Query 011898
Match_columns 475
No_of_seqs 216 out of 1183
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:26:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1321 Protoheme ferro-lyase 100.0 4E-109 8E-114 815.8 32.8 354 95-455 34-392 (395)
2 PLN02449 ferrochelatase 100.0 3E-102 6E-107 820.5 44.6 388 86-473 76-483 (485)
3 COG0276 HemH Protoheme ferro-l 100.0 9.5E-95 2.1E-99 729.1 36.8 317 96-424 2-319 (320)
4 PF00762 Ferrochelatase: Ferro 100.0 3.1E-93 6.7E-98 723.9 31.8 316 99-423 1-316 (316)
5 TIGR00109 hemH ferrochelatase. 100.0 2.9E-90 6.2E-95 703.9 37.2 320 96-423 2-321 (322)
6 PRK12435 ferrochelatase; Provi 100.0 8.3E-86 1.8E-90 667.9 36.9 302 96-424 1-308 (311)
7 PRK00035 hemH ferrochelatase; 100.0 6.8E-83 1.5E-87 651.2 39.6 322 97-426 3-326 (333)
8 cd03411 Ferrochelatase_N Ferro 100.0 8.4E-44 1.8E-48 328.7 17.1 159 100-263 1-159 (159)
9 cd00419 Ferrochelatase_C Ferro 100.0 1.9E-39 4.2E-44 292.7 16.4 134 268-406 1-135 (135)
10 PRK02395 hypothetical protein; 99.7 1.9E-14 4.2E-19 144.5 23.7 234 162-425 7-262 (279)
11 PLN02757 sirohydrochlorine fer 99.3 4.6E-11 9.9E-16 110.6 15.4 139 285-446 12-152 (154)
12 cd03409 Chelatase_Class_II Cla 99.3 1.6E-11 3.4E-16 103.9 10.7 87 289-392 2-88 (101)
13 cd03409 Chelatase_Class_II Cla 99.2 7E-11 1.5E-15 99.9 11.3 75 166-245 13-89 (101)
14 COG2138 Sirohydrochlorin ferro 99.2 1.3E-09 2.7E-14 108.1 19.6 232 162-424 8-241 (245)
15 PF06180 CbiK: Cobalt chelatas 99.0 1.3E-08 2.8E-13 101.9 18.9 214 180-423 24-261 (262)
16 PLN02757 sirohydrochlorine fer 98.9 8.5E-08 1.8E-12 88.9 15.4 115 162-281 19-135 (154)
17 PRK00923 sirohydrochlorin coba 98.8 2.4E-08 5.2E-13 88.6 10.8 110 163-277 8-126 (126)
18 cd03414 CbiX_SirB_C Sirohydroc 98.8 1.1E-07 2.5E-12 82.9 14.3 115 288-422 2-116 (117)
19 cd03415 CbiX_CbiC Archaeal sir 98.8 1.1E-07 2.4E-12 85.2 12.9 109 162-276 6-124 (125)
20 cd03414 CbiX_SirB_C Sirohydroc 98.7 1.9E-07 4.2E-12 81.4 12.8 109 163-277 7-116 (117)
21 PRK00923 sirohydrochlorin coba 98.7 1.7E-07 3.6E-12 83.2 11.8 116 287-421 2-125 (126)
22 cd03415 CbiX_CbiC Archaeal sir 98.7 2.8E-07 6E-12 82.7 12.9 114 287-421 1-124 (125)
23 COG4822 CbiK Cobalamin biosynt 98.5 1.4E-05 3E-10 77.4 19.7 195 197-425 58-259 (265)
24 PF01903 CbiX: CbiX; InterPro 98.5 2.5E-07 5.5E-12 79.1 5.8 93 175-272 11-105 (105)
25 PRK05782 bifunctional sirohydr 98.4 2E-06 4.4E-11 88.9 12.7 114 162-281 12-135 (335)
26 PRK05782 bifunctional sirohydr 98.4 5.4E-06 1.2E-10 85.8 14.1 119 287-426 7-135 (335)
27 PF01903 CbiX: CbiX; InterPro 98.3 1.2E-06 2.5E-11 74.9 6.9 98 308-417 8-105 (105)
28 cd03412 CbiK_N Anaerobic cobal 98.3 1.4E-05 3.1E-10 71.6 13.6 119 288-422 2-126 (127)
29 cd03412 CbiK_N Anaerobic cobal 98.3 1.1E-05 2.4E-10 72.3 12.5 105 165-276 9-125 (127)
30 cd03416 CbiX_SirB_N Sirohydroc 98.1 3.1E-05 6.6E-10 65.9 11.1 100 289-406 2-101 (101)
31 cd03416 CbiX_SirB_N Sirohydroc 98.1 4.4E-05 9.6E-10 64.9 10.9 94 163-260 6-100 (101)
32 PRK00035 hemH ferrochelatase; 97.8 0.00036 7.8E-09 71.9 13.8 104 312-424 76-181 (333)
33 PRK12435 ferrochelatase; Provi 97.7 0.00045 9.7E-09 71.0 12.9 142 306-457 53-211 (311)
34 TIGR00109 hemH ferrochelatase. 97.6 0.00087 1.9E-08 69.1 12.9 109 164-278 205-321 (322)
35 PRK02395 hypothetical protein; 97.5 0.0011 2.4E-08 66.9 12.1 112 163-281 142-263 (279)
36 cd03413 CbiK_C Anaerobic cobal 97.5 0.00092 2E-08 58.0 9.6 88 288-397 2-94 (103)
37 PLN02449 ferrochelatase 97.5 0.0013 2.9E-08 71.2 12.8 114 164-280 294-415 (485)
38 PF00762 Ferrochelatase: Ferro 97.4 0.0012 2.7E-08 67.9 11.6 113 304-426 63-178 (316)
39 cd03413 CbiK_C Anaerobic cobal 97.3 0.00088 1.9E-08 58.1 7.5 62 162-226 6-67 (103)
40 COG0276 HemH Protoheme ferro-l 97.3 0.0039 8.5E-08 64.3 13.0 102 310-426 73-180 (320)
41 COG2138 Sirohydrochlorin ferro 97.2 0.0014 3E-08 65.4 9.0 117 288-425 4-120 (245)
42 cd00419 Ferrochelatase_C Ferro 96.1 0.074 1.6E-06 48.3 10.9 61 165-227 36-104 (135)
43 cd03411 Ferrochelatase_N Ferro 94.6 0.32 6.9E-06 45.1 10.1 58 307-371 65-122 (159)
44 KOG1321 Protoheme ferro-lyase 94.5 0.34 7.4E-06 50.0 10.8 78 346-426 138-220 (395)
45 PF06180 CbiK: Cobalt chelatas 94.5 0.12 2.7E-06 52.0 7.7 106 163-279 148-262 (262)
46 COG4822 CbiK Cobalamin biosynt 92.1 1.9 4.1E-05 42.6 11.1 87 191-280 169-259 (265)
47 PRK10481 hypothetical protein; 87.0 6 0.00013 39.2 10.4 132 189-379 65-200 (224)
48 TIGR00640 acid_CoA_mut_C methy 82.3 6.9 0.00015 35.4 7.9 104 101-219 4-110 (132)
49 PF01297 TroA: Periplasmic sol 80.5 16 0.00035 35.9 10.5 199 163-420 28-250 (256)
50 PF04748 Polysacc_deac_2: Dive 74.5 68 0.0015 31.4 12.8 88 189-276 20-117 (213)
51 PF06309 Torsin: Torsin; Inte 71.6 13 0.00028 33.8 6.4 67 261-340 28-94 (127)
52 cd07948 DRE_TIM_HCS Saccharomy 66.6 1.5E+02 0.0032 29.9 13.8 150 200-378 71-228 (262)
53 PF05990 DUF900: Alpha/beta hy 65.7 79 0.0017 31.1 11.2 133 269-418 3-149 (233)
54 cd01994 Alpha_ANH_like_IV This 65.2 1.3E+02 0.0029 28.8 13.5 126 207-367 16-143 (194)
55 PRK03906 mannonate dehydratase 64.2 12 0.00025 40.1 5.4 66 344-411 6-71 (385)
56 TIGR00262 trpA tryptophan synt 63.5 1.7E+02 0.0036 29.4 16.8 207 100-368 11-227 (256)
57 PTZ00322 6-phosphofructo-2-kin 62.6 55 0.0012 37.3 10.7 132 161-301 437-592 (664)
58 COG2861 Uncharacterized protei 62.1 1.7E+02 0.0038 29.5 12.7 167 189-371 52-241 (250)
59 COG0406 phoE Broad specificity 59.9 1.5E+02 0.0033 27.8 11.8 53 165-222 26-81 (208)
60 PRK05628 coproporphyrinogen II 59.4 2.3E+02 0.005 29.6 17.1 118 264-397 36-159 (375)
61 cd03174 DRE_TIM_metallolyase D 58.5 1.8E+02 0.004 28.2 14.4 146 204-379 77-235 (265)
62 PF04273 DUF442: Putative phos 57.7 43 0.00094 29.4 6.9 66 350-421 16-84 (110)
63 cd01020 TroA_b Metal binding p 57.2 1.2E+02 0.0026 30.2 10.9 196 168-419 39-256 (264)
64 TIGR00539 hemN_rel putative ox 54.3 2.7E+02 0.0059 28.9 16.9 138 264-418 30-176 (360)
65 PF06925 MGDG_synth: Monogalac 54.1 1.3E+02 0.0029 27.6 10.0 37 175-211 4-43 (169)
66 TIGR00290 MJ0570_dom MJ0570-re 53.9 1.5E+02 0.0033 29.3 10.8 121 208-367 18-140 (223)
67 TIGR00695 uxuA mannonate dehyd 53.6 23 0.0005 38.0 5.4 66 344-411 6-71 (394)
68 cd07910 MiaE MiaE tRNA-modifyi 51.6 4 8.6E-05 39.1 -0.6 59 253-316 37-95 (180)
69 COG0621 MiaB 2-methylthioadeni 50.7 80 0.0017 34.4 9.0 58 307-370 276-334 (437)
70 PRK06582 coproporphyrinogen II 49.3 3.5E+02 0.0076 28.7 17.0 165 162-338 68-249 (390)
71 COG0761 lytB 4-Hydroxy-3-methy 49.1 32 0.00069 35.4 5.3 18 284-301 65-82 (294)
72 PLN02591 tryptophan synthase 49.0 1.5E+02 0.0032 29.8 10.1 72 332-418 82-153 (250)
73 COG1453 Predicted oxidoreducta 47.9 2.6E+02 0.0057 30.1 11.9 72 170-245 30-105 (391)
74 PRK13111 trpA tryptophan synth 46.7 1.7E+02 0.0037 29.5 10.1 62 347-418 103-164 (258)
75 COG1636 Uncharacterized protei 45.7 85 0.0018 30.6 7.3 104 347-465 13-123 (204)
76 TIGR02090 LEU1_arch isopropylm 45.3 3.9E+02 0.0084 28.1 14.7 142 159-323 36-183 (363)
77 cd07940 DRE_TIM_IPMS 2-isoprop 44.4 3.3E+02 0.0072 27.1 14.7 155 197-379 69-234 (268)
78 PF08645 PNK3P: Polynucleotide 43.9 65 0.0014 29.8 6.2 63 344-406 28-92 (159)
79 PRK09426 methylmalonyl-CoA mut 43.9 84 0.0018 36.4 8.3 109 97-219 580-690 (714)
80 PRK08207 coproporphyrinogen II 43.6 4.9E+02 0.011 28.7 16.0 161 162-332 224-400 (488)
81 PF08915 tRNA-Thr_ED: Archaea- 43.2 86 0.0019 28.9 6.7 45 358-403 68-115 (138)
82 TIGR03856 F420_MSMEG_2906 prob 42.9 1.6E+02 0.0036 29.2 9.3 85 287-382 151-243 (249)
83 PRK07379 coproporphyrinogen II 42.3 4.5E+02 0.0097 27.9 16.2 164 162-334 72-250 (400)
84 COG4750 LicC CTP:phosphocholin 42.2 28 0.00061 34.1 3.5 48 163-225 9-56 (231)
85 cd03174 DRE_TIM_metallolyase D 40.5 1.2E+02 0.0026 29.5 7.9 44 180-223 121-168 (265)
86 PRK05660 HemN family oxidoredu 39.9 4.7E+02 0.01 27.5 16.4 117 264-397 37-158 (378)
87 PRK13347 coproporphyrinogen II 39.7 5.2E+02 0.011 27.9 16.5 142 264-421 81-230 (453)
88 cd06595 GH31_xylosidase_XylS-l 39.5 2.3E+02 0.0049 28.8 9.9 68 348-423 74-145 (292)
89 PRK13125 trpA tryptophan synth 39.1 2.1E+02 0.0045 28.2 9.3 63 349-418 89-151 (244)
90 PRK08599 coproporphyrinogen II 38.5 4.8E+02 0.01 27.2 16.4 140 264-421 31-178 (377)
91 CHL00200 trpA tryptophan synth 38.3 4.4E+02 0.0094 26.7 16.7 206 100-367 16-230 (263)
92 PF13380 CoA_binding_2: CoA bi 38.3 50 0.0011 28.9 4.3 38 349-397 67-104 (116)
93 PRK05799 coproporphyrinogen II 37.9 4.9E+02 0.011 27.1 16.7 169 162-339 57-239 (374)
94 PF13684 Dak1_2: Dihydroxyacet 37.1 47 0.001 34.4 4.5 46 177-223 106-151 (313)
95 COG1312 UxuA D-mannonate dehyd 36.3 43 0.00093 35.3 4.0 66 344-411 6-71 (362)
96 cd02072 Glm_B12_BD B12 binding 36.2 78 0.0017 28.7 5.2 83 127-219 28-113 (128)
97 KOG2233 Alpha-N-acetylglucosam 34.7 2.7E+02 0.0058 31.1 9.7 134 204-368 157-311 (666)
98 PRK14464 ribosomal RNA large s 34.0 5.9E+02 0.013 26.9 12.7 54 364-421 213-269 (344)
99 COG2896 MoaA Molybdenum cofact 33.9 3.2E+02 0.007 28.7 10.0 101 309-421 45-178 (322)
100 cd07939 DRE_TIM_NifV Streptomy 33.9 4.8E+02 0.01 25.8 14.9 147 204-378 72-226 (259)
101 PRK07239 bifunctional uroporph 33.5 5.8E+02 0.013 26.6 16.0 47 175-221 21-71 (381)
102 PF03786 UxuA: D-mannonate deh 33.3 50 0.0011 35.0 4.0 66 344-411 6-73 (351)
103 cd00951 KDGDH 5-dehydro-4-deox 33.1 1.5E+02 0.0033 29.9 7.5 66 349-417 79-148 (289)
104 COG1509 KamA Lysine 2,3-aminom 33.1 5.1E+02 0.011 27.8 11.2 121 276-421 151-278 (369)
105 TIGR03470 HpnH hopanoid biosyn 32.9 4.4E+02 0.0096 27.0 10.9 64 348-416 178-247 (318)
106 cd06599 GH31_glycosidase_Aec37 32.1 5.3E+02 0.012 26.4 11.3 100 309-423 28-154 (317)
107 cd01017 AdcA Metal binding pro 31.7 5.4E+02 0.012 25.7 12.4 198 164-406 34-253 (282)
108 PF00701 DHDPS: Dihydrodipicol 31.4 4.9E+02 0.011 26.0 10.8 53 187-243 68-123 (289)
109 PRK04147 N-acetylneuraminate l 30.9 2.9E+02 0.0062 27.9 9.0 61 179-243 63-126 (293)
110 PRK04147 N-acetylneuraminate l 29.9 1.8E+02 0.0039 29.4 7.3 137 254-417 9-156 (293)
111 cd06592 GH31_glucosidase_KIAA1 29.8 1.2E+02 0.0027 30.8 6.2 100 309-423 29-151 (303)
112 KOG0460 Mitochondrial translat 29.8 1.1E+02 0.0024 32.7 5.7 50 348-397 156-206 (449)
113 PF13204 DUF4038: Protein of u 29.8 2.7E+02 0.0058 28.3 8.6 87 203-298 90-189 (289)
114 PRK14457 ribosomal RNA large s 29.8 2.9E+02 0.0063 29.1 9.0 150 99-263 149-331 (345)
115 PF08029 HisG_C: HisG, C-termi 29.5 51 0.0011 27.1 2.7 24 200-223 49-72 (75)
116 PRK12677 xylose isomerase; Pro 29.4 1.8E+02 0.004 30.9 7.6 64 331-397 12-82 (384)
117 TIGR01019 sucCoAalpha succinyl 29.1 97 0.0021 31.8 5.2 44 347-397 73-116 (286)
118 PRK06294 coproporphyrinogen II 29.0 6.9E+02 0.015 26.2 16.7 164 163-338 65-242 (370)
119 TIGR02717 AcCoA-syn-alpha acet 28.9 1.3E+02 0.0028 32.6 6.4 49 348-397 75-123 (447)
120 cd00952 CHBPH_aldolase Trans-o 28.7 1.7E+02 0.0037 30.0 7.0 93 309-416 60-160 (309)
121 TIGR03249 KdgD 5-dehydro-4-deo 28.7 2E+02 0.0044 29.1 7.5 92 310-417 58-153 (296)
122 CHL00200 trpA tryptophan synth 28.4 5.1E+02 0.011 26.1 10.2 74 332-420 95-168 (263)
123 PF00532 Peripla_BP_1: Peripla 27.9 4.4E+02 0.0096 26.1 9.7 77 172-264 16-92 (279)
124 TIGR03822 AblA_like_2 lysine-2 27.4 7E+02 0.015 25.7 13.0 107 304-421 144-256 (321)
125 cd00408 DHDPS-like Dihydrodipi 27.2 3.4E+02 0.0074 26.9 8.7 51 188-242 65-118 (281)
126 PRK03620 5-dehydro-4-deoxygluc 26.9 3.1E+02 0.0067 27.9 8.5 48 187-239 74-124 (303)
127 PRK09856 fructoselysine 3-epim 26.2 6.2E+02 0.013 24.7 17.3 154 198-365 10-176 (275)
128 PLN02417 dihydrodipicolinate s 26.0 3.8E+02 0.0082 27.0 8.9 63 175-241 56-121 (280)
129 PF03358 FMN_red: NADPH-depend 26.0 1.4E+02 0.0031 26.4 5.2 29 165-193 8-37 (152)
130 PF02645 DegV: Uncharacterised 26.0 3.6E+02 0.0078 27.0 8.7 59 199-265 61-122 (280)
131 cd06360 PBP1_alkylbenzenes_lik 25.8 6.5E+02 0.014 24.8 11.0 51 171-221 146-196 (336)
132 TIGR00262 trpA tryptophan synt 25.8 5E+02 0.011 25.9 9.6 61 349-419 103-163 (256)
133 PRK06886 hypothetical protein; 25.7 7.8E+02 0.017 25.7 12.2 61 304-371 185-245 (329)
134 PF07799 DUF1643: Protein of u 25.7 4.5E+02 0.0097 23.3 8.4 62 198-266 29-100 (136)
135 TIGR02313 HpaI-NOT-DapA 2,4-di 25.5 3.8E+02 0.0083 27.2 8.9 63 177-243 57-122 (294)
136 PRK07379 coproporphyrinogen II 25.5 8.3E+02 0.018 25.9 16.9 130 264-412 47-184 (400)
137 PRK05678 succinyl-CoA syntheta 25.5 1.2E+02 0.0026 31.2 5.1 44 347-397 75-118 (291)
138 TIGR00683 nanA N-acetylneurami 25.1 4.7E+02 0.01 26.5 9.4 57 183-243 64-123 (290)
139 PRK10076 pyruvate formate lyas 24.7 3.5E+02 0.0075 26.4 8.0 35 387-421 119-156 (213)
140 TIGR03599 YloV DAK2 domain fus 23.9 1.1E+02 0.0024 34.1 4.9 48 176-224 323-370 (530)
141 PRK13111 trpA tryptophan synth 23.7 7.3E+02 0.016 24.9 10.3 105 100-223 13-126 (258)
142 COG0474 MgtA Cation transport 23.6 1E+02 0.0022 36.7 4.7 53 333-397 535-587 (917)
143 cd01335 Radical_SAM Radical SA 23.6 5.1E+02 0.011 22.7 13.7 105 305-421 53-167 (204)
144 PRK10834 vancomycin high tempe 23.4 5E+02 0.011 26.1 8.9 103 266-400 62-166 (239)
145 PRK14340 (dimethylallyl)adenos 23.4 7E+02 0.015 27.0 10.8 77 288-370 260-337 (445)
146 PRK14465 ribosomal RNA large s 23.3 4.1E+02 0.0089 28.0 8.7 176 52-276 94-282 (342)
147 cd03145 GAT1_cyanophycinase Ty 23.1 4E+02 0.0087 25.7 8.1 35 363-402 30-64 (217)
148 cd07938 DRE_TIM_HMGL 3-hydroxy 23.1 7.7E+02 0.017 24.8 10.4 51 171-221 111-169 (274)
149 PRK13463 phosphatase PhoE; Pro 22.7 5.5E+02 0.012 24.2 8.9 124 165-301 26-158 (203)
150 COG1350 Predicted alternative 22.6 2.7E+02 0.0059 29.7 7.0 67 153-227 66-139 (432)
151 PF14606 Lipase_GDSL_3: GDSL-l 22.6 1.4E+02 0.003 28.6 4.7 83 166-262 19-104 (178)
152 cd00954 NAL N-Acetylneuraminic 22.4 3.2E+02 0.007 27.5 7.6 67 348-417 80-154 (288)
153 COG0050 TufB GTPases - transla 22.3 3E+02 0.0066 29.0 7.2 72 348-419 114-193 (394)
154 KOG1322 GDP-mannose pyrophosph 22.3 3.1E+02 0.0066 29.2 7.3 77 192-282 35-111 (371)
155 cd06335 PBP1_ABC_ligand_bindin 22.2 4.3E+02 0.0092 26.7 8.5 51 171-221 150-200 (347)
156 TIGR00674 dapA dihydrodipicoli 22.2 4.5E+02 0.0098 26.3 8.6 70 172-245 50-122 (285)
157 TIGR02631 xylA_Arthro xylose i 22.0 2.2E+02 0.0048 30.3 6.6 65 331-397 13-83 (382)
158 TIGR03821 AblA_like_1 lysine-2 21.9 3.6E+02 0.0079 27.9 8.0 68 350-421 192-262 (321)
159 cd06602 GH31_MGAM_SI_GAA This 21.8 2.4E+02 0.0053 29.3 6.7 64 309-376 23-94 (339)
160 TIGR00048 radical SAM enzyme, 21.8 9.5E+02 0.021 25.3 11.8 107 305-422 165-286 (355)
161 TIGR01512 ATPase-IB2_Cd heavy 21.7 1.2E+02 0.0027 33.4 4.7 43 346-399 363-405 (536)
162 PF02677 DUF208: Uncharacteriz 21.6 2.2E+02 0.0049 27.3 5.8 102 347-465 8-117 (176)
163 PF06175 MiaE: tRNA-(MS[2]IO[6 21.6 16 0.00034 36.6 -2.0 56 254-314 90-145 (240)
164 PRK14457 ribosomal RNA large s 21.5 9.6E+02 0.021 25.2 14.6 37 386-422 244-283 (345)
165 cd00954 NAL N-Acetylneuraminic 21.4 6.4E+02 0.014 25.3 9.5 62 177-242 58-122 (288)
166 PRK01355 azoreductase; Reviewe 21.4 4.8E+02 0.01 24.7 8.2 30 165-194 9-41 (199)
167 PRK03620 5-dehydro-4-deoxygluc 21.4 3.8E+02 0.0082 27.3 7.9 65 349-416 86-154 (303)
168 smart00729 Elp3 Elongator prot 21.2 3.5E+02 0.0077 24.2 7.0 43 183-226 145-192 (216)
169 TIGR03162 ribazole_cobC alpha- 21.2 4.8E+02 0.01 23.5 7.9 51 165-222 21-74 (177)
170 PF13579 Glyco_trans_4_4: Glyc 21.1 5E+02 0.011 21.8 7.9 23 348-371 138-160 (160)
171 PRK11145 pflA pyruvate formate 20.4 5.9E+02 0.013 24.6 8.8 103 304-421 78-190 (246)
172 cd00950 DHDPS Dihydrodipicolin 20.4 3E+02 0.0066 27.4 6.9 93 310-417 53-152 (284)
173 cd07372 2A5CPDO_B The beta sub 20.3 9.4E+02 0.02 24.6 11.6 21 375-395 160-180 (294)
174 PLN02727 NAD kinase 20.2 6E+02 0.013 30.7 9.8 113 331-455 241-366 (986)
No 1
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.6e-109 Score=815.83 Aligned_cols=354 Identities=51% Similarity=0.806 Sum_probs=344.1
Q ss_pred cCCCcEEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHH
Q 011898 95 AAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDE 174 (475)
Q Consensus 95 ~~~~k~aVLLlNlG~P~s~~dV~~FL~~~l~D~~Vi~lP~~~~~~~~~L~~~Ia~~R~~k~~~~Y~~IGggSPL~~~T~~ 174 (475)
..++||||||||||||++++||.+||.|+|.|++||+||+ ++|..|+++|+++|+||++++|+.|||||||+.||+.
T Consensus 34 ~~k~ktgilllNmGGP~~lddV~~FL~rLfaD~DiI~Lp~---~~Q~~lakfIak~RtPKvqe~Y~~IGGGSPir~wT~~ 110 (395)
T KOG1321|consen 34 QKKPKTGILLLNMGGPETLDDVQDFLYRLFADPDIIPLPA---FLQKTLAKFIAKRRTPKVQEQYREIGGGSPIRKWTEY 110 (395)
T ss_pred ccCCCceEEEEcCCCCcchhhHHHHHHHHhcCCCeeeCCH---HHHhhHHHHHHHhcCchHHHHHHhccCCCchhHHHHH
Confidence 4567999999999999999999999999999999999996 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC---CCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHHhccCCC
Q 011898 175 QAQALKTALEAKN---LPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSR 251 (475)
Q Consensus 175 qa~~L~~~L~~~~---~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~ 251 (475)
|++.|++.|++.. .++++|+|||||+|++||+++||+++|++|+|+||+||||||+|+||+++.+.+.+++....++
T Consensus 111 Q~~~m~k~Ld~~~petaphk~YVgfRY~~PlTEea~~qikkd~v~r~VafsqYPQyS~sTsGSSln~l~r~~r~~~~~~~ 190 (395)
T KOG1321|consen 111 QAEEMCKILDKKCPETAPHKPYVGFRYAHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYERD 190 (395)
T ss_pred HHHHHHHHHHhcCcccCCccceeeeeecCcccHHHHHHHHhcCceeEEeeccCCceeeecCcccHHHHHHHHHhcCcccC
Confidence 9999999999986 6899999999999999999999999999999999999999999999999999999999888889
Q ss_pred CCEEEeccCCCChHHHHHHHHHHHHHHhhcCCC--CceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCC
Q 011898 252 LPVSIIRSWYQREGYVNSMADLIQKELGKFQKP--EEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGIN 329 (475)
Q Consensus 252 ~~v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~--~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~ 329 (475)
++|++|++|+.|++||++++++|++.|++|+.+ ++++|+|||||+|+++|+ +||||+.|+++|+++|||+| ++.
T Consensus 191 ~~wsiIdrW~t~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAHslPms~Vn-~GDpY~~Ei~atv~~iMeeL---~~~ 266 (395)
T KOG1321|consen 191 IKWSIIDRWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSVVN-AGDPYPAEIAATVDLIMEEL---KYK 266 (395)
T ss_pred CceEeeccccccchHHHHHHHHHHHHHHhcCCcccccEEEEEecCCCcHHHHh-cCCCcHHHHHHHHHHHHHHh---ccC
Confidence 999999999999999999999999999999875 899999999999999996 89999999999999999999 777
Q ss_pred CCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCH
Q 011898 330 NDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTP 409 (475)
Q Consensus 330 ~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp 409 (475)
|+|+++||||+||.+||+|+|++++++|.++|.|++++|||+|++||||||+|||+||++++.+.|++++.|+|+||++|
T Consensus 267 N~y~lawQSkVGP~pWL~p~Tde~i~~lgk~g~knll~VPIaFvSeHIETL~EiD~ey~e~a~k~gve~~~Rv~sln~~p 346 (395)
T KOG1321|consen 267 NPYRLAWQSKVGPLPWLGPATDEVIEGLGKKGVKNLLLVPIAFVSEHIETLHEIDIEYIEEALKKGVENWKRVESLNGNP 346 (395)
T ss_pred CcchhhhhcccCCccccccchHHHHHHHHhhcccceEEEeehhhhHHHHHHHHhhHHHHHHHHHHhhhhheeccCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCccccCCCCCCCCCCCCChhHHHHHHHHHHH
Q 011898 410 SFITDLADAVIEALPSALAMSAPKNISQEDDHNPVRYAIKMFFGSI 455 (475)
Q Consensus 410 ~fI~aLadlV~e~l~~~~~~~~~~~~~c~~c~~~~~~~~k~~~~~~ 455 (475)
.||++|||+|.+||++.+++|.|+.++||+|.|+.|.++|.||++.
T Consensus 347 ~fI~~lADlV~ehL~s~~~~s~q~l~~~~~~~ne~~~e~~s~~~~~ 392 (395)
T KOG1321|consen 347 TFIEGLADLVAEHLKSNQAYSNQFLARCPGCSNEPCKEAKSWFGNH 392 (395)
T ss_pred cHHHHHHHHHHHhhhhhhhcchhhhhhCcCcCChhhhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999975
No 2
>PLN02449 ferrochelatase
Probab=100.00 E-value=3e-102 Score=820.52 Aligned_cols=388 Identities=71% Similarity=1.127 Sum_probs=348.8
Q ss_pred ccccccccccCCCcEEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccChhhHHhhhccCCC
Q 011898 86 AVEYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGG 165 (475)
Q Consensus 86 ~~~~~~~~~~~~~k~aVLLlNlG~P~s~~dV~~FL~~~l~D~~Vi~lP~~~~~~~~~L~~~Ia~~R~~k~~~~Y~~IGgg 165 (475)
....+++.+.+++|+||||+|||||++++||++||+|||+|++||++|+++|++|.+|+.+|+++|++|++++|++||||
T Consensus 76 ~~~~~~~~~~~~~k~gVLLlNlGgPes~~dV~pFL~nlfsD~~II~lP~~~~~~~~~La~~Ia~~R~~ks~~~Y~~IGGg 155 (485)
T PLN02449 76 DEAVADHPKVSEEKVGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQKPLAQFISNLRAPKSKEGYASIGGG 155 (485)
T ss_pred cccccccccccCCceEEEEEeCCCCCChhHHHHHHHHhcCCCCeeeCchhhhHHHHHHHHHHhccCcHHHHHHHHHCCCC
Confidence 45556677778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHH
Q 011898 166 SPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRE 245 (475)
Q Consensus 166 SPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~ 245 (475)
|||+.+|++|+++|++.|++.+.+++|++|||||+|+|+|++++|+++|+++||+||||||||.+||||+++.+.+++++
T Consensus 156 SPL~~iT~~Qa~~Lq~~L~~~~~~~~V~~aMRY~~P~iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~~~~~~ 235 (485)
T PLN02449 156 SPLRKITDEQAEALAKALEAKNLPAKVYVGMRYWHPFTEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLESIFRE 235 (485)
T ss_pred CchHHHHHHHHHHHHHHHhccCCCeEEEEhhhcCCCCHHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHHHHHhh
Confidence 99999999999999999988778899999999999999999999999999999999999999999999999999998877
Q ss_pred hccCCCCCEEEeccCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhc
Q 011898 246 DAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKD 325 (475)
Q Consensus 246 ~~~~~~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~ 325 (475)
......+++++|++||+||+||+|++++|+++|++++++++++|||||||+|+++++++||||++||++|+++|+++|..
T Consensus 236 ~~~~~~~~~~~I~~~~~~p~yI~A~a~~I~~~l~~~~~~~~~~LlFSAHGlP~~~v~~~GDpY~~q~~~ta~lI~~~L~~ 315 (485)
T PLN02449 236 DEYLVNMQHTVIPSWYQREGYVKAMADLIKKELAKFSDPEEVHIFFSAHGVPVSYVEEAGDPYKAQMEECVDLIMEELKA 315 (485)
T ss_pred cccccCCeeEEeccccCChHHHHHHHHHHHHHHHhccCcCCcEEEEecCCChhhhhhhcCCChHHHHHHHHHHHHHHhCC
Confidence 54434568999999999999999999999999998766677899999999999999667999999999999999999943
Q ss_pred cCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCC
Q 011898 326 RGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPAL 405 (475)
Q Consensus 326 ~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~L 405 (475)
++..++|+++||||+||.+||+|+|+|+|++|+++|+|+|+||||||++||+|||||||+||+|+|+++|+++|.|+|||
T Consensus 316 ~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiDiE~re~a~e~G~~~~~rVP~L 395 (485)
T PLN02449 316 RGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPISFVSEHIETLEEIDMEYRELALESGIENWGRVPAL 395 (485)
T ss_pred CCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCcccccchHHHHHHHHHHHHHHHHcCCceEEEcCCC
Confidence 33236899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCc--cccCCCCCCCCCCCCChhHHHHHHHH------------------HHHHHHHHHhChh
Q 011898 406 NCTPSFITDLADAVIEALPSA--LAMSAPKNISQEDDHNPVRYAIKMFF------------------GSILAFVLFFSPR 465 (475)
Q Consensus 406 Ndsp~fI~aLadlV~e~l~~~--~~~~~~~~~~c~~c~~~~~~~~k~~~------------------~~~~~~~~~~~~~ 465 (475)
|+||.||++||++|.+++.+. ..++....-.|..|........+++. ..+|+|+.||+++
T Consensus 396 N~~p~FI~~La~lV~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (485)
T PLN02449 396 GCEPTFISDLADAVIEALPYVGAMAVSNLEARQSLVPLGSVEELLATYDSQRRELPPVAVWEWGWTKAAMLAVLLLLVLE 475 (485)
T ss_pred CCCHHHHHHHHHHHHHHhhcccccccccCCCcccchhhcchHHHHhhhhhccccCCCchhhhhcccchHHHHHHHHHHHH
Confidence 999999999999999998852 22332222345544444444445443 6799999999999
Q ss_pred HHHHHhhc
Q 011898 466 MINAFRNQ 473 (475)
Q Consensus 466 ~~~~~~~~ 473 (475)
+++.+.+.
T Consensus 476 ~~~~~~~~ 483 (485)
T PLN02449 476 VTSGFGNL 483 (485)
T ss_pred HHcCCCcC
Confidence 99887653
No 3
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=100.00 E-value=9.5e-95 Score=729.06 Aligned_cols=317 Identities=47% Similarity=0.806 Sum_probs=302.1
Q ss_pred CCCcEEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHH
Q 011898 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (475)
Q Consensus 96 ~~~k~aVLLlNlG~P~s~~dV~~FL~~~l~D~~Vi~lP~~~~~~~~~L~~~Ia~~R~~k~~~~Y~~IGggSPL~~~T~~q 175 (475)
+.+|+||||||||||++++||++||+|||+||+|+++|+++|+ +|+++|++.|++|++++|+.|||+|||+.+|++|
T Consensus 2 ~~~k~avLL~nlG~P~~~e~v~~yL~~~~~d~~v~~~~~~~~~---~l~~~I~~~R~~~~~~~Y~~igg~sPL~~~T~~q 78 (320)
T COG0276 2 KMKKTAVLLLNLGGPETLEDVRPYLKNFLSDRRVIELPRPLWY---PLAGIILPLRLKKVAKNYESIGGKSPLNVITRAQ 78 (320)
T ss_pred CCCceEEEEEecCCCCChHHHHHHHHHHhcCCCCCCCchhhhh---hhhhhhhhhccHHHHHHHHHhcCCCccHHHHHHH
Confidence 4578999999999999999999999999999999999987654 4999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHHhccCCCCCEE
Q 011898 176 AQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVS 255 (475)
Q Consensus 176 a~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~ 255 (475)
+++|+++|+ .++++|++|||||+|+++|++++|+++|+++||++|||||||++|||++.+.+.+++++.+ ..++++
T Consensus 79 ~~~L~~~L~--~~~~~V~~amry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~--~~~~i~ 154 (320)
T COG0276 79 AAALEERLD--LPDFKVYLAMRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELR--GQPKIS 154 (320)
T ss_pred HHHHHHHhC--CCCccEEEeecCCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcC--CCCceE
Confidence 999999998 4589999999999999999999999999999999999999999999999999999998765 346899
Q ss_pred EeccCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCC-CCCeEE
Q 011898 256 IIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGI-NNDHTL 334 (475)
Q Consensus 256 ~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~-~~~~~l 334 (475)
+|++||+||.||+||+++|++.+++++ .++.+|||||||+|+++++. ||||+.||++|+++|+++| |+ .++|.+
T Consensus 155 ~I~~~~~~p~yI~a~a~~I~~~~~~~~-~~~~~llfSaHglP~~~~~~-GDpY~~q~~~t~~li~e~l---g~~~~~~~~ 229 (320)
T COG0276 155 TIPDYYDEPLYIEALADSIREKLAKHP-RDDDVLLFSAHGLPKRYIDE-GDPYPQQCQETTRLIAEAL---GLPEEEYDL 229 (320)
T ss_pred EecCccCChHHHHHHHHHHHHHHHhcC-CCCeEEEEecCCCchhhhhc-CCchHHHHHHHHHHHHHHc---CCCchheeE
Confidence 999999999999999999999999987 56789999999999999964 9999999999999999999 76 368999
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHH
Q 011898 335 AYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITD 414 (475)
Q Consensus 335 afQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp~fI~a 414 (475)
+||||+||++||+|+|+|++++|.++|+|+++|+||||++||+|||+|||+|+++++++.|+.+|.|+|||||||.||++
T Consensus 230 ~~QS~~G~~~WL~P~t~~~l~~L~~~g~k~iiv~pigFvsDhlETL~Eid~e~~e~~~~~Gg~~y~rip~lN~~p~fi~~ 309 (320)
T COG0276 230 TFQSRFGPEPWLQPYTDDLLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGKKYVRIPCLNDSPEFIDA 309 (320)
T ss_pred EeecCCCCCCCCCCCHHHHHHHHHhcCCCeEEEECCchhhhhHHHHHHHHHHHHHHHHHhCCccEEecCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC
Q 011898 415 LADAVIEALP 424 (475)
Q Consensus 415 LadlV~e~l~ 424 (475)
|+++|.+++.
