RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 011900
(475 letters)
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane
protein complex, preprotein TRAN membrane insertion,;
2.90A {Pyrococcus furiosus}
Length = 482
Score = 501 bits (1291), Expect = e-176
Identities = 156/468 (33%), Positives = 264/468 (56%), Gaps = 16/468 (3%)
Query: 6 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFY 65
++ + PEV+ R++P RE+ ++T ++L ++ V +++P+YGI D F
Sbjct: 2 GARDIIYALERWFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGI-PERIQDYFQ 60
Query: 66 WMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIL 125
++RV+LA G+++ LGI PIVT+G+++QLL GS+II++D EDR Q++ +
Sbjct: 61 FLRVVLAGRNGSILTLGIGPIVTAGIILQLLVGSEIIKLDLANPEDRRFYQALQRVFSVF 120
Query: 126 IAIGEAVAYVMSGMYGSVSQ-LGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISL 184
+ EA +++ G +G V + A+L+ILQL GI++I LDEL+ K +G+GSGISL
Sbjct: 121 MCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVSK-WGIGSGISL 179
Query: 185 FIATNICESIIWKAFSPTT-INSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLP 243
FIA + ++I+ ++ +P T N + A++ I K + + P
Sbjct: 180 FIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLWGAIYRGGSAP 239
Query: 244 NITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSN 303
++ +++AT++VF IVVYF+ +V +P+ + +G+YPI+ Y SN+PIIL AL +N
Sbjct: 240 DMLSVVATIVVFFIVVYFESMRVEIPLGYR-GVTVRGSYPIRFLYVSNIPIILTFALYAN 298
Query: 304 LYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHAL 363
+ ++ L W P+ G YV P ++ + NP A+
Sbjct: 299 IQLWAR---------VLDRLGHPWLGRFDPTTGSPISGFVLYVIPPRNIFSVIDNPVRAI 349
Query: 364 FYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN--LQKELNRYIPTA 421
YL+ + LF W+E++G AR +A+QL+ + +PG R L+K L RYIP
Sbjct: 350 VYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDPRTLEKVLQRYIPYV 409
Query: 422 AAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 469
+G + + + VLADF+GA+G+GTGILL V I+Y+++E +E+ +E
Sbjct: 410 TFWGSLTVALIAVLADFLGALGTGTGILLTVGILYRFYEEIAREQITE 457
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY,
membrane protein, protein channels, protein transport;
3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1
PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Length = 436
Score = 491 bits (1266), Expect = e-172
Identities = 160/464 (34%), Positives = 256/464 (55%), Gaps = 41/464 (8%)
Query: 8 LHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWM 67
+ + P L +PEV+ ++I F+EK+ +T I L ++ + + +Y + F +
Sbjct: 1 MKKLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-AIFEFW 59
Query: 68 RVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIA 127
+ I AS GT++ LGI PIVT+G++MQLL GS II++D ++ E+RAL G QKLL I++
Sbjct: 60 QTITASRIGTLITLGIGPIVTAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMC 119
Query: 128 IGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIA 187
EAV +V +G +G L A L+I+Q+ F II+I LDE++ K YG+GSGI LFIA
Sbjct: 120 FVEAVLFVGAGAFG---ILTPLLAFLVIIQIAFGSIILIYLDEIVSK-YGIGSGIGLFIA 175
Query: 188 TNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITN 247
+ ++I A P EG + + LI N+ I
Sbjct: 176 AGVSQTIFVGALGP-----------EGYLWKFLNSLIQG------------VPNIEYIAP 212
Query: 248 LLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFI 307
++ T++VFL+VVY + +V +P+ +G G YPIK Y SN+P+IL +AL +N+
Sbjct: 213 IIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLW 272
Query: 308 SQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLV 367
LY + +LG ++ V G+AYY++ P L+ + ++P HA+ Y++
