Query 011900
Match_columns 475
No_of_seqs 134 out of 1096
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:27:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00219 Sec61 alpha subunit; 100.0 2E-106 4E-111 855.1 45.2 466 3-468 3-469 (474)
2 PRK08568 preprotein translocas 100.0 1.1E-99 2E-104 802.4 43.2 448 5-470 1-452 (462)
3 KOG1373 Transport protein Sec6 100.0 3.6E-99 8E-104 748.3 42.5 474 2-475 1-474 (476)
4 COG0201 SecY Preprotein transl 100.0 9.1E-93 2E-97 737.5 33.6 401 13-470 1-426 (436)
5 PRK09204 secY preprotein trans 100.0 1.7E-86 3.6E-91 696.7 34.3 381 23-468 7-419 (426)
6 TIGR00967 3a0501s007 preprotei 100.0 2.3E-86 5.1E-91 693.4 33.1 384 31-470 1-409 (410)
7 PRK12907 secY preprotein trans 100.0 1.4E-85 3E-90 688.5 36.1 379 25-466 9-421 (434)
8 CHL00161 secY preprotein trans 100.0 6.2E-84 1.3E-88 676.1 35.7 380 24-468 4-409 (417)
9 PRK12417 secY preprotein trans 100.0 1.1E-81 2.3E-86 655.0 36.7 370 24-466 6-393 (404)
10 TIGR02920 acc_sec_Y2 accessory 100.0 1.3E-77 2.7E-82 624.2 37.5 366 29-466 1-386 (395)
11 PF00344 SecY: SecY translocas 100.0 1.4E-71 3E-76 571.7 32.5 327 77-460 1-346 (346)
12 PF10559 Plug_translocon: Plug 97.4 6.9E-05 1.5E-09 51.7 1.7 35 42-76 1-35 (35)
13 PF04923 Ninjurin: Ninjurin ; 57.0 16 0.00035 31.4 4.1 45 84-128 45-92 (104)
14 PF12263 DUF3611: Protein of u 56.0 53 0.0012 31.2 7.7 49 359-418 58-108 (183)
15 PF06898 YqfD: Putative stage 50.3 11 0.00025 39.7 2.5 64 359-425 91-163 (385)
16 TIGR02876 spore_yqfD sporulati 47.0 17 0.00036 38.5 3.1 63 359-425 88-159 (382)
17 PF07330 DUF1467: Protein of u 45.0 33 0.00072 28.5 3.9 38 398-435 32-70 (85)
18 PF05697 Trigger_N: Bacterial 41.4 27 0.00058 31.3 3.2 30 398-428 37-67 (145)
19 PRK15374 pathogenicity island 39.8 1.2E+02 0.0026 33.5 8.1 52 411-465 307-359 (593)
20 PF00344 SecY: SecY translocas 28.0 51 0.0011 34.2 3.0 62 357-423 237-299 (346)
21 TIGR01647 ATPase-IIIA_H plasma 26.8 2.2E+02 0.0048 32.8 8.2 79 385-467 1-82 (755)
22 TIGR01523 ATPase-IID_K-Na pota 25.7 1.6E+02 0.0035 35.5 7.0 82 384-469 25-110 (1053)
23 PRK01490 tig trigger factor; P 23.3 66 0.0014 34.3 2.9 23 398-420 37-60 (435)
24 TIGR00115 tig trigger factor. 22.1 68 0.0015 33.9 2.7 35 386-420 7-48 (408)
25 smart00831 Cation_ATPase_N Cat 21.8 3.5E+02 0.0075 20.2 6.2 35 385-419 10-46 (64)
26 TIGR01524 ATPase-IIIB_Mg magne 20.9 2.7E+02 0.0059 32.7 7.5 81 382-466 30-114 (867)
27 PF00690 Cation_ATPase_N: Cati 20.3 1.8E+02 0.0038 22.4 4.1 39 382-420 17-57 (69)
28 PF10905 DUF2695: Protein of u 20.1 1.4E+02 0.0031 22.6 3.3 24 378-401 22-45 (53)
29 PRK00733 hppA membrane-bound p 20.0 6.3E+02 0.014 28.9 9.7 79 360-442 488-570 (666)
No 1
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=100.00 E-value=1.8e-106 Score=855.11 Aligned_cols=466 Identities=73% Similarity=1.229 Sum_probs=425.6
Q ss_pred CcCchHHhhhhhcccCccccccccccchHHHHHHHHHHHHHHHHcccccCCCcccCcCCChhhHHHHHHhhccccccccc
Q 011900 3 GGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELG 82 (475)
Q Consensus 3 ~~~~~~~~~~~~~~~lp~v~~p~~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~~~~~~~~~~~~a~~~~slfsLG 82 (475)
-||+|+|.+||+++++|||++|+++.++|+|++||++++++||+|++||+||+|.+...|++.+++++++.+|+|+|+||
T Consensus 3 ~~~~~~~~~~~~~~~lP~v~~p~~~~~lr~Kil~T~~~l~iy~lg~~IPlpGi~~~~~~~~~~~~~~ifag~~~slf~LG 82 (474)
T PTZ00219 3 KMTRFLNLLRPAMAILPEVAEPDRKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSSSDPFYWMRVILASNRGTLMELG 82 (474)
T ss_pred CcchHHHHHHHHHHhCCCccCCccCccHHHHHHHHHHHHHHHHHhccCcCCCcChhhccchHHHHHHHHhcCcchHHHhc
Confidence 46999999999999999999999999999999999999999999999999999998778999999999999999999999
Q ss_pred chhHHhHHHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHH
Q 011900 83 ITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAG 162 (475)
Q Consensus 83 I~PyItAsIi~QLl~~~kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~~~~~~~~~~~~~~vl~L~aGs 162 (475)
|+|||||||+|||+++.|+.+.|++.++||||+|++||++|+++|++||++++..+.++...+.++...+.+++||++|+
T Consensus 83 I~PyItAsII~QLL~~~~l~~~~~~~~~~r~k~~~~tr~lti~la~iqa~~~~~~~~~g~~~~~~~~~~~~iilqL~~g~ 162 (474)
T PTZ00219 83 ISPIVTSSMVMQLLAGSKIIDVDQNNKEDRALFEGAQKLLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFAG 162 (474)
T ss_pred cHHHHHHHHHHHHHhhCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccHHHHHHHHHHHHHHH
Confidence 99999999999999988999999999999999999999999999999999998643334323334446788899999999
Q ss_pred HHHHHHhhhhhccccccchhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHHhhcCC
Q 011900 163 IIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNL 242 (475)
Q Consensus 163 ~~~~wL~e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 242 (475)
++++||||++|||||+|||+||+|++||+++++|+.|+|.+.....+.+++|+++++++.+.+++++..++.++++|.++
T Consensus 163 ~~v~wL~E~Itkg~GIGnGiSL~I~agI~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~r~~l 242 (474)
T PTZ00219 163 IVVILLDELLQKGYGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRPHL 242 (474)
T ss_pred HHHHHHHHHHhcCcccccchHHHHHHHHHHHhHHHhcccccccccccccchhhHHHHHHHHhhcccccchhhhhhhhccc
Confidence 99999999999999999999999999999999999999987765555578898888877555677888999999999998
Q ss_pred ccHHHHHHHHHHHHHhhheeccEEEEeeeeccCCCCCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhhcCCcchhh
Q 011900 243 PNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVN 322 (475)
Q Consensus 243 ~~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~ 322 (475)
|+++.++++++++.+++|+|++|||||++|+|++++++++|+|+||+|+||+|||+|++++|+++++++++.++++..++
T Consensus 243 ~~~~~~~~~~~i~~~vv~~~~~~~~IPi~~~~~~g~~~~~PiKln~agvmPiIfassll~~p~~i~~~l~~~~~~~~~~~ 322 (474)
T PTZ00219 243 PNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPIILQTALVSNLYFFSQILYRRFKNNFLIN 322 (474)
T ss_pred ccHHHHHHHHHHHHhheeeeeeEEEEeeecccccCcCcccceeecccccHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 99888889999999999999999999999999999999999999999999999999999999999999876555555455
Q ss_pred ccccccccccCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHcCCcc
Q 011900 323 LLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVM 402 (475)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk~g~~I 402 (475)
++++|.+.+++|...|++|+++|++||+++.+.+.+|.|.++|++++++||++|+++|++++|+||||+||||||+|++|
T Consensus 323 ~l~~~~~~~~~~~~~~v~gl~~~l~~p~~~~~~~~~p~~~iiy~ilii~fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~I 402 (474)
T PTZ00219 323 LLGQWQEVEYSGQSVPVGGLAYYLSPPNSFSDIINDPIHTILYIVFVLFSCALFSKTWIEVSGSSAKDVAKQLKDQGMGM 402 (474)
T ss_pred cccceeccccccccccchhHHhhcCCCcchhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCc
Confidence 66666531112445799999999999999988889999999999999999999999999999999999999999999999
Q ss_pred ccccCc-hhHHHHHhhchhhhhHHHHHHHHHHHhHHHHhcccccchhHHHHHHHHHHHHHHHHHhhh
Q 011900 403 PGHRDS-NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERAS 468 (475)
Q Consensus 403 pGiRpg-~T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~g~GTslLI~Vgv~~~~ye~~~~e~~~ 468 (475)
||+||| +|+|||+|+++|+|++||++++++|++|++++..+||||+||+|||++++||++.||+.+
T Consensus 403 pG~RpGk~t~~yL~k~i~r~t~~Ga~~l~~ia~lp~~~~~~~gGTslLI~VgV~~~~~e~~~~e~~~ 469 (474)
T PTZ00219 403 VGYRDSSSMVRVLNRYIPTAASFGGMCIGALTILADFLGAIGSGTGILLAVTIIYQYYETFAKEKEQ 469 (474)
T ss_pred cCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHhh
Confidence 999999 999999999999999999999999999999988889999999999999999999999877
No 2
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=1.1e-99 Score=802.37 Aligned_cols=448 Identities=39% Similarity=0.725 Sum_probs=394.9
Q ss_pred CchHHhhhhhcccCccccccccccchHHHHHHHHHHHHHHHHcccccCCCcccCcCCChhhHHHHHHhhcccccccccch
Q 011900 5 FRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGIT 84 (475)
Q Consensus 5 ~~~~~~~~~~~~~lp~v~~p~~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~~~~~~~~~~~~a~~~~slfsLGI~ 84 (475)
|.++|.+||+.+++|||++|++++++|+|++||++++++||+|++||+||+|.++ .|++..++.+++.+++|+|+|||+
T Consensus 1 ~~~~~~~~~~~~~~P~v~~p~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~-~~~l~~l~~~~gg~~~slf~LGI~ 79 (462)
T PRK08568 1 MGFLDKLEPILERLPAVKRPKGHVPFKEKLKWTAIVLILYFILTNIPLYGISQSS-QDLFELLRIIFAGSFGTLLQLGIG 79 (462)
T ss_pred CCHHHHHHHHHHhCCCccCCCcCccHHHHHHHHHHHHHHHHHHccCcCCCcCccc-ccHHHHHHHHhCCcccchHHhCcH
Confidence 5689999999999999999999999999999999999999999999999999876 565555555667889999999999
Q ss_pred hHHhHHHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--ccchhHHHHHHHHHHHHH
Q 011900 85 PIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVS--QLGAGNAILIILQLCFAG 162 (475)
Q Consensus 85 PyItAsIi~QLl~~~kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~~~~--~~~~~~~~~~vl~L~aGs 162 (475)
|||||||+|||++..++.++|+++|+||||+|++||++|+++|++||.+++.++.+.... ..++.+.+.+++||++|+
T Consensus 80 PyItAsII~QLL~~~~l~~l~~~~~~gr~k~~~~tr~lti~~a~iqs~~~~~~~~~~~~~~~~~~~~~~~~i~l~L~~Gt 159 (462)
T PRK08568 80 PIVTAGIILQLLVGSKLINLDLSDPEDRALFQGLQKLLAIVMIALEAAPFVLAGAFGPATGLASTPLLALLIFLQLFLGG 159 (462)
T ss_pred HHHHHHHHHHHHhhCchheeccCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHHHHHHH
Confidence 999999999999877888888888999999999999999999999999998753322211 124556788999999999
Q ss_pred HHHHHHhhhhhccccccchhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHHhhcCC
Q 011900 163 IIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNL 242 (475)
Q Consensus 163 ~~~~wL~e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 242 (475)
++++||||+||| ||+|||+|++|++||+++++|+++++.+ ..+.|..|.++++.+...+++.+...+ +|+++
T Consensus 160 ~i~~wL~E~Itk-~GiGnGiSliI~~gI~~~i~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~----~r~~l 231 (462)
T PRK08568 160 ILIILLDELVSK-WGIGSGISLFILAGVSQTIFVGLFNWLT---GGQGLPVGFIPALFSAITSGNLTLALL----LTTRG 231 (462)
T ss_pred HHHHHHHHHHHh-cCcCcchHHHHHHHHHHHHHHHHhhhhc---ccCccccchHHHHHHHHhcCccchhhh----hcccc
Confidence 999999999999 9999999999999999999999998644 334578898888766444443333333 77788
Q ss_pred ccHHHHHHHHHHHHHhhheeccEEEEeeeeccCCCCCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhhcCCcchhh
Q 011900 243 PNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVN 322 (475)
Q Consensus 243 ~~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~ 322 (475)
|++..++++++++++++|+|++|||||++|+|.+++++|+|+|+||+|+||+|||||++++|+++++++.+. . .+
T Consensus 232 ~~l~~~~~~~~i~~~~v~~q~~~~~IPI~~~k~~g~~s~iPiKln~aGvmPiIFassll~~p~~i~~~l~~~----~-~~ 306 (462)
T PRK08568 232 LLLLGLITTIVIFLIVVYLESMRVEIPLSHGRVRGARGRYPLKFIYVSVLPVILVRALQANIQLFGQLLQRL----G-IP 306 (462)
T ss_pred cHHHHHHHHHHHHHHheeEEeeEEEEEEEeccccCCCceeeEEecccCcHHHHHHHHHHHHHHHHHHHHhhc----C-ch
Confidence 999999999999999999999999999999998889999999999999999999999999999999987432 1 24
Q ss_pred ccccccccccCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHcCCcc
Q 011900 323 LLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVM 402 (475)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk~g~~I 402 (475)
++++|.+. + ..|++++++|++||+++.+++.+|.+.++|.++.+++|++|||+|++++|+||||+||||||||++|
T Consensus 307 ~~~~~~~~---~-~~~~~~l~~~~~~p~~~~~~~~~p~~~vvY~~~~~~l~i~Fs~fy~~i~g~~p~diAe~Lkk~g~~I 382 (462)
T PRK08568 307 ILGTYDSS---G-ASPISGLAYYLSPPHSPYDWIQDPLRAIIYALFMIVLSILFAIFWVETTGLDPKTQARQLQNSGMQI 382 (462)
T ss_pred hhhhcccc---c-ccchhHHHHHhCCCcchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence 56666432 1 2367889999999999888889999999999999999999999999999999999999999999999
Q ss_pred ccccCc-h-hHHHHHhhchhhhhHHHHHHHHHHHhHHHHhcccccchhHHHHHHHHHHHHHHHHHhhhcc
Q 011900 403 PGHRDS-N-LQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 470 (475)
Q Consensus 403 pGiRpg-~-T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~g~GTslLI~Vgv~~~~ye~~~~e~~~~~ 470 (475)
||+||| + |+|||+|+++|+|++||++++++|++|++++..|+|||+||+||++++++||+++|..+|.
T Consensus 383 pGiRpG~~~t~~yL~~~i~r~t~~Ga~~l~~ia~lp~~~~~~g~gtslLI~Vgv~~~~~~qi~~~~~~~~ 452 (462)
T PRK08568 383 PGFRRNPKVIEKVLERYIPPVTVIGGAIVGLLAVLADLLGALGGGTGLLLTVSIVYQLYEEIAREQLMEM 452 (462)
T ss_pred cCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999 6 9999999999999999999999999999999889999999999999999999999987653
No 3
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-99 Score=748.29 Aligned_cols=474 Identities=76% Similarity=1.234 Sum_probs=464.2
Q ss_pred CCcCchHHhhhhhcccCccccccccccchHHHHHHHHHHHHHHHHcccccCCCcccCcCCChhhHHHHHHhhcccccccc
Q 011900 2 GGGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMEL 81 (475)
Q Consensus 2 ~~~~~~~~~~~~~~~~lp~v~~p~~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~~~~~~~~~~~~a~~~~slfsL 81 (475)
|+|+|++|.+||+.+.+|||+.|+||.++|+|++||...+++|.+.+|||++|+.+++.+||++|+|.+++++|+|+|+|
T Consensus 1 m~g~R~l~~vkPf~~~lPEv~~Perk~pf~eK~~wt~i~~~iflv~~QiPLyGi~ssdt~DP~yw~RvilasnrgTLMel 80 (476)
T KOG1373|consen 1 MSGFRFLDLVKPFLSFLPEVEAPERKLPFREKLLWTAISLLIFLVCSQIPLYGIMSSDTADPFYWMRVILASNRGTLMEL 80 (476)
T ss_pred CCCcchhhhhhhhhccCccccCchhcCcHHHHHHHHHHHHHHHHHHhhccccccccCCCCCcHHHHHHHHhcCCcchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHhHHHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHH
Q 011900 82 GITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFA 161 (475)
Q Consensus 82 GI~PyItAsIi~QLl~~~kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~~~~~~~~~~~~~~vl~L~aG 161 (475)
|+.|++|++.+||+|+++|+++.+.+.++||..+|..||++++++++.|+..++++|+|+.+++.|...++++++||+..
T Consensus 81 GisPivtSglimQlLag~kiIeV~~~~~~DR~Lfn~aQKl~~iii~vgqa~~yV~tG~yG~p~dLg~~~clLii~QL~~A 160 (476)
T KOG1373|consen 81 GISPIVTSGLIMQLLAGSKIIEVNFNIKEDRELFNGAQKLFAIIITVGQAVVYVMTGMYGSPSDLGVGICLLIILQLFFA 160 (476)
T ss_pred ccchhhHHHHHHHHHccCcEEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhcchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988889988999999999999
Q ss_pred HHHHHHHhhhhhccccccchhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHHhhcC
Q 011900 162 GIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQN 241 (475)
Q Consensus 162 s~~~~wL~e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~ 241 (475)
+.+++.|||+++||||+|||+||+|.+|||++++|+.|+|.+++++++.|.+|++++++|.+++++||..|++++|+|++
T Consensus 161 giiv~lLdEllqKGyGlgSGislfiatnice~ivwkaFsptti~tGrg~efeGAvIalfhll~tr~~k~~al~eAF~Rqn 240 (476)
T KOG1373|consen 161 GIIVILLDELLQKGYGLGSGISLFIATNICESIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRKDKVRALREAFYRQN 240 (476)
T ss_pred hHHHHHHHHHHHhccCcCcchhhhhHHHHHHHHHHHhcCceEEecCCCceechHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHhhheeccEEEEeeeeccCCCCCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhhcCCcchh
Q 011900 242 LPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFV 321 (475)
Q Consensus 242 ~~~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~ 321 (475)
+||+..++++++++.+++|+|..|+++|++++|.||+.+.+|||+.|++.||+|+.|++.++...+.|+++.+++.|.++
T Consensus 241 LPNl~nl~at~lif~iViYlQgfRVeLPirS~r~RG~~~~yPIKL~YTsn~pIilqsalvsni~~isqll~~k~~~n~~v 320 (476)
T KOG1373|consen 241 LPNLTNLLATVLIFLIVIYLQGFRVELPIRSTRARGQYGSYPIKLFYTSNMPIILQSALVSNIFVISQLLYKKFPGNFLV 320 (476)
T ss_pred ccHHHHHHHHHHHHHHHhhccceEEEeeecchhhcccCCccceEeeecCCcHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccccCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHcCCc
Q 011900 322 NLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMV 401 (475)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk~g~~ 401 (475)
+++|.|.+.+++++..|++|+.||++||.++.+.+.||+|.++|.+++..-|.+||..|.+++|.+|||+|||||+|++.
T Consensus 321 ~llG~w~~~~~~~~~~p~~glsyy~~pp~s~~~~~~dPi~~i~Yi~fml~sca~FsktWievSgsSarDvAkqlKeQ~mv 400 (476)
T KOG1373|consen 321 RLLGVWEDSEGGGRSMPVSGLSYYITPPESFGEALQDPIHFLVYIVFMLGSCALFSKTWIEVSGSSARDVAKQLKEQQMV 400 (476)
T ss_pred EEEeeeecCCCCcccccccceeEecCChHHHHHHhhCcchhHHHHHHHHHHHHHHHhHHHHHcCCCHHHHHHHHHhccce
Confidence 99999987766678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCchhHHHHHhhchhhhhHHHHHHHHHHHhHHHHhcccccchhHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 011900 402 MPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 475 (475)
Q Consensus 402 IpGiRpg~T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~g~GTslLI~Vgv~~~~ye~~~~e~~~~~~~~~~ 475 (475)
++|+|.+++.|+|+|++|.++++||.+++.++++.+++|.+|+||+++++|++++++||.+.||+..++|+.++
T Consensus 401 m~G~RE~n~~~eLnr~IPtAA~~Gg~~igaltV~~d~lgaiGsgtgIllavt~iyqy~E~~~kE~~~~~g~~~~ 474 (476)
T KOG1373|consen 401 MRGHRETNMAKELNRYIPTAAAFGGLCIGALTVLADLLGAIGSGTGILLAVTIIYQYFEIFAKEQAQEGGFSAL 474 (476)
T ss_pred ecCcchhhHHHHHHhhccHHHHhhhhHHHHHHHHHHHhhcccCCceEEeehHHHHHHHHHHHHHHhhcCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998874
No 4
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=100.00 E-value=9.1e-93 Score=737.51 Aligned_cols=401 Identities=29% Similarity=0.482 Sum_probs=334.4
Q ss_pred hhcccCccccccc-cccchHHHHHHHHHHHHHHHHcccccCCCcccCcCCChhhH-----HHHHH---hhcccccccccc
Q 011900 13 PFLPFLPEVQSAD-RKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYW-----MRVIL---ASNRGTVMELGI 83 (475)
Q Consensus 13 ~~~~~lp~v~~p~-~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~~~~~~~-----~~~~~---a~~~~slfsLGI 83 (475)
|..+.+|++.+|+ +.+++|||++||++++++||+|++||+||+|.++..+.+.+ +.|++ |++|+|+|+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~~~~~~~~n~~~GGal~~~SIfaLGI 80 (436)
T COG0201 1 PLLPLLPEVLSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGALSRGSIFALGI 80 (436)
T ss_pred CcchhhHHHhcchhccHHHHHHHHHHHHHHHHHHHhCcCcCCCCCHHHHHHHHHHhhhhHHHHHhcccccccchHHHHcc
Confidence 3567899999998 67899999999999999999999999999999877654333 44666 469999999999
Q ss_pred hhHHhHHHHHHHHh-cC-cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccc---ccchhHHHHHHHH
Q 011900 84 TPIVTSGLVMQLLA-GS-KIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYG-SVS---QLGAGNAILIILQ 157 (475)
Q Consensus 84 ~PyItAsIi~QLl~-~~-kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~-~~~---~~~~~~~~~~vl~ 157 (475)
+||||||||||||+ .. +++++||++|+||||+|++|||+|+++|++||.+++..+.+. ... +.+..++++++++
T Consensus 81 ~PyITASII~QLL~~~~p~l~~l~k~~e~gR~k~~~~tRyltlvla~iQa~~~~~~~~~~~~~~~~~~~~~~~~~l~il~ 160 (436)
T COG0201 81 MPYITASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQ 160 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHH
Confidence 99999999999994 33 567799999999999999999999999999999999853321 111 2235788999999
Q ss_pred HHHHHHHHHHHhhhhhccccccchhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHH
Q 011900 158 LCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAF 237 (475)
Q Consensus 158 L~aGs~~~~wL~e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~ 237 (475)
|++|||++|||||+||| ||+|||+||+|++||++++++.++++..... .+.. ..+.
