Query 011901
Match_columns 475
No_of_seqs 308 out of 2630
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:28:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011901.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011901hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 1.8E-69 3.9E-74 516.3 34.4 373 98-470 90-468 (519)
2 KOG0330 ATP-dependent RNA heli 100.0 3.5E-66 7.7E-71 463.0 31.9 365 95-468 57-425 (476)
3 KOG0328 Predicted ATP-dependen 100.0 9.2E-64 2E-68 429.1 26.7 365 97-470 25-393 (400)
4 PTZ00110 helicase; Provisional 100.0 4.5E-62 9.9E-67 491.2 43.2 376 93-470 124-504 (545)
5 COG0513 SrmB Superfamily II DN 100.0 1.9E-62 4.1E-67 489.2 39.8 364 99-467 29-398 (513)
6 PRK04837 ATP-dependent RNA hel 100.0 1.3E-60 2.8E-65 471.4 40.2 369 97-468 6-380 (423)
7 PRK10590 ATP-dependent RNA hel 100.0 3.6E-60 7.8E-65 471.0 40.9 366 100-468 2-370 (456)
8 PRK11776 ATP-dependent RNA hel 100.0 6E-60 1.3E-64 471.7 41.3 360 99-468 4-367 (460)
9 PLN00206 DEAD-box ATP-dependen 100.0 1.5E-59 3.2E-64 471.9 42.9 375 93-470 115-495 (518)
10 KOG0342 ATP-dependent RNA heli 100.0 5E-60 1.1E-64 436.0 32.9 361 97-459 80-446 (543)
11 KOG0326 ATP-dependent RNA heli 100.0 2.4E-61 5.2E-66 421.0 22.4 373 89-471 75-450 (459)
12 PRK11634 ATP-dependent RNA hel 100.0 3.8E-59 8.2E-64 473.6 42.1 363 99-470 6-372 (629)
13 KOG0336 ATP-dependent RNA heli 100.0 1E-60 2.2E-65 430.0 26.5 419 51-470 165-592 (629)
14 KOG0333 U5 snRNP-like RNA heli 100.0 1.1E-59 2.3E-64 435.9 32.3 366 94-462 240-636 (673)
15 PRK04537 ATP-dependent RNA hel 100.0 8.1E-59 1.8E-63 469.0 41.6 367 99-468 9-382 (572)
16 KOG0345 ATP-dependent RNA heli 100.0 3.9E-59 8.5E-64 427.2 33.8 354 104-459 11-373 (567)
17 KOG0340 ATP-dependent RNA heli 100.0 9.4E-60 2E-64 416.9 28.7 367 98-470 6-381 (442)
18 KOG0343 RNA Helicase [RNA proc 100.0 3.5E-59 7.6E-64 434.7 30.8 375 90-469 60-441 (758)
19 PRK11192 ATP-dependent RNA hel 100.0 2.5E-57 5.4E-62 450.2 42.3 364 100-468 2-370 (434)
20 KOG0338 ATP-dependent RNA heli 100.0 1.1E-58 2.3E-63 427.7 27.7 358 98-461 180-544 (691)
21 PRK01297 ATP-dependent RNA hel 100.0 5.3E-57 1.2E-61 451.5 42.2 372 96-470 84-463 (475)
22 COG1200 RecG RecG-like helicas 100.0 2.1E-57 4.5E-62 439.9 29.6 404 12-451 162-592 (677)
23 KOG0348 ATP-dependent RNA heli 100.0 1.2E-56 2.5E-61 416.5 29.4 369 96-464 133-568 (708)
24 PTZ00424 helicase 45; Provisio 100.0 2.7E-55 5.8E-60 432.9 40.2 364 98-470 27-394 (401)
25 KOG0335 ATP-dependent RNA heli 100.0 3.8E-56 8.3E-61 417.5 27.9 370 100-471 75-465 (482)
26 KOG0346 RNA helicase [RNA proc 100.0 1.8E-55 4E-60 399.6 29.9 363 99-462 19-422 (569)
27 KOG0339 ATP-dependent RNA heli 100.0 9.8E-55 2.1E-59 401.1 33.3 372 91-464 215-589 (731)
28 KOG0341 DEAD-box protein abstr 100.0 4.5E-56 9.7E-61 397.5 16.3 366 93-462 164-541 (610)
29 PRK10917 ATP-dependent DNA hel 100.0 1E-53 2.3E-58 440.9 34.0 413 12-460 162-603 (681)
30 TIGR00643 recG ATP-dependent D 100.0 2E-53 4.3E-58 436.2 34.3 403 10-447 132-563 (630)
31 TIGR03817 DECH_helic helicase/ 100.0 6.4E-52 1.4E-56 429.0 40.9 348 105-468 20-406 (742)
32 KOG0347 RNA helicase [RNA proc 100.0 3.5E-54 7.5E-59 401.3 20.0 371 99-474 181-593 (731)
33 KOG0334 RNA helicase [RNA proc 100.0 3.7E-52 8E-57 417.1 29.8 376 92-470 358-740 (997)
34 KOG0327 Translation initiation 100.0 2.4E-52 5.2E-57 375.4 25.4 362 99-471 26-391 (397)
35 TIGR00580 mfd transcription-re 100.0 1.9E-49 4.2E-54 413.9 36.9 366 67-461 391-787 (926)
36 PLN03137 ATP-dependent DNA hel 100.0 6.2E-49 1.3E-53 403.9 37.5 340 103-460 441-797 (1195)
37 KOG0332 ATP-dependent RNA heli 100.0 1.5E-49 3.2E-54 354.3 25.8 367 93-471 84-465 (477)
38 TIGR00614 recQ_fam ATP-depende 100.0 1.8E-48 4E-53 388.2 36.3 323 117-460 7-343 (470)
39 KOG4284 DEAD box protein [Tran 100.0 1.7E-49 3.7E-54 375.9 24.3 365 94-468 20-402 (980)
40 KOG0337 ATP-dependent RNA heli 100.0 7E-50 1.5E-54 361.6 20.0 365 98-469 20-387 (529)
41 KOG0350 DEAD-box ATP-dependent 100.0 7.2E-49 1.6E-53 362.1 24.7 350 109-464 147-554 (620)
42 PRK10689 transcription-repair 100.0 4.6E-47 9.9E-52 404.3 37.8 366 67-461 540-936 (1147)
43 PRK13767 ATP-dependent helicas 100.0 6E-47 1.3E-51 399.7 37.2 361 106-469 18-419 (876)
44 PRK02362 ski2-like helicase; P 100.0 4E-47 8.7E-52 397.8 35.1 351 100-469 2-415 (737)
45 PRK11057 ATP-dependent DNA hel 100.0 1.8E-46 4E-51 383.3 38.8 331 105-458 8-351 (607)
46 TIGR01389 recQ ATP-dependent D 100.0 1.5E-45 3.3E-50 377.9 36.7 327 112-459 3-340 (591)
47 PRK00254 ski2-like helicase; P 100.0 2.1E-45 4.7E-50 383.9 35.4 352 100-468 2-404 (720)
48 KOG0344 ATP-dependent RNA heli 100.0 5.7E-46 1.2E-50 351.1 24.9 370 96-468 129-516 (593)
49 COG1201 Lhr Lhr-like helicases 100.0 1E-44 2.2E-49 365.8 32.2 358 105-468 7-382 (814)
50 COG1197 Mfd Transcription-repa 100.0 1.1E-44 2.3E-49 370.4 28.4 385 47-460 499-929 (1139)
51 PRK01172 ski2-like helicase; P 100.0 5E-44 1.1E-48 372.2 33.5 348 100-468 2-394 (674)
52 PRK09751 putative ATP-dependen 100.0 6.8E-42 1.5E-46 366.4 33.3 325 141-470 1-407 (1490)
53 KOG0329 ATP-dependent RNA heli 100.0 1E-43 2.2E-48 301.4 15.1 330 100-471 43-377 (387)
54 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.4E-41 3E-46 345.1 32.2 316 111-447 5-388 (844)
55 COG0514 RecQ Superfamily II DN 100.0 5.2E-41 1.1E-45 327.3 28.7 328 112-459 7-346 (590)
56 PHA02653 RNA helicase NPH-II; 100.0 3.1E-40 6.6E-45 333.8 31.5 315 124-459 167-523 (675)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 7.4E-39 1.6E-43 331.3 33.5 302 125-453 6-339 (819)
58 COG1202 Superfamily II helicas 100.0 1.6E-39 3.4E-44 305.1 24.7 337 97-449 192-552 (830)
59 COG1111 MPH1 ERCC4-like helica 100.0 4.5E-38 9.8E-43 293.2 34.2 321 120-451 14-482 (542)
60 PHA02558 uvsW UvsW helicase; P 100.0 3.3E-38 7.2E-43 316.1 32.6 304 120-446 113-449 (501)
61 TIGR01587 cas3_core CRISPR-ass 100.0 4.7E-39 1E-43 312.1 24.2 301 138-451 1-337 (358)
62 PRK09401 reverse gyrase; Revie 100.0 5.8E-38 1.3E-42 335.5 34.7 287 110-422 69-410 (1176)
63 PRK11664 ATP-dependent RNA hel 100.0 3.5E-38 7.7E-43 327.2 30.3 302 125-453 9-342 (812)
64 COG1204 Superfamily II helicas 100.0 8.7E-38 1.9E-42 320.1 29.8 332 103-447 13-405 (766)
65 COG1205 Distinct helicase fami 100.0 1.1E-37 2.4E-42 323.9 29.8 332 107-450 56-422 (851)
66 PRK14701 reverse gyrase; Provi 100.0 6E-37 1.3E-41 334.2 31.6 328 108-459 66-465 (1638)
67 TIGR01054 rgy reverse gyrase. 100.0 8.7E-36 1.9E-40 319.3 33.2 290 108-422 65-409 (1171)
68 PRK12898 secA preprotein trans 100.0 6.4E-36 1.4E-40 297.6 29.5 315 117-451 100-587 (656)
69 KOG0349 Putative DEAD-box RNA 100.0 4.2E-37 9.1E-42 279.6 17.6 297 171-470 284-667 (725)
70 PRK13766 Hef nuclease; Provisi 100.0 8.9E-35 1.9E-39 308.6 38.2 324 118-452 12-481 (773)
71 KOG0354 DEAD-box like helicase 100.0 6.7E-36 1.5E-40 294.8 27.2 332 118-459 59-538 (746)
72 TIGR00603 rad25 DNA repair hel 100.0 2.2E-35 4.8E-40 297.1 31.2 308 120-454 254-611 (732)
73 TIGR03158 cas3_cyano CRISPR-as 100.0 5.4E-35 1.2E-39 280.4 30.8 288 125-435 1-357 (357)
74 PRK09200 preprotein translocas 100.0 3.1E-35 6.6E-40 298.9 28.9 317 117-452 75-543 (790)
75 PRK05580 primosome assembly pr 100.0 1.6E-33 3.4E-38 289.9 37.8 313 119-451 142-550 (679)
76 TIGR03714 secA2 accessory Sec 100.0 1E-34 2.2E-39 292.3 27.6 316 121-452 68-539 (762)
77 TIGR00963 secA preprotein tran 100.0 4.2E-34 9.2E-39 286.0 30.0 316 117-452 53-519 (745)
78 KOG0351 ATP-dependent DNA heli 100.0 2.2E-34 4.8E-39 296.9 27.2 334 109-460 251-602 (941)
79 KOG0352 ATP-dependent DNA heli 100.0 1.7E-34 3.6E-39 262.3 20.6 332 109-458 6-370 (641)
80 KOG0952 DNA/RNA helicase MER3/ 100.0 3.7E-33 8.1E-38 278.6 28.2 336 117-458 106-499 (1230)
81 PRK11131 ATP-dependent RNA hel 100.0 1.8E-32 3.9E-37 289.3 31.2 303 124-454 77-415 (1294)
82 TIGR00595 priA primosomal prot 100.0 2.5E-32 5.4E-37 271.3 30.1 289 140-448 1-379 (505)
83 KOG0353 ATP-dependent DNA heli 100.0 8.7E-33 1.9E-37 247.8 22.4 339 100-456 72-473 (695)
84 COG1061 SSL2 DNA or RNA helica 100.0 8.1E-32 1.8E-36 264.6 27.6 294 120-436 35-375 (442)
85 PRK04914 ATP-dependent helicas 100.0 2.7E-31 5.8E-36 276.8 31.5 334 121-465 152-618 (956)
86 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.9E-31 4.2E-36 282.5 27.7 303 127-454 73-408 (1283)
87 PRK09694 helicase Cas3; Provis 100.0 2.2E-30 4.7E-35 268.4 31.8 310 119-439 284-664 (878)
88 cd00268 DEADc DEAD-box helicas 100.0 5.4E-30 1.2E-34 228.4 24.3 200 101-304 1-202 (203)
89 COG4098 comFA Superfamily II D 100.0 1.3E-28 2.9E-33 218.5 29.5 305 121-453 97-419 (441)
90 KOG0947 Cytoplasmic exosomal R 100.0 1.8E-29 3.8E-34 249.8 26.3 332 116-469 292-741 (1248)
91 KOG0951 RNA helicase BRR2, DEA 100.0 4.9E-29 1.1E-33 252.4 24.9 345 105-457 295-709 (1674)
92 PRK11448 hsdR type I restricti 100.0 5.2E-28 1.1E-32 257.9 30.2 306 120-438 412-801 (1123)
93 PRK13104 secA preprotein trans 100.0 4.6E-28 9.9E-33 246.1 26.9 311 122-451 83-588 (896)
94 PRK12904 preprotein translocas 100.0 1.4E-27 3.1E-32 242.3 28.4 314 118-451 79-574 (830)
95 COG4581 Superfamily II RNA hel 100.0 2.5E-27 5.4E-32 243.4 27.9 314 118-449 116-536 (1041)
96 KOG0948 Nuclear exosomal RNA h 100.0 2.1E-28 4.6E-33 236.6 18.8 311 117-449 125-538 (1041)
97 PRK12906 secA preprotein trans 100.0 1.2E-27 2.7E-32 241.8 25.0 314 118-451 78-554 (796)
98 PRK12899 secA preprotein trans 100.0 2E-26 4.4E-31 233.7 29.9 145 103-258 66-228 (970)
99 PLN03142 Probable chromatin-re 100.0 3.6E-26 7.8E-31 239.4 29.1 318 121-450 169-599 (1033)
100 KOG0950 DNA polymerase theta/e 99.9 1.5E-26 3.3E-31 230.6 20.7 337 106-456 207-617 (1008)
101 PF00270 DEAD: DEAD/DEAH box h 99.9 2.9E-26 6.3E-31 198.2 19.2 163 123-292 1-168 (169)
102 COG1198 PriA Primosomal protei 99.9 5E-25 1.1E-29 222.0 29.4 312 121-451 198-604 (730)
103 KOG0922 DEAH-box RNA helicase 99.9 2.4E-25 5.1E-30 215.1 25.4 303 122-453 52-393 (674)
104 COG1643 HrpA HrpA-like helicas 99.9 2.5E-25 5.5E-30 227.4 26.9 309 123-453 52-390 (845)
105 COG1203 CRISPR-associated heli 99.9 4.1E-25 8.9E-30 230.0 23.1 322 121-450 195-550 (733)
106 PRK13107 preprotein translocas 99.9 1.3E-24 2.7E-29 220.4 25.4 312 122-452 83-593 (908)
107 TIGR00348 hsdR type I site-spe 99.9 5.7E-23 1.2E-27 211.8 28.9 296 122-437 239-634 (667)
108 TIGR00631 uvrb excinuclease AB 99.9 1E-22 2.2E-27 207.4 30.4 128 332-460 430-563 (655)
109 KOG0923 mRNA splicing factor A 99.9 1.3E-23 2.8E-28 201.3 21.2 300 122-450 266-606 (902)
110 KOG0924 mRNA splicing factor A 99.9 6.9E-23 1.5E-27 196.8 23.9 315 122-470 357-712 (1042)
111 COG4096 HsdR Type I site-speci 99.9 1.9E-23 4.2E-28 206.6 20.7 296 120-437 164-525 (875)
112 KOG0385 Chromatin remodeling c 99.9 8.1E-23 1.7E-27 199.0 24.2 321 121-453 167-602 (971)
113 KOG0920 ATP-dependent RNA heli 99.9 1.3E-22 2.8E-27 206.8 26.4 314 122-452 174-546 (924)
114 PRK05298 excinuclease ABC subu 99.9 8.9E-22 1.9E-26 202.2 29.8 138 332-470 434-586 (652)
115 COG1110 Reverse gyrase [DNA re 99.9 9.3E-22 2E-26 197.7 26.2 286 109-421 70-416 (1187)
116 TIGR01407 dinG_rel DnaQ family 99.9 3.8E-21 8.3E-26 204.5 31.9 331 107-450 232-814 (850)
117 KOG0926 DEAH-box RNA helicase 99.9 6.2E-23 1.3E-27 200.2 15.4 302 128-449 263-703 (1172)
118 COG0556 UvrB Helicase subunit 99.9 4.7E-21 1E-25 180.3 23.0 165 277-450 387-557 (663)
119 KOG4150 Predicted ATP-dependen 99.9 1.1E-21 2.4E-26 185.0 18.7 332 112-453 277-643 (1034)
120 KOG0387 Transcription-coupled 99.9 5.9E-21 1.3E-25 186.9 23.9 320 121-452 205-660 (923)
121 PRK12326 preprotein translocas 99.9 2.2E-20 4.8E-25 185.5 27.2 315 117-451 75-548 (764)
122 COG4889 Predicted helicase [Ge 99.9 3.5E-22 7.6E-27 196.6 12.6 334 98-445 139-583 (1518)
123 PRK13103 secA preprotein trans 99.9 1.8E-20 3.9E-25 190.6 24.2 311 121-451 82-592 (913)
124 KOG0925 mRNA splicing factor A 99.9 1.1E-20 2.3E-25 175.5 19.2 328 98-451 24-388 (699)
125 KOG0384 Chromodomain-helicase 99.9 9.9E-21 2.2E-25 193.1 18.7 321 120-453 369-814 (1373)
126 smart00487 DEXDc DEAD-like hel 99.9 4E-20 8.7E-25 164.2 20.3 182 117-305 4-189 (201)
127 PRK12900 secA preprotein trans 99.9 2.4E-20 5.3E-25 190.3 20.8 123 328-452 581-713 (1025)
128 KOG0949 Predicted helicase, DE 99.9 9.3E-20 2E-24 181.8 23.9 158 121-289 511-674 (1330)
129 KOG1123 RNA polymerase II tran 99.9 2E-20 4.3E-25 174.3 16.6 312 120-457 301-660 (776)
130 KOG0390 DNA repair protein, SN 99.8 2.7E-18 5.9E-23 172.5 26.5 316 121-446 238-701 (776)
131 PRK07246 bifunctional ATP-depe 99.8 4.6E-18 9.9E-23 178.5 27.0 119 342-463 645-798 (820)
132 KOG0392 SNF2 family DNA-depend 99.8 2.6E-18 5.7E-23 175.0 21.8 326 121-452 975-1456(1549)
133 KOG1000 Chromatin remodeling p 99.8 6.9E-18 1.5E-22 157.3 20.9 329 117-462 194-617 (689)
134 PRK08074 bifunctional ATP-depe 99.8 1.3E-16 2.9E-21 170.6 30.3 108 343-450 751-893 (928)
135 KOG0389 SNF2 family DNA-depend 99.8 5.1E-18 1.1E-22 166.4 17.1 322 121-453 399-891 (941)
136 PRK14873 primosome assembly pr 99.8 7E-17 1.5E-21 164.4 25.3 284 142-451 166-540 (665)
137 TIGR03117 cas_csf4 CRISPR-asso 99.8 3.8E-16 8.2E-21 157.0 29.8 105 343-449 469-615 (636)
138 PRK12903 secA preprotein trans 99.8 6.3E-17 1.4E-21 163.3 22.9 311 121-451 78-540 (925)
139 KOG0953 Mitochondrial RNA heli 99.8 7.9E-18 1.7E-22 159.1 15.2 279 139-469 194-492 (700)
140 cd00079 HELICc Helicase superf 99.8 6.9E-18 1.5E-22 139.1 13.0 118 329-446 12-131 (131)
141 PF04851 ResIII: Type III rest 99.8 2.4E-17 5.2E-22 144.4 15.7 149 121-287 3-183 (184)
142 cd00046 DEXDc DEAD-like helica 99.8 5.2E-17 1.1E-21 135.6 16.4 143 137-286 1-144 (144)
143 CHL00122 secA preprotein trans 99.7 3.7E-16 7.9E-21 158.8 23.6 127 118-258 74-209 (870)
144 PF00271 Helicase_C: Helicase 99.7 2.6E-17 5.7E-22 122.0 8.0 72 367-438 7-78 (78)
145 PRK11747 dinG ATP-dependent DN 99.7 4.4E-14 9.5E-19 146.8 31.5 105 343-450 533-674 (697)
146 COG1199 DinG Rad3-related DNA 99.7 8.7E-15 1.9E-19 153.2 26.3 103 344-449 479-616 (654)
147 KOG0386 Chromatin remodeling c 99.7 5.1E-16 1.1E-20 156.2 14.4 317 121-448 394-834 (1157)
148 PRK12902 secA preprotein trans 99.7 2E-14 4.4E-19 146.0 24.8 124 122-258 86-218 (939)
149 KOG0388 SNF2 family DNA-depend 99.6 1.2E-14 2.7E-19 141.0 18.3 123 329-451 1028-1155(1185)
150 PF06862 DUF1253: Protein of u 99.6 3.3E-13 7.2E-18 129.3 26.4 287 171-458 35-423 (442)
151 KOG1002 Nucleotide excision re 99.6 3.2E-14 7E-19 133.0 18.8 108 344-451 638-750 (791)
152 KOG0951 RNA helicase BRR2, DEA 99.6 3.9E-14 8.6E-19 145.4 20.4 308 122-457 1144-1501(1674)
153 KOG0391 SNF2 family DNA-depend 99.6 1.1E-13 2.3E-18 140.9 21.7 122 330-451 1261-1388(1958)
154 smart00490 HELICc helicase sup 99.6 9.3E-15 2E-19 109.5 8.0 79 360-438 3-82 (82)
155 TIGR02562 cas3_yersinia CRISPR 99.6 3.1E-13 6.6E-18 139.6 21.5 308 121-439 408-881 (1110)
156 KOG4439 RNA polymerase II tran 99.5 2.5E-13 5.4E-18 132.2 17.6 120 332-451 732-859 (901)
157 TIGR00604 rad3 DNA repair heli 99.5 3.6E-12 7.8E-17 133.7 27.7 72 119-196 8-83 (705)
158 PRK12901 secA preprotein trans 99.5 6.2E-13 1.3E-17 136.8 21.0 117 333-451 617-742 (1112)
159 COG0610 Type I site-specific r 99.5 2.3E-12 5E-17 137.5 25.6 306 137-460 274-662 (962)
160 PF02399 Herpes_ori_bp: Origin 99.5 3.5E-12 7.6E-17 128.6 22.3 289 138-449 51-387 (824)
161 KOG2340 Uncharacterized conser 99.4 1.1E-11 2.3E-16 117.4 19.9 338 119-457 214-675 (698)
162 PF07652 Flavi_DEAD: Flaviviru 99.4 8.6E-13 1.9E-17 105.5 9.3 135 136-290 4-140 (148)
163 COG0553 HepA Superfamily II DN 99.4 3.4E-11 7.5E-16 131.2 20.5 317 120-445 337-815 (866)
164 PF00176 SNF2_N: SNF2 family N 99.4 8.8E-12 1.9E-16 118.1 13.2 151 125-288 1-174 (299)
165 KOG1015 Transcription regulato 99.3 1.7E-10 3.6E-15 116.1 17.1 115 332-446 1129-1271(1567)
166 PRK15483 type III restriction- 99.2 1E-08 2.2E-13 107.0 26.4 70 393-462 501-580 (986)
167 COG0653 SecA Preprotein transl 99.2 5.2E-10 1.1E-14 113.9 16.1 313 121-451 78-546 (822)
168 smart00489 DEXDc3 DEAD-like he 99.2 3.9E-10 8.4E-15 105.0 13.5 75 119-196 6-84 (289)
169 smart00488 DEXDc2 DEAD-like he 99.2 3.9E-10 8.4E-15 105.0 13.5 75 119-196 6-84 (289)
170 KOG0921 Dosage compensation co 99.1 1.1E-09 2.4E-14 109.9 13.2 310 127-449 384-773 (1282)
171 KOG1016 Predicted DNA helicase 98.8 4.9E-07 1.1E-11 89.9 20.3 105 344-448 719-845 (1387)
172 COG3587 Restriction endonuclea 98.8 5.2E-07 1.1E-11 91.1 19.1 72 392-463 482-566 (985)
173 KOG1133 Helicase of the DEAD s 98.7 1.3E-05 2.8E-10 79.5 26.7 103 344-449 629-779 (821)
174 PF07517 SecA_DEAD: SecA DEAD- 98.7 1.3E-07 2.9E-12 85.6 11.4 126 120-258 76-210 (266)
175 PF13086 AAA_11: AAA domain; P 98.6 1.9E-07 4.2E-12 84.9 10.4 74 121-195 1-75 (236)
176 PF02562 PhoH: PhoH-like prote 98.6 2.8E-07 6E-12 80.2 10.5 147 119-285 2-155 (205)
177 KOG0952 DNA/RNA helicase MER3/ 98.6 1.2E-08 2.6E-13 104.6 2.2 254 124-393 930-1205(1230)
178 TIGR00596 rad1 DNA repair prot 98.6 2.7E-06 5.9E-11 89.1 19.3 68 221-288 7-74 (814)
179 PF13872 AAA_34: P-loop contai 98.6 7.8E-07 1.7E-11 80.9 13.1 168 103-289 25-223 (303)
180 PF13604 AAA_30: AAA domain; P 98.6 4.1E-07 8.9E-12 79.9 9.9 123 121-285 1-130 (196)
181 KOG1802 RNA helicase nonsense 98.4 5.4E-06 1.2E-10 81.6 14.6 82 115-206 404-485 (935)
182 PRK10536 hypothetical protein; 98.4 1.6E-05 3.5E-10 71.2 15.1 145 116-283 54-210 (262)
183 KOG1803 DNA helicase [Replicat 98.3 2.8E-06 6.1E-11 83.1 10.4 66 120-194 184-250 (649)
184 PF13307 Helicase_C_2: Helicas 98.3 1.2E-06 2.6E-11 74.8 6.9 105 343-449 8-149 (167)
185 COG3421 Uncharacterized protei 98.3 1.8E-05 3.8E-10 77.3 14.1 139 141-289 2-168 (812)
186 PF09848 DUF2075: Uncharacteri 98.2 5.4E-06 1.2E-10 80.1 8.9 108 138-272 3-117 (352)
187 PF12340 DUF3638: Protein of u 98.1 3.5E-05 7.7E-10 67.7 11.7 149 100-259 4-186 (229)
188 TIGR01448 recD_rel helicase, p 98.1 4.3E-05 9.3E-10 80.4 14.4 133 113-285 315-452 (720)
189 PRK10875 recD exonuclease V su 98.1 5.7E-05 1.2E-09 77.4 14.8 143 122-285 153-301 (615)
190 TIGR00376 DNA helicase, putati 98.1 2.9E-05 6.4E-10 80.3 12.7 68 120-196 156-224 (637)
191 TIGR01447 recD exodeoxyribonuc 98.1 6.8E-05 1.5E-09 76.6 14.2 142 124-285 148-295 (586)
192 PF13245 AAA_19: Part of AAA d 98.0 3.6E-05 7.8E-10 55.8 7.7 60 129-193 2-62 (76)
193 KOG1001 Helicase-like transcri 98.0 2.9E-05 6.2E-10 79.8 9.6 100 345-444 540-642 (674)
194 PRK13889 conjugal transfer rel 98.0 0.00018 3.8E-09 77.3 15.3 126 117-285 343-470 (988)
195 KOG1132 Helicase of the DEAD s 98.0 7.2E-05 1.6E-09 76.5 11.6 140 118-258 18-260 (945)
196 TIGR02768 TraA_Ti Ti-type conj 97.9 0.00026 5.7E-09 74.8 15.5 122 120-283 351-474 (744)
197 COG1875 NYN ribonuclease and A 97.9 4.4E-05 9.5E-10 70.6 8.0 146 117-283 224-385 (436)
198 PRK13826 Dtr system oriT relax 97.8 0.00074 1.6E-08 73.1 15.6 138 105-285 366-505 (1102)
199 PRK06526 transposase; Provisio 97.7 0.00078 1.7E-08 61.5 12.2 47 243-289 157-204 (254)
200 PRK04296 thymidine kinase; Pro 97.6 0.00027 5.8E-09 61.8 7.8 35 138-181 4-38 (190)
201 PRK08181 transposase; Validate 97.6 0.002 4.3E-08 59.2 13.7 109 133-289 103-212 (269)
202 KOG1805 DNA replication helica 97.5 0.00066 1.4E-08 70.4 10.9 135 105-259 657-810 (1100)
203 PF13401 AAA_22: AAA domain; P 97.5 0.0003 6.4E-09 57.4 6.5 18 136-153 4-21 (131)
204 cd00009 AAA The AAA+ (ATPases 97.5 0.0018 3.9E-08 53.6 11.1 18 136-153 19-36 (151)
205 PF00580 UvrD-helicase: UvrD/R 97.4 0.00038 8.2E-09 66.3 7.7 123 122-255 1-125 (315)
206 smart00492 HELICc3 helicase su 97.4 0.00094 2E-08 54.9 8.7 76 373-448 27-136 (141)
207 TIGR02760 TraI_TIGR conjugativ 97.4 0.015 3.2E-07 68.0 20.3 210 120-366 428-648 (1960)
208 PHA02533 17 large terminase pr 97.3 0.0024 5.2E-08 64.7 12.0 151 119-285 57-209 (534)
209 KOG0989 Replication factor C, 97.3 0.00077 1.7E-08 61.2 6.8 45 241-286 125-169 (346)
210 PRK14974 cell division protein 97.3 0.0061 1.3E-07 57.9 13.2 54 244-297 221-275 (336)
211 PF14617 CMS1: U3-containing 9 97.2 0.0011 2.4E-08 59.6 7.4 86 171-256 124-212 (252)
212 smart00491 HELICc2 helicase su 97.2 0.0016 3.4E-08 53.7 7.7 70 380-449 31-138 (142)
213 PF05970 PIF1: PIF1-like helic 97.2 0.0015 3.2E-08 63.4 8.8 60 121-189 1-66 (364)
214 COG2256 MGS1 ATPase related to 97.1 0.0028 6.2E-08 59.8 9.3 35 247-286 106-140 (436)
215 smart00382 AAA ATPases associa 97.1 0.0016 3.4E-08 53.5 6.9 18 136-153 2-19 (148)
216 PRK06921 hypothetical protein; 97.1 0.011 2.4E-07 54.5 12.8 25 136-161 117-141 (266)
217 PRK12723 flagellar biosynthesi 97.1 0.011 2.5E-07 57.1 13.3 122 137-289 175-300 (388)
218 PF13871 Helicase_C_4: Helicas 97.1 0.0015 3.3E-08 59.5 6.9 57 384-440 52-116 (278)
219 PRK08116 hypothetical protein; 97.1 0.019 4.1E-07 53.1 14.1 44 138-191 116-159 (268)
220 PRK06893 DNA replication initi 97.0 0.0026 5.7E-08 57.4 7.8 46 243-288 89-136 (229)
221 PRK08727 hypothetical protein; 97.0 0.0054 1.2E-07 55.5 9.7 48 243-290 91-140 (233)
222 PRK05642 DNA replication initi 97.0 0.0055 1.2E-07 55.5 9.4 46 243-288 95-141 (234)
223 PRK08084 DNA replication initi 96.9 0.0053 1.1E-07 55.6 9.2 17 137-153 46-62 (235)
224 PRK11054 helD DNA helicase IV; 96.9 0.0068 1.5E-07 63.4 11.1 79 112-197 187-265 (684)
225 TIGR01547 phage_term_2 phage t 96.9 0.0028 6.1E-08 62.5 7.9 146 138-298 3-152 (396)
226 PRK07952 DNA replication prote 96.9 0.021 4.5E-07 51.7 12.7 43 243-285 160-204 (244)
227 PF05496 RuvB_N: Holliday junc 96.9 0.005 1.1E-07 54.0 8.3 16 138-153 52-67 (233)
228 PRK14712 conjugal transfer nic 96.9 0.01 2.2E-07 66.8 12.5 127 120-285 834-967 (1623)
229 PRK11889 flhF flagellar biosyn 96.9 0.04 8.6E-07 52.9 14.7 128 137-298 242-375 (436)
230 KOG0298 DEAD box-containing he 96.9 0.0042 9.1E-08 66.4 8.7 154 136-293 374-557 (1394)
231 PRK12377 putative replication 96.8 0.0077 1.7E-07 54.6 9.4 46 137-192 102-147 (248)
232 PRK13709 conjugal transfer nic 96.8 0.016 3.5E-07 66.1 13.5 127 120-285 966-1099(1747)
233 PRK09183 transposase/IS protei 96.8 0.033 7.3E-07 51.1 13.4 24 133-156 99-122 (259)
234 KOG0383 Predicted helicase [Ge 96.8 5.8E-05 1.3E-09 76.8 -5.3 77 330-406 616-696 (696)
235 TIGR03420 DnaA_homol_Hda DnaA 96.8 0.007 1.5E-07 54.6 8.6 44 245-288 90-134 (226)
236 KOG1131 RNA polymerase II tran 96.7 0.018 3.8E-07 56.1 11.2 70 119-193 14-87 (755)
237 PRK05703 flhF flagellar biosyn 96.7 0.035 7.5E-07 54.8 13.8 59 228-290 286-346 (424)
238 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.018 4E-07 48.1 10.1 53 243-295 93-147 (159)
239 PRK12727 flagellar biosynthesi 96.7 0.085 1.8E-06 52.8 16.3 64 229-297 416-481 (559)
240 PRK08903 DnaA regulatory inact 96.7 0.009 2E-07 53.9 9.1 43 245-288 90-133 (227)
241 PRK14722 flhF flagellar biosyn 96.7 0.014 3.1E-07 56.0 10.5 128 136-297 137-269 (374)
242 PRK06835 DNA replication prote 96.7 0.023 5E-07 53.9 11.7 44 136-189 183-226 (329)
243 cd01124 KaiC KaiC is a circadi 96.7 0.017 3.7E-07 50.2 10.2 48 139-196 2-49 (187)
244 PRK00149 dnaA chromosomal repl 96.6 0.018 3.8E-07 57.8 11.0 46 244-289 210-257 (450)
245 PF13173 AAA_14: AAA domain 96.6 0.027 5.9E-07 45.6 10.2 36 245-283 61-96 (128)
246 PRK12402 replication factor C 96.6 0.016 3.5E-07 55.7 10.4 40 244-284 124-163 (337)
247 COG3973 Superfamily I DNA and 96.6 0.019 4.2E-07 57.1 10.5 92 103-197 186-284 (747)
248 PF00448 SRP54: SRP54-type pro 96.6 0.017 3.7E-07 50.6 9.2 53 244-296 82-135 (196)
249 PLN03025 replication factor C 96.5 0.031 6.7E-07 53.3 11.7 38 244-282 98-135 (319)
250 PF00308 Bac_DnaA: Bacterial d 96.5 0.0086 1.9E-07 53.5 7.4 47 243-289 95-143 (219)
251 cd01120 RecA-like_NTPases RecA 96.5 0.045 9.7E-07 46.1 11.6 39 139-186 2-40 (165)
252 PRK10919 ATP-dependent DNA hel 96.5 0.014 3.1E-07 61.3 9.7 71 121-198 2-72 (672)
253 PRK14087 dnaA chromosomal repl 96.5 0.029 6.3E-07 55.9 11.3 108 137-288 142-251 (450)
254 COG1435 Tdk Thymidine kinase [ 96.4 0.028 6E-07 48.0 9.2 89 138-257 6-94 (201)
255 PF00004 AAA: ATPase family as 96.4 0.03 6.6E-07 45.3 9.3 15 139-153 1-15 (132)
256 TIGR00362 DnaA chromosomal rep 96.4 0.02 4.3E-07 56.6 9.6 23 138-161 138-160 (405)
257 PF03354 Terminase_1: Phage Te 96.4 0.021 4.6E-07 57.6 9.8 70 124-198 1-79 (477)
258 PRK00771 signal recognition pa 96.4 0.086 1.9E-06 52.1 13.7 52 246-297 176-228 (437)
259 KOG2028 ATPase related to the 96.3 0.013 2.7E-07 54.7 7.3 40 244-288 221-260 (554)
260 PHA02544 44 clamp loader, smal 96.3 0.021 4.5E-07 54.4 9.3 41 244-284 99-139 (316)
261 PRK12422 chromosomal replicati 96.3 0.046 1E-06 54.3 11.8 49 243-291 200-250 (445)
262 COG1419 FlhF Flagellar GTP-bin 96.3 0.25 5.3E-06 47.5 15.9 132 136-299 203-337 (407)
263 COG1484 DnaC DNA replication p 96.3 0.032 7E-07 51.0 9.8 50 135-194 104-153 (254)
264 COG0593 DnaA ATPase involved i 96.3 0.024 5.3E-07 54.8 9.1 47 245-291 175-223 (408)
265 PRK14088 dnaA chromosomal repl 96.3 0.046 9.9E-07 54.4 11.4 49 245-293 194-244 (440)
266 PRK05986 cob(I)alamin adenolsy 96.2 0.056 1.2E-06 46.5 10.3 146 135-296 21-168 (191)
267 KOG0991 Replication factor C, 96.2 0.022 4.8E-07 49.8 7.7 42 243-285 111-152 (333)
268 TIGR01074 rep ATP-dependent DN 96.2 0.027 5.9E-07 59.6 10.3 71 121-198 1-71 (664)
269 PRK05707 DNA polymerase III su 96.2 0.015 3.3E-07 55.2 7.5 35 121-155 3-41 (328)
270 TIGR02760 TraI_TIGR conjugativ 96.2 0.041 8.9E-07 64.4 12.1 65 120-189 1018-1084(1960)
271 CHL00181 cbbX CbbX; Provisiona 96.2 0.09 1.9E-06 49.1 12.3 20 136-155 59-78 (287)
272 PRK11331 5-methylcytosine-spec 96.2 0.022 4.8E-07 55.7 8.4 32 122-153 180-211 (459)
273 TIGR01075 uvrD DNA helicase II 96.2 0.021 4.6E-07 60.8 9.0 72 120-198 3-74 (715)
274 TIGR02881 spore_V_K stage V sp 96.1 0.06 1.3E-06 49.7 10.9 17 137-153 43-59 (261)
275 PRK08769 DNA polymerase III su 96.1 0.025 5.4E-07 53.4 8.1 36 120-155 3-45 (319)
276 PRK11773 uvrD DNA-dependent he 96.1 0.028 6E-07 59.9 9.4 72 120-198 8-79 (721)
277 PRK14956 DNA polymerase III su 96.0 0.0082 1.8E-07 59.3 4.8 18 138-155 42-59 (484)
278 PF13177 DNA_pol3_delta2: DNA 96.0 0.031 6.7E-07 47.4 7.7 44 244-288 101-144 (162)
279 PRK00411 cdc6 cell division co 96.0 0.053 1.2E-06 53.4 10.6 24 137-161 56-79 (394)
280 PRK10917 ATP-dependent DNA hel 96.0 0.031 6.7E-07 59.1 9.1 98 325-422 290-394 (681)
281 KOG0733 Nuclear AAA ATPase (VC 96.0 0.072 1.6E-06 53.3 10.8 74 77-153 486-562 (802)
282 PTZ00112 origin recognition co 96.0 0.12 2.5E-06 54.7 12.7 24 139-163 784-807 (1164)
283 PRK06620 hypothetical protein; 96.0 0.026 5.6E-07 50.2 7.3 17 137-153 45-61 (214)
284 PF02572 CobA_CobO_BtuR: ATP:c 96.0 0.17 3.8E-06 42.9 11.7 139 139-295 6-148 (172)
285 PRK14964 DNA polymerase III su 96.0 0.053 1.1E-06 54.2 10.0 20 137-156 36-55 (491)
286 PRK14958 DNA polymerase III su 95.9 0.043 9.3E-07 55.5 9.6 39 244-283 118-156 (509)
287 PRK07764 DNA polymerase III su 95.9 0.041 8.9E-07 58.7 9.7 39 244-283 119-157 (824)
288 PRK14961 DNA polymerase III su 95.9 0.062 1.4E-06 52.2 10.3 39 244-283 118-156 (363)
289 TIGR03015 pepcterm_ATPase puta 95.9 0.075 1.6E-06 49.3 10.5 32 122-153 24-60 (269)
290 PF05621 TniB: Bacterial TniB 95.9 0.038 8.2E-07 51.0 8.2 120 137-285 62-188 (302)
291 TIGR02785 addA_Gpos recombinat 95.9 0.034 7.3E-07 62.7 9.4 124 121-256 1-126 (1232)
292 KOG0344 ATP-dependent RNA heli 95.9 0.31 6.7E-06 48.5 14.7 104 139-256 360-467 (593)
293 PRK04195 replication factor C 95.9 0.045 9.8E-07 55.4 9.4 18 136-153 39-56 (482)
294 PRK14960 DNA polymerase III su 95.8 0.046 9.9E-07 56.1 9.1 39 244-283 117-155 (702)
295 PRK09111 DNA polymerase III su 95.8 0.067 1.4E-06 55.1 10.4 40 243-283 130-169 (598)
296 PRK06731 flhF flagellar biosyn 95.8 0.26 5.7E-06 45.3 13.3 129 135-297 74-208 (270)
297 PRK13341 recombination factor 95.8 0.064 1.4E-06 56.5 10.4 39 245-288 109-147 (725)
298 PRK13342 recombination factor 95.8 0.062 1.3E-06 53.2 9.9 37 245-286 92-128 (413)
299 TIGR00708 cobA cob(I)alamin ad 95.8 0.13 2.9E-06 43.6 10.4 53 243-295 95-149 (173)
300 PRK14086 dnaA chromosomal repl 95.8 0.04 8.8E-07 56.2 8.6 47 243-289 375-423 (617)
301 PRK14873 primosome assembly pr 95.8 0.061 1.3E-06 56.1 10.0 91 328-419 171-265 (665)
302 PRK12323 DNA polymerase III su 95.7 0.1 2.2E-06 53.6 11.0 39 243-285 122-163 (700)
303 PRK13833 conjugal transfer pro 95.7 0.037 8E-07 52.2 7.6 65 112-185 121-186 (323)
304 TIGR03689 pup_AAA proteasome A 95.7 0.029 6.4E-07 56.2 7.1 17 137-153 217-233 (512)
305 PTZ00293 thymidine kinase; Pro 95.7 0.077 1.7E-06 46.5 8.8 37 137-182 5-41 (211)
306 PRK08533 flagellar accessory p 95.7 0.035 7.6E-07 50.0 7.0 53 134-196 22-74 (230)
307 COG1444 Predicted P-loop ATPas 95.7 0.15 3.3E-06 53.0 12.2 146 114-287 207-357 (758)
308 TIGR01073 pcrA ATP-dependent D 95.7 0.048 1E-06 58.3 9.1 72 120-198 3-74 (726)
309 PRK07003 DNA polymerase III su 95.7 0.066 1.4E-06 55.7 9.6 39 244-283 118-156 (830)
310 PRK00440 rfc replication facto 95.6 0.23 5E-06 47.3 13.0 39 244-283 101-139 (319)
311 COG4626 Phage terminase-like p 95.6 0.16 3.4E-06 50.7 11.6 148 119-285 59-224 (546)
312 PRK07471 DNA polymerase III su 95.6 0.057 1.2E-06 52.2 8.6 43 243-286 139-181 (365)
313 PRK05896 DNA polymerase III su 95.6 0.038 8.2E-07 56.3 7.5 39 244-283 118-156 (605)
314 PRK06964 DNA polymerase III su 95.6 0.059 1.3E-06 51.4 8.4 36 122-157 2-42 (342)
315 PRK14957 DNA polymerase III su 95.6 0.083 1.8E-06 53.6 9.9 40 243-283 117-156 (546)
316 PHA03333 putative ATPase subun 95.6 0.14 3E-06 52.5 11.2 70 121-198 169-241 (752)
317 TIGR03877 thermo_KaiC_1 KaiC d 95.6 0.1 2.2E-06 47.3 9.7 52 136-197 21-72 (237)
318 PRK08691 DNA polymerase III su 95.5 0.11 2.3E-06 53.9 10.5 40 243-283 117-156 (709)
319 PHA00729 NTP-binding motif con 95.5 0.1 2.2E-06 46.4 9.0 16 138-153 19-34 (226)
320 PRK06871 DNA polymerase III su 95.5 0.1 2.2E-06 49.4 9.7 36 122-157 3-45 (325)
321 PRK11823 DNA repair protein Ra 95.5 0.14 3E-06 51.1 11.0 91 136-259 80-170 (446)
322 cd01122 GP4d_helicase GP4d_hel 95.5 0.039 8.5E-07 51.2 6.8 57 130-195 24-80 (271)
323 COG4962 CpaF Flp pilus assembl 95.4 0.045 9.7E-07 51.1 6.8 61 119-189 155-216 (355)
324 PRK08939 primosomal protein Dn 95.4 0.15 3.2E-06 48.0 10.4 25 136-161 156-180 (306)
325 TIGR00643 recG ATP-dependent D 95.4 0.059 1.3E-06 56.5 8.5 97 326-422 265-368 (630)
326 COG2255 RuvB Holliday junction 95.4 0.062 1.3E-06 48.7 7.3 17 137-153 53-69 (332)
327 PRK08699 DNA polymerase III su 95.4 0.15 3.2E-06 48.5 10.3 35 122-156 2-41 (325)
328 PRK07414 cob(I)yrinic acid a,c 95.4 0.28 6.2E-06 41.7 10.8 141 139-294 24-166 (178)
329 PRK05580 primosome assembly pr 95.3 0.099 2.2E-06 55.1 9.9 91 329-420 174-267 (679)
330 PRK07940 DNA polymerase III su 95.3 0.17 3.6E-06 49.5 10.7 42 243-285 115-156 (394)
331 PRK14949 DNA polymerase III su 95.3 0.088 1.9E-06 55.9 9.2 38 244-282 118-155 (944)
332 PF05127 Helicase_RecD: Helica 95.3 0.0069 1.5E-07 51.5 1.0 124 140-287 1-124 (177)
333 PRK13894 conjugal transfer ATP 95.3 0.065 1.4E-06 50.7 7.6 66 111-185 124-190 (319)
334 COG2109 BtuR ATP:corrinoid ade 95.3 0.19 4.1E-06 42.7 9.3 142 139-296 31-175 (198)
335 PHA03368 DNA packaging termina 95.3 0.098 2.1E-06 53.4 9.0 129 137-286 255-390 (738)
336 PRK06090 DNA polymerase III su 95.2 0.072 1.6E-06 50.3 7.7 36 121-156 3-45 (319)
337 PRK07133 DNA polymerase III su 95.2 0.05 1.1E-06 56.7 7.1 19 138-156 42-60 (725)
338 TIGR02782 TrbB_P P-type conjug 95.2 0.081 1.8E-06 49.7 8.0 66 111-185 108-174 (299)
339 TIGR02880 cbbX_cfxQ probable R 95.2 0.11 2.3E-06 48.6 8.7 18 136-153 58-75 (284)
340 PRK14952 DNA polymerase III su 95.2 0.14 3E-06 52.6 10.0 40 243-283 116-155 (584)
341 TIGR00595 priA primosomal prot 95.2 0.1 2.2E-06 52.9 9.1 92 327-419 7-101 (505)
342 PRK06645 DNA polymerase III su 95.2 0.08 1.7E-06 53.3 8.2 20 137-156 44-63 (507)
343 PRK14969 DNA polymerase III su 95.1 0.11 2.5E-06 52.9 9.3 40 243-283 117-156 (527)
344 PRK07994 DNA polymerase III su 95.1 0.15 3.2E-06 52.8 10.1 38 244-282 118-155 (647)
345 PRK12724 flagellar biosynthesi 95.1 0.55 1.2E-05 45.9 13.3 54 244-297 298-356 (432)
346 PF05876 Terminase_GpA: Phage 95.1 0.037 8E-07 56.7 5.7 124 120-258 15-147 (557)
347 PF01695 IstB_IS21: IstB-like 95.1 0.04 8.7E-07 47.4 5.1 47 133-189 44-90 (178)
348 TIGR02928 orc1/cdc6 family rep 95.1 0.14 3E-06 49.9 9.5 24 137-161 41-64 (365)
349 PRK12726 flagellar biosynthesi 95.0 0.85 1.8E-05 43.9 14.0 120 136-288 206-329 (407)
350 cd00984 DnaB_C DnaB helicase C 95.0 0.19 4.1E-06 45.8 9.7 40 134-181 11-50 (242)
351 KOG0741 AAA+-type ATPase [Post 95.0 0.28 6E-06 48.4 10.9 51 103-153 493-555 (744)
352 TIGR03600 phage_DnaB phage rep 95.0 0.23 4.9E-06 49.4 10.9 142 134-285 192-353 (421)
353 COG0470 HolB ATPase involved i 95.0 0.12 2.6E-06 49.4 8.7 39 244-283 108-146 (325)
354 KOG0730 AAA+-type ATPase [Post 95.0 0.18 3.9E-06 51.1 9.7 57 94-153 426-485 (693)
355 PF06745 KaiC: KaiC; InterPro 94.9 0.028 6E-07 50.7 3.9 54 135-197 18-71 (226)
356 PRK14723 flhF flagellar biosyn 94.9 0.35 7.6E-06 50.9 12.2 67 227-297 249-317 (767)
357 cd01121 Sms Sms (bacterial rad 94.9 0.28 6.2E-06 47.5 10.8 90 136-258 82-171 (372)
358 PRK14951 DNA polymerase III su 94.8 0.17 3.7E-06 52.2 9.7 18 139-156 41-58 (618)
359 COG2805 PilT Tfp pilus assembl 94.8 0.047 1E-06 49.9 4.9 24 139-163 128-151 (353)
360 COG2909 MalT ATP-dependent tra 94.8 0.11 2.5E-06 54.0 8.3 46 243-288 127-172 (894)
361 TIGR00580 mfd transcription-re 94.8 0.11 2.5E-06 56.3 8.7 98 325-422 480-584 (926)
362 COG1198 PriA Primosomal protei 94.8 0.25 5.4E-06 51.7 10.8 92 325-417 225-319 (730)
363 TIGR00064 ftsY signal recognit 94.8 1.2 2.6E-05 41.2 14.4 54 244-297 153-213 (272)
364 PRK11034 clpA ATP-dependent Cl 94.8 0.26 5.7E-06 52.3 11.1 44 246-289 279-326 (758)
365 PRK14963 DNA polymerase III su 94.8 0.23 5E-06 50.2 10.3 16 139-154 39-54 (504)
366 TIGR02639 ClpA ATP-dependent C 94.8 0.39 8.5E-06 51.3 12.6 17 137-153 204-220 (731)
367 COG1197 Mfd Transcription-repa 94.8 0.4 8.7E-06 52.0 12.3 142 125-276 731-900 (1139)
368 TIGR01425 SRP54_euk signal rec 94.8 0.81 1.8E-05 45.0 13.6 48 138-194 102-151 (429)
369 PRK06904 replicative DNA helic 94.8 0.44 9.5E-06 47.9 12.2 115 136-259 221-348 (472)
370 PRK14959 DNA polymerase III su 94.7 0.12 2.7E-06 53.0 8.3 19 138-156 40-58 (624)
371 TIGR01243 CDC48 AAA family ATP 94.7 0.14 3E-06 54.9 9.1 55 97-153 448-504 (733)
372 TIGR00678 holB DNA polymerase 94.7 0.34 7.4E-06 42.1 10.2 39 243-282 94-132 (188)
373 COG1702 PhoH Phosphate starvat 94.7 0.021 4.6E-07 53.0 2.6 45 119-163 126-170 (348)
374 PHA00350 putative assembly pro 94.7 0.4 8.6E-06 46.5 11.2 23 139-161 4-27 (399)
375 PRK10689 transcription-repair 94.7 0.22 4.8E-06 55.5 10.7 79 173-257 809-891 (1147)
376 KOG0738 AAA+-type ATPase [Post 94.7 0.026 5.6E-07 53.2 3.0 17 137-153 246-262 (491)
377 PRK13851 type IV secretion sys 94.7 0.053 1.1E-06 51.8 5.2 45 132-186 158-202 (344)
378 PRK13900 type IV secretion sys 94.7 0.11 2.4E-06 49.5 7.4 43 133-185 157-199 (332)
379 PRK05973 replicative DNA helic 94.6 0.12 2.5E-06 46.6 7.0 84 103-196 22-114 (237)
380 PRK09112 DNA polymerase III su 94.6 0.28 6E-06 47.2 10.0 42 243-285 139-180 (351)
381 PRK00080 ruvB Holliday junctio 94.6 0.23 5.1E-06 47.5 9.6 18 137-154 52-69 (328)
382 KOG0739 AAA+-type ATPase [Post 94.6 0.48 1E-05 43.4 10.6 114 131-294 156-285 (439)
383 PRK14965 DNA polymerase III su 94.6 0.27 5.8E-06 50.9 10.5 40 243-283 117-156 (576)
384 KOG0741 AAA+-type ATPase [Post 94.6 0.099 2.1E-06 51.4 6.8 57 94-153 211-273 (744)
385 COG1474 CDC6 Cdc6-related prot 94.6 0.17 3.7E-06 48.9 8.5 30 244-274 122-151 (366)
386 PRK06067 flagellar accessory p 94.6 0.18 4E-06 45.6 8.4 51 136-196 25-75 (234)
387 PF03969 AFG1_ATPase: AFG1-lik 94.5 0.74 1.6E-05 44.5 12.7 46 243-289 125-171 (362)
388 PRK06995 flhF flagellar biosyn 94.5 1.3 2.7E-05 44.4 14.6 21 137-157 257-277 (484)
389 COG2804 PulE Type II secretory 94.5 0.059 1.3E-06 53.0 5.2 39 122-161 242-282 (500)
390 KOG1513 Nuclear helicase MOP-3 94.5 0.043 9.2E-07 56.2 4.3 155 120-286 263-454 (1300)
391 COG1219 ClpX ATP-dependent pro 94.5 0.043 9.3E-07 50.4 3.8 26 136-163 97-122 (408)
392 COG3972 Superfamily I DNA and 94.4 0.25 5.4E-06 48.3 8.9 81 108-197 150-230 (660)
393 TIGR00635 ruvB Holliday juncti 94.4 0.21 4.6E-06 47.2 8.7 17 137-153 31-47 (305)
394 TIGR03345 VI_ClpV1 type VI sec 94.4 0.45 9.8E-06 51.5 11.9 28 126-153 192-225 (852)
395 PRK14962 DNA polymerase III su 94.4 0.24 5.1E-06 49.7 9.2 18 138-155 38-55 (472)
396 PF01443 Viral_helicase1: Vira 94.4 0.058 1.3E-06 48.8 4.6 13 139-151 1-13 (234)
397 TIGR03346 chaperone_ClpB ATP-d 94.3 0.37 8.1E-06 52.4 11.4 17 137-153 195-211 (852)
398 PRK08451 DNA polymerase III su 94.3 0.17 3.7E-06 51.2 8.1 40 243-283 115-154 (535)
399 PRK14721 flhF flagellar biosyn 94.3 0.78 1.7E-05 45.0 12.5 20 136-155 191-210 (420)
400 KOG0732 AAA+-type ATPase conta 94.3 0.14 3.1E-06 54.9 7.8 57 96-153 259-316 (1080)
401 TIGR03881 KaiC_arch_4 KaiC dom 94.2 0.53 1.1E-05 42.4 10.6 52 135-196 19-70 (229)
402 PF03266 NTPase_1: NTPase; In 94.2 0.066 1.4E-06 45.6 4.2 24 138-162 1-24 (168)
403 KOG0737 AAA+-type ATPase [Post 94.1 0.18 3.9E-06 47.5 7.2 57 97-153 87-144 (386)
404 PRK14953 DNA polymerase III su 94.1 0.26 5.6E-06 49.7 8.9 17 139-155 41-57 (486)
405 PRK07004 replicative DNA helic 94.0 0.37 7.9E-06 48.3 9.7 140 136-285 213-373 (460)
406 PRK05748 replicative DNA helic 93.9 0.65 1.4E-05 46.6 11.5 140 136-285 203-364 (448)
407 KOG0742 AAA+-type ATPase [Post 93.9 0.16 3.4E-06 48.4 6.4 48 99-153 352-401 (630)
408 PRK10865 protein disaggregatio 93.9 0.3 6.6E-06 53.0 9.6 17 137-153 200-216 (857)
409 COG4098 comFA Superfamily II D 93.8 0.58 1.3E-05 43.6 9.6 82 172-259 304-387 (441)
410 cd03115 SRP The signal recogni 93.8 1.2 2.7E-05 37.9 11.6 53 244-296 81-134 (173)
411 PRK07993 DNA polymerase III su 93.8 0.13 2.8E-06 49.2 5.8 36 121-156 2-44 (334)
412 PF05729 NACHT: NACHT domain 93.7 0.46 1E-05 40.0 8.8 24 138-162 2-25 (166)
413 PRK07399 DNA polymerase III su 93.7 0.34 7.4E-06 45.8 8.5 56 228-286 108-163 (314)
414 PRK14950 DNA polymerase III su 93.7 0.5 1.1E-05 49.1 10.4 18 138-155 40-57 (585)
415 TIGR01243 CDC48 AAA family ATP 93.7 0.45 9.7E-06 51.0 10.3 19 135-153 211-229 (733)
416 PRK08840 replicative DNA helic 93.7 0.91 2E-05 45.5 11.8 117 133-258 214-342 (464)
417 CHL00176 ftsH cell division pr 93.7 0.33 7.2E-06 50.6 9.0 17 137-153 217-233 (638)
418 PRK10416 signal recognition pa 93.6 2.6 5.6E-05 40.0 14.2 55 243-297 194-255 (318)
419 PRK08506 replicative DNA helic 93.6 0.7 1.5E-05 46.6 11.0 113 136-259 192-316 (472)
420 PRK09087 hypothetical protein; 93.6 0.3 6.4E-06 43.9 7.5 41 247-289 89-130 (226)
421 PRK14955 DNA polymerase III su 93.6 0.25 5.4E-06 48.7 7.7 19 138-156 40-58 (397)
422 TIGR01241 FtsH_fam ATP-depende 93.5 0.41 8.9E-06 48.7 9.3 55 96-153 49-105 (495)
423 PRK06647 DNA polymerase III su 93.5 0.56 1.2E-05 48.2 10.2 18 138-155 40-57 (563)
424 TIGR00665 DnaB replicative DNA 93.5 0.74 1.6E-05 46.0 11.0 139 136-285 195-354 (434)
425 CHL00095 clpC Clp protease ATP 93.5 0.45 9.7E-06 51.6 10.0 17 137-153 201-217 (821)
426 COG1221 PspF Transcriptional r 93.5 0.84 1.8E-05 44.3 10.7 21 133-153 98-118 (403)
427 PF03796 DnaB_C: DnaB-like hel 93.4 0.26 5.6E-06 45.4 7.1 139 137-285 20-179 (259)
428 PRK05563 DNA polymerase III su 93.4 0.36 7.9E-06 49.6 8.7 19 138-156 40-58 (559)
429 TIGR03499 FlhF flagellar biosy 93.4 0.43 9.4E-06 44.5 8.5 19 137-155 195-213 (282)
430 TIGR02858 spore_III_AA stage I 93.3 0.44 9.6E-06 43.9 8.3 15 137-151 112-126 (270)
431 PHA03372 DNA packaging termina 93.3 1.3 2.7E-05 45.1 11.7 124 137-285 203-336 (668)
432 TIGR00763 lon ATP-dependent pr 93.2 0.71 1.5E-05 49.7 11.0 17 137-153 348-364 (775)
433 TIGR02688 conserved hypothetic 93.2 0.41 8.9E-06 46.6 8.2 24 131-154 204-227 (449)
434 COG1110 Reverse gyrase [DNA re 93.2 0.2 4.4E-06 53.2 6.4 60 343-402 124-190 (1187)
435 TIGR02525 plasmid_TraJ plasmid 93.2 0.16 3.5E-06 49.1 5.4 26 136-162 149-174 (372)
436 cd03239 ABC_SMC_head The struc 93.2 0.22 4.7E-06 42.9 5.8 42 243-284 114-156 (178)
437 PRK04841 transcriptional regul 93.2 1.2 2.7E-05 49.1 13.2 45 244-288 120-164 (903)
438 TIGR02524 dot_icm_DotB Dot/Icm 93.2 0.14 3.1E-06 49.3 5.1 26 135-161 133-158 (358)
439 cd01128 rho_factor Transcripti 93.2 0.32 6.9E-06 44.3 7.1 19 133-151 13-31 (249)
440 PF03237 Terminase_6: Terminas 93.1 0.99 2.1E-05 43.8 11.2 144 140-301 1-154 (384)
441 PF00265 TK: Thymidine kinase; 93.1 0.12 2.6E-06 44.3 4.0 35 139-182 4-38 (176)
442 cd01129 PulE-GspE PulE/GspE Th 93.1 0.15 3.3E-06 46.9 4.9 39 122-161 64-104 (264)
443 PRK13764 ATPase; Provisional 93.0 0.15 3.2E-06 52.3 5.2 26 135-161 256-281 (602)
444 KOG0058 Peptide exporter, ABC 93.0 0.45 9.7E-06 49.0 8.4 137 135-281 493-658 (716)
445 PRK10867 signal recognition pa 92.9 1.2 2.6E-05 44.0 11.2 20 138-157 102-121 (433)
446 PRK08058 DNA polymerase III su 92.9 0.82 1.8E-05 43.7 9.9 41 243-284 108-148 (329)
447 COG1485 Predicted ATPase [Gene 92.9 2.2 4.7E-05 40.3 12.1 47 243-290 128-175 (367)
448 PRK08006 replicative DNA helic 92.9 1.5 3.2E-05 44.1 12.0 141 136-285 224-385 (471)
449 PRK09376 rho transcription ter 92.9 0.79 1.7E-05 44.3 9.4 20 133-152 166-185 (416)
450 TIGR00767 rho transcription te 92.9 0.69 1.5E-05 44.8 9.1 20 133-152 165-184 (415)
451 cd01126 TraG_VirD4 The TraG/Tr 92.8 0.088 1.9E-06 51.7 3.2 48 138-196 1-48 (384)
452 PRK14948 DNA polymerase III su 92.8 0.18 3.9E-06 52.4 5.6 19 137-155 39-57 (620)
453 TIGR00602 rad24 checkpoint pro 92.8 0.54 1.2E-05 48.8 8.9 16 138-153 112-127 (637)
454 PF06733 DEAD_2: DEAD_2; Inte 92.8 0.077 1.7E-06 45.6 2.4 43 217-259 115-159 (174)
455 PF12846 AAA_10: AAA-like doma 92.7 0.2 4.4E-06 47.1 5.4 42 137-187 2-43 (304)
456 PRK14954 DNA polymerase III su 92.7 0.34 7.5E-06 50.1 7.3 19 138-156 40-58 (620)
457 PHA00012 I assembly protein 92.7 1.4 2.9E-05 41.3 10.3 26 138-163 3-28 (361)
458 KOG0701 dsRNA-specific nucleas 92.7 0.076 1.6E-06 59.5 2.7 93 346-438 294-399 (1606)
459 PRK04328 hypothetical protein; 92.6 0.25 5.4E-06 45.2 5.7 53 135-197 22-74 (249)
460 KOG0733 Nuclear AAA ATPase (VC 92.6 0.32 7E-06 48.9 6.6 17 137-153 224-240 (802)
461 PF02534 T4SS-DNA_transf: Type 92.6 0.14 3.1E-06 51.7 4.5 50 137-197 45-94 (469)
462 TIGR02868 CydC thiol reductant 92.6 0.49 1.1E-05 48.7 8.4 18 134-151 359-376 (529)
463 PRK10436 hypothetical protein; 92.5 0.16 3.6E-06 50.6 4.7 39 122-161 202-242 (462)
464 PRK08760 replicative DNA helic 92.5 0.83 1.8E-05 46.0 9.6 111 137-258 230-352 (476)
465 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.5 0.33 7.2E-06 40.1 5.8 31 243-273 86-116 (144)
466 cd01130 VirB11-like_ATPase Typ 92.4 0.26 5.7E-06 42.8 5.4 38 114-153 4-42 (186)
467 PF00437 T2SE: Type II/IV secr 92.4 0.14 3E-06 47.5 3.8 43 134-185 125-167 (270)
468 PF10412 TrwB_AAD_bind: Type I 92.4 0.23 5.1E-06 48.6 5.5 49 134-191 13-61 (386)
469 KOG0652 26S proteasome regulat 92.3 1.1 2.5E-05 40.1 9.0 17 137-153 206-222 (424)
470 COG1618 Predicted nucleotide k 92.3 0.47 1E-05 39.3 6.1 26 137-163 6-31 (179)
471 COG0630 VirB11 Type IV secreto 92.2 0.38 8.2E-06 45.5 6.4 55 121-185 127-182 (312)
472 PRK14970 DNA polymerase III su 92.1 0.96 2.1E-05 44.1 9.5 18 137-154 40-57 (367)
473 TIGR00959 ffh signal recogniti 92.1 2.4 5.1E-05 42.0 12.0 21 138-158 101-121 (428)
474 PF01637 Arch_ATPase: Archaeal 92.0 0.44 9.6E-06 42.7 6.6 40 247-286 120-165 (234)
475 PLN00020 ribulose bisphosphate 92.0 0.2 4.4E-06 47.7 4.3 16 138-153 150-165 (413)
476 PRK05636 replicative DNA helic 91.9 1.2 2.6E-05 45.2 10.0 111 137-258 266-388 (505)
477 TIGR03743 SXT_TraD conjugative 91.9 0.68 1.5E-05 48.3 8.4 53 137-198 177-231 (634)
478 PRK14971 DNA polymerase III su 91.9 1.3 2.7E-05 46.2 10.3 40 243-283 119-158 (614)
479 TIGR02538 type_IV_pilB type IV 91.9 0.21 4.5E-06 51.6 4.6 39 122-161 300-340 (564)
480 TIGR03345 VI_ClpV1 type VI sec 91.9 0.67 1.4E-05 50.3 8.6 15 139-153 599-613 (852)
481 PRK13897 type IV secretion sys 91.9 0.2 4.4E-06 51.6 4.6 49 137-196 159-207 (606)
482 TIGR02397 dnaX_nterm DNA polym 91.9 0.67 1.4E-05 44.9 8.0 16 138-153 38-53 (355)
483 cd01131 PilT Pilus retraction 91.8 0.28 6.2E-06 43.0 4.9 22 139-161 4-25 (198)
484 TIGR03819 heli_sec_ATPase heli 91.8 0.44 9.4E-06 45.7 6.5 63 111-185 154-217 (340)
485 TIGR02640 gas_vesic_GvpN gas v 91.8 0.16 3.5E-06 46.8 3.4 27 128-154 13-39 (262)
486 TIGR02639 ClpA ATP-dependent C 91.6 0.87 1.9E-05 48.8 9.1 16 138-153 486-501 (731)
487 cd01393 recA_like RecA is a b 91.6 0.55 1.2E-05 42.2 6.7 45 136-183 19-63 (226)
488 TIGR02533 type_II_gspE general 91.5 0.23 5.1E-06 50.0 4.5 39 122-161 226-266 (486)
489 COG1132 MdlB ABC-type multidru 91.4 0.95 2.1E-05 47.0 9.1 41 243-283 481-521 (567)
490 PRK09165 replicative DNA helic 91.3 1.4 3.1E-05 44.6 9.9 121 137-259 218-355 (497)
491 COG0467 RAD55 RecA-superfamily 91.3 0.43 9.2E-06 44.0 5.7 54 135-198 22-75 (260)
492 PF13555 AAA_29: P-loop contai 91.2 0.32 7E-06 33.3 3.6 17 136-152 23-39 (62)
493 TIGR03754 conj_TOL_TraD conjug 91.2 0.93 2E-05 46.9 8.4 54 136-198 180-235 (643)
494 KOG0745 Putative ATP-dependent 91.0 0.28 6.2E-06 47.2 4.2 25 137-163 227-251 (564)
495 COG1200 RecG RecG-like helicas 91.0 1.1 2.3E-05 46.0 8.4 90 333-422 300-395 (677)
496 KOG1513 Nuclear helicase MOP-3 90.9 0.29 6.4E-06 50.4 4.4 62 387-448 851-923 (1300)
497 PRK13700 conjugal transfer pro 90.8 0.34 7.4E-06 50.3 4.8 73 107-190 156-230 (732)
498 PF02367 UPF0079: Uncharacteri 90.7 0.27 5.8E-06 39.2 3.2 43 133-187 12-54 (123)
499 PRK10787 DNA-binding ATP-depen 90.6 4.8 0.0001 43.4 13.3 43 228-273 402-444 (784)
500 COG3267 ExeA Type II secretory 90.6 1.6 3.4E-05 39.3 8.1 22 133-154 47-69 (269)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-69 Score=516.32 Aligned_cols=373 Identities=43% Similarity=0.711 Sum_probs=346.0
Q ss_pred CCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEE
Q 011901 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~l 177 (475)
...|+.++++++....+...|+..|||+|.+.||.++.|+|++..+.||||||++|++|++.++.+.......+++|++|
T Consensus 90 ~~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vL 169 (519)
T KOG0331|consen 90 SAAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVL 169 (519)
T ss_pred chhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEE
Confidence 33789999999999999999999999999999999999999999999999999999999999998755555667899999
Q ss_pred EEcCCHHHHHHHHHHHHhhCCCCc--eEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011901 178 VLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 178 il~Pt~~La~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H 255 (475)
+++|||+||.|+.+.+.++...+. ..|++||.+...+...+.++++|+|+||++|.++++.+.++++++.++|+||||
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD 249 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD 249 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH
Confidence 999999999999999999987665 899999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchHHHHHHHHhC-CCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHH
Q 011901 256 QMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334 (475)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 334 (475)
+|++++|..+++.|+..+ ++..|++++|||+|.+++.++..++.++..+.+...........+.+.....+...|...+
T Consensus 250 rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l 329 (519)
T KOG0331|consen 250 RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKL 329 (519)
T ss_pred hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHH
Confidence 999999999999999999 5566899999999999999999999999999887665666667777887888888999999