Sbjct: 273 GLALY-----RMGIPILGHYEGGR------AVDGIAYYLSTPYGLSSVISDPIHAIVYMI 321
Query: 368 FMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS--NLQKELNRYIPTAAAFG 425
M+ C +F W+E +G + +AK++ M + G R S ++ L RYIP
Sbjct: 322 AMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMS 381
Query: 426 GVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 469
+G L +A+F+GA+G GTG+LL V+I+Y+ +E +ER SE
Sbjct: 382 SAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRERTSE 425
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome,
protein EXIT tunnel, cotranslational protein
translocation, protein conducting channel; 6.48A {Canis
lupus familiaris}
Length = 476
Score = 492 bits (1267), Expect = e-172
Identities = 321/474 (67%), Positives = 394/474 (83%), Gaps = 4/474 (0%)
Query: 4 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63
+ L +++PF LPE+Q +RKI F+EKV++T I+LFIFLVC Q+PL+GI S+ ADP
Sbjct: 2 AIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADP 61
Query: 64 FYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLG 123
FYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV + +DRAL NGAQKL G
Sbjct: 62 FYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDT-PKDRALFNGAQKLFG 120
Query: 124 ILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGIS 183
++I IG+++ YVM+GMYG S++GAG +LI +QL AG+IV+ LDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 184 LFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLP 243
LFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 244 NITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSN 303
N+ NL+AT+ VF +V+YFQGF+V LP++S RGQ YPIKLFYTSN+PIILQSALVSN
Sbjct: 241 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 300
Query: 304 LYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFH 361
LY ISQ+L ++SGN V+LLG W ++ G + PVGGL +Y++ P S + +P H
Sbjct: 301 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVH 360
Query: 362 ALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTA 421
A+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++ ELNRYIPTA
Sbjct: 361 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA 420
Query: 422 AAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 475
AAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE++ E+G G
Sbjct: 421 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQS-EVGSMGA 473
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane,
phospho signal sequence, membrane, ribosome, transport;
8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Length = 490
Score = 430 bits (1107), Expect = e-148
Identities = 144/473 (30%), Positives = 242/473 (51%), Gaps = 14/473 (2%)
Query: 3 GGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIH---STT 59
GFR++ +V+P LP LPEV+ K+PF +K++YT+ + I+L Q PL G+ +
Sbjct: 2 SGFRLIDIVKPILPILPEVELPFEKLPFDDKIVYTIFAGLIYLFA-QFPLVGLPKATTPN 60
Query: 60 GADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQ 119
DP Y++R + T++E G+ P ++SGL++QLLAG K+I+V+ ++ DR L
Sbjct: 61 VNDPIYFLRGVFGCEPRTLLEFGLFPNISSGLILQLLAGLKVIKVNFKIQSDRELFQSLT 120
Query: 120 KLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLG 179
K+ I+ + ++ +G +G L LI QL AGI L E++ KG+G
Sbjct: 121 KVFAIVQYVILTNIFIFAGYFGD--DLSVVQIGLINFQLVGAGIFTTLLAEVIDKGFGFS 178
Query: 180 SGISLFIATNICESIIWKAFSPTTINSGRG--AEFEGAVIALFHLLITKQNK-VGALREA 236
SG + I +++ F + I G E +GA+I L L +K +G + A
Sbjct: 179 SGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKTFIGGIISA 238
Query: 237 FYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIIL 296
