BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011901
(475 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana
GN=RH53 PE=2 SV=1
Length = 616
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/484 (70%), Positives = 388/484 (80%), Gaps = 18/484 (3%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDI-------IKSR 54
M + +L+RS SKR L+A+LTS+ T+L +LA P R D+ +K+
Sbjct: 1 MITTVLRRSL-LDASKRNLSASLTSINTVLFHNLA-----PAATRVSDLALIGSSDVKAG 54
Query: 55 FSAGT--REFHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEGLDISKLDISQD 109
F G + H S PLDF++S+ Q + + V +S +GL IS+L IS +
Sbjct: 55 FPFGVEAKGIHFQSGPLDFRASMVSQAGFAISESSERRVGDSESVGGDGLAISELGISPE 114
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
IV AL+ +GI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKIIK+N KHG
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
RGRNPLCLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR LDYGVD VGTP
Sbjct: 175 RGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTP 234
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVIDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+ILE+LP+ RQSMMFSATMP W
Sbjct: 235 GRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSW 294
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIV 349
IRSLT KYL NPLTVDLVGDSDQKLADGI+ YSI Y + SIIG L+TEHAKGGKCIV
Sbjct: 295 IRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIV 354
Query: 350 FTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
FTQTKRDADRL++A+A+S+ CE LHGDISQSQRERTL+ FRDG FNIL+ATDVAARGLDV
Sbjct: 355 FTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDV 414
Query: 410 PNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQV 469
PNVDLIIHYELPN +ETFVHRTGRTGRAGKKGSAILIY+ Q+R VK IER+VG RFT++
Sbjct: 415 PNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTEL 474
Query: 470 TSFS 473
S +
Sbjct: 475 PSIA 478
>sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana
GN=RH9 PE=2 SV=1
Length = 610
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/491 (66%), Positives = 376/491 (76%), Gaps = 20/491 (4%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKS-------GPVIPRHDDIIKSR 54
M S +L+RS TS+R L A++TS+ L +LA A + G + S
Sbjct: 1 MISTVLRRSI-LGTSRRTLAASVTSINAALFHNLAPAAATVSDLANGATNVKSLPSNSSP 59
Query: 55 FSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSS------------KDEGLDIS 102
F R+FH S P +F+SSI +A + +Y++ +GL I+
Sbjct: 60 FGVKVRDFHVKSVPSEFRSSIVSSAGFAAQEYAPSYENDGGIGDSESVGSSGGGDGLAIA 119
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
L IS +IV AL RGI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKII
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGV 222
KFN KHGRG+NP CLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR L+YG+
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRELNYGI 239
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VGTPGR+IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+IL++LP RQSMMF
Sbjct: 240 DVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMF 299
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SATMP WIRSLT KYL NPLT+DLVGDSDQKLADGI++YSIA Y + SIIG L+ EH
Sbjct: 300 SATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHG 359
Query: 343 KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
KGGKCIVFTQTKRDADRLA +AKSY CE LHGDISQ+QRERTL+ FRDG F+IL+ATDV
Sbjct: 360 KGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDV 419
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV 462
AARGLDVPNVDL+IHYELPN +ETFVHRTGRTGRAGKKGSAILI+ Q R VK IE++V
Sbjct: 420 AARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEV 479
Query: 463 GCRFTQVTSFS 473
G RF ++ S +
Sbjct: 480 GSRFNELPSIA 490
>sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp.
japonica GN=Os07g0143700 PE=2 SV=2
Length = 602
Score = 629 bits (1621), Expect = e-179, Method: Compositional matrix adjust.
Identities = 305/459 (66%), Positives = 365/459 (79%), Gaps = 26/459 (5%)
Query: 29 TILHSHLAAAKSGPVIPRHDDIIKSRFSAGT-----------------REFHAISRPLDF 71
++L L AA S P PR ++ + S R FH PL F
Sbjct: 3 SLLSRALCAASSSPAAPRGRSLLAALLSPSASPLDPCRGPAAPEPPRRRAFHGSPSPLGF 62
Query: 72 KSSIA-WQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
+S+ A W ++ V DD GL++++L IS IV LA RGI++LFPIQ+AVL
Sbjct: 63 RSTPASWSSPEAGA--AVGGDD-----GLEVARLGISPWIVERLAARGITRLFPIQRAVL 115
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190
+PAMQG+DMIGRARTGTGKTLAFGIPI+D+I++ NEK+G GRNPL ++LAPTRELA+QVE
Sbjct: 116 DPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAPTRELARQVE 175
Query: 191 KEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250
KEF ESAP LD++CVYGG PISHQMRAL+YGVD VVGTPGR+IDL++R LNLSE+QFVV
Sbjct: 176 KEFKESAP-LDSLCVYGGVPISHQMRALNYGVDVVVGTPGRIIDLLRRGVLNLSEIQFVV 234
Query: 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
LDEADQML+VGF EDVEVI+E LPQNRQSM+FSATMP WIR +T+KYLK+P+ +DLVGD
Sbjct: 235 LDEADQMLAVGFDEDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDE 294
Query: 311 DQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNC 370
DQKL +GISLYSIA+ Y KPSI+G LI EHA GGKCIVFTQTKR+ADRLA+AM +SY C
Sbjct: 295 DQKLPEGISLYSIASEHYGKPSILGPLIKEHANGGKCIVFTQTKREADRLAYAMGRSYAC 354
Query: 371 EPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHR 430
+ LHGDISQ+QRERTLS FRDGRFNIL+ATDVAARGLD+PNVDL+IHYELPNTSE FVHR
Sbjct: 355 QALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHR 414
Query: 431 TGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQV 469
+GRT RAGKKGSAILIYT+ QAR V+ IE+D+GC+FT++
Sbjct: 415 SGRTARAGKKGSAILIYTNDQARAVRIIEQDIGCKFTEL 453
>sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp.
japonica GN=Os12g0611200 PE=2 SV=1
Length = 628
Score = 581 bits (1498), Expect = e-165, Method: Compositional matrix adjust.