Q ss_pred HHHHHHhc--cCCcEEEEecChhhHHHHHHHHHcc-CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCC
Q 011901 335 GQLITEHA--KGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (475)
Q Consensus 335 ~~l~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~ 411 (475)
..+++... .++|+||||.+++.|+++...+.+. +++..+||+.++.+|+.+++.|++|+..|||||+++++|+|||+
T Consensus 330 ~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~d 409 (519)
T KOG0331|consen 330 GKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPD 409 (519)
T ss_pred HHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcc
Confidence 99999885 5679999999999999999999874 89999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccccc
Q 011901 412 VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 412 ~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (475)
|++||+||+|.+.++|+||+||+||.|+.|.+++|++..+......+-+-+......++
T Consensus 410 V~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~ 468 (519)
T KOG0331|consen 410 VDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVP 468 (519)
T ss_pred ccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999888888777755555444
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-66 Score=463.03 Aligned_cols=365 Identities=35% Similarity=0.590 Sum_probs=340.2
Q ss_pred CccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCC
Q 011901 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (475)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 174 (475)
.....+|.++++.+.+.+++...++..||++|+++||.++.|+|++..+.||||||.+|++|++++++.. ...+
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~------p~~~ 130 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE------PKLF 130 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC------CCCc
Confidence 4456789999999999999999999999999999999999999999999999999999999999999873 3358
Q ss_pred eEEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHH-hCCCCCCCccEEEE
Q 011901 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK-RNALNLSEVQFVVL 251 (475)
Q Consensus 175 ~~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~-~~~~~~~~~~~vVi 251 (475)
.++|++|||+||.|+.+.+..++. ++.+.++.||.+...+...+...++|+|+||++|.+++. .+.+.+..++++|+
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhh
Confidence 899999999999999999999876 556778899999999988899999999999999999998 56788999999999
Q ss_pred ecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccch
Q 011901 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (475)
Q Consensus 252 DE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (475)
||||++++++|...+..+++.+|..+|.+++|||++..+..+....+.+|..+.. .......+.+.+++.......|.
T Consensus 211 DEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~--s~ky~tv~~lkQ~ylfv~~k~K~ 288 (476)
T KOG0330|consen 211 DEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAV--SSKYQTVDHLKQTYLFVPGKDKD 288 (476)
T ss_pred chHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEec--cchhcchHHhhhheEeccccccc
Confidence 9999999999999999999999999999999999999999999888888888764 55666777888888888999999
Q ss_pred HHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCC
Q 011901 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (475)
Q Consensus 332 ~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~ 410 (475)
..+..++++. .|+.+||||++...++.++-.|+. ++.+..+||.|+++.|...++.|++|...||||||++++|+|+|
T Consensus 289 ~yLV~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip 367 (476)
T KOG0330|consen 289 TYLVYLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIP 367 (476)
T ss_pred hhHHHHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCC
Confidence 9999999977 568999999999999999999975 58999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccc
Q 011901 411 NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (475)
Q Consensus 411 ~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (475)
.|++|||||.|.+..+|+||+||++|.|.+|.++.+.+..|.+.+..|+..+|++.++
T Consensus 368 ~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 368 HVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred CceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999865
No 3
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.2e-64 Score=429.09 Aligned_cols=365 Identities=34% Similarity=0.597 Sum_probs=334.6
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeE
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 176 (475)
....|+++++.+++++.+.+.||.+|+.+|++|++.|++|+|++.++..|+|||.+|.+.+++.+.- ..+..++
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~------~~r~tQ~ 98 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI------SVRETQA 98 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc------ccceeeE
Confidence 4456889999999999999999999999999999999999999999999999999999988877522 1234789
Q ss_pred EEEcCCHHHHHHHHHHHHhhCCCC--ceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecc
Q 011901 177 LVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (475)
Q Consensus 177 lil~Pt~~La~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~ 254 (475)
+++.||++||.|+.+.+..++... .+....||.+..+..+.++.+.+++.|||++..++++++.+..+.++++|+||+
T Consensus 99 lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEa 178 (400)
T KOG0328|consen 99 LILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEA 178 (400)
T ss_pred EEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccH
Confidence 999999999999999999887644 456678999999999999999999999999999999999999999999999999
Q ss_pred cccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCcc-chHH
Q 011901 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSI 333 (475)
Q Consensus 255 H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 333 (475)
+.|++.+|..++..+++.+|+..|++++|||+|..+..+...|+.+|..+-+ ..+....+.+.++++..+..+ |...
T Consensus 179 DemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilv--krdeltlEgIKqf~v~ve~EewKfdt 256 (400)
T KOG0328|consen 179 DEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILV--KRDELTLEGIKQFFVAVEKEEWKFDT 256 (400)
T ss_pred HHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEE--ecCCCchhhhhhheeeechhhhhHhH
Confidence 9999999999999999999999999999999999999999999999998865 445566677777777666555 8889
Q ss_pred HHHHHHHhccCCcEEEEecChhhHHHHHHHHHcc-CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCC
Q 011901 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (475)
Q Consensus 334 l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~ 412 (475)
++++...+. -.+++|||+++..++.+.+.+.+. +.+.++||+|.+++|+.++.+|++|+.+||++|++.++|+|+|.+
T Consensus 257 LcdLYd~Lt-ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qV 335 (400)
T KOG0328|consen 257 LCDLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQV 335 (400)
T ss_pred HHHHhhhhe-hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCccee
Confidence 998877663 359999999999999999999764 889999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccccc
Q 011901 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 413 ~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (475)
++||+||.|.+.+.|+||+||.||.|++|.++-|...+|.+.++.|++++...+.++|
T Consensus 336 slviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp 393 (400)
T KOG0328|consen 336 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMP 393 (400)
T ss_pred EEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999887
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.5e-62 Score=491.18 Aligned_cols=376 Identities=35% Similarity=0.557 Sum_probs=328.0
Q ss_pred CCCccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCC
Q 011901 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (475)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~ 172 (475)
..+.+..+|+++++++.+++.|.+.|+.+|||+|.++||.+++|+|+++++|||||||++|++|++.++..... ...+.
T Consensus 124 ~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~-~~~~~ 202 (545)
T PTZ00110 124 NVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL-LRYGD 202 (545)
T ss_pred CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-ccCCC
Confidence 45667788999999999999999999999999999999999999999999999999999999999988765321 12345
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (475)
++.+|||+||++||.|+.+.+.++.. ++++.+++|+.+...+...+..+++|+|+||++|.+++.++...++++++||
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lV 282 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLV 282 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEE
Confidence 78999999999999999999998865 4667788999988888888888899999999999999998888899999999
Q ss_pred EecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcC-CCcEEEecCCCccccccCeeEEEEeccCcc
Q 011901 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYE 329 (475)
Q Consensus 251 iDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (475)
+||||++++++|..++..++..+++.+|++++|||++..+..+...++. .+..+.+. .........+.+........+
T Consensus 283 iDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg-~~~l~~~~~i~q~~~~~~~~~ 361 (545)
T PTZ00110 283 LDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVG-SLDLTACHNIKQEVFVVEEHE 361 (545)
T ss_pred eehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEEC-CCccccCCCeeEEEEEEechh
Confidence 9999999999999999999999999999999999999999998888775 45555432 222222334445555555667
Q ss_pred chHHHHHHHHHhc-cCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCC
Q 011901 330 KPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (475)
Q Consensus 330 ~~~~l~~l~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gi 407 (475)
|...+..++.... .+.++||||++++.++.++..|.. ++.+..+||++++++|+.+++.|++|+.+|||||+++++|+
T Consensus 362 k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGI 441 (545)
T PTZ00110 362 KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGL 441 (545)
T ss_pred HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCC
Confidence 7777888887765 678999999999999999999974 58899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccccc
Q 011901 408 DVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 408 di~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (475)
|+|++++||++|+|.+..+|+||+||+||.|+.|.|++|+++++...+..|.+.+...-.++|
T Consensus 442 Di~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp 504 (545)
T PTZ00110 442 DVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVP 504 (545)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999999999999999999888888888766655554
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-62 Score=489.16 Aligned_cols=364 Identities=43% Similarity=0.737 Sum_probs=332.1
Q ss_pred CcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEE
Q 011901 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~li 178 (475)
..|+++++++.+++++.+.||..|||+|.++||.++.|+|++++++||||||++|++|+++.+... . ......+||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~---~-~~~~~~aLi 104 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS---V-ERKYVSALI 104 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc---c-ccCCCceEE
Confidence 568899999999999999999999999999999999999999999999999999999999997532 0 111112999
Q ss_pred EcCCHHHHHHHHHHHHhhCC---CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011901 179 LAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H 255 (475)
++||++||.|+++.+..+.. ++.+.+++||.+...+...+..+++|+|+||+++.+++.++.+.++.+.++|+||||
T Consensus 105 l~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD 184 (513)
T COG0513 105 LAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD 184 (513)
T ss_pred ECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh
Confidence 99999999999999998875 567889999999998888888889999999999999999999999999999999999
Q ss_pred ccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCcc-chHHH
Q 011901 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSII 334 (475)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 334 (475)
+|+++||.+++..++..++.+.|++++|||+++.+..+...++.+|..+.+...........+.++++.....+ |...+
T Consensus 185 rmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L 264 (513)
T COG0513 185 RMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELL 264 (513)
T ss_pred hhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887754444446677888888777665 99999
Q ss_pred HHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCC
Q 011901 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD 413 (475)
Q Consensus 335 ~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~ 413 (475)
..+++....+ ++||||+++..++.++..|.. ++++..+||+|++++|.++++.|++|+.+|||||+++++|+|+|+++
T Consensus 265 ~~ll~~~~~~-~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~ 343 (513)
T COG0513 265 LKLLKDEDEG-RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVS 343 (513)
T ss_pred HHHHhcCCCC-eEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccc
Confidence 9999876444 899999999999999999975 48999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecch-hHHHHHHHHHHhCCCcc
Q 011901 414 LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ-QARQVKSIERDVGCRFT 467 (475)
Q Consensus 414 ~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~-~~~~~~~i~~~~~~~~~ 467 (475)
+||+||.|.+.+.|+||+||+||+|+.|.++.|+++. +...+..|++.++...+
T Consensus 344 ~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 344 HVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred eeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999986 89999999999988755
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-60 Score=471.40 Aligned_cols=369 Identities=36% Similarity=0.583 Sum_probs=321.2
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhc-CCCCCCe
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRGRNPL 175 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~-~~~~~~~ 175 (475)
+..+|+++++++.+++++...|+..|+|+|.++|+.++.|+|+++++|||||||++|++|++..+....... ....+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 345788999999999999999999999999999999999999999999999999999999999887533221 1134689
Q ss_pred EEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEec
Q 011901 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (475)
Q Consensus 176 ~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE 253 (475)
++|++||++||.|+++.+..+.. ++.+..++||.....+...+..+++|+|+||++|.+++..+.+.+++++++|+||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999999999999999887754 5667778888887777777788899999999999999998888899999999999
Q ss_pred ccccccCCchHHHHHHHHhCCC--CCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccch
Q 011901 254 ADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (475)
Q Consensus 254 ~H~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (475)
||++.+++|...+..++..++. ..+.+++|||++..+..+...++.+|..+.+.... .....+..........+|.
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~--~~~~~i~~~~~~~~~~~k~ 243 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ--KTGHRIKEELFYPSNEEKM 243 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC--cCCCceeEEEEeCCHHHHH
Confidence 9999999999999999999874 45679999999999999988888888777653322 2223344444444455666
Q ss_pred HHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCC
Q 011901 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (475)
Q Consensus 332 ~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~ 410 (475)
..+..++... ...++||||++++.++.++..|.+ ++.+..+||+|++++|..+++.|++|+++|||||+++++|+|+|
T Consensus 244 ~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 244 RLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIP 322 (423)
T ss_pred HHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcc
Confidence 7777777654 457999999999999999999964 58999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccc
Q 011901 411 NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (475)
Q Consensus 411 ~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (475)
++++||+||+|.+...|+||+||+||.|+.|.|++|+++.+...+..|++.++..++.
T Consensus 323 ~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~ 380 (423)
T PRK04837 323 AVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPV 380 (423)
T ss_pred ccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999888754
No 7
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.6e-60 Score=470.99 Aligned_cols=366 Identities=36% Similarity=0.633 Sum_probs=320.1
Q ss_pred cccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEE
Q 011901 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil 179 (475)
+|+++++++.+.+.|.+.|+..||++|.++++.++.++|+++++|||||||++|++|++..+.............++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 57789999999999999999999999999999999999999999999999999999999998653322222234689999
Q ss_pred cCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc
Q 011901 180 APTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (475)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~ 257 (475)
+||++||.|+.+.+..+.. ++....++|+.....+...+..+++|+|+||++|.+++....+.++++++||+||+|++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 9999999999999998764 45667788998877777777788999999999999999888888999999999999999
Q ss_pred ccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHH
Q 011901 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337 (475)
Q Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 337 (475)
++++|...+..++..++...|++++|||+++.+..+...++.++..+.+.... .....+..+........+..++..+
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k~~~l~~l 239 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN--TASEQVTQHVHFVDKKRKRELLSQM 239 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc--ccccceeEEEEEcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877653322 2223344444445555566666666
Q ss_pred HHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEE
Q 011901 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLII 416 (475)
Q Consensus 338 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi 416 (475)
+... ...++||||++++.++.+++.|.+ ++.+..+||+|++++|..+++.|++|+++|||||+++++|+|+|++++||
T Consensus 240 ~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI 318 (456)
T PRK10590 240 IGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV 318 (456)
T ss_pred HHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEE
Confidence 6543 446999999999999999999965 58899999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccc
Q 011901 417 HYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (475)
Q Consensus 417 ~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (475)
+|++|.+..+|+||+||+||.|..|.|+++++.++...+..|++.++..++.
T Consensus 319 ~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~ 370 (456)
T PRK10590 319 NYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPR 370 (456)
T ss_pred EeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999988753
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=6e-60 Score=471.71 Aligned_cols=360 Identities=36% Similarity=0.648 Sum_probs=323.6
Q ss_pred CcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEE
Q 011901 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~li 178 (475)
.+|+.+++++.+.+++.+.|+..|||+|.++++.++.|+|+++++|||||||++|++|+++.+.. ...+++++|
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~------~~~~~~~li 77 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV------KRFRVQALV 77 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh------ccCCceEEE
Confidence 35889999999999999999999999999999999999999999999999999999999998743 123568999
Q ss_pred EcCCHHHHHHHHHHHHhhC---CCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011901 179 LAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H 255 (475)
++||++|+.|+.++++.+. +++++..++|+.+...+...+..+++|+|+||++|.+++.++.+.++++++||+||+|
T Consensus 78 l~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad 157 (460)
T PRK11776 78 LCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD 157 (460)
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH
Confidence 9999999999999988764 3677888899998888888888889999999999999999988889999999999999
Q ss_pred ccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHH
Q 011901 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335 (475)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 335 (475)
++.+++|...+..++..+++..|++++|||+++.+..+...++.+|..+.+..... ...+.++.+.....++...+.
T Consensus 158 ~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~---~~~i~~~~~~~~~~~k~~~l~ 234 (460)
T PRK11776 158 RMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHD---LPAIEQRFYEVSPDERLPALQ 234 (460)
T ss_pred HHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCC---CCCeeEEEEEeCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887644322 233555555566666777888
Q ss_pred HHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCE
Q 011901 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (475)
Q Consensus 336 ~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~ 414 (475)
.++... .+.++||||++++.++.+++.|.+ ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++
T Consensus 235 ~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~ 313 (460)
T PRK11776 235 RLLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEA 313 (460)
T ss_pred HHHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCe
Confidence 887655 456899999999999999999975 588999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccc
Q 011901 415 IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (475)
Q Consensus 415 vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (475)
||+++.|.+...|+||+||+||.|+.|.|++++++++...+..|++.++..++.
T Consensus 314 VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 314 VINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred EEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 999999999999999999999999999999999999999999999999887664
No 9
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.5e-59 Score=471.90 Aligned_cols=375 Identities=28% Similarity=0.489 Sum_probs=321.5
Q ss_pred CCCccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhc-CCC
Q 011901 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRG 171 (475)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~-~~~ 171 (475)
..+.+..+|+++++++.+++.|.+.|+..|||+|.++|+.++.|+|+++++|||||||++|++|++.++....... ...
T Consensus 115 ~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~ 194 (518)
T PLN00206 115 AVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQ 194 (518)
T ss_pred CCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccccccc
Confidence 4567788899999999999999999999999999999999999999999999999999999999999886532221 123
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHhhCCC--CceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEE
Q 011901 172 RNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~v 249 (475)
.+++++|++||++||.|+++.++.+... +.+..++||.....+...+..+++|+|+||++|.+++.+....++++++|
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~l 274 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVL 274 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEE
Confidence 5789999999999999999998887654 45677888888777777778889999999999999999888889999999
Q ss_pred EEecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCcc
Q 011901 250 VLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329 (475)
Q Consensus 250 ViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (475)
|+||+|+|++++|...+..++..++ .+|++++|||+++.+..+...+..++..+...... .....+.+.........
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~--~~~~~v~q~~~~~~~~~ 351 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN--RPNKAVKQLAIWVETKQ 351 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC--CCCcceeEEEEeccchh
Confidence 9999999999999999999998884 68999999999999999999988888777653322 22233444444455555
Q ss_pred chHHHHHHHHHhc-cCCcEEEEecChhhHHHHHHHHHc--cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccC
Q 011901 330 KPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406 (475)
Q Consensus 330 ~~~~l~~l~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 406 (475)
+...+..++.... ...++||||+++..++.++..|.. ++.+..+||++++++|..+++.|++|+.+|||||+++++|
T Consensus 352 k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rG 431 (518)
T PLN00206 352 KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRG 431 (518)
T ss_pred HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhcc
Confidence 6666666665443 245899999999999999999964 5788999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccccc
Q 011901 407 LDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 407 idi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (475)
+|+|++++||+||+|.+..+|+||+||+||.|..|.+++|+++++...+..+.+.+...-..+|
T Consensus 432 iDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp 495 (518)
T PLN00206 432 VDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIP 495 (518)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999999999999998888888877765544444
No 10
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=5e-60 Score=436.02 Aligned_cols=361 Identities=31% Similarity=0.521 Sum_probs=330.6
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeE
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 176 (475)
....|+...+++..++++..+||..+|++|..+++.++.|+|+++.+.||||||++|++|+++.+.+..... .++..+
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~--r~~~~v 157 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP--RNGTGV 157 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC--CCCeeE
Confidence 345577899999999999999999999999999999999999999999999999999999999998754433 357789
Q ss_pred EEEcCCHHHHHHHHHHHHhhC---CCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCC-CCCCCccEEEEe
Q 011901 177 LVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-LNLSEVQFVVLD 252 (475)
Q Consensus 177 lil~Pt~~La~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~-~~~~~~~~vViD 252 (475)
+|+||||+||.|++.+++++. +.+.+..+.||.........+..+++|+|+||++|.+++++.. +.+.+++++|+|
T Consensus 158 lIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlD 237 (543)
T KOG0342|consen 158 LIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLD 237 (543)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEee
Confidence 999999999999999888765 3667888999999888888888899999999999999998854 456788999999
Q ss_pred cccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCC-CcEEEecCCCccccccCeeEEEEeccCccch
Q 011901 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (475)
Q Consensus 253 E~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (475)
|||++++.+|...+..+++.++..+|.+++|||.++.+..+....+.. +..+...+.......+.+.+-++......+.
T Consensus 238 EADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f 317 (543)
T KOG0342|consen 238 EADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF 317 (543)
T ss_pred cchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH
Confidence 999999999999999999999999999999999999999999887765 8888887777888888888877777777778
Q ss_pred HHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHcc-CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCC
Q 011901 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (475)
Q Consensus 332 ~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~ 410 (475)
..+..+++++....+++|||+|...+...++.|+.. ++|..+||++++..|..+..+|++.+..|||||+++++|+|+|
T Consensus 318 ~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P 397 (543)
T KOG0342|consen 318 SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIP 397 (543)
T ss_pred HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCC
Confidence 888889998877789999999999999999999853 8999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHH
Q 011901 411 NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459 (475)
Q Consensus 411 ~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~ 459 (475)
+|++||+||+|.++.+|+||+||+||.|+.|.++++..+.+...+..+.
T Consensus 398 ~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 398 DVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred CceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999888
No 11
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-61 Score=421.03 Aligned_cols=373 Identities=31% Similarity=0.584 Sum_probs=342.7
Q ss_pred ccCCCCCccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhc
Q 011901 89 AYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168 (475)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~ 168 (475)
..++.....+.+|+++.+..+++..+.+.|+..|+|+|+++||.++.|+|++..+..|+|||.+|++|++..+..
T Consensus 75 ~t~DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~----- 149 (459)
T KOG0326|consen 75 KTEDVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP----- 149 (459)
T ss_pred cccccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc-----
Confidence 345566778889999999999999999999999999999999999999999999999999999999999998733
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCC--ceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCc
Q 011901 169 GRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246 (475)
Q Consensus 169 ~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~ 246 (475)
....-++++++||++||-|+.+.++++.+.+ .+.+.+||++..+....+.+..+++|+||+++++++..+.-.+++.
T Consensus 150 -~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c 228 (459)
T KOG0326|consen 150 -KKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDC 228 (459)
T ss_pred -cccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhc
Confidence 2345689999999999999999888887654 4566789999998888889999999999999999999988889999
Q ss_pred cEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEecc
Q 011901 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (475)
Q Consensus 247 ~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (475)
.++|+||||.+++..|...+..++..+|+.+|++++|||.|-.+..+...++.+|+.+.+. +.-....+.+|+....
T Consensus 229 ~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM---~eLtl~GvtQyYafV~ 305 (459)
T KOG0326|consen 229 VILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM---EELTLKGVTQYYAFVE 305 (459)
T ss_pred eEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh---hhhhhcchhhheeeec
Confidence 9999999999999999999999999999999999999999999999999999999999763 3345566777888888
Q ss_pred CccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCcccc
Q 011901 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405 (475)
Q Consensus 327 ~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 405 (475)
+.+|.--+..+...+. -.+.+|||++...+|.+++.+.+ ++.|..+|++|-+++|.+++..|++|.++.||||+.+.+
T Consensus 306 e~qKvhCLntLfskLq-INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TR 384 (459)
T KOG0326|consen 306 ERQKVHCLNTLFSKLQ-INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTR 384 (459)
T ss_pred hhhhhhhHHHHHHHhc-ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhc
Confidence 8888888888877763 45999999999999999998875 599999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCcccccC
Q 011901 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVTS 471 (475)
Q Consensus 406 Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (475)
|+|++++++||++|+|++.+.|.||+||.||.|..|.++.+++.+|...+..|++.+|++++++|+
T Consensus 385 GIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~ 450 (459)
T KOG0326|consen 385 GIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPS 450 (459)
T ss_pred ccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999984
No 12
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.8e-59 Score=473.64 Aligned_cols=363 Identities=40% Similarity=0.665 Sum_probs=323.4
Q ss_pred CcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEE
Q 011901 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~li 178 (475)
..|+++++++.++++|.++|+.+|+|+|.++++.++.++++++++|||||||++|++|++..+.. ...++++||
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~------~~~~~~~LI 79 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP------ELKAPQILV 79 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh------ccCCCeEEE
Confidence 35888999999999999999999999999999999999999999999999999999999988743 123678999
Q ss_pred EcCCHHHHHHHHHHHHhhC---CCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011901 179 LAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H 255 (475)
++||++|+.|+++.+..+. +++.+..++|+.....+...+..+++|+|+||++|.+++.++.+.++++++||+||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999887664 4677888899988888877888889999999999999999988889999999999999
Q ss_pred ccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHH
Q 011901 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335 (475)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 335 (475)
.|++++|...+..++..++...|+++||||+++.+..+...++.++..+.+.... .....+.+.+.......|...+.
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~--~~~~~i~q~~~~v~~~~k~~~L~ 237 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV--TTRPDISQSYWTVWGMRKNEALV 237 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc--ccCCceEEEEEEechhhHHHHHH
Confidence 9999999999999999999999999999999999999999999988877654322 22234445555555556777777
Q ss_pred HHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCE
Q 011901 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (475)
Q Consensus 336 ~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~ 414 (475)
.++... ...++||||+++..++.+++.|.+ ++.+..+||+|++.+|+++++.|++|+.+|||||+++++|+|+|++++
T Consensus 238 ~~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~ 316 (629)
T PRK11634 238 RFLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISL 316 (629)
T ss_pred HHHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCE
Confidence 777654 346899999999999999999975 588999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccccc
Q 011901 415 IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 415 vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (475)
||+||.|.+...|+||+||+||.|+.|.|++++++.+...++.|++..+..+++++
T Consensus 317 VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~ 372 (629)
T PRK11634 317 VVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVE 372 (629)
T ss_pred EEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceec
Confidence 99999999999999999999999999999999999999999999999999887754
No 13
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-60 Score=429.97 Aligned_cols=419 Identities=33% Similarity=0.533 Sum_probs=363.8
Q ss_pred ccccCCcccccccccc---CCCCCCCchHhhhhh--hccccccccCC-CCCccCCcccC-CCCCHHHHHHHHHcCCCCCc
Q 011901 51 IKSRFSAGTREFHAIS---RPLDFKSSIAWQHAQ--SAVDDYVAYDD-SSKDEGLDISK-LDISQDIVAALARRGISKLF 123 (475)
Q Consensus 51 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~l~ 123 (475)
.....|+-.+.|..+. ..+...+...|.... ..+++....+. .-++|..+|++ +.-.+++.+.+.+.||.+||
T Consensus 165 kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPt 244 (629)
T KOG0336|consen 165 KWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPT 244 (629)
T ss_pred ccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCC
Confidence 3345566666665433 335555556676542 22333333222 24455666654 56778999999999999999
Q ss_pred HHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh-CCCCce
Q 011901 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES-APSLDT 202 (475)
Q Consensus 124 ~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~-~~~~~~ 202 (475)
|+|.+|||.++.|.|++..+.||+|||++|++|.+.++.......+...++.+|++.||++|+.|+.-+.+++ +.+++.
T Consensus 245 PIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ks 324 (629)
T KOG0336|consen 245 PIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKS 324 (629)
T ss_pred cchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcce
Confidence 9999999999999999999999999999999999999888777777778999999999999999998887665 568889
Q ss_pred EEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEE
Q 011901 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (475)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~ 282 (475)
++++||.+..++...+..+.+|+++||++|.++...+.+++..+.++|+|||++|++++|..++.+++-.+++++|+++.
T Consensus 325 vc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmT 404 (629)
T KOG0336|consen 325 VCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMT 404 (629)
T ss_pred EEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHH
Q 011901 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAH 362 (475)
Q Consensus 283 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~ 362 (475)
|||||+.+..++..|+.+|..+.+ +..+......+.+..+.....+|...+..+++......++||||..+..++.+..
T Consensus 405 SATWP~~VrrLa~sY~Kep~~v~v-GsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSS 483 (629)
T KOG0336|consen 405 SATWPEGVRRLAQSYLKEPMIVYV-GSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSS 483 (629)
T ss_pred cccCchHHHHHHHHhhhCceEEEe-cccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccc
Confidence 999999999999999999988754 3444444455666668888889999999999999999999999999999999988
Q ss_pred HHH-ccCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCC
Q 011901 363 AMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKG 441 (475)
Q Consensus 363 ~L~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g 441 (475)
.|. +++....+||+-.+.+|+..++.|++|+++|||||+++++|+|+|+++||++||+|.+++.|+||+||+||+|+.|
T Consensus 484 d~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G 563 (629)
T KOG0336|consen 484 DFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTG 563 (629)
T ss_pred hhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCc
Confidence 775 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecchhHHHHHHHHHHhCCCccccc
Q 011901 442 SAILIYTDQQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 442 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (475)
.++.+++..|-..+..+-+.++..-.++|
T Consensus 564 ~sis~lt~~D~~~a~eLI~ILe~aeQevP 592 (629)
T KOG0336|consen 564 TSISFLTRNDWSMAEELIQILERAEQEVP 592 (629)
T ss_pred ceEEEEehhhHHHHHHHHHHHHHhhhhCc
Confidence 99999999999988888888877666655
No 14
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.1e-59 Score=435.92 Aligned_cols=366 Identities=37% Similarity=0.606 Sum_probs=328.9
Q ss_pred CCccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhh--h-cCC
Q 011901 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE--K-HGR 170 (475)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~--~-~~~ 170 (475)
.+.+-.+|++.++|.++++.+...|+..|+|+|..++|..+.++|+|..+.||||||++|++|++..+.+... . .+.
T Consensus 240 lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~ 319 (673)
T KOG0333|consen 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENN 319 (673)
T ss_pred CCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhc
Confidence 4567788999999999999999999999999999999999999999999999999999999999999987552 2 234
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccE
Q 011901 171 GRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (475)
..||.+++|+||++|++|+.++-.++.. +++++.+.||....++.-.+..+|+|+|+||++|.+.+.+..+-+++..+
T Consensus 320 ~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qcty 399 (673)
T KOG0333|consen 320 IEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTY 399 (673)
T ss_pred ccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCce
Confidence 5689999999999999999999888765 45678889999988887788899999999999999999998888999999
Q ss_pred EEEecccccccCCchHHHHHHHHhCCCC-------------------------CcEEEEccCCChhHHHHHHhhcCCCcE
Q 011901 249 VVLDEADQMLSVGFAEDVEVILERLPQN-------------------------RQSMMFSATMPPWIRSLTNKYLKNPLT 303 (475)
Q Consensus 249 vViDE~H~~~~~~~~~~~~~i~~~~~~~-------------------------~~~i~~SAT~~~~~~~~~~~~~~~~~~ 303 (475)
||+|||++|.+++|.+++..++..+|.. .|.++||||++|.+..++..|+.+|..
T Consensus 400 vvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~ 479 (673)
T KOG0333|consen 400 VVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVV 479 (673)
T ss_pred EeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeE
Confidence 9999999999999999999999999531 588999999999999999999999999
Q ss_pred EEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHH
Q 011901 304 VDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQR 382 (475)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r 382 (475)
+.+.. .......+.+........++...+..+++.. ...++|||+|+++.++.+++.|.+ +++|..+||+-++++|
T Consensus 480 vtig~--~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQR 556 (673)
T KOG0333|consen 480 VTIGS--AGKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQR 556 (673)
T ss_pred EEecc--CCCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHH
Confidence 88643 3344556677777777777888888888876 346999999999999999999975 5999999999999999
Q ss_pred HHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHh
Q 011901 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV 462 (475)
Q Consensus 383 ~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~ 462 (475)
+.++..|++|..+|||||+++++|||||+|++||+||++.+..+|.||+||+||+|+.|.++.|+++.|...+..|.+.+
T Consensus 557 e~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l 636 (673)
T KOG0333|consen 557 ENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQAL 636 (673)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999977666665554
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.1e-59 Score=468.97 Aligned_cols=367 Identities=34% Similarity=0.591 Sum_probs=316.9
Q ss_pred CcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhh-cCCCCCCeEE
Q 011901 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK-HGRGRNPLCL 177 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~-~~~~~~~~~l 177 (475)
.+|+++++++.+++.|.+.||..|||+|.++|+.++.|+|+++++|||||||++|++|+++.+.+.... .....++++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 468899999999999999999999999999999999999999999999999999999999988653221 1112357899
Q ss_pred EEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhC-CCCCCCccEEEEecc
Q 011901 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEA 254 (475)
Q Consensus 178 il~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-~~~~~~~~~vViDE~ 254 (475)
|++||++|+.|+++.+.++.. ++.+..++|+.....+...+..+++|+|+||++|.+++.+. .+.+..+++|||||+
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 999999999999999998865 45677789998887777777788999999999999998775 466889999999999
Q ss_pred cccccCCchHHHHHHHHhCCC--CCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchH
Q 011901 255 DQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332 (475)
Q Consensus 255 H~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (475)
|++++++|...+..++..++. ..|+++||||++..+..+...++..+..+..... ......+.+........++..
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~--~~~~~~i~q~~~~~~~~~k~~ 246 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETE--TITAARVRQRIYFPADEEKQT 246 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccc--cccccceeEEEEecCHHHHHH
Confidence 999999999999999999986 6899999999999999998888888766644222 122233444444444555666
Q ss_pred HHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCC
Q 011901 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (475)
Q Consensus 333 ~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~ 411 (475)
.+..++... .+.++||||++++.++.+++.|.+ ++.+..+||+|++.+|+++++.|++|+.+|||||+++++|||+|+
T Consensus 247 ~L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~ 325 (572)
T PRK04537 247 LLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDG 325 (572)
T ss_pred HHHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccC
Confidence 666666543 567999999999999999999965 488999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccc
Q 011901 412 VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (475)
Q Consensus 412 ~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (475)
+++||+||.|.+..+|+||+||+||.|+.|.|++|+++.+...+..|++.++.+++.
T Consensus 326 V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~ 382 (572)
T PRK04537 326 VKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPV 382 (572)
T ss_pred CCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCc
Confidence 999999999999999999999999999999999999999999999999999887653
No 16
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-59 Score=427.21 Aligned_cols=354 Identities=34% Similarity=0.591 Sum_probs=316.2
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCH
Q 011901 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 104 ~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
.+|++++++++...||..+||+|..+||.+++++|+.+.++||||||++|++|++..+.+...+.+.. ...++||+|||
T Consensus 11 ~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~-~vgalIIsPTR 89 (567)
T KOG0345|consen 11 PPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG-QVGALIISPTR 89 (567)
T ss_pred CCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc-ceeEEEecCcH
Confidence 34669999999999999999999999999999999999999999999999999999997655444332 34699999999
Q ss_pred HHHHHHHHHHHh---hCCCCceEEEEcCcchhHHHHHhh-cCCcEEEEccHHHHHHHHhCC--CCCCCccEEEEeccccc
Q 011901 184 ELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQM 257 (475)
Q Consensus 184 ~La~q~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~--~~~~~~~~vViDE~H~~ 257 (475)
+|+.|+.+.+.. .++++.+.++.||.+..+....+. .+++|+||||++|.+++.+.. +++.++.++|+||||++
T Consensus 90 ELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrL 169 (567)
T KOG0345|consen 90 ELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRL 169 (567)
T ss_pred HHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhH
Confidence 999999876554 456888999999998888777664 669999999999999998854 44559999999999999
Q ss_pred ccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHH
Q 011901 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337 (475)
Q Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 337 (475)
+++||...++.|+..+|+.+..-++|||....+.++....+.+|..+.+........+..+..++..+...+|...+..+
T Consensus 170 ldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~ 249 (567)
T KOG0345|consen 170 LDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHL 249 (567)
T ss_pred hcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887766666777788889999999999999999
Q ss_pred HHHhccCCcEEEEecChhhHHHHHHHHHc---cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCE
Q 011901 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAK---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (475)
Q Consensus 338 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~ 414 (475)
+... ..++++||++|+..+++....+.. ...+..+||+|++.+|..+++.|.+..-.+|+|||++++|+|||++++
T Consensus 250 L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~ 328 (567)
T KOG0345|consen 250 LNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDL 328 (567)
T ss_pred Hhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceE
Confidence 8875 456999999999999999888754 467889999999999999999999988899999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHH
Q 011901 415 IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459 (475)
Q Consensus 415 vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~ 459 (475)
||++|+|.+++.|.||+||++|.|+.|.+++|..+++..+..-+.
