Query 011900
Match_columns 475
No_of_seqs 134 out of 1096
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 17:36:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011900.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011900hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5a_ f.41.1.1 (A:) Preprote 100.0 2.8E-98 2E-102 782.7 39.8 419 9-466 1-421 (422)
2 d1p9ya_ d.241.2.1 (A:) Trigger 61.7 2.2 0.00016 34.0 2.8 35 386-420 19-60 (117)
3 d1t11a2 d.241.2.1 (A:1-129) Tr 40.1 8.1 0.00059 30.9 2.9 24 397-420 36-60 (129)
4 d1wpga4 f.33.1.1 (A:1-124,A:24 38.6 27 0.002 33.5 7.3 46 378-423 15-63 (472)
5 d1iwga5 d.225.1.1 (A:182-273) 8.5 87 0.0063 22.6 2.4 20 385-404 16-35 (92)
6 d1fsea_ a.4.6.2 (A:) Germinati 7.6 1.2E+02 0.0085 20.4 2.6 34 383-424 17-50 (67)
7 d2gycf1 d.99.1.1 (F:59-149) Ri 7.1 88 0.0064 23.0 1.7 18 386-403 36-53 (91)
8 d1a04a1 a.4.6.2 (A:150-216) Ni 6.8 1.3E+02 0.0098 20.1 2.6 33 384-424 20-52 (67)
9 d1a6qa1 a.159.1.1 (A:297-368) 6.2 2.1E+02 0.015 20.1 3.4 29 391-421 37-69 (72)
10 d1iq0a3 d.67.2.1 (A:1-96) Argi 6.1 1.2E+02 0.0086 22.1 2.0 16 383-398 46-61 (96)
No 1
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00 E-value=2.8e-98 Score=782.70 Aligned_cols=419 Identities=38% Similarity=0.712 Sum_probs=359.5
Q ss_pred HhhhhhcccCccccccccccchHHHHHHHHHHHHHHHHcccccCCCcccCcCCChhhHHHHHHhhcccccccccchhHHh
Q 011900 9 HLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVT 88 (475)
Q Consensus 9 ~~~~~~~~~lp~v~~p~~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~~~~~~~~~~~~a~~~~slfsLGI~PyIt 88 (475)
+.++|+.+.+|||++|+||.++|||++||++++++||+|+|||+||+|.+. .|.+.+++.+++++++|+|+|||+||||
T Consensus 1 ~~~~p~~~~~p~v~~p~~~~~lr~kil~T~~~l~iy~igs~IPlpgi~~~~-~~~~~~~~~~~a~~~~Sif~LGI~PyIt 79 (422)
T d1rh5a_ 1 KKLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQI-PAIFEFWQTITASRIGTLITLGIGPIVT 79 (422)
T ss_dssp CTTHHHHHHSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCC-CSCCTTHHHHHTCCTTBTTTTTTHHHHH
T ss_pred CCccchhhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCcCCCCCCc-ccHHHHHHHHhccccccHHHhChHHHHH
Confidence 357999999999999999999999999999999999999999999998765 4556677778899999999999999999
Q ss_pred HHHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHH
Q 011900 89 SGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICL 168 (475)
Q Consensus 89 AsIi~QLl~~~kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~~~~~~~~~~~~~~vl~L~aGs~~~~wL 168 (475)
|||+||||+..+++++||++|+||+|+|++||++|+++|++||+.++.++.+. ..+....+.++++|++|++++|||
T Consensus 80 ASIImQLL~~~~l~~~~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~---~~~~~~~~~iv~~L~aGt~~lmwL 156 (422)
T d1rh5a_ 80 AGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFG---ILTPLLAFLVIIQIAFGSIILIYL 156 (422)
T ss_dssp HHHHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC---CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999988999999999999999999999999999999999998753332 234456678899999999999999
Q ss_pred hhhhhccccccchhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHHhhcCCccHHHH
Q 011900 169 DELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNL 248 (475)
Q Consensus 169 ~e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (475)