T Consensus 310 la~lv~~~~~ 319 (320)
T COG0276 310 LADLVRELLN 319 (320)
T ss_pred HHHHHHHHhc
Confidence 9999998765
No 4
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=100.00 E-value=3.1e-93 Score=723.87 Aligned_cols=316 Identities=46% Similarity=0.761 Sum_probs=277.1
Q ss_pred cEEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHHHHH
Q 011898 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQA 178 (475)
Q Consensus 99 k~aVLLlNlG~P~s~~dV~~FL~~~l~D~~Vi~lP~~~~~~~~~L~~~Ia~~R~~k~~~~Y~~IGggSPL~~~T~~qa~~ 178 (475)
|+||||+|||||++++||++||++||+|++||++| ++| |++|+++|+++|++|++++|++|||+|||+.+|++|+++
T Consensus 1 K~aVLL~n~G~P~s~~~v~~yL~~~l~d~~vi~lp-~~~--~~~L~~~I~~~R~~~~~~~Y~~ig~~SPL~~~t~~qa~~ 77 (316)
T PF00762_consen 1 KTAVLLVNLGTPESPEDVRPYLREFLSDRRVIDLP-WLW--QPILAGIILPFRPKKSAERYQKIGGGSPLNEITRRQAEA 77 (316)
T ss_dssp EEEEEEEE----SSGGGHHHHHHHHTTTTTTSHST-TTT--HHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHhCCCCCCCCC-chh--HHHHHHHhhhhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Confidence 78999999999999999999999999999999999 664 468999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHHhccCCCCCEEEec
Q 011898 179 LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIR 258 (475)
Q Consensus 179 L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~ 258 (475)
|++.|++.+.+++|++|||||+|+|++++++|+++|+++|+++|||||||.+||||+++.+.+++++.. +.+++++|+
T Consensus 78 l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~--~~~~~~~i~ 155 (316)
T PF00762_consen 78 LQQRLDERGVDVEVYYAMRYGPPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDEVERALKKSR--PNPKVRFIP 155 (316)
T ss_dssp HHHHHHHH-EEEEEEEEESSSSSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHHHHHHHHHTH--SSSEEEEE-
T ss_pred HHHHHHhcCCCeeEEEEeccCCCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHHHHHHHHhcC--CCCeEEEeC
Confidence 999999887889999999999999999999999999999999999999999999999999999998743 346799999
Q ss_pred cCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeC
Q 011898 259 SWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQS 338 (475)
Q Consensus 259 ~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQS 338 (475)
+|++||.||+|++++|++++++++.++.++|||||||+|+++++++||||.+||++|+++|+++| |+. +|.++|||
T Consensus 156 ~~~~~p~yi~a~~~~i~~~l~~~~~~~~~~llfSaHglP~~~~~~~GdpY~~~~~~t~~~i~~~l---~~~-~~~~~fQS 231 (316)
T PF00762_consen 156 SFYDHPAYIEALAERIREALERFPRGEPDHLLFSAHGLPQRYVEDKGDPYPAQCEETARLIAERL---GLP-EWRLAFQS 231 (316)
T ss_dssp --TT-HHHHHHHHHHHHHHHTTS-HCCCEEEEEEEE--BHHHHTCCT-SHHHHHHHHHHHHHHHT---TTS-SEEEEEES
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEccCCCCccccccCCCChHHHHHHHHHHHHHHc---CCC-ceEEEEEC
Confidence 99999999999999999999987533457999999999999995579999999999999999999 775 49999999
Q ss_pred CCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHH
Q 011898 339 RVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADA 418 (475)
Q Consensus 339 r~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp~fI~aLadl 418 (475)
++||.+||+|+|+|+|++|+++|+|+|+|+||||++||+|||||||+|++++|+++|+++|.|+|||||||.||++|+++
T Consensus 232 ~~g~~~WL~P~~~~~l~~l~~~G~~~V~v~p~gFv~D~lETl~eidie~re~~~~~G~~~~~~ip~lN~~~~fi~~La~~ 311 (316)
T PF00762_consen 232 RFGPGEWLGPSTEDVLEELAKEGVKRVVVVPPGFVSDCLETLYEIDIEYRELAEEAGGEEFVRIPCLNDSPEFIEALADL 311 (316)
T ss_dssp -SSSS-BSSSBHHHHHHHHHHCT-SEEEEEETT-SSSSHHHHCCCCCHHHHHHHHHTCCEEEE---STT-HHHHHHHHHH
T ss_pred CCCCCCCccccHHHHHHHHHhcCCCeEEEECCccccccHhHHHHHHHHHHHHHHHcCCceEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc
Q 011898 419 VIEAL 423 (475)
Q Consensus 419 V~e~l 423 (475)
|.++|
T Consensus 312 v~~~~ 316 (316)
T PF00762_consen 312 VREHL 316 (316)
T ss_dssp HHHHH
T ss_pred HHhCc
Confidence 99875
No 5
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=100.00 E-value=2.9e-90 Score=703.92 Aligned_cols=320 Identities=48% Similarity=0.846 Sum_probs=299.9
Q ss_pred CCCcEEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHH
Q 011898 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (475)
Q Consensus 96 ~~~k~aVLLlNlG~P~s~~dV~~FL~~~l~D~~Vi~lP~~~~~~~~~L~~~Ia~~R~~k~~~~Y~~IGggSPL~~~T~~q 175 (475)
+++|+||||+|||||+|++||++||+|||+|++||++|+++| +++++.+|+++|++|++++|++|||+|||+.+|++|
T Consensus 2 ~~~k~~VlL~n~G~P~~~~~v~~yL~~~~~D~~vi~~p~~~~--~~~l~~~I~~~R~~k~~~~Y~~igg~SPl~~~t~~q 79 (322)
T TIGR00109 2 KRKKTGVLLMNLGGPDKLEEVERFLKQLFADPRIIDISRAKW--RKPLAKMILPLRSPKIAKNYEAIGGGSPLLQITEQQ 79 (322)
T ss_pred CCCceEEEEEeCCCCCCHHHHHHHHHHHcCCcchhcCCcccc--ccchHHHHHhhccHHHHHHHHHhCCCCcHHHHHHHH
Confidence 456789999999999999999999999999999999997654 467999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHHhccCCCCCEE
Q 011898 176 AQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVS 255 (475)
Q Consensus 176 a~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~ 255 (475)
+++|++.|++. .+++|++|||||+|+|++++++|+++|+++|++||||||||.+||||+++.+.+++++.... .++++
T Consensus 80 ~~~l~~~l~~~-~~~~V~~amry~~P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~~~~~l~~~~~~-~~~~~ 157 (322)
T TIGR00109 80 AHALEKRLPNE-IDFKVYIAMRYGEPFTEEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNELAEALKKLRSL-RPTIS 157 (322)
T ss_pred HHHHHHHhccC-CCceEEEeeccCCCCHHHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHHHHHHHHhcccC-CCeEE
Confidence 99999999754 57999999999999999999999999999999999999999999999999999998875432 14799
Q ss_pred EeccCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEE
Q 011898 256 IIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLA 335 (475)
Q Consensus 256 ~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~la 335 (475)
+|++|++||.||+|++++|+++|++++.+++++|||||||+|+++++ +||||++||.+|+++|++++ |...+|.++
T Consensus 158 ~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfSaHglP~~~~~-~Gd~Y~~~~~~ta~~l~~~l---~~~~~~~~~ 233 (322)
T TIGR00109 158 VIESWYDNPKYIKALADSIKETLASFPEPDNAVLLFSAHGLPQSYVD-EGDPYPAECEATTRLIAEKL---GFPNEYRLT 233 (322)
T ss_pred EeCccccCcHHHHHHHHHHHHHHHhcCCcCCcEEEEeCCCCchhHhh-CCCChHHHHHHHHHHHHHHc---CCCCCeEEE
Confidence 99999999999999999999999887555667899999999999995 69999999999999999999 643589999
Q ss_pred EeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHH
Q 011898 336 YQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDL 415 (475)
Q Consensus 336 fQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp~fI~aL 415 (475)
|||++||.+||+|+|+++|++|+++|+|+|+|+||||++||+|||||||+|+++.|++.|+++|.|+|||||||.||++|
T Consensus 234 fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP~gFv~D~lETl~ei~~e~~~~~~~~G~~~~~~vp~lN~~p~fi~~l 313 (322)
T TIGR00109 234 WQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPIGFTADHLETLYEIDEEYREVAEDAGGDKYQRCPALNAKPEFIEAM 313 (322)
T ss_pred EeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEECCcccccchhHHHhhhHHHHHHHHHcCCCeEEECCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHc
Q 011898 416 ADAVIEAL 423 (475)
Q Consensus 416 adlV~e~l 423 (475)
+++|.+++
T Consensus 314 ~~~v~~~~ 321 (322)
T TIGR00109 314 ATLVKKKL 321 (322)
T ss_pred HHHHHHhh
Confidence 99999875
No 6
>PRK12435 ferrochelatase; Provisional
Probab=100.00 E-value=8.3e-86 Score=667.92 Aligned_cols=302 Identities=32% Similarity=0.538 Sum_probs=274.0
Q ss_pred CCCcEEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHH
Q 011898 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (475)
Q Consensus 96 ~~~k~aVLLlNlG~P~s~~dV~~FL~~~l~D~~Vi~lP~~~~~~~~~L~~~Ia~~R~~k~~~~Y~~IGggSPL~~~T~~q 175 (475)
+++|+||||||||||++++||++||+|++.|+. |. +..|+ +++++|++|||+|||+.+|++|
T Consensus 1 ~~~~~avlll~~GgP~~~~~V~pfL~ni~~g~~----~~-----~~~l~---------~~~~~Y~~iGG~SPL~~~T~~q 62 (311)
T PRK12435 1 MKKKIGLLVMAYGTPYKEEDIERYYTHIRHGRK----PS-----EEMLQ---------DLKDRYEAIGGISPLAKITDEQ 62 (311)
T ss_pred CCCcEEEEEEeCCCCCCHHHHHHHHHHhcCCCC----CC-----HHHHH---------HHHHHHHHhCCcChHHHHHHHH
Confidence 456799999999999999999999999999972 21 12232 2469999999999999999999
Q ss_pred HHHHHHHHHhc--CCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHHhccCCCCC
Q 011898 176 AQALKTALEAK--NLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLP 253 (475)
Q Consensus 176 a~~L~~~L~~~--~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~ 253 (475)
+++|+++|++. +.+++|++|||||+|+++|++++|+++|+++|++||||||||++||||+.+.+.++.++. +.++
T Consensus 63 a~~L~~~L~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt~s~~~~~~~~~~~~---~~~~ 139 (311)
T PRK12435 63 AKALEKALNEVQDEVEFKLYLGLKHIEPFIEDAVEQMHNDGIEEAISIVLAPHYSTFSVKSYNKRAKEEAEKL---GGPT 139 (311)
T ss_pred HHHHHHHHhhccCCCCceEEEEecCCCCCHHHHHHHHHHcCCCeEEEEECCCccccccHHHHHHHHHHHhccc---CCCe
Confidence 99999999875 357999999999999999999999999999999999999999999999988777655442 3467
Q ss_pred EEEeccCCCChHHHHHHHHHHHHHHhhcCC--CCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCC
Q 011898 254 VSIIRSWYQREGYVNSMADLIQKELGKFQK--PEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINND 331 (475)
Q Consensus 254 v~~I~~~~~~p~yI~ala~~I~~~l~~~~~--~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~ 331 (475)
+++|++|++||.||+|++++|+++|++++. +++++|||||||||+++++ +||||++||++|+++|+++| |+. +
T Consensus 140 ~~~i~~~~~~p~yi~a~a~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~-~GDpY~~q~~~t~~~v~~~l---~~~-~ 214 (311)
T PRK12435 140 ITSIESWYDEPKFIQYWADQIKETFAQIPEEEREKAVLIVSAHSLPEKIIA-AGDPYPDQLEETADLIAEQA---NVE-H 214 (311)
T ss_pred EEEeCCccCChHHHHHHHHHHHHHHHHcCcccccceEEEEecCCCchhHhh-CCCCHHHHHHHHHHHHHHHc---CCC-C
Confidence 999999999999999999999999988743 3567999999999999995 69999999999999999999 774 6
Q ss_pred eEEEEeCCC-CCCCCCCCCHHHHHHHhhhc-CCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCH
Q 011898 332 HTLAYQSRV-GPVKWLKPYTDEVLVELGQK-GVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTP 409 (475)
Q Consensus 332 ~~lafQSr~-Gp~~WL~P~t~d~L~~L~~~-G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp 409 (475)
|.++||||+ ||.+||+|+|+|+|++|+++ |+|+|+|+||||++||+|||||||+|++++|+++|++ |.|+||||+||
T Consensus 215 ~~l~yQSr~~g~~~WL~P~t~d~l~~l~~~~G~k~v~vvpigFvsDhlETl~Eldie~~e~a~~~G~~-~~r~~~lN~~p 293 (311)
T PRK12435 215 YAIGWQSEGNTPDPWLGPDVQDLTRDLYEEHGYKSFIYTPVGFVAEHLEVLYDNDYECKVVTDEIGAK-YYRPEMPNADP 293 (311)
T ss_pred CeEeeecCCCCCCCCCCCCHHHHHHHHHHhcCCceEEEECCchhhhhHHHHHHHHHHHHHHHHHcCCc-EEeccCCCCCH
Confidence 999999997 79999999999999999988 9999999999999999999999999999999999995 99999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 011898 410 SFITDLADAVIEALP 424 (475)
Q Consensus 410 ~fI~aLadlV~e~l~ 424 (475)
.||++|+++|.++++
T Consensus 294 ~fi~~La~lv~~~~~ 308 (311)
T PRK12435 294 LFIDALADVVLKKLK 308 (311)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999764
No 7
>PRK00035 hemH ferrochelatase; Reviewed
Probab=100.00 E-value=6.8e-83 Score=651.17 Aligned_cols=322 Identities=48% Similarity=0.794 Sum_probs=303.6
Q ss_pred CCcEEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHHH
Q 011898 97 EDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQA 176 (475)
Q Consensus 97 ~~k~aVLLlNlG~P~s~~dV~~FL~~~l~D~~Vi~lP~~~~~~~~~L~~~Ia~~R~~k~~~~Y~~IGggSPL~~~T~~qa 176 (475)
++|+||||+|||||++++||++||+|||+|++|+++|+++|+ ++|+++|+++|++|++++|+.|||||||+.+|++|+
T Consensus 3 ~~k~~vll~n~G~P~~~~~v~~fl~~~~~d~~v~~~~~~~~~--~~l~~~i~~~r~~~~~~~Y~~ig~gSPl~~~t~~q~ 80 (333)
T PRK00035 3 MPKDAVLLLNLGGPETPEDVRPFLKNFLSDRRVIDLPRPLWQ--PLLAGIILPERLPKVAKHYASIGGGSPLNVITRRQA 80 (333)
T ss_pred CCceEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHHHH--HHHHHHhhhhhHHHHHHHHHHcCCCChhHHHHHHHH
Confidence 478999999999999999999999999999999999998865 679999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHHhccCCCCCEEE
Q 011898 177 QALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSI 256 (475)
Q Consensus 177 ~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~~ 256 (475)
++|++.|++.+.++.|++|||||+|+++|++++|+++|+++|+++|||||||.+|+|++.+++.+++++... .+++++
T Consensus 81 ~~L~~~l~~~~~~~~V~~am~y~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~i~~~~~~~~~--~~~i~~ 158 (333)
T PRK00035 81 EALQAELAARGPDLPVYLGMRYWNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFEDLARALAKLRL--QPEIRF 158 (333)
T ss_pred HHHHHHHhccCCCceEEEeecCCCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHHHHHHHHhcCC--CCcEEE
Confidence 999999987777899999999999999999999999999999999999999999999999999998877542 468999
Q ss_pred eccCCCChHHHHHHHHHHHHHHhhcCCC-CceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCC-CCCeEE
Q 011898 257 IRSWYQREGYVNSMADLIQKELGKFQKP-EEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGI-NNDHTL 334 (475)
Q Consensus 257 I~~~~~~p~yI~ala~~I~~~l~~~~~~-~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~-~~~~~l 334 (475)
+++|++||.||++++++|++++++.+.+ ++++|||||||+|.++++ +||||..+|.+|+++|++++ |+ ..+|.+
T Consensus 159 i~~~~~~p~~i~~l~~~I~~~~~~~~~~~~~~~llfs~HG~P~~~~~-~gd~Y~~~~~~t~~~l~~~l---~~~~~~~~~ 234 (333)
T PRK00035 159 IRSYYDHPGYIEALAESIREALAKHGEDPEPDRLLFSAHGLPQRYID-KGDPYQQQCEETARLLAEAL---GLPDEDYDL 234 (333)
T ss_pred eCCccCCHHHHHHHHHHHHHHHHhcCcccCCcEEEEecCCCchHHhh-cCCChHHHHHHHHHHHHHHh---CCCCCCeEE
Confidence 9999999999999999999999876443 467899999999999984 79999999999999999999 75 357999
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHH
Q 011898 335 AYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITD 414 (475)
Q Consensus 335 afQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp~fI~a 414 (475)
+|||++|+.+||+|+++++|++|+++|+|+|+|+|++|++||+|||+|||+|+++.+++.|+++|.|+||||+||.|+++
T Consensus 235 ~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v~P~~Fv~D~lEtl~ei~~e~~~~~~~~G~~~~~~~~~ln~~~~~i~~ 314 (333)
T PRK00035 235 TYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVVVPPGFVSDHLETLEEIDIEYREIAEEAGGEEFRRIPCLNDSPEFIEA 314 (333)
T ss_pred EeeCCCCCCccCCCCHHHHHHHHHHcCCCeEEEECCeeeccchhHHHHHHHHHHHHHHHcCCceEEECCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHcCCc
Q 011898 415 LADAVIEALPSA 426 (475)
Q Consensus 415 LadlV~e~l~~~ 426 (475)
|+++|.+++.+.
T Consensus 315 l~~~v~~~~~~~ 326 (333)
T PRK00035 315 LADLVRENLQGW 326 (333)
T ss_pred HHHHHHHHhcCC
Confidence 999999988664
No 8
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=100.00 E-value=8.4e-44 Score=328.75 Aligned_cols=159 Identities=46% Similarity=0.761 Sum_probs=149.8
Q ss_pred EEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHHHHHH
Q 011898 100 VGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQAL 179 (475)
Q Consensus 100 ~aVLLlNlG~P~s~~dV~~FL~~~l~D~~Vi~lP~~~~~~~~~L~~~Ia~~R~~k~~~~Y~~IGggSPL~~~T~~qa~~L 179 (475)
+||||+|||||++++||++||.+||+|++||++|.++ |++|+++|+++|++|++++|++|||||||+.+|++|+++|
T Consensus 1 ~~VLL~n~G~P~~~~~v~~yL~~~~~d~~vi~~p~~~---~~~l~~~I~~~r~~k~~~~Y~~ig~~SPL~~~t~~q~~~l 77 (159)
T cd03411 1 TAVLLVNLGGPESLEDVRPFLKNFLSDRRVIELPRPL---RPILAGIILPRRPPKVAKNYKKIGGGSPLNEITRAQAEAL 77 (159)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHH---HHHHHHHhcccccHHHHHHHHHcCCCCccHHHHHHHHHHH
Confidence 5999999999999999999999999999999999765 6789999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHHhccCCCCCEEEecc
Q 011898 180 KTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRS 259 (475)
Q Consensus 180 ~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~ 259 (475)
++.|++.+.++.|++|||||+|+++|++++|+++|+++|+++|||||||++||||+++.+.+++++... ..++++|++
T Consensus 78 ~~~L~~~~~~~~v~~amry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~~~~~~~~~~~~~--~~~~~~i~~ 155 (159)
T cd03411 78 EKALDERGIDVKVYLAMRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDEVERALKKLRP--APELRVIRS 155 (159)
T ss_pred HHHHhccCCCcEEEehHhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHHHHHHHHHHhcCC--CCcEEEeCc
Confidence 999987766799999999999999999999999999999999999999999999999999999887543 357999999
Q ss_pred CCCC
Q 011898 260 WYQR 263 (475)
Q Consensus 260 ~~~~ 263 (475)
|++|
T Consensus 156 ~~~~ 159 (159)
T cd03411 156 FYDH 159 (159)
T ss_pred cccC
Confidence 9986
No 9
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=100.00 E-value=1.9e-39 Score=292.73 Aligned_cols=134 Identities=50% Similarity=0.875 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCC-CCCeEEEEeCCCCCCCCC
Q 011898 268 NSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGI-NNDHTLAYQSRVGPVKWL 346 (475)
Q Consensus 268 ~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~-~~~~~lafQSr~Gp~~WL 346 (475)
++++++|++++++.. ++++.|||||||+|.++++ +||||..||.+|+++|+++| |. ..+|.++|||++||.+||
T Consensus 1 ~a~~~~I~~~~~~~~-~~~~~llfsaHgiP~~~~~-~gd~Y~~~~~~~~~~v~~~l---~~~~~~~~~~fqS~~g~~~Wl 75 (135)
T cd00419 1 EALADHIREALAELP-REKDRLLFSAHGLPVRDIK-KGDPYPDQCEETARLVAERL---GLPFDEYELAYQSRFGPGEWL 75 (135)
T ss_pred ChHHHHHHHHHHhcC-CCCCEEEEEcCCCHHHHhh-CCCCHHHHHHHHHHHHHHHh---CCCCCCEEEEecCCCCCCCCC
Confidence 478999999998874 4557899999999999995 69999999999999999999 63 257999999999999999
Q ss_pred CCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCC
Q 011898 347 KPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALN 406 (475)
Q Consensus 347 ~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LN 406 (475)
+|+|+|+|++|+++|+|+|+|+||||++||+|||||||+|+++.++++|+.+|+|+||||
T Consensus 76 ~P~~~~~l~~l~~~G~~~i~v~p~gF~~D~~Etl~di~~e~~~~~~~~G~~~~~rvp~lN 135 (135)
T cd00419 76 EPSTDDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEYRELAEEAGGENYRRVPCLN 135 (135)
T ss_pred CCCHHHHHHHHHHcCCCeEEEECCccccccHHHHHHHHHHHHHHHHHcCCceEEEcCCCC
Confidence 999999999999999999999999999999999999999999999999988999999998
No 10
>PRK02395 hypothetical protein; Provisional
Probab=99.66 E-value=1.9e-14 Score=144.49 Aligned_cols=234 Identities=13% Similarity=0.095 Sum_probs=168.2
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHH
Q 011898 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 241 (475)
Q Consensus 162 IGggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~ 241 (475)
+|=||+......+..+.+.+.|.+++..-.|.+||--.+|+++++++++. .++|+++|+|..-+.. ..+++.+
T Consensus 7 vgHGSrr~~~~~~~~~~la~~l~~~~~~~~v~~~fle~~P~l~~~l~~l~---~~~ivVvPlfL~~G~H----v~~DIP~ 79 (279)
T PRK02395 7 VGHGSHLNPDSALPTYAHAETIRARGLFDEVREGFWKEEPSLRQVLRTVE---SDEVYVVPLFISEGYF----TEQVIPR 79 (279)
T ss_pred EeCCCCCCcchHHHHHHHHHHHHhcCCCCeEEEeeccCCCCHHHHHHhcC---cCcEEEEeeEeccccc----hhhhhHH
Confidence 36678766677777777888887665555788998669999999999985 5899999999944433 3455666
Q ss_pred HHHHh-----ccCC------CCCEEEeccCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCC-hH
Q 011898 242 IFRED-----AYLS------RLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDP-YR 309 (475)
Q Consensus 242 ~~~~~-----~~~~------~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDp-Y~ 309 (475)
.++.. ...+ ++++.+.++++.||.+++++.+++++++...+.+++..||+.+||.+.. + -.
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~plG~~p~l~~~l~~ri~e~~~~~~~~~~~alvlvgHGS~~~-------~~a~ 152 (279)
T PRK02395 80 ELGLGHDGPVADRGTLRALDGKTVHYTGPVGTHPAMADVIAARARSVTGDPDVGEDTALAVVGHGTERN-------ENSA 152 (279)
T ss_pred HhcCCcCCccccccccccCCCceEEeCCCCCCChHHHHHHHHHHHHhhcCCCCCcCceEEEEecCCCCc-------hhHH
Confidence 55421 1112 5789999999999999999999999887643223556799999998621 1 23
Q ss_pred HHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccccc-cchhhHHHHHHHHH
Q 011898 310 DQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVS-EHIETLEEIDMEYK 388 (475)
Q Consensus 310 ~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvs-DhlETL~EIDiE~r 388 (475)
..+++.++.+.++. ++ ..+.++|-. + .|+++++++++. .++|+|+|+.++. +|. ..||..+..
T Consensus 153 ~~~~~~a~~l~~~~---~~-~~V~~~fle--~-----~P~l~~~l~~l~---~~~V~vvP~fL~~G~H~--~~DIp~~~~ 216 (279)
T PRK02395 153 KAIYYHADRLRERG---RF-AEVEALFLD--E-----EPEVDDWPDLFE---ADDVVVVPLFIADGFHT--QEDIPEDMG 216 (279)
T ss_pred HHHHHHHHHHHhhC---CC-CeEEEEecc--C-----CCCHHHHHHHhC---CCeEEEEeeecccCcch--HhHHHHHHH
Confidence 45566666666553 44 368889975 2 599999998874 4799999998887 555 234444332
Q ss_pred HHHH-----HcC----CceEEEcCCCCCCHHHHHHHHHHHHHHcCC
Q 011898 389 ELAL-----ESG----IENWGRVPALNCTPSFITDLADAVIEALPS 425 (475)
Q Consensus 389 e~a~-----e~G----~~~~~rvp~LNdsp~fI~aLadlV~e~l~~ 425 (475)
.... ... ..++.+.+.|+.||.+++.+++++.+.+..
T Consensus 217 ~~~~~~~g~~~~~~~~~~~i~~~~~LG~~p~l~~i~~~R~~ea~~~ 262 (279)
T PRK02395 217 LTDDYRTGYDVPTAVDGHRIWYAGAVGTEPLMADVILERAADAGAD 262 (279)
T ss_pred HhhccccccCCCcccCCeeEEEecCCCCCHHHHHHHHHHHHHhhcC
Confidence 2211 111 336899999999999999999999997764
No 11
>PLN02757 sirohydrochlorine ferrochelatase
Probab=99.32 E-value=4.6e-11 Score=110.57 Aligned_cols=139 Identities=13% Similarity=0.071 Sum_probs=111.1
Q ss_pred CceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCce
Q 011898 285 EEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKS 364 (475)
Q Consensus 285 ~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~ 364 (475)
++..||+.+||.+.. ....++++.++.+.++. ++ ..++++|-.. .+|+++++|+++.++|.++
T Consensus 12 ~~~~lllvgHGSrd~-------~a~~~~~~la~~l~~~~---~~-~~V~~aFle~------~~Psl~eal~~l~~~g~~~ 74 (154)
T PLN02757 12 DKDGVVIVDHGSRRK-------ESNLMLEEFVAMYKQKT---GH-PIVEPAHMEL------AEPSIKDAFGRCVEQGASR 74 (154)
T ss_pred CCcEEEEEeCCCCCH-------HHHHHHHHHHHHHHhhC---CC-CcEEEEEEec------CCCCHHHHHHHHHHCCCCE
Confidence 456899999998622 14678888888888765 44 3578899652 3799999999999999999
Q ss_pred EEEEcccccc-cchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCh
Q 011898 365 LLAIPVSFVS-EHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMSAPKNISQEDDHNP 443 (475)
Q Consensus 365 VvVvPigFvs-DhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp~fI~aLadlV~e~l~~~~~~~~~~~~~c~~c~~~ 443 (475)
|+|+|+.++. -|+ ..||..+..+...+++..++.+.++|++||.+++.|.+++.+++..... ..++|++|+-+
T Consensus 75 vvVvP~FL~~G~H~--~~DIp~~v~~~~~~~p~~~i~~~~pLG~~p~l~~ll~~Ri~eal~~~~~----~~~~~~~~~~~ 148 (154)
T PLN02757 75 VIVSPFFLSPGRHW--QEDIPALTAEAAKEHPGVKYLVTAPIGLHELMVDVVNDRIKYCLSHVAG----DADECDVCAGT 148 (154)
T ss_pred EEEEEhhhcCCcch--HhHHHHHHHHHHHHCCCcEEEECCCCCCCHHHHHHHHHHHHHHhhcccC----CCCccceeecc
Confidence 9999997776 454 4677777888877777668999999999999999999999999876432 34789999987
Q ss_pred -hHH
Q 011898 444 -VRY 446 (475)
Q Consensus 444 -~~~ 446 (475)
.|+
T Consensus 149 ~~~~ 152 (154)
T PLN02757 149 GKCR 152 (154)
T ss_pred cccc
Confidence 664
No 12
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=99.31 E-value=1.6e-11 Score=103.86 Aligned_cols=87 Identities=26% Similarity=0.396 Sum_probs=77.6
Q ss_pred EEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEE
Q 011898 289 IFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAI 368 (475)
Q Consensus 289 LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVv 368 (475)
|||++||.|. .++|...+.+.++.|.+++ +. .++.++|++ |++|++++++++|.++|+++|+|+
T Consensus 2 lllv~HGs~~------~s~~~~~~~~~~~~l~~~~---~~-~~v~~a~~~------~~~P~i~~~l~~l~~~g~~~vvvv 65 (101)
T cd03409 2 LLVVGHGSPY------KDPYKKDIEAQAHNLAESL---PD-FPYYVGFQS------GLGPDTEEAIRELAEEGYQRVVIV 65 (101)
T ss_pred EEEEECCCCC------CccHHHHHHHHHHHHHHHC---CC-CCEEEEEEC------CCCCCHHHHHHHHHHcCCCeEEEE
Confidence 7999999983 2589999999999998886 32 478999999 368999999999999999999999
Q ss_pred cccccccchhhHHHHHHHHHHHHH
Q 011898 369 PVSFVSEHIETLEEIDMEYKELAL 392 (475)
Q Consensus 369 PigFvsDhlETL~EIDiE~re~a~ 392 (475)
|+.|+ ++.||.+||..+..+.++
T Consensus 66 Pl~~~-~g~h~~~di~~~~~~~~~ 88 (101)
T cd03409 66 PLAPV-SGDEVFYDIDSEIGLVRK 88 (101)
T ss_pred eCccc-cChhhHHHHHHHHHHHHH
Confidence 99999 999999999999988876
No 13
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=99.25 E-value=7e-11 Score=99.87 Aligned_cols=75 Identities=27% Similarity=0.353 Sum_probs=63.0
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCceEEEeeecc-CCCHHHHHHHHHHCCCCEEEEEecCCcccccChH-HHHHHHHHHH
Q 011898 166 SPLRKITDEQAQALKTALEAKNLPVNVYVGMRYW-YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTG-SSIRVLQNIF 243 (475)
Q Consensus 166 SPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~-~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtg-S~~~~l~~~~ 243 (475)
||.+.+++++++.|++.++ +..|++||+++ .|++++++++|.++|+++|+++|+||+ +..++. ++.+++.+..
T Consensus 13 s~~~~~~~~~~~~l~~~~~----~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~~-~g~h~~~di~~~~~~~~ 87 (101)
T cd03409 13 DPYKKDIEAQAHNLAESLP----DFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPV-SGDEVFYDIDSEIGLVR 87 (101)
T ss_pred ccHHHHHHHHHHHHHHHCC----CCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCccc-cChhhHHHHHHHHHHHH
Confidence 5777888889998887763 56899999999 999999999999999999999999999 555544 7777777766
Q ss_pred HH
Q 011898 244 RE 245 (475)
Q Consensus 244 ~~ 245 (475)
++
T Consensus 88 ~~ 89 (101)
T cd03409 88 KQ 89 (101)
T ss_pred Hh
Confidence 54
No 14
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=99.20 E-value=1.3e-09 Score=108.09 Aligned_cols=232 Identities=16% Similarity=0.151 Sum_probs=155.4
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCCceEEEee-eccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHH
Q 011898 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 240 (475)
Q Consensus 162 IGggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am-rY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~ 240 (475)
+|-||++..+.+ ..+++.+.+.+++....|..|| .+.+|.++++++.+..+|+++|+++|+|......|+-.+.+++.
T Consensus 8 vgHGsr~p~~~~-~~~~~a~~~~~~~~~~~v~~~f~e~~~P~l~~~~~al~~~G~~~ivvVPlfl~~g~H~~~DIP~~L~ 86 (245)
T COG2138 8 VGHGSRLPRGRE-VAEAIAARLEERGDFPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLFLAAGYHTKRDIPAELG 86 (245)
T ss_pred eecCCCCccHHH-HHHHHHHHHHhhcCCccchhHHHHhcCCCHHHHHHHHHhcCCCeEEEeehhhccCchhhcccHHHHH
Confidence 366788888754 4455555777777656788887 89999999999999999999999999999777666655444444
Q ss_pred HHHHHhccCCCCCEEEeccCCCChHHHHHHHHHHHHHHhhcCCCCce-EEEEecCCCchhhhhccCCChHHHHHHHHHHH
Q 011898 241 NIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEV-MIFFSAHGVPVSYVEKAGDPYRDQMEECIYLI 319 (475)
Q Consensus 241 ~~~~~~~~~~~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~-~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v 319 (475)
..-. .++. +... +++.||...+.+.+++.+.....+ +++ .+++..||.-... -...+..+++.+
T Consensus 87 ~~~~---~~~~--~~~~-p~G~~~~~~~~~~~r~~~~~~~~~--~~~~~vv~~~~Gs~~~~-------~~~~~~~va~~l 151 (245)
T COG2138 87 LARQ---AHPQ--VDLS-PLGTHPAVLDLLGQRLEDAGADEA--DDAERVVLEPRGSSDPI-------ANAAVYRVARLL 151 (245)
T ss_pred Hhhh---cCCc--cccc-ccCCchHHHHHHHHHHHHhccccc--cccceEEEeccCCCccc-------chhHHHHHHHHH
Confidence 3222 2333 2223 999999999999999988876543 222 2777777753211 123334444444
Q ss_pred HHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceE
Q 011898 320 MQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENW 399 (475)
Q Consensus 320 ~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~ 399 (475)
.+.. +.......+|+. . -+|.+.+...++. .++++|+|+ |+.|-+.|.+.+..+. +....+...+
T Consensus 152 ~~~~---~~~~~~~~~~~~-~-----~~~~l~~~~~~~~---~~~~vv~P~-fL~~G~l~~~~~~~~~--~~~~~~~~~i 216 (245)
T COG2138 152 GEGT---ASWKAVITLFTG-V-----AEPGLAGETARLR---YRRVVVLPY-FLFDGLLTDRIRPEVE--LRLAVPEGEI 216 (245)
T ss_pred Hhcc---CCceeeeeeecc-c-----cCcchhhhhhhcc---cCcEEEEEh-hHhCchhhhhhHHhhh--hhhccCCcce
Confidence 4432 110112333332 2 2588888887776 678999985 5666665655544433 3334444568
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHcC
Q 011898 400 GRVPALNCTPSFITDLADAVIEALP 424 (475)
Q Consensus 400 ~rvp~LNdsp~fI~aLadlV~e~l~ 424 (475)
.+.+.+|.+|...+++.+++.+...
T Consensus 217 ~~~~~lG~~p~l~~~~~~r~~~~~~ 241 (245)
T COG2138 217 ALARPLGTHPRLADAVLDRVREARA 241 (245)
T ss_pred EecCcCCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999988654
No 15
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=99.05 E-value=1.3e-08 Score=101.88 Aligned_cols=214 Identities=20% Similarity=0.258 Sum_probs=125.8
Q ss_pred HHHHHhcCCCceEEEee-----------ec--cCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHHh
Q 011898 180 KTALEAKNLPVNVYVGM-----------RY--WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRED 246 (475)
Q Consensus 180 ~~~L~~~~~~~~V~~am-----------rY--~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~~ 246 (475)
++.+++..++++|+.|| +. .-|+..++|++|.++|+++|+|.||+- .-|.=.+.+.+..++.
T Consensus 24 e~~~~~~fp~~~V~~AfTS~~I~~kl~~~~g~~i~~~~eaL~~L~~~G~~~V~VQplhi-----ipG~Ey~~l~~~v~~~ 98 (262)
T PF06180_consen 24 EKAVREAFPDYDVRRAFTSRIIRKKLAERDGIKIDSPEEALAKLADEGYTEVVVQPLHI-----IPGEEYEKLRATVEAY 98 (262)
T ss_dssp HHHHHHCSTTSEEEEEES-HHHHHHHHHCHT-----HHHHHHHHHHCT--EEEEEE--S-----CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcEEEEchHHHHHHHHHhcCCCCcCCHHHHHHHHHHCCCCEEEEeecce-----eCcHhHHHHHHHHHHh
Confidence 34444444566666665 11 248899999999999999999999965 2344445555555443
Q ss_pred ccCCCCCEEEeccCCC------ChHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHH
Q 011898 247 AYLSRLPVSIIRSWYQ------REGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIM 320 (475)
Q Consensus 247 ~~~~~~~v~~I~~~~~------~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~ 320 (475)
.. +--.+.+.++.-. ++.=++++++.|.+.+... ..+..+||.+||.|... + .-| ..+.
T Consensus 99 ~~-~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~~~~--~~~~a~vlmGHGt~h~a---n-~~Y--------~~l~ 163 (262)
T PF06180_consen 99 KH-DFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEFPKK--RKDEAVVLMGHGTPHPA---N-AAY--------SALQ 163 (262)
T ss_dssp CC-CSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS-TT---TTEEEEEEE---SCHH---H-HHH--------HHHH
T ss_pred hc-cCCeEEecccccccccccCChHHHHHHHHHHHHhcccc--CCCCEEEEEeCCCCCCc---c-HHH--------HHHH
Confidence 21 1125888888876 3666666666665433221 24568999999998531 1 122 2333
Q ss_pred HHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccccc-cchhhHHHHH----HHHHHHHHHcC
Q 011898 321 QRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVS-EHIETLEEID----MEYKELALESG 395 (475)
Q Consensus 321 e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvs-DhlETL~EID----iE~re~a~e~G 395 (475)
..|...|. .++.++--- | .|+++++|++|.+.|+|+|.++|.-+|+ ||. ..|+. .--+...++.|
T Consensus 164 ~~l~~~~~-~~v~vgtvE--G-----~P~~~~vi~~L~~~g~k~V~L~PlMlVAGdHa--~nDmaGde~dSWks~L~~~G 233 (262)
T PF06180_consen 164 AMLKKHGY-PNVFVGTVE--G-----YPSLEDVIARLKKKGIKKVHLIPLMLVAGDHA--KNDMAGDEEDSWKSRLEAAG 233 (262)
T ss_dssp HHHHCCT--TTEEEEETT--S-----SSBHHHHHHHHHHHT-SEEEEEEESSS--HHH--HCCCCSSSTTSHHHHHHHTT
T ss_pred HHHHhCCC-CeEEEEEeC--C-----CCCHHHHHHHHHhcCCCeEEEEecccccchhh--hhhhcCCCcchHHHHHHHCC
Confidence 44433243 244443211 3 4999999999999999999999999999 887 34441 13467778899
Q ss_pred CceEEEcCCCCCCHHHHHHHHHHHHHHc
Q 011898 396 IENWGRVPALNCTPSFITDLADAVIEAL 423 (475)
Q Consensus 396 ~~~~~rvp~LNdsp~fI~aLadlV~e~l 423 (475)
++--....-|+..|.+.+...+-+.+++
T Consensus 234 ~~v~~~l~GLGE~~~i~~ifi~hl~~ai 261 (262)
T PF06180_consen 234 FEVTCVLKGLGEYPAIQQIFIEHLKEAI 261 (262)
T ss_dssp -EEEE----GGGSHHHHHHHHHHHHHHH
T ss_pred CEEEEEeccCcCCHHHHHHHHHHHHHHh
Confidence 9877788889999999988888877654
No 16
>PLN02757 sirohydrochlorine ferrochelatase
Probab=98.86 E-value=8.5e-08 Score=88.86 Aligned_cols=115 Identities=13% Similarity=0.058 Sum_probs=84.6
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCCceEEEee-eccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHH
Q 011898 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 240 (475)
Q Consensus 162 IGggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am-rY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~ 240 (475)
+|=||+-.... +..+.+.+.|.+......|..|| .+++|+++++++++.+.|+++|+++|+|..-+..+ .+++.
T Consensus 19 vgHGSrd~~a~-~~~~~la~~l~~~~~~~~V~~aFle~~~Psl~eal~~l~~~g~~~vvVvP~FL~~G~H~----~~DIp 93 (154)
T PLN02757 19 VDHGSRRKESN-LMLEEFVAMYKQKTGHPIVEPAHMELAEPSIKDAFGRCVEQGASRVIVSPFFLSPGRHW----QEDIP 93 (154)
T ss_pred EeCCCCCHHHH-HHHHHHHHHHHhhCCCCcEEEEEEecCCCCHHHHHHHHHHCCCCEEEEEEhhhcCCcch----HhHHH
Confidence 35677766543 44455555665543333466666 88999999999999999999999999999644444 34455
Q ss_pred HHHHH-hccCCCCCEEEeccCCCChHHHHHHHHHHHHHHhhc
Q 011898 241 NIFRE-DAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKF 281 (475)
Q Consensus 241 ~~~~~-~~~~~~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~ 281 (475)
+.+++ ...+|++++.+.++.+.||.+++++.+++++++...
T Consensus 94 ~~v~~~~~~~p~~~i~~~~pLG~~p~l~~ll~~Ri~eal~~~ 135 (154)
T PLN02757 94 ALTAEAAKEHPGVKYLVTAPIGLHELMVDVVNDRIKYCLSHV 135 (154)
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 44433 223577889999999999999999999999998653
No 17
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=98.84 E-value=2.4e-08 Score=88.64 Aligned_cols=110 Identities=18% Similarity=0.257 Sum_probs=83.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCceEEEe-eeccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHH
Q 011898 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 241 (475)
Q Consensus 163 GggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~a-mrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~ 241 (475)
|=||+... +.+..+.+.+.|.+++....|++| |.|+.|++++++++|.+.|+++|+++|+|..-...+. +++..
T Consensus 8 ~hGS~~~~-~~~~~~~~~~~l~~~~~~~~v~~afle~~~P~l~~~l~~l~~~g~~~v~vvPlfl~~G~h~~----~dip~ 82 (126)
T PRK00923 8 GHGSRLPY-NKEVVTKIAEKIKEKHPFYIVEVGFMEFNEPTIPEALKKLIGTGADKIIVVPVFLAHGVHTK----RDIPR 82 (126)
T ss_pred eCCCCChH-HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEchhhccCcccc----cccch
Confidence 55676543 346677778888776667789999 5899999999999999999999999999986544433 34443
Q ss_pred HHH-------H-hccCCCCCEEEeccCCCChHHHHHHHHHHHHH
Q 011898 242 IFR-------E-DAYLSRLPVSIIRSWYQREGYVNSMADLIQKE 277 (475)
Q Consensus 242 ~~~-------~-~~~~~~~~v~~I~~~~~~p~yI~ala~~I~~~ 277 (475)
.+. + ....+++++.+.++.+.||.+++.+.++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~i~~~~~lG~~p~l~~~~~~r~~e~ 126 (126)
T PRK00923 83 ILGLDEGEKEEIEEDGKDVEIVYAEPLGADERIADIVLKRANEA 126 (126)
T ss_pred hhhcccccccchhhcCCCeEEEEcCCCCCCHHHHHHHHHHHhhC
Confidence 332 1 11245678899999999999999999999863
No 18
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=98.82 E-value=1.1e-07 Score=82.88 Aligned_cols=115 Identities=19% Similarity=0.267 Sum_probs=85.6
Q ss_pred EEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEE
Q 011898 288 MIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLA 367 (475)
Q Consensus 288 ~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvV 367 (475)
.+|+.+||.+.. .....+.+.++.+.+++ +. .++..+|-+.. .|+++++|+++.++|.++|+|
T Consensus 2 a~llv~HGS~~~-------~~~~~~~~l~~~l~~~~---~~-~~v~~afle~~------~P~~~~~l~~l~~~g~~~i~v 64 (117)
T cd03414 2 AVVLVGRGSSDP-------DANADVAKIARLLEEGT---GF-ARVETAFAAAT------RPSLPEALERLRALGARRVVV 64 (117)
T ss_pred EEEEEcCCCCCH-------HHHHHHHHHHHHHHHhc---CC-CeEEEEEecCC------CCCHHHHHHHHHHcCCCEEEE
Confidence 578999998521 13456666677776665 32 36788997622 699999999999999999999
Q ss_pred EcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHH
Q 011898 368 IPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEA 422 (475)
Q Consensus 368 vPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp~fI~aLadlV~e~ 422 (475)
+|+.++... .+ .+|..+..+...+ +...+...+.|+.||.+++++.+++.+.
T Consensus 65 vP~fL~~G~-h~-~~i~~~~~~~~~~-~~~~i~~~~pLG~~~~l~~~l~~r~~~~ 116 (117)
T cd03414 65 LPYLLFTGV-LM-DRIEEQVAELAAE-PGIEFVLAPPLGPHPELAEALLERVREA 116 (117)
T ss_pred EechhcCCc-hH-HHHHHHHHHHHhC-CCceEEECCCCCCCHHHHHHHHHHHHhh
Confidence 998776643 23 4565555555444 4557999999999999999999999875
No 19
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=98.78 E-value=1.1e-07 Score=85.24 Aligned_cols=109 Identities=13% Similarity=0.114 Sum_probs=82.0
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCCceEEEee-eccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHH
Q 011898 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 240 (475)
Q Consensus 162 IGggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am-rY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~ 240 (475)
+|=||+...+.+ ..+.+.+.|.+. .+++|+.|| .++.|+++|++++|.++|+++|+++|+|..-. +++.+++.