T Consensus 329 VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~ 373 (567)
T KOG0345|consen 329 VVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLR 373 (567)
T ss_pred EEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHH
Confidence 999999999999999999999999999999999997666554443
No 17
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-60 Score=416.92 Aligned_cols=367 Identities=35% Similarity=0.538 Sum_probs=335.4
Q ss_pred CCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEE
Q 011901 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~l 177 (475)
...|+.+++++++.+.+...|+.++||+|..+||.|+.|+|++-++.||||||.+|.+|+++.+.+. ..|..++
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed------P~giFal 79 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED------PYGIFAL 79 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC------CCcceEE
Confidence 4568899999999999999999999999999999999999999999999999999999999998662 3577899
Q ss_pred EEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhC----CCCCCCccEEEE
Q 011901 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN----ALNLSEVQFVVL 251 (475)
Q Consensus 178 il~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~----~~~~~~~~~vVi 251 (475)
++.||++||.|+.+.|.-.+. ++++.+++||...-.+...+...+|++|+||+++.+++..+ .+.+++++++|+
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340|consen 80 VLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred EecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEe
Confidence 999999999999999988765 56788899999988888888899999999999999988765 345889999999
Q ss_pred ecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccch
Q 011901 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (475)
Q Consensus 252 DE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (475)
|||+++++..|.+.+..+.+.+|..+|.+++|||+.+.+..+...-...+.........+.++.+.+.+.++......+.
T Consensus 160 DEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkd 239 (442)
T KOG0340|consen 160 DEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKD 239 (442)
T ss_pred cchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhH
Confidence 99999999999999999999999999999999999998888777666665555555556677778888888889999999
Q ss_pred HHHHHHHHHhcc--CCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCC
Q 011901 332 SIIGQLITEHAK--GGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408 (475)
Q Consensus 332 ~~l~~l~~~~~~--~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid 408 (475)
.++..+++...+ .+.++||+++..+++.++..|+. ++.+..+||.|++.+|-..+.+|+++..+|||||+++++|+|
T Consensus 240 aYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLD 319 (442)
T KOG0340|consen 240 AYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLD 319 (442)
T ss_pred HHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCC
Confidence 999999987655 67899999999999999999976 488999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccccc
Q 011901 409 VPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 409 i~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (475)
||.|+.||++|.|+++.+|+||.||+.|+|+.|.++.++++.|++.+..|+.-+|++.++.+
T Consensus 320 IP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~ 381 (442)
T KOG0340|consen 320 IPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYN 381 (442)
T ss_pred CCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999876
No 18
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-59 Score=434.68 Aligned_cols=375 Identities=30% Similarity=0.513 Sum_probs=337.4
Q ss_pred cCCCCCccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcC
Q 011901 90 YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169 (475)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~ 169 (475)
++.........|.+++++...+++|...+|..+|.+|+++|+..+.|+|++..+.||||||++|++|+++++.. ..+.
T Consensus 60 y~ei~~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r--~kWs 137 (758)
T KOG0343|consen 60 YAEIDSTTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYR--LKWS 137 (758)
T ss_pred HHHhhhhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHH--cCCC
Confidence 33344556667999999999999999999999999999999999999999999999999999999999999965 4555
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCC-CCCCCc
Q 011901 170 RGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-LNLSEV 246 (475)
Q Consensus 170 ~~~~~~~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~-~~~~~~ 246 (475)
...|.-+|||.|||+||.|+++.+.+.+. .+++.++.||.....+...+. ..+|+||||++|+.++.... +...++
T Consensus 138 ~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~l 216 (758)
T KOG0343|consen 138 PTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNL 216 (758)
T ss_pred CCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcc
Confidence 66788899999999999999999998764 677888999998776665554 48999999999999997754 667899
Q ss_pred cEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEecc
Q 011901 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (475)
Q Consensus 247 ~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (475)
.++|+|||++++++||...+..|+..+|+.+|.++||||.+..+..++...+.+|..+.+........+..+.++++...
T Consensus 217 QmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~ 296 (758)
T KOG0343|consen 217 QMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVP 296 (758)
T ss_pred eEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999887766788889999999999
Q ss_pred CccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc---cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCcc
Q 011901 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (475)
Q Consensus 327 ~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 403 (475)
..+|..++..+++.+.+ .+.|||+.+++++..+++.+++ +++...+||.|++..|..+...|...+.-||+||+++
T Consensus 297 l~~Ki~~L~sFI~shlk-~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~ 375 (758)
T KOG0343|consen 297 LEDKIDMLWSFIKSHLK-KKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVA 375 (758)
T ss_pred hhhHHHHHHHHHHhccc-cceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhh
Confidence 99999999999998855 5999999999999999988875 5788999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchh-HHHHHHHHHHhCCCcccc
Q 011901 404 ARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ-ARQVKSIERDVGCRFTQV 469 (475)
Q Consensus 404 ~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ 469 (475)
++|+|+|.|++||++|+|.+..+|+||+||+.|.+..|.|+++.++++ ...+..|++.. +.++++
T Consensus 376 aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i 441 (758)
T KOG0343|consen 376 ARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEI 441 (758)
T ss_pred hccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhh
Confidence 999999999999999999999999999999999999999999999998 55566666553 555443
No 19
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.5e-57 Score=450.22 Aligned_cols=364 Identities=34% Similarity=0.606 Sum_probs=316.5
Q ss_pred cccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEE
Q 011901 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil 179 (475)
+|+++++++.+++.|.+.|+.+|+++|.++++.++.|+|+++++|||||||++|++|+++++...... ...+++++|+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~lil 79 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRILIL 79 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc--CCCCceEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999998763222 2235789999
Q ss_pred cCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc
Q 011901 180 APTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (475)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~ 257 (475)
+||++|+.|+++.+..+.. ++.+..++|+.....+...+..+++|+|+||++|.+++..+.+.+.++++||+||||++
T Consensus 80 ~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 80 TPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM 159 (434)
T ss_pred CCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH
Confidence 9999999999999888764 56677788988887777777788999999999999999988888999999999999999
Q ss_pred ccCCchHHHHHHHHhCCCCCcEEEEccCCCh-hHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEec-cCccchHHHH
Q 011901 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPP-WIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SMYEKPSIIG 335 (475)
Q Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ 335 (475)
++++|...+..+....+...|+++||||++. .+..+...++.++..+..... ......+.++.... ....+...+.
T Consensus 160 l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~~k~~~l~ 237 (434)
T PRK11192 160 LDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS--RRERKKIHQWYYRADDLEHKTALLC 237 (434)
T ss_pred hCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC--cccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999888999999999985 577788888888877755322 22223344443333 3355667777
Q ss_pred HHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCE
Q 011901 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (475)
Q Consensus 336 ~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~ 414 (475)
.+++.. ...++||||++++.++.++..|.. ++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++
T Consensus 238 ~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~ 316 (434)
T PRK11192 238 HLLKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSH 316 (434)
T ss_pred HHHhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCE
Confidence 777643 457999999999999999999975 588999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccc
Q 011901 415 IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (475)
Q Consensus 415 vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (475)
||++|+|.+...|+||+||+||.|..|.++++++..|...+..++++++..+..
T Consensus 317 VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 317 VINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred EEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999988776643
No 20
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-58 Score=427.69 Aligned_cols=358 Identities=34% Similarity=0.555 Sum_probs=319.6
Q ss_pred CCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEE
Q 011901 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~l 177 (475)
..+|.+++|+..+++++...||..|||+|...||..+-|+|++.++.||||||.+|++|+|..++-...+. ...+||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~---~~TRVL 256 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKV---AATRVL 256 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccC---cceeEE
Confidence 34688999999999999999999999999999999999999999999999999999999999987644332 245799
Q ss_pred EEcCCHHHHHHHHHHHHhhC--CCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhC-CCCCCCccEEEEecc
Q 011901 178 VLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEA 254 (475)
Q Consensus 178 il~Pt~~La~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-~~~~~~~~~vViDE~ 254 (475)
|+|||++|+.|++...+++. .++.+.+..||.+...+...+...+||+|+||++|.+++.+. .++++++.++|+|||
T Consensus 257 VL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 257 VLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA 336 (691)
T ss_pred EEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechH
Confidence 99999999999998887764 467888889999999999999999999999999999999774 578999999999999
Q ss_pred cccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEE---EeccCccch
Q 011901 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS---IATSMYEKP 331 (475)
Q Consensus 255 H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 331 (475)
|+|++.+|..++..+++.++.++|.++||||++..+..++..-+..|+.+.+....... ..+.+.+ .......+.
T Consensus 337 DRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a--~~LtQEFiRIR~~re~dRe 414 (691)
T KOG0338|consen 337 DRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTA--PKLTQEFIRIRPKREGDRE 414 (691)
T ss_pred HHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccc--hhhhHHHheeccccccccH
Confidence 99999999999999999999999999999999999999999999999999775443322 2222221 224455677
Q ss_pred HHHHHHHHHhccCCcEEEEecChhhHHHHHHHHH-ccCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCC
Q 011901 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (475)
Q Consensus 332 ~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~ 410 (475)
.++..++..... .+++||+.+.+.|.++.-.|. -+.++.-+||.+++.+|-+.++.|++++++|||||+++++|+||+
T Consensus 415 a~l~~l~~rtf~-~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~ 493 (691)
T KOG0338|consen 415 AMLASLITRTFQ-DRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIE 493 (691)
T ss_pred HHHHHHHHHhcc-cceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCcc
Confidence 888888887764 599999999999999987774 357899999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHH
Q 011901 411 NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERD 461 (475)
Q Consensus 411 ~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~ 461 (475)
++..||||.+|.+...|+||+||+.|+|+.|.++.+..+++...++.|-+.
T Consensus 494 gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 494 GVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred ceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999887
No 21
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.3e-57 Score=451.48 Aligned_cols=372 Identities=32% Similarity=0.566 Sum_probs=318.1
Q ss_pred ccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhc-CCCCCC
Q 011901 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRGRNP 174 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~-~~~~~~ 174 (475)
.....|.++++++.+.++|.+.|+..|+++|.++++.++.|+|++++++||||||++|++|++..+.+..... .....+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3345688899999999999999999999999999999999999999999999999999999999987632211 111257
Q ss_pred eEEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhh-cCCcEEEEccHHHHHHHHhCCCCCCCccEEEE
Q 011901 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (475)
Q Consensus 175 ~~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vVi 251 (475)
++||++||++|+.|+++.++.+.. ++.+..++|+.....+.+.+. ..++|+|+||++|..++.++...++++++||+
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 899999999999999999988764 456677788877666655554 56899999999999999888888999999999
Q ss_pred ecccccccCCchHHHHHHHHhCCC--CCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCcc
Q 011901 252 DEADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329 (475)
Q Consensus 252 DE~H~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (475)
||+|++.+++|...+..++...+. ..|++++|||++.....+...+..++..+.+..... ...............+
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENV--ASDTVEQHVYAVAGSD 321 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcC--CCCcccEEEEEecchh
Confidence 999999999999999999988864 579999999999999999999998887776533321 2223334444445566
Q ss_pred chHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCC
Q 011901 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408 (475)
Q Consensus 330 ~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid 408 (475)
+...+..++... ...++||||++++.++.+++.|.+ ++.+..+||++++++|.++++.|++|+++|||||+++++|+|
T Consensus 322 k~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GID 400 (475)
T PRK01297 322 KYKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIH 400 (475)
T ss_pred HHHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCc
Confidence 777777777654 346999999999999999999965 478899999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCcc-ccc
Q 011901 409 VPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFT-QVT 470 (475)
Q Consensus 409 i~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~ 470 (475)
+|++++||+++.|.+..+|+||+||+||.|+.|.+++|++++|...+..+++.++.+++ +++
T Consensus 401 i~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~ 463 (475)
T PRK01297 401 IDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMP 463 (475)
T ss_pred ccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999874 444
No 22
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=2.1e-57 Score=439.94 Aligned_cols=404 Identities=19% Similarity=0.266 Sum_probs=324.6
Q ss_pred chhhhHHhhhhccc--chhhhhhhhhhhhccCCCCCCCcccccccCCccccccccccCCCCCCCchHhhhhhhccccccc
Q 011901 12 SFLTSKRALTAALT--SVETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVA 89 (475)
Q Consensus 12 ~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (475)
.+..++.+.++.+. -.++.|......+. ++..++|++.+|+|++...+..+++++.|+|++..|.+........
T Consensus 162 ~lrk~i~~aL~~~~~~l~e~lp~~l~~k~~---l~~~~~al~~lH~P~~~~~~~~~~rRL~f~Ell~~ql~l~~~r~~~- 237 (677)
T COG1200 162 TLRKLIQQALEVLPSELEELLPEELLEKYG---LPSLDEALRTLHFPKDEEDLKRARRRLAFEELLALQLSLLLRRAKR- 237 (677)
T ss_pred HHHHHHHHHHHhhhhhccccCCHHHHhhcc---CccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 45556676666644 23445444444433 5567899999999999999999999999999999998754211111
Q ss_pred cCCCCCccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcC------CcEEEEcCCCCchhHHHHHHHHHHHHh
Q 011901 90 YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIK 163 (475)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~------~~~li~~~tGsGKT~~~~~~~l~~l~~ 163 (475)
....+. .++...++.+.+.+..+++||..|++++..|..+ ++.|++|++|||||++++++++..+.+
T Consensus 238 ----~~~~~~---~~~~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~ 310 (677)
T COG1200 238 ----QKRSGI---PLPANGELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA 310 (677)
T ss_pred ----hhccCC---CCCccHHHHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc
Confidence 111121 4566777888888888889999999999999976 579999999999999999999999855
Q ss_pred hhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHh---h-cCCcEEEEccHHHHHHHH
Q 011901 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL---D-YGVDAVVGTPGRVIDLIK 237 (475)
Q Consensus 164 ~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~-~~~~Ilv~T~~~l~~~l~ 237 (475)
|+|+.+++||..||+||++.+.++++ ++++..++|..+.+.+...+ . +..+|+|||+..+.
T Consensus 311 ---------G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ---- 377 (677)
T COG1200 311 ---------GYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ---- 377 (677)
T ss_pred ---------CCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh----
Confidence 99999999999999999999999987 56678888888766654443 3 44999999965555
Q ss_pred hCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCC-CCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCcccccc
Q 011901 238 RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316 (475)
Q Consensus 238 ~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (475)
..+.++++++||+||.|| |+...+..+..... .+++++|||||.|.+..+.....-+-..+.. ....
T Consensus 378 -d~V~F~~LgLVIiDEQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdE------lP~G 445 (677)
T COG1200 378 -DKVEFHNLGLVIIDEQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDE------LPPG 445 (677)
T ss_pred -cceeecceeEEEEecccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhcc------CCCC
Confidence 456699999999999999 99999988888888 7999999999999766666555444444422 2222
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHH--------HHHHHHHc---cCCcccccCCCCHHHHHHH
Q 011901 317 GISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDAD--------RLAHAMAK---SYNCEPLHGDISQSQRERT 385 (475)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~--------~l~~~L~~---~~~~~~~h~~~~~~~r~~~ 385 (475)
..+..........+...+..+.++..+|++++|.||-+++.+ .+++.|.. ++++..+||+|++++++.+
T Consensus 446 RkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~v 525 (677)
T COG1200 446 RKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAV 525 (677)
T ss_pred CCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHH
Confidence 233333344446678888888889999999999999988765 44455543 3568899999999999999
Q ss_pred HHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCC-ChhHHHHhhhccCCCCCCCeEEEEecchh
Q 011901 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (475)
Q Consensus 386 ~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~-~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~ 451 (475)
|.+|++|+.+|||||+++++|||+||++++|++++.+ +.++++|.+||+||++.+++|++++.+..
T Consensus 526 M~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 526 MEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred HHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999999999999999999999999999998 99999999999999999999999999866
No 23
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-56 Score=416.52 Aligned_cols=369 Identities=30% Similarity=0.496 Sum_probs=310.3
Q ss_pred ccCCcccCCCCCHHHHHHHHH-cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCC
Q 011901 96 DEGLDISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 174 (475)
..+..|..+++++.+.+.|+. +++..||.+|.++||.++.|+|++|.++||||||++|++|+++.+.+......+..|+
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 345668899999999999976 7999999999999999999999999999999999999999999999877777778899
Q ss_pred eEEEEcCCHHHHHHHHHHHHhhCCCC---ceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhC-CCCCCCccEEE
Q 011901 175 LCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVV 250 (475)
Q Consensus 175 ~~lil~Pt~~La~q~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-~~~~~~~~~vV 250 (475)
-+|||+|||+||.|+|+.+.++..++ ....+.||...+.+...+..|++|+|+||++|.+++.+. .+.++++.+||
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 99999999999999999999887543 345578898888888889999999999999999999874 57789999999
Q ss_pred EecccccccCCchHHHHHHHHhCCC-------------CCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCcc-----
Q 011901 251 LDEADQMLSVGFAEDVEVILERLPQ-------------NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ----- 312 (475)
Q Consensus 251 iDE~H~~~~~~~~~~~~~i~~~~~~-------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 312 (475)
+||+|++++.||...+..|++.+.. ..|.+++|||+.+.+..++...+.+|..+.......+
T Consensus 293 lDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~ 372 (708)
T KOG0348|consen 293 LDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKD 372 (708)
T ss_pred ecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcch
Confidence 9999999999999999999888721 3577999999999999999999999998872211111
Q ss_pred ------------------ccccCeeEEEEeccCccchHHHHHHHHHh---ccCCcEEEEecChhhHHHHHHHHHc-----
Q 011901 313 ------------------KLADGISLYSIATSMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK----- 366 (475)
Q Consensus 313 ------------------~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~lVf~~~~~~~~~l~~~L~~----- 366 (475)
..++.+.+.+..+...-+.-.+..++... ....++|||+.+.+.++.-+..|..
T Consensus 373 ~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~ 452 (708)
T KOG0348|consen 373 KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSH 452 (708)
T ss_pred hhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcc
Confidence 11122233333334333444444444432 2345899999999999987777743
Q ss_pred ------------------cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHH
Q 011901 367 ------------------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFV 428 (475)
Q Consensus 367 ------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~ 428 (475)
..++.-+||+|++++|..++..|...+..||+|||++++|+|+|+|++||+||+|.+.++|+
T Consensus 453 ~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adyl 532 (708)
T KOG0348|consen 453 LEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYL 532 (708)
T ss_pred cccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHH
Confidence 12456789999999999999999999989999999999999999999999999999999999
Q ss_pred HhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCC
Q 011901 429 HRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGC 464 (475)
Q Consensus 429 Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~ 464 (475)
||+||+.|.|.+|.+++|..+.+.+++..+......
T Consensus 533 HRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~ 568 (708)
T KOG0348|consen 533 HRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIM 568 (708)
T ss_pred HHhhhhhhccCCCceEEEecccHHHHHHHHHhhcch
Confidence 999999999999999999999999988877765543
No 24
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.7e-55 Score=432.89 Aligned_cols=364 Identities=35% Similarity=0.569 Sum_probs=311.3
Q ss_pred CCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEE
Q 011901 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~l 177 (475)
...|+++++++.+.+++.+.|+..|+|+|.++++.++.++++++++|||||||++|++|++..+.. ...+.+++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~------~~~~~~~l 100 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY------DLNACQAL 100 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC------CCCCceEE
Confidence 356788999999999999999999999999999999999999999999999999999999987632 12367899
Q ss_pred EEcCCHHHHHHHHHHHHhhCCC--CceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011901 178 VLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 178 il~Pt~~La~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H 255 (475)
|++|+++|+.|+.+.+...+.. ..+....|+.........+..+++|+|+||+.+.+.+.++...++++++||+||+|
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 9999999999999988887643 34455677777666666777778999999999999998888889999999999999
Q ss_pred ccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccC-ccchHHH
Q 011901 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM-YEKPSII 334 (475)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 334 (475)
++.+.++...+..+++.++++.|++++|||+++....+...++.++..+..... ......+..+...... ..+...+
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 258 (401)
T PTZ00424 181 EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKD--ELTLEGIRQFYVAVEKEEWKFDTL 258 (401)
T ss_pred HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCC--CcccCCceEEEEecChHHHHHHHH
Confidence 999988888899999999999999999999999988888888888776644222 1122333333333322 2244445
Q ss_pred HHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCC
Q 011901 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD 413 (475)
Q Consensus 335 ~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~ 413 (475)
..+.+.. ...+++|||++++.++.+++.|.+ ++.+..+||++++++|..+++.|++|+++|||||+++++|+|+|+++
T Consensus 259 ~~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~ 337 (401)
T PTZ00424 259 CDLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVS 337 (401)
T ss_pred HHHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCC
Confidence 5555443 356899999999999999999975 47899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccccc
Q 011901 414 LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 414 ~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (475)
+||+++.|.+...|.||+||+||.|+.|.|++++++++.+.+..+++.+...+++++
T Consensus 338 ~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 338 LVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred EEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 999999999999999999999999999999999999999999999999999888765
No 25
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-56 Score=417.49 Aligned_cols=370 Identities=36% Similarity=0.622 Sum_probs=317.3
Q ss_pred cccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhc----CCCCCCe
Q 011901 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH----GRGRNPL 175 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~----~~~~~~~ 175 (475)
.|+.-.+.+.+...+...++..|||+|+.++|.+..|++.+.+|+||||||.+|++|++.++.+..... .....|.
T Consensus 75 ~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~ 154 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPR 154 (482)
T ss_pred cccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCc
Confidence 566777888888899999999999999999999999999999999999999999999999998744321 1123589
Q ss_pred EEEEcCCHHHHHHHHHHHHhhC--CCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEec
Q 011901 176 CLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (475)
Q Consensus 176 ~lil~Pt~~La~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE 253 (475)
++|++||++|+.|++++.+++. ..+....++|+.+...+......+++|+|+||++|.++++.+.+.+++++++|+||
T Consensus 155 ~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDE 234 (482)
T KOG0335|consen 155 ALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDE 234 (482)
T ss_pred eEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecc
Confidence 9999999999999999999875 36677889999999999999999999999999999999999999999999999999
Q ss_pred cccccc-CCchHHHHHHHHhCCC----CCcEEEEccCCChhHHHHHHhhcCC-CcEEEecCCCccccccCeeEEEEeccC
Q 011901 254 ADQMLS-VGFAEDVEVILERLPQ----NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSM 327 (475)
Q Consensus 254 ~H~~~~-~~~~~~~~~i~~~~~~----~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (475)
|++|++ ++|..++++++..... ..|.++||||.+..++.++..++.+ ...+.+ .........+.+.......
T Consensus 235 ADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV--~rvg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 235 ADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAV--GRVGSTSENITQKILFVNE 312 (482)
T ss_pred hHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEE--eeeccccccceeEeeeecc
Confidence 999999 9999999999998854 7899999999999999988888876 333332 2223344455555555666
Q ss_pred ccchHHHHHHHHHhc---cCC-----cEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEE
Q 011901 328 YEKPSIIGQLITEHA---KGG-----KCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (475)
Q Consensus 328 ~~~~~~l~~l~~~~~---~~~-----~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 398 (475)
.+|...+..++.... ..+ +++|||.+++.+..+...|.. ++++..+||..++.+|.+.++.|++|+..+||
T Consensus 313 ~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlV 392 (482)
T KOG0335|consen 313 MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLV 392 (482)
T ss_pred hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEE
Confidence 666666666666433 233 899999999999999999975 58999999999999999999999999999999
Q ss_pred ecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCcccccC
Q 011901 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVTS 471 (475)
Q Consensus 399 aT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (475)
||+++++|+|+|+|+|||+||+|.+..+|+||+||+||.|..|.++.|+...+....+.+.+.+.-.-+++|+
T Consensus 393 aT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~ 465 (482)
T KOG0335|consen 393 ATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQ 465 (482)
T ss_pred EehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcH
Confidence 9999999999999999999999999999999999999999999999999988777777766666444444443
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-55 Score=399.65 Aligned_cols=363 Identities=28% Similarity=0.462 Sum_probs=326.0
Q ss_pred CcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEE
Q 011901 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~li 178 (475)
.+|++++|++.+++++.+.||..||-+|..+||.++.|+|++..|.||||||.+|++|+++.+++.........++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 67999999999999999999999999999999999999999999999999999999999999998776656677899999
Q ss_pred EcCCHHHHHHHHHHHHhhC---C-CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCC-CCCCCccEEEEec
Q 011901 179 LAPTRELAKQVEKEFHESA---P-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-LNLSEVQFVVLDE 253 (475)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~-~~~~~~~~vViDE 253 (475)
++||++||+|++..+.++. + .+++.-+..+.+.+.....+...++|+|+||+.+..++..+. ..++.++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 9999999999999887653 2 556666666666666666777889999999999999998887 5688899999999
Q ss_pred ccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHH
Q 011901 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333 (475)
Q Consensus 254 ~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (475)
||.++..||.+.+..+...+|+..|.++||||+.+++..+...++.+|..+.+.... ....+.+.+|.+.+...+|..+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~e-l~~~dqL~Qy~v~cse~DKfll 257 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGE-LPNPDQLTQYQVKCSEEDKFLL 257 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEecccc-CCCcccceEEEEEeccchhHHH
Confidence 999999999999999999999999999999999999999999999999998775543 3467889999999999999999
Q ss_pred HHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecC-----------
Q 011901 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD----------- 401 (475)
Q Consensus 334 l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~----------- 401 (475)
+..+++-..-.+++|||+++++.+-++.-.|.+ +++..++.|.|+..-|..+++.|..|-++++|||+
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 999988665567999999999999999988876 47788999999999999999999999999999999
Q ss_pred ------------------------ccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHH
Q 011901 402 ------------------------VAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457 (475)
Q Consensus 402 ------------------------~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~ 457 (475)
-.++|||+.+|.+|+++|+|.+...|+||+||++|++++|.++.|+.+.+..-...
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKES 417 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhH
Confidence 24589999999999999999999999999999999999999999999988775555
Q ss_pred HHHHh
Q 011901 458 IERDV 462 (475)
Q Consensus 458 i~~~~ 462 (475)
|+..+
T Consensus 418 le~~~ 422 (569)
T KOG0346|consen 418 LESIL 422 (569)
T ss_pred HHHHH
Confidence 55444
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-55 Score=401.10 Aligned_cols=372 Identities=35% Similarity=0.564 Sum_probs=332.7
Q ss_pred CCCCCccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCC
Q 011901 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170 (475)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~ 170 (475)
....+.+...|+.++++..+..++.+..+.+|||+|.+++|..+.|++++-.+.||||||.+|+.|++.++....+.. .
T Consensus 215 g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~-~ 293 (731)
T KOG0339|consen 215 GSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELK-P 293 (731)
T ss_pred cCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhc-C
Confidence 334667788899999999999999999999999999999999999999999999999999999999999998755544 4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccE
Q 011901 171 GRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (475)
+.+|..+|+|||++||.|++.+.+++++ ++.+++++||.+..++...++.++.|+|+||++|++++.-+..++.++.+
T Consensus 294 g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 294 GEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred CCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeE
Confidence 6799999999999999999999999865 67889999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCc
Q 011901 249 VVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328 (475)
Q Consensus 249 vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (475)
+|+||+++|.+.||..+++.|...+++++|.++||||.+..+..++..++.+|+.+... +-.....+..+...+.....
T Consensus 374 LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg-~vgean~dITQ~V~V~~s~~ 452 (731)
T KOG0339|consen 374 LVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQG-EVGEANEDITQTVSVCPSEE 452 (731)
T ss_pred EEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEe-ehhccccchhheeeeccCcH
Confidence 99999999999999999999999999999999999999999999999999999988654 22222223333344445555
Q ss_pred cchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHH-ccCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCC
Q 011901 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (475)
Q Consensus 329 ~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gi 407 (475)
.|...+..-+-+....+++|||+.....++.++..|. +++.+..+||+|.+.+|.+++..|+.+...|+|+|+++.+|+
T Consensus 453 ~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargl 532 (731)
T KOG0339|consen 453 KKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGL 532 (731)
T ss_pred HHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCC
Confidence 5666555555555566799999999999999999996 569999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCC
Q 011901 408 DVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGC 464 (475)
Q Consensus 408 di~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~ 464 (475)
|||.+..||+||.-+++..|.||+||+||.|.+|.++.+++++|.+..-.|-+.++.
T Consensus 533 dI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~ 589 (731)
T KOG0339|consen 533 DIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEG 589 (731)
T ss_pred CccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhh
Confidence 999999999999999999999999999999999999999999999988777777654
No 28
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4.5e-56 Score=397.49 Aligned_cols=366 Identities=31% Similarity=0.565 Sum_probs=311.8
Q ss_pred CCCccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhh--hcCC
Q 011901 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE--KHGR 170 (475)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~--~~~~ 170 (475)
..+.+..+|.++.+|..+++.|+++|+..|||+|.+.+|.+++|+|++-.+-||||||++|.+|++...+...- ....
T Consensus 164 ~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~ 243 (610)
T KOG0341|consen 164 DIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFAR 243 (610)
T ss_pred CCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCcccc
Confidence 34567778999999999999999999999999999999999999999999999999999999998766554332 2234
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhhC--------CCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCC
Q 011901 171 GRNPLCLVLAPTRELAKQVEKEFHESA--------PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242 (475)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~ 242 (475)
+.||..||+||+++||.|.++.+..++ |.++..+..||.+...+......+.+|+|+||++|.+++..+.+.
T Consensus 244 ~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~s 323 (610)
T KOG0341|consen 244 GEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMS 323 (610)
T ss_pred CCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhcc
Confidence 678999999999999999998876653 466777789999999999999999999999999999999999999
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEE
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS 322 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (475)
++-.+++.+|||++|.++||...++.++..+...+|.++||||+|..++.++...+-.|..+.+......+ .+.++...
T Consensus 324 Ld~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAs-ldViQevE 402 (610)
T KOG0341|consen 324 LDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAAS-LDVIQEVE 402 (610)
T ss_pred HHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccc-hhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999864433322 12111111
Q ss_pred EeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHH-HccCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecC
Q 011901 323 IATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401 (475)
Q Consensus 323 ~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L-~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 401 (475)
+ .....|.-.+...+++ ...+++|||..+..++.+.++| -++..++.+||+..+++|...++.|+.|+.+|||||+
T Consensus 403 y-VkqEaKiVylLeCLQK--T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATD 479 (610)
T KOG0341|consen 403 Y-VKQEAKIVYLLECLQK--TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATD 479 (610)
T ss_pred H-HHhhhhhhhHHHHhcc--CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEec
Confidence 1 1222333344444443 2458999999999999999987 4778899999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhH-HHHHHHHHHh
Q 011901 402 VAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA-RQVKSIERDV 462 (475)
Q Consensus 402 ~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~-~~~~~i~~~~ 462 (475)
+++.|+|+|++.|||+||+|..+++|+||+||+||.|+.|.+.+|++.... ..+-.+...+
T Consensus 480 VASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL 541 (610)
T KOG0341|consen 480 VASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLL 541 (610)
T ss_pred chhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997543 3344444443
No 29
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1e-53 Score=440.85 Aligned_cols=413 Identities=18% Similarity=0.257 Sum_probs=306.8
Q ss_pred chhhhHHhhhhccc-chhhhhhhhhhhhccCCCCCCCcccccccCCccccccccccCCCCCCCchHhhhhhhcccccccc
Q 011901 12 SFLTSKRALTAALT-SVETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAY 90 (475)
Q Consensus 12 ~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (475)
.+..++...++... -.|+.|....... .+++...|++.+|||.+.++++.+++++.|+|.+.+|.+..........
T Consensus 162 ~~~~~i~~~l~~~~~~~e~lp~~~~~~~---~l~~~~~al~~iH~P~~~~~~~~a~~rl~~~El~~~q~~~~~~~~~~~~ 238 (681)
T PRK10917 162 TLRKLIKQALELLDALPELLPEELLEKY---GLLSLAEALRAIHFPPSDEDLHPARRRLKFEELFALQLSLLLLRAGRRS 238 (681)
T ss_pred HHHHHHHHHHhhccCCCCCCCHHHHHhc---CCCCHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666532 2345554444443 3788889999999999999999999999999999998764321111111
Q ss_pred CCCCCccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcC------CcEEEEcCCCCchhHHHHHHHHHHHHhh
Q 011901 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKF 164 (475)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~------~~~li~~~tGsGKT~~~~~~~l~~l~~~ 164 (475)
. ... .......+.+.+.+...++||++|+++++.+..+ ++++++|+||||||++|++|++..+.+
T Consensus 239 ---~--~~~---~~~~~~~~~~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~- 309 (681)
T PRK10917 239 ---K--KAG---PLPYDGELLKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA- 309 (681)
T ss_pred ---c--cCC---CCCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-
Confidence 1 111 1223456777777766678999999999999987 479999999999999999999988743
Q ss_pred hhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCC--CceEEEEcCcchhHHHH---Hhh-cCCcEEEEccHHHHHHHHh
Q 011901 165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR---ALD-YGVDAVVGTPGRVIDLIKR 238 (475)
Q Consensus 165 ~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~-~~~~Ilv~T~~~l~~~l~~ 238 (475)
|.++++++||++||.|+++.+++++++ +++.+++|+.+...+.. .+. +.++|+||||+.+.+
T Consensus 310 --------g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~---- 377 (681)
T PRK10917 310 --------GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD---- 377 (681)
T ss_pred --------CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----
Confidence 789999999999999999999998864 67788889887654433 233 359999999987753
Q ss_pred CCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCe
Q 011901 239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI 318 (475)
Q Consensus 239 ~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (475)
.+.++++++||+||+|+ |+......+......+++++|||||.+....+......+...+... ... ...+
T Consensus 378 -~v~~~~l~lvVIDE~Hr-----fg~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~--p~~--r~~i 447 (681)
T PRK10917 378 -DVEFHNLGLVIIDEQHR-----FGVEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDEL--PPG--RKPI 447 (681)
T ss_pred -cchhcccceEEEechhh-----hhHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecC--CCC--CCCc
Confidence 34588999999999999 4555566666666678999999999987655544322222222211 111 1112
Q ss_pred eEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhh--------HHHHHHHHHcc---CCcccccCCCCHHHHHHHHH
Q 011901 319 SLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRD--------ADRLAHAMAKS---YNCEPLHGDISQSQRERTLS 387 (475)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~--------~~~l~~~L~~~---~~~~~~h~~~~~~~r~~~~~ 387 (475)
.... .....+...+..+.+....+++++|||+.+++ ++.+++.|.+. +++..+||+|++++|+.+++
T Consensus 448 ~~~~--~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~ 525 (681)
T PRK10917 448 TTVV--IPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMA 525 (681)
T ss_pred EEEE--eCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHH
Confidence 2222 22233345556666666788999999997543 45566666553 56999999999999999999
Q ss_pred HHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCC-ChhHHHHhhhccCCCCCCCeEEEEec-c---hhHHHHHHHHH
Q 011901 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGSAILIYT-D---QQARQVKSIER 460 (475)
Q Consensus 388 ~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~-~~~~~~Q~~GR~gR~~~~g~~~~~~~-~---~~~~~~~~i~~ 460 (475)
.|++|+.+|||||+++++|+|+|++++||++++|+ +.++|+|++||+||.|.+|+|+++++ + .....+..+++
T Consensus 526 ~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~ 603 (681)
T PRK10917 526 AFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRE 603 (681)
T ss_pred HHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999998 78999999999999999999999995 3 23344555543
No 30
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2e-53 Score=436.25 Aligned_cols=403 Identities=20% Similarity=0.240 Sum_probs=296.8
Q ss_pred ccchhhhHHhhhhcccc--hhhhhhhhhhhhccCCCCCCCcccccccCCccccccccccCCCCCCCchHhhhhhhccccc
Q 011901 10 SSSFLTSKRALTAALTS--VETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDY 87 (475)
Q Consensus 10 ~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (475)
++.+..++.+.++.... .|+.|....... .+++...|++.+|+|.+.+.++.+++++.|+|++.+|.........
T Consensus 132 ~~~~~~~i~~~l~~~~~~~~e~lp~~~~~~~---~l~~~~~al~~iH~P~~~~~~~~a~~rl~~~E~~~~ql~l~~~~~~ 208 (630)
T TIGR00643 132 QKKLRKLIQQALDQLDKSLEDPLPEELREKY---GLLSLEDALRAIHFPKTLSLLELARRRLIFDEFFYLQLAMLARRLG 208 (630)
T ss_pred HHHHHHHHHHHHHhccccCCCCCCHHHHhhc---CCCCHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888876432 356665554443 3788889999999999999999999999999999998764321111
Q ss_pred cccCCCCCccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcC------CcEEEEcCCCCchhHHHHHHHHHHH
Q 011901 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~------~~~li~~~tGsGKT~~~~~~~l~~l 161 (475)
.. ....+. .+.........+.+...++||+.|+++++.+..+ ++++++|+||||||++|+++++..+
T Consensus 209 ~~----~~~~~~---~~~~~~~~~~~~~~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~ 281 (630)
T TIGR00643 209 EK----QQFSAP---PANPSEELLTKFLASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAI 281 (630)
T ss_pred HH----hhcCCC---CCCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHH
Confidence 00 000111 1233345555554444458999999999999976 3689999999999999999999887
Q ss_pred HhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHH---h-hcCCcEEEEccHHHHHH
Q 011901 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRA---L-DYGVDAVVGTPGRVIDL 235 (475)
Q Consensus 162 ~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~-~~~~~Ilv~T~~~l~~~ 235 (475)
.+ +.++++++||++||.|+++.++++++ ++++.+++|+.....+... + .+.++|+||||+.+.+
T Consensus 282 ~~---------g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~- 351 (630)
T TIGR00643 282 EA---------GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE- 351 (630)
T ss_pred Hc---------CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-
Confidence 43 78899999999999999999999886 4778888898876654332 2 2458999999987753
Q ss_pred HHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCC---CCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCcc
Q 011901 236 IKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ---NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312 (475)
Q Consensus 236 l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (475)
...+.++++||+||+|++ +......+..... .+++++|||||.+....+......+...+..... .
T Consensus 352 ----~~~~~~l~lvVIDEaH~f-----g~~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~--~ 420 (630)
T TIGR00643 352 ----KVEFKRLALVIIDEQHRF-----GVEQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPP--G 420 (630)
T ss_pred ----cccccccceEEEechhhc-----cHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCC--C
Confidence 345789999999999994 3333333333333 6899999999988655443322112111111110 0
Q ss_pred ccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChh--------hHHHHHHHHHc---cCCcccccCCCCHHH
Q 011901 313 KLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKR--------DADRLAHAMAK---SYNCEPLHGDISQSQ 381 (475)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~--------~~~~l~~~L~~---~~~~~~~h~~~~~~~ 381 (475)
...+..+. .....+...+..+.+....+.+++|||+..+ .++.+++.|.+ ++++..+||+|++++
T Consensus 421 --r~~i~~~~--~~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~e 496 (630)
T TIGR00643 421 --RKPITTVL--IKHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDE 496 (630)
T ss_pred --CCceEEEE--eCcchHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHH
Confidence 11122222 2222334555556666667889999999874 35566666654 467899999999999
Q ss_pred HHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCC-ChhHHHHhhhccCCCCCCCeEEEEe
Q 011901 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGSAILIY 447 (475)
Q Consensus 382 r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~-~~~~~~Q~~GR~gR~~~~g~~~~~~ 447 (475)
|+.+++.|++|+.+|||||+++++|+|+|++++||++++|+ +.++|+|++||+||.|++|.|++++
T Consensus 497 R~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 497 KEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred HHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999997 7899999999999999999999999
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=6.4e-52 Score=429.00 Aligned_cols=348 Identities=22% Similarity=0.325 Sum_probs=275.4
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHH
Q 011901 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (475)
Q Consensus 105 ~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 184 (475)
.+++.+.++|.+.|+.+|+++|.++++.++.|+|+++++|||||||++|++|+++.+.+ ..+.++||++||++
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------~~~~~aL~l~Ptra 92 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------DPRATALYLAPTKA 92 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-------CCCcEEEEEcChHH
Confidence 47899999999999999999999999999999999999999999999999999999865 23678999999999
Q ss_pred HHHHHHHHHHhhCC-CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhC----CCCCCCccEEEEeccccccc
Q 011901 185 LAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN----ALNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 185 La~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~----~~~~~~~~~vViDE~H~~~~ 259 (475)
|+.|+++.++++.. ++++....|+.+ ..+...+..+++|+|+||++|...+... ...++++++||+||+|.|.+
T Consensus 93 La~q~~~~l~~l~~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 93 LAADQLRAVRELTLRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHHhccCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 99999999998852 455655556555 4444555667999999999997544321 12378999999999999987
Q ss_pred CCchHHHHHHHHhC-------CCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEecc------
Q 011901 260 VGFAEDVEVILERL-------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS------ 326 (475)
Q Consensus 260 ~~~~~~~~~i~~~~-------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 326 (475)
. |+..+..+++++ +.++|++++|||+++... ....+++.+..+. .. +...............
T Consensus 172 ~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i--~~-~~~~~~~~~~~~~~p~~~~~~~ 246 (742)
T TIGR03817 172 V-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV--TE-DGSPRGARTVALWEPPLTELTG 246 (742)
T ss_pred c-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE--CC-CCCCcCceEEEEecCCcccccc
Confidence 5 777766665554 467899999999998755 5666666664432 11 1111111111111110
Q ss_pred ----------CccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc---------cCCcccccCCCCHHHHHHHHH
Q 011901 327 ----------MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK---------SYNCEPLHGDISQSQRERTLS 387 (475)
Q Consensus 327 ----------~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~---------~~~~~~~h~~~~~~~r~~~~~ 387 (475)
..++...+..+++ .+.++||||++++.++.++..|.+ +.++..+||++++++|+++++
T Consensus 247 ~~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~ 323 (742)
T TIGR03817 247 ENGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELER 323 (742)
T ss_pred ccccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHH
Confidence 1123334444443 567999999999999999988764 356889999999999999999
Q ss_pred HHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecc--hhHHHHHHHHHHhCCC
Q 011901 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD--QQARQVKSIERDVGCR 465 (475)
Q Consensus 388 ~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~--~~~~~~~~i~~~~~~~ 465 (475)
.|++|++++||||+++++|||+|++++||+++.|.+...|+||+||+||.|+.|.++++.+. .|...+..+++.++..
T Consensus 324 ~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~ 403 (742)
T TIGR03817 324 ALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRP 403 (742)
T ss_pred HHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999873 4555677778888877
Q ss_pred ccc
Q 011901 466 FTQ 468 (475)
Q Consensus 466 ~~~ 468 (475)
++.
T Consensus 404 ~e~ 406 (742)
T TIGR03817 404 VEA 406 (742)
T ss_pred Ccc
Confidence 765
No 32
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-54 Score=401.27 Aligned_cols=371 Identities=35% Similarity=0.564 Sum_probs=305.1
Q ss_pred CcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcC-CcEEEEcCCCCchhHHHHHHHHHHHHhhhhh-------cCC
Q 011901 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEK-------HGR 170 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~-------~~~ 170 (475)
-.|..+++|.+++++|.+.||..||++|..++|++..| .|++..|.||||||++|.+|++..+...... ...
T Consensus 181 sAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k 260 (731)
T KOG0347|consen 181 SAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAK 260 (731)
T ss_pred HHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhc
Confidence 34778999999999999999999999999999999999 7999999999999999999999955431111 111
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhhC--CCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCC---CCCC
Q 011901 171 GRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL---NLSE 245 (475)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~---~~~~ 245 (475)
+..+.+||++|||+||.|+.+-+.... +++++..++||.....+.+.+...++|+|+||++|+.++..+.. ++++
T Consensus 261 ~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 261 YVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred cCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 223349999999999999999887765 47788889999999999999999999999999999999988664 5778
Q ss_pred ccEEEEecccccccCCchHHHHHHHHhCC-----CCCcEEEEccCCChh---------------------HHHHHHh--h
Q 011901 246 VQFVVLDEADQMLSVGFAEDVEVILERLP-----QNRQSMMFSATMPPW---------------------IRSLTNK--Y 297 (475)
Q Consensus 246 ~~~vViDE~H~~~~~~~~~~~~~i~~~~~-----~~~~~i~~SAT~~~~---------------------~~~~~~~--~ 297 (475)
++++|+||+|||...|+...+..+++.+. ..+|.+++|||++-. ++.+... +
T Consensus 341 vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~ 420 (731)
T KOG0347|consen 341 VKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGF 420 (731)
T ss_pred ceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCc
Confidence 99999999999999999999999988875 357999999998421 1222222 2
Q ss_pred cCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHcc-CCcccccCC
Q 011901 298 LKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGD 376 (475)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~h~~ 376 (475)
.+.|..+.+. ....+...+....+.+...+|+-.+..++.. ..|++|||||+++.+.++.-.|+.- ++...+|..
T Consensus 421 ~~kpkiiD~t--~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~r--yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~ 496 (731)
T KOG0347|consen 421 RGKPKIIDLT--PQSATASTLTESLIECPPLEKDLYLYYFLTR--YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHAS 496 (731)
T ss_pred cCCCeeEecC--cchhHHHHHHHHhhcCCccccceeEEEEEee--cCCceEEEechHHHHHHHHHHHhhcCCCCchhhHH
Confidence 3345444432 2222333333334445555565555555544 4579999999999999999999753 777889999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHH
Q 011901 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456 (475)
Q Consensus 377 ~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~ 456 (475)
|.+.+|-+.++.|++....|||||+++++|+|||+|.|||||-.|++.+.|+||.||+.|+++.|..+.++.+.+...+.
T Consensus 497 M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~ 576 (731)
T KOG0347|consen 497 MIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLK 576 (731)
T ss_pred HHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcccccCCCC
Q 011901 457 SIERDVGCRFTQVTSFSF 474 (475)
Q Consensus 457 ~i~~~~~~~~~~~~~~~~ 474 (475)
.|++-+....+ +|-|++
T Consensus 577 KL~ktL~k~~d-lpifPv 593 (731)
T KOG0347|consen 577 KLCKTLKKKED-LPIFPV 593 (731)
T ss_pred HHHHHHhhccC-CCceec
Confidence 99999987765 455554
No 33
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-52 Score=417.13 Aligned_cols=376 Identities=37% Similarity=0.626 Sum_probs=335.6
Q ss_pred CCCCccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCC
Q 011901 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171 (475)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~ 171 (475)
...+.+...|.+.+++..++..+++.|+.+++|+|.+|||+|+.|+++|.+|.||||||++|++|++.++...+.. ..+
T Consensus 358 ~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~-~~g 436 (997)
T KOG0334|consen 358 KECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPL-EEG 436 (997)
T ss_pred CCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCCh-hhC
Confidence 3466788889999999999999999999999999999999999999999999999999999999999877653333 345
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCC---CCCCc
Q 011901 172 RNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL---NLSEV 246 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~---~~~~~ 246 (475)
.||.++||+||++|+.|+++++.++.. ++.+++++|+.....+...++.++.|+||||+++++++-.+.- ++.+.
T Consensus 437 dGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~ 516 (997)
T KOG0334|consen 437 DGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRV 516 (997)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccccccc
Confidence 699999999999999999999988764 6778999999999999999999999999999999998865543 35555
Q ss_pred cEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEecc
Q 011901 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (475)
Q Consensus 247 ~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (475)
.++|+||+|+|.+++|.++...|++.+++.+|.+++|||.+..+..++...+..|..+.+. ....+...+.+......
T Consensus 517 t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~--~~svV~k~V~q~v~V~~ 594 (997)
T KOG0334|consen 517 TYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG--GRSVVCKEVTQVVRVCA 594 (997)
T ss_pred ceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc--cceeEeccceEEEEEec
Confidence 5999999999999999999999999999999999999999999999999999988886553 33344555555544444
Q ss_pred -CccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccc
Q 011901 327 -MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404 (475)
Q Consensus 327 -~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 404 (475)
..+|...+..++.+....++++|||...+.|+.+...|.+ ++.|..+||+.++.+|...+++|++|.+.+||||++++
T Consensus 595 ~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvva 674 (997)
T KOG0334|consen 595 IENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVA 674 (997)
T ss_pred CchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhh
Confidence 8889999999999998899999999999999999998864 58999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccccc
Q 011901 405 RGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 405 ~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (475)
+|+|++.+..||+||+|....+|+||.||+||+|+.|.|++|.++++.+....|.+.++..-.+.|
T Consensus 675 rGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P 740 (997)
T KOG0334|consen 675 RGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVP 740 (997)
T ss_pred cccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999855544443
No 34
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-52 Score=375.36 Aligned_cols=362 Identities=33% Similarity=0.593 Sum_probs=326.6
Q ss_pred CcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEE
Q 011901 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~li 178 (475)
.+|++++|++++++.+...||.+|+.+|++|+..+..|.|+.+++.+|+|||.+|.+++++.+.- .....++++
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~------~~ke~qali 99 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM------SVKETQALI 99 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc------chHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999988722 123567999
Q ss_pred EcCCHHHHHHHHHHHHhhCCCC--ceEEEEcCcchhHH-HHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011901 179 LAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQ-MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H 255 (475)
++|+++||.|..+....++... .+..+.||.....+ .......++|+++||+++.+.++...+..+.+++.|+||++
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 9999999999998887776544 45556777766644 34445568999999999999999998888889999999999
Q ss_pred ccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHH
Q 011901 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335 (475)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 335 (475)
.|+..+|.+++..+++.++++.|++++|||.++++......++.+|..+....+ ......+.++++.....+|...++
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~--~ltl~gikq~~i~v~k~~k~~~l~ 257 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKD--ELTLEGIKQFYINVEKEEKLDTLC 257 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecch--hhhhhheeeeeeeccccccccHHH
Confidence 999999999999999999999999999999999999999999999999876433 355677788888887778999998
Q ss_pred HHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCE
Q 011901 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (475)
Q Consensus 336 ~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~ 414 (475)
.+.. .-.+.+|||++.+.+..+...|.. ++.+..+||+|.+.+|..++..|+.|..+|||.|+.+++|+|+..+..
T Consensus 258 dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~sl 334 (397)
T KOG0327|consen 258 DLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSL 334 (397)
T ss_pred HHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcce
Confidence 8888 446899999999999999999954 488999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCcccccC
Q 011901 415 IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVTS 471 (475)
Q Consensus 415 vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (475)
||+|+.|...+.|.||+||+||.|.+|.++.+.+..+...++.++++++.+++++|+
T Consensus 335 vinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~ 391 (397)
T KOG0327|consen 335 VVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPS 391 (397)
T ss_pred eeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceeccc
Confidence 999999999999999999999999999999999999999999999999999999984
No 35
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.9e-49 Score=413.90 Aligned_cols=366 Identities=18% Similarity=0.274 Sum_probs=279.4
Q ss_pred CCCCCCCchHhhhhhhcccccc--------c-cCCCCCccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcC-
Q 011901 67 RPLDFKSSIAWQHAQSAVDDYV--------A-YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG- 136 (475)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~- 136 (475)
..++.-....|+..+..+.... . +.......+. .++.+..+.+.+.+...++||+.|.+|++.+..+
T Consensus 391 ~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~l~a~r~~~~~~---~~~~~~~~~~~~~~~~~f~~T~~Q~~aI~~I~~d~ 467 (926)
T TIGR00580 391 PALDKLGGKSWEKTKAKVKKSVREIAAKLIELYAKRKAIKGH---AFPPDLEWQQEFEDSFPFEETPDQLKAIEEIKADM 467 (926)
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Confidence 4466667788987643322211 1 1112222233 3455677777787765557999999999999985
Q ss_pred -----CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCC--ceEEEEcCc
Q 011901 137 -----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGT 209 (475)
Q Consensus 137 -----~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~--~~~~~~~~~ 209 (475)
+|++++|+||||||.+|+.+++..+.+ +.++++++||++||.|+++.+++.+.+. ++..++|+.
T Consensus 468 ~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~ 538 (926)
T TIGR00580 468 ESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---------GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFR 538 (926)
T ss_pred cccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccc
Confidence 789999999999999999999988754 6889999999999999999999987654 455666666
Q ss_pred chhHHHH---Hhh-cCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccC
Q 011901 210 PISHQMR---ALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 210 ~~~~~~~---~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 285 (475)
+..++.. .+. +.++|+||||..+ ...+.+++++++|+||+|+ |+......++.++.+.|+++||||
T Consensus 539 ~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahr-----fgv~~~~~L~~~~~~~~vL~~SAT 608 (926)
T TIGR00580 539 SAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQR-----FGVKQKEKLKELRTSVDVLTLSAT 608 (926)
T ss_pred cHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccc-----cchhHHHHHHhcCCCCCEEEEecC
Confidence 5444332 233 3589999999543 3456789999999999999 566667777888888999999999
Q ss_pred CChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHH
Q 011901 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA 365 (475)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~ 365 (475)
|++.+..+......++..+..... .+ ..+..+.... ........+.++...+++++|||++++.++.+++.|.