F R LPN+T + + + +IV Y Q +V LP+RS ARG YPIKL YT + ++
Sbjct: 239 FNRDYLPNLTTTIIVLAIAIIVCYLQSVRVELPIRSTRARGTNNVYPIKLLYTGCLSVLF 298
Query: 297 QSALVSNL----YFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASL 352
++ + + + QL+ + + ++G ++ + + ++P L+ +
Sbjct: 299 SYTILFYIHIFAFVLIQLVAKNEPTHIICKIMGHYENAN-NLLAVPTFPLSLLAPPTSFF 357
Query: 353 ADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQK 412
+ P + Y F+L F+ W +SGSSARDVA + K+Q + + G R+ N+ K
Sbjct: 358 KGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGITLMGRREQNVAK 417
Query: 413 ELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 465
ELN+ IP AA G + +TV+ + +G G GI++ + + E E
Sbjct: 418 ELNKVIPIAAVTGASVLSLITVIGESLGLKGKAAGIVVGIAGGFSLLEVITIE 470
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 2e-07
Identities = 94/591 (15%), Positives = 164/591 (27%), Gaps = 229/591 (38%)
Query: 7 VLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLF--IFLVCSQLPLYG--IHSTTGAD 62
LV FL ++ + + F + V+ ++ F +L G IH+
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQ-VLNLCLTEFENCYL-------EGNDIHALAAK- 107
Query: 63 PFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLL 122
+L N T+++ ++ + + +++A + + + AL +
Sbjct: 108 -------LLQENDTTLVK--TKELIKNYITARIMAKRPFDK-----KSNSALFRAVGE-- 151
Query: 123 GILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDEL--LQKGYGLGS 180
G A + G G GN +EL L + Y
Sbjct: 152 ------GNAQLVAIFG--------GQGN-------------TDDYFEELRDLYQTYH--V 182
Query: 181 GISLFI--ATNICESIIWKAFSPTTINS--GRGAEFEG---------------------- 214
+ I + + + +G
Sbjct: 183 LVGDLIKFSAETLSEL---IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 215 --AVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLV------------------ 254
VI L H ++T K+ R L T ++
Sbjct: 240 LIGVIQLAHYVVTA--KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 255 -FLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSAL------------V 301
+ V++F G R + AYP TS P IL+ +L +
Sbjct: 298 KAITVLFFIG-----------VRCYE-AYPN----TSLPPSILEDSLENNEGVPSPMLSI 341
Query: 302 SNLY------FISQL-------------LY--RKYSGNFFVNLLGKWKESEYSGHSIPVG 340
SNL ++++ L K N V SG +
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK---NLVV-----------SGPPQSLY 387
Query: 341 GLAYY---VTAPASLADMAANPF---HALFYLVFMLTACALF-SKTWIEVSGSSARDVAK 393
GL AP+ L D + PF F F L + F S + S +D+ K
Sbjct: 388 GLNLTLRKAKAPSGL-DQSRIPFSERKLKFSNRF-LPVASPFHSHLLVPASDLINKDLVK 445
Query: 394 Q---LKEQQMVMP------GH--R--DSNLQKELNRYI-------PTAAAF--------- 424
+ + +P G R ++ + + I T F
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Query: 425 -GGVC-IGALT-VLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGF 472
GG +G LT D G+G +++A T + + GF
Sbjct: 506 PGGASGLGVLTHRNKD-----GTGVRVIVA--------GTLDINPDDDYGF 543
Score = 47.0 bits (111), Expect = 1e-05
Identities = 60/340 (17%), Positives = 102/340 (30%), Gaps = 109/340 (32%)
Query: 201 PTTINSGRGAEFEGAVIALFHLLITKQNKVGA--LREAFYRQNLPNITNLLA-----TVL 253
P T++ G E LL+ + A L+E F + LP T A T
Sbjct: 8 PLTLSHG---SLE------HVLLVPTASFFIASQLQEQFN-KILPEPTEGFAADDEPTTP 57
Query: 254 VFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYR 313
L V F G+ V S + G + +L L F + L
Sbjct: 58 AEL-VGKFLGY-----VSSLVEPSKVGQFDQ----------VLNLCLT---EFENCYL-- 96
Query: 314 KYSGN----FFVNLLGKWKESEYSGHSIPVGGLAYYVTA------------PASLADMAA 357
GN LL + + + + Y+TA ++L A
Sbjct: 97 --EGNDIHALAAKLLQENDTTLVKTKEL----IKNYITARIMAKRPFDKKSNSALFR-AV 149
Query: 358 NPFHALFYLVF----MLTAC-----ALFS------KTWIEVSGSSARDVAKQLKEQQMVM 402