Identities = 277/435 (63%), Positives = 351/435 (80%), Gaps = 16/435 (3%)
Query: 50 IIKSRFSAGTREFHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEG-------- 98
++ R + FH+ L F+ + A A Q A D+ + Y++ +
Sbjct: 34 VVSRRATIPAAWFHSSPAWLGFRETGAAGAAARPQYAADEGLFYEEDKRGAKAGGVAAGG 93
Query: 99 ----LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
L+++KL IS IV+ LA RGI+KLFPIQ+AVLEPAMQG+DM+GRA+TGTGKTLAFG
Sbjct: 94 AEEGLEVAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFG 153
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214
IPILD II+ NEK+ G+ PL +VLAPTRELAKQVE+EF +S+ +++TICVYGGTPIS Q
Sbjct: 154 IPILDAIIRHNEKNSPGKFPLAIVLAPTRELAKQVEREFSDSS-NVETICVYGGTPISQQ 212
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+R L+YGVD V+GTPGRVIDL+KR ALNLSEV+FVVLDEADQMLSVGF EDVE IL+R+P
Sbjct: 213 IRQLNYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVP 272
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
RQ++MFSATMP WI+ LT KYLKNP+T+DLVG+ DQKLA+GISLYSIA+ + KP+++
Sbjct: 273 PKRQTLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVL 332
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
G+LI EHAKGGKCIVFTQTKRDADRL++ M +S+ C+ LHGDI+Q+QRERTL FR+G F
Sbjct: 333 GELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHF 392
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
NILIATDVAARGLD+PNVDL+IH+ELPN+SE FVHR+GRTGRAGKKG AI++++ QQ+R
Sbjct: 393 NILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRA 452
Query: 455 VKSIERDVGCRFTQV 469
++ +E DVGC+FT++
Sbjct: 453 IRMVENDVGCKFTEL 467
>sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis
thaliana GN=RH3 PE=1 SV=2
Length = 748
Score = 495 bits (1274), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/400 (61%), Positives = 301/400 (75%), Gaps = 4/400 (1%)
Query: 71 FKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
FKS H + +D ++ E L ISKL + Q + +L +RGI+ LFPIQ+AVL
Sbjct: 74 FKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVL 133
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----FNEKHGRGRNPLCLVLAPTRELA 186
PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ + + GR P LVLAPTRELA
Sbjct: 134 VPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELA 193
Query: 187 KQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246
KQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L L EV
Sbjct: 194 KQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEV 253
Query: 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L KYL NPL +DL
Sbjct: 254 EYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313
Query: 307 VGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK 366
VGD D+KLA+GI LY+IAT+ K +I+ LIT +AKGGK IVFTQTKRDAD ++ A++
Sbjct: 314 VGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN 373
Query: 367 SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSET 426
S E LHGDISQ QRERTL+AFR G+F +L+ATDVA+RGLD+PNVDL+IHYELPN ET
Sbjct: 374 SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPET 433
Query: 427 FVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRF 466
FVHR+GRTGRAGK+GSAIL++T Q R V+S+ERDVGC F
Sbjct: 434 FVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHF 473
>sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2
Length = 758
Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust.
Identities = 234/373 (62%), Positives = 296/373 (79%), Gaps = 2/373 (0%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++ L I++L + + +V+ L +RGI+ LFPIQ+AVL PA+ GRD+I RA+TGTGKTLAFGI
Sbjct: 101 EDELAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGI 160
Query: 156 PILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
P++ ++++ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 161 PMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNV 220
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++L
Sbjct: 221 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQL 280
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + K ++
Sbjct: 281 PAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTV 340
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ LIT +AKGGK IVFT+TKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G+
Sbjct: 341 LSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGK 400
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+ATDVAARGLD+PNVDLIIHYELPN ETFVHR+GRTGRAGK G+AIL++T+ Q R
Sbjct: 401 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRR 460
Query: 454 QVKSIERDVGCRF 466
V+S+ERDVGCRF
Sbjct: 461 TVRSLERDVGCRF 473
>sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1
Length = 737
Score = 316 bits (809), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 235/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 454 QVKSIERDVGCRFTQV 469
Q++ +E+ G F +V
Sbjct: 499 QLRYVEQKAGITFKRV 514
>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=3
Length = 851
Score = 315 bits (808), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 379
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 380 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 439
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 440 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 499
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 500 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 559
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y +++
Sbjct: 560 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEY 619
Query: 454 QVKSIERDVGCRFTQV 469
Q+ +E+ G +F ++
Sbjct: 620 QLAQVEQKAGIKFKRI 635
>sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1
Length = 734
Score = 315 bits (808), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 235/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 375
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 376 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 435
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G + Y ++
Sbjct: 436 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERG 495
Query: 454 QVKSIERDVGCRFTQV 469
Q++ +E+ G F +V
Sbjct: 496 QLRYVEQKAGITFKRV 511
>sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1
Length = 782
Score = 314 bits (805), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 233/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 184 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 243
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 244 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 303
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 304 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 363
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 364 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 423
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 424 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 483
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 484 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 543
Query: 454 QVKSIERDVGCRFTQV 469
Q+ +E+ G +F ++
Sbjct: 544 QLAQVEQKAGIKFKRI 559
>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5
Length = 783
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 232/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 488 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 547
Query: 454 QVKSIERDVGCRFTQV 469
Q+ +E+ G +F ++
Sbjct: 548 QLVQVEQKAGIKFKRI 563
>sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp.