T Consensus 6 vgHGSR~~~~~~-~~~~la~~l~~~-~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvPlFL~~G----~Hv~~DiP 79 (125)
T cd03415 6 ITHGSRRNTFNE-DMEEWAAYLERK-LGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIALAFLGRG----NHVARDIM 79 (125)
T ss_pred EecCCCChHHHH-HHHHHHHHHHhc-cCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEehhhccCC----cchHHHHH
Confidence 366788776654 344555566542 356788886 89999999999999999999999999998544 44555666
Q ss_pred HHHHHh---------ccCCCCCEEEeccCCCChHHHHHHHHHHHH
Q 011898 241 NIFRED---------AYLSRLPVSIIRSWYQREGYVNSMADLIQK 276 (475)
Q Consensus 241 ~~~~~~---------~~~~~~~v~~I~~~~~~p~yI~ala~~I~~ 276 (475)
+.+++. ...+.+.+.+.++.+.||.+.+++++++++
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~i~~~~pLG~~p~l~~~l~~r~~~ 124 (125)
T cd03415 80 GELGVSRFYKWVMSKYGGKEILVYVTEPLADSPLVKLALFYRVKR 124 (125)
T ss_pred HHHHhhcccchhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHHh
Confidence 655541 112456799999999999999999999976
No 20
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=98.74 E-value=1.9e-07 Score=81.44 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=82.1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCceEEEeeec-cCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHH
Q 011898 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRY-WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 241 (475)
Q Consensus 163 GggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY-~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~ 241 (475)
|-||+..... +..+.+.+.|.++.+...|+.||-. +.|.+++++++|.+.|+++|+++|+|..-... + +++.+
T Consensus 7 ~HGS~~~~~~-~~~~~l~~~l~~~~~~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP~fL~~G~h-~----~~i~~ 80 (117)
T cd03414 7 GRGSSDPDAN-ADVAKIARLLEEGTGFARVETAFAAATRPSLPEALERLRALGARRVVVLPYLLFTGVL-M----DRIEE 80 (117)
T ss_pred cCCCCCHHHH-HHHHHHHHHHHHhcCCCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEechhcCCch-H----HHHHH
Confidence 5567654443 4667777778766655789999855 69999999999999999999999998854433 2 33444
Q ss_pred HHHHhccCCCCCEEEeccCCCChHHHHHHHHHHHHH
Q 011898 242 IFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKE 277 (475)
Q Consensus 242 ~~~~~~~~~~~~v~~I~~~~~~p~yI~ala~~I~~~ 277 (475)
.+.+....|...+.+.++.+.||.+++++.++++++
T Consensus 81 ~~~~~~~~~~~~i~~~~pLG~~~~l~~~l~~r~~~~ 116 (117)
T cd03414 81 QVAELAAEPGIEFVLAPPLGPHPELAEALLERVREA 116 (117)
T ss_pred HHHHHHhCCCceEEECCCCCCCHHHHHHHHHHHHhh
Confidence 433321115678999999999999999999999875
No 21
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=98.71 E-value=1.7e-07 Score=83.25 Aligned_cols=116 Identities=13% Similarity=0.164 Sum_probs=82.1
Q ss_pred eEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEE
Q 011898 287 VMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLL 366 (475)
Q Consensus 287 ~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~Vv 366 (475)
..+|+.+||.+.. .....+.+.++.+.++. +. ..+.++|-+ ++ .|++++++++|.++|+++|+
T Consensus 2 ~~lvlv~hGS~~~-------~~~~~~~~~~~~l~~~~---~~-~~v~~afle-~~-----~P~l~~~l~~l~~~g~~~v~ 64 (126)
T PRK00923 2 LGLLLVGHGSRLP-------YNKEVVTKIAEKIKEKH---PF-YIVEVGFME-FN-----EPTIPEALKKLIGTGADKII 64 (126)
T ss_pred cEEEEEeCCCCCh-------HHHHHHHHHHHHHHHhC---CC-CeEEEEEEE-cC-----CCCHHHHHHHHHHcCCCEEE
Confidence 3689999998632 12455566666666653 22 367888855 22 59999999999999999999
Q ss_pred EEcccccc-cchhhHHHHHHHHH-------HHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHH
Q 011898 367 AIPVSFVS-EHIETLEEIDMEYK-------ELALESGIENWGRVPALNCTPSFITDLADAVIE 421 (475)
Q Consensus 367 VvPigFvs-DhlETL~EIDiE~r-------e~a~e~G~~~~~rvp~LNdsp~fI~aLadlV~e 421 (475)
|+|+.++. .|.+ .||..+.. ++..+.....+.+.++|++||.+++.+.+++.+
T Consensus 65 vvPlfl~~G~h~~--~dip~~~~~~~~~~~~~~~~~~~~~i~~~~~lG~~p~l~~~~~~r~~e 125 (126)
T PRK00923 65 VVPVFLAHGVHTK--RDIPRILGLDEGEKEEIEEDGKDVEIVYAEPLGADERIADIVLKRANE 125 (126)
T ss_pred EEchhhccCcccc--cccchhhhcccccccchhhcCCCeEEEEcCCCCCCHHHHHHHHHHHhh
Confidence 99986665 4553 34443332 233333344788999999999999999999876
No 22
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=98.70 E-value=2.8e-07 Score=82.69 Aligned_cols=114 Identities=19% Similarity=0.179 Sum_probs=84.0
Q ss_pred eEEEEecCCCchhhhhccCCCh-HHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceE
Q 011898 287 VMIFFSAHGVPVSYVEKAGDPY-RDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSL 365 (475)
Q Consensus 287 ~~LLFSaHglP~~~v~~~GDpY-~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~V 365 (475)
+.||+.+||.. ||. ...+++.++.+.++. +. ++.+||-. -.+|++.++++++.++|+++|
T Consensus 1 ~~lllvgHGSR--------~~~~~~~~~~la~~l~~~~---~~--~v~~afle------~~~P~l~~~l~~l~~~G~~~i 61 (125)
T cd03415 1 TAIIIITHGSR--------RNTFNEDMEEWAAYLERKL---GV--PVYLTYNE------YAEPNWRDLLNELLSEGYGHI 61 (125)
T ss_pred CEEEEEecCCC--------ChHHHHHHHHHHHHHHhcc---CC--ceEEEEee------cCCCCHHHHHHHHHHCCCCEE
Confidence 36899999985 333 566777777776543 33 57888854 237999999999999999999
Q ss_pred EEEcccccc-cchhhHHHHHHHHHHH-----H-HHc--CCceEEEcCCCCCCHHHHHHHHHHHHH
Q 011898 366 LAIPVSFVS-EHIETLEEIDMEYKEL-----A-LES--GIENWGRVPALNCTPSFITDLADAVIE 421 (475)
Q Consensus 366 vVvPigFvs-DhlETL~EIDiE~re~-----a-~e~--G~~~~~rvp~LNdsp~fI~aLadlV~e 421 (475)
+|+|+.++. -|+ -.||..+..+. . .+. ...++...|.|++||.+++++++++.+
T Consensus 62 vVvPlFL~~G~Hv--~~DiP~~l~~~~~~~~~~~~~~~~~~~i~~~~pLG~~p~l~~~l~~r~~~ 124 (125)
T cd03415 62 IIALAFLGRGNHV--ARDIMGELGVSRFYKWVMSKYGGKEILVYVTEPLADSPLVKLALFYRVKR 124 (125)
T ss_pred EEehhhccCCcch--HHHHHHHHHhhcccchhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999865544 455 56776666542 1 122 123599999999999999999999876
No 23
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=98.52 E-value=1.4e-05 Score=77.40 Aligned_cols=195 Identities=17% Similarity=0.319 Sum_probs=122.7
Q ss_pred eccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHHhc-cCCCCCEEEeccC-CCChHHHHHHHHHH
Q 011898 197 RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDA-YLSRLPVSIIRSW-YQREGYVNSMADLI 274 (475)
Q Consensus 197 rY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~~~-~~~~~~v~~I~~~-~~~p~yI~ala~~I 274 (475)
-+..| ..||.+|++.|++++++-|++-.- |-=.+.+-+...+.. .+. .+.+.++. +-+..|-. +.+.|
T Consensus 58 ~~dTP--~~aL~klk~~gy~eviiQ~lhiIp-----G~EyEklvr~V~~~~~dF~--~lkig~PlLy~k~DYe~-~v~ai 127 (265)
T COG4822 58 DFDTP--IQALNKLKDQGYEEVIIQPLHIIP-----GIEYEKLVREVNKYSNDFK--RLKIGRPLLYYKNDYEI-CVEAI 127 (265)
T ss_pred ccCCH--HHHHHHHHHccchheeeeeeeecC-----chHHHHHHHHHHHHhhhhh--eeecCCceeechhhHHH-HHHHH
Confidence 34445 469999999999999999985421 221222222222110 111 13333322 12233333 23344
Q ss_pred HHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHH
Q 011898 275 QKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVL 354 (475)
Q Consensus 275 ~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L 354 (475)
+..+... .++-.++|..||.-.. ...+.++.+.++..- |+. ++.++--- | -|.++++|
T Consensus 128 k~~~ppl--~k~e~~vlmgHGt~h~---------s~~~YacLd~~~~~~---~f~-~v~v~~ve--~-----yP~~d~vi 185 (265)
T COG4822 128 KDQIPPL--NKDEILVLMGHGTDHH---------SNAAYACLDHVLDEY---GFD-NVFVAAVE--G-----YPLVDTVI 185 (265)
T ss_pred HHhcCCc--CcCeEEEEEecCCCcc---------HHHHHHHHHHHHHhc---CCC-ceEEEEec--C-----CCcHHHHH
Confidence 4433211 2334789999998422 122334555555443 663 55444322 2 39999999
Q ss_pred HHhhhcCCceEEEEcccccc-cchhhHHHHH----HHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHHcCC
Q 011898 355 VELGQKGVKSLLAIPVSFVS-EHIETLEEID----MEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPS 425 (475)
Q Consensus 355 ~~L~~~G~k~VvVvPigFvs-DhlETL~EID----iE~re~a~e~G~~~~~rvp~LNdsp~fI~aLadlV~e~l~~ 425 (475)
+.|.+.|+|.|-++|.-||+ ||- .-|+. ...+..++++|++.=.+..-|+..|+|-....+-+..++..
T Consensus 186 ~~l~~~~~~~v~L~PlMlvAG~Ha--~nDMasddedswk~il~~~G~~v~~~l~GLGE~~~iq~ifi~Hik~aie~ 259 (265)
T COG4822 186 EYLRKNGIKEVHLIPLMLVAGDHA--KNDMASDDEDSWKNILEKNGFKVEVYLHGLGENPAIQAIFIDHIKDAIER 259 (265)
T ss_pred HHHHHcCCceEEEeeeEEeechhh--hhhhcccchHHHHHHHHhCCceeEEEeecCCCcHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999 665 46666 67899999999998889999999999988777776666543
No 24
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=98.47 E-value=2.5e-07 Score=79.08 Aligned_cols=93 Identities=18% Similarity=0.211 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcCCCceEEEee-eccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHH-hccCCCC
Q 011898 175 QAQALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRE-DAYLSRL 252 (475)
Q Consensus 175 qa~~L~~~L~~~~~~~~V~~am-rY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~-~~~~~~~ 252 (475)
..+.+.+.|.++.. ..|.+|| .++.|++++++++|.+.|+++|+++|+|..-+.. ..+++.+.+++ ....+++
T Consensus 11 ~~~~la~~l~~~~~-~~v~~~fle~~~P~l~~~l~~l~~~g~~~ivvvP~fL~~G~h----~~~DIp~~l~~~~~~~~~~ 85 (105)
T PF01903_consen 11 ELEDLADRLRERLP-VPVEVAFLEFAEPSLEEALERLVAQGARRIVVVPYFLFPGYH----VKRDIPEALAEARERHPGI 85 (105)
T ss_dssp HHHHHHHHHHHHTS-SEEEEEESSCCCSCCHHCCHHHHCCTCSEEEEEEESSSSSHH----HHCHHHHHHCHHHHCSTTE
T ss_pred HHHHHHHHHHhhcC-CeEEEEEEecCCCCHHHHHHHHHHcCCCeEEEEeeeecCccc----hHhHHHHHHHHHHhhCCce
Confidence 33555556666555 7899998 7999999999999999999999999999954433 33446655544 2235677
Q ss_pred CEEEeccCCCChHHHHHHHH
Q 011898 253 PVSIIRSWYQREGYVNSMAD 272 (475)
Q Consensus 253 ~v~~I~~~~~~p~yI~ala~ 272 (475)
++.+-++.+.||.+.+++++
T Consensus 86 ~v~~~~pLG~~p~l~~~l~e 105 (105)
T PF01903_consen 86 EVRVAPPLGPHPLLAELLAE 105 (105)
T ss_dssp EEEE---GGGSCCHHHHHH-
T ss_pred EEEECCCCCCCHHHHHHHhC
Confidence 89999999999999998864
No 25
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=98.44 E-value=2e-06 Score=88.90 Aligned_cols=114 Identities=12% Similarity=0.187 Sum_probs=85.0
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCCceEEEee-eccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHH
Q 011898 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 240 (475)
Q Consensus 162 IGggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am-rY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~ 240 (475)
+|=||....+.+. .+.|.+.|.++ .+.+|+.|| .+++|++++++++|.+.|+++|+++|+|..-. +++.+++.
T Consensus 12 vgHGSRdp~~~~~-~~~La~~l~~~-~~~~V~~aFLE~~ePsl~eal~~l~~~G~~~IvVvPlFL~~G----~Hv~~DIP 85 (335)
T PRK05782 12 IGHGSRRETFNSD-MEGMANYLKEK-LGVPIYLTYNEFAEPNWRSLLNEIIKEGYRRVIIALAFLGRG----NHVFRDIM 85 (335)
T ss_pred EecCCCChHHHHH-HHHHHHHHHhc-cCCceEEEEeccCCCCHHHHHHHHHHCCCCEEEEecccccCC----cchhhhHH
Confidence 4667877766644 34455556543 245688886 89999999999999999999999999998544 34555666
Q ss_pred HHHHHh-------ccC--CCCCEEEeccCCCChHHHHHHHHHHHHHHhhc
Q 011898 241 NIFRED-------AYL--SRLPVSIIRSWYQREGYVNSMADLIQKELGKF 281 (475)
Q Consensus 241 ~~~~~~-------~~~--~~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~ 281 (475)
+.++.. ..+ +.+++.+.++.+.||.+++++.+++++++...
T Consensus 86 ~~L~~~~~~~~~~~~~~~~~i~i~l~~pLG~~p~l~~ll~~Rv~eal~~~ 135 (335)
T PRK05782 86 GELGVQRLNSWEVSKISGKEVEFYVTEPLSDSPLVGLALYYRLARALDAL 135 (335)
T ss_pred HHHHHhhhcchhhhhcCCCceeEEECCCCCCChHHHHHHHHHHHHHhhcC
Confidence 555421 112 34667999999999999999999999998543
No 26
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=98.38 E-value=5.4e-06 Score=85.76 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=89.9
Q ss_pred eEEEEecCCCchhhhhccCCC-hHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceE
Q 011898 287 VMIFFSAHGVPVSYVEKAGDP-YRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSL 365 (475)
Q Consensus 287 ~~LLFSaHglP~~~v~~~GDp-Y~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~V 365 (475)
..+|+.+||.. || ....+++.++.+.++. +. ++.++|-- -.+|++++.+++|.++|+++|
T Consensus 7 ~aiLLvgHGSR--------dp~~~~~~~~La~~l~~~~---~~--~V~~aFLE------~~ePsl~eal~~l~~~G~~~I 67 (335)
T PRK05782 7 TAIILIGHGSR--------RETFNSDMEGMANYLKEKL---GV--PIYLTYNE------FAEPNWRSLLNEIIKEGYRRV 67 (335)
T ss_pred ceEEEEecCCC--------ChHHHHHHHHHHHHHHhcc---CC--ceEEEEec------cCCCCHHHHHHHHHHCCCCEE
Confidence 47999999984 33 3677777777777654 43 57888854 236999999999999999999
Q ss_pred EEEcccccc-cchhhHHHHHHHHHHH-H-----HHc-CC-ceEEEcCCCCCCHHHHHHHHHHHHHHcCCc
Q 011898 366 LAIPVSFVS-EHIETLEEIDMEYKEL-A-----LES-GI-ENWGRVPALNCTPSFITDLADAVIEALPSA 426 (475)
Q Consensus 366 vVvPigFvs-DhlETL~EIDiE~re~-a-----~e~-G~-~~~~rvp~LNdsp~fI~aLadlV~e~l~~~ 426 (475)
+|+|+.++. -|+ -.||..+..+. + .++ |. .+|++.|.|+.||.+++.|++++.+.+..+
T Consensus 68 vVvPlFL~~G~Hv--~~DIP~~L~~~~~~~~~~~~~~~~~i~i~l~~pLG~~p~l~~ll~~Rv~eal~~~ 135 (335)
T PRK05782 68 IIALAFLGRGNHV--FRDIMGELGVQRLNSWEVSKISGKEVEFYVTEPLSDSPLVGLALYYRLARALDAL 135 (335)
T ss_pred EEecccccCCcch--hhhHHHHHHHhhhcchhhhhcCCCceeEEECCCCCCChHHHHHHHHHHHHHhhcC
Confidence 999987555 466 56776655531 1 222 31 357999999999999999999999988755
No 27
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=98.34 E-value=1.2e-06 Score=74.94 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHH
Q 011898 308 YRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEY 387 (475)
Q Consensus 308 Y~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~ 387 (475)
....++..++.+.+++ + .++..+|-.. .+|++.++++++.++|.++|+|+|+.++.. .-|-.||....
T Consensus 8 ~~~~~~~la~~l~~~~---~--~~v~~~fle~------~~P~l~~~l~~l~~~g~~~ivvvP~fL~~G-~h~~~DIp~~l 75 (105)
T PF01903_consen 8 ANAELEDLADRLRERL---P--VPVEVAFLEF------AEPSLEEALERLVAQGARRIVVVPYFLFPG-YHVKRDIPEAL 75 (105)
T ss_dssp HHHHHHHHHHHHHHHT---S--SEEEEEESSC------CCSCCHHCCHHHHCCTCSEEEEEEESSSSS-HHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHhhc---C--CeEEEEEEec------CCCCHHHHHHHHHHcCCCeEEEEeeeecCc-cchHhHHHHHH
Confidence 3677888888888886 4 4788999542 269999999999999999999999766553 44556687778
Q ss_pred HHHHHHcCCceEEEcCCCCCCHHHHHHHHH
Q 011898 388 KELALESGIENWGRVPALNCTPSFITDLAD 417 (475)
Q Consensus 388 re~a~e~G~~~~~rvp~LNdsp~fI~aLad 417 (475)
.+...+.+..++.+.++|+.||.++++|+|
T Consensus 76 ~~~~~~~~~~~v~~~~pLG~~p~l~~~l~e 105 (105)
T PF01903_consen 76 AEARERHPGIEVRVAPPLGPHPLLAELLAE 105 (105)
T ss_dssp CHHHHCSTTEEEEE---GGGSCCHHHHHH-
T ss_pred HHHHhhCCceEEEECCCCCCCHHHHHHHhC
Confidence 777777776789999999999999998875
No 28
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=98.32 E-value=1.4e-05 Score=71.60 Aligned_cols=119 Identities=15% Similarity=0.219 Sum_probs=87.3
Q ss_pred EEEEecCCCchhhhhccCCCh-HHHHHHHHHHHHHHHhccCCCCCeEEEEeCCC-----CCCCCCCCCHHHHHHHhhhcC
Q 011898 288 MIFFSAHGVPVSYVEKAGDPY-RDQMEECIYLIMQRLKDRGINNDHTLAYQSRV-----GPVKWLKPYTDEVLVELGQKG 361 (475)
Q Consensus 288 ~LLFSaHglP~~~v~~~GDpY-~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~-----Gp~~WL~P~t~d~L~~L~~~G 361 (475)
.||+.+||.- ||. ...+.+.++.++++. + ..++..||-|+. -...+-.|++.++|++|.++|
T Consensus 2 aillv~fGS~--------~~~~~~~~~~i~~~l~~~~---p-~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G 69 (127)
T cd03412 2 AILLVSFGTS--------YPTAEKTIDAIEDKVRAAF---P-DYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADG 69 (127)
T ss_pred eEEEEeCCCC--------CHHHHHHHHHHHHHHHHHC---C-CCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCC
Confidence 5889999973 333 334455555555553 1 237889998843 001144799999999999999
Q ss_pred CceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHH
Q 011898 362 VKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEA 422 (475)
Q Consensus 362 ~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp~fI~aLadlV~e~ 422 (475)
+++|+|+|.-++.. .| ..+|..+..+.. .+..++...+.|..+++-++.+++.+.+.
T Consensus 70 ~~~V~V~Pl~l~~G-~e-~~di~~~v~~~~--~~~~~i~~g~pLl~~~~d~~~v~~al~~~ 126 (127)
T cd03412 70 YTEVIVQSLHIIPG-EE-YEKLKREVDAFK--KGFKKIKLGRPLLYSPEDYEEVAAALKDQ 126 (127)
T ss_pred CCEEEEEeCeeECc-HH-HHHHHHHHHHHh--CCCceEEEccCCCCCHHHHHHHHHHHHhh
Confidence 99999999988887 45 577777666654 56668999999999999998888887654
No 29
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=98.30 E-value=1.1e-05 Score=72.31 Aligned_cols=105 Identities=14% Similarity=0.113 Sum_probs=81.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCceEEEeee------------ccCCCHHHHHHHHHHCCCCEEEEEecCCcccccCh
Q 011898 165 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMR------------YWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTT 232 (475)
Q Consensus 165 gSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amr------------Y~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTt 232 (475)
||--. ..++--+.+.+.+.+..+++.|++||. -..|++.+++++|.++|+++|+|+|++.. .
T Consensus 9 GS~~~-~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~-----~ 82 (127)
T cd03412 9 GTSYP-TAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHII-----P 82 (127)
T ss_pred CCCCH-HHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeE-----C
Confidence 44444 333455667777777778999999985 45899999999999999999999999883 2
Q ss_pred HHHHHHHHHHHHHhccCCCCCEEEeccCCCChHHHHHHHHHHHH
Q 011898 233 GSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276 (475)
Q Consensus 233 gS~~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~yI~ala~~I~~ 276 (475)
|.-.+++.+.+++.. .+..++.+.++...++..++.+++.|.+
T Consensus 83 G~e~~di~~~v~~~~-~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 83 GEEYEKLKREVDAFK-KGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred cHHHHHHHHHHHHHh-CCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 444577777776644 4667899999999999999888877754
No 30
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=98.13 E-value=3.1e-05 Score=65.88 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=71.8
Q ss_pred EEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEE
Q 011898 289 IFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAI 368 (475)
Q Consensus 289 LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVv 368 (475)
+|+.+||.+.. .....+.+.++.+.++. +. ..+..+|-.. ..|+++++++++.++|+++|+|+
T Consensus 2 ivlv~hGS~~~-------~~~~~~~~l~~~l~~~~---~~-~~v~~afle~------~~p~~~~~l~~l~~~g~~~v~vv 64 (101)
T cd03416 2 LLLVGHGSRDP-------RAAEALEALAERLRERL---PG-DEVELAFLEL------AEPSLAEALDELAAQGATRIVVV 64 (101)
T ss_pred EEEEEcCCCCH-------HHHHHHHHHHHHHHhhC---CC-CcEEEEEEEc------CCCCHHHHHHHHHHcCCCEEEEE
Confidence 68899998532 23456666677776664 32 4688888652 26999999999999999999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCC
Q 011898 369 PVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALN 406 (475)
Q Consensus 369 PigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LN 406 (475)
|+.++. -..+-.||..+.+++..+....++++.|.|+
T Consensus 65 Plfl~~-G~h~~~dip~~~~~~~~~~~~~~i~~~~plG 101 (101)
T cd03416 65 PLFLLA-GGHVKEDIPAALAAARARHPGVRIRYAPPLG 101 (101)
T ss_pred eeEeCC-CccccccHHHHHHHHHHHCCCeEEEecCCCC
Confidence 976655 2333467777777766565556798888874
No 31
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=98.07 E-value=4.4e-05 Score=64.90 Aligned_cols=94 Identities=19% Similarity=0.169 Sum_probs=64.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCceEEEee-eccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHH
Q 011898 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 241 (475)
Q Consensus 163 GggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am-rY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~ 241 (475)
+-||+..... +..+.+.+.|.+..+...|+.|| ....|.+++++++|.++|+++|+++|++......+.....+.+.+
T Consensus 6 ~hGS~~~~~~-~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~dip~~~~~ 84 (101)
T cd03416 6 GHGSRDPRAA-EALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLFLLAGGHVKEDIPAALAA 84 (101)
T ss_pred EcCCCCHHHH-HHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeEeCCCccccccHHHHHHH
Confidence 3455554333 45566667776666567888886 677999999999999999999999999997666555444444433
Q ss_pred HHHHhccCCCCCEEEeccC
Q 011898 242 IFREDAYLSRLPVSIIRSW 260 (475)
Q Consensus 242 ~~~~~~~~~~~~v~~I~~~ 260 (475)
.-+ .++++++++.++.
T Consensus 85 ~~~---~~~~~~i~~~~pl 100 (101)
T cd03416 85 ARA---RHPGVRIRYAPPL 100 (101)
T ss_pred HHH---HCCCeEEEecCCC
Confidence 222 2456677776654
No 32
>PRK00035 hemH ferrochelatase; Reviewed
Probab=97.79 E-value=0.00036 Score=71.87 Aligned_cols=104 Identities=20% Similarity=0.206 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccc-cccchhhHHHHHHHHHHH
Q 011898 312 MEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSF-VSEHIETLEEIDMEYKEL 390 (475)
Q Consensus 312 ~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigF-vsDhlETL~EIDiE~re~ 390 (475)
.++.++.|.+.|...+....+..++ +.+ .|+++|+|++|.++|+++|+|+|..- .+-+. | ...-.+..+.
T Consensus 76 t~~q~~~L~~~l~~~~~~~~V~~am--~y~-----~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t-~-gs~~~~i~~~ 146 (333)
T PRK00035 76 TRRQAEALQAELAARGPDLPVYLGM--RYW-----NPSIEEALEALKADGVDRIVVLPLYPQYSYST-T-ASYFEDLARA 146 (333)
T ss_pred HHHHHHHHHHHHhccCCCceEEEee--cCC-----CCCHHHHHHHHHhcCCCEEEEEECCCcccccc-H-HHHHHHHHHH
Confidence 3456677777774323222344444 333 79999999999999999999999863 23221 1 1111123333
Q ss_pred HHHcC-CceEEEcCCCCCCHHHHHHHHHHHHHHcC
Q 011898 391 ALESG-IENWGRVPALNCTPSFITDLADAVIEALP 424 (475)
Q Consensus 391 a~e~G-~~~~~rvp~LNdsp~fI~aLadlV~e~l~ 424 (475)
..+.. ...++.++.+.++|.+++++++.|.+++.
T Consensus 147 ~~~~~~~~~i~~i~~~~~~p~~i~~l~~~I~~~~~ 181 (333)
T PRK00035 147 LAKLRLQPEIRFIRSYYDHPGYIEALAESIREALA 181 (333)
T ss_pred HHhcCCCCcEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence 33433 34799999999999999999999999874
No 33
>PRK12435 ferrochelatase; Provisional
Probab=97.71 E-value=0.00045 Score=71.03 Aligned_cols=142 Identities=15% Similarity=0.229 Sum_probs=88.5
Q ss_pred CChHHHHHHHHHHHHHHHhcc--CCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcc--cccccchhhHH
Q 011898 306 DPYRDQMEECIYLIMQRLKDR--GINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPV--SFVSEHIETLE 381 (475)
Q Consensus 306 DpY~~q~~~t~~~v~e~L~~~--g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPi--gFvsDhlETL~ 381 (475)
.|=....++.+++|.++|... +...++.+++. - | .|+++|+|++|.++|+++|+++|. -|.+=...+..
T Consensus 53 SPL~~~T~~qa~~L~~~L~~~~~~~~~~V~~amr--y----~-~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt~s~~ 125 (311)
T PRK12435 53 SPLAKITDEQAKALEKALNEVQDEVEFKLYLGLK--H----I-EPFIEDAVEQMHNDGIEEAISIVLAPHYSTFSVKSYN 125 (311)
T ss_pred ChHHHHHHHHHHHHHHHHhhccCCCCceEEEEec--C----C-CCCHHHHHHHHHHcCCCeEEEEECCCccccccHHHHH
Confidence 344444456677788887432 11112333332 1 3 799999999999999999999994 23333334443
Q ss_pred HHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHHcCCcccc------------CCCCCCCCCCCCCh-hHHHH
Q 011898 382 EIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAM------------SAPKNISQEDDHNP-VRYAI 448 (475)
Q Consensus 382 EIDiE~re~a~e~G~~~~~rvp~LNdsp~fI~aLadlV~e~l~~~~~~------------~~~~~~~c~~c~~~-~~~~~ 448 (475)
| ..++...+.+...++.+++..+||.||+++++.|.+++...... +......-..+-|+ .|.++
T Consensus 126 ~---~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~a~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~~GDpY~~q~~~t 202 (311)
T PRK12435 126 K---RAKEEAEKLGGPTITSIESWYDEPKFIQYWADQIKETFAQIPEEEREKAVLIVSAHSLPEKIIAAGDPYPDQLEET 202 (311)
T ss_pred H---HHHHHhcccCCCeEEEeCCccCChHHHHHHHHHHHHHHHHcCcccccceEEEEecCCCchhHhhCCCCHHHHHHHH
Confidence 3 23333344454579999999999999999999999888543111 11111112345565 67777
Q ss_pred HHHHHHHHH
Q 011898 449 KMFFGSILA 457 (475)
Q Consensus 449 k~~~~~~~~ 457 (475)
-...++.|.
T Consensus 203 ~~~v~~~l~ 211 (311)
T PRK12435 203 ADLIAEQAN 211 (311)
T ss_pred HHHHHHHcC
Confidence 776666543
No 34
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=97.58 E-value=0.00087 Score=69.13 Aligned_cols=109 Identities=19% Similarity=0.312 Sum_probs=75.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCceEEEee--ecc-----CCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHH
Q 011898 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGM--RYW-----YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI 236 (475)
Q Consensus 164 ggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am--rY~-----~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~ 236 (475)
.|+|-.....+.+++|.+.|+. .-++..+| +.+ .|+++++++++.++|+++|+++|. -|.+-...+..
T Consensus 205 ~Gd~Y~~~~~~ta~~l~~~l~~---~~~~~~~fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP~--gFv~D~lETl~ 279 (322)
T TIGR00109 205 EGDPYPAECEATTRLIAEKLGF---PNEYRLTWQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPI--GFTADHLETLY 279 (322)
T ss_pred CCCChHHHHHHHHHHHHHHcCC---CCCeEEEEeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEECC--cccccchhHHH
Confidence 5788888888888888888851 12344455 444 899999999999999999999997 22222222221
Q ss_pred HHHHHHHHHhccCCCCC-EEEeccCCCChHHHHHHHHHHHHHH
Q 011898 237 RVLQNIFREDAYLSRLP-VSIIRSWYQREGYVNSMADLIQKEL 278 (475)
Q Consensus 237 ~~l~~~~~~~~~~~~~~-v~~I~~~~~~p~yI~ala~~I~~~l 278 (475)
++.-.+++.....+.+ +..++...+||.||++++++|++.+
T Consensus 280 -ei~~e~~~~~~~~G~~~~~~vp~lN~~p~fi~~l~~~v~~~~ 321 (322)
T TIGR00109 280 -EIDEEYREVAEDAGGDKYQRCPALNAKPEFIEAMATLVKKKL 321 (322)
T ss_pred -hhhHHHHHHHHHcCCCeEEECCCCCCCHHHHHHHHHHHHHhh
Confidence 1221111111112345 9999999999999999999998865
No 35
>PRK02395 hypothetical protein; Provisional
Probab=97.49 E-value=0.0011 Score=66.88 Aligned_cols=112 Identities=9% Similarity=-0.007 Sum_probs=78.4
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHH
Q 011898 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNI 242 (475)
Q Consensus 163 GggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~ 242 (475)
|-||+-..++.+...++.+.|.+....-.|++||--..|+++++++++. .++|+++|+|..-...+. +++.+.
T Consensus 142 gHGS~~~~~a~~~~~~~a~~l~~~~~~~~V~~~fle~~P~l~~~l~~l~---~~~V~vvP~fL~~G~H~~----~DIp~~ 214 (279)
T PRK02395 142 GHGTERNENSAKAIYYHADRLRERGRFAEVEALFLDEEPEVDDWPDLFE---ADDVVVVPLFIADGFHTQ----EDIPED 214 (279)
T ss_pred ecCCCCchhHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCHHHHHHHhC---CCeEEEEeeecccCcchH----hHHHHH
Confidence 7778765555555566666665543233688888668999999998874 489999999985443333 334433
Q ss_pred HHHhc------cCC----CCCEEEeccCCCChHHHHHHHHHHHHHHhhc
Q 011898 243 FREDA------YLS----RLPVSIIRSWYQREGYVNSMADLIQKELGKF 281 (475)
Q Consensus 243 ~~~~~------~~~----~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~ 281 (475)
+.... ..| ++.+.+.++.+.||.+.+.+++++++++...
T Consensus 215 ~~~~~~~~~g~~~~~~~~~~~i~~~~~LG~~p~l~~i~~~R~~ea~~~~ 263 (279)
T PRK02395 215 MGLTDDYRTGYDVPTAVDGHRIWYAGAVGTEPLMADVILERAADAGADV 263 (279)
T ss_pred HHHhhccccccCCCcccCCeeEEEecCCCCCHHHHHHHHHHHHHhhcCc
Confidence 22111 223 5578999999999999999999999988654
No 36
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=97.47 E-value=0.00092 Score=57.99 Aligned_cols=88 Identities=20% Similarity=0.406 Sum_probs=60.2
Q ss_pred EEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEE
Q 011898 288 MIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLA 367 (475)
Q Consensus 288 ~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvV 367 (475)
.+||.+||.+.. .....++.++.+.++ +. ..+.++|-- + .|+++++++++.++|+++|++
T Consensus 2 ~illvgHGSr~~--------~~~~~~~l~~~l~~~----~~-~~v~~~~lE--~-----~P~i~~~l~~l~~~G~~~i~l 61 (103)
T cd03413 2 AVVFMGHGTDHP--------SNAVYAALEYVLREE----DP-ANVFVGTVE--G-----YPGLDDVLAKLKKAGIKKVTL 61 (103)
T ss_pred eEEEEECCCCch--------hhhHHHHHHHHHHhc----CC-CcEEEEEEc--C-----CCCHHHHHHHHHHcCCCEEEE
Confidence 478999999743 222333444444333 22 467788854 2 699999999999999999999
Q ss_pred Ecccccc-cchhhHHHHHHH----HHHHHHHcCCc
Q 011898 368 IPVSFVS-EHIETLEEIDME----YKELALESGIE 397 (475)
Q Consensus 368 vPigFvs-DhlETL~EIDiE----~re~a~e~G~~ 397 (475)
+|..++. +|+. .||.-| -+...++.|.+
T Consensus 62 vPl~L~~G~H~~--~Dipge~~~SW~~~l~~~g~~ 94 (103)
T cd03413 62 MPLMLVAGDHAH--NDMAGDEPDSWKSILEAAGIK 94 (103)
T ss_pred Eehhheecccch--hcCCCCCchhHHHHHHHCCCe
Confidence 9997776 8883 555332 45666677764
No 37
>PLN02449 ferrochelatase
Probab=97.46 E-value=0.0013 Score=71.24 Aligned_cols=114 Identities=16% Similarity=0.266 Sum_probs=79.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCceEEEee--ecc-----CCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHH
Q 011898 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGM--RYW-----YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI 236 (475)
Q Consensus 164 ggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am--rY~-----~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~ 236 (475)
.|.|-...+++-+++|.+.|+..+...++.++| |.+ .|+++|++++|.++|+++|+++|.-= .+-...+ +
T Consensus 294 ~GDpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPigF--vSDhiET-L 370 (485)
T PLN02449 294 AGDPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPISF--VSEHIET-L 370 (485)
T ss_pred cCCChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCcc--cccchHH-H
Confidence 367888888889999999986543112344444 445 89999999999999999999999622 1222222 2
Q ss_pred HHHHHHHHHhccCCCC-CEEEeccCCCChHHHHHHHHHHHHHHhh
Q 011898 237 RVLQNIFREDAYLSRL-PVSIIRSWYQREGYVNSMADLIQKELGK 280 (475)
Q Consensus 237 ~~l~~~~~~~~~~~~~-~v~~I~~~~~~p~yI~ala~~I~~~l~~ 280 (475)
.++.-.+++.....++ .+..++...++|.||+++++.|++.+..
T Consensus 371 ~EiDiE~re~a~e~G~~~~~rVP~LN~~p~FI~~La~lV~~~l~~ 415 (485)
T PLN02449 371 EEIDMEYRELALESGIENWGRVPALGCEPTFISDLADAVIEALPY 415 (485)
T ss_pred HHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHHhhc
Confidence 2233223322111234 4899999999999999999999998853
No 38
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=97.42 E-value=0.0012 Score=67.91 Aligned_cols=113 Identities=23% Similarity=0.387 Sum_probs=72.1
Q ss_pred cCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEccc--ccccchhhHH
Q 011898 304 AGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVS--FVSEHIETLE 381 (475)
Q Consensus 304 ~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPig--FvsDhlETL~ 381 (475)
.|.|=....++.++.|.++|...+..-++..++. .| .|++++++++|.++|+++++++|.. |..=...+..
T Consensus 63 ~~SPL~~~t~~qa~~l~~~L~~~~~~~~V~~amr--y~-----~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~ 135 (316)
T PF00762_consen 63 GGSPLNEITRRQAEALQQRLDERGVDVEVYYAMR--YG-----PPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYL 135 (316)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHH-EEEEEEEEES--SS-----SSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCeeEEEEec--cC-----CCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHH
Confidence 3566666666777888888854332113444543 23 7999999999999999999999972 2222222222
Q ss_pred HHHHHHHHHHHH-cCCceEEEcCCCCCCHHHHHHHHHHHHHHcCCc
Q 011898 382 EIDMEYKELALE-SGIENWGRVPALNCTPSFITDLADAVIEALPSA 426 (475)
Q Consensus 382 EIDiE~re~a~e-~G~~~~~rvp~LNdsp~fI~aLadlV~e~l~~~ 426 (475)
+ +..+...+ .....++.++..-+||.||+++++.|.+++...
T Consensus 136 ~---~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~i~~~l~~~ 178 (316)
T PF00762_consen 136 D---EVERALKKSRPNPKVRFIPSFYDHPAYIEALAERIREALERF 178 (316)
T ss_dssp H---HHHHHHHHTHSSSEEEEE---TT-HHHHHHHHHHHHHHHTTS
T ss_pred H---HHHHHHHhcCCCCeEEEeCCccCCHHHHHHHHHHHHHHHHhc
Confidence 2 23333333 345579999999999999999999999998875
No 39
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=97.30 E-value=0.00088 Score=58.10 Aligned_cols=62 Identities=24% Similarity=0.435 Sum_probs=51.3
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCc
Q 011898 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (475)
Q Consensus 162 IGggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPq 226 (475)
+|=||+... .+.-+.|++.|++++. ..|++||-=+.|.++++++++.+.|+++|+++|++..
T Consensus 6 vgHGSr~~~--~~~~~~l~~~l~~~~~-~~v~~~~lE~~P~i~~~l~~l~~~G~~~i~lvPl~L~ 67 (103)
T cd03413 6 MGHGTDHPS--NAVYAALEYVLREEDP-ANVFVGTVEGYPGLDDVLAKLKKAGIKKVTLMPLMLV 67 (103)
T ss_pred EECCCCchh--hhHHHHHHHHHHhcCC-CcEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEehhhe
Confidence 466788775 3677788888876654 6788888559999999999999999999999999884
No 40
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=97.27 E-value=0.0039 Score=64.32 Aligned_cols=102 Identities=24% Similarity=0.348 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHhccCCC-CCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcc-----cccccchhhHHHH
Q 011898 310 DQMEECIYLIMQRLKDRGIN-NDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPV-----SFVSEHIETLEEI 383 (475)
Q Consensus 310 ~q~~~t~~~v~e~L~~~g~~-~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPi-----gFvsDhlETL~EI 383 (475)
...++.+.++.++| +.+ ..+.+++ |. ..|+++|++++|.++|+++++++|. .+++.-. ..++
T Consensus 73 ~~T~~q~~~L~~~L---~~~~~~V~~am--ry-----~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~--~~~~ 140 (320)
T COG0276 73 VITRAQAAALEERL---DLPDFKVYLAM--RY-----GPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSY--VDEL 140 (320)
T ss_pred HHHHHHHHHHHHHh---CCCCccEEEee--cC-----CCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHH--HHHH
Confidence 33456677788887 321 1333333 22 3799999999999999999999997 2222222 1222
Q ss_pred HHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHHcCCc
Q 011898 384 DMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSA 426 (475)
Q Consensus 384 DiE~re~a~e~G~~~~~rvp~LNdsp~fI~aLadlV~e~l~~~ 426 (475)
.+.+.+..+...+..|+..-++|.||+++|+.|.++++..
T Consensus 141 ---~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~~~~~~~ 180 (320)
T COG0276 141 ---ARALKELRGQPKISTIPDYYDEPLYIEALADSIREKLAKH 180 (320)
T ss_pred ---HHHHHhcCCCCceEEecCccCChHHHHHHHHHHHHHHHhc
Confidence 2222222244579999999999999999999999999874
No 41
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.0014 Score=65.36 Aligned_cols=117 Identities=18% Similarity=0.243 Sum_probs=88.0
Q ss_pred EEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEE
Q 011898 288 MIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLA 367 (475)
Q Consensus 288 ~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvV 367 (475)
.+|...||.+.. .+.+..++.+..+.++. . ...+..+| .+-.+|+++++++.+..+|+++|+|
T Consensus 4 ~~llvgHGsr~p-------~~~~~~~~~a~~~~~~~---~-~~~v~~~f------~e~~~P~l~~~~~al~~~G~~~ivv 66 (245)
T COG2138 4 ALLLVGHGSRLP-------RGREVAEAIAARLEERG---D-FPPVRVAF------LELAEPSLREALQALVARGVDRIVV 66 (245)
T ss_pred ceeeeecCCCCc-------cHHHHHHHHHHHHHhhc---C-CccchhHH------HHhcCCCHHHHHHHHHhcCCCeEEE
Confidence 478899998632 23555555555555554 2 23567766 2344799999999999999999999
Q ss_pred EcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHHcCC
Q 011898 368 IPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPS 425 (475)
Q Consensus 368 vPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp~fI~aLadlV~e~l~~ 425 (475)
|| .|++.-..|..||..+......+.+...+. .++.||.+.+.+.+++.+....