+A +F L+ I+ S + ++ + + + V
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 403 PGHRDSNLQKELNR--------YIPTAAAFGGVCIGALTVLADFM--------------- 439
+ N+ + L Y+ + IG + LA ++
Sbjct: 210 T--QGLNILEWLENPSNTPDKDYL-LSIPISCPLIG-VIQLAHYVVTAKLLGFTPGELRS 265
Query: 440 ---GAIGSGTGILLAVTI-IYQYFETFEK--ERASELGFF 473
GA G G++ AV I +E+F +A + FF
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Score = 41.2 bits (96), Expect = 0.001
Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 41/158 (25%)
Query: 276 RGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGH 335
R ++G L T Q AL + + + + ++ ++GH
Sbjct: 1720 RSEKG----LLSATQF----TQPALTL----MEKAAFEDLKSKGLIP-----ADATFAGH 1762
Query: 336 SIPVGGLAYYVTAPASLADMAANPFHALFYLVF---MLTACALFSKTWIEVSGSSARDVA 392
S +G Y A ASLAD +L +VF M A+ E+ S+ +A
Sbjct: 1763 S--LG--EY--AALASLAD--VMSIESLVEVVFYRGMTMQVAVPRD---ELGRSNYGMIA 1811
Query: 393 KQLKEQQMVMPGHRDSNLQKELNRYI--PTAAAFGGVC 428
+ PG ++ +E +Y+ G +
Sbjct: 1812 --------INPGRVAASFSQEALQYVVERVGKRTGWLV 1841
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein,
nucleotide-binding, PR biosynthesis, translation,
zinc-finger, 70S ribosome, ribos translocon; 7.10A
{Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Length = 435
Score = 43.7 bits (104), Expect = 1e-04
Identities = 65/363 (17%), Positives = 126/363 (34%), Gaps = 83/363 (22%)
Query: 20 EVQSADRKIP-FREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVIL------- 71
+ QSA + + ++++ + +L +F + S +P+ GI + A R +
Sbjct: 1 DFQSAKGGLGELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAKLLEQQRGTIIEMFNMF 60
Query: 72 ---ASNRGTVMELGITPIVTSGLVMQLLAGS--KIIEVDNNVREDRALLNGAQKLLGILI 126
A +R ++ LGI P +++ +++QLL + E+ R ++ + +++
Sbjct: 61 SGGALSRASIFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVL 120
Query: 127 AIGEAVAYV-----MSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 181
AI +++ M GM G V G ++ L + ++ L E + + G+G+G
Sbjct: 121 AIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLGEQITE-RGIGNG 179
Query: 182 ISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQN 241
IS+ I I A A+ RQ
Sbjct: 180 ISIIIFAGIV------------------AGLPPAIAHTIEQA---------------RQG 206
Query: 242 LPNITNLLATVLVFLIVVYFQGFKVVLPVRS---------------KNARGQQGAYPIKL 286
+ LL ++ V +F VV R + Q P+K+
Sbjct: 207 DLHFLVLLLVAVLVFAVTFF----VVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKV 262
Query: 287 FYTSNMPIILQSALVSNLYF---ISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLA 343
+P I S++ + F I+ N+ + S Y P+ L
Sbjct: 263 NMAGVIPAIFASSI---ILFPATIASWFGGGTGWNWLTTI------SLYLQPGQPLYVLL 313
Query: 344 YYV 346
Y
Sbjct: 314 YAS 316
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 2e-04
Identities = 80/529 (15%), Positives = 143/529 (27%), Gaps = 166/529 (31%)
Query: 7 VLHLVRPFLPFLPEVQSADRKIPFREKVIY--TVISLFIFLVCSQLPLYGIHSTTGADPF 64
V ++R FL +++ P +Y L+ + ++ ++ + P+
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-----NDNQVFAKYNVSRLQPY 137
Query: 65 YWMRVILASNRGTVMELGITPIVT------SG---LVMQLLAGSKIIEV-DNNV------ 108
+R L +EL V SG + + + K+ D +
Sbjct: 138 LKLRQAL-------LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 109 --REDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVI 166
+L QKLL Y + + S S + N L I +
Sbjct: 191 NCNSPETVLEMLQKLL-----------YQIDPNWTSRSD-HSSNIKLRIHSIQAE----- 233
Query: 167 CLDELL-QKGYGLGSGISLFIATNICESIIWKAFSP------TTINSGRGAEFEGAVIAL 219
L LL K Y L + N+ + W AF+ TT +F A
Sbjct: 234 -LRRLLKSKPYE----NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV-TDFLSAATT- 286