T Consensus 609 piprtl~~~l~g~~d~s~I~~~p~--~R--~~V~t~v~~~---~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~ 681 (926)
T TIGR00580 609 PIPRTLHMSMSGIRDLSIIATPPE--DR--LPVRTFVMEY---DPELVREAIRRELLRGGQVFYVHNRIESIEKLATQLR 681 (926)
T ss_pred CCHHHHHHHHhcCCCcEEEecCCC--Cc--cceEEEEEec---CHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHH
Confidence 999877776666666655543211 11 1122222211 2223344555666688999999999999999999998
Q ss_pred c---cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCC-ChhHHHHhhhccCCCCCCC
Q 011901 366 K---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKG 441 (475)
Q Consensus 366 ~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~-~~~~~~Q~~GR~gR~~~~g 441 (475)
+ ++++..+||+|++++|++++++|++|+.+|||||+++++|+|+|++++||++++|. +.++|+||+||+||.|+.|
T Consensus 682 ~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g 761 (926)
T TIGR00580 682 ELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKA 761 (926)
T ss_pred HhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCe
Confidence 6 46789999999999999999999999999999999999999999999999999987 7889999999999999999
Q ss_pred eEEEEecc------hhHHHHHHHHHH
Q 011901 442 SAILIYTD------QQARQVKSIERD 461 (475)
Q Consensus 442 ~~~~~~~~------~~~~~~~~i~~~ 461 (475)
+|++++.+ ...+.++.|++.
T Consensus 762 ~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 762 YAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred EEEEEECCcccCCHHHHHHHHHHHHh
Confidence 99999864 345566666665
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=6.2e-49 Score=403.86 Aligned_cols=340 Identities=21% Similarity=0.310 Sum_probs=261.7
Q ss_pred CCCCCHHHHHHHHH-cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcC
Q 011901 103 KLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (475)
Q Consensus 103 ~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~P 181 (475)
.+++...+...+.. .|+..++|.|.++|+.++.|+|+++++|||+|||++|++|++.. +..+|||+|
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------------~GiTLVISP 508 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------------PGITLVISP 508 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------------CCcEEEEeC
Confidence 56777778777766 68999999999999999999999999999999999999999853 456999999
Q ss_pred CHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHhh------cCCcEEEEccHHHHH--HHHhC---CCCCCCccEEE
Q 011901 182 TRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD------YGVDAVVGTPGRVID--LIKRN---ALNLSEVQFVV 250 (475)
Q Consensus 182 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Ilv~T~~~l~~--~l~~~---~~~~~~~~~vV 250 (475)
+++|+.++...+... ++....+.++.....+...+. ..++|+++||++|.. .+.+. ......+.+||
T Consensus 509 LiSLmqDQV~~L~~~--GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIV 586 (1195)
T PLN03137 509 LVSLIQDQIMNLLQA--NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFV 586 (1195)
T ss_pred HHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceec
Confidence 999998777766664 677788888877665544332 458999999999852 12111 11134588999
Q ss_pred EecccccccCC--chHHHHHH--HHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEecc
Q 011901 251 LDEADQMLSVG--FAEDVEVI--LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (475)
Q Consensus 251 iDE~H~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (475)
|||||++++|| |...+..+ +....+..+++++|||+++.+.......+.............. .++. +.+...
T Consensus 587 IDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~R---pNL~-y~Vv~k 662 (1195)
T PLN03137 587 IDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNR---PNLW-YSVVPK 662 (1195)
T ss_pred cCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCc---cceE-EEEecc
Confidence 99999999987 55555542 3344457789999999999888766555443322222111111 1111 212211
Q ss_pred CccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCcccc
Q 011901 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405 (475)
Q Consensus 327 ~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 405 (475)
.......+..++.....+...||||.++..++.+++.|.+ ++.+..+||+|++++|..+++.|.+|+++|||||+++++
T Consensus 663 ~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGM 742 (1195)
T PLN03137 663 TKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGM 742 (1195)
T ss_pred chhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhc
Confidence 1111234444554444456899999999999999999964 589999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHH
Q 011901 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460 (475)
Q Consensus 406 Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~ 460 (475)
|||+|+|++||||++|.+++.|+|++||+||.|.+|.|+++|+..|...++.+..
T Consensus 743 GIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 743 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred CCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999888766665543
No 37
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-49 Score=354.32 Aligned_cols=367 Identities=30% Similarity=0.481 Sum_probs=305.9
Q ss_pred CCCccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcC--CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCC
Q 011901 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170 (475)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~ 170 (475)
++-....+|+++.|.+++++.+..++|..|+.+|..|+|.++.. +|++.++..|+|||.+|.+.||.++.- .
T Consensus 84 sPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~------~ 157 (477)
T KOG0332|consen 84 SPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP------D 157 (477)
T ss_pred CCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc------c
Confidence 34445667999999999999999999999999999999999986 789999999999999999999988622 2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhhCCCCce--EEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHh-CCCCCCCcc
Q 011901 171 GRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQ 247 (475)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~~~ 247 (475)
...|++++++||++||.|..+.+.+.++...+ .....+.. ..+...-..+|+|+||+.+.+++.. .-+.+..++
T Consensus 158 ~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk---~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kik 234 (477)
T KOG0332|consen 158 VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSK---AKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIK 234 (477)
T ss_pred ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcc---cccCCcchhheeeCCCccHHHHHHHHHhhChhhce
Confidence 34688999999999999999999998765533 33332221 1111112268999999999999887 667788999
Q ss_pred EEEEecccccccC-CchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEE-ec
Q 011901 248 FVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI-AT 325 (475)
Q Consensus 248 ~vViDE~H~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 325 (475)
.+|+|||+.|.+. ||.++-..+...++++.|++++|||....+..++.....++..+.+... ......+.+++. ..
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~e--el~L~~IkQlyv~C~ 312 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKRE--ELALDNIKQLYVLCA 312 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehh--hccccchhhheeecc
Confidence 9999999988865 4788888999999999999999999999999999999999988876432 233344454444 44
Q ss_pred cCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHH-ccCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccc
Q 011901 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404 (475)
Q Consensus 326 ~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 404 (475)
...+|...+..+.... .-++.+|||.++..+..++..+. .+..+..+||+|..++|..+++.|+.|..+|||+|++++
T Consensus 313 ~~~~K~~~l~~lyg~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~A 391 (477)
T KOG0332|consen 313 CRDDKYQALVNLYGLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCA 391 (477)
T ss_pred chhhHHHHHHHHHhhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhh
Confidence 5567777777755433 44699999999999999999986 468899999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEcCCCC------ChhHHHHhhhccCCCCCCCeEEEEecchh-HHHHHHHHHHhCCCcccccC
Q 011901 405 RGLDVPNVDLIIHYELPN------TSETFVHRTGRTGRAGKKGSAILIYTDQQ-ARQVKSIERDVGCRFTQVTS 471 (475)
Q Consensus 405 ~Gidi~~~~~vi~~~~p~------~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~ 471 (475)
||||++.|+.||+||.|. +.+.|+||+||+||.|+.|.++-+...++ ...+..|++.++.++..+.+
T Consensus 392 RGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 392 RGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDP 465 (477)
T ss_pred cccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCC
Confidence 999999999999999995 78899999999999999999998887655 55677999999888877643
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.8e-48 Score=388.24 Aligned_cols=323 Identities=21% Similarity=0.381 Sum_probs=248.6
Q ss_pred cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.|+.+|+|+|.++++.+++|+|+++++|||||||++|++|++.. +..++|++|+++|+.|+.+.+...
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999999999999999998742 456999999999999999999876
Q ss_pred CCCCceEEEEcCcchhHHHHH----hhcCCcEEEEccHHHHHHH-HhCCC-CCCCccEEEEecccccccCC--chHHHHH
Q 011901 197 APSLDTICVYGGTPISHQMRA----LDYGVDAVVGTPGRVIDLI-KRNAL-NLSEVQFVVLDEADQMLSVG--FAEDVEV 268 (475)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~l-~~~~~-~~~~~~~vViDE~H~~~~~~--~~~~~~~ 268 (475)
++.+..+.++......... ....++|+++||+.+.... ....+ ...++++||+||||++.+|+ |...+..
T Consensus 75 --gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~ 152 (470)
T TIGR00614 75 --GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKA 152 (470)
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHH
Confidence 5666666666554432221 2345899999999875321 00111 46789999999999999876 4444433
Q ss_pred ---HHHhCCCCCcEEEEccCCChhHHHHHHhhc--CCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhcc
Q 011901 269 ---ILERLPQNRQSMMFSATMPPWIRSLTNKYL--KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343 (475)
Q Consensus 269 ---i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 343 (475)
+...+ ++.+++++|||+++.+.......+ ..+..+.. .... .++ .+.+..........+..++.....
T Consensus 153 l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~--s~~r---~nl-~~~v~~~~~~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 153 LGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCT--SFDR---PNL-YYEVRRKTPKILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC--CCCC---CCc-EEEEEeCCccHHHHHHHHHHHhcC
Confidence 33344 567899999999998766555443 23333321 1111 111 122222221223334444443445
Q ss_pred CCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCC
Q 011901 344 GGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN 422 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~ 422 (475)
+..+||||++++.++.++..|.+ ++.+..+||+|++++|..+++.|++|+++|||||+++++|+|+|++++||++++|.
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC
Confidence 66779999999999999999975 58899999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHH
Q 011901 423 TSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460 (475)
Q Consensus 423 ~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~ 460 (475)
+...|+||+||+||.|.+|.|++++++.|...++.+..
T Consensus 306 s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 306 SMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 99999999999999999999999999988876666543
No 39
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.7e-49 Score=375.92 Aligned_cols=365 Identities=29% Similarity=0.476 Sum_probs=312.8
Q ss_pred CCccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCC
Q 011901 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (475)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 173 (475)
......+|+.+.+...++..|...+|..||++|..|||.++.++|+|+++..|+|||++|.+.+++.+.. ....
T Consensus 20 ~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------~~~~ 93 (980)
T KOG4284|consen 20 QSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------RSSH 93 (980)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc------ccCc
Confidence 3445567888999999999999999999999999999999999999999999999999999888877632 2456
Q ss_pred CeEEEEcCCHHHHHHHHHHHHhhCC---CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011901 174 PLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 174 ~~~lil~Pt~~La~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (475)
++.+|++|||++|.|+.+.+...++ ++++.+..||+........++. ++|+||||+++.++++.+.++...++++|
T Consensus 94 ~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlfV 172 (980)
T KOG4284|consen 94 IQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLFV 172 (980)
T ss_pred ceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEEE
Confidence 7899999999999999999988765 7788899999988877666654 78999999999999999999999999999
Q ss_pred Eeccccccc-CCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCc-
Q 011901 251 LDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY- 328 (475)
Q Consensus 251 iDE~H~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 328 (475)
+||||.+.+ ..|..++..++..+|..+|++.+|||-+..+......++.+|..+....+ ....-++.+|+......
T Consensus 173 LDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~--d~~L~GikQyv~~~~s~n 250 (980)
T KOG4284|consen 173 LDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNAD--DVQLFGIKQYVVAKCSPN 250 (980)
T ss_pred eccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccC--CceeechhheeeeccCCc
Confidence 999999887 55899999999999999999999999999999999999999999986433 23334445444433222
Q ss_pred -------cchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHH-ccCCcccccCCCCHHHHHHHHHHHhcCCCcEEEec
Q 011901 329 -------EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400 (475)
Q Consensus 329 -------~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT 400 (475)
.|...|..+.+.+. -.++||||+....|+-++..|. .++.|.++.|.|++.+|..+++.+++=.++|||+|
T Consensus 251 nsveemrlklq~L~~vf~~ip-y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsT 329 (980)
T KOG4284|consen 251 NSVEEMRLKLQKLTHVFKSIP-YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVST 329 (980)
T ss_pred chHHHHHHHHHHHHHHHhhCc-hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEec
Confidence 25566666666653 3599999999999999999996 57999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhH-HHH----HHHHHHhCCCccc
Q 011901 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA-RQV----KSIERDVGCRFTQ 468 (475)
Q Consensus 401 ~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~-~~~----~~i~~~~~~~~~~ 468 (475)
+..++|||-++++.||+.|+|.+...|.||+|||||.|..|.+++++..... ..+ ..|.....+.+.+
T Consensus 330 DLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m~~ria~~~~~~~~p 402 (980)
T KOG4284|consen 330 DLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAMAYRIAVTVKRVVEP 402 (980)
T ss_pred chhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHHHHHHhhhheeeecc
Confidence 9999999999999999999999999999999999999999999999887544 333 4444444444444
No 40
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-50 Score=361.62 Aligned_cols=365 Identities=31% Similarity=0.514 Sum_probs=335.4
Q ss_pred CCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEE
Q 011901 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~l 177 (475)
...|..++|+..+++++.+.||..|||+|++.+|.++.++++.-.+-||||||.+|++|+++++..+. ..|.+++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~Ral 94 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRAL 94 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----cccccee
Confidence 46788999999999999999999999999999999999999999999999999999999999987643 3477899
Q ss_pred EEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011901 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 178 il~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H 255 (475)
+++||++|+.|..+.++++.. +++..+++|+....++...+..++||+++||+++.++.-...+.++.+.+||+||++
T Consensus 95 ilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 95 ILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD 174 (529)
T ss_pred eccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh
Confidence 999999999999999999875 566788899999999999999899999999999998877666789999999999999
Q ss_pred ccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHH
Q 011901 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335 (475)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 335 (475)
++..+||.+++..++.+++...|.++||||+|..+..++...+.+|..+.+ +-+..+.+............+|...+.
T Consensus 175 rlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRl--dvetkise~lk~~f~~~~~a~K~aaLl 252 (529)
T KOG0337|consen 175 RLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRL--DVETKISELLKVRFFRVRKAEKEAALL 252 (529)
T ss_pred HHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEe--ehhhhcchhhhhheeeeccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999986 334456666677777777888899999
Q ss_pred HHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCE
Q 011901 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (475)
Q Consensus 336 ~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~ 414 (475)
.++.......+++|||++...++.+...|.+ ++.+..++|.|++..|......|..++..++|.|+++++|+|+|-.+.
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccc
Confidence 9988877777999999999999999999975 588999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCcccc
Q 011901 415 IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQV 469 (475)
Q Consensus 415 vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (475)
||+||.|.+..-|+||+||+.|+|+.|.+|.+..+.+...+-.|.-.+|..+.-.
T Consensus 333 vinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~ 387 (529)
T KOG0337|consen 333 VINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFA 387 (529)
T ss_pred cccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeec
Confidence 9999999999999999999999999999999999999999999999999987653
No 41
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-49 Score=362.14 Aligned_cols=350 Identities=31% Similarity=0.495 Sum_probs=286.1
Q ss_pred HHHHHHHHcCCCCCcHHHHHhhhhHhc---------CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEE
Q 011901 109 DIVAALARRGISKLFPIQKAVLEPAMQ---------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (475)
Q Consensus 109 ~l~~~l~~~~~~~l~~~Q~~~i~~i~~---------~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil 179 (475)
.+.+.+.++++..+.|+|..+++.++. .+|+++.+|||||||++|.+|+++.+.+.. -+.-+++|+
T Consensus 147 ~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-----v~~LRavVi 221 (620)
T KOG0350|consen 147 TIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-----VKRLRAVVI 221 (620)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-----ccceEEEEE
Confidence 344558899999999999999999853 478999999999999999999999986521 234689999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCc--eEEEEcCcchhHHHHHhhc-----CCcEEEEccHHHHHHHHh-CCCCCCCccEEEE
Q 011901 180 APTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDY-----GVDAVVGTPGRVIDLIKR-NALNLSEVQFVVL 251 (475)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~Ilv~T~~~l~~~l~~-~~~~~~~~~~vVi 251 (475)
+||++|+.|+++.|.++.++.+ +..+.|......+...+.+ .+||+|+||++|.+++.+ ..+.+++++++||
T Consensus 222 vPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVI 301 (620)
T KOG0350|consen 222 VPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVI 301 (620)
T ss_pred eeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEe
Confidence 9999999999999999987555 4445566666666555543 259999999999999985 6688999999999
Q ss_pred ecccccccCCchHHHHHHHHhC----------------------------------CCCCcEEEEccCCChhHHHHHHhh
Q 011901 252 DEADQMLSVGFAEDVEVILERL----------------------------------PQNRQSMMFSATMPPWIRSLTNKY 297 (475)
Q Consensus 252 DE~H~~~~~~~~~~~~~i~~~~----------------------------------~~~~~~i~~SAT~~~~~~~~~~~~ 297 (475)
|||||+++..|...+..++..+ .+..+.+++|||+...-..+....
T Consensus 302 DEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~ 381 (620)
T KOG0350|consen 302 DEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLT 381 (620)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhh
Confidence 9999998765544443333322 112346788999887777888888
Q ss_pred cCCCcEEEecC--CCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-----cCCc
Q 011901 298 LKNPLTVDLVG--DSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNC 370 (475)
Q Consensus 298 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~ 370 (475)
++.|....... -....++..+..+.+......+...+..++... +..++|+|+++.+.+.+++..|+- .+++
T Consensus 382 l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~ 460 (620)
T KOG0350|consen 382 LHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKV 460 (620)
T ss_pred cCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhccccchh
Confidence 88885544432 123445566677777777778888888888765 677999999999999999998861 3566
Q ss_pred ccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecch
Q 011901 371 EPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (475)
Q Consensus 371 ~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~ 450 (475)
..+.|.++.+.|...++.|..|.+++|||+++++||+|+.+++.||+||+|.+...|+||+||++|+|+.|+|+.+....
T Consensus 461 s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~ 540 (620)
T KOG0350|consen 461 SEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKH 540 (620)
T ss_pred hhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 011901 451 QARQVKSIERDVGC 464 (475)
Q Consensus 451 ~~~~~~~i~~~~~~ 464 (475)
+.+.+..+-+..+.
T Consensus 541 ~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 541 EKRLFSKLLKKTNL 554 (620)
T ss_pred cchHHHHHHHHhcc
Confidence 98888877777654
No 42
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4.6e-47 Score=404.33 Aligned_cols=366 Identities=17% Similarity=0.260 Sum_probs=277.6
Q ss_pred CCCCCCCchHhhhhhhccccccc---------cCCCCCccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcC-
Q 011901 67 RPLDFKSSIAWQHAQSAVDDYVA---------YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG- 136 (475)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~- 136 (475)
..+..-....|+..+..+..... +.......+. .+..+....+.+.+...++||+.|.+|++.++.+
T Consensus 540 ~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~~~---~~~~~~~~~~~~~~~~~~~~T~~Q~~aI~~il~d~ 616 (1147)
T PRK10689 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGF---AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDM 616 (1147)
T ss_pred CccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 34666677889876433222111 1222222333 2344556666666655558999999999999987
Q ss_pred -----CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCC--CceEEEEcCc
Q 011901 137 -----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGT 209 (475)
Q Consensus 137 -----~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~--~~~~~~~~~~ 209 (475)
+|++++|+||||||.+|+.+++..+. .+.+++|++||++||.|+++.+++.+.. +++.+++++.
T Consensus 617 ~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---------~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~ 687 (1147)
T PRK10689 617 CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 687 (1147)
T ss_pred hcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCC
Confidence 79999999999999999888877653 3788999999999999999999987654 4566677777
Q ss_pred chhHHHHHhh----cCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccC
Q 011901 210 PISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 210 ~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 285 (475)
+...+...+. +.++|+||||+.+. ..+.+++++++|+||+|++ +......++.++.++|+++||||
T Consensus 688 s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrf-----G~~~~e~lk~l~~~~qvLl~SAT 757 (1147)
T PRK10689 688 SAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRF-----GVRHKERIKAMRADVDILTLTAT 757 (1147)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhc-----chhHHHHHHhcCCCCcEEEEcCC
Confidence 7665544332 46899999997542 3456789999999999995 33445667778889999999999
Q ss_pred CChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHH
Q 011901 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA 365 (475)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~ 365 (475)
|++.+..+....+.++..+..... .. ..+..+... .........++.+...+++++|||++++.++.+++.|.
T Consensus 758 piprtl~l~~~gl~d~~~I~~~p~--~r--~~v~~~~~~---~~~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~ 830 (1147)
T PRK10689 758 PIPRTLNMAMSGMRDLSIIATPPA--RR--LAVKTFVRE---YDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 (1147)
T ss_pred CCHHHHHHHHhhCCCcEEEecCCC--CC--CCceEEEEe---cCcHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHH
Confidence 999888888777777776653211 11 112222221 12223345566666678899999999999999999997
Q ss_pred cc---CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCC-ChhHHHHhhhccCCCCCCC
Q 011901 366 KS---YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKG 441 (475)
Q Consensus 366 ~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~-~~~~~~Q~~GR~gR~~~~g 441 (475)
+. .++..+||+|++++|++++.+|++|+++|||||+++++|+|+|++++||+.+++. +..+|+||+||+||.|+.|
T Consensus 831 ~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g 910 (1147)
T PRK10689 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 (1147)
T ss_pred HhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCce
Confidence 64 5788999999999999999999999999999999999999999999999887764 8889999999999999999
Q ss_pred eEEEEecc------hhHHHHHHHHHH
Q 011901 442 SAILIYTD------QQARQVKSIERD 461 (475)
Q Consensus 442 ~~~~~~~~------~~~~~~~~i~~~ 461 (475)
+|++++.+ ...+.++.|++.
T Consensus 911 ~a~ll~~~~~~~~~~~~~rl~~~~~~ 936 (1147)
T PRK10689 911 YAWLLTPHPKAMTTDAQKRLEAIASL 936 (1147)
T ss_pred EEEEEeCCCcccCHHHHHHHHHHHHh
Confidence 99999854 334556666654
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=6e-47 Score=399.74 Aligned_cols=361 Identities=19% Similarity=0.324 Sum_probs=260.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHH
Q 011901 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
+++.+.+.+.+ ++..|+|+|.++++.+++|+|+++++|||||||++|++|++..+.......+...+.+++|++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56777777766 67889999999999999999999999999999999999999988753322222346789999999999
Q ss_pred HHHHHHHHHh-------h-------CCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCC--CCCCccEE
Q 011901 186 AKQVEKEFHE-------S-------APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL--NLSEVQFV 249 (475)
Q Consensus 186 a~q~~~~~~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~--~~~~~~~v 249 (475)
++|+++.+.+ + .+++.+.+.+|+.+...+.+.+...++|+||||++|..++....+ .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876542 1 125567778888887777777777899999999999877755432 37899999
Q ss_pred EEecccccccCCchHHHHHHHHhC----CCCCcEEEEccCCChhHHHHHHhhcCC-----CcEEEecCCCccccccCeeE
Q 011901 250 VLDEADQMLSVGFAEDVEVILERL----PQNRQSMMFSATMPPWIRSLTNKYLKN-----PLTVDLVGDSDQKLADGISL 320 (475)
Q Consensus 250 ViDE~H~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 320 (475)
|+||+|.+.+..++..+...+.++ +...|++++|||+++. .......... +....+......... .+..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~~~k~~-~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDARFVKPF-DIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccCCCccc-eEEE
Confidence 999999998776776655544433 3678999999999763 2222222111 111111111100000 0000
Q ss_pred EE----E-eccCccc-hHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHcc-------CCcccccCCCCHHHHHHHHH
Q 011901 321 YS----I-ATSMYEK-PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-------YNCEPLHGDISQSQRERTLS 387 (475)
Q Consensus 321 ~~----~-~~~~~~~-~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-------~~~~~~h~~~~~~~r~~~~~ 387 (475)
.. . ....... ......+.+....++++||||+++..++.++..|.+. .++..+||++++++|..+++
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~ 334 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEE 334 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHH
Confidence 00 0 0000111 1222333333345789999999999999999998762 56889999999999999999
Q ss_pred HHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCC-CCCCeEEEEecc-hh-HHHHHHHHHHhCC
Q 011901 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA-GKKGSAILIYTD-QQ-ARQVKSIERDVGC 464 (475)
Q Consensus 388 ~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~-~~~g~~~~~~~~-~~-~~~~~~i~~~~~~ 464 (475)
.|++|+.+|||||+++++|||+|++++||+++.|.+...|+||+||+||. |..+.++++... .+ .+....++.....
T Consensus 335 ~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~ 414 (876)
T PRK13767 335 KLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREG 414 (876)
T ss_pred HHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999986 444444444443 22 2333345555666
Q ss_pred Ccccc
Q 011901 465 RFTQV 469 (475)
Q Consensus 465 ~~~~~ 469 (475)
.++++
T Consensus 415 ~ie~~ 419 (876)
T PRK13767 415 KIDRV 419 (876)
T ss_pred CCCCC
Confidence 66653
No 44
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4e-47 Score=397.83 Aligned_cols=351 Identities=25% Similarity=0.390 Sum_probs=265.4
Q ss_pred cccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhh-HhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEE
Q 011901 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~li 178 (475)
.|+++++++.+.+.+.+.|+.+|+|+|.++++. +..|+|+++++|||||||++|.++++.++.. +.+++|
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---------~~kal~ 72 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---------GGKALY 72 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------CCcEEE
Confidence 467899999999999999999999999999998 7789999999999999999999999998843 667999
Q ss_pred EcCCHHHHHHHHHHHHhhCC-CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc
Q 011901 179 LAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (475)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~ 257 (475)
++|+++|+.|+++.++++.+ ++++..++|+...... .....+|+|+||+++..++.++...+++++++|+||+|.+
T Consensus 73 i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 73 IVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred EeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 99999999999999997643 5667777777653321 2245799999999999988876556789999999999999
Q ss_pred ccCCchHHHHHHHHhC---CCCCcEEEEccCCChhHHHHHHhhcCC--------CcEEE--ecCCCccccccCeeEEEEe
Q 011901 258 LSVGFAEDVEVILERL---PQNRQSMMFSATMPPWIRSLTNKYLKN--------PLTVD--LVGDSDQKLADGISLYSIA 324 (475)
Q Consensus 258 ~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~ 324 (475)
.+.+++..++.++.++ .+..|++++|||+++. ..+. .|+.. |.... +.......... ....
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la-~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~--~~~~-- 223 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELA-DWLDAELVDSEWRPIDLREGVFYGGAIHFDD--SQRE-- 223 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHH-HHhCCCcccCCCCCCCCeeeEecCCeecccc--cccc--
Confidence 8888888888776655 4678999999999763 2332 23221 11110 00000000000 0000
Q ss_pred ccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHcc-------------------------------------
Q 011901 325 TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS------------------------------------- 367 (475)
Q Consensus 325 ~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~------------------------------------- 367 (475)
.....+...+..+......++++||||++++.++.++..|.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~ 303 (737)
T PRK02362 224 VEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVA 303 (737)
T ss_pred CCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHH
Confidence 0111123334444444557789999999999999888777432
Q ss_pred CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEE----cC-----CCCChhHHHHhhhccCCCC
Q 011901 368 YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YE-----LPNTSETFVHRTGRTGRAG 438 (475)
Q Consensus 368 ~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~----~~-----~p~~~~~~~Q~~GR~gR~~ 438 (475)
.++..+||+|++++|+.+++.|++|.++|||||+.+++|+|+|..++||. || .|.+..+|.||+|||||.|
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g 383 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPG 383 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCC
Confidence 25678899999999999999999999999999999999999999999986 55 5789999999999999988
Q ss_pred CC--CeEEEEecchhHHHHHHHHHHhCCCcccc
Q 011901 439 KK--GSAILIYTDQQARQVKSIERDVGCRFTQV 469 (475)
Q Consensus 439 ~~--g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (475)
.+ |.|+++..+.+ +.-+.+++++....+++
T Consensus 384 ~d~~G~~ii~~~~~~-~~~~~~~~~l~~~~~~i 415 (737)
T PRK02362 384 LDPYGEAVLLAKSYD-ELDELFERYIWADPEDV 415 (737)
T ss_pred CCCCceEEEEecCch-hHHHHHHHHHhCCCCce
Confidence 65 88999887643 22233455554444444
No 45
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.8e-46 Score=383.25 Aligned_cols=331 Identities=21% Similarity=0.364 Sum_probs=251.4
Q ss_pred CCCHHHHHHHHH-cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCH
Q 011901 105 DISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 105 ~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
+.+....+.|++ .|+..++|+|.++++.++.|+++++.+|||+|||++|++|++.. +..+++++|++
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------------~g~tlVisPl~ 75 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------------DGLTLVVSPLI 75 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------------CCCEEEEecHH
Confidence 444445556655 69999999999999999999999999999999999999998843 34699999999
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHH----hhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccc
Q 011901 184 ELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA----LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 184 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~ 259 (475)
+|+.|+.+.+... ++....+.++......... ..+..+++++||+++........+...+++++|+||||++.+
T Consensus 76 sL~~dqv~~l~~~--gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~ 153 (607)
T PRK11057 76 SLMKDQVDQLLAN--GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQ 153 (607)
T ss_pred HHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccc
Confidence 9999999999876 4666666666554433221 224589999999998742222223345789999999999998
Q ss_pred CC--chHHHH---HHHHhCCCCCcEEEEccCCChhHHHHHHhhc--CCCcEEEecCCCccccccCeeEEEEeccCccchH
Q 011901 260 VG--FAEDVE---VILERLPQNRQSMMFSATMPPWIRSLTNKYL--KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332 (475)
Q Consensus 260 ~~--~~~~~~---~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (475)
|+ |...+. .+...+ ++.+++++|||+++.........+ .++.... ..... .++. +.. .....+..
T Consensus 154 ~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~--~~~~r---~nl~-~~v-~~~~~~~~ 225 (607)
T PRK11057 154 WGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI--SSFDR---PNIR-YTL-VEKFKPLD 225 (607)
T ss_pred ccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE--CCCCC---Ccce-eee-eeccchHH
Confidence 76 444433 333344 568899999999987765444433 3333221 11111 1111 111 11122233
Q ss_pred HHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCC
Q 011901 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (475)
Q Consensus 333 ~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~ 411 (475)
.+..++.. ..+.++||||+++++++.+++.|.+ ++.+..+||+|++++|..+++.|.+|+.+|||||+++++|+|+|+
T Consensus 226 ~l~~~l~~-~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~ 304 (607)
T PRK11057 226 QLMRYVQE-QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPN 304 (607)
T ss_pred HHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCC
Confidence 34444443 3567999999999999999999975 588999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHH
Q 011901 412 VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (475)
Q Consensus 412 ~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i 458 (475)
+++||+++.|.|...|+|++||+||.|.+|.|++++++.|...++.+
T Consensus 305 V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred cCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887655544
No 46
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.5e-45 Score=377.90 Aligned_cols=327 Identities=22% Similarity=0.371 Sum_probs=254.0
Q ss_pred HHHHH-cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHH
Q 011901 112 AALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (475)
Q Consensus 112 ~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (475)
+.|.+ .|+.+++|+|.++++.++.|+|+++++|||+|||++|++|++.. +..++|++|+++|+.|+.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------------~g~~lVisPl~sL~~dq~ 70 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------------KGLTVVISPLISLMKDQV 70 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------------CCcEEEEcCCHHHHHHHH
Confidence 34544 69999999999999999999999999999999999999998742 345899999999999999
Q ss_pred HHHHhhCCCCceEEEEcCcchhHHHHH----hhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCC--chH
Q 011901 191 KEFHESAPSLDTICVYGGTPISHQMRA----LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--FAE 264 (475)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~--~~~ 264 (475)
+.++.. ++.+..+.++......... ..+..+|+++||+++........+...++++||+||+|++..|+ |..
T Consensus 71 ~~l~~~--gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp 148 (591)
T TIGR01389 71 DQLRAA--GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRP 148 (591)
T ss_pred HHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHH
Confidence 999886 4666667776655543322 23568999999999865433333456789999999999999876 444
Q ss_pred HHH---HHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHh
Q 011901 265 DVE---VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341 (475)
Q Consensus 265 ~~~---~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 341 (475)
.+. .+...++. .+++++|||+++.+.......+..+........... .++ .+.......+...+..++...
T Consensus 149 ~y~~l~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r---~nl--~~~v~~~~~~~~~l~~~l~~~ 222 (591)
T TIGR01389 149 EYQRLGSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFITSFDR---PNL--RFSVVKKNNKQKFLLDYLKKH 222 (591)
T ss_pred HHHHHHHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCC---CCc--EEEEEeCCCHHHHHHHHHHhc
Confidence 433 34445544 459999999999887766665542221111111111 111 111122234455566666554
Q ss_pred ccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCC
Q 011901 342 AKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL 420 (475)
Q Consensus 342 ~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~ 420 (475)
. +.++||||++++.++.+++.|.. ++++..+||+|+.++|+.+++.|.+|+++|||||+++++|+|+|++++||++++
T Consensus 223 ~-~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~ 301 (591)
T TIGR01389 223 R-GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDM 301 (591)
T ss_pred C-CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCC
Confidence 3 67999999999999999999964 588899999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHH
Q 011901 421 PNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459 (475)
Q Consensus 421 p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~ 459 (475)
|.|...|.|++||+||.|++|.|+++|++.|...++.+.
T Consensus 302 p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 302 PGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred CCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 999999999999999999999999999988866555443
No 47
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.1e-45 Score=383.87 Aligned_cols=352 Identities=24% Similarity=0.354 Sum_probs=263.7
Q ss_pred cccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhh-HhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEE
Q 011901 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~li 178 (475)
+|+++++++.+.+.+.+.|+.+|+|+|.++++. ++.|+|+++++|||||||++|.+|++.++.. .+.++++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~l~ 73 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKAVY 73 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeEEE
Confidence 466889999999999999999999999999986 7899999999999999999999999988754 2568999
Q ss_pred EcCCHHHHHHHHHHHHhhCC-CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc
Q 011901 179 LAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (475)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~ 257 (475)
++|+++|+.|+++.+..+.. ++++..++|+...... ....++|+|+||+++..++......++++++||+||+|.+
T Consensus 74 l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 74 LVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred EeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 99999999999999887532 5667777777654322 2345899999999999888776666889999999999999
Q ss_pred ccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCee--EEEEeccC-ccc--hH
Q 011901 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS--LYSIATSM-YEK--PS 332 (475)
Q Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~--~~ 332 (475)
.+.+++..+..++..+....|++++|||+++. ..+.. |++....... .........+. .+...... ..+ ..
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~~~--~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVVSD--WRPVKLRKGVFYQGFLFWEDGKIERFPNS 226 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCccccCC--CCCCcceeeEecCCeeeccCcchhcchHH
Confidence 98889999999999999899999999999763 44443 4433221110 00000000000 00000010 001 11
Q ss_pred HHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc----------------------------------cCCcccccCCCC
Q 011901 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK----------------------------------SYNCEPLHGDIS 378 (475)
Q Consensus 333 ~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~----------------------------------~~~~~~~h~~~~ 378 (475)
....+.+....++++||||++++.++.++..|.+ ..++..+||+|+
T Consensus 227 ~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 227 WESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 1112222233578999999999999877655531 125788999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEE-------cCCCC-ChhHHHHhhhccCCCC--CCCeEEEEec
Q 011901 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH-------YELPN-TSETFVHRTGRTGRAG--KKGSAILIYT 448 (475)
Q Consensus 379 ~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~-------~~~p~-~~~~~~Q~~GR~gR~~--~~g~~~~~~~ 448 (475)
+++|..+++.|++|.++|||||+.+++|+|+|.+++||. ++.|. +..+|.||+||+||.| ..|.++++.+
T Consensus 307 ~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 307 RTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 999999999999999999999999999999999999984 44444 6789999999999964 6799999988
Q ss_pred chhHHHHHHHHHHhCCCccc
Q 011901 449 DQQARQVKSIERDVGCRFTQ 468 (475)
Q Consensus 449 ~~~~~~~~~i~~~~~~~~~~ 468 (475)
..+... .+++++....+.
T Consensus 387 ~~~~~~--~~~~~~~~~pe~ 404 (720)
T PRK00254 387 TEEPSK--LMERYIFGKPEK 404 (720)
T ss_pred CcchHH--HHHHHHhCCchh
Confidence 655332 245555444433
No 48
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-46 Score=351.11 Aligned_cols=370 Identities=29% Similarity=0.463 Sum_probs=299.0
Q ss_pred ccCCcccC----CCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCC
Q 011901 96 DEGLDISK----LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171 (475)
Q Consensus 96 ~~~~~~~~----~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~ 171 (475)
.+...|.+ +...+.+++.+...+|..|+|.|.+++|.++.+++++.|+|||||||++|.+|++.++...... ...
T Consensus 129 ~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~-~~~ 207 (593)
T KOG0344|consen 129 PPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQE-KHK 207 (593)
T ss_pred CccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcc-cCc
Confidence 34444554 5678889999999999999999999999999999999999999999999999999999775532 223
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHhhC--CCCc--eEEEEcCcchhHHHHH-hhcCCcEEEEccHHHHHHHHhCC--CCCC
Q 011901 172 RNPLCLVLAPTRELAKQVEKEFHESA--PSLD--TICVYGGTPISHQMRA-LDYGVDAVVGTPGRVIDLIKRNA--LNLS 244 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~-~~~~~~Ilv~T~~~l~~~l~~~~--~~~~ 244 (475)
.|.+++|+.||++|+.|++.++.++. ++.. +...........+... ....++|+++||.++...+..+. +.+.
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~ 287 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLS 287 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhh
Confidence 57899999999999999999999987 3222 2222222111211111 22347999999999999998876 6788
Q ss_pred CccEEEEecccccccC-CchHHHHHHHHhCC-CCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEE
Q 011901 245 EVQFVVLDEADQMLSV-GFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS 322 (475)
Q Consensus 245 ~~~~vViDE~H~~~~~-~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (475)
.+.++|+||++++.+. .|..++..++..+. ++..+-+||||.+.++..+......++..+.+... ........+...
T Consensus 288 ~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~-~sa~~~V~Qelv 366 (593)
T KOG0344|consen 288 KVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLR-NSANETVDQELV 366 (593)
T ss_pred eeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecc-hhHhhhhhhhhe
Confidence 9999999999999988 88899999988875 45566789999999999999998887777754322 222222222334
Q ss_pred EeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHH--ccCCcccccCCCCHHHHHHHHHHHhcCCCcEEEec
Q 011901 323 IATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA--KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400 (475)
Q Consensus 323 ~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~--~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT 400 (475)
.......|.-.+.+++....+ .+++||+.+.+.+..+.+.|. .++.+..+||..++.+|+..++.|+.|+++|||||
T Consensus 367 F~gse~~K~lA~rq~v~~g~~-PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT 445 (593)
T KOG0344|consen 367 FCGSEKGKLLALRQLVASGFK-PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT 445 (593)
T ss_pred eeecchhHHHHHHHHHhccCC-CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEeh
Confidence 445566777788888877644 499999999999999999984 56889999999999999999999999999999999
Q ss_pred CccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHh---CCCccc
Q 011901 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV---GCRFTQ 468 (475)
Q Consensus 401 ~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~---~~~~~~ 468 (475)
+++++|+|+.+++.||+||.|.+...|+||+||+||+|+.|.+++||++.|...++.|..-. |+.+.+
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe 516 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPE 516 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchH
Confidence 99999999999999999999999999999999999999999999999999887776665443 555443
No 49
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1e-44 Score=365.76 Aligned_cols=358 Identities=22% Similarity=0.335 Sum_probs=277.6
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHH
Q 011901 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (475)
Q Consensus 105 ~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 184 (475)
-+++.+.+++... +.+|||.|.+|++.+.+|+|+|+.+|||||||+++++|++..+.+.. ......+..+||+.|.++
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLKA 84 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHHH
Confidence 3789999999988 88999999999999999999999999999999999999999998853 222345688999999999
Q ss_pred HHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCC--CCCCCccEEEEecccccccC
Q 011901 185 LAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLSV 260 (475)
Q Consensus 185 La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~--~~~~~~~~vViDE~H~~~~~ 260 (475)
|.+++.+++..+.. ++.+.+.+|+++..++.+...+.+||+++||+.|.-++.... -.+.++++||+||+|.+.+.
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcc
Confidence 99999999988764 667788899999999999999999999999999987775533 24889999999999999887
Q ss_pred CchHHHHHHHHhCC---CCCcEEEEccCCChhHHHHHHhhcCC--CcEEEecCCCccccccCeeEEEEecc----Cccch
Q 011901 261 GFAEDVEVILERLP---QNRQSMMFSATMPPWIRSLTNKYLKN--PLTVDLVGDSDQKLADGISLYSIATS----MYEKP 331 (475)
Q Consensus 261 ~~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 331 (475)
..+.++..-++++. ...|.+++|||..+. ...+....+. +..+.... ..+..+ +........ .....
T Consensus 165 KRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~--~~k~~~-i~v~~p~~~~~~~~~~~~ 240 (814)
T COG1201 165 KRGVQLALSLERLRELAGDFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVS--AAKKLE-IKVISPVEDLIYDEELWA 240 (814)
T ss_pred ccchhhhhhHHHHHhhCcccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcc--cCCcce-EEEEecCCccccccchhH
Confidence 77777765555542 378999999999864 3333333333 22332211 111110 110000000 11112
Q ss_pred HHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHcc--CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCC
Q 011901 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS--YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (475)
Q Consensus 332 ~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi 409 (475)
..+..+.+...+...++||+||+..+|.++..|++. ..+..+||+++.++|..+.++|++|+.+++|||+.++-|||+
T Consensus 241 ~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 241 ALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 233333333345568999999999999999999876 488899999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhHHHHhhhccCC-CCCCCeEEEEecchh--HHHHHHHHHHhCCCccc
Q 011901 410 PNVDLIIHYELPNTSETFVHRTGRTGR-AGKKGSAILIYTDQQ--ARQVKSIERDVGCRFTQ 468 (475)
Q Consensus 410 ~~~~~vi~~~~p~~~~~~~Q~~GR~gR-~~~~g~~~~~~~~~~--~~~~~~i~~~~~~~~~~ 468 (475)
.+++.||+++.|++.+.+.||+||+|+ .+..+..+++..+.+ .+........+...++.
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~ 382 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLER 382 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCccc
Confidence 999999999999999999999999996 566677777777632 33444555555555553
No 50
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.1e-44 Score=370.38 Aligned_cols=385 Identities=19% Similarity=0.286 Sum_probs=306.3
Q ss_pred CcccccccCCccccccc---------------cccCCCCCCCchHhhhhhhccccccc---------cCCCCCccCCccc
Q 011901 47 HDDIIKSRFSAGTREFH---------------AISRPLDFKSSIAWQHAQSAVDDYVA---------YDDSSKDEGLDIS 102 (475)
Q Consensus 47 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 102 (475)
..++..++|....+.+- .....++.-....|+.++..+..... +......++.
T Consensus 499 ~~dyL~l~Ya~~dkLyVPVeql~lisrY~g~~~~~p~L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~--- 575 (1139)
T COG1197 499 ERDYLELEYAGEDKLYVPVEQLHLISRYVGASDEAPKLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGF--- 575 (1139)
T ss_pred ccceEEEEEcCCCeEEEEHHHhhHHhhccCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---
Confidence 34556667776644331 11234777777889987543332211 2333444454
Q ss_pred CCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcC------CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeE
Q 011901 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~------~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 176 (475)
.++.+....+.+...-+++-|+-|..||+.+.++ +|.|+||++|.|||.+++-+++.++.+ |.||
T Consensus 576 af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---------GKQV 646 (1139)
T COG1197 576 AFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---------GKQV 646 (1139)
T ss_pred CCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---------CCeE
Confidence 5667888999999988888999999999999865 789999999999999999999998844 8999
Q ss_pred EEEcCCHHHHHHHHHHHHhhCCCCceEE--EEcCcchhHHHH---Hhh-cCCcEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011901 177 LVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMR---ALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 177 lil~Pt~~La~q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (475)
.++|||..||+||++.|++.+.++.+.+ +..-.+.+++.. .+. +..||+|||| -+.+..+.+++++++|
T Consensus 647 AvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH-----rLL~kdv~FkdLGLlI 721 (1139)
T COG1197 647 AVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH-----RLLSKDVKFKDLGLLI 721 (1139)
T ss_pred EEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech-----HhhCCCcEEecCCeEE
Confidence 9999999999999999999998776544 333333333333 233 4599999994 4445667799999999
Q ss_pred EecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccc
Q 011901 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (475)
Q Consensus 251 iDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (475)
|||-|+ |+...+.-++.++.+..++-|||||.|.+..+....+++-..+.... .+......+ ....+.
T Consensus 722 IDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP------~~R~pV~T~-V~~~d~ 789 (1139)
T COG1197 722 IDEEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPP------EDRLPVKTF-VSEYDD 789 (1139)
T ss_pred Eechhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCC------CCCcceEEE-EecCCh
Confidence 999999 99999999999999999999999999999999998888877775321 122222222 233444
Q ss_pred hHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHcc---CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCC
Q 011901 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS---YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (475)
Q Consensus 331 ~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gi 407 (475)
..+-..+++++..||+++..+|.++..+.+++.|.+- .++.+.||.|+..+-+++|.+|.+|+++|||||++++.||
T Consensus 790 ~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGI 869 (1139)
T COG1197 790 LLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGI 869 (1139)
T ss_pred HHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCc
Confidence 5666778889999999999999999999999999874 4578889999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCC-ChhHHHHhhhccCCCCCCCeEEEEecch------hHHHHHHHHH
Q 011901 408 DVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGSAILIYTDQ------QARQVKSIER 460 (475)
Q Consensus 408 di~~~~~vi~~~~p~-~~~~~~Q~~GR~gR~~~~g~~~~~~~~~------~~~~~~~i~~ 460 (475)
|||+++.+|+.++.. +.++++|.+||+||.++.++||+++.+. ..+.++.|+.
T Consensus 870 DIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 870 DIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred CCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 999999999999998 9999999999999999999999999863 2455666665
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5e-44 Score=372.17 Aligned_cols=348 Identities=20% Similarity=0.281 Sum_probs=254.3
Q ss_pred cccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEE
Q 011901 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil 179 (475)
+|+++++++.+.+.+.+.++. |+++|.++++.+..++++++++|||||||+++.++++..+.. +.+++++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------~~k~v~i 71 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------GLKSIYI 71 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------CCcEEEE
Confidence 466889999999999998875 999999999999999999999999999999999999888744 5679999
Q ss_pred cCCHHHHHHHHHHHHhhCC-CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011901 180 APTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~ 258 (475)
+|+++|+.|+++++.++.. +..+...+|+...... ....++|+|+||+++..++.++...+.++++||+||+|.+.
T Consensus 72 ~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 72 VPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred echHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 9999999999999987532 4556666666543322 22457999999999999888776668899999999999998
Q ss_pred cCCchHHHHHHHHh---CCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCee---EEEEeccCccchH
Q 011901 259 SVGFAEDVEVILER---LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS---LYSIATSMYEKPS 332 (475)
Q Consensus 259 ~~~~~~~~~~i~~~---~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 332 (475)
+.+++..+..++.. ++++.|++++|||+++. ..+.. |+......... ........+. .............
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~~~~~~--r~vpl~~~i~~~~~~~~~~~~~~~~~ 224 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASLIKSNF--RPVPLKLGILYRKRLILDGYERSQVD 224 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCccCCCC--CCCCeEEEEEecCeeeeccccccccc
Confidence 87788777776554 45678999999999763 33433 43322211000 0000000000 0000001111111
Q ss_pred HHHHHHHH-hccCCcEEEEecChhhHHHHHHHHHcc--------------------------CCcccccCCCCHHHHHHH
Q 011901 333 IIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAKS--------------------------YNCEPLHGDISQSQRERT 385 (475)
Q Consensus 333 ~l~~l~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~--------------------------~~~~~~h~~~~~~~r~~~ 385 (475)
+..++.+ ...++++||||++++.++.++..|.+. .++..+||+|++++|..+
T Consensus 225 -~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~v 303 (674)
T PRK01172 225 -INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFI 303 (674)
T ss_pred -HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHH
Confidence 2333333 456789999999999999998887542 246678999999999999
Q ss_pred HHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCC---------CCChhHHHHhhhccCCCCC--CCeEEEEecchhHHH
Q 011901 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL---------PNTSETFVHRTGRTGRAGK--KGSAILIYTDQQARQ 454 (475)
Q Consensus 386 ~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~---------p~~~~~~~Q~~GR~gR~~~--~g~~~~~~~~~~~~~ 454 (475)
++.|++|.++|||||+++++|+|+|+. .||+.+. |.+..+|.||+|||||.|. .|.++++....+ .
T Consensus 304 e~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~--~ 380 (674)
T PRK01172 304 EEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA--S 380 (674)
T ss_pred HHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc--c
Confidence 999999999999999999999999985 4555443 4578899999999999874 566777765432 2
Q ss_pred HHHHHHHhCCCccc
Q 011901 455 VKSIERDVGCRFTQ 468 (475)
Q Consensus 455 ~~~i~~~~~~~~~~ 468 (475)
...+.+++....++
T Consensus 381 ~~~~~~~l~~~~~p 394 (674)
T PRK01172 381 YDAAKKYLSGEPEP 394 (674)
T ss_pred HHHHHHHHcCCCCc
Confidence 23355555433333
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=6.8e-42 Score=366.39 Aligned_cols=325 Identities=22% Similarity=0.305 Sum_probs=236.3
Q ss_pred EEcCCCCchhHHHHHHHHHHHHhhhhh----cCCCCCCeEEEEcCCHHHHHHHHHHHHhh--------------CCCCce
Q 011901 141 GRARTGTGKTLAFGIPILDKIIKFNEK----HGRGRNPLCLVLAPTRELAKQVEKEFHES--------------APSLDT 202 (475)
Q Consensus 141 i~~~tGsGKT~~~~~~~l~~l~~~~~~----~~~~~~~~~lil~Pt~~La~q~~~~~~~~--------------~~~~~~ 202 (475)
|++|||||||++|++|++..+...... .....+.++|||+|+++|+.|++++++.. ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998753211 11234689999999999999999988641 125677
Q ss_pred EEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCC-CCCCCccEEEEecccccccCCchHHHH----HHHHhCCCCC
Q 011901 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-LNLSEVQFVVLDEADQMLSVGFAEDVE----VILERLPQNR 277 (475)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~-~~~~~~~~vViDE~H~~~~~~~~~~~~----~i~~~~~~~~ 277 (475)
...+|+.+..++.+.+.+.++|+|+||++|..++.++. ..++++++|||||+|.+.+..++.++. .+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 78889988888777777789999999999998876542 358999999999999998765555544 4444456778
Q ss_pred cEEEEccCCChhHHHHHHhhcC-CCcEEEecCCCccccccCeeEEEEeccCcc---------------------chHHHH
Q 011901 278 QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYE---------------------KPSIIG 335 (475)
Q Consensus 278 ~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~l~ 335 (475)
|+|++|||+.+. ..+...... .+..+. .....+. ..+..+ +...... ......
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv--~~~~~r~-~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVV--NPPAMRH-PQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEE--CCCCCcc-cceEEE-EecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 999999999874 444433322 233332 1111111 111111 1110000 001123
Q ss_pred HHHHHhccCCcEEEEecChhhHHHHHHHHHccC----------------------------------CcccccCCCCHHH
Q 011901 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKSY----------------------------------NCEPLHGDISQSQ 381 (475)
Q Consensus 336 ~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~----------------------------------~~~~~h~~~~~~~ 381 (475)
.++.....+.++||||+|+..++.++..|++.. .+..+||+|++++
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 344445567899999999999999999886421 1457899999999
Q ss_pred HHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCC-CCCCeEEEEecchh--HHHHHHH
Q 011901 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA-GKKGSAILIYTDQQ--ARQVKSI 458 (475)
Q Consensus 382 r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~-~~~g~~~~~~~~~~--~~~~~~i 458 (475)
|..+++.|++|+.++||||+.++.|||++++++||+++.|.+..+|+||+||+||. |..+.++++..+.+ .+....+
T Consensus 316 R~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle~~~~v 395 (1490)
T PRK09751 316 RAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIV 395 (1490)
T ss_pred HHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999995 34455564444322 2223357
Q ss_pred HHHhCCCccccc
Q 011901 459 ERDVGCRFTQVT 470 (475)
Q Consensus 459 ~~~~~~~~~~~~ 470 (475)
+..+...++++.
T Consensus 396 e~~l~g~iE~~~ 407 (1490)
T PRK09751 396 ECMFAGRLENLT 407 (1490)
T ss_pred HHHhcCCCCccC
Confidence 788888887753
No 53
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-43 Score=301.37 Aligned_cols=330 Identities=29% Similarity=0.524 Sum_probs=286.6
Q ss_pred cccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEE
Q 011901 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil 179 (475)
.|.++-+.+++++++..+|+..|+..|.++||...-|+++++++..|-|||.+|.++.++++.- ......++++
T Consensus 43 gfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep------v~g~vsvlvm 116 (387)
T KOG0329|consen 43 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP------VDGQVSVLVM 116 (387)
T ss_pred chhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC------CCCeEEEEEE
Confidence 4668889999999999999999999999999999999999999999999999999999998732 2334579999
Q ss_pred cCCHHHHHHHHHH---HHhhCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccc
Q 011901 180 APTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (475)
Q Consensus 180 ~Pt~~La~q~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~ 256 (475)
|.|++||.|+.++ |.++.|+.++.+.+||...+.....+.+-++|+|+||+++..++.++.+++++++..|+|||+.