japonica GN=Os09g0520700 PE=2 SV=1
Length = 696
Score = 311 bits (797), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 240/380 (63%), Gaps = 12/380 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 117 LANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILES 176
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELAKQV +F + + L CVYGG+ Q
Sbjct: 177 LVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQ 236
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
A+ GVD VVGTPGRV D +++ LN ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 237 EMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVE 296
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++ L+ ++LK+ TVDLVGD K + + ++ + +
Sbjct: 297 DVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARA 356
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I +++GG+ I+FT+TK A L+ +A S LHGD++Q+QRE L+ FR
Sbjct: 357 QVIPDIIRCYSRGGRTIIFTETKESASDLSGLIAGS---RALHGDVAQAQREVILAGFRS 413
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+F +L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A++++ +
Sbjct: 414 GKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRY 473
Query: 452 ARQVKSIERDVGCRFTQVTS 471
V IER+ G +F +++
Sbjct: 474 KFNVNRIERESGVKFEHISA 493
>sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7
PE=2 SV=1
Length = 685
Score = 310 bits (795), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 171/382 (44%), Positives = 238/382 (62%), Gaps = 17/382 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+S IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 109 LSNFRISKPLKDVLISKGIKALFPIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVES 168
Query: 161 IIKFNEK----HGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K G GR P LVL PTRELA QV +F + A L VYGG P Q
Sbjct: 169 LVNGRTKDLRRSGHGRLPSVLVLLPTRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQ 228
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ +L GVD VVGTPGRV DL+++ L L + F VLDEAD+ML +GF +DVE+IL ++
Sbjct: 229 ISSLTRGVDIVVGTPGRVKDLLEKGVLKLGSLLFRVLDEADEMLKMGFVDDVELILGKVD 288
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIA--TSMYE 329
Q+++FSAT+P W++ ++ ++LK+ TVDLV SDQK+ IS+ I S
Sbjct: 289 HVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVDLV--SDQKMKASISVRHIVIPCSASA 346
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
+P +I +I + GG+ I+FT+TK A +LA + PLHGDI Q+QRE TL F
Sbjct: 347 RPDLIPDIIRCYGSGGRSIIFTETKESASQLAGLLT---GARPLHGDIQQTQREVTLKGF 403
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449
R G+F L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A+++Y D
Sbjct: 404 RTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLY-D 462
Query: 450 QQARQVKSIERDVGCRFTQVTS 471
+ V IER+ G +F +++
Sbjct: 463 PKRSSVTKIERESGVKFEHLSA 484
>sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana
GN=RH7 PE=1 SV=2
Length = 671
Score = 308 bits (788), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 168/393 (42%), Positives = 243/393 (61%), Gaps = 13/393 (3%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
+ +D D +SK IS + L GI LFPIQ + + + G D++GRARTG
Sbjct: 85 LGVEDVEVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQ 144
Query: 148 GKTLAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--D 201
GKTLAF +PIL+ ++ K K G GR+P LVL PTRELAKQV +F SL
Sbjct: 145 GKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLS 204
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ C+YGG Q L GVD VVGTPGR+ D I+R L+ S +QF VLDEAD+ML +G
Sbjct: 205 SCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMG 264
Query: 262 FAEDVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
F EDVE+IL ++ + Q+++FSAT+P W+++++N++LK + T+DLVG+ K ++ +
Sbjct: 265 FVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSV 324
Query: 319 SLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDIS 378
+I + +I +I+ ++ GG+ I+F +TK L+ + S LHG+I
Sbjct: 325 RHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGS---RALHGEIP 381
Query: 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAG 438
QSQRE TL+ FR+G+F L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG
Sbjct: 382 QSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAG 441
Query: 439 KKGSAILIYTDQQARQVKSIERDVGCRFTQVTS 471
G A+ +Y D + V IE++ G +F + +
Sbjct: 442 NTGVAVTLY-DSRKSSVSRIEKEAGIKFEHLAA 473
>sp|P0A4D8|EXP9_STRR6 Probable ATP-dependent RNA helicase exp9 OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1
Length = 524
Score = 272 bits (696), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 143/349 (40%), Positives = 223/349 (63%), Gaps = 12/349 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
+L+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G +I
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSI 340
>sp|P0A4D7|EXP9_STRPN Probable ATP-dependent RNA helicase exp9 OS=Streptococcus
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
GN=exp9 PE=3 SV=1
Length = 524
Score = 272 bits (696), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 143/349 (40%), Positives = 223/349 (63%), Gaps = 12/349 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
+L+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G +I
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSI 340
>sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=Geobacillus
kaustophilus (strain HTA426) GN=cshA PE=3 SV=1
Length = 467
Score = 272 bits (696), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 151/362 (41%), Positives = 223/362 (61%), Gaps = 12/362 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+L +SQ+++ A+ R G + PIQ + ++Q +D+IG+A+TGTGKT AFGIPI++K+
Sbjct: 5 QELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKV 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
N K+ + LV+APTRELA QV +E ++ + + + +YGG I Q+RAL
Sbjct: 65 ---NVKNSAVQ---ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+VGTPGR+ID I R L L V VVLDEAD+ML++GF ED+E IL +P RQ+