T Consensus 161 L~~Gt~~lmwLgE~Itk-~GIGnGiSLiIfagI~~~lp~~~~~~~~~~~------~~~~--~~~~--------------- 216 (436)
T COG0201 161 LTAGTMFLMWLGEQITK-RGIGNGISLIIFAGIVASLPSAIFGIIGALP------TGAL--FLSI--------------- 216 (436)
T ss_pred HHHHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHhHHHHHHHHHHHh------cchh--HHHH---------------
Confidence 99999999999999999 9999999999999999999988887421100 0100 0000
Q ss_pred hhcCCccHHHHHHHHHHHHHhhheeccEEEEeeeecc---CCCCCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhh
Q 011900 238 YRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKN---ARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRK 314 (475)
Q Consensus 238 ~~~~~~~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~---~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~ 314 (475)
+.+++.++.++++++++||+|++|||||+||+| .+|+++|+|+|+|||||||+|||||++++|.++++++...
T Consensus 217 ----l~~l~~~~~~l~ii~~vvyve~~~r~IPI~y~~~~~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~~~ 292 (436)
T COG0201 217 ----LFLLLLVLLTLAIIFLVVYVEQARRRIPIQYAKRQSYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNG 292 (436)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhheEEEeehhhhhhhhcCCcCceeeeEeeccCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 012567778888899999999999999999999 7899999999999999999999999999999999987521
Q ss_pred cCCcchhhccccccccccCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHH
Q 011900 315 YSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQ 394 (475)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~ 394 (475)
.. ...+ .|. ..+..+++| .+|+|+.+|.+++++|| |||++++ .||||+|||
T Consensus 293 --~~--~~~~-~~~-----------~~i~~~l~~--------~~~~y~~~y~~lii~Fs----~Fy~~i~-~np~~~A~~ 343 (436)
T COG0201 293 --GL--AYYL-SPL-----------TSISDALSP--------GSPVYIALYVVLIIFFS----YFYTEIQ-FNPEEIAEN 343 (436)
T ss_pred --Cc--cccc-cch-----------hhHHHhccC--------CcHHHHHHHHHHHHHHH----HHHHHHh-cCHHHHHHH
Confidence 00 0000 011 112233433 57888888888887775 8999999 889999999
Q ss_pred HHHcCCccccccCc-hhHHHHHhhchhhhhHHHHHHHHHHHhHHHHhccc------ccchhHHHHHHHHHHHHHHHHHhh
Q 011900 395 LKEQQMVMPGHRDS-NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIG------SGTGILLAVTIIYQYFETFEKERA 467 (475)
Q Consensus 395 Lkk~g~~IpGiRpg-~T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~g------~GTslLI~Vgv~~~~ye~~~~e~~ 467 (475)
|||+|.+|||+||| +|+|||+|+++|+|++||+|++++|++|++++..+ ||||+||+|++++++|||+++|..
T Consensus 344 lkksG~~IPGiRpg~~te~yL~rvi~rlt~~Ga~~l~~iailp~l~~~~~~~~~~~gGTslLI~V~V~l~~~~qi~~~l~ 423 (436)
T COG0201 344 LKKSGGFIPGIRPGKDTEKYLNRVIPRLTFIGALFLGLIAILPELLGTAGGVPFYFGGTSLLIVVGVALDTYEQIEAELL 423 (436)
T ss_pred HHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCeeeeeehHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999999999877 999999999999999999999987
Q ss_pred hcc
Q 011900 468 SEL 470 (475)
Q Consensus 468 ~~~ 470 (475)
+|+
T Consensus 424 ~~~ 426 (436)
T COG0201 424 MEK 426 (436)
T ss_pred Hhh
Confidence 664
No 5
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=1.7e-86 Score=696.74 Aligned_cols=381 Identities=21% Similarity=0.356 Sum_probs=320.3
Q ss_pred ccccccchHHHHHHHHHHHHHHHHcccccCCCcccCcCC-------ChhhHHHHHH---hhcccccccccchhHHhHHHH
Q 011900 23 SADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGA-------DPFYWMRVIL---ASNRGTVMELGITPIVTSGLV 92 (475)
Q Consensus 23 ~p~~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~~-------~~~~~~~~~~---a~~~~slfsLGI~PyItAsIi 92 (475)
..++++|+|+|++||++++++||+|++||+||+|.++.. ++++++++++ |++|+|+|+|||+|||||||+
T Consensus 7 ~~~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~~~~~~~~~~~~~~~~Gga~~~~slf~LGI~PyItAsIi 86 (426)
T PRK09204 7 NAFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAALAQLFDQQSGGILGLFNLFSGGALSRFSIFALGIMPYITASII 86 (426)
T ss_pred hHhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHhhccccHHHHHHHHcccchhcccHHHhCcHHHHHHHHH
Confidence 345689999999999999999999999999999987642 2688889988 689999999999999999999
Q ss_pred HHHHhcC--cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccc---cc-cccchhHHHHHHHHHHHHHHH
Q 011900 93 MQLLAGS--KIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMS--GMYG---SV-SQLGAGNAILIILQLCFAGII 164 (475)
Q Consensus 93 ~QLl~~~--kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~--g~~~---~~-~~~~~~~~~~~vl~L~aGs~~ 164 (475)
|||++.. +++++|||+|+||||+|++||++|+++|++||+++++. +.++ .. .+.+....+.++++|++|+++
T Consensus 87 ~QLL~~~ip~l~~l~kege~gr~k~~~~tr~ltl~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~L~~Gs~i 166 (426)
T PRK09204 87 MQLLTVVIPKLEELKKEGEAGRRKINQYTRYLTVVLAFVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAGTMF 166 (426)
T ss_pred HHHHHHHhhhHHHHhhccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCccHHHHHHHHHHHHHHHHH
Confidence 9999976 89999999999999999999999999999999998853 1111 11 112345678899999999999
Q ss_pred HHHHhhhhhccccccchhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHHhhcCCcc
Q 011900 165 VICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPN 244 (475)
Q Consensus 165 ~~wL~e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 244 (475)
++||||+||| ||+|||+|++|++||+++++|++.+..+.... + . .+. . ..
T Consensus 167 ~~wL~e~It~-~GiGnGiSliI~~gI~~~ip~~~~~~~~~~~~-~-~-~~~----~----------------------~~ 216 (426)
T PRK09204 167 LMWLGEQITE-RGIGNGISLIIFAGIVAGLPSAIGQTFELART-G-S-LSI----L----------------------VF 216 (426)
T ss_pred HHHHHHHHhc-cCcccchHHHHHHHHHHHHHHHHHHHHHHhcc-C-c-chH----H----------------------HH
Confidence 9999999999 99999999999999999998776543211000 0 0 000 0 01
Q ss_pred HHHHHHHHHHHHHhhheeccEEEEeeeeccC-------CCCCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhhcCC
Q 011900 245 ITNLLATVLVFLIVVYFQGFKVVLPVRSKNA-------RGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSG 317 (475)
Q Consensus 245 l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~-------~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~ 317 (475)
++.+++++++++++||+|++|||||+||+|+ +++++|+|+|+||+|+||+|||+|++++|++++++. ++
T Consensus 217 ~~~~~~~~~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~----~~ 292 (426)
T PRK09204 217 LLLIVLFLAVIAFVVFVEQAQRRIPVQYAKRQVGRKMYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQFF----GS 292 (426)
T ss_pred HHHHHHHHHHHHHHheeeeeEEEEEEEehhhhccccccCCCCeeeeeeecccCchHHHHHHHHHHHHHHHHHhc----Cc
Confidence 3445667788889999999999999999874 457899999999999999999999999999998871 22
Q ss_pred cchhhccccccccccCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHH
Q 011900 318 NFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKE 397 (475)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk 397 (475)
+. |.+ .+.++++| .+|.|.++|.+++++|| |+|++++ +||||+||||||
T Consensus 293 ~~-------~~~-----------~~~~~~~~--------~~~~~~~~y~~lii~Fs----~fy~~i~-~~p~~iAe~l~k 341 (426)
T PRK09204 293 GS-------WLQ-----------WIANYLSP--------GSPLYILLYALLIIFFT----FFYTAIQ-FNPEEIAENLKK 341 (426)
T ss_pred hH-------HHH-----------HHHHHhCC--------CChHHHHHHHHHHHHHH----HHHHHHh-cCHHHHHHHHHH
Confidence 21 211 13456765 57889999999888865 8899999 999999999999
Q ss_pred cCCccccccCc-hhHHHHHhhchhhhhHHHHHHHHHHHhHHHHhccc------ccchhHHHHHHHHHHHHHHHHHhhh
Q 011900 398 QQMVMPGHRDS-NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIG------SGTGILLAVTIIYQYFETFEKERAS 468 (475)
Q Consensus 398 ~g~~IpGiRpg-~T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~g------~GTslLI~Vgv~~~~ye~~~~e~~~ 468 (475)
+|++|||+||| +|+|||+|+++|+|++||++++++|++|++++..+ +|||+||+||++++++||++....+
T Consensus 342 ~g~~IpGiRpG~~T~~yL~~~i~r~t~~Ga~~l~~ia~~p~~~~~~~~~~~~~ggTslLI~Vgv~l~~~~qi~~~~~~ 419 (426)
T PRK09204 342 SGGFIPGIRPGEQTAEYLDKVLTRLTLVGAIYLAFIALLPEILQNALGVPFYFGGTSLLIVVGVALDTMKQIESQLMS 419 (426)
T ss_pred CCCcccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999998765 8999999999999999999876543
No 6
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=100.00 E-value=2.3e-86 Score=693.45 Aligned_cols=384 Identities=33% Similarity=0.574 Sum_probs=315.2
Q ss_pred HHHHHHHHHHHHHHHHcccccCCCcccCcCCCh-----hhHHHHHH---hhcccccccccchhHHhHHHHHHHHhc--Cc
Q 011900 31 REKVIYTVISLFIFLVCSQLPLYGIHSTTGADP-----FYWMRVIL---ASNRGTVMELGITPIVTSGLVMQLLAG--SK 100 (475)
Q Consensus 31 ~~ril~T~~il~iy~lgs~IPlpGi~~~~~~~~-----~~~~~~~~---a~~~~slfsLGI~PyItAsIi~QLl~~--~k 100 (475)
|+|++||++++++||+|++||+||+|.++..|. +.++.+++ |++|+|+|+|||+|||||||+|||++. .+
T Consensus 1 ~~ki~~Tl~~l~iyrlg~~IPlpGi~~~~~~~~~~~~~~~~~~~~~sgga~~~~slf~LGI~PyItAsIi~QLL~~~~~~ 80 (410)