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK 196 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH
Confidence 9999999999665 5667789999999999999988888888899999999999999999999999999999999998
Q ss_pred cccC-CchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHH
Q 011901 257 MLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335 (475)
Q Consensus 257 ~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 335 (475)
|+++ +....+..+.+.-|...|++++|||++..++.....++.+|..+.+. +...-....+.++++.....+|...+.
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vD-dE~KLtLHGLqQ~YvkLke~eKNrkl~ 275 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVD-DEAKLTLHGLQQYYVKLKENEKNRKLN 275 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhcc-chhhhhhhhHHHHHHhhhhhhhhhhhh
Confidence 8754 35677888889999999999999999999999999999999888643 333445566777888888888888888
Q ss_pred HHHHHhccCCcEEEEecChhhHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEE
Q 011901 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLI 415 (475)
Q Consensus 336 ~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~v 415 (475)
.++..+ .-.+++||+.+..... | +.+ +|||+..++|+|+..++.|
T Consensus 276 dLLd~L-eFNQVvIFvKsv~Rl~------------------------------f---~kr-~vat~lfgrgmdiervNi~ 320 (387)
T KOG0329|consen 276 DLLDVL-EFNQVVIFVKSVQRLS------------------------------F---QKR-LVATDLFGRGMDIERVNIV 320 (387)
T ss_pred hhhhhh-hhcceeEeeehhhhhh------------------------------h---hhh-hHHhhhhccccCcccceee
Confidence 888766 3459999998876500 2 123 8999999999999999999
Q ss_pred EEcCCCCChhHHHHhhhccCCCCCCCeEEEEecc-hhHHHHHHHHHHhCCCcccccC
Q 011901 416 IHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD-QQARQVKSIERDVGCRFTQVTS 471 (475)
Q Consensus 416 i~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~ 471 (475)
++||+|.+...|.||.||+||.|.+|.++.+.+. .+...+..++.-++..+.++|.
T Consensus 321 ~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpd 377 (387)
T KOG0329|consen 321 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPD 377 (387)
T ss_pred eccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCc
Confidence 9999999999999999999999999999998876 5566788888888888888874
No 54
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.4e-41 Score=345.09 Aligned_cols=316 Identities=22% Similarity=0.239 Sum_probs=234.0
Q ss_pred HHHHHH-cCCCCCcHHHHHhhhhHhcCC-cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEE-EcCCHHHHH
Q 011901 111 VAALAR-RGISKLFPIQKAVLEPAMQGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV-LAPTRELAK 187 (475)
Q Consensus 111 ~~~l~~-~~~~~l~~~Q~~~i~~i~~~~-~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~li-l~Pt~~La~ 187 (475)
.+.+.+ .|+. |+|+|.++++.++.|+ ++++++|||||||.++.++.+.. .. ....++.++ ++||++|+.
T Consensus 5 ~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~------~~~~~~rLv~~vPtReLa~ 76 (844)
T TIGR02621 5 DEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI------GAKVPRRLVYVVNRRTVVD 76 (844)
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc------cccccceEEEeCchHHHHH
Confidence 344444 5776 9999999999999998 58889999999998765554422 11 122455555 779999999
Q ss_pred HHHHHHHhhCC-------------------------CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCC-
Q 011901 188 QVEKEFHESAP-------------------------SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL- 241 (475)
Q Consensus 188 q~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~- 241 (475)
|+++.+.++.. ++++..++||.....+...+..+++|+|+|++.+ .++.+
T Consensus 77 Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i----~sr~L~ 152 (844)
T TIGR02621 77 QVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMI----GSRLLF 152 (844)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHH----cCCccc
Confidence 99999887764 3567778999999888888888999999996544 33333
Q ss_pred ---------------CCCCccEEEEecccccccCCchHHHHHHHHhC--CC---CCcEEEEccCCChhHHHHHHhhcCCC
Q 011901 242 ---------------NLSEVQFVVLDEADQMLSVGFAEDVEVILERL--PQ---NRQSMMFSATMPPWIRSLTNKYLKNP 301 (475)
Q Consensus 242 ---------------~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~--~~---~~~~i~~SAT~~~~~~~~~~~~~~~~ 301 (475)
.+++++++|+|||| ++.+|...+..+++.+ ++ ..|+++||||++..+..+...+..++
T Consensus 153 ~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p 230 (844)
T TIGR02621 153 SGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAED 230 (844)
T ss_pred cccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCC
Confidence 16789999999999 5677999999999964 33 26999999999988877777777666
Q ss_pred cEEEecCCCccccccCeeEEEEeccCccchHH-HHHHHHH-hccCCcEEEEecChhhHHHHHHHHHccCCcccccCCCCH
Q 011901 302 LTVDLVGDSDQKLADGISLYSIATSMYEKPSI-IGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQ 379 (475)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~h~~~~~ 379 (475)
..+.+.. .......+.++ +......+... +..+... ...++++||||++++.++.+++.|.+. ....+||+|++
T Consensus 231 ~~i~V~~--~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~-g~~lLHG~m~q 306 (844)
T TIGR02621 231 YKHPVLK--KRLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE-KFELLTGTLRG 306 (844)
T ss_pred ceeeccc--ccccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc-CCeEeeCCCCH
Confidence 6554422 11122222333 22222222222 2222111 135679999999999999999999754 34899999999
Q ss_pred HHHH-----HHHHHHhc----CC-------CcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCe-
Q 011901 380 SQRE-----RTLSAFRD----GR-------FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS- 442 (475)
Q Consensus 380 ~~r~-----~~~~~f~~----g~-------~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~- 442 (475)
.+|. .+++.|++ |. ..|||||+++++|+|++. ++||++.+| .+.|+||+||+||.|+.|.
T Consensus 307 ~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 307 AERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred HHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCc
Confidence 9999 78999987 44 689999999999999986 889887777 6899999999999987533
Q ss_pred EEEEe
Q 011901 443 AILIY 447 (475)
Q Consensus 443 ~~~~~ 447 (475)
.+.++
T Consensus 384 ~i~vv 388 (844)
T TIGR02621 384 QIAVV 388 (844)
T ss_pred eEEEE
Confidence 34444
No 55
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.2e-41 Score=327.32 Aligned_cols=328 Identities=24% Similarity=0.384 Sum_probs=252.2
Q ss_pred HHHHH-cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHH
Q 011901 112 AALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (475)
Q Consensus 112 ~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (475)
..|.. .|+..+++-|.++|..+++++|+++..|||+||+++|.+|++-. .+.+|+|.|..+|.+...
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------~G~TLVVSPLiSLM~DQV 74 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------------EGLTLVVSPLISLMKDQV 74 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------------CCCEEEECchHHHHHHHH
Confidence 44554 58999999999999999999999999999999999999998744 336999999999999999
Q ss_pred HHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCC--chH
Q 011901 191 KEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--FAE 264 (475)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~--~~~ 264 (475)
+.++.. ++.+..+.+..+..++.... .+..+++.-+|++|..--..+.+.-..+.+++|||||+++.|| |.+
T Consensus 75 ~~l~~~--Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP 152 (590)
T COG0514 75 DQLEAA--GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRP 152 (590)
T ss_pred HHHHHc--CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCH
Confidence 999988 46777776665555543333 2448999999999864322222224567889999999999997 666
Q ss_pred HHHH---HHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHH-H
Q 011901 265 DVEV---ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT-E 340 (475)
Q Consensus 265 ~~~~---i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~ 340 (475)
.+.. +...++ +..++.+|||.++.+.......+.......+....+.+. +.. .+......+.... .+.. .
T Consensus 153 ~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpN---i~~-~v~~~~~~~~q~~-fi~~~~ 226 (590)
T COG0514 153 DYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPN---LAL-KVVEKGEPSDQLA-FLATVL 226 (590)
T ss_pred hHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCch---hhh-hhhhcccHHHHHH-HHHhhc
Confidence 5554 445555 778999999999998877666554433222222222111 111 1111111122222 3322 1
Q ss_pred hccCCcEEEEecChhhHHHHHHHHHcc-CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcC
Q 011901 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYE 419 (475)
Q Consensus 341 ~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~ 419 (475)
...++..||||.|++.++.+++.|.+. +.+..+|++|+.++|+.+.+.|.+++.+|+|||.++++|||-|+++.||||+
T Consensus 227 ~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~ 306 (590)
T COG0514 227 PQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYD 306 (590)
T ss_pred cccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEec
Confidence 334556899999999999999999764 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHH
Q 011901 420 LPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459 (475)
Q Consensus 420 ~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~ 459 (475)
+|.|++.|.|-+|||||.|.++.|+++|++.|......+.
T Consensus 307 lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i 346 (590)
T COG0514 307 LPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLI 346 (590)
T ss_pred CCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHH
Confidence 9999999999999999999999999999998866544443
No 56
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3.1e-40 Score=333.78 Aligned_cols=315 Identities=19% Similarity=0.256 Sum_probs=229.2
Q ss_pred HHHHHhhhhHhcCCcEEEEcCCCCchhHH---------HHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHH
Q 011901 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLA---------FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 124 ~~Q~~~i~~i~~~~~~li~~~tGsGKT~~---------~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 194 (475)
.+|+++++.++++++++++|+||||||.+ |+.+.+..+.+.. ....+.++++++||++||.|+..++.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~---~~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID---PNFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc---cccCCcEEEEECcHHHHHHHHHHHHH
Confidence 46899999999999999999999999986 3333443332111 11235689999999999999999987
Q ss_pred hhC-----CCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHH
Q 011901 195 ESA-----PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (475)
Q Consensus 195 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i 269 (475)
+.. .+..+.+.+|+... ..........+|+|+|++... ..++++++||+||+|++...+ +.+..+
T Consensus 244 ~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~--DllL~l 313 (675)
T PHA02653 244 KSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIG--DIIIAV 313 (675)
T ss_pred HHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccch--hHHHHH
Confidence 643 24556778888763 211222235799999975311 247889999999999987653 555555
Q ss_pred HHhCC-CCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEecc----------CccchHHHHHHH
Q 011901 270 LERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS----------MYEKPSIIGQLI 338 (475)
Q Consensus 270 ~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~l~ 338 (475)
++... ..+|+++||||++.....+ ..++.++..+.+.+. ....+..++.... ...+...+..+.
T Consensus 314 lk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr----t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~ 388 (675)
T PHA02653 314 ARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG----TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALK 388 (675)
T ss_pred HHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC----cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHH
Confidence 55443 3459999999999887776 567778877765321 1223333333221 111222333333
Q ss_pred HHh-ccCCcEEEEecChhhHHHHHHHHHc---cCCcccccCCCCHHHHHHHHHHH-hcCCCcEEEecCccccCCCCCCCC
Q 011901 339 TEH-AKGGKCIVFTQTKRDADRLAHAMAK---SYNCEPLHGDISQSQRERTLSAF-RDGRFNILIATDVAARGLDVPNVD 413 (475)
Q Consensus 339 ~~~-~~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~~h~~~~~~~r~~~~~~f-~~g~~~vlvaT~~~~~Gidi~~~~ 413 (475)
... ..++++||||+++++++.+++.|.+ ++.+..+||++++. ++.+++| ++|+.+|||||+++++|+|+|+++
T Consensus 389 ~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~ 466 (675)
T PHA02653 389 KYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNAT 466 (675)
T ss_pred HhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCee
Confidence 222 2356899999999999999999975 37899999999975 4666777 689999999999999999999999
Q ss_pred EEEEcC---CCC---------ChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHH
Q 011901 414 LIIHYE---LPN---------TSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459 (475)
Q Consensus 414 ~vi~~~---~p~---------~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~ 459 (475)
+||++| .|. |.++|.||+||+||. ++|.|+.++++++...+..+.
T Consensus 467 ~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 467 HVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred EEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 999998 554 788999999999999 799999999988765444444
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.4e-39 Score=331.34 Aligned_cols=302 Identities=18% Similarity=0.280 Sum_probs=227.4
Q ss_pred HHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC-CC--c
Q 011901 125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SL--D 201 (475)
Q Consensus 125 ~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~-~~--~ 201 (475)
+-.+.+..+..+.+++++|+||||||.++.++++.... .+.+++++.||+++|.|+++.+.+... .+ .
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~ 76 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQT 76 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcE
Confidence 34456677777889999999999999999999987651 256899999999999999999865442 22 2
Q ss_pred eEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccc-ccccCCchHHH-HHHHHhCCCCCcE
Q 011901 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAEDV-EVILERLPQNRQS 279 (475)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H-~~~~~~~~~~~-~~i~~~~~~~~~~ 279 (475)
+.....+.. ....+.+|+|+|++.|.+.+... ..++++++||+||+| ++++.++.-.+ ..+...++++.|+
T Consensus 77 VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlql 149 (819)
T TIGR01970 77 VGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKI 149 (819)
T ss_pred EEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceE
Confidence 222222221 22345799999999999988764 468999999999999 56765555433 4555667888999
Q ss_pred EEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccch-----HHHHHHHHHhccCCcEEEEecCh
Q 011901 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP-----SIIGQLITEHAKGGKCIVFTQTK 354 (475)
Q Consensus 280 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~l~~~~~~~~~~lVf~~~~ 354 (475)
++||||++... ...++.++..+...+.. ..+..++......++. ..+..++.+ .++++||||++.
T Consensus 150 IlmSATl~~~~---l~~~l~~~~vI~~~gr~-----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~ 219 (819)
T TIGR01970 150 LAMSATLDGER---LSSLLPDAPVVESEGRS-----FPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQ 219 (819)
T ss_pred EEEeCCCCHHH---HHHHcCCCcEEEecCcc-----eeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCH
Confidence 99999998753 34566555555432211 1123333333222221 122333322 357999999999
Q ss_pred hhHHHHHHHHHc----cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCC--------
Q 011901 355 RDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN-------- 422 (475)
Q Consensus 355 ~~~~~l~~~L~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~-------- 422 (475)
++++.+++.|.+ ++.+..+||+|++++|.++++.|.+|+.+|||||+++++|+|||++++||+++.++
T Consensus 220 ~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~ 299 (819)
T TIGR01970 220 AEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKT 299 (819)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccccccc
Confidence 999999999975 47788999999999999999999999999999999999999999999999999875
Q ss_pred ----------ChhHHHHhhhccCCCCCCCeEEEEecchhHH
Q 011901 423 ----------TSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (475)
Q Consensus 423 ----------~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~ 453 (475)
|-++|.||+||+||. ++|.||.+|++.+..
T Consensus 300 g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 300 GITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred CCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 234689999999999 799999999987654
No 58
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=305.12 Aligned_cols=337 Identities=24% Similarity=0.345 Sum_probs=266.4
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhh-HhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCe
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 175 (475)
+....+++++++++...|...|+.+|.|.|.-+++. ++.|.|.++.++|+||||++.-++-+..+++ .|.+
T Consensus 192 ~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--------~g~K 263 (830)
T COG1202 192 ERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--------GGKK 263 (830)
T ss_pred ccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--------CCCe
Confidence 345577899999999999999999999999999987 6689999999999999999998888877755 4778
Q ss_pred EEEEcCCHHHHHHHHHHHHhhCCCCceE--EEEcCcchhHHHH----HhhcCCcEEEEccHHHHHHHHhCCCCCCCccEE
Q 011901 176 CLVLAPTRELAKQVEKEFHESAPSLDTI--CVYGGTPISHQMR----ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (475)
Q Consensus 176 ~lil~Pt~~La~q~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~v 249 (475)
.++++|..+||+|-+++|++.+..+... .-.|......... ....++||+|||++.+-.++..+ ..+.+++.|
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtV 342 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTV 342 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceE
Confidence 9999999999999999999887755533 3344433322211 12245899999999998888877 568999999
Q ss_pred EEecccccccCCchHHHHHHHH---hCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEecc
Q 011901 250 VLDEADQMLSVGFAEDVEVILE---RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (475)
Q Consensus 250 ViDE~H~~~~~~~~~~~~~i~~---~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (475)
||||+|.+.+...+..+.-++. .+-+..|+|++|||..++ ..++..+......+. .+...--.+..+..+
T Consensus 343 VIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~------~RPVplErHlvf~~~ 415 (830)
T COG1202 343 VIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD------ERPVPLERHLVFARN 415 (830)
T ss_pred EeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec------CCCCChhHeeeeecC
Confidence 9999999888666665555544 445689999999999765 556666655554442 111122223334455
Q ss_pred CccchHHHHHHHHHh-------ccCCcEEEEecChhhHHHHHHHHH-ccCCcccccCCCCHHHHHHHHHHHhcCCCcEEE
Q 011901 327 MYEKPSIIGQLITEH-------AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (475)
Q Consensus 327 ~~~~~~~l~~l~~~~-------~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 398 (475)
..+|..++..+.+.- ...+++|||++++..|+.++..|. ++++...+|++++..+|+.+...|.+++..++|
T Consensus 416 e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VV 495 (830)
T COG1202 416 ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVV 495 (830)
T ss_pred chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEe
Confidence 778888888887642 124799999999999999999996 569999999999999999999999999999999
Q ss_pred ecCccccCCCCCCCCEEE---EcCCCC-ChhHHHHhhhccCCCC--CCCeEEEEecc
Q 011901 399 ATDVAARGLDVPNVDLII---HYELPN-TSETFVHRTGRTGRAG--KKGSAILIYTD 449 (475)
Q Consensus 399 aT~~~~~Gidi~~~~~vi---~~~~p~-~~~~~~Q~~GR~gR~~--~~g~~~~~~~~ 449 (475)
+|-+++.|+|+|.-.+++ -++..| ++.+|.|+.|||||.+ ..|.++++..+
T Consensus 496 TTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 496 TTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred ehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 999999999998655443 245555 9999999999999965 46888888775
No 59
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.5e-38 Score=293.24 Aligned_cols=321 Identities=22% Similarity=0.267 Sum_probs=240.7
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC-
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~- 198 (475)
.+++.||......++.+ |.|++.|||-|||+++++-+...+.. ..+ ++|+++||+-|+.||++.+.+...
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~-------~~~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW-------FGG-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh-------cCC-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 46899999988888875 99999999999999998888777644 223 799999999999999999999863
Q ss_pred -CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCC
Q 011901 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (475)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~ 277 (475)
+..+..++|......+...+.. ..|+|+||+.+.+.+..+.+++.++.++|+|||||-.+..-...+...+-+-..++
T Consensus 85 p~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred ChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 4567778888776666555544 69999999999999999999999999999999999877655566666566666788
Q ss_pred cEEEEccCCChhHHH---HHHhhcCCCcEEEecCCCcccccc-CeeEE--------------------------------
Q 011901 278 QSMMFSATMPPWIRS---LTNKYLKNPLTVDLVGDSDQKLAD-GISLY-------------------------------- 321 (475)
Q Consensus 278 ~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------------------------- 321 (475)
.++++||||...... ...+..-....+....+.+..... .....
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 899999999755433 222221111111111110000000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 011901 322 -------------------------------------------------------------------------------- 321 (475)
Q Consensus 322 -------------------------------------------------------------------------------- 321 (475)
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence
Q ss_pred -----------------EEeccCccchHHHHHHHHHhc---cCCcEEEEecChhhHHHHHHHHHccCCcc--c-------
Q 011901 322 -----------------SIATSMYEKPSIIGQLITEHA---KGGKCIVFTQTKRDADRLAHAMAKSYNCE--P------- 372 (475)
Q Consensus 322 -----------------~~~~~~~~~~~~l~~l~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~--~------- 372 (475)
......+.|...+..++++.. .+.++|||+..++.++.+...|.+..... .
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r 403 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASR 403 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccc
Confidence 000011123344444544432 34699999999999999999997642221 1
Q ss_pred -ccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchh
Q 011901 373 -LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (475)
Q Consensus 373 -~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~ 451 (475)
...+|++.++.++++.|++|+++|||||++.++|+|+|.++.||.|++..|...++||.||+||. ++|.++++++...
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 13579999999999999999999999999999999999999999999999999999999999998 7899999998763
No 60
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=3.3e-38 Score=316.09 Aligned_cols=304 Identities=15% Similarity=0.172 Sum_probs=215.8
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC-
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~- 198 (475)
..|+++|.++++.++.+.+.++++|||+|||+++...+ ....+ ....++||++||++|+.||.+++.++..
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~-------~~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE-------NYEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh-------cCCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 57999999999999999999999999999998764432 22222 1133799999999999999999998753
Q ss_pred -CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCC
Q 011901 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (475)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~ 277 (475)
......+.+|.... .+.+|+|+|++.+.+... ..++++++||+||||++.. ..+..++..+++.+
T Consensus 185 ~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~~ 250 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG----KSLTSIITKLDNCK 250 (501)
T ss_pred cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc----hhHHHHHHhhhccc
Confidence 23333455554321 347999999999875432 2367899999999999854 45667777777778
Q ss_pred cEEEEccCCChhHHHHH--HhhcCCCcEEEecCCC--ccccccCeeEE--E---------------------EeccCccc
Q 011901 278 QSMMFSATMPPWIRSLT--NKYLKNPLTVDLVGDS--DQKLADGISLY--S---------------------IATSMYEK 330 (475)
Q Consensus 278 ~~i~~SAT~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~---------------------~~~~~~~~ 330 (475)
+++++||||........ ...++ +......... ........... . .......+
T Consensus 251 ~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~R 329 (501)
T PHA02558 251 FKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKR 329 (501)
T ss_pred eEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHH
Confidence 99999999965322111 11222 1111110000 00000000000 0 00111122
Q ss_pred hHHHHHHHHHh-ccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEec-CccccCC
Q 011901 331 PSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT-DVAARGL 407 (475)
Q Consensus 331 ~~~l~~l~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-~~~~~Gi 407 (475)
...+..++... ..+.+++|||.+.++++.+++.|.+ +.++..+||+++.++|..+++.|++|+..||||| +++++|+
T Consensus 330 n~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~ 409 (501)
T PHA02558 330 NKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGI 409 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccc
Confidence 33333343333 3567899999999999999999975 5789999999999999999999999999999999 8999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCe-EEEE
Q 011901 408 DVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS-AILI 446 (475)
Q Consensus 408 di~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~-~~~~ 446 (475)
|+|++++||++.++.+...|+||+||++|.+..+. |.++
T Consensus 410 Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 410 SIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred ccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 99999999999999999999999999999765443 4433
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=4.7e-39 Score=312.09 Aligned_cols=301 Identities=19% Similarity=0.234 Sum_probs=211.0
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhH----
Q 011901 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH---- 213 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~---- 213 (475)
++++.+|||||||.+|+++++..+.+ ..+.++++++|+++|+.|+++.+...+.. .+...+++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~ 72 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-------QKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEM 72 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-------CCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhcc
Confidence 47999999999999999999977643 33568999999999999999999998643 3343444322100
Q ss_pred -------H-HHHh------hcCCcEEEEccHHHHHHHHhCC----CC--CCCccEEEEecccccccCCchHHHHHHHHhC
Q 011901 214 -------Q-MRAL------DYGVDAVVGTPGRVIDLIKRNA----LN--LSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (475)
Q Consensus 214 -------~-~~~~------~~~~~Ilv~T~~~l~~~l~~~~----~~--~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~ 273 (475)
. .... ....+|+|+||+.+...+..+. .. .-..+++|+||+|.+.+.++.. +..++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l 151 (358)
T TIGR01587 73 GDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVL 151 (358)
T ss_pred CCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHH
Confidence 0 0000 0236899999999988766521 11 1123789999999998764433 55555544
Q ss_pred C-CCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEec
Q 011901 274 P-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQ 352 (475)
Q Consensus 274 ~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~ 352 (475)
. .+.|+++||||++..+..+.......+........ ...................+...+..+++....+++++|||+
T Consensus 152 ~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~ 230 (358)
T TIGR01587 152 KDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK-EERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVN 230 (358)
T ss_pred HHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc-cccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEEC
Confidence 3 46899999999997766666554332211111000 000000111111122223456667777776667889999999
Q ss_pred ChhhHHHHHHHHHccC---CcccccCCCCHHHHHHH----HHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChh
Q 011901 353 TKRDADRLAHAMAKSY---NCEPLHGDISQSQRERT----LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSE 425 (475)
Q Consensus 353 ~~~~~~~l~~~L~~~~---~~~~~h~~~~~~~r~~~----~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~ 425 (475)
+++.++.+++.|.+.. .+..+||++++.+|.++ ++.|++|+.+|||||+++++|+|++ ++.||++..| ..
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~ 307 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--ID 307 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HH
Confidence 9999999999997642 48899999999999764 8899999999999999999999995 8889988766 78
Q ss_pred HHHHhhhccCCCCCC----CeEEEEecchh
Q 011901 426 TFVHRTGRTGRAGKK----GSAILIYTDQQ 451 (475)
Q Consensus 426 ~~~Q~~GR~gR~~~~----g~~~~~~~~~~ 451 (475)
.|+||+||+||.|+. |.++++....+
T Consensus 308 ~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 308 SLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 999999999998754 35666665443
No 62
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=5.8e-38 Score=335.53 Aligned_cols=287 Identities=23% Similarity=0.365 Sum_probs=214.0
Q ss_pred HHHHHHHc-CCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHH
Q 011901 110 IVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (475)
Q Consensus 110 l~~~l~~~-~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q 188 (475)
..+.+.+. |+ +||++|..+++.++.|+++++++|||||||. |.++++..+.. .+.+++|++||++|+.|
T Consensus 69 ~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--------~g~~alIL~PTreLa~Q 138 (1176)
T PRK09401 69 FEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--------KGKKSYIIFPTRLLVEQ 138 (1176)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeccHHHHHH
Confidence 34455554 55 7999999999999999999999999999996 54555444321 37789999999999999
Q ss_pred HHHHHHhhCCCC--ceEEEEcCcch-----hHHHHHhh-cCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccc-
Q 011901 189 VEKEFHESAPSL--DTICVYGGTPI-----SHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS- 259 (475)
Q Consensus 189 ~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~- 259 (475)
+++.+++++... .+..++++... ......+. ++++|+|+||+.|.+.+. .+....++++|+||||++++
T Consensus 139 i~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~ 216 (1176)
T PRK09401 139 VVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKS 216 (1176)
T ss_pred HHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhc
Confidence 999999987643 44455555432 11222333 458999999999998876 34556799999999999986
Q ss_pred ----------CCch-HHHHHHHHhCCC------------------------CCcEEEEccCCChh-HHHHHHhhcCCCcE
Q 011901 260 ----------VGFA-EDVEVILERLPQ------------------------NRQSMMFSATMPPW-IRSLTNKYLKNPLT 303 (475)
Q Consensus 260 ----------~~~~-~~~~~i~~~~~~------------------------~~~~i~~SAT~~~~-~~~~~~~~~~~~~~ 303 (475)
.||. ..+..++..++. ..|++++|||+++. ... ..+.++..
T Consensus 217 ~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~ 293 (1176)
T PRK09401 217 SKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLG 293 (1176)
T ss_pred ccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccce
Confidence 4564 567777766654 68999999999874 322 22233333
Q ss_pred EEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhh---HHHHHHHHHc-cCCcccccCCCCH
Q 011901 304 VDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRD---ADRLAHAMAK-SYNCEPLHGDISQ 379 (475)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~---~~~l~~~L~~-~~~~~~~h~~~~~ 379 (475)
+.+... .....++.+.++... ++...+..+++.. +.++||||++... ++.+++.|.. ++++..+||+|
T Consensus 294 ~~v~~~--~~~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-- 365 (1176)
T PRK09401 294 FEVGSP--VFYLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-- 365 (1176)
T ss_pred EEecCc--ccccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH--
Confidence 433221 223344454444433 5666777777655 3589999999877 9999999975 59999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEe----cCccccCCCCCC-CCEEEEcCCCC
Q 011901 380 SQRERTLSAFRDGRFNILIA----TDVAARGLDVPN-VDLIIHYELPN 422 (475)
Q Consensus 380 ~~r~~~~~~f~~g~~~vlva----T~~~~~Gidi~~-~~~vi~~~~p~ 422 (475)
++.++.|++|+++|||| |++++||+|+|+ +++|||||.|.
T Consensus 366 ---~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 366 ---ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred ---HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 23459999999999999 689999999999 89999999997
No 63
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.5e-38 Score=327.16 Aligned_cols=302 Identities=21% Similarity=0.299 Sum_probs=224.1
Q ss_pred HHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC-CC--Cc
Q 011901 125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-PS--LD 201 (475)
Q Consensus 125 ~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~-~~--~~ 201 (475)
+-.+.+..+.++++++++|+||||||.++.+++++... .+.++++++||+++|.|+++.+.+.. .. ..
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~---------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG---------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC---------cCCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 33456667777889999999999999999988886531 13479999999999999999986543 22 23
Q ss_pred eEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccc-cccCCch-HHHHHHHHhCCCCCcE
Q 011901 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFA-EDVEVILERLPQNRQS 279 (475)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~-~~~~~~~-~~~~~i~~~~~~~~~~ 279 (475)
+....++... ......|+|+|++.|.+.+... ..++++++||+||+|. ..+.++. ..+..+++.++++.|+
T Consensus 80 VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lql 152 (812)
T PRK11664 80 VGYRMRAESK------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKL 152 (812)
T ss_pred EEEEecCccc------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceE
Confidence 3333333321 2234689999999999988764 4689999999999996 3443322 2234556677888999
Q ss_pred EEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchH-----HHHHHHHHhccCCcEEEEecCh
Q 011901 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS-----IIGQLITEHAKGGKCIVFTQTK 354 (475)
Q Consensus 280 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~l~~~~~~~~~~lVf~~~~ 354 (475)
++||||++.. .+ ..++.++..+...+.. ..+..++......++.. .+..++.+ .++.+||||++.
T Consensus 153 ilmSATl~~~--~l-~~~~~~~~~I~~~gr~-----~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~ 222 (812)
T PRK11664 153 LIMSATLDND--RL-QQLLPDAPVIVSEGRS-----FPVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSLLLFLPGV 222 (812)
T ss_pred EEEecCCCHH--HH-HHhcCCCCEEEecCcc-----ccceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEcCCH
Confidence 9999999874 23 4556555555432221 12333333332222221 22233322 357999999999
Q ss_pred hhHHHHHHHHHc----cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCC--------
Q 011901 355 RDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN-------- 422 (475)
Q Consensus 355 ~~~~~l~~~L~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~-------- 422 (475)
++++.+++.|.+ ++.+..+||+|++++|.+++..|.+|+.+|||||+++++|+|||++++||+++.++
T Consensus 223 ~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~ 302 (812)
T PRK11664 223 GEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKT 302 (812)
T ss_pred HHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccC
Confidence 999999999975 46788899999999999999999999999999999999999999999999988764
Q ss_pred ----------ChhHHHHhhhccCCCCCCCeEEEEecchhHH
Q 011901 423 ----------TSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (475)
Q Consensus 423 ----------~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~ 453 (475)
|-++|.||.||+||. .+|.||.+|++.+..
T Consensus 303 g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 303 GLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred CcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 235799999999999 699999999987554
No 64
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=8.7e-38 Score=320.14 Aligned_cols=332 Identities=21% Similarity=0.315 Sum_probs=252.3
Q ss_pred CCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhc-CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcC
Q 011901 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (475)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~-~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~P 181 (475)
...+++.+.+.+...++.++.+.|+.++..... +.|+++++|||||||+++++.++..+.+. +.+++++||
T Consensus 13 ~~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--------~~k~vYivP 84 (766)
T COG1204 13 KVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--------GGKVVYIVP 84 (766)
T ss_pred cccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--------CCcEEEEeC
Confidence 345788899999999998899999888887664 59999999999999999999999998762 577999999
Q ss_pred CHHHHHHHHHHHHhhC-CCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccC
Q 011901 182 TRELAKQVEKEFHESA-PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (475)
Q Consensus 182 t~~La~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~ 260 (475)
+++||++.+++++++- -++++...+|+...... .-.+++|+|+||+++..+..+.......+++||+||+|.+.+.
T Consensus 85 lkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~ 161 (766)
T COG1204 85 LKALAEEKYEEFSRLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDR 161 (766)
T ss_pred hHHHHHHHHHHhhhHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCc
Confidence 9999999999999321 27888888888875542 2345899999999999999887777889999999999998887
Q ss_pred CchHHHHHHHHhCCC---CCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccC-------ccc
Q 011901 261 GFAEDVEVILERLPQ---NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM-------YEK 330 (475)
Q Consensus 261 ~~~~~~~~i~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 330 (475)
..+..+..+..+... ..+++++|||+++. ..++.....++. ..........-............. ...
T Consensus 162 ~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~ 239 (766)
T COG1204 162 TRGPVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLID 239 (766)
T ss_pred ccCceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccch
Confidence 677777777666543 47999999999884 333333333322 222111111111111111111121 123
Q ss_pred hHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc--------------------------------------cCCccc
Q 011901 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK--------------------------------------SYNCEP 372 (475)
Q Consensus 331 ~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~--------------------------------------~~~~~~ 372 (475)
...+...+..+..+++++|||+++..+...+..+.+ ..++..
T Consensus 240 ~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gvaf 319 (766)
T COG1204 240 NLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAF 319 (766)
T ss_pred HHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccc
Confidence 556666777788899999999999999988888862 123557
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEE----EcC-----CCCChhHHHHhhhccCCCC--CCC
Q 011901 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLII----HYE-----LPNTSETFVHRTGRTGRAG--KKG 441 (475)
Q Consensus 373 ~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi----~~~-----~p~~~~~~~Q~~GR~gR~~--~~g 441 (475)
+|.+++.++|..+.+.|++|.++||+||+.++.|+|.|.-.+|| -|+ .+.+..++.|+.|||||.| ..|
T Consensus 320 HhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G 399 (766)
T COG1204 320 HHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYG 399 (766)
T ss_pred cccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCC
Confidence 89999999999999999999999999999999999999766666 344 3347889999999999976 346
Q ss_pred eEEEEe
Q 011901 442 SAILIY 447 (475)
Q Consensus 442 ~~~~~~ 447 (475)
.++++.
T Consensus 400 ~~~i~~ 405 (766)
T COG1204 400 EAIILA 405 (766)
T ss_pred cEEEEe
Confidence 666666
No 65
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=323.88 Aligned_cols=332 Identities=23% Similarity=0.382 Sum_probs=257.0
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHH
Q 011901 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (475)
Q Consensus 107 ~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La 186 (475)
...+..++.+.|+..|++||.+|+..+.+|+|++|..+||||||.+|++|++.++.+ +...++|++.||++||
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~-------~~~a~AL~lYPtnALa 128 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLR-------DPSARALLLYPTNALA 128 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhh-------CcCccEEEEechhhhH
Confidence 445688899999999999999999999999999999999999999999999999987 3344789999999999
Q ss_pred HHHHHHHHhhCCCC----ceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCC----CCCCCccEEEEecccccc
Q 011901 187 KQVEKEFHESAPSL----DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA----LNLSEVQFVVLDEADQML 258 (475)
Q Consensus 187 ~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~----~~~~~~~~vViDE~H~~~ 258 (475)
+.+.+.+.++...+ .....+|..+..+......+.++|++|||+||..++.+.. +.++++++||+||+|.+-
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 99999998876433 3444556666666557778889999999999998665543 347789999999999988
Q ss_pred cCCchHHHHHHHHhC-------CCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEecc-----
Q 011901 259 SVGFAEDVEVILERL-------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS----- 326 (475)
Q Consensus 259 ~~~~~~~~~~i~~~~-------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 326 (475)
+. |+..+..+++++ +.+.|+|++|||.... ..+...+.+......+..+. .......+.....
T Consensus 209 Gv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g---~~~~~~~~~~~~p~~~~~ 283 (851)
T COG1205 209 GV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDG---SPRGLRYFVRREPPIREL 283 (851)
T ss_pred cc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCC---CCCCceEEEEeCCcchhh
Confidence 87 788777776665 4578999999999776 44445555444444221111 1111122222111
Q ss_pred ----CccchHHHHHHHH-HhccCCcEEEEecChhhHHHHHH----HH-Hcc----CCcccccCCCCHHHHHHHHHHHhcC
Q 011901 327 ----MYEKPSIIGQLIT-EHAKGGKCIVFTQTKRDADRLAH----AM-AKS----YNCEPLHGDISQSQRERTLSAFRDG 392 (475)
Q Consensus 327 ----~~~~~~~l~~l~~-~~~~~~~~lVf~~~~~~~~~l~~----~L-~~~----~~~~~~h~~~~~~~r~~~~~~f~~g 392 (475)
...+...+..+.. ...++-++++|+.++..++.+.. .+ ..+ ..+..++++|..++|.++...|+.|
T Consensus 284 ~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g 363 (851)
T COG1205 284 AESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG 363 (851)
T ss_pred hhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC
Confidence 1122223333332 23467899999999999998862 22 222 3577889999999999999999999
Q ss_pred CCcEEEecCccccCCCCCCCCEEEEcCCCC-ChhHHHHhhhccCCCCCCCeEEEEecch
Q 011901 393 RFNILIATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (475)
Q Consensus 393 ~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~-~~~~~~Q~~GR~gR~~~~g~~~~~~~~~ 450 (475)
+..++++|++++.|+|+..++.||..+.|. +..++.|+.||+||.++.+..+.+...+
T Consensus 364 ~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 364 ELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred CccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 999999999999999999999999999999 9999999999999998888877777743
No 66
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=6e-37 Score=334.23 Aligned_cols=328 Identities=17% Similarity=0.251 Sum_probs=243.0
Q ss_pred HHHHHHHHH-cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHH
Q 011901 108 QDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (475)
Q Consensus 108 ~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La 186 (475)
.++.+.|.+ .|+ +||++|+++++.++.|+++++++|||||||+.++++++... ..+.+++|++||++|+
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~---------~~g~~aLVl~PTreLa 135 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA---------LKGKKCYIILPTTLLV 135 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH---------hcCCeEEEEECHHHHH
Confidence 445566666 688 69999999999999999999999999999996665554432 1367899999999999
Q ss_pred HHHHHHHHhhCCC----CceEEEEcCcchhHHHH---Hhh-cCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011901 187 KQVEKEFHESAPS----LDTICVYGGTPISHQMR---ALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 187 ~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~ 258 (475)
.|+++.++.++.. ..+..++|+.+...+.. .+. +.++|+|+||+.|.+.+... . ..+++++|+||||+|+
T Consensus 136 ~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 136 KQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceecc
Confidence 9999999987643 34556778777655432 233 35999999999998776542 1 2679999999999998
Q ss_pred c-----------CCchHHHHH----HHH----------------------hCCCCCc-EEEEccCCChhHHHHHHhhcCC
Q 011901 259 S-----------VGFAEDVEV----ILE----------------------RLPQNRQ-SMMFSATMPPWIRSLTNKYLKN 300 (475)
Q Consensus 259 ~-----------~~~~~~~~~----i~~----------------------~~~~~~~-~i~~SAT~~~~~~~~~~~~~~~ 300 (475)
+ .||..++.. ++. .+++..| .+++|||.++... ....+.+
T Consensus 214 ~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~ 291 (1638)
T PRK14701 214 KASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRE 291 (1638)
T ss_pred ccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhc
Confidence 6 367666653 321 2344555 5779999987421 2233455
Q ss_pred CcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhh---HHHHHHHHHc-cCCcccccCC
Q 011901 301 PLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRD---ADRLAHAMAK-SYNCEPLHGD 376 (475)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~---~~~l~~~L~~-~~~~~~~h~~ 376 (475)
+..+.+. ........+.+.++......+ ..+..+++.. +.++||||++.+. ++.+++.|.+ ++++..+||+
T Consensus 292 ~l~f~v~--~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~ 366 (1638)
T PRK14701 292 LLGFEVG--SGRSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK 366 (1638)
T ss_pred CeEEEec--CCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch
Confidence 5555442 223344455555544433333 4566666654 4689999999875 5889999975 6899999985
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEec----CccccCCCCCC-CCEEEEcCCCC---ChhHHHHhh-------------hccC
Q 011901 377 ISQSQRERTLSAFRDGRFNILIAT----DVAARGLDVPN-VDLIIHYELPN---TSETFVHRT-------------GRTG 435 (475)
Q Consensus 377 ~~~~~r~~~~~~f~~g~~~vlvaT----~~~~~Gidi~~-~~~vi~~~~p~---~~~~~~Q~~-------------GR~g 435 (475)
|..+++.|++|+++||||| ++++||||+|+ +++|||+|.|. +...|.|.. ||+|
T Consensus 367 -----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~ 441 (1638)
T PRK14701 367 -----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEEL 441 (1638)
T ss_pred -----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhc
Confidence 8899999999999999999 58999999998 99999999999 887776665 9999
Q ss_pred CCCCCCeEEEEecchhHHHHHHHH
Q 011901 436 RAGKKGSAILIYTDQQARQVKSIE 459 (475)
Q Consensus 436 R~~~~g~~~~~~~~~~~~~~~~i~ 459 (475)
|.|.++.+++.+...+...++.+-
T Consensus 442 ~~g~~~~~~~~~~~~~~~~~~~~l 465 (1638)
T PRK14701 442 KEGIPIEGVLDVFPEDVEFLRSIL 465 (1638)
T ss_pred ccCCcchhHHHhHHHHHHHHHHHh
Confidence 999998888766666655555443
No 67
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=8.7e-36 Score=319.34 Aligned_cols=290 Identities=21% Similarity=0.342 Sum_probs=210.9
Q ss_pred HHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHH
Q 011901 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (475)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (475)
.++.+.+.+....+|+++|+.+++.++.|+++++++|||||||. |.++++..+.. .+++++|++||++|+.
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--------~g~~vLIL~PTreLa~ 135 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--------KGKRCYIILPTTLLVI 135 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeCHHHHHH
Confidence 44556666655568999999999999999999999999999996 65666555432 2678999999999999
Q ss_pred HHHHHHHhhCCCC--ceE---EEEcCcchhHHHH---Hhh-cCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011901 188 QVEKEFHESAPSL--DTI---CVYGGTPISHQMR---ALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 188 q~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~---~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~ 258 (475)
|+++.+++++... ... .++|+.+...+.. .+. ++++|+|+||+.|.+.+..-. . +++++|+||||+|+
T Consensus 136 Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 136 QVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALL 212 (1171)
T ss_pred HHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhh
Confidence 9999999887533 222 3567766554322 223 459999999999998776521 2 89999999999998
Q ss_pred c-----------CCchHH-HHHHH----------------------HhCCCCCc--EEEEccCCCh-hHHHHHHhhcCCC
Q 011901 259 S-----------VGFAED-VEVIL----------------------ERLPQNRQ--SMMFSATMPP-WIRSLTNKYLKNP 301 (475)
Q Consensus 259 ~-----------~~~~~~-~~~i~----------------------~~~~~~~~--~i~~SAT~~~-~~~~~~~~~~~~~ 301 (475)
+ .||..+ +..++ +.+++..| ++++|||..+ ... ..++.+.
T Consensus 213 ~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~l 289 (1171)
T TIGR01054 213 KASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKLFREL 289 (1171)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHHcccc
Confidence 7 466653 44432 23344444 5678999543 322 2234444
Q ss_pred cEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecCh---hhHHHHHHHHHc-cCCcccccCCC
Q 011901 302 LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTK---RDADRLAHAMAK-SYNCEPLHGDI 377 (475)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~---~~~~~l~~~L~~-~~~~~~~h~~~ 377 (475)
..+.+.. ......++.+.+..... +...+..+++.. +.++||||++. +.++.+++.|.+ ++++..+||++
T Consensus 290 l~~~v~~--~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~ 363 (1171)
T TIGR01054 290 LGFEVGG--GSDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATK 363 (1171)
T ss_pred cceEecC--ccccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCC
Confidence 4444322 12233444444443322 234566666654 46899999999 999999999975 58899999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEec----CccccCCCCCC-CCEEEEcCCCC
Q 011901 378 SQSQRERTLSAFRDGRFNILIAT----DVAARGLDVPN-VDLIIHYELPN 422 (475)
Q Consensus 378 ~~~~r~~~~~~f~~g~~~vlvaT----~~~~~Gidi~~-~~~vi~~~~p~ 422 (475)
+. .+++.|++|+++||||| ++++||+|+|+ +++||++|.|.
T Consensus 364 ~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 364 PK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred CH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 73 68999999999999994 89999999999 89999998874
No 68
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.4e-36 Score=297.56 Aligned_cols=315 Identities=21% Similarity=0.232 Sum_probs=235.6
Q ss_pred cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.|. .|+++|..+++.++.|+ +..+.||+|||++|.+|++..... |++++|++||++||.|.++++..+
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---------G~~v~VvTptreLA~qdae~~~~l 167 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---------GLPVHVITVNDYLAERDAELMRPL 167 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---------CCeEEEEcCcHHHHHHHHHHHHHH
Confidence 354 59999999999999998 999999999999999999987643 788999999999999999999987
Q ss_pred CC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHH-HHHHHhCC-------------------------CCCCCccE
Q 011901 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA-------------------------LNLSEVQF 248 (475)
Q Consensus 197 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~-------------------------~~~~~~~~ 248 (475)
+. ++++.+++|+.+.. .+....+++|++||...| .+++..+. .....+.+
T Consensus 168 ~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 168 YEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred HhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 64 67788888887543 344556799999999887 44443321 11356889
Q ss_pred EEEecccccc-cC----------C-------chHHHHHHHHhC-------------------------------------
Q 011901 249 VVLDEADQML-SV----------G-------FAEDVEVILERL------------------------------------- 273 (475)
Q Consensus 249 vViDE~H~~~-~~----------~-------~~~~~~~i~~~~------------------------------------- 273 (475)
.||||+|.++ +. . .......+...+
T Consensus 246 aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~ 325 (656)
T PRK12898 246 AIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWR 325 (656)
T ss_pred eEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcc
Confidence 9999999753 10 0 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 011901 274 -------------------------------------------------------------------------------- 273 (475)
Q Consensus 274 -------------------------------------------------------------------------------- 273 (475)
T Consensus 326 ~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~F 405 (656)
T PRK12898 326 GAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFF 405 (656)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHH
Confidence
Q ss_pred CCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHh-ccCCcEEEEec
Q 011901 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH-AKGGKCIVFTQ 352 (475)
Q Consensus 274 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lVf~~ 352 (475)
..-..+.+||||.+.....+...|..++..+....+. ........+..+..+|...+...+.+. ..+.++||||+
T Consensus 406 r~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~----~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~ 481 (656)
T PRK12898 406 RRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS----QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTR 481 (656)
T ss_pred HhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc----cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0002457899999888778888887776555322111 111222233345556777777777664 34678999999
Q ss_pred ChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCC---CCC-----EEEEcCCCCC
Q 011901 353 TKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP---NVD-----LIIHYELPNT 423 (475)
Q Consensus 353 ~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~---~~~-----~vi~~~~p~~ 423 (475)
+++.++.++..|.+ ++++..+||+++ +++..+..|..+...|+|||+++++|+||+ ++. +||+++.|.+
T Consensus 482 t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s 559 (656)
T PRK12898 482 SVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDS 559 (656)
T ss_pred cHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCC
Confidence 99999999999975 589999999865 455555566666667999999999999999 665 9999999999
Q ss_pred hhHHHHhhhccCCCCCCCeEEEEecchh
Q 011901 424 SETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (475)
Q Consensus 424 ~~~~~Q~~GR~gR~~~~g~~~~~~~~~~ 451 (475)
...|.||+||+||.|.+|.++++++.+|
T Consensus 560 ~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 560 ARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred HHHHHHhcccccCCCCCeEEEEEechhH
Confidence 9999999999999999999999999765
No 69
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=4.2e-37 Score=279.58 Aligned_cols=297 Identities=32% Similarity=0.521 Sum_probs=226.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhhC-----CCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCC
Q 011901 171 GRNPLCLVLAPTRELAKQVEKEFHESA-----PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSE 245 (475)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~ 245 (475)
.+.++++|+-|.++|++|.++.++++- |.++..++.||.....+...+.++.+|+|+||+++.+.+..+.+.+..
T Consensus 284 pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~ 363 (725)
T KOG0349|consen 284 PNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTH 363 (725)
T ss_pred CCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeee
Confidence 456889999999999999999666543 233555778888888888889999999999999999999999999999
Q ss_pred ccEEEEecccccccCCchHHHHHHHHhCCC------CCcEEEEccCCCh-hHHHHHHhhcCCCcEEEecCCCccccccCe
Q 011901 246 VQFVVLDEADQMLSVGFAEDVEVILERLPQ------NRQSMMFSATMPP-WIRSLTNKYLKNPLTVDLVGDSDQKLADGI 318 (475)
Q Consensus 246 ~~~vViDE~H~~~~~~~~~~~~~i~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (475)
..++|+||++.++..++.+.+.++...++. ..|.++.|||+.. ++..+....+.-|.-+.+.+. +.+++..
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkge--D~vpetv 441 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGE--DLVPETV 441 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccc--cccchhh
Confidence 999999999999998898988888888763 4688999999843 233344444444444443222 1122211
Q ss_pred eEEEEeccC------------------c------------c---------chHHHHHHHHHhccCCcEEEEecChhhHHH
Q 011901 319 SLYSIATSM------------------Y------------E---------KPSIIGQLITEHAKGGKCIVFTQTKRDADR 359 (475)
Q Consensus 319 ~~~~~~~~~------------------~------------~---------~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~ 359 (475)
..+...... . + |.+.-...++++. -.++||||.++..++.
T Consensus 442 Hhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~-mdkaiifcrtk~dcDn 520 (725)
T KOG0349|consen 442 HHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHA-MDKAIIFCRTKQDCDN 520 (725)
T ss_pred ccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhc-cCceEEEEeccccchH
Confidence 111111000 0 0 0011111233332 3589999999999999
Q ss_pred HHHHHHc----cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccC
Q 011901 360 LAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTG 435 (475)
Q Consensus 360 l~~~L~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~g 435 (475)
+..++.+ .+.|.++||+..+.+|+..++.|+.+.++.||||+++++|+||.++-.||++..|..-..|+||+||+|
T Consensus 521 Ler~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvg 600 (725)
T KOG0349|consen 521 LERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVG 600 (725)
T ss_pred HHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccc
Confidence 9999975 378999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEecch--------------------------------hHHHHHHHHHHhCCCccccc
Q 011901 436 RAGKKGSAILIYTDQ--------------------------------QARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 436 R~~~~g~~~~~~~~~--------------------------------~~~~~~~i~~~~~~~~~~~~ 470 (475)
|+.+-|.++.+.... +...+..++.-+++++.++.
T Consensus 601 raermglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~ 667 (725)
T KOG0349|consen 601 RAERMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVD 667 (725)
T ss_pred hhhhcceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeC
Confidence 998888888765432 23456777777777777653
No 70
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=8.9e-35 Score=308.60 Aligned_cols=324 Identities=21% Similarity=0.286 Sum_probs=235.7
Q ss_pred CCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
+..++++||.++...++.+ +.++++|||+|||+++++++...+. ..+.++||++||++|+.|+.+.+++++
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 82 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--------KKGGKVLILAPTKPLVEQHAEFFRKFL 82 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--------hCCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 3357999999999988886 9999999999999999888887662 235689999999999999999999876
Q ss_pred CC--CceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCC
Q 011901 198 PS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (475)
Q Consensus 198 ~~--~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~ 275 (475)
.. ..+..++|+...... .....+.+|+|+||+.+...+..+.+.+.++++||+||||++.+......+...+....+
T Consensus 83 ~~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~ 161 (773)
T PRK13766 83 NIPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAK 161 (773)
T ss_pred CCCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCC
Confidence 32 356666776655443 334445799999999998888777788899999999999998765433444444444556
Q ss_pred CCcEEEEccCCChhHHH---HHHhhcCCCcEE------------------EecCCCccc---------------------
Q 011901 276 NRQSMMFSATMPPWIRS---LTNKYLKNPLTV------------------DLVGDSDQK--------------------- 313 (475)
Q Consensus 276 ~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~------------------~~~~~~~~~--------------------- 313 (475)
.+.+++|||||...... ...+.......+ .+.......
T Consensus 162 ~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~ 241 (773)
T PRK13766 162 NPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKE 241 (773)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999998533211 111111000000 000000000
Q ss_pred --cc--------------------cCee------------------------------------------E---------
Q 011901 314 --LA--------------------DGIS------------------------------------------L--------- 320 (475)
Q Consensus 314 --~~--------------------~~~~------------------------------------------~--------- 320 (475)
.. ..+. .
T Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~ 321 (773)
T PRK13766 242 LGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSK 321 (773)
T ss_pred CCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcH
Confidence 00 0000 0
Q ss_pred -----------------EEEeccCccchHHHHHHHHHh---ccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCC---
Q 011901 321 -----------------YSIATSMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGD--- 376 (475)
Q Consensus 321 -----------------~~~~~~~~~~~~~l~~l~~~~---~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~--- 376 (475)
.........|...+..++++. ..++++||||++.+.++.+.+.|.+ ++.+..+||.