Sbjct: 119 KHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP IR + +++ P V + + + I Y + +K I+ +L+
Sbjct: 179 LLFSATMPDPIRRIAERFMNEPELVKV--KAKEMTVPNIQQYYLEVHEKKKFDILTRLLD 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
A IVF +TKR D LA A+ + Y E +HGD+SQ++R L F++G IL+
Sbjct: 237 IQAP-ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILV 295
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ V + ++++P E++VHR GRTGRAGK G A+ T ++ Q+ I
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHI 355
Query: 459 ER 460
ER
Sbjct: 356 ER 357
>sp|P33906|DEAD_KLEPN Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3
SV=3
Length = 643
Score = 268 bits (685), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 226/373 (60%), Gaps = 13/373 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L+
Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRA 217
I R P LVLAPTRELA QV + EF + ++ + +YGG Q+RA
Sbjct: 68 I------DPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+ +FSATMP IR +T +++K P V + S D Y A M + +++ L
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEVR-IQSSVTTRPDISQSYWTAYGMRKNEALVRFL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I+F +TK +A A+ ++ YN L+GD++Q+ RE+ L +DGR +I
Sbjct: 241 EAEDFDA--AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
LIATDVAARGLDV + L+++Y++P SE++VHR GRTGRAG+ G A+L +++ R ++
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358
Query: 457 SIERDVGCRFTQV 469
+IER + +V
Sbjct: 359 NIERTMKLTIPEV 371
>sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp.
japonica GN=Os01g0172200 PE=2 SV=1
Length = 708
Score = 265 bits (678), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 141/351 (40%), Positives = 221/351 (62%), Gaps = 12/351 (3%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP--ILDKIIKFNE 166
+I+ + + G S PIQ A++ RD++ A+TG+GKTL + IP IL K ++ N
Sbjct: 190 EILREVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNS 249
Query: 167 KHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
+ G P LVL+PTRELA Q++ K+F S+ + ++C+YGG P Q+R L+ G D
Sbjct: 250 RDG----PTVLVLSPTRELATQIQDEAKKFGRSS-RISSVCLYGGAPKGPQLRDLERGAD 304
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VV TPGR+ D+++ ++L +V ++VLDEAD+ML +GF + I++++ RQ++MF+
Sbjct: 305 IVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFT 364
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIGQLITEHA 342
AT P +R + + L NP+ V+ +G++DQ +A+ I+ Y + EK + Q++
Sbjct: 365 ATWPKEVRKIASDLLSNPVQVN-IGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQE 423
Query: 343 KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G K I+F TKR D+LA +A+ Y +HGD SQ++R+ LS FR GR IL+ATDV
Sbjct: 424 PGSKIIIFCSTKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPILVATDV 483
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
AARGLD+ ++ ++++Y+ P E +VHR GRTGRAG G A + DQ ++
Sbjct: 484 AARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSK 534
>sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ZK / E33L) GN=cshA PE=3 SV=1
Length = 528
Score = 265 bits (677), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 142/361 (39%), Positives = 225/361 (62%), Gaps = 12/361 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VHR GRTGRAGKKG A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2
Length = 533
Score = 265 bits (677), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 142/361 (39%), Positives = 225/361 (62%), Gaps = 12/361 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VHR GRTGRAGKKG A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=cshA PE=3 SV=1
Length = 528
Score = 265 bits (676), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 142/361 (39%), Positives = 225/361 (62%), Gaps = 12/361 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VHR GRTGRAGKKG A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus anthracis
GN=cshA PE=3 SV=1
Length = 528
Score = 265 bits (676), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 142/361 (39%), Positives = 225/361 (62%), Gaps = 12/361 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VHR GRTGRAGKKG A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
(strain Al Hakam) GN=cshA PE=3 SV=1
Length = 528
Score = 265 bits (676), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 142/361 (39%), Positives = 225/361 (62%), Gaps = 12/361 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VHR GRTGRAGKKG A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 10987) GN=cshA PE=3 SV=1
Length = 525
Score = 265 bits (676), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 142/361 (39%), Positives = 225/361 (62%), Gaps = 12/361 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VHR GRTGRAGKKG A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>sp|Q49Z29|Y802_STAS1 Probable DEAD-box ATP-dependent RNA helicase SSP0802
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=SSP0802 PE=3 SV=1
Length = 506
Score = 263 bits (673), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/367 (39%), Positives = 231/367 (62%), Gaps = 18/367 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + L G ++ PIQK + A++G+D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDKMAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRA 217
K+ ++ G L+LAPTRELA QV + A ++ + V+GG PI Q++A
Sbjct: 63 KVA---DQEG----VQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKA 115
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QN 276
L G VVGTPGRVID + R L +++ ++LDEAD+M+++GF +D++ I++++P +
Sbjct: 116 LKKGPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQ 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP I++L +++K+P+ V + + SD ++ + Y+I + EK
Sbjct: 176 RQTMLFSATMPKAIQTLVQQFMKSPVIVKTMNNEMSDPQIEE---YYTIVKEL-EKFDTF 231
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++ +
Sbjct: 232 TSFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQ 290
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
+IL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGKKG AI +
