TRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMT 391 (475)
Q Consensus 339 ~~~m~~L~~~FPnl~tKetL~s~eEL~pf~~~ss~~AALDy~V~~~SDvFv~t 391 (475)
+..+.-|++|||++-.. .+- .=|. .+..+.-+|+|=..-+.-+.|-|+
T Consensus 10 Ee~i~~LkeMFP~~D~~-vI~--~VL~--a~~G~vd~aid~LL~Msd~~~gp~ 57 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMDQE-VIR--SVLE--AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHHCSSSCHH-HHH--HHHT--TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHHCCCCCHH-HHH--HHHH--HcCCCHHHHHHHHHhcCCCCcCCC
Confidence 45689999999998432 111 1111 224456677777766666665443
No 10
>d1sfsa_ c.1.8.8 (A:) Unnamed hypothetical protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=13.56 E-value=40 Score=29.86 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=17.3
Q ss_pred HHHHHHHcCCCCCcEEEEEec
Q 011897 313 AVLMLAALGFNRKTHVFVAGA 333 (475)
Q Consensus 313 vgl~L~alGf~~~T~IYlA~g 333 (475)
+.-.-++|||++.|.||++-=
T Consensus 81 A~~~A~~lGfp~gt~Iy~dve 101 (213)
T d1sfsa_ 81 AVFHARRLGIPKNKLLFANIE 101 (213)
T ss_dssp HHHHHHHTTCCSSCEEEEECC
T ss_pred HHHHHHHcCCCCCCEEEEEec
Confidence 344668899999999999875
Done!