T Consensus 67 VP-lfl~~g~H~~~DIP~~L~~~~~~~~~~~~~---p~G~~~~~~~~~~~r~~~~~~~ 120 (245)
T COG2138 67 VP-LFLAAGYHTKRDIPAELGLARQAHPQVDLS---PLGTHPAVLDLLGQRLEDAGAD 120 (245)
T ss_pred ee-hhhccCchhhcccHHHHHHhhhcCCccccc---ccCCchHHHHHHHHHHHHhccc
Confidence 99 566667778899999998887777765443 7999999999999988776654
No 42
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=96.07 E-value=0.074 Score=48.28 Aligned_cols=61 Identities=18% Similarity=0.379 Sum_probs=47.8
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCceEEEeee--c-----cCCCHHHHHHHHHHCCCCEEEEEec-CCcc
Q 011898 165 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMR--Y-----WYPFTEEAVQQIKRDRITRLVVLPL-YPQF 227 (475)
Q Consensus 165 gSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amr--Y-----~~P~iedal~~l~~~Gv~rIvvlPL-yPqY 227 (475)
|.|-...+.+.+++|.++|... ..++..||. . ..|+++++++++.+.|+++|+++|. |.-.
T Consensus 36 gd~Y~~~~~~~~~~v~~~l~~~--~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~~~i~v~p~gF~~D 104 (135)
T cd00419 36 GDPYPDQCEETARLVAERLGLP--FDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVPIGFVSD 104 (135)
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCccccc
Confidence 5778888888899999888531 224556653 2 2999999999999999999999998 7643
No 43
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=94.57 E-value=0.32 Score=45.08 Aligned_cols=58 Identities=22% Similarity=0.325 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEccc
Q 011898 307 PYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVS 371 (475)
Q Consensus 307 pY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPig 371 (475)
|=....++.++.|.++|...+ .++.+.+ |-.=| .|+++|+|+++.++|+++|+++|..
T Consensus 65 PL~~~t~~q~~~l~~~L~~~~--~~~~v~~----amry~-~P~i~~~l~~l~~~g~~~iivlPl~ 122 (159)
T cd03411 65 PLNEITRAQAEALEKALDERG--IDVKVYL----AMRYG-PPSIEEALEELKADGVDRIVVLPLY 122 (159)
T ss_pred ccHHHHHHHHHHHHHHHhccC--CCcEEEe----hHhcC-CCCHHHHHHHHHHcCCCEEEEEECC
Confidence 333334566777777774322 1232221 21123 7999999999999999999999984
No 44
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=94.49 E-value=0.34 Score=50.03 Aligned_cols=78 Identities=22% Similarity=0.394 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHhhhcCCceEEEEcc--cc---cccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHH
Q 011898 346 LKPYTDEVLVELGQKGVKSLLAIPV--SF---VSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVI 420 (475)
Q Consensus 346 L~P~t~d~L~~L~~~G~k~VvVvPi--gF---vsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp~fI~aLadlV~ 420 (475)
-.|-|+|+++++.+.|++++|++|- -| ++... |.+|...+++.-.+.++ .+..++--..++.+|+++|+.|.
T Consensus 138 ~~PlTEea~~qikkd~v~r~VafsqYPQyS~sTsGSS--ln~l~r~~r~~~~~~~~-~wsiIdrW~t~~glIkafA~~I~ 214 (395)
T KOG1321|consen 138 AHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSS--LNELWRQFREDGYERDI-KWSIIDRWPTREGLIKAFAENIE 214 (395)
T ss_pred cCcccHHHHHHHHhcCceeEEeeccCCceeeecCccc--HHHHHHHHHhcCcccCC-ceEeeccccccchHHHHHHHHHH
Confidence 3799999999999999999999984 22 22333 66666667777677787 48999999999999999999999
Q ss_pred HHcCCc
Q 011898 421 EALPSA 426 (475)
Q Consensus 421 e~l~~~ 426 (475)
+.|+.-
T Consensus 215 keL~~F 220 (395)
T KOG1321|consen 215 KELQTF 220 (395)
T ss_pred HHHHhc
Confidence 998753
No 45
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=94.49 E-value=0.12 Score=52.05 Aligned_cols=106 Identities=16% Similarity=0.291 Sum_probs=68.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHH----
Q 011898 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRV---- 238 (475)
Q Consensus 163 GggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~---- 238 (475)
|=|+|-...+ --..|+..|++.+ .-.|++|.-=+.|.+++++++|++.|++++.++||.-.-. -++.++
T Consensus 148 GHGt~h~an~--~Y~~l~~~l~~~~-~~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L~PlMlVAG----dHa~nDmaGd 220 (262)
T PF06180_consen 148 GHGTPHPANA--AYSALQAMLKKHG-YPNVFVGTVEGYPSLEDVIARLKKKGIKKVHLIPLMLVAG----DHAKNDMAGD 220 (262)
T ss_dssp E---SCHHHH--HHHHHHHHHHCCT--TTEEEEETTSSSBHHHHHHHHHHHT-SEEEEEEESSS------HHHHCCCCSS
T ss_pred eCCCCCCccH--HHHHHHHHHHhCC-CCeEEEEEeCCCCCHHHHHHHHHhcCCCeEEEEecccccc----hhhhhhhcCC
Confidence 6667665432 4466777787653 1358999988999999999999999999999999976321 122222
Q ss_pred ----HHHHHHHhccCCCCC-EEEeccCCCChHHHHHHHHHHHHHHh
Q 011898 239 ----LQNIFREDAYLSRLP-VSIIRSWYQREGYVNSMADLIQKELG 279 (475)
Q Consensus 239 ----l~~~~~~~~~~~~~~-v~~I~~~~~~p~yI~ala~~I~~~l~ 279 (475)
+...+++.+ ++ -.+.+..+..|.+.+.|.++|+++++
T Consensus 221 e~dSWks~L~~~G----~~v~~~l~GLGE~~~i~~ifi~hl~~ai~ 262 (262)
T PF06180_consen 221 EEDSWKSRLEAAG----FEVTCVLKGLGEYPAIQQIFIEHLKEAIE 262 (262)
T ss_dssp STTSHHHHHHHTT-----EEEE----GGGSHHHHHHHHHHHHHHH-
T ss_pred CcchHHHHHHHCC----CEEEEEeccCcCCHHHHHHHHHHHHHHhC
Confidence 233444432 22 23678899999999999999999873
No 46
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=92.07 E-value=1.9 Score=42.58 Aligned_cols=87 Identities=14% Similarity=0.298 Sum_probs=65.8
Q ss_pred eEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHH----HHHHHHHHHhccCCCCCEEEeccCCCChHH
Q 011898 191 NVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI----RVLQNIFREDAYLSRLPVSIIRSWYQREGY 266 (475)
Q Consensus 191 ~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~----~~l~~~~~~~~~~~~~~v~~I~~~~~~p~y 266 (475)
.|++|--=+.|.++.+++.|++.|++++-++|+...-....+-... +.+.+.+++.+. + + -.+....+..|.+
T Consensus 169 ~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMasddedswk~il~~~G~-~-v-~~~l~GLGE~~~i 245 (265)
T COG4822 169 NVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMASDDEDSWKNILEKNGF-K-V-EVYLHGLGENPAI 245 (265)
T ss_pred ceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEeechhhhhhhcccchHHHHHHHHhCCc-e-e-EEEeecCCCcHHH
Confidence 7888888899999999999999999999999997754333332222 333344544332 1 1 4568889999999
Q ss_pred HHHHHHHHHHHHhh
Q 011898 267 VNSMADLIQKELGK 280 (475)
Q Consensus 267 I~ala~~I~~~l~~ 280 (475)
-..+.++|+.+++.
T Consensus 246 q~ifi~Hik~aie~ 259 (265)
T COG4822 246 QAIFIDHIKDAIER 259 (265)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999865
No 47
>PRK10481 hypothetical protein; Provisional
Probab=86.95 E-value=6 Score=39.19 Aligned_cols=132 Identities=13% Similarity=0.126 Sum_probs=81.9
Q ss_pred CceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEec--CCcccccChHHHHHHHHHHHHHhccCCCCCEEEeccCCCChHH
Q 011898 189 PVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPL--YPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGY 266 (475)
Q Consensus 189 ~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPL--yPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~y 266 (475)
.-.|.++=++..|.+.+.+++|.++|++-|+++.. ||-..... . .. -.|.+.| +.+
T Consensus 65 G~~v~~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r-------------~--~l-~~P~~~i------~~l 122 (224)
T PRK10481 65 GQQVHVSKQKVERDLQSVIEVLDNQGYDVILLLCTGEFPSLTARN-------------A--IL-LEPSRIL------PPL 122 (224)
T ss_pred CCEEEEEHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCCCccccC-------------c--cc-cCchhhH------HHH
Confidence 45788999999999999999999999999998875 34211100 0 00 0122333 334
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCC
Q 011898 267 VNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWL 346 (475)
Q Consensus 267 I~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL 346 (475)
+.|+. ......+ ++ ||+.++....+...+. |+ +..++-.| +|.
T Consensus 123 v~Al~-----------~g~riGV-it--------------P~~~qi~~~~~kw~~~----G~--~v~~~~as-----py~ 165 (224)
T PRK10481 123 VAAIV-----------GGHQVGV-IV--------------PVEEQLAQQAQKWQVL----QK--PPVFALAS-----PYH 165 (224)
T ss_pred HHHhc-----------CCCeEEE-EE--------------eCHHHHHHHHHHHHhc----CC--ceeEeecC-----CCC
Confidence 44332 1122332 22 6888887776555433 55 33333333 343
Q ss_pred CC--CHHHHHHHhhhcCCceEEEEcccccccchhh
Q 011898 347 KP--YTDEVLVELGQKGVKSLLAIPVSFVSEHIET 379 (475)
Q Consensus 347 ~P--~t~d~L~~L~~~G~k~VvVvPigFvsDhlET 379 (475)
++ .+.++.++|...|..-|++-|.||.++|.+.
T Consensus 166 ~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~ 200 (224)
T PRK10481 166 GSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDL 200 (224)
T ss_pred CCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHH
Confidence 33 4666777787889999999999999866544
No 48
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=82.26 E-value=6.9 Score=35.38 Aligned_cols=104 Identities=16% Similarity=0.156 Sum_probs=68.2
Q ss_pred EEEEEccCCCCCcCcHHHHHHhhcCCC--CcccCChhhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHHHHH
Q 011898 101 GVLLLNLGGPDTLHDVQPFLFNLFADP--DIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQA 178 (475)
Q Consensus 101 aVLLlNlG~P~s~~dV~~FL~~~l~D~--~Vi~lP~~~~~~~~~L~~~Ia~~R~~k~~~~Y~~IGggSPL~~~T~~qa~~ 178 (475)
-|+|.+.|+ +--+-=..|...||.+. .|++++.. .+...++...+ .+....|+ -|-+..-+......
T Consensus 4 ~v~~a~~g~-D~Hd~g~~iv~~~l~~~GfeVi~lg~~-----~s~e~~v~aa~----e~~adii~-iSsl~~~~~~~~~~ 72 (132)
T TIGR00640 4 RILVAKMGQ-DGHDRGAKVIATAYADLGFDVDVGPLF-----QTPEEIARQAV----EADVHVVG-VSSLAGGHLTLVPA 72 (132)
T ss_pred EEEEEeeCC-CccHHHHHHHHHHHHhCCcEEEECCCC-----CCHHHHHHHHH----HcCCCEEE-EcCchhhhHHHHHH
Confidence 488899998 44444456888888877 66776521 12334443321 23444454 47777888888899
Q ss_pred HHHHHHhcCC-CceEEEeeeccCCCHHHHHHHHHHCCCCEEE
Q 011898 179 LKTALEAKNL-PVNVYVGMRYWYPFTEEAVQQIKRDRITRLV 219 (475)
Q Consensus 179 L~~~L~~~~~-~~~V~~amrY~~P~iedal~~l~~~Gv~rIv 219 (475)
+.+.|++.+. +..|.+| +.+. .+-.+++++.|+++++
T Consensus 73 ~~~~L~~~g~~~i~vivG---G~~~-~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 73 LRKELDKLGRPDILVVVG---GVIP-PQDFDELKEMGVAEIF 110 (132)
T ss_pred HHHHHHhcCCCCCEEEEe---CCCC-hHhHHHHHHCCCCEEE
Confidence 9999988775 6778886 3232 3446678999999875
No 49
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=80.46 E-value=16 Score=35.93 Aligned_cols=199 Identities=18% Similarity=0.265 Sum_probs=106.6
Q ss_pred CCCCc-hHHHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHH
Q 011898 163 GGGSP-LRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 241 (475)
Q Consensus 163 GggSP-L~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~ 241 (475)
+|.+| -.+.|-++.++|++ .++-|+.|..|- +++++.++. ..-..+.++++......
T Consensus 28 ~~~dpH~~~~~p~d~~~l~~------Adlvv~~G~~~e-~~l~~~~~~---~~~~~~~~i~~~~~~~~------------ 85 (256)
T PF01297_consen 28 PGADPHDYEPTPSDIKKLQK------ADLVVYNGLGLE-PWLEKLLES---SQNPKVKVIDLSEGIDL------------ 85 (256)
T ss_dssp TTSCTTT----HHHHHHHHH------SSEEEES-TTTS-CCHHHHHHT---TTTTTTEEEETTTTS-G------------
T ss_pred CCCccccccCChHHHHHHHh------CCEEEEeCCccc-hhhhhhhhc---ccccccceEEeeccccc------------
Confidence 34454 55667778777764 378888887666 888888732 33345566676554311
Q ss_pred HHHHhccCCCCCEEEeccCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHH
Q 011898 242 IFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQ 321 (475)
Q Consensus 242 ~~~~~~~~~~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e 321 (475)
.+... =+++|-+|.....+++.|.+.|.+.. |+.. ...++|-..|..++.+..+.+.+
T Consensus 86 --~~~~~--------npH~Wldp~~~~~~~~~Ia~~L~~~~-P~~~-----------~~y~~N~~~~~~~L~~l~~~~~~ 143 (256)
T PF01297_consen 86 --DHHGH--------NPHVWLDPENAKKMAEAIADALSELD-PANK-----------DYYEKNAEKYLKELDELDAEIKE 143 (256)
T ss_dssp --STTCB--------ESTGGGSHHHHHHHHHHHHHHHHHHT-GGGH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccCCC--------CCchHHHHHHHHHHHHHHHHHHHHhC-ccch-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 34678889999999999999987652 2211 11223455677777777777777
Q ss_pred HHhccCCCCCe------------------EEEEeCCCCCCCCCCCCH-HHHHHHhhhcCCceEEEEcccccccchhhHHH
Q 011898 322 RLKDRGINNDH------------------TLAYQSRVGPVKWLKPYT-DEVLVELGQKGVKSLLAIPVSFVSEHIETLEE 382 (475)
Q Consensus 322 ~L~~~g~~~~~------------------~lafQSr~Gp~~WL~P~t-~d~L~~L~~~G~k~VvVvPigFvsDhlETL~E 382 (475)
.+.. +.... .++.++ .++..=..|.. .+..+.+.+.|+ ++++....+-..-+++
T Consensus 144 ~~~~--~~~~~~v~~h~~~~Y~~~~~gl~~~~~~~-~~~~~~ps~~~l~~l~~~ik~~~v-~~i~~e~~~~~~~~~~--- 216 (256)
T PF01297_consen 144 KLAK--LPGRPVVVYHDAFQYFAKRYGLKVIGVIE-ISPGEEPSPKDLAELIKLIKENKV-KCIFTEPQFSSKLAEA--- 216 (256)
T ss_dssp HHTT--SSGGEEEEEESTTHHHHHHTT-EEEEEES-SSSSSSS-HHHHHHHHHHHHHTT--SEEEEETTS-THHHHH---
T ss_pred Hhhc--ccCCeEEEEChHHHHHHHhcCCceeeeec-cccccCCCHHHHHHHHHHhhhcCC-cEEEecCCCChHHHHH---
Confidence 7642 11111 122221 12211112322 333344455555 4455566666654444
Q ss_pred HHHHHHHHHHHcCCceEEEcCCC----CCCHHHHHHHHHHHH
Q 011898 383 IDMEYKELALESGIENWGRVPAL----NCTPSFITDLADAVI 420 (475)
Q Consensus 383 IDiE~re~a~e~G~~~~~rvp~L----Ndsp~fI~aLadlV~ 420 (475)
++++.|++ +..+..+ .+.+.+++.|.+.+.
T Consensus 217 -------la~~~g~~-vv~ld~l~~~~~~~~~y~~~~~~n~~ 250 (256)
T PF01297_consen 217 -------LAKETGVK-VVYLDPLGGGIPDGDSYLDMMEQNLD 250 (256)
T ss_dssp -------HHHCCT-E-EEESSTTCSTTSSTTSHHHHHHHHHH
T ss_pred -------HHHHcCCc-EEEeCCCcCCCCCcCCHHHHHHHHHH
Confidence 47788985 6777777 556677777765443
No 50
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=74.50 E-value=68 Score=31.35 Aligned_cols=88 Identities=10% Similarity=0.120 Sum_probs=53.6
Q ss_pred CceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccc----------ccChHHHHHHHHHHHHHhccCCCCCEEEec
Q 011898 189 PVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFS----------ISTTGSSIRVLQNIFREDAYLSRLPVSIIR 258 (475)
Q Consensus 189 ~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS----------~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~ 258 (475)
+++|.+++-=..|+..+..+..++.|-+-++-+||=|+-- ..+-......+..++..-...-++.=+...
T Consensus 20 p~pvT~ai~P~~~~~~~~a~~a~~~G~EvllhlPMep~~~~~~gp~~L~~~~~~~~i~~~l~~al~~vp~a~GvnNhmGS 99 (213)
T PF04748_consen 20 PFPVTFAILPYAPYSREWAERARAAGHEVLLHLPMEPKGYKDPGPGALLTGMSEEEIRKRLEAALARVPGAVGVNNHMGS 99 (213)
T ss_dssp STTCEEEEETTSTTHHHHHHHHHHCT-EEEEEEEE--TTTT---TT-B-TTS-HHHHHHHHHHHHCCSTT-SEEEEEE-C
T ss_pred CCCeEEEECCCCCChHHHHHHHHHcCCEEEEeCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHCCCcEEEecCCCc
Confidence 6788898888889999999999999999999999988751 122222333333333322111233355666
Q ss_pred cCCCChHHHHHHHHHHHH
Q 011898 259 SWYQREGYVNSMADLIQK 276 (475)
Q Consensus 259 ~~~~~p~yI~ala~~I~~ 276 (475)
.+..++...+.+.+.+++
T Consensus 100 ~~T~~~~~m~~vl~~l~~ 117 (213)
T PF04748_consen 100 RFTSDREAMRWVLEVLKE 117 (213)
T ss_dssp CHHC-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 777788777766655544
No 51
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=71.62 E-value=13 Score=33.79 Aligned_cols=67 Identities=18% Similarity=0.316 Sum_probs=46.2
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCC
Q 011898 261 YQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRV 340 (475)
Q Consensus 261 ~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~ 340 (475)
+..+.-.+.+.+.|+..++.. +|++ .|++|+||-| +-|.-| ++++|++.|-..|...++..-|-+..
T Consensus 28 ~GQhla~~~v~~ai~~~l~~~-~p~K-pLVlSfHG~t-----GtGKn~------v~~liA~~ly~~G~~S~~V~~f~~~~ 94 (127)
T PF06309_consen 28 FGQHLAVEVVVNAIKGHLANP-NPRK-PLVLSFHGWT-----GTGKNF------VSRLIAEHLYKSGMKSPFVHQFIATH 94 (127)
T ss_pred cCcHHHHHHHHHHHHHHHcCC-CCCC-CEEEEeecCC-----CCcHHH------HHHHHHHHHHhcccCCCceeeecccc
Confidence 455666677777788777653 3433 5999999987 457666 57788888876677666666665543
No 52
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=66.63 E-value=1.5e+02 Score=29.86 Aligned_cols=150 Identities=9% Similarity=0.008 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHHCCCCEEEE-EecCCcccccChH----HHHHHHHHHHHHhccC-CCCCEEEeccCCCChHHHHHHHHH
Q 011898 200 YPFTEEAVQQIKRDRITRLVV-LPLYPQFSISTTG----SSIRVLQNIFREDAYL-SRLPVSIIRSWYQREGYVNSMADL 273 (475)
Q Consensus 200 ~P~iedal~~l~~~Gv~rIvv-lPLyPqYS~sTtg----S~~~~l~~~~~~~~~~-~~~~v~~I~~~~~~p~yI~ala~~ 273 (475)
.|..+ .++...+.|++.|.+ +|..+.+.....+ -+++.+.+.++..+.. -.+.+...+.|...+.++..+++.
T Consensus 71 r~~~~-di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~ 149 (262)
T cd07948 71 RCHMD-DARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRA 149 (262)
T ss_pred cCCHH-HHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHH
Confidence 44444 456666789997655 4555443332222 3344444433321111 135577778888888888777766
Q ss_pred HHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHH
Q 011898 274 IQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEV 353 (475)
Q Consensus 274 I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~ 353 (475)
+.+. + .+. +-+ .+.-|--+|.++.+.++.+.+.+ +. ++.+-++--.| =.+..+
T Consensus 150 ~~~~----g-~~~--i~l---------~Dt~G~~~P~~v~~~~~~~~~~~---~~--~i~~H~Hn~~G------la~an~ 202 (262)
T cd07948 150 VDKL----G-VNR--VGI---------ADTVGIATPRQVYELVRTLRGVV---SC--DIEFHGHNDTG------CAIANA 202 (262)
T ss_pred HHHc----C-CCE--EEE---------CCcCCCCCHHHHHHHHHHHHHhc---CC--eEEEEECCCCC------hHHHHH
Confidence 6543 1 221 211 23357778999999999998876 32 34443344343 335556
Q ss_pred HHHhhhcCCceEEEE--cccccccchh
Q 011898 354 LVELGQKGVKSLLAI--PVSFVSEHIE 378 (475)
Q Consensus 354 L~~L~~~G~k~VvVv--PigFvsDhlE 378 (475)
+..+ +.|++.|-.- -+|=-+.|.-
T Consensus 203 ~~a~-~aG~~~vd~s~~GlGeraGn~~ 228 (262)
T cd07948 203 YAAL-EAGATHIDTTVLGIGERNGITP 228 (262)
T ss_pred HHHH-HhCCCEEEEeccccccccCCcc
Confidence 6655 4588766643 3344455553
No 53
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=65.73 E-value=79 Score=31.06 Aligned_cols=133 Identities=17% Similarity=0.247 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCC-CCeEEEEeCCCCC-----
Q 011898 269 SMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGIN-NDHTLAYQSRVGP----- 342 (475)
Q Consensus 269 ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~-~~~~lafQSr~Gp----- 342 (475)
++.+.+.+.++..+. + .+++-.||-= -.+.+-+..++++ ...+ |++ ..+-.+|-|....
T Consensus 3 ~~~~~~~~~l~~~~~-~--~vlvfVHGyn--------~~f~~a~~r~aql-~~~~---~~~~~~i~FsWPS~g~~~~Y~~ 67 (233)
T PF05990_consen 3 AFQAQLNQRLAKSPD-K--EVLVFVHGYN--------NSFEDALRRAAQL-AHDL---GFPGVVILFSWPSDGSLLGYFY 67 (233)
T ss_pred HHHHHHHHHHhhCCC-C--eEEEEEeCCC--------CCHHHHHHHHHHH-HHHh---CCCceEEEEEcCCCCChhhhhh
Confidence 556677777765432 2 3555668862 2355566666653 4444 553 2467788886543
Q ss_pred ----CCCCCCCHHHHHHHhhhc-CCceEEEEccccccc-chhhHHHHHHHHHH--HHHHcCCceEEEcCCCCCCHHHHHH
Q 011898 343 ----VKWLKPYTDEVLVELGQK-GVKSLLAIPVSFVSE-HIETLEEIDMEYKE--LALESGIENWGRVPALNCTPSFITD 414 (475)
Q Consensus 343 ----~~WL~P~t~d~L~~L~~~-G~k~VvVvPigFvsD-hlETL~EIDiE~re--~a~e~G~~~~~rvp~LNdsp~fI~a 414 (475)
..|-+|.+.+.|+.|.+. |.++|-++.=+.=+- -+|+|..+..+... .... +.++..+.+=-+...|.+.
T Consensus 68 d~~~a~~s~~~l~~~L~~L~~~~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~--~~~viL~ApDid~d~f~~~ 145 (233)
T PF05990_consen 68 DRESARFSGPALARFLRDLARAPGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKAR--FDNVILAAPDIDNDVFRSQ 145 (233)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhh--hheEEEECCCCCHHHHHHH
Confidence 237788888899999888 899999987655442 24666666666542 2122 3355555544555666666
Q ss_pred HHHH
Q 011898 415 LADA 418 (475)
Q Consensus 415 Ladl 418 (475)
+..+
T Consensus 146 ~~~~ 149 (233)
T PF05990_consen 146 LPDL 149 (233)
T ss_pred HHHH
Confidence 5533
No 54
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=65.20 E-value=1.3e+02 Score=28.77 Aligned_cols=126 Identities=17% Similarity=0.251 Sum_probs=70.0
Q ss_pred HHHHHHCCCCEEEEEecCCcccccC--hHHHHHHHHHHHHHhccCCCCCEEEeccCCCChHHHHHHHHHHHHHHhhcCCC
Q 011898 207 VQQIKRDRITRLVVLPLYPQFSIST--TGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKP 284 (475)
Q Consensus 207 l~~l~~~Gv~rIvvlPLyPqYS~sT--tgS~~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~ 284 (475)
+..+.+.|.+-+.++-+.|...... .+.-.+.+.+..+. -++++.+++--.+.+.|.+.+.+.+++..++ + -
T Consensus 16 l~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~----lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~-g-~ 89 (194)
T cd01994 16 LYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEA----MGIPLIRIEISGEEEDEVEDLKELLRKLKEE-G-V 89 (194)
T ss_pred HHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHH----cCCcEEEEeCCCCchHHHHHHHHHHHHHHHc-C-C
Confidence 3445556765444444445422110 11122333333222 2456666664447899999998888876543 1 1
Q ss_pred CceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCce
Q 011898 285 EEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKS 364 (475)
Q Consensus 285 ~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~ 364 (475)
+ .++ .||-+-+...+=.+.+.+++ |+. .+. | =|-. +.++.++++.+.|++-
T Consensus 90 ~--~vv-------------~G~i~sd~~~~~~e~~~~~~---gl~-~~~--------P-LW~~-~~~~ll~e~~~~g~~~ 140 (194)
T cd01994 90 D--AVV-------------FGAILSEYQRTRVERVCERL---GLE-PLA--------P-LWGR-DQEELLREMIEAGFKA 140 (194)
T ss_pred C--EEE-------------ECccccHHHHHHHHHHHHHc---CCE-EEe--------c-ccCC-CHHHHHHHHHHcCCeE
Confidence 1 232 25555444555667788887 662 111 1 1654 4567999999999987
Q ss_pred EEE
Q 011898 365 LLA 367 (475)
Q Consensus 365 VvV 367 (475)
+++
T Consensus 141 ~iv 143 (194)
T cd01994 141 III 143 (194)
T ss_pred EEE
Confidence 663
No 55
>PRK03906 mannonate dehydratase; Provisional
Probab=64.19 E-value=12 Score=40.06 Aligned_cols=66 Identities=18% Similarity=0.380 Sum_probs=49.6
Q ss_pred CCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHH
Q 011898 344 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSF 411 (475)
Q Consensus 344 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp~f 411 (475)
.|.+|.-...|+.+.+.|++.|+..-...-.+-+=|+.+| .+.++..+++|. ++..|++++-|+..
T Consensus 6 rw~g~~d~~~l~~~rQ~G~~~iv~~l~~~~~g~~W~~~~i-~~~~~~ie~~Gl-~~~vvEs~pv~~~I 71 (385)
T PRK03906 6 RWFGPNDPVTLEDIRQPGATGIVTALHDIPVGEVWPVEEI-LARKAEIEAAGL-EWSVVESVPVHEDI 71 (385)
T ss_pred EEeCCCCcchHHHHhcCCCCceeecCCCCCCCCCCCHHHH-HHHHHHHHHcCC-eEEEEeCCCccHHH
Confidence 6999999999999999999999965433323344445554 345777788998 59999999998755
No 56
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=63.49 E-value=1.7e+02 Score=29.37 Aligned_cols=207 Identities=16% Similarity=0.188 Sum_probs=104.5
Q ss_pred EEEEEEccCCCCCcCcHHHHHHhhc-CCCCcccC--ChhhhhhhhHHH--HHHHhccChhhHHhhhccCCCCchHHHHHH
Q 011898 100 VGVLLLNLGGPDTLHDVQPFLFNLF-ADPDIIRL--PRLFRFLQWPLA--KLISVVRAPKSKEGYAAIGGGSPLRKITDE 174 (475)
Q Consensus 100 ~aVLLlNlG~P~s~~dV~~FL~~~l-~D~~Vi~l--P~~~~~~~~~L~--~~Ia~~R~~k~~~~Y~~IGggSPL~~~T~~ 174 (475)
-=|.-+..|-|+- +.-.+++..+- .+-++|+| | +-.|++ +.|.. ...+.+.+|--+...- +
T Consensus 11 ~li~y~~aG~P~~-~~~~~~~~~l~~~Gad~iElGiP-----fsDP~aDGpvIq~-------a~~~al~~G~~~~~~~-~ 76 (256)
T TIGR00262 11 AFIPFVTAGDPTL-ETSLEIIKTLIEAGADALELGVP-----FSDPLADGPTIQA-------ADLRALRAGMTPEKCF-E 76 (256)
T ss_pred eEEEEEeCCCCCH-HHHHHHHHHHHHcCCCEEEECCC-----CCCCCCcCHHHHH-------HHHHHHHcCCCHHHHH-H
Confidence 3455677788853 22233444432 34577765 5 344554 34432 2333343333222221 2
Q ss_pred HHHHHHHHHHhcCCCceEEEeeeccCC----CHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHHhccCC
Q 011898 175 QAQALKTALEAKNLPVNVYVGMRYWYP----FTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLS 250 (475)
Q Consensus 175 qa~~L~~~L~~~~~~~~V~~amrY~~P----~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~ 250 (475)
..++ +.+...+.++. .|-|.+| .+++-++++++.|++-+++--+ |. . -...+.+.+++.
T Consensus 77 ~v~~----ir~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDl-p~------e-e~~~~~~~~~~~---- 139 (256)
T TIGR00262 77 LLKK----VRQKHPNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADL-PL------E-ESGDLVEAAKKH---- 139 (256)
T ss_pred HHHH----HHhcCCCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCC-Ch------H-HHHHHHHHHHHC----
Confidence 2233 33322356665 9999999 5566788899999997766655 41 1 122333334443
Q ss_pred CCC-EEEeccCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCC
Q 011898 251 RLP-VSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGIN 329 (475)
Q Consensus 251 ~~~-v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~ 329 (475)
++. +-++.+= ..+.-++.+++ .. +...++.|-.|.- +....+..++.+..+.+.+.. +.
T Consensus 140 gl~~i~lv~P~-T~~eri~~i~~-------~~---~gfiy~vs~~G~T-----G~~~~~~~~~~~~i~~lr~~~---~~- 199 (256)
T TIGR00262 140 GVKPIFLVAPN-ADDERLKQIAE-------KS---QGFVYLVSRAGVT-----GARNRAASALNELVKRLKAYS---AK- 199 (256)
T ss_pred CCcEEEEECCC-CCHHHHHHHHH-------hC---CCCEEEEECCCCC-----CCcccCChhHHHHHHHHHhhc---CC-
Confidence 223 3344443 22333333222 11 2234556655542 111235566777777777654 22
Q ss_pred CCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEE
Q 011898 330 NDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAI 368 (475)
Q Consensus 330 ~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVv 368 (475)
++.+.| |=++.+.++++.+.|..-|+|=
T Consensus 200 -pi~vgf----------GI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 200 -PVLVGF----------GISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred -CEEEeC----------CCCCHHHHHHHHHcCCCEEEEC
Confidence 444432 3456677888888888655543
No 57
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=62.61 E-value=55 Score=37.28 Aligned_cols=132 Identities=14% Similarity=0.112 Sum_probs=66.2
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCHH--HHHHHHHHCCCC--------E---------EEEE
Q 011898 161 AIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTE--EAVQQIKRDRIT--------R---------LVVL 221 (475)
Q Consensus 161 ~IGggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~ie--dal~~l~~~Gv~--------r---------Ivvl 221 (475)
.++|.|||...-++||++|.+.|++.. .+. .-.=|+.|... ++.+-+.+.+.. . +...
T Consensus 437 r~~Gd~pLt~~G~~qA~~l~~~l~~~~-~~~--~~~V~sSpl~Ra~~TA~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 513 (664)
T PTZ00322 437 RIGGNSRLTERGRAYSRALFEYFQKEI-STT--SFTVMSSCAKRCTETVHYFAEESILQQSTASAASSQSPSLNCRVLYF 513 (664)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHhcc-CCC--CcEEEcCCcHHHHHHHHHHHhccccccccccccccccccccccccch
Confidence 457789999999999999999997531 111 01225667643 444444432211 0 1111
Q ss_pred ec-----CCcccccChHHHHHHHHHHHHHhccCCCCCEEEeccCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEecCCC
Q 011898 222 PL-----YPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGV 296 (475)
Q Consensus 222 PL-----yPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHgl 296 (475)
|. |-.+-..|.....+..++.+..+... +.. ..++.-+.|.+.+..|+...+.......+ .+|+++||-
T Consensus 514 ~~L~Ei~fG~wEG~t~~ei~~~~p~~~~~~~~d---~~~--~~~P~GES~~d~~~~R~~~~i~~l~~~~~-~ilvVsHg~ 587 (664)
T PTZ00322 514 PTLDDINHGDCEGQLLSDVRRTMPNTLQSMKAD---PYY--TAWPNGECIHQVFNARLEPHIHDIQASTT-PVLVVSHLH 587 (664)
T ss_pred hhhCcCCCcccCCCCHHHHHHhCcHHHHHHHhC---CCc--CCCCCCcCHHHHHHHHHHHHHHHHHccCC-CEEEEeCcH
Confidence 11 11122222222111111222221111 111 13445566888777777777765422222 378899998
Q ss_pred chhhh
Q 011898 297 PVSYV 301 (475)
Q Consensus 297 P~~~v 301 (475)
.++.+
T Consensus 588 vir~l 592 (664)
T PTZ00322 588 LLQGL 592 (664)
T ss_pred HHHHH
Confidence 77654
No 58
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.12 E-value=1.7e+02 Score=29.54 Aligned_cols=167 Identities=14% Similarity=0.159 Sum_probs=88.2
Q ss_pred CceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccc----------ccChHHHHHHHHHHHHHhccCCCCCEEEec
Q 011898 189 PVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFS----------ISTTGSSIRVLQNIFREDAYLSRLPVSIIR 258 (475)
Q Consensus 189 ~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS----------~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~ 258 (475)
+-+|.+|+-=.-|...+-.++.++.|-+=++=+||-|..- ..+.+...+.+.+++.+-.+.-++-=+...
T Consensus 52 p~eVTlA~~P~~~~~~~~~~~A~~~G~evlih~PmeP~~~~~~e~gtL~~~~s~~e~~~rl~~a~~~v~~~~GlnNhmGs 131 (250)
T COG2861 52 PPEVTLAFAPFAPHAREWAQKARNAGHEVLIHMPMEPFSYPKIEPGTLRPGMSAEEILRRLRKAMNKVPDAVGLNNHMGS 131 (250)
T ss_pred CccceEEecCCCchhHHHHHHHHhcCCEEEEeccCCcccCCCCCCCCcccCCCHHHHHHHHHHHHhhCccceeehhhhhh
Confidence 4578888888888888999999999999999999977432 223334445555555442222223234455
Q ss_pred cCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCCh------------HHHHHHHHHHHHHHHhcc
Q 011898 259 SWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPY------------RDQMEECIYLIMQRLKDR 326 (475)
Q Consensus 259 ~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY------------~~q~~~t~~~v~e~L~~~ 326 (475)
.|-.++...+.+.+.+++.---|- .+. -++||++.+..++-|=|| ...+.+-.+.+....+..
T Consensus 132 ~~tsn~~aM~~~m~~Lk~r~l~fl-Ds~----T~a~S~a~~iAk~~gVp~~~rdvfLD~e~~~~~V~kql~~~~~~Ark~ 206 (250)
T COG2861 132 RFTSNEDAMEKLMEALKERGLYFL-DSG----TIANSLAGKIAKEIGVPVIKRDVFLDDEDTEAAVLKQLDAAEKLARKN 206 (250)
T ss_pred hhcCcHHHHHHHHHHHHHCCeEEE-ccc----ccccchhhhhHhhcCCceeeeeeeecCcCCHHHHHHHHHHHHHHHHhc
Confidence 555666655555444433110000 111 277877776653334332 112222222221111111
Q ss_pred CCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhh-cCCceEEEEccc
Q 011898 327 GINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQ-KGVKSLLAIPVS 371 (475)
Q Consensus 327 g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~-~G~k~VvVvPig 371 (475)
|. .++ +|.. .|.|-++|++... .+.+.|-+||++
T Consensus 207 G~----ai~----IGh~---~~~Tv~vl~~~~~~l~~~gIelV~~s 241 (250)
T COG2861 207 GS----AIG----IGHP---HKNTVAVLQQWLDELPARGIELVPVS 241 (250)
T ss_pred Cc----eEE----ecCC---chhHHHHHHHHHHhCCCCCeEEecHH
Confidence 21 111 1321 5788888877644 355677777765
No 59
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=59.89 E-value=1.5e+02 Score=27.76 Aligned_cols=53 Identities=25% Similarity=0.338 Sum_probs=33.1
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCHHH--HHHHHH-HCCCCEEEEEe
Q 011898 165 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEE--AVQQIK-RDRITRLVVLP 222 (475)
Q Consensus 165 gSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~ied--al~~l~-~~Gv~rIvvlP 222 (475)
.+||.....+||+.+.+.|.....++... |+.|.... +.+.+. ..|.+ +.+.+
T Consensus 26 d~pLt~~G~~QA~~l~~~l~~~~~~~~~i----~sS~l~Ra~~TA~~~a~~~~~~-~~~~~ 81 (208)
T COG0406 26 DSPLTEEGRAQAEALAERLAARDIGFDAI----YSSPLKRAQQTAEPLAEELGLP-LEVDD 81 (208)
T ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCEE----EECchHHHHHHHHHHHHhcCCC-ceecC
Confidence 46999999999999999998543232222 66776543 333333 34554 44444
No 60
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=59.39 E-value=2.3e+02 Score=29.63 Aligned_cols=118 Identities=13% Similarity=0.186 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHhhcC-CCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCC
Q 011898 264 EGYVNSMADLIQKELGKFQ-KPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGP 342 (475)
Q Consensus 264 p~yI~ala~~I~~~l~~~~-~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp 342 (475)
+.|++++.+-|+...+.++ ....+.-||-.-|.|.-. -..++.+..+.+.+.. ++...++++.-++-+
T Consensus 36 ~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l-------~~~~l~~ll~~i~~~~---~~~~~~e~t~e~~p~- 104 (375)
T PRK05628 36 DGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLL-------GAEGLARVLDAVRDTF---GLAPGAEVTTEANPE- 104 (375)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccC-------CHHHHHHHHHHHHHhC---CCCCCCEEEEEeCCC-
Confidence 4577777666665443331 111233444444555211 1345555555555544 433334444333211
Q ss_pred CCCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhH-----HHHHHHHHHHHHHcCCc
Q 011898 343 VKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETL-----EEIDMEYKELALESGIE 397 (475)
Q Consensus 343 ~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL-----~EIDiE~re~a~e~G~~ 397 (475)
--+++.|+.|.+.|+++|-+=.=+|-.+.++.+ .+--.+.-+.+.+.|+.
T Consensus 105 -----~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~ 159 (375)
T PRK05628 105 -----STSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFE 159 (375)
T ss_pred -----CCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 124566777777777665554445554544444 22223344555666664
No 61
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=58.49 E-value=1.8e+02 Score=28.20 Aligned_cols=146 Identities=12% Similarity=0.142 Sum_probs=80.9
Q ss_pred HHHHHHHHHCCCCEEEEEecCCcc--cc----cChHHHHHHHHHHHHHhccCC-CCCEEEeccCC--CChHHHHHHHHHH
Q 011898 204 EEAVQQIKRDRITRLVVLPLYPQF--SI----STTGSSIRVLQNIFREDAYLS-RLPVSIIRSWY--QREGYVNSMADLI 274 (475)
Q Consensus 204 edal~~l~~~Gv~rIvvlPLyPqY--S~----sTtgS~~~~l~~~~~~~~~~~-~~~v~~I~~~~--~~p~yI~ala~~I 274 (475)
++.++.+.+.|++.|.++ +.... .. .+....++.+.+.++...... .+.+.+..-+. .++.++..+++.+
T Consensus 77 ~~~i~~a~~~g~~~i~i~-~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~ 155 (265)
T cd03174 77 EKGIERALEAGVDEVRIF-DSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKAL 155 (265)
T ss_pred hhhHHHHHhCCcCEEEEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHH
Confidence 777888888898765443 32210 00 111123344444433211111 23455556776 8899988887777
Q ss_pred HHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEe--CCCCCCCCCCCCHHH
Q 011898 275 QKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQ--SRVGPVKWLKPYTDE 352 (475)
Q Consensus 275 ~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQ--Sr~Gp~~WL~P~t~d 352 (475)
.+.- .+ .+-+. +..|-.++.++.+..+.+.+.+ + +..+.|. ...| =.+..