Sbjct: 291 LDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMD 350
Query: 454 QVKSIER 460
++ IE+
Sbjct: 351 YIRQIEQ 357
>sp|Q8XA87|DEAD_ECO57 Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD
PE=3 SV=3
Length = 629
Score = 263 bits (673), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 225/373 (60%), Gaps = 13/373 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRA 217
+ + P LVLAPTRELA QV + +F + ++ + +YGG Q+RA
Sbjct: 68 L------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+ +FSATMP IR +T +++K P V + S D Y M + +++ L
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEVR-IQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I+F +TK +A A+ ++ YN L+GD++Q+ RE+TL +DGR +I
Sbjct: 241 EAEDFDA--AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
LIATDVAARGLDV + L+++Y++P SE++VHR GRTGRAG+ G A+L +++ R ++
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358
Query: 457 SIERDVGCRFTQV 469
+IER + +V
Sbjct: 359 NIERTMKLTIPEV 371
>sp|P0A9P8|DEAD_SHIFL Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3
SV=2
Length = 629
Score = 263 bits (672), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 225/373 (60%), Gaps = 13/373 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRA 217
+ + P LVLAPTRELA QV + +F + ++ + +YGG Q+RA
Sbjct: 68 L------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+ +FSATMP IR +T +++K P V + S D Y M + +++ L
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEVR-IQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I+F +TK +A A+ ++ YN L+GD++Q+ RE+TL +DGR +I
Sbjct: 241 EAEDFDA--AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
LIATDVAARGLDV + L+++Y++P SE++VHR GRTGRAG+ G A+L +++ R ++
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358
Query: 457 SIERDVGCRFTQV 469
+IER + +V
Sbjct: 359 NIERTMKLTIPEV 371
>sp|P0A9P6|DEAD_ECOLI Cold-shock DEAD box protein A OS=Escherichia coli (strain K12)
GN=deaD PE=1 SV=2
Length = 629
Score = 263 bits (672), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 225/373 (60%), Gaps = 13/373 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRA 217
+ + P LVLAPTRELA QV + +F + ++ + +YGG Q+RA
Sbjct: 68 L------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+ +FSATMP IR +T +++K P V + S D Y M + +++ L
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEVR-IQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I+F +TK +A A+ ++ YN L+GD++Q+ RE+TL +DGR +I
Sbjct: 241 EAEDFDA--AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
LIATDVAARGLDV + L+++Y++P SE++VHR GRTGRAG+ G A+L +++ R ++
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358
Query: 457 SIERDVGCRFTQV 469
+IER + +V
Sbjct: 359 NIERTMKLTIPEV 371
>sp|P0A9P7|DEAD_ECOL6 Cold-shock DEAD box protein A OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=deaD PE=3 SV=2
Length = 629
Score = 263 bits (672), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 225/373 (60%), Gaps = 13/373 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRA 217
+ + P LVLAPTRELA QV + +F + ++ + +YGG Q+RA
Sbjct: 68 L------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+ +FSATMP IR +T +++K P V + S D Y M + +++ L
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEVR-IQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I+F +TK +A A+ ++ YN L+GD++Q+ RE+TL +DGR +I
Sbjct: 241 EAEDFDA--AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
LIATDVAARGLDV + L+++Y++P SE++VHR GRTGRAG+ G A+L +++ R ++
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358
Query: 457 SIERDVGCRFTQV 469
+IER + +V
Sbjct: 359 NIERTMKLTIPEV 371
>sp|Q8K9H6|DEAD_BUCAP Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=deaD PE=3 SV=1
Length = 601
Score = 263 bits (672), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 227/372 (61%), Gaps = 14/372 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S L ++ I+ +L++ G K PIQ A + ++GRD++G A+TG+GKT AF +P+L +
Sbjct: 9 SFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNL 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQMRAL 218
N K P LVLAPTRELA QV + F + + + I V YGG Q+RAL
Sbjct: 69 -NINLKA-----PQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRAL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGR++D +KR LNLS + +VLDEAD+ML +GF EDVE I+ ++P+ Q
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKEHQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+ +FSATMP IR ++ +++KNP + + + + S + + Y + +
Sbjct: 183 TALFSATMPEAIRRISKRFMKNPQEIKIQSNITTRPDIKQSYWMV----YGRKTDALIRF 238
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK ++ A+ ++ YN L+GD++Q+ RE+TL + GR +IL
Sbjct: 239 LEVEDFSATIIFVKTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKSGRLDIL 298
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + +I+Y++P SE++VHR GRTGRAG+ G A+L +++ R +++
Sbjct: 299 IATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 358
Query: 458 IERDVGCRFTQV 469
IER + +V
Sbjct: 359 IERTINQTIPEV 370
>sp|Q11039|DEAD_MYCTU Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis
GN=deaD PE=3 SV=1
Length = 563
Score = 263 bits (671), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 149/364 (40%), Positives = 224/364 (61%), Gaps = 15/364 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L I ++ A+ G IQ A + M G D++G A+TGTGKT AF IP+L K
Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRA 217
I + + P LVL PTRELA QV + F L+ + +YGG+ + Q+
Sbjct: 75 IDITS------KVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR+ID ++R L+LS V F+VLDEAD+ML++GFA+DVE IL P+ +
Sbjct: 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q +FSATMPP IR L+ KYL +P V + +A+ IS I + K + ++
Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTC--KAKTAVAENISQSYIQVA--RKMDALTRV 244
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ E IVF +TK+ + +A + A+ ++ + GD+ Q+QRERT++A RDG +I
Sbjct: 245 L-EVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDI 303
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A++ + ++ +K