Query: 220 FHLLITKQNKVGALREA---FYR------QNLPNITNLLATVLVFLIVVYFQGFKVVLPV 270
H+ + + E + Q+LP + +I +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG----LA 342
Query: 271 RSKNARGQQGAYP----IKLFYTSNMPIILQSALVSNLY-----F-----I-SQLL---- 311
N + I+ L+ A ++ F I + LL
Sbjct: 343 TWDNWK-HVNCDKLTTIIESSLNV-----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 312 --------------YRKYSGNFFVNLLGKW-KESEYSGHSI------PVGGLA------- 343
KYS L+ K KES S SI +
Sbjct: 397 FDVIKSDVMVVVNKLHKYS------LVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 344 --YYVTAPASLADMAANP----FHALFYLVFMLTAC------ALFSKT-----WIEV--- 383
Y + D+ F+ ++ L LF ++E
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFY--SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 384 -------SGSSARDVAKQLK--EQQMVMPGHRDSNLQKELNRYIPTAAA 423
+ S + +QLK + + + L + ++P
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
>3din_C Preprotein translocase subunit SECY; protein translocation,
membrane protein, ATPase, ATP-binding membrane,
nucleotide-binding, protein transport; HET: ADP; 4.50A
{Thermotoga maritima MSB8}
Length = 431
Score = 40.6 bits (96), Expect = 8e-04
Identities = 54/324 (16%), Positives = 111/324 (34%), Gaps = 64/324 (19%)
Query: 27 KIP-FREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASN----------- 74
KIP R+++I+T ++L +F + +P+ G++ + F +
Sbjct: 10 KIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIFRRIAETAGVAGILSFYDVFTG 69
Query: 75 ----RGTVMELGITPIVTSGLVMQLLAGS--KIIEVDNNVREDRALLNGAQKLLGILIAI 128
R +V + +TP +T+ +++QLLA + E+ E R + L +LI
Sbjct: 70 GALSRFSVFTMSVTPYITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTRRLTLLIGG 129
Query: 129 GEAVAYV-----MSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGIS 183
+A + + +L + + + ++ L E + + G+G+GIS
Sbjct: 130 FQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTMSMLAGTMFLLWLGERITE-KGIGNGIS 188
Query: 184 LFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLP 243
+ I I P+ I
Sbjct: 189 ILIFAGIVARY------PSYIRQAYLGGLNLLEWIFL----------------------- 219
Query: 244 NITNLLATVLVFLIVVYFQGFKVVLPVR-------SKNARGQQGAYPIKLFYTSNMPIIL 296
+ ++ ++ Q + + ++ + G PIK+ +PII
Sbjct: 220 ----IAVALITIFGIILVQQAERRITIQYARRVTGRRVYGGASTYLPIKVNQGGVIPIIF 275
Query: 297 QSALVSNLYFISQLLYRKYSGNFF 320
SA+VS I+ + + N F
Sbjct: 276 ASAIVSIPSAIASITNNETLKNLF 299
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane
protein translocation protein- protein complex,
ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Length = 429
Score = 37.5 bits (88), Expect = 0.007
Identities = 55/311 (17%), Positives = 110/311 (35%), Gaps = 76/311 (24%)
Query: 27 KIP-FREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVIL----------ASNR 75
++ R+K I+T++ I+ + S +P+ GI+ D + R
Sbjct: 10 ELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGR 69
Query: 76 GTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVRED----RALLNGAQKLLGILIAIGEA 131
TV LG+ P +++ ++MQLL + I + +E+ R +N K L + +A ++
Sbjct: 70 LTVFALGVMPYISASIMMQLLTVA-IPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQS 128
Query: 132 VAYVM-------SGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISL 184
+ V G ++ +L L + ++ + + + + G+G+G SL
Sbjct: 129 LGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITE-KGIGNGASL 187
Query: 185 FIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPN 244
I I A F AVI + + +
Sbjct: 188 IIFAGIV------------------ANFPNAVIQFYEKV---------------KTGDIG 214