T TIGR00967 1 REKLLFTLGLLVLFRIGTFIPVPGIDASAFQQDIQQNGIFNLLNLFSGGALNQGSIFALGISPYITASIIIQLLTGDVPP 80 (410)
T ss_pred CchHHHHHHHHHHHHHHccCCCCCCCHHHHhhhhccccHHHHHHHHhccccccccHHHHccHHHHHHHHHHHHHHhccCh
Confidence 589999999999999999999999998765432 33444444 789999999999999999999999976 44
Q ss_pred ccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 011900 101 IIE-VDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLG 179 (475)
Q Consensus 101 l~~-l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~~~~~~~~~~~~~~vl~L~aGs~~~~wL~e~it~g~GiG 179 (475)
..+ .+||+|+||||+|++||++|+++|++||.+++..+.++...+.+..++..++++|++|+++++||||+||| ||+|
T Consensus 81 ~l~~~~~~g~~gr~k~~~~tr~lt~~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~v~~L~~Gs~~~~wL~e~it~-~GiG 159 (410)
T TIGR00967 81 LLQLQKKEGEIGRRKINQLTRYLTLILAFIQSLGIVMTGMYGYVGDPGAFFYLLIVIQLTTGSMIVMWLGEQITK-YGIG 159 (410)
T ss_pred HHHHHhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-cCcc
Confidence 444 44569999999999999999999999999998434433223334556788999999999999999999999 9999
Q ss_pred chhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHHhhcCCccHHHHHHHHHHHHHhh
Q 011900 180 SGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVV 259 (475)
Q Consensus 180 nG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vV 259 (475)
||+|++|++||+++++|+++++.+.... +...+.++++| +|++..+++++++++++|
T Consensus 160 nG~SliI~~gI~~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~~--~~~~~~~~~~~~~~~~~v 216 (410)
T TIGR00967 160 NGISLLIFAGIIATIPSGLLQPTEVRQS---------------------KVRDLISFLQN--LPFLLYLIATIIVFAVVV 216 (410)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhhh---------------------hccchhhHHHH--HHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998875421100 00111223333 355777888889999999
Q ss_pred heeccEEEEeeeeccCCC-----CCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhhcCCcchhhccccccccccCC
Q 011900 260 YFQGFKVVLPVRSKNARG-----QQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG 334 (475)
Q Consensus 260 ~l~~~~~rIPi~~~~~~~-----~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 334 (475)
++|++|||||+||+|+++ +++|+|+|+||+|+||+|||+|++++|+++++++.+.++.+ |
T Consensus 217 ~~~~~~~~IPi~~~~~~~~~~~~~~~~iPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~--------~------- 281 (410)
T TIGR00967 217 FVQQARRKIPIQSAKRQGGRRGSQSTYLPLKLNYAGVIPVIFASALLSNPATISQFLNSNQGGA--------W------- 281 (410)
T ss_pred eeeeeEEEEEEEEhhhhcCCCCCccceeeeEeeccccHHHHHHHHHHHHHHHHHHHhcCCcchh--------H-------
Confidence 999999999999998655 78999999999999999999999999999998874321110 1
Q ss_pred CccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHcCCccccccCc-hhHHH
Q 011900 335 HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS-NLQKE 413 (475)
Q Consensus 335 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk~g~~IpGiRpg-~T~~y 413 (475)
+.+++.++. ..+|+|.++|.+++++| ||+|+++. +||||+||||||+|++|||+||| +|+||
T Consensus 282 ----------~~~~~~~~~--~~~p~~~~~y~~lii~F----s~f~~~~~-~~p~~iA~~lkk~g~~IpGiRpG~~T~~y 344 (410)
T TIGR00967 282 ----------FLNPILSLS--LSDPIGAILYLILIIFF----SFFYVELQ-LNPEDMAKNLKKQGMFIPGIRPGKMTEKY 344 (410)
T ss_pred ----------HHHHHHhcC--CcccHHHHHHHHHHHHH----HHHHHHHc-cCHHHHHHHHHHCCCcCCCcCCChhHHHH
Confidence 112222111 25789999996666655 58888854 99999999999999999999999 99999
Q ss_pred HHhhchhhhhHHHHHHHHHHHhHHHHhccc--------ccchhHHHHHHHHHHHHHHHHHhhhcc
Q 011900 414 LNRYIPTAAAFGGVCIGALTVLADFMGAIG--------SGTGILLAVTIIYQYFETFEKERASEL 470 (475)
Q Consensus 414 L~k~i~~~t~~Ga~~l~~la~lp~~~~~~g--------~GTslLI~Vgv~~~~ye~~~~e~~~~~ 470 (475)
|+|+++|+|++||++++++|++|++++..+ ||||+||+||++++++||+++|..+|+
T Consensus 345 L~~~i~~~t~~Gai~l~~ia~~p~l~~~~~~~~~~~~~ggtsiLI~Vgv~~~~~~qi~~~~~~~~ 409 (410)
T TIGR00967 345 LKRVIPRLTFVGSLFLGLIALLPNFLGAIGGLPTSKGLGGTSLLIVVGVAIDTYKQLESYLISRN 409 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCchHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998654 499999999999999999999988774
No 7
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=1.4e-85 Score=688.53 Aligned_cols=379 Identities=20% Similarity=0.307 Sum_probs=302.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHcccccCCCcccCcCC----ChhhHHHHHH---hhcccccccccchhHHhHHHHHHHHh
Q 011900 25 DRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGA----DPFYWMRVIL---ASNRGTVMELGITPIVTSGLVMQLLA 97 (475)
Q Consensus 25 ~~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~~----~~~~~~~~~~---a~~~~slfsLGI~PyItAsIi~QLl~ 97 (475)
++++|+|+|++||++++++||+|++||+||+|.+..+ +.++++.++| +++|+|+|+|||+|||||||+|||++
T Consensus 9 ~~~~~lr~ril~Tl~il~iyrlG~~IPiPGi~~~~~~~~~~~~~~~~~~~fsGG~~~~~sifsLGI~PyItAsII~QLL~ 88 (434)
T PRK12907 9 MRVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKVQDQANVLGMLNVFGGGALQHFSIFAVGITPYITASIIVQLLQ 88 (434)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHhhhhhhhHHHHHHHHhccccccChHHHHccHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999986532 2366777887 46999999999999999999999996
Q ss_pred cC---cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---c--ccccchhHHHHHHHHHHHHHHHHHHHh
Q 011900 98 GS---KIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYG---S--VSQLGAGNAILIILQLCFAGIIVICLD 169 (475)
Q Consensus 98 ~~---kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~---~--~~~~~~~~~~~~vl~L~aGs~~~~wL~ 169 (475)
.. ++++++||+|+||||+|++|||+|+++|++||+++++. +.. . ..+.++...+.++++|++|++++||||
T Consensus 89 ~~~~p~l~~l~kege~gr~k~~~~tR~ltl~la~iQs~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~l~WL~ 167 (434)
T PRK12907 89 MDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGMSYG-FNNIAGGQLITDQSWTTYLFIATVLTAGTAFLLWLG 167 (434)
T ss_pred hccCccHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccCCccccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 66677799999999999999999999999999998763 321 1 112234456777899999999999999
Q ss_pred hhhhccccccchhHHHHHHHHHHHhHHhhcCccccc--CCCCccchhhHHHHHHHHHhhchhhhHHHHHHhhcCCccHHH
Q 011900 170 ELLQKGYGLGSGISLFIATNICESIIWKAFSPTTIN--SGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITN 247 (475)
Q Consensus 170 e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~--~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 247 (475)
|+||| ||+|||+|++|++||+++++..+-+ ... ... .+.. + ..+. ...++.
T Consensus 168 e~It~-~GIGnGiSliI~~gIv~~~p~~~~~--~~~~~~~~----~~~~--~-------------~~~~-----~~~~~~ 220 (434)
T PRK12907 168 EQITA-NGVGNGISMLIFAGLVAAIPNVANQ--IYLQQFQN----AGDQ--L-------------FMHI-----IKMLLI 220 (434)
T ss_pred HHHhc-CCcCcccHHHHHHHHHHHHHHHHHH--HHHHHhhc----cCch--h-------------hhhH-----HHHHHH
Confidence 99998 9999999999999999999533211 000 000 0000 0 0000 000233
Q ss_pred HHHHHHHHHHhhheeccEEEEeeeeccC-------CC-CCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 011900 248 LLATVLVFLIVVYFQGFKVVLPVRSKNA-------RG-QQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNF 319 (475)
Q Consensus 248 ~~~~l~~~~~vV~l~~~~~rIPi~~~~~-------~~-~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~ 319 (475)
+++++++++++|++|++|||||+||+|+ ++ +++|+|+|+|++||||+|||||++++|+++++++.. +.
T Consensus 221 ~~~~~~~i~~~v~v~~~~rrIPi~ya~r~~~~~~~~~~~~syiPlKvN~aGvmPiIFAssll~~p~~i~~~~~~----~~ 296 (434)
T PRK12907 221 GLVILAIVVGVIYIQQAVRKIPIQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPD----SS 296 (434)
T ss_pred HHHHHHHHHHHhheeeeeEEEEEEEchhhccccccCCCcCceeeeeEcccCChHHHHHHHHHHHHHHHHHHhCC----Ch
Confidence 4445577778999999999999999853 23 568999999999999999999999999999988632 11
Q ss_pred hhhccccccccccCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHcC
Q 011900 320 FVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQ 399 (475)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk~g 399 (475)
+.+ |. ..+++| .+|+|.++|.+++++|| |||+.++ +||||+||||||+|
T Consensus 297 ~~~----~~--------------~~~~~~--------~~~~~~~~y~~lii~Fs----~fyt~i~-~nP~~iAenL~k~G 345 (434)
T PRK12907 297 VSK----WL--------------VANLDF--------AHPIGMTLYVGLIVAFT----YFYAFIQ-VNPEQMAENLKKQN 345 (434)
T ss_pred HHH----HH--------------HHHcCC--------CCcHHHHHHHHHHHHHH----HHHHHHc-cCHHHHHHHHHHCC
Confidence 111 11 123443 46778899988888886 5555666 99999999999999
Q ss_pred CccccccCc-hhHHHHHhhchhhhhHHHHHHHHHHHhHHHHhcc--------cccchhHHHHHHHHHHHHHHHHHh
Q 011900 400 MVMPGHRDS-NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAI--------GSGTGILLAVTIIYQYFETFEKER 466 (475)
Q Consensus 400 ~~IpGiRpg-~T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~--------g~GTslLI~Vgv~~~~ye~~~~e~ 466 (475)
++|||+||| +|+|||+|+++|+|++||++++++|++|++++.. +||||+||+|||+++++||++...
