RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 011900
(475 letters)
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 422
Score = 350 bits (898), Expect = e-117
Identities = 157/459 (34%), Positives = 255/459 (55%), Gaps = 41/459 (8%)
Query: 11 VRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVI 70
+ P L +PEV+ ++I F+EK+ +T I L ++ + + +Y + F + + I
Sbjct: 3 LIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-AIFEFWQTI 61
Query: 71 LASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGE 130
AS GT++ LGI PIVT+G++MQLL GS II++D ++ E+RAL G QKLL I++ E
Sbjct: 62 TASRIGTLITLGIGPIVTAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVE 121
Query: 131 AVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNI 190
AV +V +G +G ++ L A L+I+Q+ F II+I LDE++ K YG+GSGI LFIA +
Sbjct: 122 AVLFVGAGAFGILTPL---LAFLVIIQIAFGSIILIYLDEIVSK-YGIGSGIGLFIAAGV 177
Query: 191 CESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLA 250
++I A P EG + + LI N+ I ++
Sbjct: 178 SQTIFVGALGP-----------EGYLWKFLNSLIQGVP------------NIEYIAPIIG 214
Query: 251 TVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQL 310
T++VFL+VVY + +V +P+ +G G YPIK Y SN+P+IL +AL +N+
Sbjct: 215 TIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLA 274
Query: 311 LYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFML 370
LY + +LG ++ V G+AYY++ P L+ + ++P HA+ Y++ M+
Sbjct: 275 LY-----RMGIPILGHYEGGR------AVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMI 323
Query: 371 TACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR--DSNLQKELNRYIPTAAAFGGVC 428
C +F W+E +G + +AK++ M + G R + ++ L RYIP
Sbjct: 324 ITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAF 383
Query: 429 IGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERA 467
+G L +A+F+GA+G GTG+LL V+I+Y+ +E +ER
Sbjct: 384 VGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRERT 422
>d2g9hd1 b.40.2.2 (D:4-86) Enterotoxin type I, SEI {Staphylococcus
aureus [TaxId: 1280]}
Length = 83
Score = 30.5 bits (69), Expect = 0.084
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 287 FYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYY 345
FYT + I L+ + NL +QL + + + S++ G + + G+ Y
Sbjct: 9 FYTKHDYIDLKGLIDKNLPSANQLEFSTGINDLISESNNWDEISKFKGKKLDIFGIDYN 67
>d1esfa1 b.40.2.2 (A:1-120) Staphylococcal enterotoxin A, SEA
{Staphylococcus aureus [TaxId: 1280]}
Length = 120
Score = 30.6 bits (69), Expect = 0.15
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 284 IKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGN------FFVNLLGKWKESEYSGHSI 337
+K Y N ++ + + +L++ + + V+ K +Y G +
Sbjct: 26 LKQIYYYNEKAKTENKESHDQFLQHTILFKGFFTDHSWYNDLLVDFDSKDIVDKYKGKKV 85
Query: 338 PVGGLAYYVT 347
+ G Y
Sbjct: 86 DLYGAYYGYQ 95
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia
coli [TaxId: 562]}
Length = 146
Score = 30.2 bits (68), Expect = 0.29
Identities = 19/130 (14%), Positives = 45/130 (34%), Gaps = 16/130 (12%)
Query: 93 MQLLAGSKIIEVDNNVREDRALLNGAQKLLGILI-AIGEAVAYVMSGMYGSVSQLGAGNA 151
+ + K + + ++ + + + + ++ + A Y + +S
Sbjct: 17 LNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEF--VEISARQTDEH 74
Query: 152 ILIILQLCFAGIIVICLDELLQKGYGL-----GSGISLFIATNICESI---IWKAFSPTT 203
+ I+++ GI + + + +G + G G+ L +A I E I S
Sbjct: 75 LYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGESM-- 132
Query: 204 INSGRGAEFE 213
GA E
Sbjct: 133 ---LGGARME 139
>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 430
Score = 28.8 bits (63), Expect = 1.5
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 55 IHSTTGADPFYWMR 68
H DP+ W+
Sbjct: 19 YHGHKVCDPYAWLE 32
>d1gwya_ b.97.1.1 (A:) Sticholysin II {Carribean sea anemone
(Stoichactis helianthus) [TaxId: 6123]}
Length = 175
Score = 26.8 bits (59), Expect = 4.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 339 VGGLAYYVTAPASLADMAANPFHALFY 365
V AYY+++ +L M + PF +Y
Sbjct: 85 VAAFAYYMSSGNTLGVMFSVPFDYNWY 111
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein,
GcvT {Escherichia coli [TaxId: 562]}
Length = 90
Score = 24.8 bits (54), Expect = 9.1
Identities = 4/44 (9%), Positives = 12/44 (27%)
Query: 110 EDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAIL 153
++ +L + + + SG + A +
Sbjct: 10 TEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARV 53
>d1iaza_ b.97.1.1 (A:) Equinatoxin II (eqtII, tenebrosin C)
{European sea anemone (Actinia equina) [TaxId: 6106]}
Length = 175
Score = 25.6 bits (56), Expect = 9.6
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 323 LLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFY 365
LL ++ + VG LAY ++ +LA + + P+ +Y
Sbjct: 67 LLYNGQKDRGPVATGAVGVLAYLMSDGNTLAVLFSVPYDYNWY 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.141 0.416
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,720,472
Number of extensions: 78186
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 10
Length of query: 475
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 386
Effective length of database: 1,185,626
Effective search space: 457651636
Effective search space used: 457651636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.1 bits)