T Consensus 156 ~~~g-----~~--~i~l~---------Dt~G~~~P~~v~~li~~l~~~~---~---~~~~~~H~Hn~~g------la~an 207 (265)
T cd03174 156 EEAG-----AD--EISLK---------DTVGLATPEEVAELVKALREAL---P---DVPLGLHTHNTLG------LAVAN 207 (265)
T ss_pred HHcC-----CC--EEEec---------hhcCCcCHHHHHHHHHHHHHhC---C---CCeEEEEeCCCCC------hHHHH
Confidence 6532 12 12211 2247778999999999998886 2 1344443 4343 23555
Q ss_pred HHHHhhhcCCceEE--EEcccccccchhh
Q 011898 353 VLVELGQKGVKSLL--AIPVSFVSEHIET 379 (475)
Q Consensus 353 ~L~~L~~~G~k~Vv--VvPigFvsDhlET 379 (475)
++..+ +.|++.|- +-++|=-+.+.-|
T Consensus 208 ~laA~-~aG~~~id~s~~G~G~~~Gn~~~ 235 (265)
T cd03174 208 SLAAL-EAGADRVDGSVNGLGERAGNAAT 235 (265)
T ss_pred HHHHH-HcCCCEEEeccccccccccCccH
Confidence 55555 45887776 4455656666653
No 62
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=57.71 E-value=43 Score=29.39 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=33.9
Q ss_pred HHHHHHHhhhcCCceEEEEcc-cccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCC--HHHHHHHHHHHHH
Q 011898 350 TDEVLVELGQKGVKSLLAIPV-SFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCT--PSFITDLADAVIE 421 (475)
Q Consensus 350 t~d~L~~L~~~G~k~VvVvPi-gFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNds--p~fI~aLadlV~e 421 (475)
+.+-+++++++|+|.||-.-+ +=-.+.- + ..+.++.++++|+ .|+.+|.-... +.-++.+++++.+
T Consensus 16 ~~~d~~~la~~GfktVInlRpd~E~~~qp-~----~~~~~~~a~~~Gl-~y~~iPv~~~~~~~~~v~~f~~~l~~ 84 (110)
T PF04273_consen 16 SPEDLAQLAAQGFKTVINLRPDGEEPGQP-S----SAEEAAAAEALGL-QYVHIPVDGGAITEEDVEAFADALES 84 (110)
T ss_dssp -HHHHHHHHHCT--EEEE-S-TTSTTT-T------HHCHHHHHHHCT--EEEE----TTT--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHCCCcEEEECCCCCCCCCCC-C----HHHHHHHHHHcCC-eEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 466889999999999886632 2111111 1 1124677889999 59999987654 3445555555443
No 63
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=57.23 E-value=1.2e+02 Score=30.23 Aligned_cols=196 Identities=14% Similarity=0.165 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHHhc
Q 011898 168 LRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDA 247 (475)
Q Consensus 168 L~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~~~ 247 (475)
-.+-|-+|.++|++ .++-|+.|.-+ +|+++..++.. .+ ..++.+.. + + ...
T Consensus 39 ~y~~~p~d~~~l~~------ADliv~~G~~l-E~~~~k~~~~~--~~-~~v~~~~~-~-------~---------~~~-- 89 (264)
T cd01020 39 DFEPTPTDAAKVST------ADIVVYNGGGY-DPWMTKLLADT--KD-VIVIAADL-D-------G---------HDD-- 89 (264)
T ss_pred cCCCCHHHHHHHhh------CCEEEEeCCCc-hHHHHHHHHhc--CC-ceEEeeec-c-------c---------ccC--
Confidence 33455567777663 47888888776 47787777665 22 22333221 1 0 000
Q ss_pred cCCCCCEEEeccCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccC
Q 011898 248 YLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRG 327 (475)
Q Consensus 248 ~~~~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g 327 (475)
.. ..=+++|-+|.....+++.|.++|.+.. |+.. .+.++|.+-|..++.+.-+.+.+.+..
T Consensus 90 -~~----~~dPH~Wldp~n~~~~a~~I~~~L~~~d-P~~~-----------~~y~~N~~~~~~~l~~l~~~~~~~~~~-- 150 (264)
T cd01020 90 -KE----GDNPHLWYDPETMSKVANALADALVKAD-PDNK-----------KYYQANAKKFVASLKPLAAKIAELSAK-- 150 (264)
T ss_pred -CC----CCCCceecCHhHHHHHHHHHHHHHHHhC-cccH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 01 1135678999999999999999998753 2210 112245566777777777777766632
Q ss_pred CCCCeEEEEe-------CCCCCCC----C--------CCCCH---HHHHHHhhhcCCceEEEEcccccccchhhHHHHHH
Q 011898 328 INNDHTLAYQ-------SRVGPVK----W--------LKPYT---DEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDM 385 (475)
Q Consensus 328 ~~~~~~lafQ-------Sr~Gp~~----W--------L~P~t---~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDi 385 (475)
+...--++|. .++|-.. + -+|+. .+.++.+.+.++ +++++-+.|-+.-.|+|
T Consensus 151 ~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v-~~if~e~~~~~k~~~~l----- 224 (264)
T cd01020 151 YKGAPVAATEPVFDYLLDALGMKERTPKGYTATTESETEPSPADIAAFQNAIKNRQI-DALIVNPQQASSATTNI----- 224 (264)
T ss_pred CCCCeEEEeCchHHHHHHHCCCcccCHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCC-CEEEeCCCCCcHHHHHH-----
Confidence 1111112221 1233211 1 12332 334444444555 46667777766666654
Q ss_pred HHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHH
Q 011898 386 EYKELALESGIENWGRVPALNCTPSFITDLADAV 419 (475)
Q Consensus 386 E~re~a~e~G~~~~~rvp~LNdsp~fI~aLadlV 419 (475)
.+++++.|+.-......+.....+++.|...+
T Consensus 225 --~~la~~~~~~v~~l~~~~~~~~~y~~~m~~n~ 256 (264)
T cd01020 225 --TGLAKRSGVPVVEVTETMPNGTTYLTWMLKQV 256 (264)
T ss_pred --HHHHHHcCCCEEeecCCCCCCCCHHHHHHHHH
Confidence 34577788864332222222245665554443
No 64
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=54.27 E-value=2.7e+02 Score=28.93 Aligned_cols=138 Identities=22% Similarity=0.201 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCC
Q 011898 264 EGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPV 343 (475)
Q Consensus 264 p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~ 343 (475)
..|++++...|...++.++. ..+.-|+-.-|.|.-. -+.++.+....|.+.+ ++....+++.-+.-+
T Consensus 30 ~~y~~~l~~Ei~~~~~~~~~-~~v~~i~~GGGtPs~l-------~~~~l~~ll~~i~~~~---~~~~~~eitie~np~-- 96 (360)
T TIGR00539 30 EEYTQALCQDLKHALSQTDQ-EPLESIFIGGGTPNTL-------SVEAFERLFESIYQHA---SLSDDCEITTEANPE-- 96 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CcccEEEeCCCchhcC-------CHHHHHHHHHHHHHhC---CCCCCCEEEEEeCCC--
Confidence 45899988888766554432 1233455544555211 1567777777777765 433345566655322
Q ss_pred CCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHH-----HHHHHHHHHHHHcCCceEEE---cCCCCCCHH-HHHH
Q 011898 344 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLE-----EIDMEYKELALESGIENWGR---VPALNCTPS-FITD 414 (475)
Q Consensus 344 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~-----EIDiE~re~a~e~G~~~~~r---vp~LNdsp~-fI~a 414 (475)
--+++.|+.|.+.|+.+|-+=-=+|-.+.+..+. +--.+.-+.+.+.|+.++.. .-.++.+.. |.+.
T Consensus 97 ----~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~ 172 (360)
T TIGR00539 97 ----LITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEE 172 (360)
T ss_pred ----CCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHH
Confidence 2357889999999988776655566555554442 22344556777889864432 344566654 4444
Q ss_pred HHHH
Q 011898 415 LADA 418 (475)
Q Consensus 415 Ladl 418 (475)
+..+
T Consensus 173 l~~~ 176 (360)
T TIGR00539 173 LKLA 176 (360)
T ss_pred HHHH
Confidence 4333
No 65
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=54.14 E-value=1.3e+02 Score=27.55 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=26.5
Q ss_pred HHHHHHHHHHh-cCCCceEE--EeeeccCCCHHHHHHHHH
Q 011898 175 QAQALKTALEA-KNLPVNVY--VGMRYWYPFTEEAVQQIK 211 (475)
Q Consensus 175 qa~~L~~~L~~-~~~~~~V~--~amrY~~P~iedal~~l~ 211 (475)
=|++|++.|++ .++++.|. -.|.+..|.+...+...-
T Consensus 4 aA~Al~eal~~~~~~~~~v~v~D~~~~~~p~~~~~~~~~Y 43 (169)
T PF06925_consen 4 AARALAEALERRRGPDAEVEVVDFLEEASPWLRRLIRKAY 43 (169)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEehHHhhChHHHHHHHHHH
Confidence 36788888877 45555555 588888998877776653
No 66
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=53.93 E-value=1.5e+02 Score=29.33 Aligned_cols=121 Identities=12% Similarity=0.196 Sum_probs=67.2
Q ss_pred HHHHHCCCCEEEEEecCCcccccChHH--HHHHHHHHHHHhccCCCCCEEEeccCCCChHHHHHHHHHHHHHHhhcCCCC
Q 011898 208 QQIKRDRITRLVVLPLYPQFSISTTGS--SIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPE 285 (475)
Q Consensus 208 ~~l~~~Gv~rIvvlPLyPqYS~sTtgS--~~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~ 285 (475)
-.+.++ .+-+.++.++|+...+...+ -.+.+.. ..+. -++|+..+..-.....|.+.+.+.+++. + -+
T Consensus 18 ~~a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~-qA~a---lgipl~~~~~~~~~e~~~e~l~~~l~~~----g-v~ 87 (223)
T TIGR00290 18 YHALKE-HEVISLVNIMPENEESYMFHGVNAHLTDL-QAES---IGIPLIKLYTEGTEEDEVEELKGILHTL----D-VE 87 (223)
T ss_pred HHHHHh-CeeEEEEEEecCCCCcccccccCHHHHHH-HHHH---cCCCeEEeecCCCccHHHHHHHHHHHHc----C-CC
Confidence 334444 56667778888753221111 1122222 2221 1355544444455677887777766553 1 11
Q ss_pred ceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceE
Q 011898 286 EVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSL 365 (475)
Q Consensus 286 ~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~V 365 (475)
+++ -||-+-.....=.+.+.+++ |+. .+.-= |-.+ .++.++++.+.|++-+
T Consensus 88 --~vv-------------~GdI~s~~qr~~~e~v~~~l---gl~-~~~PL---------W~~~-~~~ll~e~i~~G~~ai 138 (223)
T TIGR00290 88 --AVV-------------FGAIYSEYQKTRIERVCREL---GLK-SFAPL---------WHRD-PEKLMEEFVEEKFEAR 138 (223)
T ss_pred --EEE-------------ECCcccHHHHHHHHHHHHhc---CCE-Eeccc---------cCCC-HHHHHHHHHHcCCeEE
Confidence 222 37777655566667788887 662 11111 6444 5669999999999887
Q ss_pred EE
Q 011898 366 LA 367 (475)
Q Consensus 366 vV 367 (475)
++
T Consensus 139 Iv 140 (223)
T TIGR00290 139 II 140 (223)
T ss_pred EE
Confidence 74
No 67
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=53.58 E-value=23 Score=38.01 Aligned_cols=66 Identities=20% Similarity=0.368 Sum_probs=47.9
Q ss_pred CCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHH
Q 011898 344 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSF 411 (475)
Q Consensus 344 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp~f 411 (475)
.|.+|.=.-.|+.+.+.|++.|+..-.-+-.+-+=++.+| .+.++..+++|. ++..|++++-|+..
T Consensus 6 rw~gp~d~v~l~~irQ~G~~giV~al~~~p~gevW~~~~i-~~~k~~ie~~GL-~~~vvEs~pv~e~I 71 (394)
T TIGR00695 6 RWYGPNDPVSLEDVRQAGATGIVTALHHIPNGEVWEKEEI-RKRKEYIESAGL-HWSVVESVPVHEAI 71 (394)
T ss_pred eeeCCCCcchHHHHhhcCCcceeecCCCCCCCCCCCHHHH-HHHHHHHHHcCC-eEEEEeCCCccHHH
Confidence 5899977778888888999999965433323334445554 345677788998 59999999988754
No 68
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=51.61 E-value=4 Score=39.11 Aligned_cols=59 Identities=27% Similarity=0.554 Sum_probs=46.1
Q ss_pred CEEEeccCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHH
Q 011898 253 PVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECI 316 (475)
Q Consensus 253 ~v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~ 316 (475)
-++.+.+|.+++.+++.++..++++|..| +.+.=++-..|+|..-. ..|||..++.+.+
T Consensus 37 A~~L~~rY~~~~~Lv~~m~~LarEEL~HF---eqV~~im~~Rgi~l~~~--~~~~Ya~~L~k~v 95 (180)
T cd07910 37 AMSLIFRYPEKPELVEAMSDLAREELQHF---EQVLKIMKKRGIPLGPD--SKDPYASGLRKLV 95 (180)
T ss_pred HHHHHHHcCCcHhHHHHHHHHHHHHHHHH---HHHHHHHHHcCCCCCCC--CCCHHHHHHHHHc
Confidence 36788899999999999999999999877 34444567888887765 4689977665544
No 69
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.66 E-value=80 Score=34.42 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=29.3
Q ss_pred Ch-HHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcc
Q 011898 307 PY-RDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPV 370 (475)
Q Consensus 307 pY-~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPi 370 (475)
+| ..+..+.++.+.+.....-+..++-++| |. =++-+.+++++-+.+-+..++-++++
T Consensus 276 ~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGF-----Pg-ETeedFe~tl~lv~e~~fd~~~~F~Y 334 (437)
T COG0621 276 GYTVEEYLEIIEKLRAARPDIAISTDIIVGF-----PG-ETEEDFEETLDLVEEVRFDRLHVFKY 334 (437)
T ss_pred CcCHHHHHHHHHHHHHhCCCceEeccEEEEC-----CC-CCHHHHHHHHHHHHHhCCCEEeeeec
Confidence 46 4555555555555542111112222322 11 12445666666666667777777776
No 70
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=49.28 E-value=3.5e+02 Score=28.73 Aligned_cols=165 Identities=13% Similarity=0.174 Sum_probs=81.5
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhc---CCCceEEEeeeccCC--CHHHHHHHHHHCCCCEEEEEecCCccc-------c
Q 011898 162 IGGGSPLRKITDEQAQALKTALEAK---NLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLVVLPLYPQFS-------I 229 (475)
Q Consensus 162 IGggSPL~~~T~~qa~~L~~~L~~~---~~~~~V~~amrY~~P--~iedal~~l~~~Gv~rIvvlPLyPqYS-------~ 229 (475)
+|||.|..--.+.+.+.+. .+.+. .....+.+ . ++| ..++-++.|++.|++||-+=.+--.-. .
T Consensus 68 ~GGGTPs~l~~~~l~~ll~-~i~~~~~~~~~~eiti--E-~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~ 143 (390)
T PRK06582 68 FGGGTPSLMNPVIVEGIIN-KISNLAIIDNQTEITL--E-TNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRT 143 (390)
T ss_pred ECCCccccCCHHHHHHHHH-HHHHhCCCCCCCEEEE--E-eCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCC
Confidence 4999995544444433333 23221 11223333 2 244 457899999999999986544422111 1
Q ss_pred cChHHHHHHHHHHHHHhccCCCCCEEEeccCCCChHHHHHHHHHHHHHHhhcCCCCce--EEEEecCCCchhhhhccCC-
Q 011898 230 STTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEV--MIFFSAHGVPVSYVEKAGD- 306 (475)
Q Consensus 230 sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~--~LLFSaHglP~~~v~~~GD- 306 (475)
.+...+.+.+..+ ++ ...++.+.+|-..+... .+.|.+.++.+++-. ++.+ .-|-...|.|+.-.-.+|.
T Consensus 144 h~~~~~~~ai~~~-~~--~~~~v~~DlI~GlPgqt--~e~~~~~l~~~~~l~--p~his~y~L~i~~gT~l~~~~~~g~~ 216 (390)
T PRK06582 144 HDCMQAIKTIEAA-NT--IFPRVSFDLIYARSGQT--LKDWQEELKQAMQLA--TSHISLYQLTIEKGTPFYKLFKEGNL 216 (390)
T ss_pred CCHHHHHHHHHHH-HH--hCCcEEEEeecCCCCCC--HHHHHHHHHHHHhcC--CCEEEEecCEEccCChHHHHHhcCCC
Confidence 2222333333322 22 13455567776555432 345566666665432 3321 1122233555432212332
Q ss_pred --ChHHHHHHHHHHHHHHHhccCCCCCeEEEEeC
Q 011898 307 --PYRDQMEECIYLIMQRLKDRGINNDHTLAYQS 338 (475)
Q Consensus 307 --pY~~q~~~t~~~v~e~L~~~g~~~~~~lafQS 338 (475)
|-..+..+..+.+.+.|...|+ .+|+++--+
T Consensus 217 ~~p~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa 249 (390)
T PRK06582 217 ILPHSDAAAEMYEWTNHYLESKKY-FRYEISNYA 249 (390)
T ss_pred CCCChHHHHHHHHHHHHHHHHcCC-ceeeceeee
Confidence 2345556666777777776687 466654333
No 71
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=49.14 E-value=32 Score=35.44 Aligned_cols=18 Identities=39% Similarity=0.691 Sum_probs=14.4
Q ss_pred CCceEEEEecCCCchhhh
Q 011898 284 PEEVMIFFSAHGVPVSYV 301 (475)
Q Consensus 284 ~~~~~LLFSaHglP~~~v 301 (475)
|+...++|||||+|....
T Consensus 65 p~~~~VIfsAHGVs~~v~ 82 (294)
T COG0761 65 PDGATVIFSAHGVSPAVR 82 (294)
T ss_pred CCCCEEEEECCCCCHHHH
Confidence 455689999999998764
No 72
>PLN02591 tryptophan synthase
Probab=48.96 E-value=1.5e+02 Score=29.81 Aligned_cols=72 Identities=21% Similarity=0.250 Sum_probs=52.1
Q ss_pred eEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHH
Q 011898 332 HTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSF 411 (475)
Q Consensus 332 ~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp~f 411 (475)
+-++|-. ++++.-.++-++++++.|++-+++...-+ +| ..++.+.++++|+..+..+ +++.++.-
T Consensus 82 ilm~Y~N-----~i~~~G~~~F~~~~~~aGv~GviipDLP~--------ee-~~~~~~~~~~~gl~~I~lv-~Ptt~~~r 146 (250)
T PLN02591 82 VLFTYYN-----PILKRGIDKFMATIKEAGVHGLVVPDLPL--------EE-TEALRAEAAKNGIELVLLT-TPTTPTER 146 (250)
T ss_pred EEEeccc-----HHHHhHHHHHHHHHHHcCCCEEEeCCCCH--------HH-HHHHHHHHHHcCCeEEEEe-CCCCCHHH
Confidence 4556654 45567889999999999999999875543 22 3468888899999755444 57888877
Q ss_pred HHHHHHH
Q 011898 412 ITDLADA 418 (475)
Q Consensus 412 I~aLadl 418 (475)
++.+++.
T Consensus 147 i~~ia~~ 153 (250)
T PLN02591 147 MKAIAEA 153 (250)
T ss_pred HHHHHHh
Confidence 7777665
No 73
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=47.86 E-value=2.6e+02 Score=30.05 Aligned_cols=72 Identities=13% Similarity=0.196 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEeeec----cCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHH
Q 011898 170 KITDEQAQALKTALEAKNLPVNVYVGMRY----WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRE 245 (475)
Q Consensus 170 ~~T~~qa~~L~~~L~~~~~~~~V~~amrY----~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~ 245 (475)
.++++++..+-+.-=+.|.. -|..|+-| ++|++..||.+-.+ +++.+-.=+|-+---.....-+.+.+.+++
T Consensus 30 ~id~~~~~~~i~~aie~GiN-yidTA~~Yh~g~sE~~lgkaL~~~~R---ekv~LaTKlp~~~~~~~edm~r~fneqLek 105 (391)
T COG1453 30 SIDEENANETIDYAIEHGIN-YIDTAWPYHGGESEEFLGKALKDGYR---EKVKLATKLPSWPVKDREDMERIFNEQLEK 105 (391)
T ss_pred CccHHHHHHHHHHHHHcCCc-eEeecccccCCCchHHHHHHhhhccc---ceEEEEeecCCccccCHHHHHHHHHHHHHH
Confidence 34555555544432234543 35667766 56666666554332 344444446632222333333444455544
No 74
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=46.72 E-value=1.7e+02 Score=29.48 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=45.1
Q ss_pred CCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHH
Q 011898 347 KPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADA 418 (475)
Q Consensus 347 ~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp~fI~aLadl 418 (475)
.--+++-++++++.|++-++|.-..+ +| ..++.+.++++|+..+..+ ++|.++.-++.+++.
T Consensus 103 ~~G~e~f~~~~~~aGvdGviipDLp~--------ee-~~~~~~~~~~~gl~~I~lv-ap~t~~eri~~i~~~ 164 (258)
T PRK13111 103 QYGVERFAADAAEAGVDGLIIPDLPP--------EE-AEELRAAAKKHGLDLIFLV-APTTTDERLKKIASH 164 (258)
T ss_pred hcCHHHHHHHHHHcCCcEEEECCCCH--------HH-HHHHHHHHHHcCCcEEEEe-CCCCCHHHHHHHHHh
Confidence 44678899999999999998853332 22 3467888889999755434 688888888777665
No 75
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.73 E-value=85 Score=30.65 Aligned_cols=104 Identities=19% Similarity=0.178 Sum_probs=64.0
Q ss_pred CCCHHHHHHHhhhcCCceEEEEcccccccchhhH--HHHHHH-HHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHHc
Q 011898 347 KPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETL--EEIDME-YKELALESGIENWGRVPALNCTPSFITDLADAVIEAL 423 (475)
Q Consensus 347 ~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL--~EIDiE-~re~a~e~G~~~~~rvp~LNdsp~fI~aLadlV~e~l 423 (475)
.|....+|+.|.+.|.+-++ -|-.-+|--+ |++-.+ .++.+++.|+ +|.-.+. ++...|.+...+. |-.
T Consensus 13 APcs~y~le~l~~~~~~i~~----yFYNPNIhP~~EY~~R~~e~~~f~~~~~i-~~iegdY-~~~~~w~~~vKg~--E~E 84 (204)
T COG1636 13 APCSGYVLEKLRDSGIKITI----YFYNPNIHPLSEYELRKEEVKRFAEKFGI-NFIEGDY-EDLEKWFERVKGM--EDE 84 (204)
T ss_pred CCCcHHHHHHHHhcCcceEE----EEeCCCCCchHHHHHHHHHHHHHHHHcCC-eeeecCc-ccHHHHHHHhhcc--hhC
Confidence 58888899999888775433 3445555434 333333 3577889997 5766663 2566677655442 111
Q ss_pred CCccccCCCCCCCCCCCCChhHHHHHHHHHH----HHHHHHHhChh
Q 011898 424 PSALAMSAPKNISQEDDHNPVRYAIKMFFGS----ILAFVLFFSPR 465 (475)
Q Consensus 424 ~~~~~~~~~~~~~c~~c~~~~~~~~k~~~~~----~~~~~~~~~~~ 465 (475)
+....||.+|.+-|=..+.++=.. .+.-.|++||+
T Consensus 85 -------pE~G~RC~~Cfd~Rle~tA~~A~e~G~d~ftttL~iSp~ 123 (204)
T COG1636 85 -------PEGGKRCTMCFDMRLEKTAKKAKELGFDVFTTTLLISPK 123 (204)
T ss_pred -------CCCCchhHhHHHHHHHHHHHHHHHcCCchhhhheecCcc
Confidence 124569999999877766554222 23446788886
No 76
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=45.34 E-value=3.9e+02 Score=28.11 Aligned_cols=142 Identities=11% Similarity=0.087 Sum_probs=74.2
Q ss_pred hhccCCCCchHHHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEE-ecCCcccc----cChH
Q 011898 159 YAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVL-PLYPQFSI----STTG 233 (475)
Q Consensus 159 Y~~IGggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvl-PLyPqYS~----sTtg 233 (475)
...|.-|+|.....+ .+.++.. .+.+...+|....| ...+.++...+.|++.|.++ |..+.... .|..
T Consensus 36 v~~IEvG~p~~~~~~--~e~i~~i-~~~~~~~~v~~~~r----~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~ 108 (363)
T TIGR02090 36 VDVIEAGFPIASEGE--FEAIKKI-SQEGLNAEICSLAR----ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRD 108 (363)
T ss_pred CCEEEEeCCCCChHH--HHHHHHH-HhcCCCcEEEEEcc----cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHH
Confidence 344444577553332 3333332 22333344433223 23556788888899876553 55443221 1222
Q ss_pred HHHHHHHHHHHHhccC-CCCCEEEeccCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHH
Q 011898 234 SSIRVLQNIFREDAYL-SRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQM 312 (475)
Q Consensus 234 S~~~~l~~~~~~~~~~-~~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~ 312 (475)
-+++.+.+.++..+.. -.+.+...+.+..++.|+..+++.+.+. + .+ .+-+. +..|..+|.++
T Consensus 109 ~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~----g-~~--~i~l~---------DT~G~~~P~~v 172 (363)
T TIGR02090 109 EVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEA----G-AD--RINIA---------DTVGVLTPQKM 172 (363)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhC----C-CC--EEEEe---------CCCCccCHHHH
Confidence 2334444433321111 1245666677778888888777666542 1 12 22222 34577788888
Q ss_pred HHHHHHHHHHH
Q 011898 313 EECIYLIMQRL 323 (475)
Q Consensus 313 ~~t~~~v~e~L 323 (475)
.+.++.+.+.+
T Consensus 173 ~~li~~l~~~~ 183 (363)
T TIGR02090 173 EELIKKLKENV 183 (363)
T ss_pred HHHHHHHhccc
Confidence 88888887765
No 77
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=44.35 E-value=3.3e+02 Score=27.06 Aligned_cols=155 Identities=9% Similarity=0.053 Sum_probs=84.4
Q ss_pred eccCCCHHHHHHHHHHCCCCEEEEE-ecCCccc----ccChHHHHHHHHHHHHHhccCCCCCEEEe--ccCCCChHHHHH
Q 011898 197 RYWYPFTEEAVQQIKRDRITRLVVL-PLYPQFS----ISTTGSSIRVLQNIFREDAYLSRLPVSII--RSWYQREGYVNS 269 (475)
Q Consensus 197 rY~~P~iedal~~l~~~Gv~rIvvl-PLyPqYS----~sTtgS~~~~l~~~~~~~~~~~~~~v~~I--~~~~~~p~yI~a 269 (475)
|.....++.+++.....|++.|-++ |+.+... ..|....++.+.+.++..+.. ++.+.+. .....++.|+..
T Consensus 69 r~~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~-G~~v~~~~~~~~~~~~~~~~~ 147 (268)
T cd07940 69 RAVKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSH-GLDVEFSAEDATRTDLDFLIE 147 (268)
T ss_pred cCCHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCeEEEeeecCCCCCHHHHHH
Confidence 4444444444433322338877765 5555432 123333445555544432211 2344443 444467888887
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEe--CCCCCCCCCC
Q 011898 270 MADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQ--SRVGPVKWLK 347 (475)
Q Consensus 270 la~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQ--Sr~Gp~~WL~ 347 (475)
+++.+.++ + .+. |-+ .+.-|--++.++.+.++.+.+.+ +-. +..+.|. ...|
T Consensus 148 ~~~~~~~~----G-~~~--i~l---------~DT~G~~~P~~v~~lv~~l~~~~---~~~-~i~l~~H~Hn~~G------ 201 (268)
T cd07940 148 VVEAAIEA----G-ATT--INI---------PDTVGYLTPEEFGELIKKLKENV---PNI-KVPISVHCHNDLG------ 201 (268)
T ss_pred HHHHHHHc----C-CCE--EEE---------CCCCCCCCHHHHHHHHHHHHHhC---CCC-ceeEEEEecCCcc------
Confidence 77776553 1 222 211 23457778999999999999887 200 2445554 4444
Q ss_pred CCHHHHHHHhhhcCCceEE--EEcccccccchhh
Q 011898 348 PYTDEVLVELGQKGVKSLL--AIPVSFVSEHIET 379 (475)
Q Consensus 348 P~t~d~L~~L~~~G~k~Vv--VvPigFvsDhlET 379 (475)
=.+..++..+ +.|++.|. +.++|=-+.|.-|
T Consensus 202 lA~An~laAi-~aG~~~iD~s~~GlG~~aGN~~t 234 (268)
T cd07940 202 LAVANSLAAV-EAGARQVECTINGIGERAGNAAL 234 (268)
T ss_pred hHHHHHHHHH-HhCCCEEEEEeeccccccccccH
Confidence 3456666665 45988876 4566666677654
No 78
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=43.89 E-value=65 Score=29.79 Aligned_cols=63 Identities=24% Similarity=0.239 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHhhhcCCceEEEEccccccc--chhhHHHHHHHHHHHHHHcCCceEEEcCCCC
Q 011898 344 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSE--HIETLEEIDMEYKELALESGIENWGRVPALN 406 (475)
Q Consensus 344 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsD--hlETL~EIDiE~re~a~e~G~~~~~rvp~LN 406 (475)
+|+.|.+.++|++|.++|++=|+|--=+=+.- ..+++.++-.....++++.|+.-..++++-+
T Consensus 28 ~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~~~~a~~~ 92 (159)
T PF08645_consen 28 KFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQVYAAPHK 92 (159)
T ss_dssp EEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EEEEECGCS
T ss_pred hhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceEEEecCCC
Confidence 46788999999999999975555544444444 3456677766777888889997655665554
No 79
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=43.86 E-value=84 Score=36.38 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=70.0
Q ss_pred CCcEEEEEEccCCCCCcCcHHHHHHhhcCCCCcc-cCChhhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHH
Q 011898 97 EDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDII-RLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (475)
Q Consensus 97 ~~k~aVLLlNlG~P~s~~dV~~FL~~~l~D~~Vi-~lP~~~~~~~~~L~~~Ia~~R~~k~~~~Y~~IGggSPL~~~T~~q 175 (475)
+++.-|+|.++|++. -+-=..|..+||.+..+- ..+..+ .....++.-.+ .+....|+ -|-+...+..+
T Consensus 580 g~rpkV~LatlG~d~-H~~ra~fv~~~l~~~GfeV~~~~~~----~s~e~~v~aa~----~~~a~ivv-lcs~d~~~~e~ 649 (714)
T PRK09426 580 GRRPRILVAKMGQDG-HDRGAKVIATAFADLGFDVDIGPLF----QTPEEAARQAV----ENDVHVVG-VSSLAAGHKTL 649 (714)
T ss_pred CCCceEEEEecCCcc-hhHhHHHHHHHHHhCCeeEecCCCC----CCHHHHHHHHH----HcCCCEEE-EeccchhhHHH
Confidence 445579999999974 444567999999988541 223111 12233333321 12233333 36677777778
Q ss_pred HHHHHHHHHhcCC-CceEEEeeeccCCCHHHHHHHHHHCCCCEEE
Q 011898 176 AQALKTALEAKNL-PVNVYVGMRYWYPFTEEAVQQIKRDRITRLV 219 (475)
Q Consensus 176 a~~L~~~L~~~~~-~~~V~~amrY~~P~iedal~~l~~~Gv~rIv 219 (475)
+..+.+.|++.|. ++.|.+| +.|.-++ .+.+++.|+|.++
T Consensus 650 ~~~l~~~Lk~~G~~~v~vl~G---G~~~~~~-~~~l~~aGvD~~i 690 (714)
T PRK09426 650 VPALIEALKKLGREDIMVVVG---GVIPPQD-YDFLYEAGVAAIF 690 (714)
T ss_pred HHHHHHHHHhcCCCCcEEEEe---CCCChhh-HHHHHhCCCCEEE
Confidence 9999999999875 4778888 7754333 3778889999765
No 80
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=43.62 E-value=4.9e+02 Score=28.73 Aligned_cols=161 Identities=14% Similarity=0.172 Sum_probs=74.6
Q ss_pred cCCCCchH---HHHHHHHHHHHHHHHhcCCCceEEEeeeccCC--CHHHHHHHHHHCCCCEEEEEecCCcccccChH---
Q 011898 162 IGGGSPLR---KITDEQAQALKTALEAKNLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLVVLPLYPQFSISTTG--- 233 (475)
Q Consensus 162 IGggSPL~---~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P--~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtg--- 233 (475)
+|||+|.. ..-.+..+.+.+.+. +......+-+.-++| ..++.++.|++.|+++|-+ =||-..-.+-
T Consensus 224 fGGGTPt~L~~~~L~~Ll~~i~~~f~--~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISI---GvQS~~d~vLk~i 298 (488)
T PRK08207 224 FGGGTPTSLTAEELERLLEEIYENFP--DVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISI---NPQTMNDETLKAI 298 (488)
T ss_pred EeCCCccCCCHHHHHHHHHHHHHhcc--ccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEE---cCCcCCHHHHHHh
Confidence 38999964 333333333333221 111112344444555 3678999999999998654 4443221111
Q ss_pred ---HHHHHHHHHHHHhc--cCCCCCEEEeccCCCChHHHHHHHHHHHHHHhhcCCCCc--eEEEEecCCCchhhhhccC-
Q 011898 234 ---SSIRVLQNIFREDA--YLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEE--VMIFFSAHGVPVSYVEKAG- 305 (475)
Q Consensus 234 ---S~~~~l~~~~~~~~--~~~~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~--~~LLFSaHglP~~~v~~~G- 305 (475)
...+++.++++..+ ..+.+.+.+|-.++.+. .+-+.+.++...+ + .++. +..|-...|.|+..-....
T Consensus 299 gR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt--~ed~~~tl~~l~~-L-~pd~isv~~L~i~~gT~l~~~~~~~~ 374 (488)
T PRK08207 299 GRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEG--LEEVKHTLEEIEK-L-NPESLTVHTLAIKRASRLTENKEKYK 374 (488)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCC--HHHHHHHHHHHHh-c-CcCEEEEEeceEcCCChHHHhcCcCC
Confidence 11223333332211 12233356665554322 2333344444332 2 2332 2333344555554211111
Q ss_pred CChHHHHHHHHHHHHHHHhccCCCCCe
Q 011898 306 DPYRDQMEECIYLIMQRLKDRGINNDH 332 (475)
Q Consensus 306 DpY~~q~~~t~~~v~e~L~~~g~~~~~ 332 (475)
-|-..+..+..+...+.|...|+ .+|
T Consensus 375 ~~~~~~~~~m~~~a~~~l~~~Gy-~~Y 400 (488)
T PRK08207 375 VADREEIEKMMEEAEEWAKELGY-VPY 400 (488)
T ss_pred CcCHHHHHHHHHHHHHHHHHcCC-Hhh
Confidence 23356666777777777766677 355
No 81
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=43.23 E-value=86 Score=28.95 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=23.5
Q ss_pred hhcCCceEEEEcccccccchhh---HHHHHHHHHHHHHHcCCceEEEcC
Q 011898 358 GQKGVKSLLAIPVSFVSEHIET---LEEIDMEYKELALESGIENWGRVP 403 (475)
Q Consensus 358 ~~~G~k~VvVvPigFvsDhlET---L~EIDiE~re~a~e~G~~~~~rvp 403 (475)
.+-|.++|++.|++=.|+.+.. =.++=.+..+...+.|+ ++.|+|
T Consensus 68 ~kv~~~~ivlyPyAHLSs~La~P~~A~~iL~~le~~L~~~g~-eV~raP 115 (138)
T PF08915_consen 68 KKVKAKRIVLYPYAHLSSSLASPDVAVEILKKLEERLKSRGF-EVYRAP 115 (138)
T ss_dssp HHTT-SEEEEEE-GGGSSSB--HHHHHHHHHHHHHHHHHTT--EEEE--
T ss_pred HhcCCCEEEEeCcccccCCcCChHHHHHHHHHHHHHHHhCCC-eEEEeC
Confidence 3447889999999999988743 11221222233346777 577887
No 82
>TIGR03856 F420_MSMEG_2906 probable F420-dependent oxidoreductase, MSMEG_2906 family. This model describes a small family of enzymes in the bacterial luciferase-like monooxygenase family, which includes F420-dependent enzymes such as N5,N10-methylenetetrahydromethanopterin reductase as well as FMN-dependent enzymes. All members of this family are from species that produce coenzyme F420; SIMBAL analysis suggests that members of this family bind F420 rather than FMN.
Probab=42.90 E-value=1.6e+02 Score=29.23 Aligned_cols=85 Identities=13% Similarity=0.091 Sum_probs=52.3
Q ss_pred eEEEEecCCCc--hhhhhccCCCh-----HHHHHHHHHHHHHHHhccCCC-CCeEEEEeCCCCCCCCCCCCHHHHHHHhh
Q 011898 287 VMIFFSAHGVP--VSYVEKAGDPY-----RDQMEECIYLIMQRLKDRGIN-NDHTLAYQSRVGPVKWLKPYTDEVLVELG 358 (475)
Q Consensus 287 ~~LLFSaHglP--~~~v~~~GDpY-----~~q~~~t~~~v~e~L~~~g~~-~~~~lafQSr~Gp~~WL~P~t~d~L~~L~ 358 (475)
.-|.+.++|-+ ++..-..||.+ +.+..+....+.+...+.|-+ ..+++.++. |. .+.++.+.
T Consensus 151 ~PI~vgg~g~~~~l~~aar~aDg~~~~~~~~~~~~~~~~l~~~a~~~Grd~~~i~~~~~~---------~~-~~~~~~~~ 220 (249)
T TIGR03856 151 IPILIGGGGEKKTLPLVARHADIWHSFLDIETYRRKSQILDRHCADVGRDPATIERSVSW---------PG-LDSADAYV 220 (249)
T ss_pred CCEEEEcCCCchHHHHHHHHCCCccCCCCHHHHHHHHHHHHHHHHHcCCChhHeEEEecC---------CC-HHHHHHHH
Confidence 45778888865 34333345554 355556666665555444643 346666633 22 68889999
Q ss_pred hcCCceEEEEcccccccchhhHHH
Q 011898 359 QKGVKSLLAIPVSFVSEHIETLEE 382 (475)
Q Consensus 359 ~~G~k~VvVvPigFvsDhlETL~E 382 (475)
+.|+..+++-+....-| +++|.+
T Consensus 221 ~~G~~~~~~~~~~~~~~-~~~~~~ 243 (249)
T TIGR03856 221 AAGVTLFTVGIGGPDYD-LTAVEE 243 (249)
T ss_pred HcCCcEEEEeCCCCcCC-hHHHHH
Confidence 99999999966554434 565544
No 83
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=42.27 E-value=4.5e+02 Score=27.95 Aligned_cols=164 Identities=12% Similarity=0.216 Sum_probs=74.2
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhc-CCCceEEEeeeccCC--CHHHHHHHHHHCCCCEEEEEecCCccc-------ccC
Q 011898 162 IGGGSPLRKITDEQAQALKTALEAK-NLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLVVLPLYPQFS-------IST 231 (475)
Q Consensus 162 IGggSPL~~~T~~qa~~L~~~L~~~-~~~~~V~~amrY~~P--~iedal~~l~~~Gv~rIvvlPLyPqYS-------~sT 231 (475)
+|||.|-.--.+...+ |-+.+.+. +......+.+. .+| ...+-++.|++.|++||-+=..--.-. ..|
T Consensus 72 ~GGGTps~l~~~~l~~-ll~~i~~~~~~~~~~eit~E-~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~ 149 (400)
T PRK07379 72 FGGGTPSLLSVEQLER-ILTTLDQRFGIAPDAEISLE-IDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHR 149 (400)
T ss_pred ECCCccccCCHHHHHH-HHHHHHHhCCCCCCCEEEEE-eCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCC
Confidence 4999997543322222 22233221 21222334443 344 356789999999999887655422111 112
Q ss_pred hHHHHHHHHHHHHHhccCCCCCEEEeccCCCChHHHHHHHHHHHHHHhhcCCCCceE--EEEecCCCchhhhhccCC---
Q 011898 232 TGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVM--IFFSAHGVPVSYVEKAGD--- 306 (475)
Q Consensus 232 tgS~~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~--LLFSaHglP~~~v~~~GD--- 306 (475)
...+.+.+.. +++.+ .+.+.+.+|-.++.. =.+-|.+.++.+++ . .++.+. -|-..-|+|+.-...+|.
T Consensus 150 ~~~~~~ai~~-l~~~G-~~~v~~dlI~GlPgq--t~e~~~~tl~~~~~-l-~p~~is~y~L~~~pgT~l~~~~~~g~~~~ 223 (400)
T PRK07379 150 VKDIFAAVDL-IHQAG-IENFSLDLISGLPHQ--TLEDWQASLEAAIA-L-NPTHLSCYDLVLEPGTAFGKQYQPGKAPL 223 (400)
T ss_pred HHHHHHHHHH-HHHcC-CCeEEEEeecCCCCC--CHHHHHHHHHHHHc-C-CCCEEEEecceecCCchhHHHhhcCCCCC
Confidence 2222222222 22221 223445666555432 12233444444443 2 233211 112233455432212232
Q ss_pred ChHHHHHHHHHHHHHHHhccCCCCCeEE
Q 011898 307 PYRDQMEECIYLIMQRLKDRGINNDHTL 334 (475)
Q Consensus 307 pY~~q~~~t~~~v~e~L~~~g~~~~~~l 334 (475)
|-.++..+..+.+.+.|...|+ .+|++
T Consensus 224 ~~~~~~~~~~~~~~~~L~~~Gy-~~yei 250 (400)
T PRK07379 224 PSDETTAAMYRLAQEILTQAGY-EHYEI 250 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHcCC-ceeee
Confidence 3345555666667777776676 34444
No 84
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=42.16 E-value=28 Score=34.13 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=36.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCC
Q 011898 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 225 (475)
Q Consensus 163 GggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyP 225 (475)
|-||-++.+|++--..|-+ | ++.|.||.-+++|++.|++.|+++.=|.
T Consensus 9 G~gsR~~plT~~tpK~Llk----------V-----~g~plIErqI~~L~e~gI~dI~IVvGYl 56 (231)
T COG4750 9 GLGSRFVPLTQSTPKSLLK----------V-----NGEPLIERQIEQLREAGIDDITIVVGYL 56 (231)
T ss_pred ccccccccccccCChHHHH----------h-----cCcccHHHHHHHHHHCCCceEEEEeeeh
Confidence 5567777666554443321 1 5899999999999999999999998776
No 85
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=40.50 E-value=1.2e+02 Score=29.50 Aligned_cols=44 Identities=9% Similarity=0.037 Sum_probs=30.8
Q ss_pred HHHHHhcCCCceEEE--eee--ccCCCHHHHHHHHHHCCCCEEEEEec
Q 011898 180 KTALEAKNLPVNVYV--GMR--YWYPFTEEAVQQIKRDRITRLVVLPL 223 (475)
Q Consensus 180 ~~~L~~~~~~~~V~~--amr--Y~~P~iedal~~l~~~Gv~rIvvlPL 223 (475)
.+...+.|..+.+.+ +++ +...++.+.++++.+.|++.|.+...