Sbjct: 304 LVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLK 363
Query: 457 SIER 460
+IE+
Sbjct: 364 AIEK 367
>sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana
GN=RH5 PE=1 SV=1
Length = 537
Score = 263 bits (671), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 151/336 (44%), Positives = 212/336 (63%), Gaps = 14/336 (4%)
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR---NPLCLVLA 180
PIQ + GRD+IG A+TG+GKTLAFGIP + ++K N+K G G NP CLVL+
Sbjct: 139 PIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLS 198
Query: 181 PTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR 238
PTRELA Q+ E+ L +ICVYGG+ Q+ A+ GVD V+GTPGR+ DLI+
Sbjct: 199 PTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIES 258
Query: 239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
N L LS+V FVVLDEAD+ML +GF E V IL + RQ +MFSAT P + L +++
Sbjct: 259 NVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFM 318
Query: 299 -KNPLTVDLVGDSDQKLADGISLYSIATSMYEKP---SIIGQLITEH-AKGGKCIVFTQT 353
NP+ V ++G D LA + I + E+ +I L H ++ + +VF
Sbjct: 319 DPNPIKV-IIGSVD--LAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALY 375
Query: 354 KRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
K +A+RL + + + +HG+ +QS+R R+LS F++G +L+ATDVAARGLD+P+V
Sbjct: 376 KVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDV 435
Query: 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448
+++I+Y P T+E +VHR GRTGRAGKKG A +T
Sbjct: 436 EVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFT 471
>sp|Q2FWH5|Y2316_STAA8 Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316
OS=Staphylococcus aureus (strain NCTC 8325)
GN=SAOUHSC_02316 PE=3 SV=1
Length = 506
Score = 262 bits (669), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 229/375 (61%), Gaps = 20/375 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ NIL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 290 QINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349
Query: 453 RQVKSIERDVGCRFT 467
++ IE G + +
Sbjct: 350 DYIRQIEDANGRKMS 364
>sp|Q99SH6|Y2081_STAAM Probable DEAD-box ATP-dependent RNA helicase SAV2081
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=SAV2081 PE=3 SV=1
Length = 506
Score = 262 bits (669), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 229/375 (61%), Gaps = 20/375 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ NIL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 290 QINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349
Query: 453 RQVKSIERDVGCRFT 467
++ IE G + +
Sbjct: 350 DYIRQIEDANGRKMS 364
>sp|Q5HEB9|Y2072_STAAC Probable DEAD-box ATP-dependent RNA helicase SACOL2072
OS=Staphylococcus aureus (strain COL) GN=SACOL2072 PE=3
SV=1
Length = 506
Score = 262 bits (669), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 229/375 (61%), Gaps = 20/375 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ NIL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 290 QINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349
Query: 453 RQVKSIERDVGCRFT 467
++ IE G + +
Sbjct: 350 DYIRQIEDANGRKMS 364
>sp|Q2FF45|Y2037_STAA3 Probable DEAD-box ATP-dependent RNA helicase SAUSA300_2037
OS=Staphylococcus aureus (strain USA300)
GN=SAUSA300_2037 PE=3 SV=1
Length = 506
Score = 262 bits (669), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 229/375 (61%), Gaps = 20/375 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ NIL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 290 QINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349
Query: 453 RQVKSIERDVGCRFT 467
++ IE G + +
Sbjct: 350 DYIRQIEDANGRKMS 364
>sp|Q7A0D2|Y2004_STAAW Probable DEAD-box ATP-dependent RNA helicase MW2004
OS=Staphylococcus aureus (strain MW2) GN=MW2004 PE=3
SV=1
Length = 506
Score = 262 bits (669), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 229/375 (61%), Gaps = 20/375 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ NIL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 290 QINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349
Query: 453 RQVKSIERDVGCRFT 467
++ IE G + +
Sbjct: 350 DYIRQIEDANGRKMS 364
>sp|Q6G7M9|Y1985_STAAS Probable DEAD-box ATP-dependent RNA helicase SAS1985
OS=Staphylococcus aureus (strain MSSA476) GN=SAS1985
PE=3 SV=1
Length = 506
Score = 262 bits (669), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 229/375 (61%), Gaps = 20/375 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ NIL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 290 QINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349
Query: 453 RQVKSIERDVGCRFT 467
++ IE G + +
Sbjct: 350 DYIRQIEDANGRKMS 364
>sp|Q7A4G0|Y1885_STAAN Probable DEAD-box ATP-dependent RNA helicase SA1885
OS=Staphylococcus aureus (strain N315) GN=SA1885 PE=1
SV=1
Length = 506
Score = 262 bits (669), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 229/375 (61%), Gaps = 20/375 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ NIL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 290 QINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349
Query: 453 RQVKSIERDVGCRFT 467
++ IE G + +
Sbjct: 350 DYIRQIEDANGRKMS 364
>sp|Q6GEZ3|Y2168_STAAR Probable DEAD-box ATP-dependent RNA helicase SAR2168
OS=Staphylococcus aureus (strain MRSA252) GN=SAR2168
PE=3 SV=1
Length = 506
Score = 261 bits (668), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 229/375 (61%), Gaps = 20/375 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ NIL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 290 QINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349
Query: 453 RQVKSIERDVGCRFT 467
++ IE G + +
Sbjct: 350 DYIRQIEDANGRKMS 364
>sp|Q2YUH3|Y1965_STAAB Probable DEAD-box ATP-dependent RNA helicase SAB1965c
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=SAB1965c PE=3 SV=1
Length = 506