Query: 245 ITNLLATVLVFLIVVYFQGFKVVLPVRS---------------KNARGQQGAYPIKLFYT 289
LL + + + ++ +V + + G++ PIK+
Sbjct: 215 PLTLLLIIALIIAIIVG----IVYVQEAERRIPIQYPGRQVGRQLYAGRKTYLPIKINPA 270
Query: 290 SNMPIILQSAL 300
+PII AL
Sbjct: 271 GVIPIIFAQAL 281
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC,
protein-conducting-channel, membrane, prote transport,
translocation, transmembrane, transport; 3.20A {Thermus
thermophilus} PDB: 2zqp_Y
Length = 434
Score = 37.5 bits (88), Expect = 0.009
Identities = 47/309 (15%), Positives = 105/309 (33%), Gaps = 73/309 (23%)
Query: 27 KIP-FREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVIL----------ASNR 75
+IP R++V++T++ L + + + +P G+ + + + R
Sbjct: 10 QIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFER 69
Query: 76 GTVMELGITPIVTSGLVMQLLAGS--KIIEVDNNVREDRALLNGAQKLLGILIAIGEAVA 133
++ LGI P +T+ ++MQ+L + ++ E R ++N ++ GI + +
Sbjct: 70 FSIFALGIMPYITAAIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFF 129
Query: 134 YVM-------SGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFI 186
G ++++ +++ + E + + YG+G+G SL I
Sbjct: 130 LATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGIALLLWMAERITE-YGIGNGTSLII 188
Query: 187 ATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNIT 246
I E+ ++ L+ R N+
Sbjct: 189 FAGIV------------------VEWLPQILRTIGLI---------------RTGEVNLV 215
Query: 247 NLLATVLVFLIVVYFQGFKVVLPVRS---------------KNARGQQGAYPIKLFYTSN 291
L + ++ + ++ + GQ PIKL
Sbjct: 216 AFLFFLAFIVLAFAG----MAAVQQAERRIPVQYARKVVGGRVYGGQATYIPIKLNAAGV 271
Query: 292 MPIILQSAL 300
+PII +A+
Sbjct: 272 IPIIFAAAI 280
>3ea6_A Staphylococcal enterotoxin K; superantigen; 0.92A {Staphylococcus
aureus} PDB: 2ntt_A 2nts_A 2g9h_D*
Length = 219
Score = 35.5 bits (81), Expect = 0.020
Identities = 15/72 (20%), Positives = 29/72 (40%)
Query: 276 RGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGH 335
+G G ++ FYT + L+ ++ +QL + S + K S + G
Sbjct: 1 QGDIGIDNLRNFYTKKDFVDLKDVKDNDTPIANQLQFSNESYDLISESKDFNKFSNFKGK 60
Query: 336 SIPVGGLAYYVT 347
+ V G++Y
Sbjct: 61 KLDVFGISYNGQ 72
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.095
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 13/40 (32%)
Query: 397 EQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLA 436
E+Q + LQ L Y +A AL + A
Sbjct: 18 EKQAL------KKLQASLKLYADDSAP-------ALAIKA 44
>1dyq_A SEA, staphylococcal enterotoxin A mutant; staphylococcal
enterotoxin type A, vaccine; 1.5A {Staphylococcus
aureus} SCOP: b.40.2.2 d.15.6.1 PDB: 1esf_A 1sxt_A
1lo5_D 1i4g_A 1i4h_A
Length = 234
Score = 29.7 bits (66), Expect = 1.6
Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 6/84 (7%)
Query: 270 VRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYR------KYSGNFFVNL 323
+R K+ +K Y N ++ + + +L++ + + V
Sbjct: 13 LRKKSELQGTALGNLKQIYYYNEKAKTENKESHDQFRQHTILFKGFFTDHSWYNDLLVRF 72
Query: 324 LGKWKESEYSGHSIPVGGLAYYVT 347
K +Y G + + G
Sbjct: 73 DSKDIVDKYKGKKVDLYGAYAGYQ 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.416
Gapped
Lambda K H
0.267 0.0817 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,268,630
Number of extensions: 448024
Number of successful extensions: 1020
Number of sequences better than 10.0: 1
Number of HSP's gapped: 981
Number of HSP's successfully gapped: 21
Length of query: 475
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 378
Effective length of database: 3,993,456
Effective search space: 1509526368
Effective search space used: 1509526368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.3 bits)