T Consensus 121 i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt 168 (265)
T cd03174 121 IEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT 168 (265)
T ss_pred HHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh
Confidence 334445565444444 567 77778888999999999998886655
No 86
>PRK05660 HemN family oxidoreductase; Provisional
Probab=39.89 E-value=4.7e+02 Score=27.51 Aligned_cols=117 Identities=20% Similarity=0.295 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCC
Q 011898 264 EGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPV 343 (475)
Q Consensus 264 p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~ 343 (475)
..|++++.+.|+..+.... ...+.-||-.-|.|.-. -..++.+..+.+.+.+ ++....+++.-+.-+
T Consensus 37 ~~Y~~~l~~Ei~~~~~~~~-~~~v~ti~~GGGtPs~l-------~~~~l~~ll~~l~~~~---~~~~~~eit~e~np~-- 103 (378)
T PRK05660 37 DEYVDHLLADLDADLPLVQ-GREVHSIFIGGGTPSLF-------SAEAIQRLLDGVRARL---PFAPDAEITMEANPG-- 103 (378)
T ss_pred HHHHHHHHHHHHHHhHhcc-CCceeEEEeCCCccccC-------CHHHHHHHHHHHHHhC---CCCCCcEEEEEeCcC--
Confidence 4488888888875443221 12344556655666321 1466677777777665 433334566655322
Q ss_pred CCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhH-----HHHHHHHHHHHHHcCCc
Q 011898 344 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETL-----EEIDMEYKELALESGIE 397 (475)
Q Consensus 344 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL-----~EIDiE~re~a~e~G~~ 397 (475)
--+.+.|+.|.+.|+.+|-+=.=+|-.+.+..+ .+--++.-+.+.+.|+.
T Consensus 104 ----~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~ 158 (378)
T PRK05660 104 ----TVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLR 158 (378)
T ss_pred ----cCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 234578888888888777665556655555433 22234455667788875
No 87
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=39.66 E-value=5.2e+02 Score=27.93 Aligned_cols=142 Identities=18% Similarity=0.184 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCC
Q 011898 264 EGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPV 343 (475)
Q Consensus 264 p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~ 343 (475)
..|++++.+.|+...+.++....+.-|+-.=|.|.-. -+.++.+.++.|.+.. ++....+++.-+..+
T Consensus 81 ~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l-------~~~~l~~ll~~i~~~~---~~~~~~e~tie~~p~-- 148 (453)
T PRK13347 81 EAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTIL-------NPDQFERLMAALRDAF---DFAPEAEIAVEIDPR-- 148 (453)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccC-------CHHHHHHHHHHHHHhC---CCCCCceEEEEeccc--
Confidence 3578888887775544443212233344333444211 1577788888887775 443334444444221
Q ss_pred CCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHHH-----HHHHHHHHHHHcCCc--eEE-EcCCCCCCHHHHHHH
Q 011898 344 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEE-----IDMEYKELALESGIE--NWG-RVPALNCTPSFITDL 415 (475)
Q Consensus 344 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~E-----IDiE~re~a~e~G~~--~~~-rvp~LNdsp~fI~aL 415 (475)
--+++.|+.|.+.|+.+|-+=-=+|-.+.++.+.. --.+.-+.+.+.|+. ++. ..-.++.+..=+...
T Consensus 149 ----~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~t 224 (453)
T PRK13347 149 ----TVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRET 224 (453)
T ss_pred ----cCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHH
Confidence 23678999999989877766444555444443311 123445667788885 222 234456666544444
Q ss_pred HHHHHH
Q 011898 416 ADAVIE 421 (475)
Q Consensus 416 adlV~e 421 (475)
.+.+.+
T Consensus 225 l~~~~~ 230 (453)
T PRK13347 225 LDKVIA 230 (453)
T ss_pred HHHHHh
Confidence 344433
No 88
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.53 E-value=2.3e+02 Score=28.76 Aligned_cols=68 Identities=22% Similarity=0.244 Sum_probs=42.5
Q ss_pred CCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCc----eEEEcCCCCCCHHHHHHHHHHHHHHc
Q 011898 348 PYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIE----NWGRVPALNCTPSFITDLADAVIEAL 423 (475)
Q Consensus 348 P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~----~~~rvp~LNdsp~fI~aLadlV~e~l 423 (475)
|+-.+.+++|.++|+|=++.+-|..-.|.-+..| ++.++..|+. ....+. =.+|++.+..-+.+.+.+
T Consensus 74 Pdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y------~~~~~~~~~~~~~~~~~~~D--~tnp~a~~~w~~~~~~~~ 145 (292)
T cd06595 74 PDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQY------PEMAKALGVDPATEGPILFD--LTNPKFMDAYFDNVHRPL 145 (292)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHH------HHHHHhcCCCcccCCeEEec--CCCHHHHHHHHHHHHHHH
Confidence 8999999999999998888887765344433333 3344444432 122222 247888887766655543
No 89
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.09 E-value=2.1e+02 Score=28.24 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=38.2
Q ss_pred CHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHH
Q 011898 349 YTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADA 418 (475)
Q Consensus 349 ~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp~fI~aLadl 418 (475)
..++.++++.+.|+..|++.- -++|+.+|+ .+..+.++++|++-...+ .++.++.-++.+++.
T Consensus 89 ~~~~~i~~~~~~Gadgvii~d-----lp~e~~~~~-~~~~~~~~~~Gl~~~~~v-~p~T~~e~l~~~~~~ 151 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPD-----LLIDYPDDL-EKYVEIIKNKGLKPVFFT-SPKFPDLLIHRLSKL 151 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECC-----CCCCcHHHH-HHHHHHHHHcCCCEEEEE-CCCCCHHHHHHHHHh
Confidence 556678888888998887731 124544444 246677789998644333 455555555554443
No 90
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=38.54 E-value=4.8e+02 Score=27.22 Aligned_cols=140 Identities=16% Similarity=0.190 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCC
Q 011898 264 EGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPV 343 (475)
Q Consensus 264 p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~ 343 (475)
..|++++.+.|+. +...+. ..+.-|+-.-|.|.- ..+.++.+..+.+.+.+ ++....+++..++.+
T Consensus 31 ~~y~~~l~~Ei~~-~~~~~~-~~i~~i~~gGGtpt~-------l~~~~l~~ll~~i~~~~---~~~~~~eit~e~~p~-- 96 (377)
T PRK08599 31 DEYLDALIKEMNT-YAIRPF-DKLKTIYIGGGTPTA-------LSAEQLERLLTAIHRNL---PLSGLEEFTFEANPG-- 96 (377)
T ss_pred HHHHHHHHHHHHH-hhhcCC-CceeEEEeCCCCccc-------CCHHHHHHHHHHHHHhC---CCCCCCEEEEEeCCC--
Confidence 4588888888843 433321 122223433355421 12577888888887776 443233555555332
Q ss_pred CCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHH-----HHHHHHHHHHHHcCCceE---EEcCCCCCCHHHHHHH
Q 011898 344 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLE-----EIDMEYKELALESGIENW---GRVPALNCTPSFITDL 415 (475)
Q Consensus 344 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~-----EIDiE~re~a~e~G~~~~---~rvp~LNdsp~fI~aL 415 (475)
--+++.++.|++.|+.+|-+=.=+|-.+.++.+. +--.+.-+.+.+.|+.++ ..+-.++.+..=++..
T Consensus 97 ----~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~ 172 (377)
T PRK08599 97 ----DLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKES 172 (377)
T ss_pred ----CCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHH
Confidence 2357888999988988766644466555554432 122344566778887532 2245567776655555
Q ss_pred HHHHHH
Q 011898 416 ADAVIE 421 (475)
Q Consensus 416 adlV~e 421 (475)
.+.+.+
T Consensus 173 l~~~~~ 178 (377)
T PRK08599 173 LAKALA 178 (377)
T ss_pred HHHHHc
Confidence 555544
No 91
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=38.35 E-value=4.4e+02 Score=26.66 Aligned_cols=206 Identities=18% Similarity=0.240 Sum_probs=103.5
Q ss_pred EEEEEEccCCCCCcCcHHHHHHhhc-CCCCcccC--ChhhhhhhhHHH--HHHHhccChhhHHhhhccCCCCchHHHHHH
Q 011898 100 VGVLLLNLGGPDTLHDVQPFLFNLF-ADPDIIRL--PRLFRFLQWPLA--KLISVVRAPKSKEGYAAIGGGSPLRKITDE 174 (475)
Q Consensus 100 ~aVLLlNlG~P~s~~dV~~FL~~~l-~D~~Vi~l--P~~~~~~~~~L~--~~Ia~~R~~k~~~~Y~~IGggSPL~~~T~~ 174 (475)
-=|.-+..|-|+. +.-.+++..+- .+-++++| | +-.|++ +.|.. ...+.+.+|--+...- +
T Consensus 16 ali~yi~aG~P~~-~~~~~~~~~l~~~Gad~iElGiP-----fSDP~aDGpvIq~-------a~~rAL~~g~~~~~~~-~ 81 (263)
T CHL00200 16 ALIPFITAGDPDI-VITKKALKILDKKGADIIELGIP-----YSDPLADGPIIQE-------ASNRALKQGINLNKIL-S 81 (263)
T ss_pred cEEEEEeCCCCCH-HHHHHHHHHHHHCCCCEEEECCC-----CCCCCccCHHHHH-------HHHHHHHcCCCHHHHH-H
Confidence 3455667777752 33333444442 34577775 5 345554 34432 2333343332222222 2
Q ss_pred HHHHHHHHHHhcCCCceEEEeeeccCC----CHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHHhccCC
Q 011898 175 QAQALKTALEAKNLPVNVYVGMRYWYP----FTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLS 250 (475)
Q Consensus 175 qa~~L~~~L~~~~~~~~V~~amrY~~P----~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~ 250 (475)
+.+++ ++. .+.++ +-|.|++| .++.-++++++.|++-+++ |=.|. .. .+++.+.+++.+..
T Consensus 82 ~~~~~----r~~-~~~p~-vlm~Y~N~i~~~G~e~F~~~~~~aGvdgvii-pDLP~------ee-~~~~~~~~~~~gi~- 146 (263)
T CHL00200 82 ILSEV----NGE-IKAPI-VIFTYYNPVLHYGINKFIKKISQAGVKGLII-PDLPY------EE-SDYLISVCNLYNIE- 146 (263)
T ss_pred HHHHH----hcC-CCCCE-EEEecccHHHHhCHHHHHHHHHHcCCeEEEe-cCCCH------HH-HHHHHHHHHHcCCC-
Confidence 22333 222 34554 48999999 4556678889999987655 44452 11 12333444443211
Q ss_pred CCCEEEeccCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCC
Q 011898 251 RLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINN 330 (475)
Q Consensus 251 ~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~ 330 (475)
.+-++.+= +.+.-++.+++.. +...++.|--|+ ....+....++.+..+.+.+.. + .
T Consensus 147 --~I~lv~Pt-T~~eri~~i~~~a----------~gFIY~vS~~Gv-----TG~~~~~~~~~~~~i~~ir~~t---~--~ 203 (263)
T CHL00200 147 --LILLIAPT-SSKSRIQKIARAA----------PGCIYLVSTTGV-----TGLKTELDKKLKKLIETIKKMT---N--K 203 (263)
T ss_pred --EEEEECCC-CCHHHHHHHHHhC----------CCcEEEEcCCCC-----CCCCccccHHHHHHHHHHHHhc---C--C
Confidence 24555543 3344444333221 223455564333 1112344566777777776653 2 3
Q ss_pred CeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEE
Q 011898 331 DHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLA 367 (475)
Q Consensus 331 ~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvV 367 (475)
++.+.| |=++.+.++++.+.|..-|+|
T Consensus 204 Pi~vGF----------GI~~~e~~~~~~~~GADGvVV 230 (263)
T CHL00200 204 PIILGF----------GISTSEQIKQIKGWNINGIVI 230 (263)
T ss_pred CEEEEC----------CcCCHHHHHHHHhcCCCEEEE
Confidence 566654 345667777777777766555
No 92
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=38.34 E-value=50 Score=28.89 Aligned_cols=38 Identities=32% Similarity=0.314 Sum_probs=27.2
Q ss_pred CHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCc
Q 011898 349 YTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIE 397 (475)
Q Consensus 349 ~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~ 397 (475)
.+.+.++++.+.|++.+++.|= +.+.|..+.++++|+.
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~g-----------~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQPG-----------AESEELIEAAREAGIR 104 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-TT-----------S--HHHHHHHHHTT-E
T ss_pred HHHHHHHHHHHcCCCEEEEEcc-----------hHHHHHHHHHHHcCCE
Confidence 6788999999999999988885 3455678888888874
No 93
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=37.95 E-value=4.9e+02 Score=27.11 Aligned_cols=169 Identities=20% Similarity=0.286 Sum_probs=75.6
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCCceEEEeeeccCC--CHHHHHHHHHHCCCCEEEEEecCCcc------c-ccCh
Q 011898 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLVVLPLYPQF------S-ISTT 232 (475)
Q Consensus 162 IGggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P--~iedal~~l~~~Gv~rIvvlPLyPqY------S-~sTt 232 (475)
+|||.|..-.. .+.+.|.+.+.+......+.+.+. .+| ..++.++.|++.|+++|-+=..--.- - ..|.
T Consensus 57 ~gGGtps~l~~-~~l~~L~~~i~~~~~~~~~eitie-~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~ 134 (374)
T PRK05799 57 IGGGTPTYLSL-EALEILKETIKKLNKKEDLEFTVE-GNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTF 134 (374)
T ss_pred ECCCcccCCCH-HHHHHHHHHHHhCCCCCCCEEEEE-eCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCH
Confidence 58998875222 233344444433222222333332 344 66789999999999986332211100 0 1122
Q ss_pred HHHHHHHHHHHHHhccCCCCCEEEeccCCCChHHHHHHHHHHHHHHhhcCCCCce--EEEEecCCCchhhhhccCC---C
Q 011898 233 GSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEV--MIFFSAHGVPVSYVEKAGD---P 307 (475)
Q Consensus 233 gS~~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~--~LLFSaHglP~~~v~~~GD---p 307 (475)
..+.+.+.. +++.+ .+.+.+.+|-.+..+. .+.+.+.++...+ .+ ++.+ .-+...-|+|..-.-.+|. |
T Consensus 135 ~~~~~ai~~-l~~~g-~~~v~~dli~GlPgqt--~e~~~~~l~~~~~-l~-~~~is~y~l~~~pgT~l~~~~~~g~~~~~ 208 (374)
T PRK05799 135 EEFLENYKL-ARKLG-FNNINVDLMFGLPNQT--LEDWKETLEKVVE-LN-PEHISCYSLIIEEGTPFYNLYENGKLKLP 208 (374)
T ss_pred HHHHHHHHH-HHHcC-CCcEEEEeecCCCCCC--HHHHHHHHHHHHh-cC-CCEEEEeccEecCCCHHHHHHhcCCCCCC
Confidence 222222222 22221 2234456665543221 2333334443332 21 2321 1122355666532212231 3
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCeEEEEeCC
Q 011898 308 YRDQMEECIYLIMQRLKDRGINNDHTLAYQSR 339 (475)
Q Consensus 308 Y~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr 339 (475)
-..+..++.+...+.|.+.|+ .+|++..-+|
T Consensus 209 ~~~~~~~~~~~~~~~l~~~Gy-~~ye~~~fa~ 239 (374)
T PRK05799 209 DEEEEREMYHYTIEFLKEKGY-HQYEISNFAK 239 (374)
T ss_pred ChHHHHHHHHHHHHHHHHcCC-cEEeeeeeEC
Confidence 344555566666677766677 4566544443
No 94
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=37.06 E-value=47 Score=34.36 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEec
Q 011898 177 QALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPL 223 (475)
Q Consensus 177 ~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPL 223 (475)
+.+.+.+++.|.++.|.-| .=.+|+++|-++.+.+-++++|++||=
T Consensus 106 ~g~~~lf~~~Gv~~vi~gg-qt~nPS~~dl~~Ai~~~~a~~VivLPN 151 (313)
T PF13684_consen 106 EGLAELFRSLGVDVVISGG-QTMNPSTEDLLNAIEKVGADEVIVLPN 151 (313)
T ss_pred ccHHHHHHhCCCeEEEeCC-CCCCCCHHHHHHHHHhCCCCeEEEEeC
Confidence 4455566555644443333 336899999999998889999999985
No 95
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=36.33 E-value=43 Score=35.30 Aligned_cols=66 Identities=23% Similarity=0.428 Sum_probs=51.9
Q ss_pred CCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHH
Q 011898 344 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSF 411 (475)
Q Consensus 344 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp~f 411 (475)
.|.+|.-...|+...+.|++.|+-....--++-.=.++|| .+.++..++.|. .+..+++.+-|...
T Consensus 6 rw~g~~D~v~l~~irQ~Gv~gIV~aLh~iP~g~~W~~~~I-~~~k~~ie~~Gl-~~~vvESvPvhedI 71 (362)
T COG1312 6 RWYGPNDPVTLEDIRQAGVKGVVTALHHIPAGEVWPVEEI-LKRKEEIESAGL-TWSVVESVPVHEDI 71 (362)
T ss_pred EEecCCCCccHHHHHHhCccceeccCCCCCCCCcCcHHHH-HHHHHHHHHcCc-eEEeecCCCHHHHH
Confidence 5888866667888888899999998887777776666776 345677778887 69999999988754
No 96
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=36.22 E-value=78 Score=28.73 Aligned_cols=83 Identities=18% Similarity=0.180 Sum_probs=52.9
Q ss_pred CCcccCChhhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHHHHHHHHHHHhcCC-CceEEEeeecc--CCCH
Q 011898 127 PDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNL-PVNVYVGMRYW--YPFT 203 (475)
Q Consensus 127 ~~Vi~lP~~~~~~~~~L~~~Ia~~R~~k~~~~Y~~IGggSPL~~~T~~qa~~L~~~L~~~~~-~~~V~~amrY~--~P~i 203 (475)
=.||++.. .-+...++...+ .++=..|| -|-|+..|......+.++|++.+. +++|.+|=-.. ....
T Consensus 28 feVidLG~-----~v~~e~~v~aa~----~~~adiVg-lS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~ 97 (128)
T cd02072 28 FNVVNLGV-----LSPQEEFIDAAI----ETDADAIL-VSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDF 97 (128)
T ss_pred CEEEECCC-----CCCHHHHHHHHH----HcCCCEEE-EeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhh
Confidence 36777752 234555554321 11222344 588888888888888889988875 78899983321 1123
Q ss_pred HHHHHHHHHCCCCEEE
Q 011898 204 EEAVQQIKRDRITRLV 219 (475)
Q Consensus 204 edal~~l~~~Gv~rIv 219 (475)
++..++|++.|++++.
T Consensus 98 ~~~~~~L~~~Gv~~vf 113 (128)
T cd02072 98 EDVEKRFKEMGFDRVF 113 (128)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 5567789999999763
No 97
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.69 E-value=2.7e+02 Score=31.13 Aligned_cols=134 Identities=15% Similarity=0.296 Sum_probs=68.6
Q ss_pred HHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHHhccCCCCCEEEeccCC--------------CChHHHHH
Q 011898 204 EEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWY--------------QREGYVNS 269 (475)
Q Consensus 204 edal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~~~--------------~~p~yI~a 269 (475)
.+.|.+|.+-|.+ .+ .|-|+ |.+.+.+.+.+- ...+.-+++|. .+|.|++.
T Consensus 157 krIidrm~~lGmT--pv---LPaFa----G~VP~al~rlfP------esnf~rl~rWn~f~s~~~C~l~v~P~dplF~eI 221 (666)
T KOG2233|consen 157 KRIIDRMLELGMT--PV---LPAFA----GHVPDALERLFP------ESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEI 221 (666)
T ss_pred HHHHHHHHHcCCC--cc---chhhc----cccHHHHHHhCc------hhceeeccccCCCCcceeeeEEccCCcchHHHH
Confidence 5577788888877 33 44333 455565555432 22333344442 57788876
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCC-------eEEEEeCCCCC
Q 011898 270 MADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINND-------HTLAYQSRVGP 342 (475)
Q Consensus 270 la~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~-------~~lafQSr~Gp 342 (475)
=..-|++-.++++. +.=++++--.=+-.. -..-+.-+..|+.+|++.++. .+.. |..++++ |
T Consensus 222 gs~Flr~~~kefG~---~tniy~~DpFNE~~P---p~sepey~~staaAiyesm~k--vdknaVWllQgWlF~~d~-F-- 290 (666)
T KOG2233|consen 222 GSTFLRHQIKEFGG---VTNIYSADPFNEILP---PESEPEYVKSTAAAIYESMKK--VDKNAVWLLQGWLFTYDP-F-- 290 (666)
T ss_pred HHHHHHHHHHHhCC---cccccccCcccccCC---CCCChHHHHHHHHHHHHHHhc--cCcceEEeeecceeecCC-C--
Confidence 55556666666642 112333321100000 001235677889999998853 2222 3333333 2
Q ss_pred CCCCCCCHHHHHHHhhhcCCceEEEE
Q 011898 343 VKWLKPYTDEVLVELGQKGVKSLLAI 368 (475)
Q Consensus 343 ~~WL~P~t~d~L~~L~~~G~k~VvVv 368 (475)
|..|.++..|..... | +++|.
T Consensus 291 --W~~~~ikafL~avP~-G--rllVL 311 (666)
T KOG2233|consen 291 --WPPWQIKAFLSAVPR-G--RLLVL 311 (666)
T ss_pred --CChHHHHHHHhcCCc-C--cEEEE
Confidence 765666655555443 4 56654
No 98
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.96 E-value=5.9e+02 Score=26.90 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=35.5
Q ss_pred eEEEEcccccccchhhHHHHHHHHHHHHHHcCCc---eEEEcCCCCCCHHHHHHHHHHHHH
Q 011898 364 SLLAIPVSFVSEHIETLEEIDMEYKELALESGIE---NWGRVPALNCTPSFITDLADAVIE 421 (475)
Q Consensus 364 ~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~---~~~rvp~LNdsp~fI~aLadlV~e 421 (475)
+--++|+.=-- ++| ||-...++..++.|.. +|..+.=+||+++-++.|++++..
T Consensus 213 R~~imP~~~~~-~l~---el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~ 269 (344)
T PRK14464 213 RARLLPRAPRI-APE---ELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKG 269 (344)
T ss_pred hheeCCccCCC-CHH---HHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 34567763111 244 4433445555556531 688999999999999999999874
No 99
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=33.93 E-value=3.2e+02 Score=28.69 Aligned_cols=101 Identities=23% Similarity=0.365 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccc----------------
Q 011898 309 RDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSF---------------- 372 (475)
Q Consensus 309 ~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigF---------------- 372 (475)
.+++...++...+ + |. ..++++ |++|=|..++.+.++.+++.|.+.|-+-.=|+
T Consensus 45 ~eei~~~~~~~~~-~---Gv-~kvRlT-----GGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~r 114 (322)
T COG2896 45 LEEIRRLVRAFAE-L---GV-EKVRLT-----GGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLDR 114 (322)
T ss_pred HHHHHHHHHHHHH-c---Cc-ceEEEe-----CCCchhhcCHHHHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCcE
Confidence 5677777777666 5 76 478884 78888999999999998887777777765554
Q ss_pred cccchhhHH-----HHH--------HHHHHHHHHcCCc----eEEEcCCCCCCHHHHHHHHHHHHH
Q 011898 373 VSEHIETLE-----EID--------MEYKELALESGIE----NWGRVPALNCTPSFITDLADAVIE 421 (475)
Q Consensus 373 vsDhlETL~-----EID--------iE~re~a~e~G~~----~~~rvp~LNdsp~fI~aLadlV~e 421 (475)
+..+++||. +|- ++.-+.|.+.|.. |.+.++-+|++. +..|++...+
T Consensus 115 VNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~e--i~~l~e~~~~ 178 (322)
T COG2896 115 VNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDE--IEDLLEFAKE 178 (322)
T ss_pred EEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHH--HHHHHHHHhh
Confidence 233444332 222 3445777788875 677888888876 3345554444
No 100
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=33.90 E-value=4.8e+02 Score=25.81 Aligned_cols=147 Identities=11% Similarity=0.099 Sum_probs=79.4
Q ss_pred HHHHHHHHHCCCCEEEEE-ecCCcccc----cChHHHHHHHHHHHHHhccCC-CCCEEEeccCCCChHHHHHHHHHHHHH
Q 011898 204 EEAVQQIKRDRITRLVVL-PLYPQFSI----STTGSSIRVLQNIFREDAYLS-RLPVSIIRSWYQREGYVNSMADLIQKE 277 (475)
Q Consensus 204 edal~~l~~~Gv~rIvvl-PLyPqYS~----sTtgS~~~~l~~~~~~~~~~~-~~~v~~I~~~~~~p~yI~ala~~I~~~ 277 (475)
.+.++...+.|++.|.++ |..+++.. .|...+++.+.+.++..+... .+.+...+....+|.|+..+++.+.++
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEA 151 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHC
Confidence 445677778899977663 55554332 122233333333333211111 233445555556788887777666543
Q ss_pred HhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHh
Q 011898 278 LGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVEL 357 (475)
Q Consensus 278 l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L 357 (475)
+ .+. +-+ .+..|--+|.++.+.++.+.+.+ +. ++.+-++-..| =.+..++..+
T Consensus 152 ----G-~~~--i~l---------~DT~G~~~P~~v~~lv~~l~~~~---~~--~l~~H~Hn~~G------la~An~laAi 204 (259)
T cd07939 152 ----G-ADR--LRF---------ADTVGILDPFTTYELIRRLRAAT---DL--PLEFHAHNDLG------LATANTLAAV 204 (259)
T ss_pred ----C-CCE--EEe---------CCCCCCCCHHHHHHHHHHHHHhc---CC--eEEEEecCCCC------hHHHHHHHHH
Confidence 1 121 211 23457778999999999998886 32 33333344444 3445555555
Q ss_pred hhcCCceEEEE--cccccccchh
Q 011898 358 GQKGVKSLLAI--PVSFVSEHIE 378 (475)
Q Consensus 358 ~~~G~k~VvVv--PigFvsDhlE 378 (475)
+.|++.|-.- .+|=-+.|.-
T Consensus 205 -~aG~~~vd~s~~G~G~~aGN~~ 226 (259)
T cd07939 205 -RAGATHVSVTVNGLGERAGNAA 226 (259)
T ss_pred -HhCCCEEEEecccccccccCcC
Confidence 4688776643 4444445554
No 101
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=33.47 E-value=5.8e+02 Score=26.63 Aligned_cols=47 Identities=17% Similarity=0.058 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCCceEEEeeeccCC----CHHHHHHHHHHCCCCEEEEE
Q 011898 175 QAQALKTALEAKNLPVNVYVGMRYWYP----FTEEAVQQIKRDRITRLVVL 221 (475)
Q Consensus 175 qa~~L~~~L~~~~~~~~V~~amrY~~P----~iedal~~l~~~Gv~rIvvl 221 (475)
|++.+.+.|.+.|.+..+..-++..++ .++++++++....++-||+.
T Consensus 21 ~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfT 71 (381)
T PRK07239 21 RAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVAT 71 (381)
T ss_pred CHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEe
Confidence 677778888887765544444444332 45566777665567755543
No 102
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=33.28 E-value=50 Score=34.99 Aligned_cols=66 Identities=18% Similarity=0.326 Sum_probs=38.4
Q ss_pred CCCCC-CHHHHHHHhhhc-CCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHH
Q 011898 344 KWLKP-YTDEVLVELGQK-GVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSF 411 (475)
Q Consensus 344 ~WL~P-~t~d~L~~L~~~-G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp~f 411 (475)
.|.+| .=...|..++++ |++.|+..-+-...+-.=+..+| .+.++..+++|. ++..|++++-+...
T Consensus 6 rw~g~~~dpv~l~~irQ~~Gv~giV~al~~~p~g~~W~~e~i-~~~k~~ie~~GL-~~~vIEsvpv~e~I 73 (351)
T PF03786_consen 6 RWFGPEDDPVTLWDIRQQPGVTGIVTALHDIPNGEVWDYEEI-RALKERIEAAGL-TLSVIESVPVHEDI 73 (351)
T ss_dssp E---TTT-SS-HHHHCTSTTEEEEEE--SSS-TTS---HHHH-HHHHHHHHCTT--EEEEEES----HHH
T ss_pred eeeCCCCCcchHHHHHHhcCCCCeeeCCCCCCCCCCCCHHHH-HHHHHHHHHcCC-eEEEEecCChHHHH
Confidence 58899 666789999998 99999988776666655555555 346778889998 59999998877643
No 103
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=33.11 E-value=1.5e+02 Score=29.93 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=40.6
Q ss_pred CHHHHHH---HhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEE-cCCCCCCHHHHHHHHH
Q 011898 349 YTDEVLV---ELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGR-VPALNCTPSFITDLAD 417 (475)
Q Consensus 349 ~t~d~L~---~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~r-vp~LNdsp~fI~aLad 417 (475)
+|.++++ ...+.|++.++++||.|..-.-|.+++ -++++++..++.-+.| .+-.+-+|+.+..|++
T Consensus 79 ~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~---~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 79 GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYA---HVEAVCKSTDLGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHH---HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 4555444 456679999999999887544444444 4677777665543444 2334566776666654
No 104
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=33.06 E-value=5.1e+02 Score=27.79 Aligned_cols=121 Identities=20% Similarity=0.329 Sum_probs=69.3
Q ss_pred HHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCC-CHHHHH
Q 011898 276 KELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKP-YTDEVL 354 (475)
Q Consensus 276 ~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P-~t~d~L 354 (475)
+.++++++-.+ +||| .|||...--++.. .|+++|. .++.--.+-+-||+ +=.-| .+.+.|
T Consensus 151 ~YIa~hPeI~e--VllS-----------GGDPL~ls~~~L~-~ll~~L~--~IpHv~iiRi~TR~---pvv~P~RIt~~L 211 (369)
T COG1509 151 DYIAAHPEIRE--VLLS-----------GGDPLSLSDKKLE-WLLKRLR--AIPHVKIIRIGTRL---PVVLPQRITDEL 211 (369)
T ss_pred HHHHcCchhhe--EEec-----------CCCccccCHHHHH-HHHHHHh--cCCceeEEEeeccc---ceechhhccHHH
Confidence 44455544233 6777 4899743333332 2344453 33322346677875 22234 223555
Q ss_pred HHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHH---HcCCc---eEEEcCCCCCCHHHHHHHHHHHHH
Q 011898 355 VELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELAL---ESGIE---NWGRVPALNCTPSFITDLADAVIE 421 (475)
Q Consensus 355 ~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~---e~G~~---~~~rvp~LNdsp~fI~aLadlV~e 421 (475)
-++-++..+.|.++ -|+..=.||+.|.++.++ .+|+. +=+...-.||+|.....|.+....
T Consensus 212 ~~~l~~~~~~v~~~------tH~NHp~Eit~e~~~A~~~L~~aGv~l~NQsVLLrGVND~~evl~~L~~~L~~ 278 (369)
T COG1509 212 CEILGKSRKPVWLV------THFNHPNEITPEAREACAKLRDAGVPLLNQSVLLRGVNDDPEVLKELSRALFD 278 (369)
T ss_pred HHHHhccCceEEEE------cccCChhhcCHHHHHHHHHHHHcCceeecchheecccCCCHHHHHHHHHHHHH
Confidence 55555555666665 488888899988886654 57763 234566789999887766655544
No 105
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=32.89 E-value=4.4e+02 Score=27.04 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=34.4
Q ss_pred CCHHHHHHHhhhcCCceEEEEcc---cccc--cchhhHHHHHHHHHHHHHHcC-CceEEEcCCCCCCHHHHHHHH
Q 011898 348 PYTDEVLVELGQKGVKSLLAIPV---SFVS--EHIETLEEIDMEYKELALESG-IENWGRVPALNCTPSFITDLA 416 (475)
Q Consensus 348 P~t~d~L~~L~~~G~k~VvVvPi---gFvs--DhlETL~EIDiE~re~a~e~G-~~~~~rvp~LNdsp~fI~aLa 416 (475)
-.+.+.++.+.+.|++.+.+.|. +..- |++-+-.|.....+++.+ .+ .+. -.+|.||.|++.|.
T Consensus 178 ~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~~~~~~l~~~e~~~~~~~~~~-~~~~~~----~~~~~s~~~l~~l~ 247 (318)
T TIGR03470 178 EEVAEFFDYLTDLGVDGMTISPGYAYEKAPDQDHFLGRRQTKKLFREVLS-NGNGKR----WRFNHSPLFLDFLA 247 (318)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCcccccccccccccCHHHHHHHHHHHHh-hccCCC----CcccCCHHHHHHHc
Confidence 46677777788889998887653 2222 223222222222223322 22 122 24588899987663
No 106
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.14 E-value=5.3e+02 Score=26.40 Aligned_cols=100 Identities=24% Similarity=0.359 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCC-e--EEEEeCCCC----CCCC---CCCCHHHHHHHhhhcCCceEEEEcccccccchh
Q 011898 309 RDQMEECIYLIMQRLKDRGINND-H--TLAYQSRVG----PVKW---LKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIE 378 (475)
Q Consensus 309 ~~q~~~t~~~v~e~L~~~g~~~~-~--~lafQSr~G----p~~W---L~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlE 378 (475)
++++.++++.+.++ +++-+ + ..-|++.-| --.| .=|+-.+.+++|.++|+|=++.+.|....|+-
T Consensus 28 q~~v~~~~~~~r~~----~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~- 102 (317)
T cd06599 28 QEALLEFIDKCREH----DIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHP- 102 (317)
T ss_pred HHHHHHHHHHHHHc----CCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCH-
Confidence 55666666555544 77433 1 234665411 1123 22899999999999999988888888766642
Q ss_pred hHHHHHHHHHHHHHHcCCceEEEcC----------------CCC-CCHHHHHHHHHHHHHHc
Q 011898 379 TLEEIDMEYKELALESGIENWGRVP----------------ALN-CTPSFITDLADAVIEAL 423 (475)
Q Consensus 379 TL~EIDiE~re~a~e~G~~~~~rvp----------------~LN-dsp~fI~aLadlV~e~l 423 (475)
. ++|. .+.|. |+.-. .++ .+|...+...+.+.+.+
T Consensus 103 ~-------y~e~-~~~g~--~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 154 (317)
T cd06599 103 R-------YKEL-KEAGA--FIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEAL 154 (317)
T ss_pred H-------HHHH-HHCCc--EEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHH
Confidence 1 3333 23342 21211 111 48888888888886554
No 107
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=31.67 E-value=5.4e+02 Score=25.71 Aligned_cols=198 Identities=16% Similarity=0.180 Sum_probs=101.6
Q ss_pred CCCc-hHHHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEE---ecCCcccccChHHHHHHH
Q 011898 164 GGSP-LRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVL---PLYPQFSISTTGSSIRVL 239 (475)
Q Consensus 164 ggSP-L~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvl---PLyPqYS~sTtgS~~~~l 239 (475)
|.+| ..+.|-++.++|++ .++-|+.|.-|- |++...++.....+...|-+. ++.+... ..+ ..
T Consensus 34 g~dPH~y~~~p~d~~~l~~------Adliv~~G~~~e-~w~~k~~~~~~~~~~~~v~~~~~i~~~~~~~--~~~---~~- 100 (282)
T cd01017 34 GTEPHDFEPSPKDIARIAD------ADVFVYNGLGME-TWAEKVLKSLQNKKLKVVEASKGIKLLKAGG--AEH---DH- 100 (282)
T ss_pred CCCCcCCCCCHHHHHHHHh------CCEEEEcCcchH-HHHHHHHHhcccCCceEEECCCCcccccccc--ccc---cc-
Confidence 4455 45556677777764 478888887764 777777766532222222111 1111100 000 00
Q ss_pred HHHHHHhccCCCCCEEEeccCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHH
Q 011898 240 QNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLI 319 (475)
Q Consensus 240 ~~~~~~~~~~~~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v 319 (475)
. .......+ ..=+++|-+|.....+++.|.++|.+.. |+.. ...++|...|..++.+.-+.+
T Consensus 101 -~--~~~~~~~~---~~dPH~Wldp~~~~~~a~~Ia~~L~~~d-P~~~-----------~~y~~N~~~~~~~L~~l~~~~ 162 (282)
T cd01017 101 -D--HSHSHHHG---DYDPHVWLSPVLAIQQVENIKDALIKLD-PDNK-----------EYYEKNAAAYAKKLEALDQEY 162 (282)
T ss_pred -c--ccccccCC---CCCCccccCHHHHHHHHHHHHHHHHHhC-cccH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000 1124788999999999999999997653 2211 112345667888888888888
Q ss_pred HHHHhccCCCCCeEEEEeC-------CCCC--------CCCCCCCH---HHHHHHhhhcCCceEEEEcccccccchhhHH
Q 011898 320 MQRLKDRGINNDHTLAYQS-------RVGP--------VKWLKPYT---DEVLVELGQKGVKSLLAIPVSFVSEHIETLE 381 (475)
Q Consensus 320 ~e~L~~~g~~~~~~lafQS-------r~Gp--------~~WL~P~t---~d~L~~L~~~G~k~VvVvPigFvsDhlETL~ 381 (475)
.+.+.. +....-++|.- ++|- .+=-+|+. .+.++.+.+.|++ ++++-+.|-..-+|+
T Consensus 163 ~~~~~~--~~~~~~v~~H~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~-~if~e~~~~~~~~~~-- 237 (282)
T cd01017 163 RAKLAK--AKGKTFVTQHAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVK-YIFFEENASSKIAET-- 237 (282)
T ss_pred HHHHhc--cCCCeEEEecccHHHHHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHHcCCC-EEEEeCCCChHHHHH--
Confidence 777642 11111122211 1121 01124443 3344445556765 555555665544443
Q ss_pred HHHHHHHHHHHHcCCceEEEcCCCC
Q 011898 382 EIDMEYKELALESGIENWGRVPALN 406 (475)
Q Consensus 382 EIDiE~re~a~e~G~~~~~rvp~LN 406 (475)
++++.|++ +..++.+.
T Consensus 238 --------la~~~g~~-v~~ld~l~ 253 (282)
T cd01017 238 --------LAKETGAK-LLVLNPLE 253 (282)
T ss_pred --------HHHHcCCc-EEEecccc
Confidence 56788885 55666554
No 108
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=31.43 E-value=4.9e+02 Score=25.99 Aligned_cols=53 Identities=23% Similarity=0.244 Sum_probs=34.9
Q ss_pred CCCceEEEeeeccCCCHHHHHHHH---HHCCCCEEEEEecCCcccccChHHHHHHHHHHH
Q 011898 187 NLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIF 243 (475)
Q Consensus 187 ~~~~~V~~amrY~~P~iedal~~l---~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~ 243 (475)
+..++|..| -+..+++++++.. ++.|++-++++| |.|...|.....+.+.+..
T Consensus 68 ~~~~~vi~g--v~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~~~~s~~~l~~y~~~ia 123 (289)
T PF00701_consen 68 AGRVPVIAG--VGANSTEEAIELARHAQDAGADAVLVIP--PYYFKPSQEELIDYFRAIA 123 (289)
T ss_dssp TTSSEEEEE--EESSSHHHHHHHHHHHHHTT-SEEEEEE--STSSSCCHHHHHHHHHHHH
T ss_pred cCceEEEec--CcchhHHHHHHHHHHHhhcCceEEEEec--cccccchhhHHHHHHHHHH
Confidence 345777776 4666899998865 457999998876 5666666555555554444
No 109
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=30.95 E-value=2.9e+02 Score=27.94 Aligned_cols=61 Identities=13% Similarity=0.038 Sum_probs=37.5
Q ss_pred HHHHHHhcCCCceEEEeeeccCCCHHHHHHHH---HHCCCCEEEEEecCCcccccChHHHHHHHHHHH
Q 011898 179 LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIF 243 (475)
Q Consensus 179 L~~~L~~~~~~~~V~~amrY~~P~iedal~~l---~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~ 243 (475)
++...+.....++|..|- +.+.++++++.. .+.|++-++++| |.|...|-....+.+.+..
T Consensus 63 ~~~~~~~~~~~~~viagv--g~~~t~~ai~~a~~a~~~Gad~v~v~~--P~y~~~~~~~l~~~f~~va 126 (293)
T PRK04147 63 LEIVAEEAKGKVKLIAQV--GSVNTAEAQELAKYATELGYDAISAVT--PFYYPFSFEEICDYYREII 126 (293)
T ss_pred HHHHHHHhCCCCCEEecC--CCCCHHHHHHHHHHHHHcCCCEEEEeC--CcCCCCCHHHHHHHHHHHH
Confidence 333343333356677764 568899998754 567999999988 6676655444444444433
No 110
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=29.87 E-value=1.8e+02 Score=29.43 Aligned_cols=137 Identities=15% Similarity=0.210 Sum_probs=73.6
Q ss_pred EEEeccCCCChH-HHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCCh---HHHHHHHHHHHHHHHhccCCC
Q 011898 254 VSIIRSWYQREG-YVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPY---RDQMEECIYLIMQRLKDRGIN 329 (475)
Q Consensus 254 v~~I~~~~~~p~-yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY---~~q~~~t~~~v~e~L~~~g~~ 329 (475)
.-.+.+|.++-. =.+++.++|+..++..+- + .|+...+ .|.-+ .+|-.+.++.+.+...
T Consensus 9 ~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv-~--gi~v~Gs---------tGE~~~Ls~eEr~~~~~~~~~~~~----- 71 (293)
T PRK04147 9 AALLTPFDEDGQIDEQGLRRLVRFNIEKQGI-D--GLYVGGS---------TGEAFLLSTEEKKQVLEIVAEEAK----- 71 (293)
T ss_pred eeeECcCCCCCCcCHHHHHHHHHHHHhcCCC-C--EEEECCC---------ccccccCCHHHHHHHHHHHHHHhC-----
Confidence 345566655433 345667777665541111 1 2322211 23333 3444455566666552
Q ss_pred CCeEEEEeCCCCCCCCCCCCHHHHHHH---hhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEE-cCC-
Q 011898 330 NDHTLAYQSRVGPVKWLKPYTDEVLVE---LGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGR-VPA- 404 (475)
Q Consensus 330 ~~~~lafQSr~Gp~~WL~P~t~d~L~~---L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~r-vp~- 404 (475)
.+..+-.+. | .++|+++++. ..+.|+..|+++||.|+.-.-| ++-.-++++++..+..-+.| .|.