Score = 261 bits (667), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 146/374 (39%), Positives = 228/374 (60%), Gaps = 18/374 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K++ K G L+LAPTRELA QV ++ E + + V+GG PI Q++A
Sbjct: 63 KVV---WKQG----VQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKA 115
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-N 276
L G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 116 LKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 176 RQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTF 231
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++ +
Sbjct: 232 TNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQ 290
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
NIL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 291 INILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
Query: 454 QVKSIERDVGCRFT 467
++ IE G + +
Sbjct: 351 YIRQIEDANGRKMS 364
>sp|Q4L7W0|Y956_STAHJ Probable DEAD-box ATP-dependent RNA helicase SH0956
OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=SH0956 PE=3 SV=1
Length = 503
Score = 260 bits (665), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 144/375 (38%), Positives = 230/375 (61%), Gaps = 20/375 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS V L G + PIQK + ++G+D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDKTVETLEAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G++ + L+LAPTRELA QV ++ E ++ + V+GG PI Q++
Sbjct: 63 KVV--------GQSGVQALILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-Q 275
AL G VVGTPGRVID + R L + + ++LDEAD+M+++GF +D+ I++++P +
Sbjct: 115 ALKRGPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAE 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I++L +++K+P V + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQTLVQQFMKSPQIVKTMNNEMSDPQIDE---YYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ +IL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 290 QIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349
Query: 453 RQVKSIERDVGCRFT 467
++ IE G R
Sbjct: 350 DYIRQIEDSNGRRMN 364
>sp|P57453|DEAD_BUCAI Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=deaD PE=3 SV=1
Length = 601
Score = 259 bits (661), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 146/364 (40%), Positives = 223/364 (61%), Gaps = 14/364 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S L ++ I+ +L G K PIQ + + ++GRD++G A+TG+GKT AF +P+L
Sbjct: 8 FSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHN 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQMRA 217
+ N K P LVLAPTRELA QV + F + + + I V YGG Q+RA
Sbjct: 68 L-NINLKA-----PQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D +KR LNLS + +VLDEAD+ML +GF EDVE I+ ++P+
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEH 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+ +FSATMP IR ++ ++++NP + + + + S + + Y + +
Sbjct: 182 QTALFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPDIKQSYWMV----YGRKTDALIR 237
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I+F +TK ++ A+ ++ YN L+GD++Q+ RE+TL ++GR +I
Sbjct: 238 FLEAEDFSATIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDI 297
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
LIATDVAARGLDV + +I+Y++P SE++VHR GRTGRAG+ G A+L +++ R ++
Sbjct: 298 LIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 357
Query: 457 SIER 460
+IER
Sbjct: 358 NIER 361
>sp|Q89AF9|DEAD_BUCBP Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=deaD PE=3 SV=1
Length = 602
Score = 258 bits (660), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 145/377 (38%), Positives = 223/377 (59%), Gaps = 14/377 (3%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
+ S ++ I+ AL G + PIQ A + ++G+D++G A+TG+GKT AF +P+
Sbjct: 5 NMTFSSFGLNSCIITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPL 64
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQ 214
L I K + R P LVL PTRELA QV + F + L + +YGG Q
Sbjct: 65 LHNI-KLDV-----RVPQILVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQ 118
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+++L G +VGTPGR++D +KR L+LS + +VLDEAD+ML +GF EDVE I+ +P
Sbjct: 119 LKSLRKGPQIIVGTPGRLLDHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIP 178
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
Q+ +FSATMP IR ++ +++KNP + + + + S + + Y K +
Sbjct: 179 DRHQTALFSATMPEAIRRISRRFMKNPKEIRIQSNITTRPDIQQSYWMV----YGKKTDA 234
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 393
E I+F +TK ++ + + YN L+GD++QS RE+TL +DGR
Sbjct: 235 LIRFLEAEDFSATIIFVRTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTLEKLKDGR 294
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
+ILIATDVAARGLDV + +I+Y++P SE++VHR GRTGRAG+KG A+L +++ R
Sbjct: 295 LDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERR 354
Query: 454 QVKSIERDVGCRFTQVT 470
+++IER + ++V
Sbjct: 355 LLRNIERAMNISISEVN 371
>sp|Q5HME0|Y1688_STAEQ Probable DEAD-box ATP-dependent RNA helicase SERP1688
OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=SERP1688 PE=3 SV=1
Length = 509
Score = 257 bits (657), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 145/373 (38%), Positives = 226/373 (60%), Gaps = 21/373 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS V L G + PIQK + A++G D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-Q 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P +
Sbjct: 115 ALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAE 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I+ L +++K P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDE---YYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ +IL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 290 QIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349
Query: 453 RQVKSIERDVGCR 465
++ IE DV R
Sbjct: 350 DYIRQIE-DVNNR 361
>sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioides immitis (strain RS)
GN=DBP3 PE=3 SV=2
Length = 515
Score = 256 bits (654), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 228/389 (58%), Gaps = 23/389 (5%)