||+||| ||+|||+||+|++||+++++|+.++|. |.+....+.+..+ ...++.+..+
T Consensus 157 ~E~It~-~GiGnGiSLiI~~gI~~~i~~~~~~~~-----------~~~~~~~~~~~~~------------~~~~~~~~~l 212 (422)
T d1rh5a_ 157 DEIVSK-YGIGSGIGLFIAAGVSQTIFVGALGPE-----------GYLWKFLNSLIQG------------VPNIEYIAPI 212 (422)
T ss_dssp HHHHHH-HSSSCHHHHHHHHHHHHHHHHHHHSTT-----------CHHHHHHHHTTTT------------CCCGGGTHHH
T ss_pred HHHHhh-cCcccchHHHHHHHHHHHHHHhccchh-----------HHHHHHHHhhhcc------------cchHHHHHHH
Confidence 999999 999999999999999999999999874 2232222211111 0123446677
Q ss_pred HHHHHHHHHhhheeccEEEEeeeeccCCCCCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhhcCCcchhhcccccc
Q 011900 249 LATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWK 328 (475)
Q Consensus 249 ~~~l~~~~~vV~l~~~~~rIPi~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~~ 328 (475)
+.+++++++++|+|++|||||++|+|++++++|+|+|+||+|+||+|||+|++++|+++++++++... +++++|.
T Consensus 213 ~~~i~i~~~vv~~~~~~~~IPv~~~~~~~~~~~~PiKln~aGviPiIfassll~~p~~i~~~l~~~~~-----~~l~~~~ 287 (422)
T d1rh5a_ 213 IGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGI-----PILGHYE 287 (422)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCSSSTTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSC-----CTTCCBC
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccceeechhhHHHHHHHHHHHHhHHHHHHhhhhccc-----ccccccC
Confidence 77888888999999999999999999999999999999999999999999999999999998865322 2445554
Q ss_pred ccccCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHcCCccccccCc
Q 011900 329 ESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS 408 (475)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk~g~~IpGiRpg 408 (475)
. ..+++++++|++||.++.+...+|.|.++|.++.+.+|++|+++|++++|+||||+||||||+|++|||+|||
T Consensus 288 ~------~~~~~~i~~~~~~~~~~~~~~~~p~~~~~Y~i~~~~l~i~Fs~f~~~~~~~~p~~iAe~lkk~g~~IpGiRpG 361 (422)
T d1rh5a_ 288 G------GRAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKS 361 (422)
T ss_dssp S------SSBSSSTTGGGCCCCSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------C
T ss_pred C------CchHHHHHHHhCCcchhhccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcCCCCCCC
Confidence 2 3567899999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred -hhH-HHHHhhchhhhhHHHHHHHHHHHhHHHHhcccccchhHHHHHHHHHHHHHHHHHh
Q 011900 409 -NLQ-KELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKER 466 (475)
Q Consensus 409 -~T~-~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~g~GTslLI~Vgv~~~~ye~~~~e~ 466 (475)
+|. +||+|+++|+|++||+|+|++|++|++++..|||||+||+|||+++++||++||+
T Consensus 362 ~~T~~~~L~~vi~rit~~Ga~~l~~ia~~p~~l~~~~gGTslLI~V~v~l~~~~qi~~e~ 421 (422)
T d1rh5a_ 362 EKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRER 421 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhh
Confidence 995 5699999999999999999999999999999999999999999999999999997
No 2
>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]}
Probab=61.71 E-value=2.2 Score=33.96 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=24.7
Q ss_pred CChHHHHHHHH------HcCCccccccCc-hhHHHHHhhchh
Q 011900 386 SSARDVAKQLK------EQQMVMPGHRDS-NLQKELNRYIPT 420 (475)
Q Consensus 386 ~~p~~iAe~Lk------k~g~~IpGiRpg-~T~~yL~k~i~~ 420 (475)
++++|+.+.+. +....|||+||| .-.+.+++....