T Consensus 346 ~~IPGiRPGk~T~~yL~~~i~rlt~~Gai~L~~ia~lP~i~~~~~~~~~~~~~gGTslLI~VgV~ldt~~qi~s~l 421 (434)
T PRK12907 346 GYVPGIRPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVFTKIATLPPSAQIGGTSLLIIVGVALETMKTLESQL 421 (434)
T ss_pred CcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCcccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999999998754 599999999999999999987654
No 8
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=100.00 E-value=6.2e-84 Score=676.12 Aligned_cols=380 Identities=19% Similarity=0.302 Sum_probs=310.5
Q ss_pred cccccchHHHHHHHHHHHHHHHHcccccCCCcccCcC-----CChhhHHHHHH---hhcccccccccchhHHhHHHHHHH
Q 011900 24 ADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG-----ADPFYWMRVIL---ASNRGTVMELGITPIVTSGLVMQL 95 (475)
Q Consensus 24 p~~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~-----~~~~~~~~~~~---a~~~~slfsLGI~PyItAsIi~QL 95 (475)
-+|++|+|+|++||++++++||+|+|||+||+|.+.. .|++.++++++ +.+|+|+|+|||+|||||||+||+
T Consensus 4 ~~~~~~l~~ri~~Tl~~L~iy~lg~~IPlpGv~~~~~~~~~~~~~~~~~~~~~sgg~~~~~slf~LGI~PyItAsII~QL 83 (417)
T CHL00161 4 SKKKDELLNRLLFTLGLLLLIRLGTFIPVPGIDHTQLYPSLSNNPLLNLLNTFSGGGFFVIGLFALGILPYINASIIIQL 83 (417)
T ss_pred cccCccHHHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHhhccccHHHHHHHHcCCCcccCcHHHHCcHHHHHHHHHHHH
Confidence 4678899999999999999999999999999998753 36788999988 478899999999999999999999
Q ss_pred HhcC--cccccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHhhhh
Q 011900 96 LAGS--KIIEVDNN-VREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELL 172 (475)
Q Consensus 96 l~~~--kl~~l~k~-~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~~~~~~~~~~~~~~vl~L~aGs~~~~wL~e~i 172 (475)
++.. ++.+++|| +|+||||+|++||++|+++|++||.+++.+ ......+.+....+.++++|++|+++++||||+|
T Consensus 84 l~~~~p~l~~l~k~~g~~gr~k~~~~tr~ltl~la~iqa~~~~~~-~~~~~~~~~~~~~~~~v~~L~~Gt~~~~wL~e~i 162 (417)
T CHL00161 84 LTSIIPSLEKLQKEEGEAGRRKINQYTRYLTLGWAIIQSIGISFW-LKPYLFNWNLLLALEIVLALTSGSMIVLWLSELI 162 (417)
T ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9876 78888887 999999999999999999999999999874 2211112233467889999999999999999999
Q ss_pred hccccccchhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHHhhcCCccHHHHHHHH
Q 011900 173 QKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATV 252 (475)
Q Consensus 173 t~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 252 (475)
|| ||+|||+|++|++||+++++..+.+- .. ..+++... +..+..+++++
T Consensus 163 t~-~GiGnGiSliI~~~I~~~~p~~~~~~--~~-------------------~~~~~~~~---------~~~~~~~~~~~ 211 (417)
T CHL00161 163 TE-KGLGNGSSLLIFFNIVSNLPKLLQSL--LF-------------------SLSANITI---------LSILLLLFLFF 211 (417)
T ss_pred Hh-cCcCcchHHHHHHHHHHHHHHHHHHH--HH-------------------HhccchhH---------HHHHHHHHHHH
Confidence 99 99999999999999999995332110 00 00000000 00134445677
Q ss_pred HHHHHhhheeccEEEEeeeeccCCC------CCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhhcCCcchhhcccc
Q 011900 253 LVFLIVVYFQGFKVVLPVRSKNARG------QQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGK 326 (475)
Q Consensus 253 ~~~~~vV~l~~~~~rIPi~~~~~~~------~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~ 326 (475)
+++++++++|++|||||+||+|+++ +++|+|+|+||+|+||+|||+|++++|+++++++++.+.. +
T Consensus 212 ~vi~~vv~~~~~~rrIPi~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~--------~ 283 (417)
T CHL00161 212 ITLIGIIFLQEAIRKIPLISAKQLGKSSRLASNSYLPLRLNQAGVMPIIFASALLVLPGYLTNILLNQFLL--------P 283 (417)
T ss_pred HHHHHHHHhhcceEEEEEEEhhhhccccccCccceeeeehhccCchHHHHHHHHHHHHHHHHHHhcccchh--------h
Confidence 8888999999999999999987654 7899999999999999999999999999999987432111 1
Q ss_pred ccccccCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHcCCcccccc
Q 011900 327 WKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR 406 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk~g~~IpGiR 406 (475)
+. ....++++ ..+.|.++|.+++++| ||+|++++ +||||+||||||+|++|||+|
T Consensus 284 ~~------------~~~~~~~~--------~~~~y~~~y~~lii~F----s~f~~~i~-~~p~~iA~~Lkk~g~~IpGvR 338 (417)
T CHL00161 284 LL------------SLFLQLAS--------FKILYLVLYFVLILFF----SYFYSTIV-LNPKDISENLQKMAVSIPGIR 338 (417)
T ss_pred HH------------HHHhcCCc--------ccHHHHHHHHHHHHHH----HHHHHHHh-cCHHHHHHHHHHCCCcCCCcC
Confidence 10 11122321 3566666666666655 58899999 999999999999999999999
Q ss_pred Cc-hhHHHHHhhchhhhhHHHHHHHHHHHhHHHHhcc-------c-ccchhHHHHHHHHHHHHHHHHHhhh
Q 011900 407 DS-NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAI-------G-SGTGILLAVTIIYQYFETFEKERAS 468 (475)
Q Consensus 407 pg-~T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~-------g-~GTslLI~Vgv~~~~ye~~~~e~~~ 468 (475)
|| +|+|||+|+++|+|++||++++++|++|++++.. + ||||+||+||++++++||++....+
T Consensus 339 pG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~l~~~~~~~~~~~~~ggtslLI~Vgv~~~~~~qi~a~~~~ 409 (417)
T CHL00161 339 PGKATTKYLKKTLNRLTLLGALFLAFIALLPNLIESVLNLSVFKGLGTTSLLILVGVAIDTSRQIQTYLIS 409 (417)
T ss_pred CChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99 9999999999999999999999999999999754 3 8999999999999999999876533
No 9
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=1.1e-81 Score=655.04 Aligned_cols=370 Identities=16% Similarity=0.237 Sum_probs=301.8
Q ss_pred cccccchHHHHHHHHHHHHHHHHcccccCCCcccCcCCC---hhhHHHHHH---hhcccccccccchhHHhHHHHHHHHh
Q 011900 24 ADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGAD---PFYWMRVIL---ASNRGTVMELGITPIVTSGLVMQLLA 97 (475)
Q Consensus 24 p~~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~~~---~~~~~~~~~---a~~~~slfsLGI~PyItAsIi~QLl~ 97 (475)
-++++|+|+|++||++++++||+|++||+||+|.++..| .+.++.+.+ +++|+|+|+|||+|||||||+||||+
T Consensus 6 ~~~~~~l~~ki~~Tl~~l~iyrlG~~IPiPGi~~~~~~~~~~~~~~~~~~fsGG~~~~~slfsLGI~PyItAsII~QLL~ 85 (404)
T PRK12417 6 KFEYKIIYKKILFTCFILFIYILGSNISIPFVSYNDMLGGHESFLKIAAANTGGDLRTLNIFSLGLGPWMTSMIILQLFS 85 (404)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHhccCcCCCCCHHHhcCccchHHHHHHHhcccccccCcHHHHccHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999876544 355666666 47889999999999999999999999
Q ss_pred cCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 011900 98 GSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYG 177 (475)
Q Consensus 98 ~~kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~~~~~~~~~~~~~~vl~L~aGs~~~~wL~e~it~g~G 177 (475)
..|+.++||+.+|++.+ .|||+|+++|++||++++.+..+.. ..+..+++.++++|++|++++|||||+||| ||
T Consensus 86 ~~~~~~l~~~~kee~gr---~~r~ltl~la~iQs~~~~~~~~~~~--~~~~~~~~~~~l~L~aGt~~~~WL~E~it~-~G 159 (404)
T PRK12417 86 YRKRDGLMKQTIEEQHY---RERILTLIIAVIQSLAVILSLPSKE--RISQTNILLNTLILVTGTMFLVWLSDLNAR-YG 159 (404)
T ss_pred hCCCcchhhcChHHHHH---HHHHHHHHHHHHHHHHHHHHhcccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 88777777764433222 3699999999999999987522211 111236778999999999999999999998 99
Q ss_pred ccchhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHHhhcCCccHHHHHHHHHHHHH
Q 011900 178 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLI 257 (475)
Q Consensus 178 iGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 257 (475)
+| |+|++|++||++++++++++.. .. .+.. ....+.+.++++++
T Consensus 160 IG-G~SliI~~~Iv~~~p~~~~~~~--~~---------~~~~------------------------~~~~~~~~~~~i~~ 203 (404)
T PRK12417 160 IG-GPMPIVLVSMIKSIPQDVIEYI--DA---------SHIV------------------------IILLILLVIITLFF 203 (404)
T ss_pred cc-HHHHHHHHHHHHHHHHHHHHHH--HH---------HHHH------------------------HHHHHHHHHHHHHH
Confidence 99 9999999999999987775421 00 0000 02233344455667
Q ss_pred hhheeccEEEEeeeeccC---CCCCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhhcCCcchhhccccccccccCC
Q 011900 258 VVYFQGFKVVLPVRSKNA---RGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG 334 (475)
Q Consensus 258 vV~l~~~~~rIPi~~~~~---~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 334 (475)
++++|++|||||+||+++ +.+++|+|+|+|+|||||+|||||++++|+++++++++.++++.+.+ +
T Consensus 204 ~v~~~~~~rrIPi~~~~~~~~~~~~sylPiKlN~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~----~------- 272 (404)
T PRK12417 204 LYFIELVEYRIPYNDIMNHNRFKMYSYLSIKLNPAGGMPIMYSMSLLVFPQYIIILILSIFPNNSGIS----A------- 272 (404)
T ss_pred HHHHhheEEEEEEEEhhhhccCCCCcceeeeecccccHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHH----H-------
Confidence 899999999999999765 23678999999999999999999999999999998866555543222 1
Q ss_pred CccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHcCCccccccCc-hhHHH
Q 011900 335 HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS-NLQKE 413 (475)
Q Consensus 335 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk~g~~IpGiRpg-~T~~y 413 (475)
...++++ .+|+|.++|++++++||++|++.| +||||+||||||+|++|||+||| +|+||
T Consensus 273 -------~~~~~~~--------~~~~~~~~y~~lii~fs~fys~i~-----~nP~diAe~lkk~g~~IpGiRPG~~T~~y 332 (404)
T PRK12417 273 -------DMDMLSF--------GSPLGVTVYLILQFLLSYFFSFVN-----INTKQIAKDMLKSGNYIPGVYPGKDTERY 332 (404)
T ss_pred -------HHHHcCC--------CCcHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHCCCcccCCCCChHHHHH
Confidence 1122332 578899999999999998777776 99999999999999999999999 99999
Q ss_pred HHhhchhhhhHHHHHHHHHHHhHHHHhcc--------cccchhHHHHHHHHHHHHHHHHHh
Q 011900 414 LNRYIPTAAAFGGVCIGALTVLADFMGAI--------GSGTGILLAVTIIYQYFETFEKER 466 (475)
Q Consensus 414 L~k~i~~~t~~Ga~~l~~la~lp~~~~~~--------g~GTslLI~Vgv~~~~ye~~~~e~ 466 (475)
|+|+++|+|++||++++++|++|.+++.. .+|||+||+|||++++.||++...