Query: 81 QSAVDDYVAYD-----DSSKDEGL-DISKLDI----SQDIVAALARRGISKLFPIQKAVL 130
QS +D+Y++ + D S D L I+ S D+ L + S PIQ
Sbjct: 73 QSTIDEYLSSNSIHIADPSTDPSLRPITSFSFLPESSNDLYLPLEK--FSSPTPIQAVSW 130
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190
A GRD+IG A TG+GKTLAFG+P L ++++ N + P L++ PTRELA Q+
Sbjct: 131 PLAFAGRDLIGVAETGSGKTLAFGLPCLRRVLELNNSETSCK-PCALIITPTRELAVQIY 189
Query: 191 KEFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248
+ + ++D C+YGG+P HQ R + V+ TPGR+ D +NLS V++
Sbjct: 190 DQLLRFSSAVDVGIACIYGGSPKDHQRREI-RNASVVIATPGRLKDFQADQTINLSGVKY 248
Query: 249 VVLDEADQMLSVGFAEDVEVILERLP--QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+VLDEAD+ML GF +D++ I++ +P Q RQ++MF+AT P +R+L + KNP+TV +
Sbjct: 249 LVLDEADRMLDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAASFTKNPVTVTI 308
Query: 307 VGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK----CIVFTQTKRDADRLAH 362
SD + I YEK S + +L+ + GGK +VF K++A R+
Sbjct: 309 GDSSDIRANKRIKQMVEVLQPYEKDSRLLELLRRYQDGGKNNHRILVFCLYKKEAMRVER 368
Query: 363 AM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELP 421
+ +K + +HGD+SQ++R R+L AF+ G ++L+ATDVAARGLD+P V L+++ P
Sbjct: 369 FIGSKGFKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKLVLNVTFP 428
Query: 422 NTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
T E +VHR GRTGRAG +G AI ++T++
Sbjct: 429 LTIEDYVHRIGRTGRAGAEGLAITLFTER 457
>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana
GN=RH20 PE=1 SV=1
Length = 501
Score = 256 bits (653), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 221/376 (58%), Gaps = 20/376 (5%)
Query: 97 EGLDISK-------LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
EG DI K + ++ + + G ++ PIQ AM+GRD+IG A TG+GK
Sbjct: 90 EGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGK 149
Query: 150 TLAFGIPILDKIIKFNEK----HGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTI 203
TL++ +P I+ N + HG G P+ LVLAPTRELA Q+++E + S+ + T
Sbjct: 150 TLSYLLP---AIVHVNAQPMLAHGDG--PIVLVLAPTRELAVQIQQEASKFGSSSKIKTT 204
Query: 204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263
C+YGG P Q+R L GV+ V+ TPGR+ID+++ N NL V ++VLDEAD+ML +GF
Sbjct: 205 CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFD 264
Query: 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
+ I+ + +RQ++ +SAT P + L+ K+L NP V ++G SD K I
Sbjct: 265 PQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKV-IIGSSDLKANRAIRQIVD 323
Query: 324 ATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQR 382
S +K + + +L+ + G + +VF TK+ D++ + + +HGD SQ++R
Sbjct: 324 VISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAER 383
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS 442
+ LS FR G+ I+ ATDVAARGLDV +V +I+Y+ P + E +VHR GRTGRAG KG+
Sbjct: 384 DWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGT 443
Query: 443 AILIYTDQQARQVKSI 458
A +T AR K +
Sbjct: 444 AYTFFTVANARFAKEL 459
>sp|Q8CRP6|Y1679_STAES Probable DEAD-box ATP-dependent RNA helicase SE_1679
OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=SE_1679 PE=3 SV=1
Length = 509
Score = 255 bits (652), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 144/373 (38%), Positives = 225/373 (60%), Gaps = 21/373 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS V L G + PIQK + A++G D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-Q 275
L G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P +
Sbjct: 115 VLKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAE 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I+ L +++K P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDE---YYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ +IL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 290 QIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349
Query: 453 RQVKSIERDVGCR 465
++ IE DV R
Sbjct: 350 DYIRQIE-DVNNR 361
>sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana
GN=RH14 PE=1 SV=2
Length = 619
Score = 253 bits (647), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 133/345 (38%), Positives = 205/345 (59%), Gaps = 8/345 (2%)
Query: 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177
G S PIQ AMQGRD++ A+TG+GKTL + IP + + G P L
Sbjct: 177 GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMG--PTIL 234
Query: 178 VLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID 234
VL+PTRELA Q+++E F S+ + C+YGG P Q+R L+ G D VV TPGR+ D
Sbjct: 235 VLSPTRELATQIQEEAVKFGRSS-RISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 235 LIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294
+++ ++L ++ ++VLDEAD+ML +GF + I++ +P RQ++M++AT P +R +
Sbjct: 294 ILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIA 353
Query: 295 NKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQT 353
L NP V+ +G+ D+ +A+ I+ + + EK + Q++ G K I+F T
Sbjct: 354 ADLLVNPAQVN-IGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCST 412
Query: 354 KRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD 413
KR D+L + + + +HGD SQ +R+ L+ FR GR +L+ATDVAARGLDV ++
Sbjct: 413 KRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIR 472
Query: 414 LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
+++Y+ PN E +VHR GRTGRAG G A + DQ ++ +
Sbjct: 473 AVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDL 517
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,253,391
Number of Sequences: 539616
Number of extensions: 7091744
Number of successful extensions: 25092
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1725
Number of HSP's successfully gapped in prelim test: 173
Number of HSP's that attempted gapping in prelim test: 18457
Number of HSP's gapped (non-prelim): 2424
length of query: 475
length of database: 191,569,459
effective HSP length: 121
effective length of query: 354
effective length of database: 126,275,923
effective search space: 44701676742
effective search space used: 44701676742
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)