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~ 401 (773)
T PRK13766 322 ASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASK 401 (773)
T ss_pred HHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccc
Confidence 000011123444555555543 3578999999999999999999954 5777788876
Q ss_pred -----CCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchh
Q 011901 377 -----ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (475)
Q Consensus 377 -----~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~ 451 (475)
|++.+|..+++.|++|+.++||||+++++|+|+|++++||+||+|++...|+||+||+||.|. |.++++++.+.
T Consensus 402 ~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 402 DGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred cccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999864 88888887544
Q ss_pred H
Q 011901 452 A 452 (475)
Q Consensus 452 ~ 452 (475)
.
T Consensus 481 ~ 481 (773)
T PRK13766 481 R 481 (773)
T ss_pred h
Confidence 3
No 71
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=6.7e-36 Score=294.79 Aligned_cols=332 Identities=23% Similarity=0.324 Sum_probs=237.6
Q ss_pred CCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
....|+.||.+....++ ++|+++++|||+|||+++...++.++.. ....++++++|++-|+.|+...+..++
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw-------~p~~KiVF~aP~~pLv~QQ~a~~~~~~ 130 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW-------RPKGKVVFLAPTRPLVNQQIACFSIYL 130 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc-------CCcceEEEeeCCchHHHHHHHHHhhcc
Confidence 33579999999999999 9999999999999999998888888744 335789999999999999998888887
Q ss_pred CCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCC-CCCccEEEEecccccccCC-chHHHHHHHHhCCC
Q 011901 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN-LSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQ 275 (475)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~-~~~~~~vViDE~H~~~~~~-~~~~~~~i~~~~~~ 275 (475)
-+.+.....|+.........+-...+|+|+||+.+.+.+..+... ++.+.++|+||||+..... +...+...+.....
T Consensus 131 ~~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~ 210 (746)
T KOG0354|consen 131 IPYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQ 210 (746)
T ss_pred CcccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhc
Confidence 666666666664444444455566899999999999988876543 5889999999999977654 44444466666655
Q ss_pred CCcEEEEccCCChhHHHHHHhhcC--------------------------------------------------------
Q 011901 276 NRQSMMFSATMPPWIRSLTNKYLK-------------------------------------------------------- 299 (475)
Q Consensus 276 ~~~~i~~SAT~~~~~~~~~~~~~~-------------------------------------------------------- 299 (475)
..|++++||||.............
T Consensus 211 ~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~ 290 (746)
T KOG0354|consen 211 GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEG 290 (746)
T ss_pred cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcC
Confidence 669999999996433222111100
Q ss_pred -----CCcEE-E--ec---------CCCccc--c--------------ccCee---------------------------
Q 011901 300 -----NPLTV-D--LV---------GDSDQK--L--------------ADGIS--------------------------- 319 (475)
Q Consensus 300 -----~~~~~-~--~~---------~~~~~~--~--------------~~~~~--------------------------- 319 (475)
+.... . .. ....+. . ...+.
T Consensus 291 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~ 370 (746)
T KOG0354|consen 291 LIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEA 370 (746)
T ss_pred ccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcc
Confidence 00000 0 00 000000 0 00000
Q ss_pred --------------EE-EEeccCccchHHHHHHHHHh---ccCCcEEEEecChhhHHHHHHHHHcc----CCcccc----
Q 011901 320 --------------LY-SIATSMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAKS----YNCEPL---- 373 (475)
Q Consensus 320 --------------~~-~~~~~~~~~~~~l~~l~~~~---~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~---- 373 (475)
.. .....+..|...+..++.+. .+..++||||.+++.++.+...|.+. ++..++
T Consensus 371 ~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~ 450 (746)
T KOG0354|consen 371 RLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQG 450 (746)
T ss_pred hhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecc
Confidence 00 00001122334444444432 23568999999999999999998741 222222
Q ss_pred ----cCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecc
Q 011901 374 ----HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449 (475)
Q Consensus 374 ----h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~ 449 (475)
..+|++.++.++++.|++|+++|||||+++++|+||+.|+.||-||...|+...+||+|| ||. +.|.|+++++.
T Consensus 451 ~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~ 528 (746)
T KOG0354|consen 451 KSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTG 528 (746)
T ss_pred ccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcc
Confidence 248999999999999999999999999999999999999999999999999999999999 998 57999999996
Q ss_pred hhHHHHHHHH
Q 011901 450 QQARQVKSIE 459 (475)
Q Consensus 450 ~~~~~~~~i~ 459 (475)
......+...
T Consensus 529 ~~~~~~E~~~ 538 (746)
T KOG0354|consen 529 SEVIEFERNN 538 (746)
T ss_pred hhHHHHHHHH
Confidence 6555444443
No 72
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.2e-35 Score=297.08 Aligned_cols=308 Identities=20% Similarity=0.196 Sum_probs=213.0
Q ss_pred CCCcHHHHHhhhhHhc-C--CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 120 SKLFPIQKAVLEPAMQ-G--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~-~--~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
..|+|||.+++..+.. + +..++++|||+|||++++..+. .+ +.++||+||+..|+.||.++|.++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-----------~k~tLILvps~~Lv~QW~~ef~~~ 321 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-----------KKSCLVLCTSAVSVEQWKQQFKMW 321 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-----------CCCEEEEeCcHHHHHHHHHHHHHh
Confidence 5699999999999874 3 3689999999999998865443 32 345999999999999999999998
Q ss_pred CC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHh--------CCCCCCCccEEEEecccccccCCchHHH
Q 011901 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--------NALNLSEVQFVVLDEADQMLSVGFAEDV 266 (475)
Q Consensus 197 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~--------~~~~~~~~~~vViDE~H~~~~~~~~~~~ 266 (475)
+. ...+...+|+.... .....+|+|+|++++.....+ ..+.-..+++||+||+|++. ...+
T Consensus 322 ~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp----A~~f 392 (732)
T TIGR00603 322 STIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP----AAMF 392 (732)
T ss_pred cCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----HHHH
Confidence 63 33344444433211 123468999999988543221 11223568999999999973 3455
Q ss_pred HHHHHhCCCCCcEEEEccCCChhHHH--HHHhhcCCCcEEEecCC--CccccccCeeEEEEe------------------
Q 011901 267 EVILERLPQNRQSMMFSATMPPWIRS--LTNKYLKNPLTVDLVGD--SDQKLADGISLYSIA------------------ 324 (475)
Q Consensus 267 ~~i~~~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------------------ 324 (475)
..++..+. ....+++||||...... ....+++ |..+...-. .............+.
T Consensus 393 r~il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~ 470 (732)
T TIGR00603 393 RRVLTIVQ-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRK 470 (732)
T ss_pred HHHHHhcC-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchh
Confidence 56666664 45689999999532211 1122222 222211000 000011111111111
Q ss_pred -----ccCccchHHHHHHHHHh-ccCCcEEEEecChhhHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHhcC-CCcEE
Q 011901 325 -----TSMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG-RFNIL 397 (475)
Q Consensus 325 -----~~~~~~~~~l~~l~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vl 397 (475)
.....|...+..+++.+ ..+.++||||.+.+.++.++..| ++..+||++++.+|.++++.|++| .+++|
T Consensus 471 k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 471 RMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL----GKPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc----CCceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 11123444555566654 36789999999999999888877 467799999999999999999875 78999
Q ss_pred EecCccccCCCCCCCCEEEEcCCCC-ChhHHHHhhhccCCCCCCCeE-------EEEecchhHHH
Q 011901 398 IATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGSA-------ILIYTDQQARQ 454 (475)
Q Consensus 398 vaT~~~~~Gidi~~~~~vi~~~~p~-~~~~~~Q~~GR~gR~~~~g~~-------~~~~~~~~~~~ 454 (475)
|+|+++.+|+|+|++++||+++.|. |..+|+||+||++|.+..|.+ |.+.+.+..+.
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~ 611 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEM 611 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHH
Confidence 9999999999999999999999885 999999999999998766554 77777766543
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=5.4e-35 Score=280.35 Aligned_cols=288 Identities=19% Similarity=0.222 Sum_probs=198.2
Q ss_pred HHHHhhhhHhcCCc--EEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC----
Q 011901 125 IQKAVLEPAMQGRD--MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---- 198 (475)
Q Consensus 125 ~Q~~~i~~i~~~~~--~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~---- 198 (475)
||.++++.+..+.+ +++.+|||||||.+|++|++.. +.++++++|+++|++|+++.+++++.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------CCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 69999999998864 7889999999999999998742 34589999999999999999888762
Q ss_pred --CCceEEEEcCcchh--HH------------------HHHhhcCCcEEEEccHHHHHHHHhCC--------CCCCCccE
Q 011901 199 --SLDTICVYGGTPIS--HQ------------------MRALDYGVDAVVGTPGRVIDLIKRNA--------LNLSEVQF 248 (475)
Q Consensus 199 --~~~~~~~~~~~~~~--~~------------------~~~~~~~~~Ilv~T~~~l~~~l~~~~--------~~~~~~~~ 248 (475)
+..+..+.|..... .. .......++|++|||+.|..++.... ..+.++++
T Consensus 69 ~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~ 148 (357)
T TIGR03158 69 ERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFST 148 (357)
T ss_pred CCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCE
Confidence 23333344432211 00 00112358899999999987664321 12578999
Q ss_pred EEEecccccccCCc-----hHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhh--cCCCcEEEecCC----Cc------
Q 011901 249 VVLDEADQMLSVGF-----AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY--LKNPLTVDLVGD----SD------ 311 (475)
Q Consensus 249 vViDE~H~~~~~~~-----~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~----~~------ 311 (475)
+|+||+|.+..++. ......++.......++++||||+++.+....... ++.+.... .+. .+
T Consensus 149 iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v-~g~~~~~~~~~~~~~ 227 (357)
T TIGR03158 149 VIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPI-DGEKYQFPDNPELEA 227 (357)
T ss_pred EEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeee-cCcccccCCChhhhc
Confidence 99999999875432 12233344444445799999999999877766654 34433221 111 00
Q ss_pred -------cccccCeeEEEEeccCccchHHHHHHHHHh------ccCCcEEEEecChhhHHHHHHHHHcc---CCcccccC
Q 011901 312 -------QKLADGISLYSIATSMYEKPSIIGQLITEH------AKGGKCIVFTQTKRDADRLAHAMAKS---YNCEPLHG 375 (475)
Q Consensus 312 -------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~------~~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~h~ 375 (475)
..+...+...... ....+...+..+++.. ..+++++|||+++..++.++..|.+. +.+..+||
T Consensus 228 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g 306 (357)
T TIGR03158 228 DNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITG 306 (357)
T ss_pred cccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeec
Confidence 0011123333323 2223344343333322 24679999999999999999999752 46788999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccC
Q 011901 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTG 435 (475)
Q Consensus 376 ~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~g 435 (475)
.+++.+|.+. ++..|||||+++++|+|+|.+ +|| ++ |.+...|+||+||+|
T Consensus 307 ~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 307 FAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999988654 478999999999999999986 565 44 889999999999997
No 74
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.1e-35 Score=298.93 Aligned_cols=317 Identities=17% Similarity=0.236 Sum_probs=229.2
Q ss_pred cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.|. .|+++|..+...+..|+ +..+.||+|||+++.+|++..... |..+.+++||+.||.|.++++..+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---------G~~v~VvTpt~~LA~qd~e~~~~l 142 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---------GKGVHLITVNDYLAKRDAEEMGQV 142 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 365 59999999988888765 999999999999999999866544 778999999999999999999888
Q ss_pred CC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHH-HHHHHhCC------CCCCCccEEEEecccccccCC------
Q 011901 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQMLSVG------ 261 (475)
Q Consensus 197 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~~~~~vViDE~H~~~~~~------ 261 (475)
+. ++++.++.|+.+...+.+ ...+++|++|||+.| .+++..+. ..+..+.++|+||+|+++=..
T Consensus 143 ~~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpli 221 (790)
T PRK09200 143 YEFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLI 221 (790)
T ss_pred HhhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCcee
Confidence 65 567788888877332222 335699999999998 55554432 246789999999999864110
Q ss_pred ----------chHHHHHHHHhCCCC-------------------------------------------------------
Q 011901 262 ----------FAEDVEVILERLPQN------------------------------------------------------- 276 (475)
Q Consensus 262 ----------~~~~~~~i~~~~~~~------------------------------------------------------- 276 (475)
.......+...+...
T Consensus 222 isg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~ 301 (790)
T PRK09200 222 ISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKR 301 (790)
T ss_pred eeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhc
Confidence 111111111111000
Q ss_pred --------------------------------------------------------------CcEEEEccCCChhHHHHH
Q 011901 277 --------------------------------------------------------------RQSMMFSATMPPWIRSLT 294 (475)
Q Consensus 277 --------------------------------------------------------------~~~i~~SAT~~~~~~~~~ 294 (475)
..+.+||+|....-..+.
T Consensus 302 d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~ 381 (790)
T PRK09200 302 DVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFF 381 (790)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHH
Confidence 134566666655444444
Q ss_pred HhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHH-hccCCcEEEEecChhhHHHHHHHHHc-cCCccc
Q 011901 295 NKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEP 372 (475)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~ 372 (475)
..|.-+ .+.+ ............. .+.....+|...+...+.+ +..+.++||||++++.++.++..|.+ ++++..
T Consensus 382 ~~Y~l~--v~~I-Pt~kp~~r~d~~~-~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~ 457 (790)
T PRK09200 382 EVYNME--VVQI-PTNRPIIRIDYPD-KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNL 457 (790)
T ss_pred HHhCCc--EEEC-CCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEE
Confidence 433221 1111 1111111111111 1223444566666666654 35688999999999999999999975 699999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCC---CCCC-----EEEEcCCCCChhHHHHhhhccCCCCCCCeEE
Q 011901 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV---PNVD-----LIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444 (475)
Q Consensus 373 ~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi---~~~~-----~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~ 444 (475)
+||++.+.++..+...+..| .|+|||++++||+|+ |++. +||+++.|.+...|.||+||+||.|.+|.++
T Consensus 458 L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~ 535 (790)
T PRK09200 458 LNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ 535 (790)
T ss_pred ecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEE
Confidence 99999988888777777666 699999999999999 6898 9999999999999999999999999999999
Q ss_pred EEecchhH
Q 011901 445 LIYTDQQA 452 (475)
Q Consensus 445 ~~~~~~~~ 452 (475)
.+++..|.
T Consensus 536 ~~is~eD~ 543 (790)
T PRK09200 536 FFISLEDD 543 (790)
T ss_pred EEEcchHH
Confidence 99997553
No 75
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=1.6e-33 Score=289.90 Aligned_cols=313 Identities=19% Similarity=0.272 Sum_probs=222.9
Q ss_pred CCCCcHHHHHhhhhHhcC---CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHh
Q 011901 119 ISKLFPIQKAVLEPAMQG---RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~---~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 195 (475)
...|++.|.++++.+..+ +++++.|+||||||.+|+.++...+.. |.++++++|+++|+.|+++.+++
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---------g~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---------GKQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHH
Confidence 346999999999999874 789999999999999998887766633 67899999999999999999998
Q ss_pred hCCCCceEEEEcCcchhHHHHH----hhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCc------hHH
Q 011901 196 SAPSLDTICVYGGTPISHQMRA----LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF------AED 265 (475)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~------~~~ 265 (475)
.+ +..+..++|+.+..++... ..+.++|+|||++.+. ..++++++||+||+|....++. ...
T Consensus 213 ~f-g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 213 RF-GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred Hh-CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 77 4677888888776554433 2356899999998764 3578999999999997654321 122
Q ss_pred HHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEec-----c-CccchHHHHHHHH
Q 011901 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-----S-MYEKPSIIGQLIT 339 (475)
Q Consensus 266 ~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~l~~l~~ 339 (475)
+. ++.....+.+++++||||+......... +....+.+...........+....... . ..-...++..+.+
T Consensus 285 va-~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~ 361 (679)
T PRK05580 285 LA-VVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQ 361 (679)
T ss_pred HH-HHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHH
Confidence 22 3334456789999999988765544332 122222221111111111111111100 0 0011345555666
Q ss_pred HhccCCcEEEEecChh------------------------------------------------------------hHHH
Q 011901 340 EHAKGGKCIVFTQTKR------------------------------------------------------------DADR 359 (475)
Q Consensus 340 ~~~~~~~~lVf~~~~~------------------------------------------------------------~~~~ 359 (475)
....++++|||+|.+. .+++
T Consensus 362 ~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~ 441 (679)
T PRK05580 362 RLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTER 441 (679)
T ss_pred HHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHH
Confidence 6677889999987532 2456
Q ss_pred HHHHHHcc---CCcccccCCCC--HHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCC------------
Q 011901 360 LAHAMAKS---YNCEPLHGDIS--QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN------------ 422 (475)
Q Consensus 360 l~~~L~~~---~~~~~~h~~~~--~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~------------ 422 (475)
+++.|.+. .++..+|+++. ..+++++++.|++|+.+|||+|+++++|+|+|+++.|++++++.
T Consensus 442 ~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er 521 (679)
T PRK05580 442 LEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASER 521 (679)
T ss_pred HHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHH
Confidence 67777653 56788899986 46789999999999999999999999999999999997776553
Q ss_pred ChhHHHHhhhccCCCCCCCeEEEEecchh
Q 011901 423 TSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (475)
Q Consensus 423 ~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~ 451 (475)
..+.|.|++||+||+++.|.+++.....+
T Consensus 522 ~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 522 TFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred HHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 23678999999999999999997665433
No 76
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1e-34 Score=292.28 Aligned_cols=316 Identities=18% Similarity=0.238 Sum_probs=219.0
Q ss_pred CCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC--
Q 011901 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~-- 198 (475)
.++|+|.+++..+...+..+++++||+|||++|.+|++..... +..++|++|++.||.|+++++..++.
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~---------g~~V~VVTpn~yLA~Rdae~m~~l~~~L 138 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT---------GKGAMLVTTNDYLAKRDAEEMGPVYEWL 138 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc---------CCceEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 4566666666666655568999999999999999998766543 55699999999999999999877654
Q ss_pred CCceEEEEcCcc---hhHHHHHhhcCCcEEEEccHHH-HHHHHh------CCCCCCCccEEEEecccccccCC-------
Q 011901 199 SLDTICVYGGTP---ISHQMRALDYGVDAVVGTPGRV-IDLIKR------NALNLSEVQFVVLDEADQMLSVG------- 261 (475)
Q Consensus 199 ~~~~~~~~~~~~---~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~------~~~~~~~~~~vViDE~H~~~~~~------- 261 (475)
++++.+.+++.. .....+...++++|++|||+.| .+++.. +...+.++.++|+||||.++-..
T Consensus 139 GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartplii 218 (762)
T TIGR03714 139 GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeee
Confidence 455555555421 2222333446799999999999 555532 22346789999999999974211
Q ss_pred ---------chHHHHHHHHhCCC---------------------------------------------------------
Q 011901 262 ---------FAEDVEVILERLPQ--------------------------------------------------------- 275 (475)
Q Consensus 262 ---------~~~~~~~i~~~~~~--------------------------------------------------------- 275 (475)
.......+.+.+.+
T Consensus 219 sg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 298 (762)
T TIGR03714 219 SGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRN 298 (762)
T ss_pred eCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 01111111121110
Q ss_pred ------------------------------------------------------------CCcEEEEccCCChhHHHHHH
Q 011901 276 ------------------------------------------------------------NRQSMMFSATMPPWIRSLTN 295 (475)
Q Consensus 276 ------------------------------------------------------------~~~~i~~SAT~~~~~~~~~~ 295 (475)
-..+.+||+|.......+..
T Consensus 299 ~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~ 378 (762)
T TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE 378 (762)
T ss_pred CceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH
Confidence 02345677776554455544
Q ss_pred hhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHH-hccCCcEEEEecChhhHHHHHHHHHc-cCCcccc
Q 011901 296 KYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPL 373 (475)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~ 373 (475)
.|.- ..+.+ ............ -.+.....+|...+...+.+ +..+.++||||++++.++.++..|.+ ++++..+
T Consensus 379 iY~l--~v~~I-Pt~kp~~r~d~~-d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L 454 (762)
T TIGR03714 379 TYSL--SVVKI-PTNKPIIRIDYP-DKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLL 454 (762)
T ss_pred HhCC--CEEEc-CCCCCeeeeeCC-CeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEe
Confidence 3321 11211 111111011111 11223344566666555544 46788999999999999999999975 5899999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCC---------CCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEE
Q 011901 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP---------NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444 (475)
Q Consensus 374 h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~---------~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~ 444 (475)
||++.+.++..+...++.| .|+|||++++||+|++ ++++|+++++|....+ .||+||+||.|.+|.++
T Consensus 455 ~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 455 NAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred cCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEE
Confidence 9999998888777766666 6999999999999999 8999999999998776 99999999999999999
Q ss_pred EEecchhH
Q 011901 445 LIYTDQQA 452 (475)
Q Consensus 445 ~~~~~~~~ 452 (475)
++++.+|.
T Consensus 532 ~~is~eD~ 539 (762)
T TIGR03714 532 FFVSLEDD 539 (762)
T ss_pred EEEccchh
Confidence 99997653
No 77
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=4.2e-34 Score=285.95 Aligned_cols=316 Identities=20% Similarity=0.242 Sum_probs=228.7
Q ss_pred cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.|. .|++.|.-+...+..|+ +.+++||+|||+++.+|++-.... |.++.+++||+.||.|.++++..+
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~VvTpt~~LA~qdae~~~~l 120 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAEWMGQV 120 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 354 48888888888777764 999999999999999999644433 556999999999999999999998
Q ss_pred CC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHH-HHHHHhC------CCCCCCccEEEEecccccccCC------
Q 011901 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQMLSVG------ 261 (475)
Q Consensus 197 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~~~~~~vViDE~H~~~~~~------ 261 (475)
+. ++++.+++|+.+...+... ..++|++|||+.| .+++..+ ...++.++++|+||+|+++-..
T Consensus 121 ~~~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLi 198 (745)
T TIGR00963 121 YRFLGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLI 198 (745)
T ss_pred hccCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHh
Confidence 76 4677888888776544333 3589999999999 8888665 3457889999999999874210
Q ss_pred ----------chHHHHHHHHhCCC--------------------------------------------------------
Q 011901 262 ----------FAEDVEVILERLPQ-------------------------------------------------------- 275 (475)
Q Consensus 262 ----------~~~~~~~i~~~~~~-------------------------------------------------------- 275 (475)
.......+.+.+..
T Consensus 199 isg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~ 278 (745)
T TIGR00963 199 ISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEK 278 (745)
T ss_pred hcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 00000111111100
Q ss_pred -------------------------------------------------------------CCcEEEEccCCChhHHHHH
Q 011901 276 -------------------------------------------------------------NRQSMMFSATMPPWIRSLT 294 (475)
Q Consensus 276 -------------------------------------------------------------~~~~i~~SAT~~~~~~~~~ 294 (475)
-..+.+||+|.......+.
T Consensus 279 d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~ 358 (745)
T TIGR00963 279 DVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFE 358 (745)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHH
Confidence 0234566666655444444
Q ss_pred HhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHH-HHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCccc
Q 011901 295 NKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII-GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEP 372 (475)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~ 372 (475)
..|.-+-..+ .............. +..+..+|...+ ..+.+.+..|.++||||++++.++.++..|.+ ++++..
T Consensus 359 ~iY~l~vv~I---Ptnkp~~R~d~~d~-i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~ 434 (745)
T TIGR00963 359 KIYNLEVVVV---PTNRPVIRKDLSDL-VYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNV 434 (745)
T ss_pred HHhCCCEEEe---CCCCCeeeeeCCCe-EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEE
Confidence 4443221111 11111000011111 112223344333 44555567899999999999999999999975 688999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCC-------CCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEE
Q 011901 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN-------VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445 (475)
Q Consensus 373 ~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~-------~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~ 445 (475)
+|++ +.+|+..+..|..+...|+|||++++||+||+. .-+||+++.|.|...|.|++||+||.|.+|.+..
T Consensus 435 Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 435 LNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred eeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 9998 789999999999999999999999999999998 5599999999999999999999999999999999
Q ss_pred EecchhH
Q 011901 446 IYTDQQA 452 (475)
Q Consensus 446 ~~~~~~~ 452 (475)
+++..|.
T Consensus 513 ~ls~eD~ 519 (745)
T TIGR00963 513 FLSLEDN 519 (745)
T ss_pred EEeccHH
Confidence 9997653
No 78
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.2e-34 Score=296.93 Aligned_cols=334 Identities=18% Similarity=0.275 Sum_probs=257.4
Q ss_pred HHHHHHH-HcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHH
Q 011901 109 DIVAALA-RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (475)
Q Consensus 109 ~l~~~l~-~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (475)
+....+. ..|...+++-|.++|...+.|+++++.+|||.||+++|.+|++-. ++.+++|.|..+|.+
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------------~gitvVISPL~SLm~ 318 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------------GGVTVVISPLISLMQ 318 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------------CCceEEeccHHHHHH
Confidence 3444443 468899999999999999999999999999999999999998743 457999999999998
Q ss_pred HHHHHHHhhCCCCceEEEEcCcchhHHHHH---hh-c--CCcEEEEccHHHHHH--HHhCCCCCCC---ccEEEEecccc
Q 011901 188 QVEKEFHESAPSLDTICVYGGTPISHQMRA---LD-Y--GVDAVVGTPGRVIDL--IKRNALNLSE---VQFVVLDEADQ 256 (475)
Q Consensus 188 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~--~~~Ilv~T~~~l~~~--l~~~~~~~~~---~~~vViDE~H~ 256 (475)
.+...+... ++....+.++.....+... +. + .++|+..||+++... +......+.. +.++|+||||+
T Consensus 319 DQv~~L~~~--~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 319 DQVTHLSKK--GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred HHHHhhhhc--CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHH
Confidence 887777443 6788888887776544332 22 2 489999999998632 1111122333 78899999999
Q ss_pred cccCC--chHHHHH---HHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccch
Q 011901 257 MLSVG--FAEDVEV---ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (475)
Q Consensus 257 ~~~~~--~~~~~~~---i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (475)
.+.|+ |.+.+.+ +..+.+ ...++.+|||.++.++......++-......... ....++.............
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s---fnR~NL~yeV~~k~~~~~~ 472 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFKSS---FNRPNLKYEVSPKTDKDAL 472 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceeccc---CCCCCceEEEEeccCccch
Confidence 99987 5554443 333443 4689999999998887766555443322222111 1222333333333323444
Q ss_pred HHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHcc-CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCC
Q 011901 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (475)
Q Consensus 332 ~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~ 410 (475)
..+...++....+...||||.++.+++.++..|.+. ..+..+|++|++.+|+.+...|..++++|+|||=+.++|||.|
T Consensus 473 ~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~ 552 (941)
T KOG0351|consen 473 LDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKP 552 (941)
T ss_pred HHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCC
Confidence 455555666667789999999999999999999764 6899999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHH
Q 011901 411 NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460 (475)
Q Consensus 411 ~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~ 460 (475)
+|+.||||+.|.+.+.|.|-+|||||.|.+..|++||...|...++.+-.
T Consensus 553 DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 553 DVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred ceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998776665543
No 79
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-34 Score=262.29 Aligned_cols=332 Identities=18% Similarity=0.275 Sum_probs=237.6
Q ss_pred HHHHHHHH-cCCCC-CcHHHHHhhhhHhcC-CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHH
Q 011901 109 DIVAALAR-RGISK-LFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 109 ~l~~~l~~-~~~~~-l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
.+.++|++ .|..+ -++.|++|+..+..+ +|+.+++|||+||+++|.+|+|-+ +...+++.|..+|
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------~gITIV~SPLiAL 73 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------GGITIVISPLIAL 73 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------------CCeEEEehHHHHH
Confidence 34455555 34433 379999999988865 789999999999999999999865 4479999999999
Q ss_pred HHHHHHHHHhhCCCCceEEEEcCcchhHHHHH---h---hcCCcEEEEccHHHHHH----HHhCCCCCCCccEEEEeccc
Q 011901 186 AKQVEKEFHESAPSLDTICVYGGTPISHQMRA---L---DYGVDAVVGTPGRVIDL----IKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 186 a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~Ilv~T~~~l~~~----l~~~~~~~~~~~~vViDE~H 255 (475)
.....+-+.++- ..+..+.+.....++.+. + .....++..||++-... +.+...+-.-+.++|+||+|
T Consensus 74 IkDQiDHL~~LK--Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAH 151 (641)
T KOG0352|consen 74 IKDQIDHLKRLK--VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAH 151 (641)
T ss_pred HHHHHHHHHhcC--CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhh
Confidence 999988888763 333333333333333222 2 23478999999874321 11222234457899999999
Q ss_pred ccccCC--chHHHHH---HHHhCCCCCcEEEEccCCChhHHHHH--HhhcCCCcEEEecCCCccccccCeeEEEEeccCc
Q 011901 256 QMLSVG--FAEDVEV---ILERLPQNRQSMMFSATMPPWIRSLT--NKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328 (475)
Q Consensus 256 ~~~~~~--~~~~~~~---i~~~~~~~~~~i~~SAT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (475)
+.+.|| |.+++.. +...+ ++..-+.+|||.++.++... ..-+.+|..+.-.......+...+. ......
T Consensus 152 CVSQWGHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~---~K~~I~ 227 (641)
T KOG0352|consen 152 CVSQWGHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNH---MKSFIT 227 (641)
T ss_pred hHhhhccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHH---HHHHhh
Confidence 999987 5554443 33333 45667999999998876643 4445566554321111111000000 001111
Q ss_pred cchHHHHHHHH-Hhc-----------cCCcEEEEecChhhHHHHHHHHH-ccCCcccccCCCCHHHHHHHHHHHhcCCCc
Q 011901 329 EKPSIIGQLIT-EHA-----------KGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395 (475)
Q Consensus 329 ~~~~~l~~l~~-~~~-----------~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 395 (475)
+-...+.++.. .+. ..+-.||||.|++++++++-.|. ++++...+|.++...||..+.+.|.+|++.
T Consensus 228 D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P 307 (641)
T KOG0352|consen 228 DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP 307 (641)
T ss_pred hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC
Confidence 11222222221 111 12468999999999999999985 579999999999999999999999999999
Q ss_pred EEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHH
Q 011901 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (475)
Q Consensus 396 vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i 458 (475)
|++||...++|+|-|+|+.|||.+.|.|.+.|.|-.||+||.|++++|-++|+..|.+.+..+
T Consensus 308 vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 308 VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888766544
No 80
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.7e-33 Score=278.63 Aligned_cols=336 Identities=20% Similarity=0.277 Sum_probs=240.9
Q ss_pred cCCCCCcHHHHHhhhhHhc-CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcC-CCCCCeEEEEcCCHHHHHHHHHHHH
Q 011901 117 RGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG-RGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~-~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~-~~~~~~~lil~Pt~~La~q~~~~~~ 194 (475)
.++..+..+|..+.|.+.. +-|+||+||||||||-+|++.++..+.++..... ..++.++++++|+++||.++++.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 4566788999999998875 5789999999999999999999998876322211 1246789999999999999999999
Q ss_pred hhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCC---CCCCCccEEEEecccccccCCchHHHHHH
Q 011901 195 ESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (475)
Q Consensus 195 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~---~~~~~~~~vViDE~H~~~~~~~~~~~~~i 269 (475)
+.+. ++.+.-++|+....... -..++|+|+||+++--.-++.. ..++.+++||+||+|.+-+. .+..++.+
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHHH
Confidence 8887 77788888888755443 2347999999999753322211 13677999999999977666 78888877
Q ss_pred HHhCC-------CCCcEEEEccCCChhHHHHHHhhcCCC--cEEEecCCCccccccCeeEEEEecc-Cccc-----hHHH
Q 011901 270 LERLP-------QNRQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATS-MYEK-----PSII 334 (475)
Q Consensus 270 ~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~l 334 (475)
+.+.. ...+++++|||+|+.. ....|++-+ ..+...+..-..++-.....-.... .... ....
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN~e--DvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPNYE--DVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCCHH--HHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 76653 4678999999999843 233343332 2221111111111111111111111 0011 1234
Q ss_pred HHHHHHhccCCcEEEEecChhhHHHHHHHHHc------------------------cCCcccccCCCCHHHHHHHHHHHh
Q 011901 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK------------------------SYNCEPLHGDISQSQRERTLSAFR 390 (475)
Q Consensus 335 ~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~------------------------~~~~~~~h~~~~~~~r~~~~~~f~ 390 (475)
...++.+..|.+++|||.++..+.+.++.|.+ ..+....|.+|..++|.-+.+.|.
T Consensus 340 ~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~ 419 (1230)
T KOG0952|consen 340 DKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFK 419 (1230)
T ss_pred HHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHh
Confidence 44556667899999999999999988888854 124567899999999999999999
Q ss_pred cCCCcEEEecCccccCCCCCCCCEEE----EcCCCC------ChhHHHHhhhccCC--CCCCCeEEEEecchhHHHHHHH
Q 011901 391 DGRFNILIATDVAARGLDVPNVDLII----HYELPN------TSETFVHRTGRTGR--AGKKGSAILIYTDQQARQVKSI 458 (475)
Q Consensus 391 ~g~~~vlvaT~~~~~Gidi~~~~~vi----~~~~p~------~~~~~~Q~~GR~gR--~~~~g~~~~~~~~~~~~~~~~i 458 (475)
.|.++||+||..++.|+|+|+-.++| .||... +..+.+|..||||| .+..|.++++.+.+..+.+..+
T Consensus 420 ~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sL 499 (1230)
T KOG0952|consen 420 EGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESL 499 (1230)
T ss_pred cCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHH
Confidence 99999999999999999998544444 233332 67788999999999 4677999999888766655443
No 81
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.8e-32 Score=289.31 Aligned_cols=303 Identities=21% Similarity=0.358 Sum_probs=207.1
Q ss_pred HHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCH----HHHHHHHHHHHhhCCC
Q 011901 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR----ELAKQVEKEFHESAPS 199 (475)
Q Consensus 124 ~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~----~La~q~~~~~~~~~~~ 199 (475)
.+-.+.++.+..++.++++|+||||||. .+|.+..-. +.+....+++..|++ +||.++.+++....+.
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~------g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLEL------GRGVKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHc------CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 3445566666777778999999999998 567432211 112223456667864 7777777777653211
Q ss_pred CceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccc-ccccCCchHH-HHHHHHhCCCCC
Q 011901 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAED-VEVILERLPQNR 277 (475)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H-~~~~~~~~~~-~~~i~~~~~~~~ 277 (475)
.+.+.- .... ....+.+|+|+|++.|++.+..+.. ++++++|||||+| ++++.+|... +..++.. .++.
T Consensus 149 ---~VGY~v-rf~~---~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdl 219 (1294)
T PRK11131 149 ---CVGYKV-RFND---QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDL 219 (1294)
T ss_pred ---eeceee-cCcc---ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc-CCCc
Confidence 111110 1011 1234589999999999999876654 8999999999999 6788776543 3333222 2468
Q ss_pred cEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCcc---chHHHHHHHHH-----hccCCcEEE
Q 011901 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE---KPSIIGQLITE-----HAKGGKCIV 349 (475)
Q Consensus 278 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~l~~~-----~~~~~~~lV 349 (475)
|+|+||||++. ..+...+...| .+.+.+.. . .+..++......+ +...+..++.. ....+.+||
T Consensus 220 KvILmSATid~--e~fs~~F~~ap-vI~V~Gr~---~--pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILV 291 (1294)
T PRK11131 220 KVIITSATIDP--ERFSRHFNNAP-IIEVSGRT---Y--PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILI 291 (1294)
T ss_pred eEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc---c--cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 99999999976 45665555444 34432221 1 1223333222111 23333333321 124578999
Q ss_pred EecChhhHHHHHHHHHcc-C---CcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCC-----
Q 011901 350 FTQTKRDADRLAHAMAKS-Y---NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL----- 420 (475)
Q Consensus 350 f~~~~~~~~~l~~~L~~~-~---~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~----- 420 (475)
||++.++++.+++.|.+. + .+..+||++++++|.++++. .|..+|+|||+++++|+|||++++||+++.
T Consensus 292 FLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~ 369 (1294)
T PRK11131 292 FMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISR 369 (1294)
T ss_pred EcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccc
Confidence 999999999999999753 3 35689999999999999886 578899999999999999999999999862
Q ss_pred ----------C---CChhHHHHhhhccCCCCCCCeEEEEecchhHHH
Q 011901 421 ----------P---NTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454 (475)
Q Consensus 421 ----------p---~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~ 454 (475)
| .|.++|.||+||+||. .+|.||.+|++++...
T Consensus 370 Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 370 YSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred cccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh
Confidence 3 3568999999999999 6899999999876543
No 82
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.5e-32 Score=271.31 Aligned_cols=289 Identities=22% Similarity=0.278 Sum_probs=199.7
Q ss_pred EEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHH--
Q 011901 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA-- 217 (475)
Q Consensus 140 li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 217 (475)
|+.|+||||||.+|+..+...+. .+.++++++|+.+|+.|+++.+++.+ +..+.+++++.+..++...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~---------~g~~vLvlvP~i~L~~Q~~~~l~~~f-~~~v~vlhs~~~~~er~~~~~ 70 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA---------LGKSVLVLVPEIALTPQMIQRFKYRF-GSQVAVLHSGLSDSEKLQAWR 70 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHHHHHHHHh-CCcEEEEECCCCHHHHHHHHH
Confidence 57899999999999766555542 26789999999999999999999887 3567777877765554333
Q ss_pred --hhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCC-----c-hHHHHHHHHhCCCCCcEEEEccCCChh
Q 011901 218 --LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-----F-AEDVEVILERLPQNRQSMMFSATMPPW 289 (475)
Q Consensus 218 --~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~-----~-~~~~~~i~~~~~~~~~~i~~SAT~~~~ 289 (475)
..+..+|+|||+..+. ..+.++++|||||+|....++ + ...+..... ...+.+++++||||+.+
T Consensus 71 ~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra-~~~~~~vil~SATPsle 142 (505)
T TIGR00595 71 KVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRA-KKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHH-HhcCCCEEEEeCCCCHH
Confidence 2345899999998764 357899999999999876433 1 122333333 33578899999998875
Q ss_pred HHHHHHhhcCCCcEEEecCCCccccccCeeEEEEecc---CccchHHHHHHHHHhccCCcEEEEecChhh----------
Q 011901 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS---MYEKPSIIGQLITEHAKGGKCIVFTQTKRD---------- 356 (475)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~---------- 356 (475)
....... +....+.+...........+........ ..-...++..+.+....++++|||+|++..
T Consensus 143 s~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg 220 (505)
T TIGR00595 143 SYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCG 220 (505)
T ss_pred HHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCc
Confidence 4443322 1111121111111111111111111000 011124555666667788899999776543
Q ss_pred --------------------------------------------------HHHHHHHHHcc---CCcccccCCCCHHHH-
Q 011901 357 --------------------------------------------------ADRLAHAMAKS---YNCEPLHGDISQSQR- 382 (475)
Q Consensus 357 --------------------------------------------------~~~l~~~L~~~---~~~~~~h~~~~~~~r- 382 (475)
.+++.+.|.+. .++..+|++++..++
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~ 300 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGA 300 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccH
Confidence 46777777764 467788999877665
Q ss_pred -HHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCC------------ChhHHHHhhhccCCCCCCCeEEEEec
Q 011901 383 -ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN------------TSETFVHRTGRTGRAGKKGSAILIYT 448 (475)
Q Consensus 383 -~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~------------~~~~~~Q~~GR~gR~~~~g~~~~~~~ 448 (475)
+.+++.|.+|+.+|||+|+++++|+|+|+++.|++++++. ..+.|.|++||+||.+++|.+++...
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 8899999999999999999999999999999987665542 24678999999999999999886543
No 83
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=8.7e-33 Score=247.76 Aligned_cols=339 Identities=20% Similarity=0.338 Sum_probs=257.5
Q ss_pred cccCCCCCHHHHHHHHH-cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEE
Q 011901 100 DISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~li 178 (475)
+-++++++.+..+.|++ ....+++|.|..+|+..+++.+.++..|||.||+++|.+|++.. ...+|+
T Consensus 72 dkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------------dg~alv 139 (695)
T KOG0353|consen 72 DKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------------DGFALV 139 (695)
T ss_pred ccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------------CCceEe
Confidence 34578999999999976 46778999999999999999999999999999999999998854 566999
Q ss_pred EcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHH------HhhcCCcEEEEccHHHHH---HHHh--CCCCCCCcc
Q 011901 179 LAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR------ALDYGVDAVVGTPGRVID---LIKR--NALNLSEVQ 247 (475)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Ilv~T~~~l~~---~l~~--~~~~~~~~~ 247 (475)
+||...|.+...-.++.+ ++....+.......+... ..+....++..||+.+.. ++.+ ..+....+.
T Consensus 140 i~plislmedqil~lkql--gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~ 217 (695)
T KOG0353|consen 140 ICPLISLMEDQILQLKQL--GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFK 217 (695)
T ss_pred echhHHHHHHHHHHHHHh--CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeE
Confidence 999999999988888887 445444444433222111 112347899999998853 2221 334566789
Q ss_pred EEEEecccccccCC--chHHHH--HHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEE
Q 011901 248 FVVLDEADQMLSVG--FAEDVE--VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323 (475)
Q Consensus 248 ~vViDE~H~~~~~~--~~~~~~--~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (475)
++.+||+|+...|| |...+. .++++--++..++++|||.+..+...+...+.-............ .++ .|.+
T Consensus 218 ~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr---~nl-~yev 293 (695)
T KOG0353|consen 218 LIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNR---PNL-KYEV 293 (695)
T ss_pred EEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCC---CCc-eeEe
Confidence 99999999999886 444333 345554467789999999988877766665443322222111111 111 2233
Q ss_pred eccCccchHHHHHHH---HHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEe
Q 011901 324 ATSMYEKPSIIGQLI---TEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399 (475)
Q Consensus 324 ~~~~~~~~~~l~~l~---~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlva 399 (475)
........+...++. +....|...||||-+...++.++..|.. ++....+|..|.+++|.-+-+.|..|++.|+||
T Consensus 294 ~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqviva 373 (695)
T KOG0353|consen 294 RQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVA 373 (695)
T ss_pred eeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEE
Confidence 333333344444444 4445577889999999999999999975 588899999999999999999999999999999
Q ss_pred cCccccCCCCCCCCEEEEcCCCCChhHHHH-------------------------------------------hhhccCC
Q 011901 400 TDVAARGLDVPNVDLIIHYELPNTSETFVH-------------------------------------------RTGRTGR 436 (475)
Q Consensus 400 T~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q-------------------------------------------~~GR~gR 436 (475)
|-+.++|+|-|+++.|||.+.|.|.+.|.| -.||+||
T Consensus 374 tvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragr 453 (695)
T KOG0353|consen 374 TVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGR 453 (695)
T ss_pred EeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhcccccc
Confidence 999999999999999999999999999999 6799999
Q ss_pred CCCCCeEEEEecchhHHHHH
Q 011901 437 AGKKGSAILIYTDQQARQVK 456 (475)
Q Consensus 437 ~~~~g~~~~~~~~~~~~~~~ 456 (475)
.+.+..|+++|.-.|.-...
T Consensus 454 d~~~a~cilyy~~~difk~s 473 (695)
T KOG0353|consen 454 DDMKADCILYYGFADIFKIS 473 (695)
T ss_pred CCCcccEEEEechHHHHhHH
Confidence 99999999999876654333
No 84
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=8.1e-32 Score=264.63 Aligned_cols=294 Identities=23% Similarity=0.309 Sum_probs=201.3
Q ss_pred CCCcHHHHHhhhhHhc----CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHh
Q 011901 120 SKLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~----~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 195 (475)
..|+++|++++..+.. ++..+++.|||+|||.+++..+... +..+||+|||++|+.||.+.+.+
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------------~~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------------KRSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------------cCCEEEEECcHHHHHHHHHHHHH
Confidence 4699999999999998 8889999999999998876554433 33399999999999999988887
Q ss_pred hCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCC
Q 011901 196 SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (475)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~ 275 (475)
.+........+++..... .. ..|.|+|.+.+...-.-..+....+++||+||||+.... ....+...+..
T Consensus 103 ~~~~~~~~g~~~~~~~~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~----~~~~~~~~~~~ 172 (442)
T COG1061 103 FLLLNDEIGIYGGGEKEL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP----SYRRILELLSA 172 (442)
T ss_pred hcCCccccceecCceecc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH----HHHHHHHhhhc
Confidence 764332223334433211 11 479999999887642111222347999999999997544 23334444433
Q ss_pred CCcEEEEccCCChhHHH---HHHhhcCCCcEEEecCC--CccccccCeeEEEEec-------------------------
Q 011901 276 NRQSMMFSATMPPWIRS---LTNKYLKNPLTVDLVGD--SDQKLADGISLYSIAT------------------------- 325 (475)
Q Consensus 276 ~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------------------------- 325 (475)
...++++||||...... .....++ +..+..... ...........+.+..
T Consensus 173 ~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~ 251 (442)
T COG1061 173 AYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARG 251 (442)
T ss_pred ccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhh
Confidence 22389999998632211 1111111 222221100 0001111111111111
Q ss_pred -------------cCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHhcC
Q 011901 326 -------------SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392 (475)
Q Consensus 326 -------------~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~h~~~~~~~r~~~~~~f~~g 392 (475)
....+...+..++..+..+.+++|||.+..+++.++..+...-.+..+.|+.+..+|..+++.|+.|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g 331 (442)
T COG1061 252 TLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTG 331 (442)
T ss_pred hhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHcC
Confidence 0111222233333333246799999999999999999997543378999999999999999999999
Q ss_pred CCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCC
Q 011901 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGR 436 (475)
Q Consensus 393 ~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR 436 (475)
.+++||++.++.+|+|+|+++++|+..+..|...|.||+||+-|
T Consensus 332 ~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 332 GIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999
No 85
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.7e-31 Score=276.82 Aligned_cols=334 Identities=16% Similarity=0.210 Sum_probs=216.5
Q ss_pred CCcHHHHHhhhhHhcC--CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC
Q 011901 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 198 (475)
.|.|||..+...++.. ..+|+..++|.|||+.+.+.+...+.. +...++||+||. .|..||..++.+.+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-------g~~~rvLIVvP~-sL~~QW~~El~~kF- 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-------GRAERVLILVPE-TLQHQWLVEMLRRF- 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-------CCCCcEEEEcCH-HHHHHHHHHHHHHh-
Confidence 5899999998887654 469999999999999886655544433 234579999996 89999999998776
Q ss_pred CCceEEEEcCcchhHHHH--HhhcCCcEEEEccHHHHHHHH-hCCCCCCCccEEEEecccccccCC--chHHHHHHHHhC
Q 011901 199 SLDTICVYGGTPISHQMR--ALDYGVDAVVGTPGRVIDLIK-RNALNLSEVQFVVLDEADQMLSVG--FAEDVEVILERL 273 (475)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~--~~~~~~~Ilv~T~~~l~~~l~-~~~~~~~~~~~vViDE~H~~~~~~--~~~~~~~i~~~~ 273 (475)
++...++.++........ ......+++|+|++.+...-. ...+.-.++++||+||||++.... -... ...+..+
T Consensus 223 ~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~-y~~v~~L 301 (956)
T PRK04914 223 NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSRE-YQVVEQL 301 (956)
T ss_pred CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHH-HHHHHHH
Confidence 455444433321111000 011236899999988764211 111223478999999999986321 1122 3333333
Q ss_pred -CCCCcEEEEccCCChh-------------------HHHHHH-------------hhc-CCCc---------------EE
Q 011901 274 -PQNRQSMMFSATMPPW-------------------IRSLTN-------------KYL-KNPL---------------TV 304 (475)
Q Consensus 274 -~~~~~~i~~SAT~~~~-------------------~~~~~~-------------~~~-~~~~---------------~~ 304 (475)
.....++++||||... ...+.. .++ .++. ..
T Consensus 302 a~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~ 381 (956)
T PRK04914 302 AEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDI 381 (956)
T ss_pred hhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccch
Confidence 2346789999998410 001100 000 0000 00
Q ss_pred ---------------------------------EecCCCccc---ccc-CeeEEEEe-----------------------
Q 011901 305 ---------------------------------DLVGDSDQK---LAD-GISLYSIA----------------------- 324 (475)
Q Consensus 305 ---------------------------------~~~~~~~~~---~~~-~~~~~~~~----------------------- 324 (475)
.+....... .+. ....+...
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~p 461 (956)
T PRK04914 382 EPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYP 461 (956)
T ss_pred hHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCH
Confidence 000000000 000 00000000
Q ss_pred -------------ccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc--cCCcccccCCCCHHHHHHHHHHH
Q 011901 325 -------------TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLSAF 389 (475)
Q Consensus 325 -------------~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~~h~~~~~~~r~~~~~~f 389 (475)
.....|...+..+++.. .+.|+||||++...+..+.+.|.. ++++..+||+|++.+|+++++.|
T Consensus 462 e~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 462 EQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 01112334455555544 367999999999999999999953 68889999999999999999999
Q ss_pred hcC--CCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCC
Q 011901 390 RDG--RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCR 465 (475)
Q Consensus 390 ~~g--~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~ 465 (475)
+++ ..+|||||++.++|+|++.+++||+||.|+++..|.||+||++|.|+.+.+.++...........|.+.+...
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~ 618 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEG 618 (956)
T ss_pred hcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhh
Confidence 984 5999999999999999999999999999999999999999999999998876655544433445555544443
No 86
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.9e-31 Score=282.55 Aligned_cols=303 Identities=21% Similarity=0.329 Sum_probs=209.3
Q ss_pred HHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEE
Q 011901 127 KAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY 206 (475)
Q Consensus 127 ~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~ 206 (475)
.+.+..+..++.++++|+||||||. .+|.+..-. +.+....+++..|++.-|..+++.+.+.. +..+....
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~------~~~~~~~I~~tQPRRlAA~svA~RvA~el-g~~lG~~V 143 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLEL------GRGSHGLIGHTQPRRLAARTVAQRIAEEL-GTPLGEKV 143 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHc------CCCCCceEecCCccHHHHHHHHHHHHHHh-CCCcceEE
Confidence 4566666677789999999999997 456442211 11223467778899988888887776654 22322223
Q ss_pred cCc-chhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccc-ccccCCchHH-HHHHHHhCCCCCcEEEEc
Q 011901 207 GGT-PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAED-VEVILERLPQNRQSMMFS 283 (475)
Q Consensus 207 ~~~-~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H-~~~~~~~~~~-~~~i~~~~~~~~~~i~~S 283 (475)
|.. ....+ ...+..|.++|++.|...+.... .+.++++||+||+| ++++.++.-. +..++.. .++.++|+||
T Consensus 144 GY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlmS 218 (1283)
T TIGR01967 144 GYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITS 218 (1283)
T ss_pred eeEEcCCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEEe
Confidence 321 11111 23457899999999999887655 38899999999999 6887776654 4444433 3578999999
Q ss_pred cCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccC------ccchHHHHHHHHHh--ccCCcEEEEecChh
Q 011901 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM------YEKPSIIGQLITEH--AKGGKCIVFTQTKR 355 (475)
Q Consensus 284 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~l~~~~--~~~~~~lVf~~~~~ 355 (475)
||++. ..+...+...|. +.+.+.. .+ +..++..... .++...+...+.+. ...+.+|||+++.+
T Consensus 219 ATld~--~~fa~~F~~apv-I~V~Gr~---~P--Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~ 290 (1283)
T TIGR01967 219 ATIDP--ERFSRHFNNAPI-IEVSGRT---YP--VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGER 290 (1283)
T ss_pred CCcCH--HHHHHHhcCCCE-EEECCCc---cc--ceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHH
Confidence 99975 456666554443 3332211 11 1222222111 11222222223322 13579999999999
Q ss_pred hHHHHHHHHHcc----CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCC----------
Q 011901 356 DADRLAHAMAKS----YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELP---------- 421 (475)
Q Consensus 356 ~~~~l~~~L~~~----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p---------- 421 (475)
+++.+++.|.+. +.+..+||+++++++.++++.+ +..+|+|||+++++|+|||++++||+++.+
T Consensus 291 EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~ 368 (1283)
T TIGR01967 291 EIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTK 368 (1283)
T ss_pred HHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccC
Confidence 999999999753 3477899999999999986653 346999999999999999999999998843
Q ss_pred --------CChhHHHHhhhccCCCCCCCeEEEEecchhHHH
Q 011901 422 --------NTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454 (475)
Q Consensus 422 --------~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~ 454 (475)
.|.++|.||.||+||.+ +|.||.+|++.+...