T Consensus 333 L~~vi~r~t~~Gai~l~~ia~lP~~~~~~~~~~~~~~~ggtsllI~Vgv~ldt~~qi~s~l 393 (404)
T PRK12417 333 LNYIARRFSWFGALFVTVIAGIPLYFTLFDPHLSTEIYFSGQFMMFVGMSFNIADEIRALL 393 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccceeccchheehhhhHHHHHHHHHHHH
Confidence 99999999999999999999999998632 389999999999999999987654
No 10
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=100.00 E-value=1.3e-77 Score=624.20 Aligned_cols=366 Identities=19% Similarity=0.303 Sum_probs=295.1
Q ss_pred chHHHHHHHHHHHHHHHHcccccCCCcccCcC-----CChhhHHHHHH---hhcccccccccchhHHhHHHHHHHHhcCc
Q 011900 29 PFREKVIYTVISLFIFLVCSQLPLYGIHSTTG-----ADPFYWMRVIL---ASNRGTVMELGITPIVTSGLVMQLLAGSK 100 (475)
Q Consensus 29 ~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~-----~~~~~~~~~~~---a~~~~slfsLGI~PyItAsIi~QLl~~~k 100 (475)
.+|+|++||++++++||+|++||+||+|.+.. .+..+++.+.+ +.+|+|+|+|||+|||||||+|||++..+
T Consensus 1 ~~~~ri~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~~~~~~l~~l~~~~gg~~~~~slfsLGI~PyItAsIi~QLL~~~~ 80 (395)
T TIGR02920 1 IIYKKILFTCFILIIYVLGSYIPIPFVEVSKQDMEGVKNSFFKIAIANTGGNLTTLSIFSLGLGPWMTSMIILQLFSFTK 80 (395)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCCCcChhhHHHhcccccHHHHHHHHhcCccccCcHHHhCcHHHHHHHHHHHHHHhCc
Confidence 47999999999999999999999999998752 12244455555 35677999999999999999999999877
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 011900 101 IIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGS 180 (475)
Q Consensus 101 l~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~~~~~~~~~~~~~~vl~L~aGs~~~~wL~e~it~g~GiGn 180 (475)
+.++|+..+|+| ++.||++|+++|++||.+++++..+.. .........++++|++|+++++||||+||| ||+|
T Consensus 81 ~~~l~~~~~~~~---~~~tr~ltl~~a~iQs~~~~~~~~~~~--~~~~~~~~~~vl~L~~Gt~iv~wL~E~it~-~GiG- 153 (395)
T TIGR02920 81 SDGFDAQSPKEQ---QYRERFLTLIIAIIQGLAIIHSFTNKN--GLSDFNMLLATLILVTGTCLLVWLADLNAK-YGIG- 153 (395)
T ss_pred CcchhhhCHHHh---hHHHHHHHHHHHHHHHHHHHHHhhccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHhC-CCcc-
Confidence 777887766555 346999999999999999987522211 111235677899999999999999999998 9999
Q ss_pred hhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHHhhcCCccHHHHHHHHHHHHHhhh
Q 011900 181 GISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVY 260 (475)
Q Consensus 181 G~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vV~ 260 (475)
|+|++|++||+++++++.++..+. + .+... .+..++++++++++++
T Consensus 154 G~sllI~~~I~s~~~~~~~~~~~~----~---~~~~~---------------------------~~~~~~~~~~i~~~v~ 199 (395)
T TIGR02920 154 GSMPIVLVSMLKNIPSNVFELFQM----S---YIWLI---------------------------ALLILLTLVALFLLAF 199 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc----c---hHHHH---------------------------HHHHHHHHHHHHHHHh
Confidence 999999999999998877653210 0 01110 2233445566667899
Q ss_pred eeccEEEEeeeeccC--C-CCCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhhcCCcchhhccccccccccCCCcc
Q 011900 261 FQGFKVVLPVRSKNA--R-GQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSI 337 (475)
Q Consensus 261 l~~~~~rIPi~~~~~--~-~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 337 (475)
+|++|||||++|+++ + ++++|+|+|+||+|+||+||||+++++|+++++.+.+.++++.+ +++|.
T Consensus 200 ~~~~~~rIpv~~~~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~---~~~~~--------- 267 (395)
T TIGR02920 200 IERAEYRIPVNDISLHNRSNLMSYLPIKLNPAGGMMYMYVMSLLMLPQYIIILLGRIFPNSSL---INNWV--------- 267 (395)
T ss_pred eecceEEEEEEEchhhccCCCCcccceEecccCcHHHHHHHHHHHHHHHHHHHHHHHccCCch---HHHHh---------
Confidence 999999999999874 3 46788999999999999999999999998877666544333321 11221
Q ss_pred ccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHcCCccccccCc-hhHHHHHh
Q 011900 338 PVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS-NLQKELNR 416 (475)
Q Consensus 338 ~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk~g~~IpGiRpg-~T~~yL~k 416 (475)
..++ ..+|.|.++|.+++++||++||+.| +||||+||||||+|++|||+||| +|+|||+|
T Consensus 268 ------~~~~--------~~~~~~~i~y~~lii~fs~fys~i~-----~nP~diA~~Lkk~g~~IpGiRpG~~T~~yL~~ 328 (395)
T TIGR02920 268 ------FQFS--------FSSPVGILIYLILQMLLSYFFTFVN-----INPKEISKSFRKSGNYIPGIAPGKDTQRYLNR 328 (395)
T ss_pred ------hccC--------CcchHHHHHHHHHHHHHHHHHHHhe-----ECHHHHHHHHHHCCCCccCcCCCchHHHHHHH
Confidence 1122 2578999999999999998888777 99999999999999999999999 99999999
Q ss_pred hchhhhhHHHHHHHHHHHhHHHHhcc--------cccchhHHHHHHHHHHHHHHHHHh
Q 011900 417 YIPTAAAFGGVCIGALTVLADFMGAI--------GSGTGILLAVTIIYQYFETFEKER 466 (475)
Q Consensus 417 ~i~~~t~~Ga~~l~~la~lp~~~~~~--------g~GTslLI~Vgv~~~~ye~~~~e~ 466 (475)
+++|+|++||++++++|++|++++.. .+|||+||+|||++++.||++...
T Consensus 329 ~i~~~t~~Gai~l~~ia~lP~~~~~~~~~~~~~~~ggtsllI~vgv~ldt~~qi~~~~ 386 (395)
T TIGR02920 329 LARRFCWFGGVFNAFQLGIPLYFALFVPHLLTEAYIPGQFMMITGMSFNIADEIRTIL 386 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeehhhhhhhhhhhHHhHHHHHHHHH
Confidence 99999999999999999999998632 389999999999999999988754
No 11
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=100.00 E-value=1.4e-71 Score=571.65 Aligned_cols=327 Identities=35% Similarity=0.574 Sum_probs=270.3
Q ss_pred ccccccchhHHhHHHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccc------ccchh
Q 011900 77 TVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMS-GMYGSVS------QLGAG 149 (475)
Q Consensus 77 slfsLGI~PyItAsIi~QLl~~~kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~-g~~~~~~------~~~~~ 149 (475)
|+|||||+|||||||+||++...++.++||++|+||||++++||++|+++|++||++++.. +.++... +.++.
T Consensus 1 SlfsLGI~PyitAsIi~Qll~~~~l~~l~~~g~~~~~~~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PF00344_consen 1 SLFSLGIGPYITASIIMQLLIIPKLIKLQKEGEEGRKKLNRYTRYLTLILAVIQAIGIVLSLGYYGSVSPLILSSGSGFI 80 (346)
T ss_dssp BTTSSTTHHHHHHHHHHHHHHSSSSSSHSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTC-TTSTTCHH
T ss_pred ChHhhccHHHHHHHHHHHHHhcccHHHhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchHHH
Confidence 7999999999999999999988899999999999999999999999999999999999953 2222211 12455
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHh-hch
Q 011900 150 NAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLIT-KQN 228 (475)
Q Consensus 150 ~~~~~vl~L~aGs~~~~wL~e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~-~~~ 228 (475)
..++++++|++|+++++||||+||| ||+|||+|++|++||+++++|++.+.. +.+.. ...
T Consensus 81 ~~~~i~l~L~~G~~i~~wL~e~it~-~GiGnG~SliI~~~I~~~~~~~i~~~~------------------~~~~~~~~~ 141 (346)
T PF00344_consen 81 NYLLIVLQLVAGSMILIWLSELITK-YGIGNGISLIIFAGIISNLPWSIINLF------------------QLLSNKAGS 141 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-CSSSTHHHHHHHHHHHHHHHHHHHHHH------------------HHHHTTCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cCcccchHHHHHHHHHHHHHHHHHHHH------------------HHHHHhhcc
Confidence 6789999999999999999999999 999999999999999999987753211 11000 000
Q ss_pred hhhHHHHHHhhcCCccHHHHHHHHHHHHHhhheeccEEEEeeeeccC----CCCCcceeeccccccchhHHHHHHHHHHH
Q 011900 229 KVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNA----RGQQGAYPIKLFYTSNMPIILQSALVSNL 304 (475)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~----~~~~~yiPiKln~aGvmPiIfassll~~p 304 (475)
..+.+ ..+..+++++++++++|++|++|||||++|+|+ +++++|+|+|+||+|+||+||+++++++|
T Consensus 142 ~~~~~---------~~l~~~~~~l~~~~~~v~l~~~~~rIPi~~~~~~~~~~~~~~ylPikln~aG~mPiifa~sll~~p 212 (346)
T PF00344_consen 142 LSNAL---------FLLIILIITLVVIALVVYLQEAERRIPIQYARIVNSSRGQSSYLPIKLNYAGVMPIIFASSLLSLP 212 (346)
T ss_dssp SSSTH---------HHHHHHHHHHHHHHHHHHHHHCEEEECEBBSSSB--SSSBCSCEEEETTSSTHHHHHHHHHHHHHH
T ss_pred cccHH---------HHHHHHHHHHHHHHhheeeeeeEEEEEEEeccccccCcccceeeeeeccccccchHHHHHHHHHHH
Confidence 00000 015667788888999999999999999999998 88999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcchhhccccccccccCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhc
Q 011900 305 YFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVS 384 (475)
Q Consensus 305 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~ 384 (475)
+++++++++.++++ .+.+++.++++. .+.+|+|.++|.+++++| |++|+ ..