T Consensus 19 v~~~~v~~~~~~~~~~~~k~~~ipGFRkGKvP~~vi~k~yg~ 60 (117)
T d1p9ya_ 19 IAADSIETAVKSELVNVAKKVRIDGLRKGKVPMNIVAQRYGA 60 (117)
T ss_dssp ECHHHHHHHHHHHHHHHHTTCCCTTSCTTCSCHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHhcCCCCCcCCCCccHHHHHHHHhH
Confidence 45666665553 467799999999 777777776543
No 3
>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain {Vibrio cholerae [TaxId: 666]}
Probab=40.07 E-value=8.1 Score=30.86 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=17.5
Q ss_pred HcCCccccccCc-hhHHHHHhhchh
Q 011900 397 EQQMVMPGHRDS-NLQKELNRYIPT 420 (475)
Q Consensus 397 k~g~~IpGiRpg-~T~~yL~k~i~~ 420 (475)
.....|||+||| .-..-+++....
T Consensus 36 ~k~~~ipGFRkGKvP~~ii~k~~~~ 60 (129)
T d1t11a2 36 AKNRRFDGFRKGKVPMKMVAKMYGK 60 (129)
T ss_dssp HTTCCCTTSCSSCCCHHHHHHHHHH
T ss_pred HHhCCCCCCCCCCCcHHHHHHHhhh
Confidence 347899999999 666666666543
No 4
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=38.64 E-value=27 Score=33.54 Aligned_cols=46 Identities=9% Similarity=0.135 Sum_probs=31.3
Q ss_pred HHhHhh-cCCChHHHHHHHHHcCCc-cccccCc-hhHHHHHhhchhhhh
Q 011900 378 KTWIEV-SGSSARDVAKQLKEQQMV-MPGHRDS-NLQKELNRYIPTAAA 423 (475)
Q Consensus 378 ~~~~~~-~g~~p~~iAe~Lkk~g~~-IpGiRpg-~T~~yL~k~i~~~t~ 423 (475)
.+-++. .|++++|++|++++.|.- +|.-++- --+.+++..-..+..
T Consensus 15 ~l~td~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~~~~~ 63 (472)
T d1wpga4 15 YFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVR 63 (472)
T ss_dssp HHTCCTTTCBCHHHHHHHHHHSCCSSCCCCCCCCHHHHHHHHTCSHHHH
T ss_pred HhCcCcccCcCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhCHHHH
Confidence 445554 589999999999999954 4444444 566677766555543
No 5
>d1iwga5 d.225.1.1 (A:182-273) Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains {Escherichia coli [TaxId: 562]}
Probab=8.51 E-value=87 Score=22.63 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=17.9
Q ss_pred CCChHHHHHHHHHcCCcccc
Q 011900 385 GSSARDVAKQLKEQQMVMPG 404 (475)
Q Consensus 385 g~~p~~iAe~Lkk~g~~IpG 404 (475)
|+++.|+++-+++++..+|+
T Consensus 16 glt~~dV~~ai~~~N~~~~~ 35 (92)
T d1iwga5 16 QLTPVDVITAIKAQNAQVAA 35 (92)
T ss_dssp TCCHHHHHHHHHHHSCCCCC
T ss_pred CCCHHHHHHHHHhhcccccC
Confidence 58999999999999988875
No 6
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=7.56 E-value=1.2e+02 Score=20.43 Aligned_cols=34 Identities=9% Similarity=0.247 Sum_probs=24.3
Q ss_pred hcCCChHHHHHHHHHcCCccccccCchhHHHHHhhchhhhhH
Q 011900 383 VSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAF 424 (475)
Q Consensus 383 ~~g~~p~~iAe~Lkk~g~~IpGiRpg~T~~yL~k~i~~~t~~ 424 (475)
..|.+.+|||+.|. +.+...+.|+.++..++.+-
T Consensus 17 ~~G~s~~eIA~~L~--------is~~TV~~~~~~i~~Kl~v~ 50 (67)
T d1fsea_ 17 VQDKTTKEIASELF--------ISEKTVRNHISNAMQKLGVK 50 (67)
T ss_dssp TTTCCHHHHHHHHT--------SCHHHHHHHHHHHHHHHTCS
T ss_pred HccCCHHHHHHHHC--------CCHHHHHHHHHHHHHHcCCC
Confidence 35789999999884 44455677777777765543
No 7
>d2gycf1 d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain {Escherichia coli [TaxId: 562]}
Probab=7.05 E-value=88 Score=22.97 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=15.5
Q ss_pred CChHHHHHHHHHcCCccc
Q 011900 386 SSARDVAKQLKEQQMVMP 403 (475)
Q Consensus 386 ~~p~~iAe~Lkk~g~~Ip 403 (475)
++++|+++.|+++|..|.