T Consensus 369 ~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 369 VQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred ccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 26689999999999997 999999999876543
No 87
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=2.2e-30 Score=268.45 Aligned_cols=310 Identities=20% Similarity=0.258 Sum_probs=206.5
Q ss_pred CCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHh---
Q 011901 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--- 195 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~--- 195 (475)
...|+|+|+.+.........+++.+|||+|||.+++..+...+.+ +....+++..||.++++|+++++.+
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-------~~~~gi~~aLPT~Atan~m~~Rl~~~~~ 356 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-------GLADSIIFALPTQATANAMLSRLEALAS 356 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCCeEEEECcHHHHHHHHHHHHHHHHH
Confidence 457999999886554445668999999999999987776543322 2345799999999999999999875
Q ss_pred -hCCCCceEEEEcCcchhHHHH--------------------Hh-----h--cCCcEEEEccHHHHHHHHhC-CCCCCC-
Q 011901 196 -SAPSLDTICVYGGTPISHQMR--------------------AL-----D--YGVDAVVGTPGRVIDLIKRN-ALNLSE- 245 (475)
Q Consensus 196 -~~~~~~~~~~~~~~~~~~~~~--------------------~~-----~--~~~~Ilv~T~~~l~~~l~~~-~~~~~~- 245 (475)
.++...+.+.+|......... .. + --.+|+|||.+.++..+... ...+..
T Consensus 357 ~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~ 436 (878)
T PRK09694 357 KLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGF 436 (878)
T ss_pred HhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHH
Confidence 444445666665543211000 00 0 11699999999887554332 122222
Q ss_pred ---ccEEEEecccccccCCchHHHHHHHHhCC-CCCcEEEEccCCChhHHHHH-HhhcCC-Cc-------EEEecCCC--
Q 011901 246 ---VQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLT-NKYLKN-PL-------TVDLVGDS-- 310 (475)
Q Consensus 246 ---~~~vViDE~H~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~-~~~~~~-~~-------~~~~~~~~-- 310 (475)
-++|||||+|.+... ....+..+++.+. ....+|+||||+|....... ..+... +. .+......
T Consensus 437 ~La~svvIiDEVHAyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~ 515 (878)
T PRK09694 437 GLGRSVLIVDEVHAYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGA 515 (878)
T ss_pred hhccCeEEEechhhCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccc
Confidence 348999999987443 4445555555542 35679999999998775533 322111 00 00000000
Q ss_pred -cccc-------ccCeeEEE--Ee-ccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHcc----CCcccccC
Q 011901 311 -DQKL-------ADGISLYS--IA-TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS----YNCEPLHG 375 (475)
Q Consensus 311 -~~~~-------~~~~~~~~--~~-~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~h~ 375 (475)
.... ........ .. .........+..+++....+++++||||+++.++.+++.|.+. ..+..+||
T Consensus 516 ~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHs 595 (878)
T PRK09694 516 QRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHA 595 (878)
T ss_pred eeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeC
Confidence 0000 00000000 00 1112224556667766678889999999999999999999864 36899999
Q ss_pred CCCHHHHH----HHHHHH-hcCC---CcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCC
Q 011901 376 DISQSQRE----RTLSAF-RDGR---FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGK 439 (475)
Q Consensus 376 ~~~~~~r~----~~~~~f-~~g~---~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~ 439 (475)
+++..+|. ++++.| ++|+ ..|||||+++++|+|+ +++++|...+| .+.++||+||++|.+.
T Consensus 596 rf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 596 RFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99999994 567778 6665 4799999999999999 68999998888 6789999999999764
No 88
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=5.4e-30 Score=228.41 Aligned_cols=200 Identities=44% Similarity=0.774 Sum_probs=177.6
Q ss_pred ccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEc
Q 011901 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (475)
Q Consensus 101 ~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~ 180 (475)
|+++++++.+.+.+.+.|+..|+++|.++++.+.+++++++.+|||+|||++|+++++..+.... ...+++++|++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~----~~~~~~viii~ 76 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQALILA 76 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc----ccCCceEEEEc
Confidence 56889999999999999999999999999999999999999999999999999999999886632 12478899999
Q ss_pred CCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011901 181 PTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 181 Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~ 258 (475)
|+++|+.|+.+.+..+.. +..+..+.|+............+++|+|+||+.+...+.+....+.+++++|+||+|.+.
T Consensus 77 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~ 156 (203)
T cd00268 77 PTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML 156 (203)
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh
Confidence 999999999999888764 556677788887766666666689999999999999998888888999999999999998
Q ss_pred cCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEE
Q 011901 259 SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304 (475)
Q Consensus 259 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 304 (475)
+.++...+..++..++..++++++|||+++....+...++.++..+
T Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 157 DMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 8888999999999999899999999999999999999988887664
No 89
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.3e-28 Score=218.46 Aligned_cols=305 Identities=19% Similarity=0.259 Sum_probs=214.9
Q ss_pred CCcHHHHHhhhhHh----cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
+|++.|+.+-+.+. +..+.+++|-||+|||....-.+ +...+ .|..+.+..|+...+-+.+.+++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i-~~al~--------~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGI-EQALN--------QGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHH-HHHHh--------cCCeEEEecCcccchHHHHHHHHHh
Confidence 69999998877655 45789999999999998654444 44433 4888999999999999999999999
Q ss_pred CCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCC
Q 011901 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (475)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~ 276 (475)
|++..+.+++|+..... ...++|+|...|+++- +.++++|+||+|.+--..-.....++-+.....
T Consensus 168 F~~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~ 233 (441)
T COG4098 168 FSNCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKE 233 (441)
T ss_pred hccCCeeeEecCCchhc-------cccEEEEehHHHHHHH-------hhccEEEEeccccccccCCHHHHHHHHHhhccc
Confidence 99999999999876432 2688888888777643 468899999999864332222233444445566
Q ss_pred CcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccch------HHHHHHHH-HhccCCcEEE
Q 011901 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP------SIIGQLIT-EHAKGGKCIV 349 (475)
Q Consensus 277 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~l~~-~~~~~~~~lV 349 (475)
...|.+|||++..........- ...+.+....... +-.++.+........+. ..+..+++ +...+.+++|
T Consensus 234 g~~IylTATp~k~l~r~~~~g~--~~~~klp~RfH~~-pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~li 310 (441)
T COG4098 234 GATIYLTATPTKKLERKILKGN--LRILKLPARFHGK-PLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLI 310 (441)
T ss_pred CceEEEecCChHHHHHHhhhCC--eeEeecchhhcCC-CCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEE
Confidence 7789999999876654433321 1112111111111 11111121111111111 13334444 4566889999
Q ss_pred EecChhhHHHHHHHHHccCC---cccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCC--CCh
Q 011901 350 FTQTKRDADRLAHAMAKSYN---CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELP--NTS 424 (475)
Q Consensus 350 f~~~~~~~~~l~~~L~~~~~---~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p--~~~ 424 (475)
|+|+++..+.++..|++.++ +..+|+. ...|.+..++|++|+..+||+|+++++|+.+|++++.|.-.-. .+-
T Consensus 311 F~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTe 388 (441)
T COG4098 311 FFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTE 388 (441)
T ss_pred EecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccH
Confidence 99999999999999976643 4567877 4678889999999999999999999999999999998765444 388
Q ss_pred hHHHHhhhccCCC--CCCCeEEEEecchhHH
Q 011901 425 ETFVHRTGRTGRA--GKKGSAILIYTDQQAR 453 (475)
Q Consensus 425 ~~~~Q~~GR~gR~--~~~g~~~~~~~~~~~~ 453 (475)
+.++|..||+||. -..|.++.|.......
T Consensus 389 saLVQIaGRvGRs~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 389 SALVQIAGRVGRSLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred HHHHHHhhhccCCCcCCCCcEEEEeccchHH
Confidence 8999999999994 2357766666654443
No 90
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.8e-29 Score=249.78 Aligned_cols=332 Identities=19% Similarity=0.239 Sum_probs=243.0
Q ss_pred HcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHh
Q 011901 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 116 ~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 195 (475)
..-.++|-.+|++|+-++.+|..+++.|+|.+|||+++-.++.-+-. .+.+++|..|-++|-+|-++.|++
T Consensus 292 ~~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~---------h~TR~iYTSPIKALSNQKfRDFk~ 362 (1248)
T KOG0947|consen 292 LIYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK---------HMTRTIYTSPIKALSNQKFRDFKE 362 (1248)
T ss_pred hhCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh---------hccceEecchhhhhccchHHHHHH
Confidence 34557899999999999999999999999999999998776644332 267799999999999999999999
Q ss_pred hCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCC
Q 011901 196 SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (475)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~ 275 (475)
-|.+.+ +++|+.. ++..+.++|+|.+.|..++-++.--.+++.+||+||+|.+.+...+..++.++-.+|+
T Consensus 363 tF~Dvg--LlTGDvq-------inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~ 433 (1248)
T KOG0947|consen 363 TFGDVG--LLTGDVQ-------INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPR 433 (1248)
T ss_pred hccccc--eeeccee-------eCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccc
Confidence 987655 6777765 4455899999999999999888877899999999999999999999999999999999
Q ss_pred CCcEEEEccCCChhHHHHHHhhc---CCCcEEEecCCCccccccC-----------------------ee----------
Q 011901 276 NRQSMMFSATMPPWIRSLTNKYL---KNPLTVDLVGDSDQKLADG-----------------------IS---------- 319 (475)
Q Consensus 276 ~~~~i~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----------------------~~---------- 319 (475)
+.++|++|||.|+.. .++.... ...+.+ ++.....++-. +.
T Consensus 434 HV~~IlLSATVPN~~-EFA~WIGRtK~K~IyV--iST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~a 510 (1248)
T KOG0947|consen 434 HVNFILLSATVPNTL-EFADWIGRTKQKTIYV--ISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEA 510 (1248)
T ss_pred cceEEEEeccCCChH-HHHHHhhhccCceEEE--EecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccc
Confidence 999999999998753 2222221 111111 00000000000 00
Q ss_pred EEEE------------------------------eccCccchHHHHHHHHHhc--cCCcEEEEecChhhHHHHHHHHHc-
Q 011901 320 LYSI------------------------------ATSMYEKPSIIGQLITEHA--KGGKCIVFTQTKRDADRLAHAMAK- 366 (475)
Q Consensus 320 ~~~~------------------------------~~~~~~~~~~l~~l~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~- 366 (475)
.+.. ......+...+..++.... +--+++|||-+++.|+..++.|..
T Consensus 511 k~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~ 590 (1248)
T KOG0947|consen 511 KFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNL 590 (1248)
T ss_pred cccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhcc
Confidence 0000 0000001112333333322 234899999999999999888853
Q ss_pred ---------------------------------------cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCC
Q 011901 367 ---------------------------------------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (475)
Q Consensus 367 ---------------------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gi 407 (475)
..+++++||++-+--++-+...|..|-++||+||..+++|+
T Consensus 591 nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGV 670 (1248)
T KOG0947|consen 591 NLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGV 670 (1248)
T ss_pred CcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhc
Confidence 13467889999999999999999999999999999999999
Q ss_pred CCCCCCEEEEc-----CC---CCChhHHHHhhhccCCCC--CCCeEEEEecchhHHHHHHHHHHhCCCcccc
Q 011901 408 DVPNVDLIIHY-----EL---PNTSETFVHRTGRTGRAG--KKGSAILIYTDQQARQVKSIERDVGCRFTQV 469 (475)
Q Consensus 408 di~~~~~vi~~-----~~---p~~~~~~~Q~~GR~gR~~--~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (475)
|.|.-++|+.- +- .-++-.|.|+.|||||.| ..|.++++.... ......+++..--...++
T Consensus 671 NMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~-vp~~a~l~~li~G~~~~L 741 (1248)
T KOG0947|consen 671 NMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS-VPSAATLKRLIMGGPTRL 741 (1248)
T ss_pred CCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC-CCCHHHHhhHhcCCCchh
Confidence 99977777632 11 127889999999999976 467777776654 455666666654444444
No 91
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=4.9e-29 Score=252.42 Aligned_cols=345 Identities=20% Similarity=0.293 Sum_probs=237.3
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcC-CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCC--CCCCeEEEEcC
Q 011901 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR--GRNPLCLVLAP 181 (475)
Q Consensus 105 ~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~--~~~~~~lil~P 181 (475)
.+|.+-..+|. |..++.++|.++.+.++.+ .++++|||||+|||.++++.+++.+.++....+. -...++++++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 34444455554 3445899999999999876 5799999999999999999999998765442211 12358999999
Q ss_pred CHHHHHHHHHHHHhhCCCCceEE--EEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCC--CCCCCccEEEEeccccc
Q 011901 182 TRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQM 257 (475)
Q Consensus 182 t~~La~q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~--~~~~~~~~vViDE~H~~ 257 (475)
.++|++.|...|.+.+.++++.+ ++|+.....+. ..+..|+||||+.+--.-+... -..+-++++|+||.|.+
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 99999999999999887666544 56665543332 2347999999999743332211 12345788999999976
Q ss_pred ccCCchHHHHHHHHhC-------CCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccc
Q 011901 258 LSVGFAEDVEVILERL-------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (475)
Q Consensus 258 ~~~~~~~~~~~i~~~~-------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (475)
-+. .+..++.+..+. ...+.++++|||+|+.... ......++..+...+..-.+++-..+..-+......+
T Consensus 450 hDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV-~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 450 HDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDV-ASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred ccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhh-HHHhccCcccccccCcccCcCCccceEeccccCCchH
Confidence 554 777776665544 2367899999999985332 2222222322222222222222222222222222222
Q ss_pred h------HHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc--------------------------------------
Q 011901 331 P------SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-------------------------------------- 366 (475)
Q Consensus 331 ~------~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-------------------------------------- 366 (475)
. .....+++ +...+++|||+.+++++-+.+..++.
T Consensus 528 ~~qamNe~~yeKVm~-~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLL 606 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLE-HAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLL 606 (1674)
T ss_pred HHHHHHHHHHHHHHH-hCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHh
Confidence 2 12233333 34458999999999998887777752
Q ss_pred cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEE----EcCC------CCChhHHHHhhhccCC
Q 011901 367 SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLII----HYEL------PNTSETFVHRTGRTGR 436 (475)
Q Consensus 367 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi----~~~~------p~~~~~~~Q~~GR~gR 436 (475)
.++.+.+|.+|+..+|..+.+.|.+|.++|+|+|..+++|+|+|.-+++| .|++ +.++.+..||.||+||
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragr 686 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGR 686 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCC
Confidence 24677889999999999999999999999999999999999998766666 3443 3488999999999999
Q ss_pred C--CCCCeEEEEecchhHHHHHH
Q 011901 437 A--GKKGSAILIYTDQQARQVKS 457 (475)
Q Consensus 437 ~--~~~g~~~~~~~~~~~~~~~~ 457 (475)
. ...|..+++....+......
T Consensus 687 p~~D~~gegiiit~~se~qyyls 709 (1674)
T KOG0951|consen 687 PQYDTCGEGIIITDHSELQYYLS 709 (1674)
T ss_pred CccCcCCceeeccCchHhhhhHH
Confidence 5 35677787777766655444
No 92
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=5.2e-28 Score=257.85 Aligned_cols=306 Identities=18% Similarity=0.313 Sum_probs=194.2
Q ss_pred CCCcHHHHHhhhhHhc----C-CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHH
Q 011901 120 SKLFPIQKAVLEPAMQ----G-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~----~-~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 194 (475)
..++++|.+|+..+.. + +..+++++||||||.+++. ++..+.+. ....++|+++|+.+|+.|+.+.|.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~------~~~~rVLfLvDR~~L~~Qa~~~F~ 484 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA------KRFRRILFLVDRSALGEQAEDAFK 484 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc------CccCeEEEEecHHHHHHHHHHHHH
Confidence 3589999999987762 3 5799999999999988643 44444331 224579999999999999999998
Q ss_pred hhCCCCc--eEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhC-----CCCCCCccEEEEecccccccC-------
Q 011901 195 ESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-----ALNLSEVQFVVLDEADQMLSV------- 260 (475)
Q Consensus 195 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-----~~~~~~~~~vViDE~H~~~~~------- 260 (475)
....... ...+++...... ........|+|+|.+.+...+... ...+..+++||+||||+....
T Consensus 485 ~~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 485 DTKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred hcccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 8742211 111111111011 112345799999999987765321 134678899999999995310
Q ss_pred --------CchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHh--------------hcC---CCcEEEec-CCCcccc
Q 011901 261 --------GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNK--------------YLK---NPLTVDLV-GDSDQKL 314 (475)
Q Consensus 261 --------~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~--------------~~~---~~~~~~~~-~~~~~~~ 314 (475)
++...+..++..+ +...|+|||||...+..+... ++- .|..+... .......
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~ 640 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHF 640 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccc
Confidence 0135566777755 356899999997543222111 111 01111100 0000000
Q ss_pred ccC--eeEEE----------Eecc------Cccch--------HHHHHHHHHh--ccCCcEEEEecChhhHHHHHHHHHc
Q 011901 315 ADG--ISLYS----------IATS------MYEKP--------SIIGQLITEH--AKGGKCIVFTQTKRDADRLAHAMAK 366 (475)
Q Consensus 315 ~~~--~~~~~----------~~~~------~~~~~--------~~l~~l~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~ 366 (475)
... ...+. .... ...+. .++..+.+.. ..++++||||.+.++++.+.+.|.+
T Consensus 641 ~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~ 720 (1123)
T PRK11448 641 EKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKE 720 (1123)
T ss_pred cccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 000 00000 0000 00000 0111222211 1247999999999999999888764
Q ss_pred cC----------CcccccCCCCHHHHHHHHHHHhcCCC-cEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccC
Q 011901 367 SY----------NCEPLHGDISQSQRERTLSAFRDGRF-NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTG 435 (475)
Q Consensus 367 ~~----------~~~~~h~~~~~~~r~~~~~~f~~g~~-~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~g 435 (475)
.+ .+..+||+.+ ++..+++.|+++.. .|+|+++++.+|+|+|.+++||+++++.|...|.|++||+.
T Consensus 721 ~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgt 798 (1123)
T PRK11448 721 AFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRAT 798 (1123)
T ss_pred HHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhc
Confidence 21 2445788874 56789999999887 68999999999999999999999999999999999999999
Q ss_pred CCC
Q 011901 436 RAG 438 (475)
Q Consensus 436 R~~ 438 (475)
|..
T Consensus 799 R~~ 801 (1123)
T PRK11448 799 RLC 801 (1123)
T ss_pred cCC
Confidence 963
No 93
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=4.6e-28 Score=246.08 Aligned_cols=311 Identities=21% Similarity=0.249 Sum_probs=211.6
Q ss_pred CcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC--C
Q 011901 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--S 199 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~--~ 199 (475)
+++.| .+-.+.-...-+..++||+|||++|.+|++..+.. |..+.|++||+.||.|.++++..++. +
T Consensus 83 ~ydvQ--liGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~---------G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 83 HFDVQ--LIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS---------GRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred cchHH--HhhhhhhccCccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 55555 44444434457899999999999999999977654 45699999999999999999998875 5
Q ss_pred CceEEEEcCcchhHHHHHhhcCCcEEEEccHHH-HHHHHhC-CCCC-----CCccEEEEecccccccCC-----------
Q 011901 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN-ALNL-----SEVQFVVLDEADQMLSVG----------- 261 (475)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~-~~~~-----~~~~~vViDE~H~~~~~~----------- 261 (475)
+++.+++|+.+...+... ..++|++|||+.| ++++..+ .+.+ ..+.++|+||+|.++=..
T Consensus 152 Ltv~~i~gg~~~~~r~~~--y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~ 229 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEA--YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAA 229 (896)
T ss_pred ceEEEEeCCCCHHHHHHH--hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCC
Confidence 677888888776655443 3589999999999 8888776 2333 589999999999864110
Q ss_pred -----chHHHHHHHHhCCCC--------------C---------------------------------------------
Q 011901 262 -----FAEDVEVILERLPQN--------------R--------------------------------------------- 277 (475)
Q Consensus 262 -----~~~~~~~i~~~~~~~--------------~--------------------------------------------- 277 (475)
.......+...+... .
T Consensus 230 ~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL 309 (896)
T PRK13104 230 EDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAAL 309 (896)
T ss_pred ccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHH
Confidence 111112222222111 1
Q ss_pred -----------------------------------------------------------------------cEEEEccCC
Q 011901 278 -----------------------------------------------------------------------QSMMFSATM 286 (475)
Q Consensus 278 -----------------------------------------------------------------------~~i~~SAT~ 286 (475)
.+-+||+|.
T Consensus 310 ~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa 389 (896)
T PRK13104 310 KAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTA 389 (896)
T ss_pred HHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCC
Confidence 122233333
Q ss_pred ChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchH-HHHHHHHHhccCCcEEEEecChhhHHHHHHHHH
Q 011901 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS-IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA 365 (475)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~ 365 (475)
......+..-|.-+ .+.+ ............. .+..+..+|.. ++..+.+.+..|.++||||++++.++.++..|.
T Consensus 390 ~te~~Ef~~iY~l~--Vv~I-Ptnkp~~R~d~~d-~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~ 465 (896)
T PRK13104 390 DTEAYEFQQIYNLE--VVVI-PTNRSMIRKDEAD-LVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLK 465 (896)
T ss_pred hhHHHHHHHHhCCC--EEEC-CCCCCcceecCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHH
Confidence 22222222222111 0000 0000000000111 11122223433 334444556789999999999999999999997
Q ss_pred c-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCC--------------------------------
Q 011901 366 K-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV-------------------------------- 412 (475)
Q Consensus 366 ~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~-------------------------------- 412 (475)
+ ++++..+|+++.+.+++.+.+.|+.|. |+|||++++||+||.--
T Consensus 466 ~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (896)
T PRK13104 466 KENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDE 543 (896)
T ss_pred HcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhH
Confidence 5 589999999999999999999999995 99999999999999732
Q ss_pred ------CEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchh
Q 011901 413 ------DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (475)
Q Consensus 413 ------~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~ 451 (475)
=+||--..+.|.--=.|.+||+||-|.+|.+-.|.+=+|
T Consensus 544 V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 544 VIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred HHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 257777777788888899999999999999888887544
No 94
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.4e-27 Score=242.35 Aligned_cols=314 Identities=20% Similarity=0.212 Sum_probs=222.7
Q ss_pred CCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
|. .+++.|--..=.+.. ..+..+.||+|||+++.+|++-..+. |..+-+++||..||.|.++++..++
T Consensus 79 g~-~~~dvQlig~l~L~~--G~Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 79 GM-RHFDVQLIGGMVLHE--GKIAEMKTGEGKTLVATLPAYLNALT---------GKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred CC-CCCccHHHhhHHhcC--CchhhhhcCCCcHHHHHHHHHHHHHc---------CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 44 477777655544444 46999999999999999999644333 4558899999999999999999987
Q ss_pred C--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHH-HHHHHhCC------CCCCCccEEEEecccccccCC-------
Q 011901 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQMLSVG------- 261 (475)
Q Consensus 198 ~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~~~~~vViDE~H~~~~~~------- 261 (475)
. ++++.++.|+.+...+.... .++|++|||+.| .+++..+. .....+.++|+||+|.++=..
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLii 224 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLII 224 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceee
Confidence 6 56778888887776665554 489999999999 88887654 236789999999999864110
Q ss_pred ---------chHHHHHHHHhCCC---------------------------------------------------------
Q 011901 262 ---------FAEDVEVILERLPQ--------------------------------------------------------- 275 (475)
Q Consensus 262 ---------~~~~~~~i~~~~~~--------------------------------------------------------- 275 (475)
....+..+...+..
T Consensus 225 Sg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d 304 (830)
T PRK12904 225 SGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRD 304 (830)
T ss_pred ECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 11111222222200
Q ss_pred ------------------------------------------------------------CCcEEEEccCCChhHHHHHH
Q 011901 276 ------------------------------------------------------------NRQSMMFSATMPPWIRSLTN 295 (475)
Q Consensus 276 ------------------------------------------------------------~~~~i~~SAT~~~~~~~~~~ 295 (475)
-..+.+||+|.......+..
T Consensus 305 ~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~ 384 (830)
T PRK12904 305 VDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFRE 384 (830)
T ss_pred CcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHH
Confidence 02345667766555444444
Q ss_pred hhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHH-hccCCcEEEEecChhhHHHHHHHHHc-cCCcccc
Q 011901 296 KYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPL 373 (475)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~ 373 (475)
.|.-+-..+ ............ ..+..+..+|...+...+.+ +..+.++||||++++.++.+++.|.+ ++++..+
T Consensus 385 iY~l~vv~I---Ptnkp~~r~d~~-d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vL 460 (830)
T PRK12904 385 IYNLDVVVI---PTNRPMIRIDHP-DLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVL 460 (830)
T ss_pred HhCCCEEEc---CCCCCeeeeeCC-CeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEec
Confidence 443221111 111110000111 11223444566666666554 45788999999999999999999975 5899999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCC--------------------------------------CEE
Q 011901 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV--------------------------------------DLI 415 (475)
Q Consensus 374 h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~--------------------------------------~~v 415 (475)
|++ +.+|+..+..|..+...|+|||++++||+||+-- =+|
T Consensus 461 nak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhV 538 (830)
T PRK12904 461 NAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHV 538 (830)
T ss_pred cCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEE
Confidence 996 7899999999999999999999999999999753 267
Q ss_pred EEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchh
Q 011901 416 IHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (475)
Q Consensus 416 i~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~ 451 (475)
|--..+.|.---.|.+||+||.|.+|.+-.|.+-+|
T Consensus 539 igTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 539 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred EecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 777788888888999999999999999988888554
No 95
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=2.5e-27 Score=243.44 Aligned_cols=314 Identities=19% Similarity=0.268 Sum_probs=230.1
Q ss_pred CCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
-.++|-++|++++..+.+|.++++++|||||||.++-.++...+.+ +-++++..|.++|.+|.++++...+
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---------~qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 116 YPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---------GQRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---------CCceEeccchhhhhhhHHHHHHHHh
Confidence 3457999999999999999999999999999999998888777754 5669999999999999999999887
Q ss_pred CCC--ceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCC
Q 011901 198 PSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (475)
Q Consensus 198 ~~~--~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~ 275 (475)
.+. .+.+.+|+.. ++.++.++|+|.+.|.+++-++...+..+..||+||+|.+.+...+..++.++-.+|.
T Consensus 187 gdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~ 259 (1041)
T COG4581 187 GDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPD 259 (1041)
T ss_pred hhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCC
Confidence 643 2355566654 4567899999999999999988878999999999999999999999999999999999
Q ss_pred CCcEEEEccCCChhHHH--HHHhhcCCCcEEEecCCCcccc----ccCeeEEEEeccCc---------------------
Q 011901 276 NRQSMMFSATMPPWIRS--LTNKYLKNPLTVDLVGDSDQKL----ADGISLYSIATSMY--------------------- 328 (475)
Q Consensus 276 ~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--------------------- 328 (475)
..+++++|||+++...- ..+..-..+..+........+. ......+.......
T Consensus 260 ~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~ 339 (1041)
T COG4581 260 HVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKV 339 (1041)
T ss_pred CCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhc
Confidence 99999999999875321 2221112222221111110000 00000000000000
Q ss_pred --------------------------cchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc----------------
Q 011901 329 --------------------------EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK---------------- 366 (475)
Q Consensus 329 --------------------------~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~---------------- 366 (475)
.....+..+.. ...-++++|+-++..|+..+..+..
T Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~i 417 (1041)
T COG4581 340 RETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREI 417 (1041)
T ss_pred cccCccccccccccccccCCcccccccchHHHhhhhh--hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHH
Confidence 00111222211 1345899999999999877766642
Q ss_pred -------------c-------------CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEE---
Q 011901 367 -------------S-------------YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH--- 417 (475)
Q Consensus 367 -------------~-------------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~--- 417 (475)
+ .++..+|++|-+..|..+...|..|-++|++||.+++.|+|.|.-++|+-
T Consensus 418 i~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~ 497 (1041)
T COG4581 418 IDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLS 497 (1041)
T ss_pred HHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeE
Confidence 0 12446799999999999999999999999999999999999997766651
Q ss_pred -cC----CCCChhHHHHhhhccCCCCC--CCeEEEEecc
Q 011901 418 -YE----LPNTSETFVHRTGRTGRAGK--KGSAILIYTD 449 (475)
Q Consensus 418 -~~----~p~~~~~~~Q~~GR~gR~~~--~g~~~~~~~~ 449 (475)
+| .+-++..|+|+.|||||.|. .|.++++..+
T Consensus 498 K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 498 KFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred EecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 22 23378899999999999875 4777777444
No 96
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.1e-28 Score=236.55 Aligned_cols=311 Identities=21% Similarity=0.260 Sum_probs=236.1
Q ss_pred cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
..++.|-|+|..|+..+-++..+++.|.|.+|||.++-.++...+.+ +-++++..|-++|.+|-|+++..-
T Consensus 125 ~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---------kQRVIYTSPIKALSNQKYREl~~E 195 (1041)
T KOG0948|consen 125 TYPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---------KQRVIYTSPIKALSNQKYRELLEE 195 (1041)
T ss_pred CCCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---------cCeEEeeChhhhhcchhHHHHHHH
Confidence 34578999999999999999999999999999999998888888744 667999999999999999999988
Q ss_pred CCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCC
Q 011901 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (475)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~ 276 (475)
|++. .+.+|+.+ ++..+..+|+|.+.|..++-++.--++.+..||+||+|.|-+...+..|+.-+-.+|++
T Consensus 196 F~DV--GLMTGDVT-------InP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~ 266 (1041)
T KOG0948|consen 196 FKDV--GLMTGDVT-------INPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDN 266 (1041)
T ss_pred hccc--ceeeccee-------eCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEecccc
Confidence 7654 45667765 34558899999999999998887778899999999999999999999999888899999
Q ss_pred CcEEEEccCCChhHHH--HHHhhcCCCcEEEecCCCccccccCeeEEEEe---------ccCcc---c------------
Q 011901 277 RQSMMFSATMPPWIRS--LTNKYLKNPLTVDLVGDSDQKLADGISLYSIA---------TSMYE---K------------ 330 (475)
Q Consensus 277 ~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~---~------------ 330 (475)
.+.+++|||+|+..+- .....-..|..+...+... ..+++|.++ .+... .
T Consensus 267 vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRP----TPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~ 342 (1041)
T KOG0948|consen 267 VRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRP----TPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRK 342 (1041)
T ss_pred ceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCC----CcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhc
Confidence 9999999999875422 2222223444443221111 111111111 10000 0
Q ss_pred -------------------------hHHHHHHHHHh--ccCCcEEEEecChhhHHHHHHHHHc-----------------
Q 011901 331 -------------------------PSIIGQLITEH--AKGGKCIVFTQTKRDADRLAHAMAK----------------- 366 (475)
Q Consensus 331 -------------------------~~~l~~l~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~----------------- 366 (475)
..-+..+++.. .+..++|||+-++++|+.++..+.+
T Consensus 343 ~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~ 422 (1041)
T KOG0948|consen 343 AGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFN 422 (1041)
T ss_pred cCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHH
Confidence 00111222211 1345899999999999999887754
Q ss_pred -----------------------cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEc----C
Q 011901 367 -----------------------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHY----E 419 (475)
Q Consensus 367 -----------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~----~ 419 (475)
..++.++||++-+--++-+.-.|..|-+++|+||...+.|+|.|.-++|+-. |
T Consensus 423 nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfD 502 (1041)
T KOG0948|consen 423 NAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFD 502 (1041)
T ss_pred HHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccC
Confidence 1346788999999999999999999999999999999999999987776632 1
Q ss_pred ---CCC-ChhHHHHhhhccCCCCC--CCeEEEEecc
Q 011901 420 ---LPN-TSETFVHRTGRTGRAGK--KGSAILIYTD 449 (475)
Q Consensus 420 ---~p~-~~~~~~Q~~GR~gR~~~--~g~~~~~~~~ 449 (475)
+.| |.-.|+|+.|||||.|. .|.|++++++
T Consensus 503 G~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 503 GKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred CcceeeecccceEEecccccccCCCCCceEEEEecC
Confidence 222 67789999999999875 5788888775
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.2e-27 Score=241.80 Aligned_cols=314 Identities=19% Similarity=0.245 Sum_probs=215.3
Q ss_pred CCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
|. .|++.|.-+.=.+..| .+..+.||+|||+++.+|++..... |.++.+++||..||.|.++++..++
T Consensus 78 g~-~~~dvQlig~l~l~~G--~iaEm~TGEGKTLvA~l~a~l~al~---------G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 78 GL-RPFDVQIIGGIVLHEG--NIAEMKTGEGKTLTATLPVYLNALT---------GKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred CC-CCchhHHHHHHHHhcC--CcccccCCCCCcHHHHHHHHHHHHc---------CCCeEEEeccHHHHHhhHHHHHHHH
Confidence 44 4777786655455444 4999999999999999998877755 8889999999999999999999887
Q ss_pred C--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHH-HHHHhCC------CCCCCccEEEEecccccccCC-------
Q 011901 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI-DLIKRNA------LNLSEVQFVVLDEADQMLSVG------- 261 (475)
Q Consensus 198 ~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~-~~l~~~~------~~~~~~~~vViDE~H~~~~~~------- 261 (475)
. ++++.++.++.+...+.. ...+||+.||...|- +++..+. .....+.+.||||+|.++=..
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~--~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLii 223 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRA--AYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLII 223 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHH--HhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceec
Confidence 6 466777777665554433 345799999998773 3333321 124568899999999764110
Q ss_pred ---------chHHHHHHHHhCCC---------------------------------------------------------
Q 011901 262 ---------FAEDVEVILERLPQ--------------------------------------------------------- 275 (475)
Q Consensus 262 ---------~~~~~~~i~~~~~~--------------------------------------------------------- 275 (475)
....+..+...+..
T Consensus 224 sg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~ 303 (796)
T PRK12906 224 SGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQ 303 (796)
T ss_pred CCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHH
Confidence 01111111111100
Q ss_pred -----------------------------------------------------------------------CCcEEEEcc
Q 011901 276 -----------------------------------------------------------------------NRQSMMFSA 284 (475)
Q Consensus 276 -----------------------------------------------------------------------~~~~i~~SA 284 (475)
-.++.+||+
T Consensus 304 Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTG 383 (796)
T PRK12906 304 ALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTG 383 (796)
T ss_pred HHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCC
Confidence 012345555
Q ss_pred CCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHH-HHhccCCcEEEEecChhhHHHHHHH
Q 011901 285 TMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI-TEHAKGGKCIVFTQTKRDADRLAHA 363 (475)
Q Consensus 285 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~~~lVf~~~~~~~~~l~~~ 363 (475)
|.......+...|.-+ .+.+ +........... ..+..+..+|...+...+ ..+..+.++||||++++.++.++..
T Consensus 384 Ta~~e~~Ef~~iY~l~--vv~I-Ptnkp~~r~d~~-d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~ 459 (796)
T PRK12906 384 TAKTEEEEFREIYNME--VITI-PTNRPVIRKDSP-DLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHL 459 (796)
T ss_pred CCHHHHHHHHHHhCCC--EEEc-CCCCCeeeeeCC-CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHH
Confidence 5544333333333211 1111 111100000001 111122334555555444 3456789999999999999999999
Q ss_pred HHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCC---CCC-----EEEEcCCCCChhHHHHhhhcc
Q 011901 364 MAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP---NVD-----LIIHYELPNTSETFVHRTGRT 434 (475)
Q Consensus 364 L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~---~~~-----~vi~~~~p~~~~~~~Q~~GR~ 434 (475)
|.+ ++++..+|+++...++..+...++.|. |+|||++++||.||+ ++. +||+++.|.|...|.|++||+
T Consensus 460 L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRt 537 (796)
T PRK12906 460 LDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRS 537 (796)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhh
Confidence 975 589999999998888888888777777 999999999999995 788 999999999999999999999
Q ss_pred CCCCCCCeEEEEecchh
Q 011901 435 GRAGKKGSAILIYTDQQ 451 (475)
Q Consensus 435 gR~~~~g~~~~~~~~~~ 451 (475)
||.|.+|.+..+++.+|
T Consensus 538 GRqG~~G~s~~~~sleD 554 (796)
T PRK12906 538 GRQGDPGSSRFYLSLED 554 (796)
T ss_pred ccCCCCcceEEEEeccc
Confidence 99999999999998764
No 98
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2e-26 Score=233.68 Aligned_cols=145 Identities=21% Similarity=0.333 Sum_probs=123.1
Q ss_pred CCCCCHHHHHHHH-----HcCCCCC---cHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCC
Q 011901 103 KLDISQDIVAALA-----RRGISKL---FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (475)
Q Consensus 103 ~~~l~~~l~~~l~-----~~~~~~l---~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 174 (475)
.+.+..++.+.+. ..|+..| +|+|.++++.+..+++++.+++||+|||++|++|++..+.. +.
T Consensus 66 afal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------g~ 136 (970)
T PRK12899 66 AYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------GK 136 (970)
T ss_pred HhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------cC
Confidence 5778888877776 5677777 99999999999999999999999999999999999987754 22
Q ss_pred eEEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHH-HHHHHhCCCCCC-------
Q 011901 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNALNLS------- 244 (475)
Q Consensus 175 ~~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~~~~~------- 244 (475)
.++|++||++||.|..+++..++. ++++.+++||.+...+.... +++|+||||++| .+++..+.+.++
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr 214 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGR 214 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcc
Confidence 489999999999999999988764 56788888998877766544 589999999999 999988765554
Q ss_pred CccEEEEecccccc
Q 011901 245 EVQFVVLDEADQML 258 (475)
Q Consensus 245 ~~~~vViDE~H~~~ 258 (475)
.+.++|+||||.|+
T Consensus 215 ~~~~~IIDEADsmL 228 (970)
T PRK12899 215 GFYFAIIDEVDSIL 228 (970)
T ss_pred cccEEEEechhhhh
Confidence 56899999999875
No 99
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.95 E-value=3.6e-26 Score=239.38 Aligned_cols=318 Identities=19% Similarity=0.258 Sum_probs=215.4
Q ss_pred CCcHHHHHhhhhHh----cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.|++||.++++.+. .+.+.|+..++|.|||+..+ .++..+... .+....+|||||. .+..||.+++.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~-----~~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEY-----RGITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHh-----cCCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 68999999999875 46789999999999998763 444444321 1223458999995 6678899999999
Q ss_pred CCCCceEEEEcCcchhHHHHH---hhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhC
Q 011901 197 APSLDTICVYGGTPISHQMRA---LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (475)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~ 273 (475)
++.+.+..++|.......... .....+|+|+|++.+...... +.--++++||+||+|++.+. .......+..+
T Consensus 242 ~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L 317 (1033)
T PLN03142 242 CPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLF 317 (1033)
T ss_pred CCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHHHHh
Confidence 998888877776543322211 124589999999998654321 22335789999999998774 34445556666
Q ss_pred CCCCcEEEEccCCChhH-HHH---HHhh-------------------------------------------------cCC
Q 011901 274 PQNRQSMMFSATMPPWI-RSL---TNKY-------------------------------------------------LKN 300 (475)
Q Consensus 274 ~~~~~~i~~SAT~~~~~-~~~---~~~~-------------------------------------------------~~~ 300 (475)
. ....+++|+||..+. ..+ .... +..
T Consensus 318 ~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPp 396 (1033)
T PLN03142 318 S-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 396 (1033)
T ss_pred h-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCC
Confidence 4 445789999984311 111 0000 000
Q ss_pred CcEEEecCCCc--cc----------------------ccc---------Cee----------EE---EEeccCccchHHH
Q 011901 301 PLTVDLVGDSD--QK----------------------LAD---------GIS----------LY---SIATSMYEKPSII 334 (475)
Q Consensus 301 ~~~~~~~~~~~--~~----------------------~~~---------~~~----------~~---~~~~~~~~~~~~l 334 (475)
.....+..... +. ... ... .+ ........|...+
T Consensus 397 K~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lL 476 (1033)
T PLN03142 397 KKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLL 476 (1033)
T ss_pred ceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHH
Confidence 00000000000 00 000 000 00 0000112344555
Q ss_pred HHHHHHh-ccCCcEEEEecChhhHHHHHHHHH-ccCCcccccCCCCHHHHHHHHHHHhcC---CCcEEEecCccccCCCC
Q 011901 335 GQLITEH-AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG---RFNILIATDVAARGLDV 409 (475)
Q Consensus 335 ~~l~~~~-~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~h~~~~~~~r~~~~~~f~~g---~~~vlvaT~~~~~Gidi 409 (475)
..++... ..+.++||||......+.+.++|. .++.+..+||+++..+|..+++.|.+. ...+|++|.+.+.|+|+
T Consensus 477 dkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 477 DKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred HHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 5665544 357899999999999999998885 458889999999999999999999753 34578999999999999
Q ss_pred CCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeE--EEEecch
Q 011901 410 PNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSA--ILIYTDQ 450 (475)
Q Consensus 410 ~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~--~~~~~~~ 450 (475)
..+++||+||++|++....|++||+.|.|+...+ +.+++..
T Consensus 557 t~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 557 ATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred hhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999987554 3455543
No 100
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=1.5e-26 Score=230.58 Aligned_cols=337 Identities=23% Similarity=0.319 Sum_probs=230.5
Q ss_pred CCHHHHH-HHHHcCCCCCcHHHHHhh--hhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCC
Q 011901 106 ISQDIVA-ALARRGISKLFPIQKAVL--EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (475)
Q Consensus 106 l~~~l~~-~l~~~~~~~l~~~Q~~~i--~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (475)
+++.+.+ ....+|+..++.||.+++ +.++.++|.+...||+.|||+++-+-++..+.-. +..++++.|.
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--------rr~~llilp~ 278 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--------RRNVLLILPY 278 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--------hhceeEecce
Confidence 3444444 345578999999999987 4677889999999999999999999998877652 3348999999
Q ss_pred HHHHHHHHHHHHhhCCCC--ceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHh--CCCCCCCccEEEEecccccc
Q 011901 183 RELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--NALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 183 ~~La~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~--~~~~~~~~~~vViDE~H~~~ 258 (475)
...+......+..+..++ .+...+|..+.... ...-++.|+|.++-..+++. ..-.+..+++||+||.|.+.
T Consensus 279 vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~ 354 (1008)
T KOG0950|consen 279 VSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIG 354 (1008)
T ss_pred eehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeee
Confidence 888888777777665433 33333333332221 23358999999987655543 12236779999999999999
Q ss_pred cCCchHHHHHHHHhC-----CCCCcEEEEccCCChhHHHHHHhhcCCCcEEE--------ecCCCcccccc--------C
Q 011901 259 SVGFAEDVEVILERL-----PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD--------LVGDSDQKLAD--------G 317 (475)
Q Consensus 259 ~~~~~~~~~~i~~~~-----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--------~ 317 (475)
+.+.+..++.++..+ ....|+|+||||+++ ..+...++....... ........+.. .
T Consensus 355 d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N--~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ 432 (1008)
T KOG0950|consen 355 DKGRGAILELLLAKILYENLETSVQIIGMSATIPN--NSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLRE 432 (1008)
T ss_pred ccccchHHHHHHHHHHHhccccceeEeeeecccCC--hHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHH
Confidence 999888888777654 334579999999987 333444433221111 00000000000 0
Q ss_pred eeEEEEeccCccchHHHHHHHHH-hccCCcEEEEecChhhHHHHHHHHHc------------------------------
Q 011901 318 ISLYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK------------------------------ 366 (475)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~------------------------------ 366 (475)
+..........+..+.+..+..+ ..++.++||||+++..|+.++..+.+
T Consensus 433 ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ 512 (1008)
T KOG0950|consen 433 IANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGI 512 (1008)
T ss_pred hhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcc
Confidence 00000000000011122222222 33455799999999999987755532
Q ss_pred ---------cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEc---CC-CCChhHHHHhhhc
Q 011901 367 ---------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHY---EL-PNTSETFVHRTGR 433 (475)
Q Consensus 367 ---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~---~~-p~~~~~~~Q~~GR 433 (475)
.+++..+|.+++.++|+.+...|++|...|++||+.++.|+|.|..++++-. +. ..+..+|.|++||
T Consensus 513 ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GR 592 (1008)
T KOG0950|consen 513 LDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGR 592 (1008)
T ss_pred cchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhh
Confidence 2356778999999999999999999999999999999999999988888743 22 2377899999999
Q ss_pred cCCCCC--CCeEEEEecchhHHHHH
Q 011901 434 TGRAGK--KGSAILIYTDQQARQVK 456 (475)
Q Consensus 434 ~gR~~~--~g~~~~~~~~~~~~~~~ 456 (475)
|||+|. .|.+++++.+.+...+.
T Consensus 593 AGR~gidT~GdsiLI~k~~e~~~~~ 617 (1008)
T KOG0950|consen 593 AGRTGIDTLGDSILIIKSSEKKRVR 617 (1008)
T ss_pred hhhcccccCcceEEEeeccchhHHH
Confidence 999864 58899999998876554
No 101
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=2.9e-26 Score=198.22 Aligned_cols=163 Identities=31% Similarity=0.539 Sum_probs=138.1
Q ss_pred cHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCC--C
Q 011901 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--L 200 (475)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~--~ 200 (475)
||+|.++++.+.+++++++.+|||+|||++++++++..+.+. ...++++++|+++|++|+.+++.+++.. .
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 73 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-------KDARVLIIVPTRALAEQQFERLRKFFSNTNV 73 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-------CCceEEEEeeccccccccccccccccccccc
Confidence 799999999999999999999999999999999999888662 2348999999999999999999999864 6
Q ss_pred ceEEEEcCcchh-HHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCC--CC
Q 011901 201 DTICVYGGTPIS-HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NR 277 (475)
Q Consensus 201 ~~~~~~~~~~~~-~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~--~~ 277 (475)
.+..++++.... .....+.++++|+|+||++|.+.+..+...+.++++||+||+|.+..+.+...+..++..+.. +.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~ 153 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNI 153 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTS
T ss_pred ccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCC
Confidence 777778877755 344445567999999999999999886667778999999999999987788888888888733 58
Q ss_pred cEEEEccCCChhHHH
Q 011901 278 QSMMFSATMPPWIRS 292 (475)
Q Consensus 278 ~~i~~SAT~~~~~~~ 292 (475)
++++||||+++.+++
T Consensus 154 ~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 154 QIILLSATLPSNVEK 168 (169)
T ss_dssp EEEEEESSSTHHHHH
T ss_pred cEEEEeeCCChhHhh
Confidence 999999999965543
No 102
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=5e-25 Score=221.99 Aligned_cols=312 Identities=20% Similarity=0.295 Sum_probs=221.2
Q ss_pred CCcHHHHHhhhhHhcC----CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 121 KLFPIQKAVLEPAMQG----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~----~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.+.+-|..+.+.+... ...++.|.||||||.+|+-.+-..+.+ |.++|+++|-.+|..|+.++|+..
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---------CCEEEEEeccccchHHHHHHHHHH
Confidence 5778899999999866 569999999999999997777766644 889999999999999999999999
Q ss_pred CCCCceEEEEcCcchhHHHH----HhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCC-----chHHHH
Q 011901 197 APSLDTICVYGGTPISHQMR----ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-----FAEDVE 267 (475)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~-----~~~~~~ 267 (475)
|+ .++.+++++.+..++.. ...+...|+|||-..++ ..++++++||+||-|.-.-.+ +...--
T Consensus 269 Fg-~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdv 340 (730)
T COG1198 269 FG-AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDV 340 (730)
T ss_pred hC-CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHH
Confidence 96 77778787776665544 33467999999987776 468999999999999644221 222222
Q ss_pred HHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccc-----hHHHHHHHHHhc
Q 011901 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-----PSIIGQLITEHA 342 (475)
Q Consensus 268 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~l~~~~~ 342 (475)
++++.-..++++|+-||||.-+........ ....+.+...........+............ ..++..+-+...
T Consensus 341 A~~Ra~~~~~pvvLgSATPSLES~~~~~~g--~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~ 418 (730)
T COG1198 341 AVLRAKKENAPVVLGSATPSLESYANAESG--KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLE 418 (730)
T ss_pred HHHHHHHhCCCEEEecCCCCHHHHHhhhcC--ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHh
Confidence 333444467889999999876544444222 2222222222221212223322222222222 456677777778
Q ss_pred cCCcEEEEecChhhH------------------------------------------------------------HHHHH
Q 011901 343 KGGKCIVFTQTKRDA------------------------------------------------------------DRLAH 362 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~------------------------------------------------------------~~l~~ 362 (475)
.|.++|+|.|.+..+ +++.+
T Consensus 419 ~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteriee 498 (730)
T COG1198 419 RGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEE 498 (730)
T ss_pred cCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHH
Confidence 899999999986643 35555
Q ss_pred HHHccC---CcccccCCCCH--HHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCC------------Chh
Q 011901 363 AMAKSY---NCEPLHGDISQ--SQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN------------TSE 425 (475)
Q Consensus 363 ~L~~~~---~~~~~h~~~~~--~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~------------~~~ 425 (475)
.|.+.| ++..+.++.+. ..-+..+..|.+|+.+|||.|+++..|.|+|+++.|...|... ...
T Consensus 499 eL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fq 578 (730)
T COG1198 499 ELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQ 578 (730)
T ss_pred HHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHH
Confidence 555433 34455555433 3456789999999999999999999999999999988776542 345
Q ss_pred HHHHhhhccCCCCCCCeEEEEecchh
Q 011901 426 TFVHRTGRTGRAGKKGSAILIYTDQQ 451 (475)
Q Consensus 426 ~~~Q~~GR~gR~~~~g~~~~~~~~~~ 451 (475)
-+.|-.||+||.+++|.+++-...-+
T Consensus 579 ll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 579 LLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred HHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 57899999999999999887665544
No 103
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.4e-25 Score=215.06 Aligned_cols=303 Identities=18% Similarity=0.331 Sum_probs=206.6
Q ss_pred CcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC-C-
Q 011901 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-S- 199 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~-~- 199 (475)
...+-.+.+..+.+++-+++.|+||||||. .+| +.+.+ .+......+.+..|+|.-|..+++++.+-.. .
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKST--Qip--QyL~e----aG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~l 123 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKST--QIP--QYLAE----AGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQL 123 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCccc--cHh--HHHHh----cccccCCcEEeecCchHHHHHHHHHHHHHhCCCc
Confidence 344556778888888899999999999997 344 22222 1223344599999999888887777655332 2
Q ss_pred ---CceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccc-cccCCchHHHHHHHHhC--
Q 011901 200 ---LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFAEDVEVILERL-- 273 (475)
Q Consensus 200 ---~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~-~~~~~~~~~~~~i~~~~-- 273 (475)
....+-+.+.. .....|.+.|.++|++.+..+.. ++.+++||+||||. .. ..+.+..+++.+
T Consensus 124 G~~VGY~IRFed~t--------s~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl---~TDiLlGlLKki~~ 191 (674)
T KOG0922|consen 124 GEEVGYTIRFEDST--------SKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSL---HTDILLGLLKKILK 191 (674)
T ss_pred CceeeeEEEecccC--------CCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhh---HHHHHHHHHHHHHh
Confidence 22222232222 12368999999999988876664 88999999999995 22 223333333333
Q ss_pred -CCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEe-ccCccchHHHHHHHHHh--ccCCcEEE
Q 011901 274 -PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSMYEKPSIIGQLITEH--AKGGKCIV 349 (475)
Q Consensus 274 -~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~--~~~~~~lV 349 (475)
+++..+|+||||+.. ..+...|.+.+... +.+. ..+ +..++.. .....-...+...++-+ .+.+-+||
T Consensus 192 ~R~~LklIimSATlda--~kfS~yF~~a~i~~-i~GR---~fP--Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILv 263 (674)
T KOG0922|consen 192 KRPDLKLIIMSATLDA--EKFSEYFNNAPILT-IPGR---TFP--VEILYLKEPTADYVDAALITVIQIHLTEPPGDILV 263 (674)
T ss_pred cCCCceEEEEeeeecH--HHHHHHhcCCceEe-ecCC---CCc--eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEE
Confidence 345689999999886 44444444434333 2221 111 1111111 11111122222222222 45679999
Q ss_pred EecChhhHHHHHHHHHcc---C------CcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCC
Q 011901 350 FTQTKRDADRLAHAMAKS---Y------NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL 420 (475)
Q Consensus 350 f~~~~~~~~~l~~~L~~~---~------~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~ 420 (475)
|....++.+..++.|.+. . -+..+||.++.+++.++++.-..|..+|+++|++++..+.||++..||+-+.
T Consensus 264 FLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~ 343 (674)
T KOG0922|consen 264 FLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGF 343 (674)
T ss_pred EeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCc
Confidence 999999999999988653 1 1357899999999999999988999999999999999999999999996553
Q ss_pred ------------------CCChhHHHHhhhccCCCCCCCeEEEEecchhHH
Q 011901 421 ------------------PNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (475)
Q Consensus 421 ------------------p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~ 453 (475)
|-|-++..||.|||||.| +|.|+-+|++++.+
T Consensus 344 vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 344 VKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYD 393 (674)
T ss_pred eEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHh
Confidence 447788999999999995 89999999986543
No 104
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=2.5e-25 Score=227.38 Aligned_cols=309 Identities=22% Similarity=0.317 Sum_probs=214.2
Q ss_pred cHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC-CCc
Q 011901 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLD 201 (475)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~-~~~ 201 (475)
+....+.+..+..++.+++.|+||||||...-..+++.. .+.+.++.+.-|+|.-|..+++.+.+... .+.