T Consensus 213 ~~i~~~l~~~~~~~------------------~~~~~i~~~~~~------~~~~~~y~~~~~~li~~F----s~~~~-~~ 263 (346)
T PF00344_consen 213 QYIAQFLNSQFPNN------------------WLVSGIAYYFSQ------NLNSPLYIIFYLILIILF----SYFFS-FI 263 (346)
T ss_dssp HHHHHHCTTCSCCS------------------CCSSCCHHHTSS------SHHHHHHHHHHHHHHHHH----HHHHH-TS
T ss_pred HHHHHhccCCCccc------------------cHHHHHHHHhcc------CcchHHHHHHHHHHHHHH----HHHHh-hc
Confidence 99999886654332 122345666621 124556666666655555 57787 44
Q ss_pred CCChHHHHHHHHHcCCccccccCc-hhHHHHHhhchhhhhHHHHHHHHHHHhHHHHhccc------ccchhHHHHHHHHH
Q 011900 385 GSSARDVAKQLKEQQMVMPGHRDS-NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIG------SGTGILLAVTIIYQ 457 (475)
Q Consensus 385 g~~p~~iAe~Lkk~g~~IpGiRpg-~T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~g------~GTslLI~Vgv~~~ 457 (475)
++||||+||||||+|++|||+||| +|+|||+|+++|++++||+++++++++|++++..+ +|||++|+||++++
T Consensus 264 ~~~p~~iA~~lkk~g~~I~GirpG~~T~~yL~~~i~~~~~~G~~~l~~ia~~p~~~~~~~~~~~~~~gtslli~V~v~~~ 343 (346)
T PF00344_consen 264 NINPKDIAENLKKSGDYIPGIRPGKPTEKYLNKVIPRLSFLGALFLALIAVLPLIFGLFGGSSLFFGGTSLLIIVGVIID 343 (346)
T ss_dssp SSHHHHHHHHCHCTTSSSSTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCSCCCTHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCEeCCCCCChhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHH
Confidence 499999999999999999999999 99999999999999999999999999999999988 99999999999999
Q ss_pred HHH
Q 011900 458 YFE 460 (475)
Q Consensus 458 ~ye 460 (475)
++|
T Consensus 344 ~~~ 346 (346)
T PF00344_consen 344 TYE 346 (346)
T ss_dssp HHH
T ss_pred hcC
Confidence 987
No 12
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side. The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 []. ; PDB: 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A 1RH5_A 3BO1_A 3BO0_A 2WWA_A 2WW9_A ....
Probab=97.43 E-value=6.9e-05 Score=51.65 Aligned_cols=35 Identities=57% Similarity=1.233 Sum_probs=30.4
Q ss_pred HHHHHcccccCCCcccCcCCChhhHHHHHHhhccc
Q 011900 42 FIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRG 76 (475)
Q Consensus 42 ~iy~lgs~IPlpGi~~~~~~~~~~~~~~~~a~~~~ 76 (475)
++|.++++||++|++.....|++.++|.++|++++
T Consensus 1 ilYl~ls~ipLyG~~~~~~~D~f~~~R~i~As~~G 35 (35)
T PF10559_consen 1 ILYLFLSQIPLYGLQSASSSDPFYWLRAIFASNRG 35 (35)
T ss_dssp HHHHHHHHSB-STSTTTTSSCCHTTTHHHHTSSTT
T ss_pred CEEEEeeCCccccccCCCcCCHHHHHHHHHcccCC
Confidence 58999999999999777888999999999998764
No 13
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=57.01 E-value=16 Score=31.42 Aligned_cols=45 Identities=24% Similarity=0.303 Sum_probs=28.6
Q ss_pred hhHHhHHHHHHHHhcCc---ccccccccHHHHHHHHHHHHHHHHHHHH
Q 011900 84 TPIVTSGLVMQLLAGSK---IIEVDNNVREDRALLNGAQKLLGILIAI 128 (475)
Q Consensus 84 ~PyItAsIi~QLl~~~k---l~~l~k~~~~gr~k~~~~tr~ltl~la~ 128 (475)
.=.++.||++|++.+.- ..+.+-+.++.+++.++...+.+....+
T Consensus 45 l~Li~iSlvLQv~vgilli~~~~~n~~~~~~~~~~~~lnn~~~~~v~i 92 (104)
T PF04923_consen 45 LTLISISLVLQVVVGILLIFISRYNINKPEKQRRANRLNNWATILVFI 92 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999872 2224445555566677766666655433
No 14
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=55.96 E-value=53 Score=31.19 Aligned_cols=49 Identities=16% Similarity=0.225 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHcCCccccccCc--hhHHHHHhhc
Q 011900 359 PFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS--NLQKELNRYI 418 (475)
Q Consensus 359 ~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk~g~~IpGiRpg--~T~~yL~k~i 418 (475)
-++..++.+++.++|++++|-| ..+||+|++. =|..||. +|.|-++.-+
T Consensus 58 gl~~a~~gl~~l~~si~~~fry--------~Rlar~L~~~---~~~~~P~k~~~~~~l~~Gl 108 (183)
T PF12263_consen 58 GLFLAICGLVALFFSIFWSFRY--------TRLARRLRSP---NPAKRPSKADVVRLLRIGL 108 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhccc---CCCCCCCHHHHHHHHHHHH
Confidence 4567788889999999888887 6778999954 5788996 7888776644
No 15
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=50.35 E-value=11 Score=39.67 Aligned_cols=64 Identities=19% Similarity=0.396 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh-HhhcC---CChHHHHHHHHHcCCccccccCc-h----hHHHHHhhchhhhhHH
Q 011900 359 PFHALFYLVFMLTACALFSKTW-IEVSG---SSARDVAKQLKEQQMVMPGHRDS-N----LQKELNRYIPTAAAFG 425 (475)
Q Consensus 359 ~~~~i~y~~lii~fs~~Fs~~~-~~~~g---~~p~~iAe~Lkk~g~~IpGiRpg-~----T~~yL~k~i~~~t~~G 425 (475)
..++++++++++++| +|.| +++.| .+++++.+.|++.|.+-.=.+.. + .++.|.+-++-++++|
T Consensus 91 ~~G~~~f~~~l~~lS---~fIW~IeI~Gn~~~~~~~I~~~L~e~Gi~~G~~k~~id~~~~ie~~l~~~~~~i~WV~ 163 (385)
T PF06898_consen 91 VAGIVLFLALLYILS---SFIWSIEIEGNEPVTEEEILQFLEENGIKPGAWKFKIDSCEEIEKKLRKQFPDISWVG 163 (385)
T ss_pred HHHHHHHHHHHHHHc---CeEEEEEEECCCCCCHHHHHHHHHHcCCCcCeeecCCChHHHHHHHHHhhCCCeEEEE
Confidence 457788888888887 5788 55554 57899999999988664433444 4 4555555556666554
No 16
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=46.99 E-value=17 Score=38.46 Aligned_cols=63 Identities=27% Similarity=0.463 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh-Hh---hcCCChHHHHHHHHHcCCccccccCc-----hhHHHHHhhchhhhhHH
Q 011900 359 PFHALFYLVFMLTACALFSKTW-IE---VSGSSARDVAKQLKEQQMVMPGHRDS-----NLQKELNRYIPTAAAFG 425 (475)
Q Consensus 359 ~~~~i~y~~lii~fs~~Fs~~~-~~---~~g~~p~~iAe~Lkk~g~~IpGiRpg-----~T~~yL~k~i~~~t~~G 425 (475)
.+++++++++++++| +|.| ++ -...+++++.+.|++.|.. ||.+-. ..++.|.+-.+.++++|
T Consensus 88 ~~G~~~f~~ll~~lS---~fIW~IeI~Gn~~~t~~~i~~~L~e~Gi~-~G~~k~~id~~~ie~~l~~~~~~i~WV~ 159 (382)
T TIGR02876 88 LIGILLFLAIVYFLS---NFIWKIDITGVKGETPYEIRKQLKEMGIK-PGVWKFSVDVYKLERKLLDRVPEIMWAG 159 (382)
T ss_pred HHHHHHHHHHHHHHh---heEEEEEEECCCCCCHHHHHHHHHHcCCC-cCeeeCCCCHHHHHHHHHhhCCCcEEEE
Confidence 567888888888888 6889 33 3336889999999999844 455432 45666666666666665
No 17
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=45.01 E-value=33 Score=28.47 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=33.5
Q ss_pred cCCccccccCc-hhHHHHHhhchhhhhHHHHHHHHHHHh
Q 011900 398 QQMVMPGHRDS-NLQKELNRYIPTAAAFGGVCIGALTVL 435 (475)
Q Consensus 398 ~g~~IpGiRpg-~T~~yL~k~i~~~t~~Ga~~l~~la~l 435 (475)
.|..+||--|| +..-.+.|...+.|.++++.-+++...
T Consensus 32 ~g~vv~Gt~~sAP~~~~l~rk~~~TTiiaavi~~~~~~~ 70 (85)
T PF07330_consen 32 AGEVVPGTDPSAPANPRLKRKALITTIIAAVIFAIIYLI 70 (85)
T ss_pred CCCcCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999 999999999999999999888877654
No 18
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.
Probab=41.40 E-value=27 Score=31.31 Aligned_cols=30 Identities=10% Similarity=0.210 Sum_probs=20.6
Q ss_pred cCCccccccCc-hhHHHHHhhchhhhhHHHHH
Q 011900 398 QQMVMPGHRDS-NLQKELNRYIPTAAAFGGVC 428 (475)
Q Consensus 398 ~g~~IpGiRpg-~T~~yL~k~i~~~t~~Ga~~ 428 (475)
....|||+||| .-.+-+++....- +...+.
T Consensus 37 k~~~ipGFRkGK~P~~vi~~~~g~~-i~~~~~ 67 (145)
T PF05697_consen 37 KKVKIPGFRKGKAPRNVIEKRYGKE-IREEAI 67 (145)
T ss_dssp TTTTBTTS-TTSS-HHHHHHHHCHH-HHHHHH
T ss_pred hhCCCCCCCCCCCCHHHHHHHHHHH-HHHHHH
Confidence 46689999999 7778888877765 544444
No 19
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=39.85 E-value=1.2e+02 Score=33.53 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=38.5
Q ss_pred HHHHHhhchhhhhHHHHHHHHHHHhHHHHhcccccchh-HHHHHHHHHHHHHHHHH
Q 011900 411 QKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGI-LLAVTIIYQYFETFEKE 465 (475)
Q Consensus 411 ~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~g~GTsl-LI~Vgv~~~~ye~~~~e 465 (475)
.+.++|.+..++.+-|-.+.++++.+.++ .||+|+ +-.||+++..-|++.++
T Consensus 307 AEE~qK~mgCvgKIlG~vitaVsvvAAvf---TGGASLAlAaVGlAL~aaDeI~qa 359 (593)
T PRK15374 307 AEETNRIMGCIGKVLGALLTIVSVVAAVF---TGGASLALAAVGLAVMVADEIVKA 359 (593)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888887777777777766554 478887 77899999777766554
No 20
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=28.00 E-value=51 Score=34.21 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=42.5
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHcCCccccccCc-hhHHHHHhhchhhhh
Q 011900 357 ANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS-NLQKELNRYIPTAAA 423 (475)
Q Consensus 357 ~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk~g~~IpGiRpg-~T~~yL~k~i~~~t~ 423 (475)
.++.+...|.++.++.+ .+.+..- ..-..=+|+..|+=-.--+.=|| .--|--+|++.|.-.