T Consensus 36 Vt~~dI~~~l~~~g~~Id 53 (91)
T d2gycf1 36 IGTRDIADAVTAAGVEVA 53 (91)
T ss_dssp CCHHHHHHHHTTTTCCCC
T ss_pred cCHHHHHHHHHHcCCccc
Confidence 799999999999987663
No 8
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=6.75 E-value=1.3e+02 Score=20.13 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=23.9
Q ss_pred cCCChHHHHHHHHHcCCccccccCchhHHHHHhhchhhhhH
Q 011900 384 SGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAF 424 (475)
Q Consensus 384 ~g~~p~~iAe~Lkk~g~~IpGiRpg~T~~yL~k~i~~~t~~ 424 (475)
.|.+.+|||++|. +.|...+.|+.++..++.+-
T Consensus 20 ~G~s~~eIA~~l~--------iS~~TV~~~~~~i~~Klgv~ 52 (67)
T d1a04a1 20 QGLPNKMIARRLD--------ITESTVKVHVKHMLKKMKLK 52 (67)
T ss_dssp TTCCHHHHHHHHT--------CCHHHHHHHHHHHHHHHTCC
T ss_pred hCCCHHHHHHHHC--------CCHHHHHHHHHHHHHHhCCC
Confidence 5799999999884 55555677777777666543
No 9
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.22 E-value=2.1e+02 Score=20.07 Aligned_cols=29 Identities=10% Similarity=0.166 Sum_probs=19.6
Q ss_pred HHHHHHHcCCccccccCc----hhHHHHHhhchhh
Q 011900 391 VAKQLKEQQMVMPGHRDS----NLQKELNRYIPTA 421 (475)
Q Consensus 391 iAe~Lkk~g~~IpGiRpg----~T~~yL~k~i~~~ 421 (475)
+-+.|+.. -|||.-|| .-+.+++++..++
T Consensus 37 Vm~~L~~e--~Ip~LPPGGGL~sK~~~IE~vy~~l 69 (72)
T d1a6qa1 37 VMRTLASE--NIPSLPPGGELASKRNVIEAVYNRL 69 (72)
T ss_dssp HHHHHHHT--TCSSCCTTTGGGGGHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCCCCCccHHHHHHHHHHHHHHh
Confidence 44566554 39999996 4556777776664
No 10
>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]}
Probab=6.07 E-value=1.2e+02 Score=22.07 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=13.0
Q ss_pred hcCCChHHHHHHHHHc
Q 011900 383 VSGSSARDVAKQLKEQ 398 (475)
Q Consensus 383 ~~g~~p~~iAe~Lkk~ 398 (475)
..+.||+|+||++.+.
T Consensus 46 ~~~k~P~~iA~~I~~~ 61 (96)
T d1iq0a3 46 ELRKPPQAIAQELKDR 61 (96)
T ss_dssp HTTSCHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHH
Confidence 3458999999999864
Done!