T Consensus 72 ~~~~viagv--g-----~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~---~l~~~f~~va~a~~lPv~iYn~P~~ 141 (293)
T PRK04147 72 GKVKLIAQV--G-----SVNTAEAQELAKYATELGYDAISAVTPFYYPFSFE---EICDYYREIIDSADNPMIVYNIPAL 141 (293)
T ss_pred CCCCEEecC--C-----CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHH---HHHHHHHHHHHhCCCCEEEEeCchh
Confidence 233343333 3 3678877664 4567999999999998775444 33334678887655543333 342
Q ss_pred --CCCCHHHHHHHHH
Q 011898 405 --LNCTPSFITDLAD 417 (475)
Q Consensus 405 --LNdsp~fI~aLad 417 (475)
.+-+++++..|++
T Consensus 142 tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 142 TGVNLSLDQFNELFT 156 (293)
T ss_pred hccCCCHHHHHHHhc
Confidence 3456666666653
No 111
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.80 E-value=1.2e+02 Score=30.83 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCe---EEEEeCCCCCCCC---CCCCHHHHHHHhhhcCCceEEEEcccccccchhhHHH
Q 011898 309 RDQMEECIYLIMQRLKDRGINNDH---TLAYQSRVGPVKW---LKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEE 382 (475)
Q Consensus 309 ~~q~~~t~~~v~e~L~~~g~~~~~---~lafQSr~Gp~~W---L~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~E 382 (475)
.+++.++++.+.+ .|++.++ ...||...|.-.| .=|+..+.+++|.++|+|=++.+-|.+..|+ + +
T Consensus 29 ~~~v~~~~~~~~~----~~iP~d~i~iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s-~-~-- 100 (303)
T cd06592 29 QETVLNYAQEIID----NGFPNGQIEIDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDS-E-N-- 100 (303)
T ss_pred HHHHHHHHHHHHH----cCCCCCeEEeCCCccccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCC-H-H--
Confidence 4555555555544 3764332 3467776653222 2389999999999999998888887665554 2 1
Q ss_pred HHHHHHHHHHHcCCceEEEc-----CC-----------C-CCCHHHHHHHHHHHHHHc
Q 011898 383 IDMEYKELALESGIENWGRV-----PA-----------L-NCTPSFITDLADAVIEAL 423 (475)
Q Consensus 383 IDiE~re~a~e~G~~~~~rv-----p~-----------L-Ndsp~fI~aLadlV~e~l 423 (475)
++| +.+.|. +.+- |. + =.+|+..+.+.+.+.+.+
T Consensus 101 ----~~e-~~~~g~--~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (303)
T cd06592 101 ----FRE-AVEKGY--LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQ 151 (303)
T ss_pred ----HHh-hhhCCe--EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHH
Confidence 222 233332 2221 11 1 246888888888887665
No 112
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=29.78 E-value=1.1e+02 Score=32.72 Aligned_cols=50 Identities=34% Similarity=0.416 Sum_probs=40.2
Q ss_pred CCHHHHHHHhhhcCCceEEEE-cccccccchhhHHHHHHHHHHHHHHcCCc
Q 011898 348 PYTDEVLVELGQKGVKSLLAI-PVSFVSEHIETLEEIDMEYKELALESGIE 397 (475)
Q Consensus 348 P~t~d~L~~L~~~G~k~VvVv-PigFvsDhlETL~EIDiE~re~a~e~G~~ 397 (475)
|.|.|.|--..+-|+++++|+ -=.=..|.-|+|+=.++|.||+..+.|..
T Consensus 156 PQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 156 PQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred cchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 899999887777799998874 22444567799999999999999998874
No 113
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=29.78 E-value=2.7e+02 Score=28.33 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=49.7
Q ss_pred HHHHHHHHHHCCCCEEEEEecC--Cc--------ccccChHHHHHHHHHHHHHhccCCCCCEEEeccC---CCChHHHHH
Q 011898 203 TEEAVQQIKRDRITRLVVLPLY--PQ--------FSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSW---YQREGYVNS 269 (475)
Q Consensus 203 iedal~~l~~~Gv~rIvvlPLy--Pq--------YS~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~~---~~~p~yI~a 269 (475)
++..|+++.+.|+. +.++|+. |- ...++......-+.-..++....+++=|.+...+ ..+..+.++
T Consensus 90 ~d~~i~~a~~~Gi~-~~lv~~wg~~~~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~~~~~~~~~~w~~ 168 (289)
T PF13204_consen 90 LDRRIEKANELGIE-AALVPFWGCPYVPGTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDYFDTEKTRADWDA 168 (289)
T ss_dssp HHHHHHHHHHTT-E-EEEESS-HHHHH-------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS--TTSSHHHHHH
T ss_pred HHHHHHHHHHCCCe-EEEEEEECCccccccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCccCCCCcCHHHHHH
Confidence 46677888888886 4567776 31 0233333333333333344444556668888888 678888888
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCCch
Q 011898 270 MADLIQKELGKFQKPEEVMIFFSAHGVPV 298 (475)
Q Consensus 270 la~~I~~~l~~~~~~~~~~LLFSaHglP~ 298 (475)
+++.|++.- |.. |.|+|.-+.
T Consensus 169 ~~~~i~~~d-----p~~---L~T~H~~~~ 189 (289)
T PF13204_consen 169 MARGIKEND-----PYQ---LITIHPCGR 189 (289)
T ss_dssp HHHHHHHH-------SS----EEEEE-BT
T ss_pred HHHHHHhhC-----CCC---cEEEeCCCC
Confidence 888887742 222 789998763
No 114
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.75 E-value=2.9e+02 Score=29.05 Aligned_cols=150 Identities=17% Similarity=0.254 Sum_probs=74.5
Q ss_pred cEEEEEEccCCCC-CcCcHHHHHHhhcCCCCc----cc-----CChhhhhhhhHHHHHH-----------H-hccChhhH
Q 011898 99 KVGVLLLNLGGPD-TLHDVQPFLFNLFADPDI----IR-----LPRLFRFLQWPLAKLI-----------S-VVRAPKSK 156 (475)
Q Consensus 99 k~aVLLlNlG~P~-s~~dV~~FL~~~l~D~~V----i~-----lP~~~~~~~~~L~~~I-----------a-~~R~~k~~ 156 (475)
-.+|+++-||.|- .++.|.++++.+-.+-.| |. +++.+. -|+... + -+-+ -..
T Consensus 149 ~~~IvfmGmGEPlln~~~v~~~i~~l~~~~~i~~r~itvST~G~~~~i~----~L~~~~~~~~~~~~~~laiSLha-~~~ 223 (345)
T PRK14457 149 VSHVVFMGMGEPLLNIDEVLAAIRCLNQDLGIGQRRITVSTVGVPKTIP----QLAELAFQRLGRLQFTLAVSLHA-PNQ 223 (345)
T ss_pred CCEEEEEecCccccCHHHHHHHHHHHhcccCCccCceEEECCCchhhHH----HHHhhhhhhcccCceEEEEEeCC-CCH
Confidence 3689999999999 678899999887554222 11 222111 122111 0 0001 123
Q ss_pred Hhhhcc---CCCCchHHHHHHHHHHHHHHHHhcCCCceEEE----eeeccCCCHHHHHHHHHHCCCCEEEEEecCCc---
Q 011898 157 EGYAAI---GGGSPLRKITDEQAQALKTALEAKNLPVNVYV----GMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQ--- 226 (475)
Q Consensus 157 ~~Y~~I---GggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~----amrY~~P~iedal~~l~~~Gv~rIvvlPLyPq--- 226 (475)
+.|++| ..+-||. ++.+++.+.+.+.+..+.+.+ |+.-..-.+++..+-++.-++ +|=++|.-|.
T Consensus 224 e~r~~i~p~~~~~~l~----~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~-~VnLIPynp~~~~ 298 (345)
T PRK14457 224 KLRETLIPSAKNYPIE----NLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQS-HVNLIPYNPIDEV 298 (345)
T ss_pred HHHHHhcCCccCCCHH----HHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCC-eEEEecCCCCCCC
Confidence 455555 2333443 344555555555554444444 333333333333333333344 7888888663
Q ss_pred -ccccChHHHHHHHHHHHHHhccCCCCCEEEeccCCCC
Q 011898 227 -FSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQR 263 (475)
Q Consensus 227 -YS~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~~~~~ 263 (475)
|...+ ..-++.+.+.+++. ++++.+-++.+.+
T Consensus 299 ~~~~ps-~e~i~~f~~~L~~~----Gi~vtvR~~~G~d 331 (345)
T PRK14457 299 EFQRPS-PKRIQAFQRVLEQR----GVAVSVRASRGLD 331 (345)
T ss_pred CCCCCC-HHHHHHHHHHHHHC----CCeEEEeCCCCCc
Confidence 22222 22344455555442 4566666666653
No 115
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=29.55 E-value=51 Score=27.15 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHCCCCEEEEEec
Q 011898 200 YPFTEEAVQQIKRDRITRLVVLPL 223 (475)
Q Consensus 200 ~P~iedal~~l~~~Gv~rIvvlPL 223 (475)
.--+-+.+++|++.|++.|+++|+
T Consensus 49 ~~~~~~~~~~Lk~~GA~~Ilv~pi 72 (75)
T PF08029_consen 49 EKQVWDLMDKLKAAGASDILVLPI 72 (75)
T ss_dssp CCCHHHHHHHHHCTT-EEEEEEE-
T ss_pred HHHHHHHHHHHHHcCCCEEEEEec
Confidence 456889999999999999999997
No 116
>PRK12677 xylose isomerase; Provisional
Probab=29.43 E-value=1.8e+02 Score=30.91 Aligned_cols=64 Identities=23% Similarity=0.259 Sum_probs=41.9
Q ss_pred CeEEEEeCC--CCCC--CCCCCCHHHHHHHhhhcCCceEEEEc---ccccccchhhHHHHHHHHHHHHHHcCCc
Q 011898 331 DHTLAYQSR--VGPV--KWLKPYTDEVLVELGQKGVKSLLAIP---VSFVSEHIETLEEIDMEYKELALESGIE 397 (475)
Q Consensus 331 ~~~lafQSr--~Gp~--~WL~P~t~d~L~~L~~~G~k~VvVvP---igFvsDhlETL~EIDiE~re~a~e~G~~ 397 (475)
-|+++||.+ +|+. +++ +.++.++.+++.|++.|-+.. +-|-.+..|. ...-.+.++..++.|++
T Consensus 12 ~w~~~~~~~~~~g~~~~~~~--~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~-~~~~~~lk~~l~~~GL~ 82 (384)
T PRK12677 12 LWTVGWQGRDPFGDATRPPL--DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAER-DRIIKRFKKALDETGLV 82 (384)
T ss_pred EeeccCCCCCCCCCCCCCCC--CHHHHHHHHHHhCCCEEEecccccCCCCCChhhh-HHHHHHHHHHHHHcCCe
Confidence 489999986 4532 232 689999999999999887753 2333333221 11223467788899985
No 117
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=29.05 E-value=97 Score=31.76 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=35.4
Q ss_pred CCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCc
Q 011898 347 KPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIE 397 (475)
Q Consensus 347 ~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~ 397 (475)
.+.+.++++++.+.|+|.++|+.=|| -|+ ...+..+.++++|+.
T Consensus 73 a~~v~~~l~e~~~~Gvk~avIis~Gf----~e~---~~~~l~~~a~~~gir 116 (286)
T TIGR01019 73 APFAADAIFEAIDAGIELIVCITEGI----PVH---DMLKVKRYMEESGTR 116 (286)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCC----CHH---HHHHHHHHHHHcCCE
Confidence 36789999999999999999999898 233 235678889898874
No 118
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=28.99 E-value=6.9e+02 Score=26.17 Aligned_cols=164 Identities=15% Similarity=0.124 Sum_probs=79.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCceEEEeeeccCCC--HHHHHHHHHHCCCCEEEEEecCCccc-------ccChH
Q 011898 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPF--TEEAVQQIKRDRITRLVVLPLYPQFS-------ISTTG 233 (475)
Q Consensus 163 GggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~--iedal~~l~~~Gv~rIvvlPLyPqYS-------~sTtg 233 (475)
|||.|..--...+.+.++ .+.+. ....+. + ..+|. .++-++.|++.|+++|-+=..--.-. ..+..
T Consensus 65 GGGTPs~l~~~~l~~ll~-~i~~~-~~~eit--~-E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~ 139 (370)
T PRK06294 65 GGGTPSLVPPALIQDILK-TLEAP-HATEIT--L-EANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSS 139 (370)
T ss_pred CCCccccCCHHHHHHHHH-HHHhC-CCCeEE--E-EeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHH
Confidence 999996655544444443 34332 222333 3 34554 47889999999999885533311100 11222
Q ss_pred HHHHHHHHHHHHhccCCCCCEEEeccCCCChHHHHHHHHHHHHHHhhcCCCCce--EEEEecCCCchhhhhccC---CCh
Q 011898 234 SSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEV--MIFFSAHGVPVSYVEKAG---DPY 308 (475)
Q Consensus 234 S~~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~--~LLFSaHglP~~~v~~~G---DpY 308 (475)
.+.+.+.. +++.+ ...+.+.+|-.++.. =.+.|.+.++.+++-. ++.+ .-+-..-|+|+.-...+| -|-
T Consensus 140 ~~~~ai~~-~~~~g-~~~v~~Dli~GlPgq--t~~~~~~~l~~~~~l~--~~~is~y~l~~~~gT~l~~~~~~~~~~~~~ 213 (370)
T PRK06294 140 KAIDAVQE-CSEHG-FSNLSIDLIYGLPTQ--SLSDFIVDLHQAITLP--ITHISLYNLTIDPHTSFYKHRKRLLPSIAD 213 (370)
T ss_pred HHHHHHHH-HHHcC-CCeEEEEeecCCCCC--CHHHHHHHHHHHHccC--CCeEEEeeeEecCCChHHHHHhcCCCCCcC
Confidence 22333322 22221 223445566655543 2334455555554322 2321 122233465653221223 233
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCeEEEEeC
Q 011898 309 RDQMEECIYLIMQRLKDRGINNDHTLAYQS 338 (475)
Q Consensus 309 ~~q~~~t~~~v~e~L~~~g~~~~~~lafQS 338 (475)
.++..+..+.+.+.|...|+ .+|+++.-+
T Consensus 214 ~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa 242 (370)
T PRK06294 214 EEILAEMSLAAEELLTSQGF-TRYELASYA 242 (370)
T ss_pred HHHHHHHHHHHHHHHHHcCC-Ceeeeeeee
Confidence 45556666677777776687 466664333
No 119
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=28.91 E-value=1.3e+02 Score=32.65 Aligned_cols=49 Identities=33% Similarity=0.464 Sum_probs=38.1
Q ss_pred CCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCc
Q 011898 348 PYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIE 397 (475)
Q Consensus 348 P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~ 397 (475)
..+.++++++.+.|+|.++++.=||-....| =.++..+..+.+++.|+.
T Consensus 75 ~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~-g~~~~~~l~~~a~~~gir 123 (447)
T TIGR02717 75 KYVPQVVEECGEKGVKGAVVITAGFKEVGEE-GAELEQELVEIARKYGMR 123 (447)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccccCcc-hHHHHHHHHHHHHHcCCE
Confidence 4678999999999999999999898764433 234556778888888874
No 120
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=28.75 E-value=1.7e+02 Score=29.96 Aligned_cols=93 Identities=10% Similarity=0.099 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHH---hhhcCCceEEEEcccccccchhhHHHHHH
Q 011898 309 RDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVE---LGQKGVKSLLAIPVSFVSEHIETLEEIDM 385 (475)
Q Consensus 309 ~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~---L~~~G~k~VvVvPigFvsDhlETL~EIDi 385 (475)
.+|-.+.++.+.+... .+..+-.. +| ..+|+++++. ..+.|+..++|+||.|+.-.-|-+++
T Consensus 60 ~eEr~~v~~~~~~~~~-----grvpvi~G--v~-----~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~--- 124 (309)
T cd00952 60 WEEKQAFVATVVETVA-----GRVPVFVG--AT-----TLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQ--- 124 (309)
T ss_pred HHHHHHHHHHHHHHhC-----CCCCEEEE--ec-----cCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHH---
Confidence 3555566666666652 12222221 12 3566666654 45669999999999877644344433
Q ss_pred HHHHHHHHc-CCceEEE-cCCC---CCCHHHHHHHH
Q 011898 386 EYKELALES-GIENWGR-VPAL---NCTPSFITDLA 416 (475)
Q Consensus 386 E~re~a~e~-G~~~~~r-vp~L---Ndsp~fI~aLa 416 (475)
-++++++.. +..-+.| +|.. +-+++.+.-|+
T Consensus 125 yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 125 FYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred HHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 468888776 4544444 5543 55666666554
No 121
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=28.67 E-value=2e+02 Score=29.11 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHH---hhhcCCceEEEEcccccccchhhHHHHHHH
Q 011898 310 DQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVE---LGQKGVKSLLAIPVSFVSEHIETLEEIDME 386 (475)
Q Consensus 310 ~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~---L~~~G~k~VvVvPigFvsDhlETL~EIDiE 386 (475)
+|-.+.++.+.+... .+..+..+. | ..|+++++. ..+.|+..++++||.|..-.-|-+ -.-
T Consensus 58 eEr~~v~~~~~~~~~-----g~~pvi~gv--~------~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i---~~~ 121 (296)
T TIGR03249 58 AEYEQVVEIAVSTAK-----GKVPVYTGV--G------GNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGL---YAH 121 (296)
T ss_pred HHHHHHHHHHHHHhC-----CCCcEEEec--C------ccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHH---HHH
Confidence 444555666666652 123333322 2 357776655 455799999999998876433444 345
Q ss_pred HHHHHHHcCCceEEEc-CCCCCCHHHHHHHHH
Q 011898 387 YKELALESGIENWGRV-PALNCTPSFITDLAD 417 (475)
Q Consensus 387 ~re~a~e~G~~~~~rv-p~LNdsp~fI~aLad 417 (475)
++++++..+..-+.|- +-.+-+|+.+..|++
T Consensus 122 f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 122 VEAVCESTDLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 7888876655434442 334567777777765
No 122
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=28.41 E-value=5.1e+02 Score=26.14 Aligned_cols=74 Identities=22% Similarity=0.184 Sum_probs=52.6
Q ss_pred eEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHH
Q 011898 332 HTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSF 411 (475)
Q Consensus 332 ~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp~f 411 (475)
+-++|-. +++.--+++-++++++.|++.|++.-..+ + | ..++.+.++++|+..+ ..=+++.++.-
T Consensus 95 vlm~Y~N-----~i~~~G~e~F~~~~~~aGvdgviipDLP~--e------e-~~~~~~~~~~~gi~~I-~lv~PtT~~er 159 (263)
T CHL00200 95 VIFTYYN-----PVLHYGINKFIKKISQAGVKGLIIPDLPY--E------E-SDYLISVCNLYNIELI-LLIAPTSSKSR 159 (263)
T ss_pred EEEeccc-----HHHHhCHHHHHHHHHHcCCeEEEecCCCH--H------H-HHHHHHHHHHcCCCEE-EEECCCCCHHH
Confidence 4455543 34455778899999999999988875554 2 2 3467888899999644 55568888888
Q ss_pred HHHHHHHHH
Q 011898 412 ITDLADAVI 420 (475)
Q Consensus 412 I~aLadlV~ 420 (475)
++.+++...
T Consensus 160 i~~i~~~a~ 168 (263)
T CHL00200 160 IQKIARAAP 168 (263)
T ss_pred HHHHHHhCC
Confidence 877776654
No 123
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=27.87 E-value=4.4e+02 Score=26.15 Aligned_cols=77 Identities=10% Similarity=0.156 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHHhccCCC
Q 011898 172 TDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSR 251 (475)
Q Consensus 172 T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~ 251 (475)
-.+....+++.+.+.| +.+.+......+-.++.++.|.+.+++-+|+.+.... .+.+.+..+. +
T Consensus 16 f~~ii~gIe~~a~~~G--y~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~---------~~~l~~~~~~-----~ 79 (279)
T PF00532_consen 16 FAEIIRGIEQEAREHG--YQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSEND---------DEELRRLIKS-----G 79 (279)
T ss_dssp HHHHHHHHHHHHHHTT--CEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCT---------CHHHHHHHHT-----T
T ss_pred HHHHHHHHHHHHHHcC--CEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccCC---------hHHHHHHHHc-----C
Confidence 3456777888887764 7788888888899999999999999999999855432 1233333322 4
Q ss_pred CCEEEeccCCCCh
Q 011898 252 LPVSIIRSWYQRE 264 (475)
Q Consensus 252 ~~v~~I~~~~~~p 264 (475)
+|+-++++..+++
T Consensus 80 iPvV~~~~~~~~~ 92 (279)
T PF00532_consen 80 IPVVLIDRYIDNP 92 (279)
T ss_dssp SEEEEESS-SCTT
T ss_pred CCEEEEEeccCCc
Confidence 6788888876655
No 124
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=27.39 E-value=7e+02 Score=25.69 Aligned_cols=107 Identities=19% Similarity=0.277 Sum_probs=59.9
Q ss_pred cCCChH---HHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhH
Q 011898 304 AGDPYR---DQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETL 380 (475)
Q Consensus 304 ~GDpY~---~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL 380 (475)
.|||.- ..+.+.++.+.+ + +. -..+.+-||. +..|-.=-+++.++.|.+.| +.+ .+.+-+ .|.+-+
T Consensus 144 GGDPl~~~~~~L~~ll~~l~~-i---~~--v~~iri~Tr~-~v~~p~rit~ell~~L~~~g-~~v-~i~l~~--~h~~el 212 (321)
T TIGR03822 144 GGDPLVLSPRRLGDIMARLAA-I---DH--VKIVRFHTRV-PVADPARVTPALIAALKTSG-KTV-YVALHA--NHAREL 212 (321)
T ss_pred CCCcccCCHHHHHHHHHHHHh-C---CC--ccEEEEeCCC-cccChhhcCHHHHHHHHHcC-CcE-EEEecC--CChhhc
Confidence 388863 345554444433 1 22 1235566764 22221113678888888888 343 333333 334434
Q ss_pred HHHHHHHHHHHHHcCCce---EEEcCCCCCCHHHHHHHHHHHHH
Q 011898 381 EEIDMEYKELALESGIEN---WGRVPALNCTPSFITDLADAVIE 421 (475)
Q Consensus 381 ~EIDiE~re~a~e~G~~~---~~rvp~LNdsp~fI~aLadlV~e 421 (475)
.+--.++-+.+.++|+.- .+...-.|+++.-++.|.+.+.+
T Consensus 213 ~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~ 256 (321)
T TIGR03822 213 TAEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVE 256 (321)
T ss_pred CHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHh
Confidence 454555566777899853 45566678998877777666654
No 125
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=27.21 E-value=3.4e+02 Score=26.89 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=33.4
Q ss_pred CCceEEEeeeccCCCHHHHHHHH---HHCCCCEEEEEecCCcccccChHHHHHHHHHH
Q 011898 188 LPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNI 242 (475)
Q Consensus 188 ~~~~V~~amrY~~P~iedal~~l---~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~ 242 (475)
...+|..|- +.++++++++.. .+.|++-++++| |.|...+-....+.+.+.
T Consensus 65 ~~~~vi~gv--~~~~~~~~i~~a~~a~~~Gad~v~v~p--P~y~~~~~~~~~~~~~~i 118 (281)
T cd00408 65 GRVPVIAGV--GANSTREAIELARHAEEAGADGVLVVP--PYYNKPSQEGIVAHFKAV 118 (281)
T ss_pred CCCeEEEec--CCccHHHHHHHHHHHHHcCCCEEEECC--CcCCCCCHHHHHHHHHHH
Confidence 356777765 667888888854 556999998877 556555544444444443
No 126
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=26.94 E-value=3.1e+02 Score=27.94 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=31.4
Q ss_pred CCCceEEEeeeccCCCHHHHHHHH---HHCCCCEEEEEecCCcccccChHHHHHHH
Q 011898 187 NLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVL 239 (475)
Q Consensus 187 ~~~~~V~~amrY~~P~iedal~~l---~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l 239 (475)
...++|..|- +. .++++++.. .+.|++-++++| |.|...+.....+.+
T Consensus 74 ~~~~pvi~gv--~~-~t~~~i~~~~~a~~~Gadav~~~p--P~y~~~~~~~i~~~f 124 (303)
T PRK03620 74 AGRVPVIAGA--GG-GTAQAIEYAQAAERAGADGILLLP--PYLTEAPQEGLAAHV 124 (303)
T ss_pred CCCCcEEEec--CC-CHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHH
Confidence 4457777776 34 889998855 456999998877 556555543333333
No 127
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=26.16 E-value=6.2e+02 Score=24.66 Aligned_cols=154 Identities=12% Similarity=0.104 Sum_probs=73.6
Q ss_pred ccCCCHHHHHHHHHHCCCCEEEEEecCCc-ccccChHHHHHHHHHHHHHhccCCCCCEEEecc----C-----CCChHHH
Q 011898 198 YWYPFTEEAVQQIKRDRITRLVVLPLYPQ-FSISTTGSSIRVLQNIFREDAYLSRLPVSIIRS----W-----YQREGYV 267 (475)
Q Consensus 198 Y~~P~iedal~~l~~~Gv~rIvvlPLyPq-YS~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~----~-----~~~p~yI 267 (475)
|+.-.+++.++.+++.|++.|=+..-+|+ |....+..-.+.+.+.+++. ++++.-+.. | ..++...
T Consensus 10 ~~~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~----gl~v~s~~~~~~~~~~~~~~~~~~~r 85 (275)
T PRK09856 10 HQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTY----QMPIIGYTPETNGYPYNMMLGDEHMR 85 (275)
T ss_pred heeCCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHc----CCeEEEecCcccCcCccccCCCHHHH
Confidence 44546999999999999997776544342 11111122344555555442 344443321 1 1244455
Q ss_pred HHHHHHHHHHHhh---cCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCC
Q 011898 268 NSMADLIQKELGK---FQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVK 344 (475)
Q Consensus 268 ~ala~~I~~~l~~---~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~ 344 (475)
++..+.+++.++. ++. +..++...|.- .... .+...+.+.+..+.+.+..... .+++++..-.....
T Consensus 86 ~~~~~~~~~~i~~a~~lGa--~~i~~~~~~~~---~~~~-~~~~~~~~~~~l~~l~~~a~~~----gv~l~iE~~~~~~~ 155 (275)
T PRK09856 86 RESLDMIKLAMDMAKEMNA--GYTLISAAHAG---YLTP-PNVIWGRLAENLSELCEYAENI----GMDLILEPLTPYES 155 (275)
T ss_pred HHHHHHHHHHHHHHHHhCC--CEEEEcCCCCC---CCCC-HHHHHHHHHHHHHHHHHHHHHc----CCEEEEecCCCCcc
Confidence 5555555555432 322 22333332211 1100 1122234444445555555333 45788875321223
Q ss_pred CCCCCHHHHHHHhhhcCCceE
Q 011898 345 WLKPYTDEVLVELGQKGVKSL 365 (475)
Q Consensus 345 WL~P~t~d~L~~L~~~G~k~V 365 (475)
|.-++.++.++-+..-+..++
T Consensus 156 ~~~~t~~~~~~l~~~~~~~~v 176 (275)
T PRK09856 156 NVVCNANDVLHALALVPSPRL 176 (275)
T ss_pred cccCCHHHHHHHHHHcCCCcc
Confidence 555666666555555554554
No 128
>PLN02417 dihydrodipicolinate synthase
Probab=26.02 E-value=3.8e+02 Score=26.96 Aligned_cols=63 Identities=10% Similarity=0.072 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHH---HHCCCCEEEEEecCCcccccChHHHHHHHHH
Q 011898 175 QAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQN 241 (475)
Q Consensus 175 qa~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l---~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~ 241 (475)
+.+.++...+.....++|..| -+.+.++++++.. ++.|++-++++| |.|...|.....+.+.+
T Consensus 56 r~~~~~~~~~~~~~~~pvi~g--v~~~~t~~~i~~a~~a~~~Gadav~~~~--P~y~~~~~~~i~~~f~~ 121 (280)
T PLN02417 56 HIMLIGHTVNCFGGKIKVIGN--TGSNSTREAIHATEQGFAVGMHAALHIN--PYYGKTSQEGLIKHFET 121 (280)
T ss_pred HHHHHHHHHHHhCCCCcEEEE--CCCccHHHHHHHHHHHHHcCCCEEEEcC--CccCCCCHHHHHHHHHH
Confidence 333444434433334666655 4577889998865 467999888877 65665555444444443
No 129
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=26.00 E-value=1.4e+02 Score=26.41 Aligned_cols=29 Identities=34% Similarity=0.394 Sum_probs=22.7
Q ss_pred CCc-hHHHHHHHHHHHHHHHHhcCCCceEE
Q 011898 165 GSP-LRKITDEQAQALKTALEAKNLPVNVY 193 (475)
Q Consensus 165 gSP-L~~~T~~qa~~L~~~L~~~~~~~~V~ 193 (475)
||| -...|+..++.+.+.|.+.+.++++.
T Consensus 8 gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i 37 (152)
T PF03358_consen 8 GSPRKNSNTRKLAEAVAEQLEEAGAEVEVI 37 (152)
T ss_dssp SSSSTTSHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred CcCCCCCHHHHHHHHHHHHHHHcCCEEEEE
Confidence 477 78899999999999998876444444
No 130
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=25.96 E-value=3.6e+02 Score=27.02 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=32.9
Q ss_pred cCCCHHHH---HHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHHhccCCCCCEEEeccCCCChH
Q 011898 199 WYPFTEEA---VQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREG 265 (475)
Q Consensus 199 ~~P~ieda---l~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~ 265 (475)
+.|+.++- ++++..+|+++|+++++-...|.+ -.....+.+.+ ++.+++++++.....+
T Consensus 61 S~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgt--y~~a~~aa~~~------~~~~i~ViDS~~~s~g 122 (280)
T PF02645_consen 61 SQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGT--YNSARLAAKML------PDIKIHVIDSKSVSAG 122 (280)
T ss_dssp E---HHHHHHHHHHHHHTTTSEEEEEES-TTT-TH--HHHHHHHHHHH------TTTEEEEEE-SS-HHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhH--HHHHHHHHhhc------CcCEEEEEeCCCcchh
Confidence 67877664 556667899999999997655432 11222222222 4568999999876544
No 131
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=25.85 E-value=6.5e+02 Score=24.81 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEE
Q 011898 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVL 221 (475)
Q Consensus 171 ~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvl 221 (475)
+.+...+.+++.|.+.|..+.-...+..........+.++++.+.+.|++.
T Consensus 146 ~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~~~pd~v~~~ 196 (336)
T cd06360 146 FGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFVF 196 (336)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHhcCCCEEEEe
Confidence 677777888888887765433223334456788889999999999977653
No 132
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=25.76 E-value=5e+02 Score=25.94 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=40.2
Q ss_pred CHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHH
Q 011898 349 YTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAV 419 (475)
Q Consensus 349 ~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rvp~LNdsp~fI~aLadlV 419 (475)
-+++-++++++.|+..+++.... .+| ..++.+.++++|+. ...+=.++.++.-++.+++..
T Consensus 103 G~e~f~~~~~~aGvdgviipDlp--------~ee-~~~~~~~~~~~gl~-~i~lv~P~T~~eri~~i~~~~ 163 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADLP--------LEE-SGDLVEAAKKHGVK-PIFLVAPNADDERLKQIAEKS 163 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCCC--------hHH-HHHHHHHHHHCCCc-EEEEECCCCCHHHHHHHHHhC
Confidence 56788999999999887776433 223 23567778899986 333335666666666665543
No 133
>PRK06886 hypothetical protein; Validated
Probab=25.73 E-value=7.8e+02 Score=25.66 Aligned_cols=61 Identities=13% Similarity=0.231 Sum_probs=33.5
Q ss_pred cCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEccc
Q 011898 304 AGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVS 371 (475)
Q Consensus 304 ~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPig 371 (475)
.+|+....++..++...+ . |+..++..+--..++. .=..+..+.++.+++.|+ +|+..|.+
T Consensus 185 ~~~~~~~~le~l~~~~~~-~---Gl~grV~~sH~~~L~~--~~~~~~~~~i~~La~agi-~Vv~~P~s 245 (329)
T PRK06886 185 FNTPKEKETEQLCDKTIE-H---GMQGRVVAIHGISIGA--HSKEYRYRLYQKMREADM-MVIACPMA 245 (329)
T ss_pred CCchhHHHHHHHHHHHHH-c---CCCCCEEEEEeccccC--cChhhHHHHHHHHHHcCC-eEEECchh
Confidence 355654445444444332 2 6654544433332221 112467778888888886 77777775
No 134
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=25.70 E-value=4.5e+02 Score=23.30 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=39.3
Q ss_pred ccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHH----------HHHHHHHHHHHhccCCCCCEEEeccCCCChHH
Q 011898 198 YWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGS----------SIRVLQNIFREDAYLSRLPVSIIRSWYQREGY 266 (475)
Q Consensus 198 Y~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS----------~~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~y 266 (475)
...|.+.-.++-+...|+..++++=|||+++.....- ..+.+.+.+++ .-.+|-.|+.+..+
T Consensus 29 ~~D~T~~~~~~~a~~~gyg~~~i~NLf~~~~t~p~~l~~~~~~~~~~N~~~i~~~~~~-------~~~vv~AWG~~~~~ 100 (136)
T PF07799_consen 29 KDDPTIRRCINFARRWGYGGVIIVNLFPQRSTDPKDLKKAPDPIGPENDEHIREALKE-------ADDVVLAWGNHGKL 100 (136)
T ss_pred CCCHHHHHHHHHHhhcCCCeEEEEEecccccCCHHHHHhccCcccHhHHHHHHHHHhc-------cCcEEEEeCCCccc
Confidence 3456666666667778999999999999988533221 11223333322 13578889997663
No 135
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=25.55 E-value=3.8e+02 Score=27.17 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHH---HHCCCCEEEEEecCCcccccChHHHHHHHHHHH
Q 011898 177 QALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIF 243 (475)
Q Consensus 177 ~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l---~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~ 243 (475)
+.++...+.....++|..| -+...++|+++.. .+.|++-++++| |.|...+-....+.+.+..
T Consensus 57 ~l~~~~~~~~~g~~pvi~g--v~~~~t~~ai~~a~~A~~~Gad~v~v~p--P~y~~~~~~~l~~~f~~ia 122 (294)
T TIGR02313 57 QAIENAIDQIAGRIPFAPG--TGALNHDETLELTKFAEEAGADAAMVIV--PYYNKPNQEALYDHFAEVA 122 (294)
T ss_pred HHHHHHHHHhCCCCcEEEE--CCcchHHHHHHHHHHHHHcCCCEEEEcC--ccCCCCCHHHHHHHHHHHH
Confidence 3333334333335667665 3457888888754 456999998888 6666655444444444433
No 136
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=25.47 E-value=8.3e+02 Score=25.92 Aligned_cols=130 Identities=22% Similarity=0.230 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCC
Q 011898 264 EGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPV 343 (475)
Q Consensus 264 p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~ 343 (475)
..|++++.+.|+.... . ...+.-||-.-|.|.-. -+.++.+..+.|.+.+ ++....+++.-.. |.
T Consensus 47 ~~Y~~~L~~Ei~~~~~-~--~~~i~~iy~GGGTps~l-------~~~~l~~ll~~i~~~~---~~~~~~eit~E~~--P~ 111 (400)
T PRK07379 47 EEYVEVLCQEIAITPS-F--GQPLQTVFFGGGTPSLL-------SVEQLERILTTLDQRF---GIAPDAEISLEID--PG 111 (400)
T ss_pred HHHHHHHHHHHHHhhc-c--CCceeEEEECCCccccC-------CHHHHHHHHHHHHHhC---CCCCCCEEEEEeC--CC
Confidence 4578777777765321 1 12345566666666321 2467777777787765 4433345555442 21
Q ss_pred CCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHH-----HHHHHHHHHHHHcCCceE--E-EcCCCCCCHHHH
Q 011898 344 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLE-----EIDMEYKELALESGIENW--G-RVPALNCTPSFI 412 (475)
Q Consensus 344 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~-----EIDiE~re~a~e~G~~~~--~-rvp~LNdsp~fI 412 (475)
--+++.|+.|.+.|+.+|-+=.=+|-.+.+..+. +--.+.-+.++++|+.++ . ....++.+.+-+
T Consensus 112 ----~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~ 184 (400)
T PRK07379 112 ----TFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDW 184 (400)
T ss_pred ----cCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHH
Confidence 1356888999888988877766566666665442 122344566678888643 2 334556555433
No 137
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=25.47 E-value=1.2e+02 Score=31.20 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=34.9
Q ss_pred CCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCc
Q 011898 347 KPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIE 397 (475)
Q Consensus 347 ~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~ 397 (475)
.+.+.++++++.+.|+|.++|+.=||- +.+ ..+.++.+++.|+.
T Consensus 75 ~~~v~~~l~e~~~~gvk~avI~s~Gf~------~~~-~~~l~~~a~~~gir 118 (291)
T PRK05678 75 PPFAADAILEAIDAGIDLIVCITEGIP------VLD-MLEVKAYLERKKTR 118 (291)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCC------HHH-HHHHHHHHHHcCCE
Confidence 367899999999999999999999984 111 23678888898873
No 138
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=25.13 E-value=4.7e+02 Score=26.50 Aligned_cols=57 Identities=11% Similarity=-0.019 Sum_probs=36.0
Q ss_pred HHhcCCCceEEEeeeccCCCHHHHHHHH---HHCCCCEEEEEecCCcccccChHHHHHHHHHHH
Q 011898 183 LEAKNLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIF 243 (475)
Q Consensus 183 L~~~~~~~~V~~amrY~~P~iedal~~l---~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~ 243 (475)
.+.....++|.+|- +...++++++.. ++.|++-++++| |.|...|.....+.+.+..
T Consensus 64 ~~~~~~~~pvi~gv--~~~~t~~~i~la~~a~~~Gad~v~v~~--P~y~~~~~~~i~~yf~~v~ 123 (290)
T TIGR00683 64 KDEAKDQIALIAQV--GSVNLKEAVELGKYATELGYDCLSAVT--PFYYKFSFPEIKHYYDTII 123 (290)
T ss_pred HHHhCCCCcEEEec--CCCCHHHHHHHHHHHHHhCCCEEEEeC--CcCCCCCHHHHHHHHHHHH
Confidence 33333356666663 356788888754 457999888877 7777776555544444443
No 139
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=24.66 E-value=3.5e+02 Score=26.39 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=26.0
Q ss_pred HHHHHHHcCCce---EEEcCCCCCCHHHHHHHHHHHHH
Q 011898 387 YKELALESGIEN---WGRVPALNCTPSFITDLADAVIE 421 (475)
Q Consensus 387 ~re~a~e~G~~~---~~rvp~LNdsp~fI~aLadlV~e 421 (475)
.-+...+.|..- ...+|-+||+++-++.+++.+.+
T Consensus 119 nl~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~ 156 (213)
T PRK10076 119 NLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIP 156 (213)
T ss_pred HHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334445777653 44578889999999999999976
No 140
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=23.90 E-value=1.1e+02 Score=34.07 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEEecC
Q 011898 176 AQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLY 224 (475)
Q Consensus 176 a~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLy 224 (475)
++.+.+.+.+.|.++.|.-| .=.+|+++|-++.+.+-+.++|++||==
T Consensus 323 g~g~~~~f~~~Ga~~vi~gg-qt~nPS~~dll~ai~~~~a~~V~iLPNn 370 (530)
T TIGR03599 323 GEGIAELFKSLGADVVIEGG-QTMNPSTEDILKAIEKVNAKNVFVLPNN 370 (530)
T ss_pred CchHHHHHHHCCCCEEEeCC-CCCCCCHHHHHHHHHhCCCCeEEEecCC
Confidence 34567777777766544333 4458999999999999999999998853
No 141
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.69 E-value=7.3e+02 Score=24.95 Aligned_cols=105 Identities=24% Similarity=0.368 Sum_probs=56.3
Q ss_pred EEEEEEccCCCCCcCcHHHHHHhhc-CCCCcccC--ChhhhhhhhHHH--HHHHhccChhhHHhhhccCCCCchHHHHHH
Q 011898 100 VGVLLLNLGGPDTLHDVQPFLFNLF-ADPDIIRL--PRLFRFLQWPLA--KLISVVRAPKSKEGYAAIGGGSPLRKITDE 174 (475)
Q Consensus 100 ~aVLLlNlG~P~s~~dV~~FL~~~l-~D~~Vi~l--P~~~~~~~~~L~--~~Ia~~R~~k~~~~Y~~IGggSPL~~~T~~ 174 (475)
-=|.-+..|-|+-.. -.+++..+. .+-++|+| | +-.|++ +.|.. ...+.+.+|--+... -+
T Consensus 13 ~li~yi~aG~P~~~~-~~~~~~~l~~~Gad~iElGiP-----fSDP~aDGpvIq~-------a~~~AL~~G~~~~~~-~~ 78 (258)
T PRK13111 13 ALIPYITAGDPDLET-SLEIIKALVEAGADIIELGIP-----FSDPVADGPVIQA-------ASLRALAAGVTLADV-FE 78 (258)
T ss_pred cEEEEEeCCCCCHHH-HHHHHHHHHHCCCCEEEECCC-----CCCCcccCHHHHH-------HHHHHHHcCCCHHHH-HH
Confidence 345566677776322 222333332 34577765 5 345554 34432 234445333323222 22
Q ss_pred HHHHHHHHHHhcCCCceEEEeeeccCC----CHHHHHHHHHHCCCCEEEEEec
Q 011898 175 QAQALKTALEAKNLPVNVYVGMRYWYP----FTEEAVQQIKRDRITRLVVLPL 223 (475)
Q Consensus 175 qa~~L~~~L~~~~~~~~V~~amrY~~P----~iedal~~l~~~Gv~rIvvlPL 223 (475)
+.+++ ++...+.++ +-|.|++| .+++-++++++.|++-+++--|
T Consensus 79 ~~~~~----r~~~~~~p~-vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDL 126 (258)
T PRK13111 79 LVREI----REKDPTIPI-VLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDL 126 (258)
T ss_pred HHHHH----HhcCCCCCE-EEEecccHHhhcCHHHHHHHHHHcCCcEEEECCC
Confidence 23333 323345555 48999999 5557788999999998887433
No 142
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=23.62 E-value=1e+02 Score=36.73 Aligned_cols=53 Identities=28% Similarity=0.389 Sum_probs=40.5
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCc
Q 011898 333 TLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIE 397 (475)
Q Consensus 333 ~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~ 397 (475)
.+.|..-+|-..=+.|++.++++.|.+.|+|-+++ +-||.|| ++.+|+++|+.