T Consensus 237 ~~~~~~~~y~~~~~~li----~~Fs~~~-~~~~~~p~~iA~~lkk~g~~I~GirpG~~T~~yL~~~i~ 299 (346)
T PF00344_consen 237 SQNLNSPLYIIFYLILI----ILFSYFF-SFININPKDIAENLKKSGDYIPGIRPGKPTEKYLNKVIP 299 (346)
T ss_dssp SSSHHHHHHHHHHHHHH----HHHHHHH-HTSSSHHHHHHHHCHCTTSSSSTCTTSCHHHHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHH----HHHHHHH-hhccCCHHHHHHHHHHhCCEeCCCCCChhHHHHHHHHHH
Confidence 35788889988877775 6665654 24455667777766566666777 444888899988443
No 21
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=26.80 E-value=2.2e+02 Score=32.84 Aligned_cols=79 Identities=18% Similarity=0.095 Sum_probs=45.4
Q ss_pred CCChHHHHHHHHHcCCcc-ccccCchhHHHHHhhchhhhhHHHHHHHHHHHhHHHHhccc--ccchhHHHHHHHHHHHHH
Q 011900 385 GSSARDVAKQLKEQQMVM-PGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIG--SGTGILLAVTIIYQYFET 461 (475)
Q Consensus 385 g~~p~~iAe~Lkk~g~~I-pGiRpg~T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~g--~GTslLI~Vgv~~~~ye~ 461 (475)
|++.+|.++++++.|--. |--+|..-.+++++....+.++ +-+.+++..+++.+. ...-++++++..+..+++
T Consensus 1 GLs~~ea~~r~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~l----L~~aa~~s~~~~~~~~~~~i~~~~~i~~~i~~~qe 76 (755)
T TIGR01647 1 GLTSAEAKKRLAKYGPNELPEKKVSPLLKFLGFFWNPLSWV----MEAAAIIAIALENWVDFVIILGLLLLNATIGFIEE 76 (755)
T ss_pred CcCHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhchHHHH----HHHHHHHHHhhcchhhhhhhhhhhHHHHHHHHHHH
Confidence 688999999999999754 3323335566676665555332 222233333444332 222234555666777877
Q ss_pred HHHHhh
Q 011900 462 FEKERA 467 (475)
Q Consensus 462 ~~~e~~ 467 (475)
..+|+.
T Consensus 77 ~~a~~~ 82 (755)
T TIGR01647 77 NKAGNA 82 (755)
T ss_pred HHHHHH
Confidence 666653
No 22
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=25.71 E-value=1.6e+02 Score=35.45 Aligned_cols=82 Identities=11% Similarity=0.130 Sum_probs=47.9
Q ss_pred cCCChHHHHHHHHHcCCccc-cccC-chhHHHHHhhchhhhhHHHHHHHHHHHhHHHHhccc--ccchhHHHHHHHHHHH
Q 011900 384 SGSSARDVAKQLKEQQMVMP-GHRD-SNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIG--SGTGILLAVTIIYQYF 459 (475)
Q Consensus 384 ~g~~p~~iAe~Lkk~g~~Ip-GiRp-g~T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~g--~GTslLI~Vgv~~~~y 459 (475)
.|++.+|+++++++.|.--. --++ ..-+.+++.....+.+ +|-+.+++..+++.+. ...-.++++.+++..+
T Consensus 25 ~GLs~~ea~~rl~~~G~N~l~~~~~~s~~~~~l~q~~~~~~~----iL~~aails~~~~~~~~~~iIl~vv~in~~i~~~ 100 (1053)
T TIGR01523 25 EGLTHDEAQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCM----VLIIAAAISFAMHDWIEGGVISAIIALNILIGFI 100 (1053)
T ss_pred cCCCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhCHHHH----HHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHH
Confidence 58999999999999997643 2222 2456666666555432 2323333333333322 2222345556777888
Q ss_pred HHHHHHhhhc
Q 011900 460 ETFEKERASE 469 (475)
Q Consensus 460 e~~~~e~~~~ 469 (475)
++..+|+.++
T Consensus 101 QE~~aekal~ 110 (1053)
T TIGR01523 101 QEYKAEKTMD 110 (1053)
T ss_pred HHHHHHHHHH
Confidence 8888887544
No 23
>PRK01490 tig trigger factor; Provisional
Probab=23.34 E-value=66 Score=34.31 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=18.1
Q ss_pred cCCccccccCc-hhHHHHHhhchh
Q 011900 398 QQMVMPGHRDS-NLQKELNRYIPT 420 (475)
Q Consensus 398 ~g~~IpGiRpg-~T~~yL~k~i~~ 420 (475)
....|||+||| .-...+++...+
T Consensus 37 k~~~ipGFRkGkvP~~ii~k~~g~ 60 (435)
T PRK01490 37 KTVRIPGFRKGKVPRKIVEQRYGE 60 (435)
T ss_pred hhCcCCCccCCCCCHHHHHHHHhH
Confidence 34799999999 777777777654
No 24
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=22.13 E-value=68 Score=33.87 Aligned_cols=35 Identities=14% Similarity=0.337 Sum_probs=24.2
Q ss_pred CChHHHHHHHH------HcCCccccccCc-hhHHHHHhhchh
Q 011900 386 SSARDVAKQLK------EQQMVMPGHRDS-NLQKELNRYIPT 420 (475)
Q Consensus 386 ~~p~~iAe~Lk------k~g~~IpGiRpg-~T~~yL~k~i~~ 420 (475)
++++++.+.++ +....|||+||| .-...+++...+
T Consensus 7 v~~~~~~~~~~k~~~~~~k~~~ipGFRkGKvP~~~i~k~~g~ 48 (408)
T TIGR00115 7 VPAEEVEEEVDKALKELAKKVKIPGFRKGKVPRSVVEKRYGK 48 (408)
T ss_pred ECHHHHHHHHHHHHHHHHhhCCCCCccCCCCCHHHHHHHHhH
Confidence 44555554443 456799999999 777777777654
No 25
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=21.78 E-value=3.5e+02 Score=20.18 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHHcCCccccccCc--hhHHHHHhhch
Q 011900 385 GSSARDVAKQLKEQQMVMPGHRDS--NLQKELNRYIP 419 (475)
Q Consensus 385 g~~p~~iAe~Lkk~g~~IpGiRpg--~T~~yL~k~i~ 419 (475)
|++.+|+.++.++.|.-.....++ .-+++++....
T Consensus 10 GLs~~~v~~r~~~~G~N~l~~~~~~s~~~~~l~~~~~ 46 (64)
T smart00831 10 GLSSEEAARRLERYGPNELPPPKKRSPLLRFLRQFHN 46 (64)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHh
Confidence 899999999999999776555443 45666655433
No 26
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=20.94 E-value=2.7e+02 Score=32.72 Aligned_cols=81 Identities=11% Similarity=0.142 Sum_probs=46.7
Q ss_pred hhcCCChHHHHHHHHHcCCcc-ccccCc-hhHHHHHhhchhhhhHHHHHHHHHHHhHHHHhccc--ccchhHHHHHHHHH
Q 011900 382 EVSGSSARDVAKQLKEQQMVM-PGHRDS-NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIG--SGTGILLAVTIIYQ 457 (475)
Q Consensus 382 ~~~g~~p~~iAe~Lkk~g~~I-pGiRpg-~T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~g--~GTslLI~Vgv~~~ 457 (475)
+..|++.+|+.+++++.|--. |--++. .-+.+++..-..+.++ +.+.+++..+.+.+. ...-.+++++.++.
T Consensus 30 ~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~p~~~i----L~~~a~ls~~~~~~~~~~iI~~iv~~~~~i~ 105 (867)
T TIGR01524 30 HETGLTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYI----LAMLMGVSYLTDDLEATVIIALMVLASGLLG 105 (867)
T ss_pred CCCCCCHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhHHHHH----HHHHHHHHHHHhhHHHHHHhhhHHHHHHHHH
Confidence 345899999999999999754 333333 5566666655554433 222333333333322 12223555666777
Q ss_pred HHHHHHHHh
Q 011900 458 YFETFEKER 466 (475)
Q Consensus 458 ~ye~~~~e~ 466 (475)
.+++..+|+
T Consensus 106 ~~~e~~a~k 114 (867)
T TIGR01524 106 FIQESRAER 114 (867)
T ss_pred HHHHHHHHH
Confidence 777766654
No 27
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=20.26 E-value=1.8e+02 Score=22.40 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=26.4
Q ss_pred hhcCCChHHHHHHHHHcCCccc-cccCc-hhHHHHHhhchh
Q 011900 382 EVSGSSARDVAKQLKEQQMVMP-GHRDS-NLQKELNRYIPT 420 (475)
Q Consensus 382 ~~~g~~p~~iAe~Lkk~g~~Ip-GiRpg-~T~~yL~k~i~~ 420 (475)
.-.|++.+|+++++++.|.--. --++- ..+++++.....
T Consensus 17 ~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~f~~~ 57 (69)
T PF00690_consen 17 SSQGLSSEEVEERRKKYGPNELPEPKKKSLWRIFLKQFKNP 57 (69)
T ss_dssp TSSBBTHHHHHHHHHHHSSSSTTTTTSSSHHHHHHHHTTSH
T ss_pred CCCCCCHHHHHHHHHhcccccccccccCcHHHHHHHHHHhH
Confidence 3468999999999999997544 33333 566666655544
No 28
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=20.11 E-value=1.4e+02 Score=22.56 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=18.8
Q ss_pred HHhHhhcCCChHHHHHHHHHcCCc
Q 011900 378 KTWIEVSGSSARDVAKQLKEQQMV 401 (475)
Q Consensus 378 ~~~~~~~g~~p~~iAe~Lkk~g~~ 401 (475)
-.|..-.+.+.+++.+.|+++|+|
T Consensus 22 ~~fl~~~~~~~~~vl~~l~~nGg~ 45 (53)
T PF10905_consen 22 RQFLRQRQLDWEDVLEWLRENGGY 45 (53)
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCC
Confidence 344445558999999999999986
No 29
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=20.03 E-value=6.3e+02 Score=28.88 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHcCCccccccCc-hhHHH--HHhhchhhhhHHHHHHHHHHHh-
Q 011900 360 FHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS-NLQKE--LNRYIPTAAAFGGVCIGALTVL- 435 (475)
Q Consensus 360 ~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk~g~~IpGiRpg-~T~~y--L~k~i~~~t~~Ga~~l~~la~l- 435 (475)
.+.++=..+.++|| -.-.+-.|-.+.++-|+-|||=-.+||+..| .-.|| .-++..+.+.=.-+.-++++++
T Consensus 488 ~GlliG~~lpflFs----~l~m~AVg~aA~~mV~EVRrQFre~pGi~eg~~kPdY~~cV~I~T~~AlkeMi~P~ll~v~~ 563 (666)
T PRK00733 488 VGLLIGGMLPFLFS----ALAMTAVGRAAGAMVEEVRRQFREIPGIMEGTAKPDYARCVDISTKAALKEMILPGLLAVLA 563 (666)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34444455555555 3333444478888889999999999999998 55555 4455566665555666677655
Q ss_pred HHHHhcc
Q 011900 436 ADFMGAI 442 (475)
Q Consensus 436 p~~~~~~ 442 (475)
|.+.+.+
T Consensus 564 Pi~vG~~ 570 (666)
T PRK00733 564 PIAVGFL 570 (666)
T ss_pred HHHHHHH
Confidence 7776653
Done!