T Consensus 535 dl~~lGl~g~~Dppr~~v~~aI~~l~~AGI~v~Mi-----TGD~~~T-------A~aIa~~~Gi~ 587 (917)
T COG0474 535 DLVFLGLTGIEDPPREDVKEAIEELREAGIKVWMI-----TGDHVET-------AIAIAKECGIE 587 (917)
T ss_pred cceeehhhhccCCCCccHHHHHHHHHHCCCcEEEE-----CCCCHHH-------HHHHHHHcCCC
Confidence 35665544544446899999999999999876655 7899999 77788888853
No 143
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=23.59 E-value=5.1e+02 Score=22.75 Aligned_cols=105 Identities=16% Similarity=0.130 Sum_probs=56.9
Q ss_pred CCChHH-HHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccccccchhhHH--
Q 011898 305 GDPYRD-QMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLE-- 381 (475)
Q Consensus 305 GDpY~~-q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~-- 381 (475)
|||+.. .+.+.++.+.+.. ..+.+.+++.... | +++.++.|.+.|...+.+---++-.+..+-+.
T Consensus 53 gep~~~~~~~~~i~~~~~~~------~~~~~~i~T~~~~--~----~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~ 120 (204)
T cd01335 53 GEPLLYPELAELLRRLKKEL------PGFEISIETNGTL--L----TEELLKELKELGLDGVGVSLDSGDEEVADKIRGS 120 (204)
T ss_pred CcCCccHhHHHHHHHHHhhC------CCceEEEEcCccc--C----CHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcC
Confidence 677632 4444555554442 2456777775431 2 57888888887876665544344444444332
Q ss_pred ----HHHHHHHHHHHHcCCc-eEEEcCCCCCC--HHHHHHHHHHHHH
Q 011898 382 ----EIDMEYKELALESGIE-NWGRVPALNCT--PSFITDLADAVIE 421 (475)
Q Consensus 382 ----EIDiE~re~a~e~G~~-~~~rvp~LNds--p~fI~aLadlV~e 421 (475)
+--++.-+.+.+.|+. ....+..++.. ..+.+.+..+...
T Consensus 121 ~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~ 167 (204)
T cd01335 121 GESFKERLEALKELREAGLGLSTTLLVGLGDEDEEDDLEELELLAEF 167 (204)
T ss_pred CcCHHHHHHHHHHHHHcCCCceEEEEEecCCChhHHHHHHHHHHHhh
Confidence 2334444555554542 45555555555 4666666555443
No 144
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=23.37 E-value=5e+02 Score=26.07 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHHHHHHHHHHHhccCCCC-CeEEEEeCCCCCCC
Q 011898 266 YVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINN-DHTLAYQSRVGPVK 344 (475)
Q Consensus 266 yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~-~~~lafQSr~Gp~~ 344 (475)
.-.++.+||.++++-........||+|.-. .++.| .|-+.+.+.+. +.|++. .+.+-++|
T Consensus 62 ps~~l~~Rl~~A~~LYk~gk~~~ilvSGg~--------~~~~~-~Ea~~M~~yLi----~~GVp~e~Ii~e~~s------ 122 (239)
T PRK10834 62 INQYYRYRIQGAINAYNSGKVNYLLLSGDN--------ALQSY-NEPMTMRKDLI----AAGVDPSDIVLDYAG------ 122 (239)
T ss_pred cCHHHHHHHHHHHHHHHhCCCCEEEEeCCC--------CCCCC-CHHHHHHHHHH----HcCCCHHHEEecCCC------
Confidence 334556788877763322222468888632 12334 33333333333 338863 46666666
Q ss_pred CCCCCHHHHHHHhhhc-CCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEE
Q 011898 345 WLKPYTDEVLVELGQK-GVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWG 400 (475)
Q Consensus 345 WL~P~t~d~L~~L~~~-G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~ 400 (475)
=+|.|.+....+- |.++++||.=+| |++- +.-+|++.|++.+.
T Consensus 123 ---~nT~en~~~a~~i~~~~~~iIVTq~f---Hm~R-------A~~ia~~~Gi~~~~ 166 (239)
T PRK10834 123 ---FRTLDSIVRTRKVFDTNDFIIITQRF---HCER-------ALFIALHMGIQAQC 166 (239)
T ss_pred ---CCHHHHHHHHHHHhCCCCEEEECCHH---HHHH-------HHHHHHHcCCceEE
Confidence 3666766665543 667788887666 6653 67788999996443
No 145
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.37 E-value=7e+02 Score=26.99 Aligned_cols=77 Identities=12% Similarity=0.062 Sum_probs=40.9
Q ss_pred EEEEecCCCchhhhhccCCCh-HHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEE
Q 011898 288 MIFFSAHGVPVSYVEKAGDPY-RDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLL 366 (475)
Q Consensus 288 ~LLFSaHglP~~~v~~~GDpY-~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~Vv 366 (475)
.|-+..-|.-.++.+.-+-+| ..+..+.++.+.+... |+ .+...|.- |..-...=+.+++++-+.+.+...+-
T Consensus 260 ~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~p--gi--~i~td~Iv--GfPgET~edf~~tl~~~~~~~~~~~~ 333 (445)
T PRK14340 260 HIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIP--GV--TLSTDLIA--GFCGETEEDHRATLSLMEEVRFDSAF 333 (445)
T ss_pred eEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC--CC--EEeccEEE--ECCCCCHHHHHHHHHHHHhcCCCEEe
Confidence 344544443333333334456 5667777777766531 33 22333322 52223444666677777777888877
Q ss_pred EEcc
Q 011898 367 AIPV 370 (475)
Q Consensus 367 VvPi 370 (475)
++++
T Consensus 334 ~f~~ 337 (445)
T PRK14340 334 MFYY 337 (445)
T ss_pred eEEe
Confidence 7765
No 146
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.30 E-value=4.1e+02 Score=27.99 Aligned_cols=176 Identities=15% Similarity=0.199 Sum_probs=0.0
Q ss_pred eeeeee---ccccccCCCCcCCCce--eeeccceeecCCcccccccccc-------CCCcEEEEEEccCCCC-CcCcHHH
Q 011898 52 ALAYTV---RESYLCGPVQRRNPAG--ICAAGVATYGENAVEYESHAQA-------AEDKVGVLLLNLGGPD-TLHDVQP 118 (475)
Q Consensus 52 ~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~k~aVLLlNlG~P~-s~~dV~~ 118 (475)
.+.+.. ....+|=-+|-.=..| ||.+|...+.-|....|--.+. ..+.+.|++|-||.|- +++.|..
T Consensus 94 tV~i~~~~~~~~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N~d~V~~ 173 (342)
T PRK14465 94 AVWIPSGDGGRKTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHNYFNVIR 173 (342)
T ss_pred EEEeEecCCCceEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhhHHHHHH
Q ss_pred HHHhhcCCCCcccCChhhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHHHHHHHHHHHhcCCCceEEEeeec
Q 011898 119 FLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRY 198 (475)
Q Consensus 119 FL~~~l~D~~Vi~lP~~~~~~~~~L~~~Ia~~R~~k~~~~Y~~IGggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY 198 (475)
.+. ++.|+.-..+. ...+...|--....+.+.+++ ...+.+|...
T Consensus 174 ~~~-~l~~~~~~~~~-------------------------------~r~itvST~G~~~~i~~l~~~---~~~~~LaiSL 218 (342)
T PRK14465 174 AAS-ILHDPDAFNLG-------------------------------AKRITISTSGVVNGIRRFIEN---KEPYNFAISL 218 (342)
T ss_pred HHH-HHhChhhhcCC-------------------------------CCeEEEeCCCchHHHHHHHhh---ccCceEEEEe
Q ss_pred cCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHHhccCCCCCEEEeccCCCChHHHHHHHHHHHH
Q 011898 199 WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276 (475)
Q Consensus 199 ~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~yI~ala~~I~~ 276 (475)
-.|.-+ .|--++|.-+.|+- ...++.+.+..++.+..--+++-+|+.+-+.+.-++++++.++.
T Consensus 219 hA~~~e-----------~R~~l~Pi~~~~~l---e~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~ 282 (342)
T PRK14465 219 NHPDPN-----------GRLQIMDIEEKFPL---EELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARS 282 (342)
T ss_pred cCCChh-----------hcceEeeccccCCH---HHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhh
No 147
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=23.09 E-value=4e+02 Score=25.73 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=15.1
Q ss_pred ceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEEc
Q 011898 363 KSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRV 402 (475)
Q Consensus 363 k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~rv 402 (475)
.+|+++|.+-... .+.-.++.+.+.+.|..+...+
T Consensus 30 ~~i~~iptA~~~~-----~~~~~~~~~~~~~lG~~~v~~~ 64 (217)
T cd03145 30 ARIVVIPAASEEP-----AEVGEEYRDVFERLGAREVEVL 64 (217)
T ss_pred CcEEEEeCCCcCh-----hHHHHHHHHHHHHcCCceeEEe
Confidence 4555555554331 1112234444555555444333
No 148
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=23.08 E-value=7.7e+02 Score=24.81 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEeeeccCCC--------HHHHHHHHHHCCCCEEEEE
Q 011898 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPF--------TEEAVQQIKRDRITRLVVL 221 (475)
Q Consensus 171 ~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~--------iedal~~l~~~Gv~rIvvl 221 (475)
+..+++....+...+.|..+.+.+.|.++.|+ +.+.++++.+.|+++|.+-
T Consensus 111 ~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~ 169 (274)
T cd07938 111 ESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISLG 169 (274)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 33344444444555566666666666665443 4456677888899876543
No 149
>PRK13463 phosphatase PhoE; Provisional
Probab=22.69 E-value=5.5e+02 Score=24.20 Aligned_cols=124 Identities=13% Similarity=0.082 Sum_probs=59.1
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCHHH--HHHHHHHC-CCCEEEEEec-----CCcccccChHHHH
Q 011898 165 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEE--AVQQIKRD-RITRLVVLPL-----YPQFSISTTGSSI 236 (475)
Q Consensus 165 gSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~ied--al~~l~~~-Gv~rIvvlPL-----yPqYS~sTtgS~~ 236 (475)
.+||...-.+||+++.+.|.... +. .-|+.|+... +.+-+.+. ++. +.+-+- |..+-..+.....
T Consensus 26 d~~Lt~~G~~Qa~~~~~~l~~~~--~~----~i~sSpl~Ra~qTA~~i~~~~~~~-~~~~~~l~E~~~G~~eG~~~~e~~ 98 (203)
T PRK13463 26 NSALTENGILQAKQLGERMKDLS--IH----AIYSSPSERTLHTAELIKGERDIP-IIADEHFYEINMGIWEGQTIDDIE 98 (203)
T ss_pred CCCcCHHHHHHHHHHHHHhcCCC--CC----EEEECCcHHHHHHHHHHHhcCCCC-ceECcCceeCCCCccCCCcHHHHh
Confidence 48999999999999999886432 21 2356777543 44444332 322 222221 2323222322222
Q ss_pred HHHHHHHHHhccCCCCCEEEeccCCCChHHHHHHHHHHHHHHhhcC-CCCceEEEEecCCCchhhh
Q 011898 237 RVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQ-KPEEVMIFFSAHGVPVSYV 301 (475)
Q Consensus 237 ~~l~~~~~~~~~~~~~~v~~I~~~~~~p~yI~ala~~I~~~l~~~~-~~~~~~LLFSaHglP~~~v 301 (475)
+...+.+......+ ..+-.+.+ +.+ +.+.+++.++++... ...+-.+|++.||-..+.+
T Consensus 99 ~~~p~~~~~~~~~~---~~~~~~~g--Es~-~~~~~R~~~~l~~i~~~~~~~~vlvVsHg~~ir~~ 158 (203)
T PRK13463 99 RQYPDDIQLFWNEP---HLFQSTSG--ENF-EAVHKRVIEGMQLLLEKHKGESILIVSHAAAAKLL 158 (203)
T ss_pred hhCHHHHHHHHhCh---hccCCCCC--eEH-HHHHHHHHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 22222222211111 11111122 222 345666666665431 1112247789999988866
No 150
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=22.65 E-value=2.7e+02 Score=29.68 Aligned_cols=67 Identities=28% Similarity=0.385 Sum_probs=46.2
Q ss_pred hhhHHhhhccCCCCchHHHHHHHHHHHHHHHHhcCCCceEEEeeeccCC----CHHHHHHHH---HHCCCCEEEEEecCC
Q 011898 153 PKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYP----FTEEAVQQI---KRDRITRLVVLPLYP 225 (475)
Q Consensus 153 ~k~~~~Y~~IGggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P----~iedal~~l---~~~Gv~rIvvlPLyP 225 (475)
..+.+.|..||--.||.+ |+.|++.|. .+.++|+=|.=..| -+..|+.|. +.+|++|++-=.=.-
T Consensus 66 ~Ev~e~Y~~~gRPTPL~R-----A~~LE~~L~---tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~rl~TETGAG 137 (432)
T COG1350 66 EEVREAYLQIGRPTPLIR-----AKNLEEALG---TPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETGAG 137 (432)
T ss_pred HHHHHHHHHhCCCCchhh-----hhhHHHHhC---CCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCceeeecccCCc
Confidence 345689999998899987 556777774 46788887743333 355666664 568999988655555
Q ss_pred cc
Q 011898 226 QF 227 (475)
Q Consensus 226 qY 227 (475)
|+
T Consensus 138 QW 139 (432)
T COG1350 138 QW 139 (432)
T ss_pred hH
Confidence 54
No 151
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=22.62 E-value=1.4e+02 Score=28.62 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=48.4
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCceEEEee---eccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHH
Q 011898 166 SPLRKITDEQAQALKTALEAKNLPVNVYVGM---RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNI 242 (475)
Q Consensus 166 SPL~~~T~~qa~~L~~~L~~~~~~~~V~~am---rY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~ 242 (475)
+|-..|+...++++--. -+-.|| -+.+|.+.+.|.++.+ +++++-..|-.+.-+...-...+-+.
T Consensus 19 rpg~~~~~~~aR~l~~~--------~iNLGfsG~~~le~~~a~~ia~~~a----~~~~ld~~~N~~~~~~~~~~~~fv~~ 86 (178)
T PF14606_consen 19 RPGMAYPAILARRLGLD--------VINLGFSGNGKLEPEVADLIAEIDA----DLIVLDCGPNMSPEEFRERLDGFVKT 86 (178)
T ss_dssp SGGGSHHHHHHHHHT-E--------EEEEE-TCCCS--HHHHHHHHHS------SEEEEEESHHCCTTTHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHcCCC--------eEeeeecCccccCHHHHHHHhcCCC----CEEEEEeecCCCHHHHHHHHHHHHHH
Confidence 69999998877766321 244555 7888999888888743 57888888875555544444444444
Q ss_pred HHHhccCCCCCEEEeccCCC
Q 011898 243 FREDAYLSRLPVSIIRSWYQ 262 (475)
Q Consensus 243 ~~~~~~~~~~~v~~I~~~~~ 262 (475)
+++ .+|+.|+-+|.+.+.
T Consensus 87 iR~--~hP~tPIllv~~~~~ 104 (178)
T PF14606_consen 87 IRE--AHPDTPILLVSPIPY 104 (178)
T ss_dssp HHT--T-SSS-EEEEE----
T ss_pred HHH--hCCCCCEEEEecCCc
Confidence 444 457788888885443
No 152
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=22.45 E-value=3.2e+02 Score=27.46 Aligned_cols=67 Identities=21% Similarity=0.183 Sum_probs=42.5
Q ss_pred CCHHHHHHH---hhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHc-CCceEEE-cCC---CCCCHHHHHHHHH
Q 011898 348 PYTDEVLVE---LGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALES-GIENWGR-VPA---LNCTPSFITDLAD 417 (475)
Q Consensus 348 P~t~d~L~~---L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~-G~~~~~r-vp~---LNdsp~fI~aLad 417 (475)
.+|+++++. ..+.|+..++++||.|+.-.- .||-.-++++++.. +..-+.| .|. .+-+++++..|++
T Consensus 80 ~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~---~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 80 LNLKESQELAKHAEELGYDAISAITPFYYKFSF---EEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCH---HHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 567776664 466799999999998876322 44444578888766 5543433 342 3456777766654
No 153
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=22.32 E-value=3e+02 Score=29.05 Aligned_cols=72 Identities=25% Similarity=0.305 Sum_probs=47.3
Q ss_pred CCHHHHHHHhhhcCCceEEEE-cccccccchhhHHHHHHHHHHHHHHcCCce----EEE---cCCCCCCHHHHHHHHHHH
Q 011898 348 PYTDEVLVELGQKGVKSLLAI-PVSFVSEHIETLEEIDMEYKELALESGIEN----WGR---VPALNCTPSFITDLADAV 419 (475)
Q Consensus 348 P~t~d~L~~L~~~G~k~VvVv-PigFvsDhlETL~EIDiE~re~a~e~G~~~----~~r---vp~LNdsp~fI~aLadlV 419 (475)
|.|.|.+--..+-|+..|+|+ -=-=..|.=|-|+...+|.+++..++|..- +.+ .-+|..++.|.+.+.++.
T Consensus 114 PqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm 193 (394)
T COG0050 114 PQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELM 193 (394)
T ss_pred CcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHH
Confidence 788887766666688776654 223334567788889999999999998751 111 234566666766555544
No 154
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=22.29 E-value=3.1e+02 Score=29.22 Aligned_cols=77 Identities=22% Similarity=0.193 Sum_probs=55.9
Q ss_pred EEEeeeccCCCHHHHHHHHHHCCCCEEEEEecCCcccccChHHHHHHHHHHHHHhccCCCCCEEEeccCCCChHHHHHHH
Q 011898 192 VYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMA 271 (475)
Q Consensus 192 V~~amrY~~P~iedal~~l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~yI~ala 271 (475)
|.+| -.|.|.--++.|.+.|+++|++...|=.. |....+.+.+.. ++-+.++-+.-+.|.--+-=+
T Consensus 35 Vpfg---n~pmI~hqieal~nsGi~~I~la~~y~s~------sl~~~~~k~y~~-----~lgVei~~s~eteplgtaGpl 100 (371)
T KOG1322|consen 35 VPFG---NKPMILHQIEALINSGITKIVLATQYNSE------SLNRHLSKAYGK-----ELGVEILASTETEPLGTAGPL 100 (371)
T ss_pred cccC---cchhhHHHHHHHHhCCCcEEEEEEecCcH------HHHHHHHHHhhh-----ccceEEEEEeccCCCcccchH
Confidence 5666 67999999999999999999999987532 244445555432 233777777777777777667
Q ss_pred HHHHHHHhhcC
Q 011898 272 DLIQKELGKFQ 282 (475)
Q Consensus 272 ~~I~~~l~~~~ 282 (475)
+.+++.|..+.
T Consensus 101 ~laR~~L~~~~ 111 (371)
T KOG1322|consen 101 ALARDFLWVFE 111 (371)
T ss_pred HHHHHHhhhcC
Confidence 88888887663
No 155
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=22.21 E-value=4.3e+02 Score=26.72 Aligned_cols=51 Identities=12% Similarity=0.082 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHCCCCEEEEE
Q 011898 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVL 221 (475)
Q Consensus 171 ~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~Gv~rIvvl 221 (475)
+.+.+++.+++.|.+.|..+.....+....+.....+.++++.|++-|++.
T Consensus 150 ~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~ 200 (347)
T cd06335 150 WGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIV 200 (347)
T ss_pred hhhhHHHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEE
Confidence 445555666666655553332222333445556666666666666655444
No 156
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=22.16 E-value=4.5e+02 Score=26.32 Aligned_cols=70 Identities=21% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEeeeccCCCHHHHHHHHHHC---CCCEEEEEecCCcccccChHHHHHHHHHHHHH
Q 011898 172 TDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRD---RITRLVVLPLYPQFSISTTGSSIRVLQNIFRE 245 (475)
Q Consensus 172 T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~l~~~---Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~~~~ 245 (475)
.++..+.++...+.....++|..|- +..+++++++..+.. |++-++++| |.|-..+-....+.+.+....
T Consensus 50 ~~Er~~~~~~~~~~~~~~~~vi~gv--~~~s~~~~i~~a~~a~~~Gad~v~v~p--P~y~~~~~~~i~~~~~~i~~~ 122 (285)
T TIGR00674 50 HEEHKKVIEFVVDLVNGRVPVIAGT--GSNATEEAISLTKFAEDVGADGFLVVT--PYYNKPTQEGLYQHFKAIAEE 122 (285)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEeC--CCccHHHHHHHHHHHHHcCCCEEEEcC--CcCCCCCHHHHHHHHHHHHhc
No 157
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=22.02 E-value=2.2e+02 Score=30.28 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=40.7
Q ss_pred CeEEEEeCC--CCC--CCCCCCCHHHHHHHhhhcCCceEEEEccc-ccccchh-hHHHHHHHHHHHHHHcCCc
Q 011898 331 DHTLAYQSR--VGP--VKWLKPYTDEVLVELGQKGVKSLLAIPVS-FVSEHIE-TLEEIDMEYKELALESGIE 397 (475)
Q Consensus 331 ~~~lafQSr--~Gp--~~WL~P~t~d~L~~L~~~G~k~VvVvPig-FvsDhlE-TL~EIDiE~re~a~e~G~~ 397 (475)
-|.++||.+ +|. .+| .+..+.++.+++.|++.|=+...- |--|.-+ .-.+.-.+.++..++.|++
T Consensus 13 ~w~~~~~~~~~~g~~~~~~--~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~ 83 (382)
T TIGR02631 13 LWTVGWVGRDPFGDATRTA--LDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLK 83 (382)
T ss_pred eeccCCCCCCCCCCCCCCC--cCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCe
Confidence 488899886 554 356 477899999999999988764211 1011111 0111123567788899985
No 158
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=21.94 E-value=3.6e+02 Score=27.87 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=40.9
Q ss_pred HHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCc---eEEEcCCCCCCHHHHHHHHHHHHH
Q 011898 350 TDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIE---NWGRVPALNCTPSFITDLADAVIE 421 (475)
Q Consensus 350 t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~---~~~rvp~LNdsp~fI~aLadlV~e 421 (475)
|++.++.|++.|.+.++++- -||...+++--.++-+.+.++|+. +.+..+-.||++.-+..|.+.+.+
T Consensus 192 t~el~~~L~~~~~~~~~~~h----~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~ 262 (321)
T TIGR03821 192 TSGLCDLLANSRLQTVLVVH----INHANEIDAEVADALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFD 262 (321)
T ss_pred hHHHHHHHHhcCCcEEEEee----CCChHhCcHHHHHHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHH
Confidence 35666667666655443332 255544555555566666788875 333455568888777777766654
No 159
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=21.80 E-value=2.4e+02 Score=29.29 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCC---eEEEEeCCCCCCCCCC---CCH--HHHHHHhhhcCCceEEEEcccccccc
Q 011898 309 RDQMEECIYLIMQRLKDRGINND---HTLAYQSRVGPVKWLK---PYT--DEVLVELGQKGVKSLLAIPVSFVSEH 376 (475)
Q Consensus 309 ~~q~~~t~~~v~e~L~~~g~~~~---~~lafQSr~Gp~~WL~---P~t--~d~L~~L~~~G~k~VvVvPigFvsDh 376 (475)
.++|.+.++.+.++ +++.+ ...-|+...+.-.|=+ |+- .+.+++|.++|+|=++.+-|....+.
T Consensus 23 ~~~v~~~~~~~r~~----~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~ 94 (339)
T cd06602 23 VDEVKEVVENMRAA----GIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANE 94 (339)
T ss_pred HHHHHHHHHHHHHh----CCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCc
Confidence 45555555555443 66432 2334554433222222 666 99999999999998888888777664
No 160
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=21.76 E-value=9.5e+02 Score=25.27 Aligned_cols=107 Identities=16% Similarity=0.263 Sum_probs=57.4
Q ss_pred CCCh--HHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccccccch-h---
Q 011898 305 GDPY--RDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHI-E--- 378 (475)
Q Consensus 305 GDpY--~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhl-E--- 378 (475)
|+|- .+.+.+..+.+.+.-. .|++ .-.++. |-.|.. +.+++|++++..-.+.+.+-=..|.. .
T Consensus 165 GEPLln~d~v~~~l~~l~~~~g-~~i~-~~~iti-sT~G~~--------~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~ 233 (355)
T TIGR00048 165 GEPLLNLNEVVKAMEIMNDDFG-LGIS-KRRITI-STSGVV--------PKIDILADKMLQVALAISLHAPNDELRSSLM 233 (355)
T ss_pred CchhhCHHHHHHHHHHhhcccc-cCcC-CCeEEE-ECCCch--------HHHHHHHHhCCCcEEEEEeCCCCHHHHHHhc
Confidence 5664 3456666666654320 1332 223444 445521 35677776665423334442222110 0
Q ss_pred ------hHHHHHHHHHHHHHHcCCc---eEEEcCCCCCCHHHHHHHHHHHHHH
Q 011898 379 ------TLEEIDMEYKELALESGIE---NWGRVPALNCTPSFITDLADAVIEA 422 (475)
Q Consensus 379 ------TL~EIDiE~re~a~e~G~~---~~~rvp~LNdsp~fI~aLadlV~e~ 422 (475)
.+.++-...++..++.|.+ +|..+|-+||+++.++.|++++...
T Consensus 234 p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l 286 (355)
T TIGR00048 234 PINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGT 286 (355)
T ss_pred CcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 1222222334455566654 6888999999999999999999863
No 161
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=21.66 E-value=1.2e+02 Score=33.43 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceE
Q 011898 346 LKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENW 399 (475)
Q Consensus 346 L~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~ 399 (475)
+.|.+.++|++|.++|++++.++. .|+-++ .+..+++.|+.++
T Consensus 363 l~~~~~e~i~~L~~~Gi~~v~vvT----gd~~~~-------a~~i~~~lgi~~~ 405 (536)
T TIGR01512 363 PRPDAAEAIAELKALGIEKVVMLT----GDRRAV-------AERVARELGIDEV 405 (536)
T ss_pred chHHHHHHHHHHHHcCCCcEEEEc----CCCHHH-------HHHHHHHcCChhh
Confidence 579999999999999986777765 566665 5666777777654
No 162
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=21.63 E-value=2.2e+02 Score=27.27 Aligned_cols=102 Identities=17% Similarity=0.110 Sum_probs=64.0
Q ss_pred CCCHHHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHH---HHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHHc
Q 011898 347 KPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEY---KELALESGIENWGRVPALNCTPSFITDLADAVIEAL 423 (475)
Q Consensus 347 ~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~---re~a~e~G~~~~~rvp~LNdsp~fI~aLadlV~e~l 423 (475)
+|...-.++.|.++|.+-.+ -|..-||--..|-.... ++++++.|++ +..-+ .+...|.+.++.+-.+
T Consensus 8 aPCs~~~~~~L~~~g~~vt~----~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~-~i~~~--Y~~~~w~~~v~~~e~e-- 78 (176)
T PF02677_consen 8 APCSTYPLERLREEGFDVTG----YFYNPNIHPYEEYERRLEELKRFAEKLGIP-LIEGD--YDPEEWLRAVKGLEDE-- 78 (176)
T ss_pred ccccHHHHHHHHHCCCCeEE----EEeCCCCCcHHHHHHHHHHHHHHHHHcCCC-EEecC--CCHHHHHHHHhhCccC--
Confidence 58888899999999875333 57778887777665544 5777888885 54544 7778887665533211
Q ss_pred CCccccCCCCCCCCCCCCChhHHHHHHHHHHHH-----HHHHHhChh
Q 011898 424 PSALAMSAPKNISQEDDHNPVRYAIKMFFGSIL-----AFVLFFSPR 465 (475)
Q Consensus 424 ~~~~~~~~~~~~~c~~c~~~~~~~~k~~~~~~~-----~~~~~~~~~ 465 (475)
+...-||..|-.-|=..+..+ +.-+ +-.|+.||.
T Consensus 79 -------pE~g~RC~~Cy~~RL~~tA~~-A~e~gfd~FtTTL~~Sp~ 117 (176)
T PF02677_consen 79 -------PEGGKRCRVCYDLRLEKTAQY-AKELGFDYFTTTLLISPY 117 (176)
T ss_pred -------CccCchhHHHHHHHHHHHHHH-HHHcCCCEEEccccCcCc
Confidence 123458988866654444432 2222 235667774
No 163
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=21.60 E-value=16 Score=36.58 Aligned_cols=56 Identities=23% Similarity=0.441 Sum_probs=28.7
Q ss_pred EEEeccCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCchhhhhccCCChHHHHHH
Q 011898 254 VSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEE 314 (475)
Q Consensus 254 v~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHglP~~~v~~~GDpY~~q~~~ 314 (475)
+....+|..++.+++.++..++++|..| +.|.=++-..|+|..-+ ..|+|..++.+
T Consensus 90 ~~~~~~~P~~~eLv~~Ms~LarEEL~HF---eqVl~im~~RGi~l~~~--~~d~Ya~~L~k 145 (240)
T PF06175_consen 90 LQPKSHYPEKEELVDKMSRLAREELHHF---EQVLEIMKKRGIPLGPD--RKDRYAKGLRK 145 (240)
T ss_dssp ----------HHHHHHHHHHHHHHHHHH---HHHHHHHHHTT-----------SHHHHHHT
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHH---HHHHHHHHHcCCCCCCC--CcCHHHHHHHH
Confidence 4556789999999999999999999877 34444567778887765 46899665544
No 164
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.52 E-value=9.6e+02 Score=25.21 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCc---eEEEcCCCCCCHHHHHHHHHHHHHH
Q 011898 386 EYKELALESGIE---NWGRVPALNCTPSFITDLADAVIEA 422 (475)
Q Consensus 386 E~re~a~e~G~~---~~~rvp~LNdsp~fI~aLadlV~e~ 422 (475)
..++.+.+.|.+ +|..+|=+||+++-++.|++.+...
T Consensus 244 ~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l 283 (345)
T PRK14457 244 DCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGF 283 (345)
T ss_pred HHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcC
Confidence 345555566643 6778888999999999999999763
No 165
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=21.44 E-value=6.4e+02 Score=25.33 Aligned_cols=62 Identities=11% Similarity=0.009 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCceEEEeeeccCCCHHHHHHH---HHHCCCCEEEEEecCCcccccChHHHHHHHHHH
Q 011898 177 QALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQ---IKRDRITRLVVLPLYPQFSISTTGSSIRVLQNI 242 (475)
Q Consensus 177 ~~L~~~L~~~~~~~~V~~amrY~~P~iedal~~---l~~~Gv~rIvvlPLyPqYS~sTtgS~~~~l~~~ 242 (475)
+.++...+.....++|..|- +...++++++. .++.|++-++++| |.|...|-....+.+.+.
T Consensus 58 ~~~~~~~~~~~~~~~viagv--~~~~~~~ai~~a~~a~~~Gad~v~~~~--P~y~~~~~~~i~~~~~~v 122 (288)
T cd00954 58 QIAEIVAEAAKGKVTLIAHV--GSLNLKESQELAKHAEELGYDAISAIT--PFYYKFSFEEIKDYYREI 122 (288)
T ss_pred HHHHHHHHHhCCCCeEEecc--CCCCHHHHHHHHHHHHHcCCCEEEEeC--CCCCCCCHHHHHHHHHHH
Confidence 33333343333356677653 45678888874 4667999998877 445444443344444333
No 166
>PRK01355 azoreductase; Reviewed
Probab=21.38 E-value=4.8e+02 Score=24.65 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=21.3
Q ss_pred CCch---HHHHHHHHHHHHHHHHhcCCCceEEE
Q 011898 165 GSPL---RKITDEQAQALKTALEAKNLPVNVYV 194 (475)
Q Consensus 165 gSPL---~~~T~~qa~~L~~~L~~~~~~~~V~~ 194 (475)
+||- ...|...++...+.+.+.+++..|..
T Consensus 9 gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~ 41 (199)
T PRK01355 9 GSMVAKEKSFSSALTDKFVEEYKKVNPNDEIII 41 (199)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 5774 68888999988888877554444443
No 167
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=21.37 E-value=3.8e+02 Score=27.30 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=39.9
Q ss_pred CHHHHHH---HhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEEE-cCCCCCCHHHHHHHH
Q 011898 349 YTDEVLV---ELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGR-VPALNCTPSFITDLA 416 (475)
Q Consensus 349 ~t~d~L~---~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~r-vp~LNdsp~fI~aLa 416 (475)
+|.++++ ...+.|+..|+++||.|..-.- .+|-.-++++++..+..-+.| .|-.+-+++.+..|+
T Consensus 86 ~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~---~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 86 GTAQAIEYAQAAERAGADGILLLPPYLTEAPQ---EGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCH---HHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 5555554 4556799999999998775433 334444677777666543333 233455677666665
No 168
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=21.20 E-value=3.5e+02 Score=24.24 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=27.2
Q ss_pred HHhcCCCceEEEeeeccCC-----CHHHHHHHHHHCCCCEEEEEecCCc
Q 011898 183 LEAKNLPVNVYVGMRYWYP-----FTEEAVQQIKRDRITRLVVLPLYPQ 226 (475)
Q Consensus 183 L~~~~~~~~V~~amrY~~P-----~iedal~~l~~~Gv~rIvvlPLyPq 226 (475)
+.+.|. ..|.+.+-++-| .+++.++.+.+.|+++|.+.|+.|.
T Consensus 145 ~~~~g~-~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 192 (216)
T smart00729 145 LREAGP-IKVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPR 192 (216)
T ss_pred HHHhCC-cceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeC
Confidence 334442 445555555554 4444555667789999999998885
No 169
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=21.18 E-value=4.8e+02 Score=23.53 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=30.4
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCHH--HHHHHHHH-CCCCEEEEEe
Q 011898 165 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTE--EAVQQIKR-DRITRLVVLP 222 (475)
Q Consensus 165 gSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~ie--dal~~l~~-~Gv~rIvvlP 222 (475)
.+||.....+||+.+.+.|.... +. .-|+.|+.. ++.+.+.+ .|+. +.+.|
T Consensus 21 d~~Lt~~G~~qa~~l~~~l~~~~--~~----~i~sSpl~Ra~qTA~~i~~~~~~~-~~~~~ 74 (177)
T TIGR03162 21 DVPLAEKGAEQAAALREKLADVP--FD----AVYSSPLSRCRELAEILAERRGLP-IIKDP 74 (177)
T ss_pred CCCcChhHHHHHHHHHHHhcCCC--CC----EEEECchHHHHHHHHHHHhhcCCC-ceECC
Confidence 47899999999999999886322 22 234566654 24444443 2433 44444
No 170
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=21.06 E-value=5e+02 Score=21.77 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=11.3
Q ss_pred CCHHHHHHHhhhcCCceEEEEccc
Q 011898 348 PYTDEVLVELGQKGVKSLLAIPVS 371 (475)
Q Consensus 348 P~t~d~L~~L~~~G~k~VvVvPig 371 (475)
+++.+.+.++. -...+|.|+|-|
T Consensus 138 ~~~~~~l~~~g-~~~~ri~vipnG 160 (160)
T PF13579_consen 138 EAMRRYLRRYG-VPPDRIHVIPNG 160 (160)
T ss_dssp HHHHHHHHHH----GGGEEE----
T ss_pred HHHHHHHHHhC-CCCCcEEEeCcC
Confidence 66677777743 234589998864
No 171
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=20.42 E-value=5.9e+02 Score=24.65 Aligned_cols=103 Identities=15% Similarity=0.216 Sum_probs=54.7
Q ss_pred cCCCh--HHHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHhhhcCCceEEEEcccccccc-hhhH
Q 011898 304 AGDPY--RDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEH-IETL 380 (475)
Q Consensus 304 ~GDpY--~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDh-lETL 380 (475)
.|+|- ++-+.+.++.+.+. |+ .++.-| -|-. |...+.++++.. .+. .+.+.+=...|. ...+
T Consensus 78 GGEPll~~~~~~~l~~~~k~~----g~----~i~l~T-NG~~----~~~~~~~~~ll~-~~d-~v~islk~~~~e~~~~~ 142 (246)
T PRK11145 78 GGEAILQAEFVRDWFRACKKE----GI----HTCLDT-NGFV----RRYDPVIDELLD-VTD-LVMLDLKQMNDEIHQNL 142 (246)
T ss_pred CccHhcCHHHHHHHHHHHHHc----CC----CEEEEC-CCCC----CcchHHHHHHHH-hCC-EEEECCCcCChhhcccc
Confidence 48995 33455666666543 65 244444 2422 223355666544 233 344444222221 0000
Q ss_pred ----HHHHHHHHHHHHHcCCc---eEEEcCCCCCCHHHHHHHHHHHHH
Q 011898 381 ----EEIDMEYKELALESGIE---NWGRVPALNCTPSFITDLADAVIE 421 (475)
Q Consensus 381 ----~EIDiE~re~a~e~G~~---~~~rvp~LNdsp~fI~aLadlV~e 421 (475)
.+--++..+.+.+.|++ ++..+|-.||+++=++.|++.+.+
T Consensus 143 ~g~~~~~~l~~i~~l~~~g~~v~i~~~li~g~nd~~~ei~~l~~~l~~ 190 (246)
T PRK11145 143 VGVSNHRTLEFARYLAKRNQKTWIRYVVVPGWTDDDDSAHRLGEFIKD 190 (246)
T ss_pred cCCChHHHHHHHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 01123344555667764 466788899999888889998876
No 172
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=20.36 E-value=3e+02 Score=27.41 Aligned_cols=93 Identities=17% Similarity=0.248 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCeEEEEeCCCCCCCCCCCCHHHHHHH---hhhcCCceEEEEcccccccchhhHHHHHHH
Q 011898 310 DQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVE---LGQKGVKSLLAIPVSFVSEHIETLEEIDME 386 (475)
Q Consensus 310 ~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~Gp~~WL~P~t~d~L~~---L~~~G~k~VvVvPigFvsDhlETL~EIDiE 386 (475)
+|-.+.++.+.+... .+..+..+ +| .++|+++++. ..+.|++.|+++||.|..-.= .++-.-
T Consensus 53 ~Er~~l~~~~~~~~~-----~~~~vi~g--v~-----~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~---~~l~~~ 117 (284)
T cd00950 53 EEHEAVIEAVVEAVN-----GRVPVIAG--TG-----SNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQ---EGLYAH 117 (284)
T ss_pred HHHHHHHHHHHHHhC-----CCCcEEec--cC-----CccHHHHHHHHHHHHHcCCCEEEEcccccCCCCH---HHHHHH
Confidence 444555666666651 12223222 22 3577777664 456799999999998875332 333334
Q ss_pred HHHHHHHcCCceEEE-cCC---CCCCHHHHHHHHH
Q 011898 387 YKELALESGIENWGR-VPA---LNCTPSFITDLAD 417 (475)
Q Consensus 387 ~re~a~e~G~~~~~r-vp~---LNdsp~fI~aLad 417 (475)
++++++..+..-+.| .|. ..-++.+++.|++
T Consensus 118 ~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~ 152 (284)
T cd00950 118 FKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAE 152 (284)
T ss_pred HHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhc
Confidence 678887666543433 332 1235555555543
No 173
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=20.33 E-value=9.4e+02 Score=24.65 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=16.8
Q ss_pred cchhhHHHHHHHHHHHHHHcC
Q 011898 375 EHIETLEEIDMEYKELALESG 395 (475)
Q Consensus 375 DhlETL~EIDiE~re~a~e~G 395 (475)
.-.|..|++....++.+++.|
T Consensus 160 ~~~~~~~~lG~ai~~al~~~~ 180 (294)
T cd07372 160 EGLGEMDVLGKATREAIRKTG 180 (294)
T ss_pred CCHHHHHHHHHHHHHHHHhcC
Confidence 347888889998988777777
No 174
>PLN02727 NAD kinase
Probab=20.23 E-value=6e+02 Score=30.69 Aligned_cols=113 Identities=14% Similarity=0.186 Sum_probs=70.9
Q ss_pred CeEEEEeCCCCC---CC------CCCCCH-HHHHHHhhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHHcCCceEE
Q 011898 331 DHTLAYQSRVGP---VK------WLKPYT-DEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWG 400 (475)
Q Consensus 331 ~~~lafQSr~Gp---~~------WL~P~t-~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIDiE~re~a~e~G~~~~~ 400 (475)
.|..+|-|.++- .. |-.+.. .+-++.|+++|+|.||-.-+----| ..+ .-+.++.|+++|+ +|+
T Consensus 241 n~~~v~~~~~~~~~~~~~~~~~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~---q~~--~~ee~eAae~~GL-~yV 314 (986)
T PLN02727 241 NWNPVYLSTSKEDIDSKESEAAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKD---NFY--QAAVDDAISSGKI-EVV 314 (986)
T ss_pred ccceeeecccccccccccceeeEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCC---Cch--hHHHHHHHHHcCC-eEE
Confidence 377788776631 11 766654 5568999999999999775422211 112 1234667778888 588
Q ss_pred EcCCCC-C--CHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCChhHHHHHHHHHHH
Q 011898 401 RVPALN-C--TPSFITDLADAVIEALPSALAMSAPKNISQEDDHNPVRYAIKMFFGSI 455 (475)
Q Consensus 401 rvp~LN-d--sp~fI~aLadlV~e~l~~~~~~~~~~~~~c~~c~~~~~~~~k~~~~~~ 455 (475)
.+|.-. . +++-++.+++++.+.+.. ...+-|..=..+....+..|..-+
T Consensus 315 hIPVs~~~apt~EqVe~fa~~l~~slpk------PVLvHCKSGarRAGamvA~yl~~~ 366 (986)
T PLN02727 315 KIPVEVRTAPSAEQVEKFASLVSDSSKK------PIYLHSKEGVWRTSAMVSRWKQYM 366 (986)
T ss_pred EeecCCCCCCCHHHHHHHHHHHHhhcCC------CEEEECCCCCchHHHHHHHHHHHH
Confidence 888522 2 668999999999664443 244556555555666666665543
Done!