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g--------~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEG--------LGIAGKIGCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhh--------cccCCeEEecCchHHHHHHHHHHHHHHhCCCcC
Confidence 455667777777888899999999999974333333322 13456799999999888888888776543 222
Q ss_pred eEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccc-cccCCchHH-HHHHHHhCCCCCcE
Q 011901 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFAED-VEVILERLPQNRQS 279 (475)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~-~~~~~~~~~-~~~i~~~~~~~~~~ 279 (475)
-.+-|.-.- .........|-++|.+.|...+..... ++.+++||+||+|. .++.++.-. +..++...+++..+
T Consensus 124 ~~VGY~iRf----e~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 124 ETVGYSIRF----ESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred ceeeEEEEe----eccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 112111100 001123468999999999999987665 89999999999994 443333332 33445566667899
Q ss_pred EEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEe-ccCcc-chHHHHHHHHHh--ccCCcEEEEecChh
Q 011901 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSMYE-KPSIIGQLITEH--AKGGKCIVFTQTKR 355 (475)
Q Consensus 280 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~l~~l~~~~--~~~~~~lVf~~~~~ 355 (475)
|+||||+.. +.+...+...|... +.+. ..+ +..++.. ....+ -...+...+..+ ...|-+|||.+..+
T Consensus 199 IimSATld~--~rfs~~f~~apvi~-i~GR---~fP--Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~ 270 (845)
T COG1643 199 IIMSATLDA--ERFSAYFGNAPVIE-IEGR---TYP--VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQR 270 (845)
T ss_pred EEEecccCH--HHHHHHcCCCCEEE-ecCC---ccc--eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHH
Confidence 999999987 45555554444433 2111 111 1222211 11111 223333333333 23578999999999
Q ss_pred hHHHHHHHHHc-----cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCC----------
Q 011901 356 DADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL---------- 420 (475)
Q Consensus 356 ~~~~l~~~L~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~---------- 420 (475)
+.+.+++.|.+ ...+.++||.++.+++.++++.-..|+.+|++||++++.++.||++..||.-+.
T Consensus 271 EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~ 350 (845)
T COG1643 271 EIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRT 350 (845)
T ss_pred HHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccccc
Confidence 99999999976 255788999999999999998888888889999999999999999999997553
Q ss_pred --------CCChhHHHHhhhccCCCCCCCeEEEEecchhHH
Q 011901 421 --------PNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (475)
Q Consensus 421 --------p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~ 453 (475)
|-|-++..||.||+||.+ +|.||-+|++++..
T Consensus 351 g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 351 GLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred CceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 346677899999999994 89999999985543
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=4.1e-25 Score=229.97 Aligned_cols=322 Identities=20% Similarity=0.218 Sum_probs=215.4
Q ss_pred CCcHHHHHhhhhHhcC---C-cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 121 KLFPIQKAVLEPAMQG---R-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~---~-~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
...+.|..++..+... . .+++.+|||+|||.+.+++++..+.+. .....+++++.|++.+.++.++.+++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-----~~~~~r~i~vlP~~t~ie~~~~r~~~~ 269 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-----IKLKSRVIYVLPFRTIIEDMYRRAKEI 269 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-----ccccceEEEEccHHHHHHHHHHHHHhh
Confidence 3589999999988864 4 688999999999999999888776552 124678999999999999999999987
Q ss_pred CCCCceEEE-EcCcchhHHHHHhh---------------cCCcEEEEccHHHHHHHH-hCCCC---CCCccEEEEecccc
Q 011901 197 APSLDTICV-YGGTPISHQMRALD---------------YGVDAVVGTPGRVIDLIK-RNALN---LSEVQFVVLDEADQ 256 (475)
Q Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~---------------~~~~Ilv~T~~~l~~~l~-~~~~~---~~~~~~vViDE~H~ 256 (475)
+....+... ..+........... ....+.++|+..+..... ..... .-..+.+|+||+|.
T Consensus 270 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 270 FGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred hcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 654443333 12221111111000 113344444444333111 11111 01245799999998
Q ss_pred cccCCchHHHHHHHHhC-CCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccc--hHH
Q 011901 257 MLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK--PSI 333 (475)
Q Consensus 257 ~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 333 (475)
+........+..++..+ ..+..+|+||||+|+...............+........................+. ...
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhh
Confidence 87763233333333333 246789999999999999888887766655543221110000100000000111111 134
Q ss_pred HHHHHHHhccCCcEEEEecChhhHHHHHHHHHccCC-cccccCCCCHHHHHHHHHHHh----cCCCcEEEecCccccCCC
Q 011901 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYN-CEPLHGDISQSQRERTLSAFR----DGRFNILIATDVAARGLD 408 (475)
Q Consensus 334 l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~h~~~~~~~r~~~~~~f~----~g~~~vlvaT~~~~~Gid 408 (475)
..........+.+++|.|||+..|.+++..|+.... +..+||++...+|.+.++.+. .+...|+|||++++.|+|
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 445556667889999999999999999999987766 999999999999998887654 578899999999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHhhhccCCCC--CCCeEEEEecch
Q 011901 409 VPNVDLIIHYELPNTSETFVHRTGRTGRAG--KKGSAILIYTDQ 450 (475)
Q Consensus 409 i~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~--~~g~~~~~~~~~ 450 (475)
+ +.+++|--=+| +..++||.||++|.| ..|..+++-...
T Consensus 510 i-dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 510 I-DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred c-ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 9 68888865555 778999999999988 567777666543
No 106
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.3e-24 Score=220.43 Aligned_cols=312 Identities=21% Similarity=0.249 Sum_probs=210.3
Q ss_pred CcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC--C
Q 011901 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--S 199 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~--~ 199 (475)
+++.|. +-.+.-.+.-+..++||.|||+++.+|++...+. |..+.|++|+..||.|-.+++..++. +
T Consensus 83 ~ydVQl--iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~---------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 83 HFDVQL--LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALT---------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred cCchHH--hcchHhcCCccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 555664 4444434567999999999999999999876654 55599999999999999999887764 6
Q ss_pred CceEEEEcCcchhHHHHHhhcCCcEEEEccHHH-HHHHHhC-CCCC-----CCccEEEEecccccccCC-----------
Q 011901 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN-ALNL-----SEVQFVVLDEADQMLSVG----------- 261 (475)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~-~~~~-----~~~~~vViDE~H~~~~~~----------- 261 (475)
+++.++.++.+... +...+.++|++||++.| ++++..+ .... ..+.++||||+|.++-..
T Consensus 152 lsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~ 229 (908)
T PRK13107 152 LTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAA 229 (908)
T ss_pred CeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCC
Confidence 77777777766533 23345789999999999 8887765 2332 678899999999865321
Q ss_pred -----chHHHHHHHHhCCC-------------------C-----------------------------------------
Q 011901 262 -----FAEDVEVILERLPQ-------------------N----------------------------------------- 276 (475)
Q Consensus 262 -----~~~~~~~i~~~~~~-------------------~----------------------------------------- 276 (475)
....+..+...+.+ .
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~ 309 (908)
T PRK13107 230 EDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHH 309 (908)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHH
Confidence 11111111111100 0
Q ss_pred ---------------------------------------------------------------------------CcEEE
Q 011901 277 ---------------------------------------------------------------------------RQSMM 281 (475)
Q Consensus 277 ---------------------------------------------------------------------------~~~i~ 281 (475)
..+.+
T Consensus 310 i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~G 389 (908)
T PRK13107 310 VNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAG 389 (908)
T ss_pred HHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhc
Confidence 11223
Q ss_pred EccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchH-HHHHHHHHhccCCcEEEEecChhhHHHH
Q 011901 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS-IIGQLITEHAKGGKCIVFTQTKRDADRL 360 (475)
Q Consensus 282 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~~~~lVf~~~~~~~~~l 360 (475)
||+|.......+..-|.-+-..+ .............. +.....+|.. ++..+.+.+..|.++||||.+++.++.+
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~I---PTnkp~~R~d~~d~-iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~l 465 (908)
T PRK13107 390 MTGTADTEAFEFQHIYGLDTVVV---PTNRPMVRKDMADL-VYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELL 465 (908)
T ss_pred ccCCChHHHHHHHHHhCCCEEEC---CCCCCccceeCCCc-EEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHH
Confidence 33333332222222221111110 00000000001111 1122233333 3444444567899999999999999999
Q ss_pred HHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCC---------------------------
Q 011901 361 AHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV--------------------------- 412 (475)
Q Consensus 361 ~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~--------------------------- 412 (475)
+..|.+ ++++..+|+++++.++..+.+.|+.|. |+|||++++||.||.--
T Consensus 466 s~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (908)
T PRK13107 466 ARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQI 543 (908)
T ss_pred HHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHh
Confidence 999975 588999999999999999999999999 99999999999999732
Q ss_pred ----------CEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhH
Q 011901 413 ----------DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (475)
Q Consensus 413 ----------~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~ 452 (475)
=+||--..+.|.--=.|.+||+||-|.+|.+-.|.+-+|.
T Consensus 544 ~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 544 RHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred hHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 2677777888888888999999999999999888886553
No 107
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.92 E-value=5.7e-23 Score=211.82 Aligned_cols=296 Identities=18% Similarity=0.164 Sum_probs=179.1
Q ss_pred CcHHHHHhhhhHhc----------CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHH
Q 011901 122 LFPIQKAVLEPAMQ----------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (475)
Q Consensus 122 l~~~Q~~~i~~i~~----------~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (475)
++++|.+|+..+.. .+..+++++||||||++++..+...+ . ....+++|+++|+.+|..|+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~------~~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-E------LLKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-h------hcCCCeEEEEECcHHHHHHHHH
Confidence 78899999987642 24699999999999998866554333 2 1346789999999999999999
Q ss_pred HHHhhCCCCceEEEEcCcchhHHHHHh-hcCCcEEEEccHHHHHHHHhC--CCCCCCc-cEEEEecccccccCCchHHHH
Q 011901 192 EFHESAPSLDTICVYGGTPISHQMRAL-DYGVDAVVGTPGRVIDLIKRN--ALNLSEV-QFVVLDEADQMLSVGFAEDVE 267 (475)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~l~~~--~~~~~~~-~~vViDE~H~~~~~~~~~~~~ 267 (475)
.|..+..... .+..+...-...+ .....|+|+|.++|...+... ....... -+||+||||+... ..+.
T Consensus 312 ~f~~~~~~~~----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~----~~~~ 383 (667)
T TIGR00348 312 EFQSLQKDCA----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY----GELA 383 (667)
T ss_pred HHHhhCCCCC----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc----hHHH
Confidence 9998864211 1111111111222 234789999999998644331 1111122 2899999999632 2344
Q ss_pred HHH-HhCCCCCcEEEEccCCChhHHHHHHhhc----CCCcEEEecCCCccccccC----eeEEEEec-------------
Q 011901 268 VIL-ERLPQNRQSMMFSATMPPWIRSLTNKYL----KNPLTVDLVGDSDQKLADG----ISLYSIAT------------- 325 (475)
Q Consensus 268 ~i~-~~~~~~~~~i~~SAT~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~------------- 325 (475)
..+ +.+ ++...++|||||...........+ +.+. ... .....+.++ +.......
T Consensus 384 ~~l~~~~-p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i-~~Y--~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~ 459 (667)
T TIGR00348 384 KNLKKAL-KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYL-HRY--FITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFF 459 (667)
T ss_pred HHHHhhC-CCCcEEEEeCCCcccccccccccccCCCCCeE-EEe--eHHHHhhcCCeeeEEEEecchhhccChHHHHHHH
Confidence 444 344 457799999999642111111111 1111 100 001111111 00000000
Q ss_pred -----------cCccc--------------------hHHHHHHHHHh-----ccCCcEEEEecChhhHHHHHHHHHccC-
Q 011901 326 -----------SMYEK--------------------PSIIGQLITEH-----AKGGKCIVFTQTKRDADRLAHAMAKSY- 368 (475)
Q Consensus 326 -----------~~~~~--------------------~~~l~~l~~~~-----~~~~~~lVf~~~~~~~~~l~~~L~~~~- 368 (475)
....+ ......+++.. ..+++++|||.++..|..+.+.|.+.+
T Consensus 460 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~ 539 (667)
T TIGR00348 460 DEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELN 539 (667)
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcc
Confidence 00000 01111111111 124799999999999999998885432
Q ss_pred -----CcccccCCCCHH---------------------HHHHHHHHHhc-CCCcEEEecCccccCCCCCCCCEEEEcCCC
Q 011901 369 -----NCEPLHGDISQS---------------------QRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLIIHYELP 421 (475)
Q Consensus 369 -----~~~~~h~~~~~~---------------------~r~~~~~~f~~-g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p 421 (475)
....++++.+.+ ..+.+++.|++ +..+|||+++++.+|+|.|.+++++...+-
T Consensus 540 ~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKpl 619 (667)
T TIGR00348 540 EKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPL 619 (667)
T ss_pred cccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccc
Confidence 233444443221 23468888976 688999999999999999999999987766
Q ss_pred CChhHHHHhhhccCCC
Q 011901 422 NTSETFVHRTGRTGRA 437 (475)
Q Consensus 422 ~~~~~~~Q~~GR~gR~ 437 (475)
.+. .++|.+||+.|.
T Consensus 620 k~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 620 KYH-GLLQAIARTNRI 634 (667)
T ss_pred ccc-HHHHHHHHhccc
Confidence 654 589999999993
No 108
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.92 E-value=1e-22 Score=207.38 Aligned_cols=128 Identities=23% Similarity=0.437 Sum_probs=111.8
Q ss_pred HHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCC
Q 011901 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (475)
Q Consensus 332 ~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~ 410 (475)
.++..+......+.+++|||++.+.++.+++.|.+ ++++..+||++++.+|..++..|++|++.|+|||+.+++|+|+|
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 44555554556788999999999999999999975 58899999999999999999999999999999999999999999
Q ss_pred CCCEEEEcC-----CCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHH
Q 011901 411 NVDLIIHYE-----LPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460 (475)
Q Consensus 411 ~~~~vi~~~-----~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~ 460 (475)
++++||+++ .|.+..+|+||+||+||. ..|.|+++.+..+......|+.
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999988 688999999999999998 6899999999866544444443
No 109
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.3e-23 Score=201.25 Aligned_cols=300 Identities=17% Similarity=0.280 Sum_probs=207.4
Q ss_pred CcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCC-CCCeEEEEcCCHHHHHHHHHHHHhh-CCC
Q 011901 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG-RNPLCLVLAPTRELAKQVEKEFHES-APS 199 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~-~~~~~lil~Pt~~La~q~~~~~~~~-~~~ 199 (475)
.+++-.+.+.++...+.++|.|.||||||. .+| +.+.+. +.- .|.++-+..|++.-|..++.++.+- ...
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTT--QiP--QyL~Ea----Gytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvk 337 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIP--QYLYEA----GYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVK 337 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCccc--ccc--HHHHhc----ccccCCceEeecCcchHHHHHHHHHHHHHhCcc
Confidence 456667777888888889999999999997 455 223221 111 2445889999999999988776543 222
Q ss_pred Cc----eEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccc-cccCCchHHHHHHHHhCC
Q 011901 200 LD----TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFAEDVEVILERLP 274 (475)
Q Consensus 200 ~~----~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~-~~~~~~~~~~~~i~~~~~ 274 (475)
+. ...-+-+.. ....-|-++|.++|++.+.... .+..++++||||||. .+..+..-.+-.-+.+++
T Consensus 338 LG~eVGYsIRFEdcT--------SekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDIar~R 408 (902)
T KOG0923|consen 338 LGHEVGYSIRFEDCT--------SEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDIARFR 408 (902)
T ss_pred cccccceEEEecccc--------CcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC
Confidence 22 122222211 1225677899999998876654 488999999999994 333333333334455667
Q ss_pred CCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHh------ccCCcEE
Q 011901 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH------AKGGKCI 348 (475)
Q Consensus 275 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~------~~~~~~l 348 (475)
++..++++|||+.. ..+...|...|++... . .+.+ +..++.... ..+.+...+... .+.+-+|
T Consensus 409 pdLKllIsSAT~DA--ekFS~fFDdapIF~iP--G--RRyP--Vdi~Yt~~P---EAdYldAai~tVlqIH~tqp~GDIL 477 (902)
T KOG0923|consen 409 PDLKLLISSATMDA--EKFSAFFDDAPIFRIP--G--RRYP--VDIFYTKAP---EADYLDAAIVTVLQIHLTQPLGDIL 477 (902)
T ss_pred CcceEEeeccccCH--HHHHHhccCCcEEecc--C--cccc--eeeecccCC---chhHHHHHHhhheeeEeccCCccEE
Confidence 88899999999877 4555555444544421 1 1111 111211112 233333333322 3467999
Q ss_pred EEecChhhHHHHHHHHHc----------cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEc
Q 011901 349 VFTQTKRDADRLAHAMAK----------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHY 418 (475)
Q Consensus 349 Vf~~~~~~~~~l~~~L~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~ 418 (475)
||....++.+...+.|.+ .+-+.++|+.++.+.+..+++.-..|..+|++||++++..+.|+++..||.-
T Consensus 478 VFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDp 557 (902)
T KOG0923|consen 478 VFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDP 557 (902)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecC
Confidence 999999998888777743 1346688999999999999999999999999999999999999999999975
Q ss_pred CC------------------CCChhHHHHhhhccCCCCCCCeEEEEecch
Q 011901 419 EL------------------PNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (475)
Q Consensus 419 ~~------------------p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~ 450 (475)
++ |-|-+...||.||+||.| +|.|+-+|+.-
T Consensus 558 Gf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 558 GFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred ccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 53 345667789999999996 89999999963
No 110
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=6.9e-23 Score=196.75 Aligned_cols=315 Identities=17% Similarity=0.261 Sum_probs=212.3
Q ss_pred CcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC-CCC
Q 011901 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-PSL 200 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~-~~~ 200 (475)
....+.+.+..|..++-+++.|+||||||... | +.++. .+...+..+-+..|++.-|..+++++.+-. ..+
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQl--~--QyL~e----dGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQL--A--QYLYE----DGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchhhh--H--HHHHh----cccccCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 34566777777888888999999999999733 2 22222 223445678888999999999988876543 222
Q ss_pred ceEE----EEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccc-cccCCchHHHHHHHHhCCC
Q 011901 201 DTIC----VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFAEDVEVILERLPQ 275 (475)
Q Consensus 201 ~~~~----~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~-~~~~~~~~~~~~i~~~~~~ 275 (475)
...+ -+.+.+ .....|-+.|.+.|+....... .+..++.||+||||. .++.+..-.+.+..-.-+.
T Consensus 429 G~~VGYsIRFEdvT--------~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRr 499 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDVT--------SEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRR 499 (1042)
T ss_pred ccccceEEEeeecC--------CCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhc
Confidence 2222 222221 1235788999998876554333 377899999999994 4443332223333333345
Q ss_pred CCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHh------ccCCcEEE
Q 011901 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH------AKGGKCIV 349 (475)
Q Consensus 276 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~------~~~~~~lV 349 (475)
+..+|++|||+.. +.+...|.+.|.+... + ...+..+ . .......+.+...+++. ...+.+||
T Consensus 500 dlKliVtSATm~a--~kf~nfFgn~p~f~Ip-G---RTyPV~~--~---~~k~p~eDYVeaavkq~v~Ihl~~~~GdilI 568 (1042)
T KOG0924|consen 500 DLKLIVTSATMDA--QKFSNFFGNCPQFTIP-G---RTYPVEI--M---YTKTPVEDYVEAAVKQAVQIHLSGPPGDILI 568 (1042)
T ss_pred cceEEEeeccccH--HHHHHHhCCCceeeec-C---CccceEE--E---eccCchHHHHHHHHhhheEeeccCCCCCEEE
Confidence 7889999999876 5666666656655432 1 1111111 1 11112234444444432 23468999
Q ss_pred EecChhhHHHHHHHHHc-----------cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEc
Q 011901 350 FTQTKRDADRLAHAMAK-----------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHY 418 (475)
Q Consensus 350 f~~~~~~~~~l~~~L~~-----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~ 418 (475)
|....+..+-.+..+.. .+.+..+++.++..-+.++++.-..|..+++|||++++..+.||++.+||..
T Consensus 569 fmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~ 648 (1042)
T KOG0924|consen 569 FMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDT 648 (1042)
T ss_pred ecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEec
Confidence 99998887766665543 2457788999999999999988889999999999999999999999999975
Q ss_pred CC------------------CCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccccc
Q 011901 419 EL------------------PNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 419 ~~------------------p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (475)
+. |.|-++..||.|||||.| +|.||-+|+.+ .....++..++++|.
T Consensus 649 Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~-----ay~~eml~stvPEIq 712 (1042)
T KOG0924|consen 649 GYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED-----AYKNEMLPSTVPEIQ 712 (1042)
T ss_pred CceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh-----HHHhhcccCCCchhh
Confidence 53 557777889999999996 89999999985 334455555555543
No 111
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.91 E-value=1.9e-23 Score=206.60 Aligned_cols=296 Identities=22% Similarity=0.246 Sum_probs=195.5
Q ss_pred CCCcHHHHHhhhhHh----cCC-cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHH
Q 011901 120 SKLFPIQKAVLEPAM----QGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~----~~~-~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 194 (475)
..++.+|..||..+. .|+ ..|+++.||+|||.++ +.++..+.+. +...++|+|+.+++|..|.+..+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~------~~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKS------GWVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhc------chhheeeEEechHHHHHHHHHHHH
Confidence 358999999998765 343 4999999999999988 5666666653 234569999999999999999999
Q ss_pred hhCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhC-----CCCCCCccEEEEecccccccCCchHHHHHH
Q 011901 195 ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-----ALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (475)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-----~~~~~~~~~vViDE~H~~~~~~~~~~~~~i 269 (475)
.+.|.-.......+.. ....+.|.++|++.+...+... .+....+++||+|||||- .......+
T Consensus 237 ~~~P~~~~~n~i~~~~-------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~I 305 (875)
T COG4096 237 DFLPFGTKMNKIEDKK-------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSSI 305 (875)
T ss_pred HhCCCccceeeeeccc-------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHHH
Confidence 9988655443332221 1225799999999999887664 234556999999999994 45555677
Q ss_pred HHhCCCCCcEEEEccCCChhHHHHHHhhc-CCCcEE------------------Ee--cCCCccccccCe----------
Q 011901 270 LERLPQNRQSMMFSATMPPWIRSLTNKYL-KNPLTV------------------DL--VGDSDQKLADGI---------- 318 (475)
Q Consensus 270 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~------------------~~--~~~~~~~~~~~~---------- 318 (475)
+..+..- .+++||||......-...++ +.|... .+ .-+.+...+...
T Consensus 306 ~dYFdA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~ 383 (875)
T COG4096 306 LDYFDAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEA 383 (875)
T ss_pred HHHHHHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccc
Confidence 7766432 35559999775444333343 333221 11 000000000000
Q ss_pred ---eEE-EEec------cCccchHHHH----HHHHHhcc---CCcEEEEecChhhHHHHHHHHHccCC------cccccC
Q 011901 319 ---SLY-SIAT------SMYEKPSIIG----QLITEHAK---GGKCIVFTQTKRDADRLAHAMAKSYN------CEPLHG 375 (475)
Q Consensus 319 ---~~~-~~~~------~~~~~~~~l~----~l~~~~~~---~~~~lVf~~~~~~~~~l~~~L~~~~~------~~~~h~ 375 (475)
... +... ........+. ..++.... -+|+||||.+..+|+++...|...++ +..+.|
T Consensus 384 i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~ 463 (875)
T COG4096 384 IDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITG 463 (875)
T ss_pred cCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEec
Confidence 000 0000 0000112222 22332111 35999999999999999999976543 445666
Q ss_pred CCCHHHHHHHHHHHhcC--CCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCC
Q 011901 376 DISQSQRERTLSAFRDG--RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437 (475)
Q Consensus 376 ~~~~~~r~~~~~~f~~g--~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~ 437 (475)
+-. +-...++.|... -..|.|+.+++..|+|+|.|.++|.+..-+|..-|.|++||+-|.
T Consensus 464 d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 464 DAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred cch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 643 334456666553 356888889999999999999999999999999999999999994
No 112
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.91 E-value=8.1e-23 Score=198.97 Aligned_cols=321 Identities=21% Similarity=0.281 Sum_probs=222.5
Q ss_pred CCcHHHHHhhhhHh----cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.+++||.+.++.+. .|-++++...+|-|||+.. ++++..+.... +..+..||+||...|.+ |.++++++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~-----~~~GPfLVi~P~StL~N-W~~Ef~rf 239 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK-----GIPGPFLVIAPKSTLDN-WMNEFKRF 239 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc-----CCCCCeEEEeeHhhHHH-HHHHHHHh
Confidence 58999999999876 4678999999999999755 45554543321 12334799999888755 99999999
Q ss_pred CCCCceEEEEcCcchhHHHH--H-hhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhC
Q 011901 197 APSLDTICVYGGTPISHQMR--A-LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (475)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~ 273 (475)
.|++.+.+.+|+........ . .....+|+|||+++.... ...+.--+++++||||+||+.+. ...+..+++.+
T Consensus 240 ~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f 315 (971)
T KOG0385|consen 240 TPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREF 315 (971)
T ss_pred CCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcch--hhHHHHHHHHh
Confidence 99999999888764333221 1 124699999999987653 11222346789999999999885 35555777777
Q ss_pred CCCCcEEEEccCCChhH-H------------------HHHHhh----------------------------------cCC
Q 011901 274 PQNRQSMMFSATMPPWI-R------------------SLTNKY----------------------------------LKN 300 (475)
Q Consensus 274 ~~~~~~i~~SAT~~~~~-~------------------~~~~~~----------------------------------~~~ 300 (475)
.. ...+++|+||-.+- . .+...+ +..
T Consensus 316 ~~-~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLpp 394 (971)
T KOG0385|consen 316 KT-DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPP 394 (971)
T ss_pred cc-cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCC
Confidence 53 34678899973210 0 000000 000
Q ss_pred CcEEEecCC-----------------------Cc---ccc----------------------ccCeeEEEEeccCccchH
Q 011901 301 PLTVDLVGD-----------------------SD---QKL----------------------ADGISLYSIATSMYEKPS 332 (475)
Q Consensus 301 ~~~~~~~~~-----------------------~~---~~~----------------------~~~~~~~~~~~~~~~~~~ 332 (475)
...+.+... .. .++ ...............|..
T Consensus 395 KkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~ 474 (971)
T KOG0385|consen 395 KKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKML 474 (971)
T ss_pred cceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCccee
Confidence 001100000 00 000 000000111123345667
Q ss_pred HHHHHHHHh-ccCCcEEEEecChhhHHHHHHHHH-ccCCcccccCCCCHHHHHHHHHHHhcC---CCcEEEecCccccCC
Q 011901 333 IIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG---RFNILIATDVAARGL 407 (475)
Q Consensus 333 ~l~~l~~~~-~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~h~~~~~~~r~~~~~~f~~g---~~~vlvaT~~~~~Gi 407 (475)
++..++..+ ..|.+||||..-....+-+..+.. +++...-+.|.++.++|...++.|... ..-.|++|-+.+.||
T Consensus 475 vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGI 554 (971)
T KOG0385|consen 475 VLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGI 554 (971)
T ss_pred hHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccc
Confidence 777777765 468899999999888888877764 568888999999999999999999764 355788999999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCe--EEEEecchhHH
Q 011901 408 DVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS--AILIYTDQQAR 453 (475)
Q Consensus 408 di~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~--~~~~~~~~~~~ 453 (475)
|+..+++||.||..|++..=.|..-||+|.|+... ++-+++....+
T Consensus 555 NL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 555 NLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred ccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 99999999999999999999999999999987544 55667765544
No 113
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.91 E-value=1.3e-22 Score=206.78 Aligned_cols=314 Identities=19% Similarity=0.229 Sum_probs=219.1
Q ss_pred CcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC-CCC
Q 011901 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-PSL 200 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~-~~~ 200 (475)
.+..+++.++.+.+++.+++.|+||||||...---+++...... ....+++-.|+|.-|..+++++..-- ...
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG------AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC------CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 56788999999999999999999999999866656666654422 45668999999999988888876543 222
Q ss_pred ceEEE--EcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccc-cccCCchHHHHHHHHhCCCCC
Q 011901 201 DTICV--YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFAEDVEVILERLPQNR 277 (475)
Q Consensus 201 ~~~~~--~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~-~~~~~~~~~~~~i~~~~~~~~ 277 (475)
...+. .+... .......+++||.+.|++.+..+. .+.++..+|+||+|. -.+.+|.-.+.+.+-..+++.
T Consensus 248 g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~~~-~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~L 320 (924)
T KOG0920|consen 248 GEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQSDP-TLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDL 320 (924)
T ss_pred CCeeeEEEeeec------ccCCceeEEEecHHHHHHHhccCc-ccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCc
Confidence 21111 11111 112236899999999999987743 488999999999994 344445555555555556889
Q ss_pred cEEEEccCCChhHHHHHHhhcCCCcEEEecCCC-cccc-------------ccCeeEE------------EEeccCccch
Q 011901 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS-DQKL-------------ADGISLY------------SIATSMYEKP 331 (475)
Q Consensus 278 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~------------~~~~~~~~~~ 331 (475)
++|+||||+.. ...+.|++....+.+.+.. .... ......+ ..........
T Consensus 321 kvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 397 (924)
T KOG0920|consen 321 KVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDY 397 (924)
T ss_pred eEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccH
Confidence 99999999884 3334444443333332211 0000 0000000 0000111234
Q ss_pred HHHHHHHHHh---ccCCcEEEEecChhhHHHHHHHHHc--------cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEec
Q 011901 332 SIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK--------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400 (475)
Q Consensus 332 ~~l~~l~~~~---~~~~~~lVf~~~~~~~~~l~~~L~~--------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT 400 (475)
.++..+++-. ...+.+|||.|..+++..+.+.|.. .+-+..+|+.|+..+++.+...-..|..+|+++|
T Consensus 398 ~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaT 477 (924)
T KOG0920|consen 398 DLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILAT 477 (924)
T ss_pred HHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhh
Confidence 5555555533 3357999999999999999999853 1446788999999999999999999999999999
Q ss_pred CccccCCCCCCCCEEEEcC--------CC---------C-ChhHHHHhhhccCCCCCCCeEEEEecchhH
Q 011901 401 DVAARGLDVPNVDLIIHYE--------LP---------N-TSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (475)
Q Consensus 401 ~~~~~Gidi~~~~~vi~~~--------~p---------~-~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~ 452 (475)
++++.+|.|+++.+||..+ +- | |-+.-.||+||+||. .+|.||-+|+....
T Consensus 478 NIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 478 NIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRY 546 (924)
T ss_pred hhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhh
Confidence 9999999999999999654 22 2 556678999999998 68999999997543
No 114
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.91 E-value=8.9e-22 Score=202.23 Aligned_cols=138 Identities=23% Similarity=0.418 Sum_probs=121.6
Q ss_pred HHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCC
Q 011901 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (475)
Q Consensus 332 ~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~ 410 (475)
.++..+......+.+++|||++.+.++.+++.|.+ ++++..+||++++.+|..++..|++|++.|+|||+.+++|+|+|
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp 513 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIP 513 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcccc
Confidence 44444444445688999999999999999999975 48889999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCC-----CCChhHHHHhhhccCCCCCCCeEEEEecc---------hhHHHHHHHHHHhCCCccccc
Q 011901 411 NVDLIIHYEL-----PNTSETFVHRTGRTGRAGKKGSAILIYTD---------QQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 411 ~~~~vi~~~~-----p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~ 470 (475)
++++||+++. |.+...|+||+||+||. ..|.|+++++. .+....+.|+..++.....+|
T Consensus 514 ~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred CCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 9999999885 67999999999999996 68999999984 577788889999988877765
No 115
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.90 E-value=9.3e-22 Score=197.70 Aligned_cols=286 Identities=21% Similarity=0.329 Sum_probs=192.8
Q ss_pred HHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHH
Q 011901 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (475)
Q Consensus 109 ~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q 188 (475)
+..+.+.+...++|+..|+--...+..|+++-+.||||.|||.-.++..+... ..|.++++++||..|+.|
T Consensus 70 ~~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a---------~kgkr~yii~PT~~Lv~Q 140 (1187)
T COG1110 70 EFEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA---------KKGKRVYIIVPTTTLVRQ 140 (1187)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH---------hcCCeEEEEecCHHHHHH
Confidence 34556666655689999999999999999999999999999964433333222 236789999999999999
Q ss_pred HHHHHHhhCCCC---ceEEEEcC-cchhHHHH---Hh-hcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccC
Q 011901 189 VEKEFHESAPSL---DTICVYGG-TPISHQMR---AL-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (475)
Q Consensus 189 ~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~---~~-~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~ 260 (475)
+++.+.++.... .+..++.+ .+..++.. .+ +++.||+|+|.+-|.+-+.. +.-.++++|++|++|.++..
T Consensus 141 ~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 141 VYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred HHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhc
Confidence 999999886432 23222333 34333322 22 35699999998887766554 11236899999999986543
Q ss_pred C-----------chHH-------HHHHHHhC------------------------CCCCcEEEEccCCChhHH--HHHHh
Q 011901 261 G-----------FAED-------VEVILERL------------------------PQNRQSMMFSATMPPWIR--SLTNK 296 (475)
Q Consensus 261 ~-----------~~~~-------~~~i~~~~------------------------~~~~~~i~~SAT~~~~~~--~~~~~ 296 (475)
+ |... +..+...+ .+..++++.|||..+.-. .+...
T Consensus 219 skNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfRe 298 (1187)
T COG1110 219 SKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRE 298 (1187)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHH
Confidence 2 2211 11111111 234678999999866431 12222
Q ss_pred hcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecC---hhhHHHHHHHHHc-cCCccc
Q 011901 297 YLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQT---KRDADRLAHAMAK-SYNCEP 372 (475)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~---~~~~~~l~~~L~~-~~~~~~ 372 (475)
.++- . .+. ......++...+... ........+++.... ..|||++. .+.++++++.|.+ ++++..
T Consensus 299 LlgF----e-vG~-~~~~LRNIvD~y~~~---~~~e~~~elvk~lG~--GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~ 367 (1187)
T COG1110 299 LLGF----E-VGS-GGEGLRNIVDIYVES---ESLEKVVELVKKLGD--GGLIFVPIDYGREKAEELAEYLRSHGINAEL 367 (1187)
T ss_pred HhCC----c-cCc-cchhhhheeeeeccC---ccHHHHHHHHHHhCC--CeEEEEEcHHhHHHHHHHHHHHHhcCceEEE
Confidence 2211 1 111 111222222222222 445666677777655 57999999 9999999999976 489999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCcEEEec----CccccCCCCCC-CCEEEEcCCC
Q 011901 373 LHGDISQSQRERTLSAFRDGRFNILIAT----DVAARGLDVPN-VDLIIHYELP 421 (475)
Q Consensus 373 ~h~~~~~~~r~~~~~~f~~g~~~vlvaT----~~~~~Gidi~~-~~~vi~~~~p 421 (475)
+|+. .++.++.|..|++++||.+ .++-+|+|+|. ++.+|+++.|
T Consensus 368 ~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 368 IHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred eecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9974 2677999999999999976 67889999996 8899999887
No 116
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.90 E-value=3.8e-21 Score=204.53 Aligned_cols=331 Identities=18% Similarity=0.205 Sum_probs=200.2
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHhhh----hHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCC
Q 011901 107 SQDIVAALARRGISKLFPIQKAVLE----PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (475)
Q Consensus 107 ~~~l~~~l~~~~~~~l~~~Q~~~i~----~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (475)
++...+.+...|+. +++.|.+.++ .+..++++++.||||+|||++|++|++..+. .+.+++|.+||
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---------~~~~vvi~t~t 301 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---------TEKPVVISTNT 301 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---------CCCeEEEEeCc
Confidence 34666677677764 9999998776 4456788999999999999999999987653 24579999999
Q ss_pred HHHHHHHHHH----HHhhCC-CCceEEEEcCcch---------------h------------------------------
Q 011901 183 RELAKQVEKE----FHESAP-SLDTICVYGGTPI---------------S------------------------------ 212 (475)
Q Consensus 183 ~~La~q~~~~----~~~~~~-~~~~~~~~~~~~~---------------~------------------------------ 212 (475)
++|..|+... +.+.++ ++++.++.|+... .
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~ 381 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGG 381 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCc
Confidence 9999998653 333322 3444444443110 0
Q ss_pred -----HH---------------------HHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCC-----
Q 011901 213 -----HQ---------------------MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----- 261 (475)
Q Consensus 213 -----~~---------------------~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~----- 261 (475)
.+ .+.....++|+|+++..|.+.+.....-+....++||||||++.+..
T Consensus 382 ~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 382 NKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred chhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhc
Confidence 00 00111258999999999987765443334566899999999974210
Q ss_pred --c-----hH----------------------------------------------------------------HHHHHH
Q 011901 262 --F-----AE----------------------------------------------------------------DVEVIL 270 (475)
Q Consensus 262 --~-----~~----------------------------------------------------------------~~~~i~ 270 (475)
+ .. .+...+
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0 00 000000
Q ss_pred Hh---------------------C---------------------------CCCCcEEEEccCCCh--hHHHHHHhhcCC
Q 011901 271 ER---------------------L---------------------------PQNRQSMMFSATMPP--WIRSLTNKYLKN 300 (475)
Q Consensus 271 ~~---------------------~---------------------------~~~~~~i~~SAT~~~--~~~~~~~~~~~~ 300 (475)
.. . +....+|++|||+.. ....+.....-.
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0 112356899999973 223333322212
Q ss_pred C-cEEEecCCCccccccCeeEEEEeccCc-----cchHH---HHHHHHHh--ccCCcEEEEecChhhHHHHHHHHHcc--
Q 011901 301 P-LTVDLVGDSDQKLADGISLYSIATSMY-----EKPSI---IGQLITEH--AKGGKCIVFTQTKRDADRLAHAMAKS-- 367 (475)
Q Consensus 301 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---l~~l~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~-- 367 (475)
. ...... ++.-....+...+ +..+.. ..... +...+.+. ..+++++||+++.+..+.++..|...
T Consensus 622 ~~~~~~~~-~spf~~~~~~~l~-v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~ 699 (850)
T TIGR01407 622 DVHFNTIE-PTPLNYAENQRVL-IPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPE 699 (850)
T ss_pred ccccceec-CCCCCHHHcCEEE-ecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcc
Confidence 1 111111 1111111111111 111110 11111 22222221 24579999999999999999998641
Q ss_pred -CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCC--EEEEcCCCC-Ch-------------------
Q 011901 368 -YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD--LIIHYELPN-TS------------------- 424 (475)
Q Consensus 368 -~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~--~vi~~~~p~-~~------------------- 424 (475)
.....+..+.. ..|..+++.|++|+..||++|+.+.+|||+|+.. .||+...|. ++
T Consensus 700 ~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~ 778 (850)
T TIGR01407 700 FEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNP 778 (850)
T ss_pred ccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 12233333333 5788999999999999999999999999999855 677777664 11
Q ss_pred ----------hHHHHhhhccCCCCCCCeEEEEecch
Q 011901 425 ----------ETFVHRTGRTGRAGKKGSAILIYTDQ 450 (475)
Q Consensus 425 ----------~~~~Q~~GR~gR~~~~g~~~~~~~~~ 450 (475)
..+.|.+||.-|...+.-++++++++
T Consensus 779 f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 779 FYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred hHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 22459999999987665556666553
No 117
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6.2e-23 Score=200.23 Aligned_cols=302 Identities=18% Similarity=0.230 Sum_probs=190.6
Q ss_pred HhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHh-hhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC----CCCce
Q 011901 128 AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK-FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA----PSLDT 202 (475)
Q Consensus 128 ~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~-~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~----~~~~~ 202 (475)
+.+++|..+--++|+|.||||||. .+|- .+++ ........++..+-|.-|+|.-|.-++++...-. .....
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTT--QvPQ--FLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsY 338 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTT--QVPQ--FLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSY 338 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccc--cchH--HHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeE
Confidence 455566666679999999999997 3442 2222 2222222335578899999988777766654332 23333
Q ss_pred EEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhC-------CC
Q 011901 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-------PQ 275 (475)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~-------~~ 275 (475)
.+.+.+.. .....|.++|.+.|++.+.+.- .+..++.||+||||.-.- +.+.+..++.++ .+
T Consensus 339 qIRfd~ti--------~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~LR~k~~k 407 (1172)
T KOG0926|consen 339 QIRFDGTI--------GEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSV--NTDILIGMLSRIVPLRQKYYK 407 (1172)
T ss_pred EEEecccc--------CCCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccc--hHHHHHHHHHHHHHHHHHHhh
Confidence 33343332 2347899999999998887654 388999999999995221 222222222222 11
Q ss_pred ------CCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHH---HHHHHHhccCCc
Q 011901 276 ------NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII---GQLITEHAKGGK 346 (475)
Q Consensus 276 ------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~l~~~~~~~~~ 346 (475)
...+|+||||+.-....-....+..+..+.-+......+..++.. ......-.+.+ +.+-+.+ +.|.
T Consensus 408 e~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~k---rT~~DYi~eAfrKtc~IH~kL-P~G~ 483 (1172)
T KOG0926|consen 408 EQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNK---RTPDDYIAEAFRKTCKIHKKL-PPGG 483 (1172)
T ss_pred hhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEecc---CCCchHHHHHHHHHHHHhhcC-CCCc
Confidence 346799999985432222233333332222222222222222221 11111112222 2222233 5679
Q ss_pred EEEEecChhhHHHHHHHHHccCC---------------------------------------------------------
Q 011901 347 CIVFTQTKRDADRLAHAMAKSYN--------------------------------------------------------- 369 (475)
Q Consensus 347 ~lVf~~~~~~~~~l~~~L~~~~~--------------------------------------------------------- 369 (475)
+|||+....+++.+++.|++.++
T Consensus 484 ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~ 563 (1172)
T KOG0926|consen 484 ILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFAS 563 (1172)
T ss_pred EEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchh
Confidence 99999999999999999976221
Q ss_pred -------------------------------------------cccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccC
Q 011901 370 -------------------------------------------CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406 (475)
Q Consensus 370 -------------------------------------------~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 406 (475)
|..+++-++.+++.++++.-..|..-++|||++++..
T Consensus 564 ~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETS 643 (1172)
T KOG0926|consen 564 LRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETS 643 (1172)
T ss_pred hhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcc
Confidence 2234556677777788877788999999999999999
Q ss_pred CCCCCCCEEEEcCCC--------C----------ChhHHHHhhhccCCCCCCCeEEEEecc
Q 011901 407 LDVPNVDLIIHYELP--------N----------TSETFVHRTGRTGRAGKKGSAILIYTD 449 (475)
Q Consensus 407 idi~~~~~vi~~~~p--------~----------~~~~~~Q~~GR~gR~~~~g~~~~~~~~ 449 (475)
+.||++..||..+.- . |-+.--||.|||||.| +|.||-+|+.
T Consensus 644 LTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 644 LTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred cccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 999999999976532 2 3444569999999996 8999999986
No 118
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.88 E-value=4.7e-21 Score=180.26 Aligned_cols=165 Identities=21% Similarity=0.334 Sum_probs=130.0
Q ss_pred CcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhh
Q 011901 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRD 356 (475)
Q Consensus 277 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~ 356 (475)
.|+|++||||.++-....... .+..+-.+-.-+. +...+.....+-.+++..+.+....+.+++|-+=|++.
T Consensus 387 ~q~i~VSATPg~~E~e~s~~~-----vveQiIRPTGLlD---P~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 387 PQTIYVSATPGDYELEQSGGN-----VVEQIIRPTGLLD---PEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred CCEEEEECCCChHHHHhccCc-----eeEEeecCCCCCC---CceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 689999999988544333211 1111111111111 12233344456677888888888889999999999999
Q ss_pred HHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCC-----CChhHHHHh
Q 011901 357 ADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELP-----NTSETFVHR 430 (475)
Q Consensus 357 ~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p-----~~~~~~~Q~ 430 (475)
++.+.++|.+ ++++..+|++...-+|.+++.+++.|.++|||.-+.+-+|+|+|.|+.|.++|+. +|-.+++|.
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 9999999975 5899999999999999999999999999999999999999999999999999875 488999999
Q ss_pred hhccCCCCCCCeEEEEecch
Q 011901 431 TGRTGRAGKKGSAILIYTDQ 450 (475)
Q Consensus 431 ~GR~gR~~~~g~~~~~~~~~ 450 (475)
+|||.|- -.|.++++.+.-
T Consensus 539 IGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 539 IGRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHHhhc-cCCeEEEEchhh
Confidence 9999997 468999888763
No 119
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=1.1e-21 Score=185.03 Aligned_cols=332 Identities=15% Similarity=0.096 Sum_probs=233.9
Q ss_pred HHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHH
Q 011901 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (475)
Q Consensus 112 ~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (475)
..++.+.-.+...+|.++++.+..|++..+.-.+.+||.+++.+.....+... .....+++.|+.++++...+
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-------~~s~~~~~~~~~~~~~~~~~ 349 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC-------HATNSLLPSEMVEHLRNGSK 349 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC-------cccceecchhHHHHhhccCC
Confidence 34444555678899999999999999999999999999999988877666542 23347999999999887554
Q ss_pred HHHhhC---CCCc--eEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCC----CCCccEEEEecccccccCCc
Q 011901 192 EFHESA---PSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN----LSEVQFVVLDEADQMLSVGF 262 (475)
Q Consensus 192 ~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~----~~~~~~vViDE~H~~~~~~~ 262 (475)
-+.-.. +..+ ++-.+.+.....+......+.+++++.|+++......+... +-...++++||+|.+... +
T Consensus 350 ~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~ 428 (1034)
T KOG4150|consen 350 GQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-T 428 (1034)
T ss_pred ceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-h
Confidence 432211 1112 23345555556666666778999999999988766554332 345668999999988766 5
Q ss_pred hHHHHHHHHhC---------CCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEe----ccCcc
Q 011901 263 AEDVEVILERL---------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA----TSMYE 329 (475)
Q Consensus 263 ~~~~~~i~~~~---------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 329 (475)
+......++++ ..+.|++-.|||....++.+...+.-+.....- ...............+ ....+
T Consensus 429 ~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~--~DGSPs~~K~~V~WNP~~~P~~~~~ 506 (1034)
T KOG4150|consen 429 KALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVT--IDGSPSSEKLFVLWNPSAPPTSKSE 506 (1034)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEE--ecCCCCccceEEEeCCCCCCcchhh
Confidence 55444444433 346789999999998887776665433332221 1111111111111111 11112
Q ss_pred chHHHH----HHHHHhccCCcEEEEecChhhHHHHHHHHHcc---------CCcccccCCCCHHHHHHHHHHHhcCCCcE
Q 011901 330 KPSIIG----QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS---------YNCEPLHGDISQSQRERTLSAFRDGRFNI 396 (475)
Q Consensus 330 ~~~~l~----~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 396 (475)
+...+. -+.+....+-++|.||++++-|+.+....+.- -.+..+.|+...++|+++..++-.|+..-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~g 586 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCG 586 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeE
Confidence 222211 12223346789999999999998776655431 13567899999999999999999999999
Q ss_pred EEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHH
Q 011901 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (475)
Q Consensus 397 lvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~ 453 (475)
+|+|++++.|||+...+.|++.++|.|.+.++|..||+||.++++.++.+.....++
T Consensus 587 iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVD 643 (1034)
T KOG4150|consen 587 IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVD 643 (1034)
T ss_pred EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchh
Confidence 999999999999999999999999999999999999999999999888777655444
No 120
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=5.9e-21 Score=186.94 Aligned_cols=320 Identities=18% Similarity=0.244 Sum_probs=217.9
Q ss_pred CCcHHHHHhhhhHhc----CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 121 KLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~----~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.|.+||++.++.+.+ +...++..++|-|||... +..|..+..... - -..+||+|| ..+..||.++|..|
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k----~-~~paLIVCP-~Tii~qW~~E~~~w 277 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGK----L-TKPALIVCP-ATIIHQWMKEFQTW 277 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhccc----c-cCceEEEcc-HHHHHHHHHHHHHh
Confidence 478999999988763 466899999999999643 445555543211 1 245999999 56778999999999
Q ss_pred CCCCceEEEEcCcchh--------HHHH-----HhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCch
Q 011901 197 APSLDTICVYGGTPIS--------HQMR-----ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (475)
Q Consensus 197 ~~~~~~~~~~~~~~~~--------~~~~-----~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~ 263 (475)
++..++.++++..... .... ....+.+|+++|++.+.-. ...+.-..++++|+||.|++-+..
T Consensus 278 ~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn-- 353 (923)
T KOG0387|consen 278 WPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN-- 353 (923)
T ss_pred CcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc--
Confidence 9999999988766521 1111 1123468999999876532 122334468899999999998863
Q ss_pred HHHHHHHHhCCCCCcEEEEccCCChhH-HHHHHhh---------------------------------------------
Q 011901 264 EDVEVILERLPQNRQSMMFSATMPPWI-RSLTNKY--------------------------------------------- 297 (475)
Q Consensus 264 ~~~~~i~~~~~~~~~~i~~SAT~~~~~-~~~~~~~--------------------------------------------- 297 (475)
..+...++.++ ..+.+++|+||..+- ..+.+.+
T Consensus 354 s~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~L 432 (923)
T KOG0387|consen 354 SKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVAL 432 (923)
T ss_pred cHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHH
Confidence 44444455553 566788999985321 1111110
Q ss_pred --------------------cCCCcEEEecCC------------------------Cc---------ccccc--------
Q 011901 298 --------------------LKNPLTVDLVGD------------------------SD---------QKLAD-------- 316 (475)
Q Consensus 298 --------------------~~~~~~~~~~~~------------------------~~---------~~~~~-------- 316 (475)
+.....+.+... .. ..+.+
T Consensus 433 r~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~ 512 (923)
T KOG0387|consen 433 RDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRR 512 (923)
T ss_pred HHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCc
Confidence 000000000000 00 00000
Q ss_pred -----CeeEEEEeccCccchHHHHHHHHHh-ccCCcEEEEecChhhHHHHHHHHH--ccCCcccccCCCCHHHHHHHHHH
Q 011901 317 -----GISLYSIATSMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMA--KSYNCEPLHGDISQSQRERTLSA 388 (475)
Q Consensus 317 -----~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lVf~~~~~~~~~l~~~L~--~~~~~~~~h~~~~~~~r~~~~~~ 388 (475)
....+.-......|...+..++..+ ..|.++++|..++...+.+...|. +++.+..+.|..+...|...++.
T Consensus 513 ~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~ 592 (923)
T KOG0387|consen 513 DEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDR 592 (923)
T ss_pred ccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHh
Confidence 0000001122234667777777764 457899999999999999999998 47999999999999999999999
Q ss_pred HhcCCC--cEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCe--EEEEecchhH
Q 011901 389 FRDGRF--NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS--AILIYTDQQA 452 (475)
Q Consensus 389 f~~g~~--~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~--~~~~~~~~~~ 452 (475)
|.++.. -.|++|.+.+-|+|+..++-||+||+.|+++.=.|..-|+-|.|++-. +|-+++....
T Consensus 593 Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 593 FNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTI 660 (923)
T ss_pred hcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcH
Confidence 998753 356677899999999999999999999999999999999999997654 4456665443
No 121
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=2.2e-20 Score=185.47 Aligned_cols=315 Identities=17% Similarity=0.179 Sum_probs=207.6
Q ss_pred cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.|. .+++.|.-+.-.++.| -+..+.||+|||+++.+|++..... |..+.+++|+..||.|.++++..+
T Consensus 75 lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~---------G~~VhvvT~NdyLA~RDae~m~~l 142 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ---------GRRVHVITVNDYLARRDAEWMGPL 142 (764)
T ss_pred cCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc---------CCCeEEEcCCHHHHHHHHHHHHHH
Confidence 354 4888888888777765 5779999999999999998877655 788999999999999999999988
Q ss_pred CC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHH-HHHHhC------CCCCCCccEEEEecccccccCC------
Q 011901 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI-DLIKRN------ALNLSEVQFVVLDEADQMLSVG------ 261 (475)
Q Consensus 197 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~-~~l~~~------~~~~~~~~~vViDE~H~~~~~~------ 261 (475)
+. ++++.++.++.+...+... ..+||+.+|...|- +++..+ ......+.+.||||+|.++=..
T Consensus 143 y~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLi 220 (764)
T PRK12326 143 YEALGLTVGWITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLV 220 (764)
T ss_pred HHhcCCEEEEECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCcee
Confidence 76 4566667676665544433 45899999998763 333222 1224568899999999754110
Q ss_pred ---------chHHHHHHHHhCCC---------------------------------------------------------
Q 011901 262 ---------FAEDVEVILERLPQ--------------------------------------------------------- 275 (475)
Q Consensus 262 ---------~~~~~~~i~~~~~~--------------------------------------------------------- 275 (475)
....+..+...+.+
T Consensus 221 ISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~ 300 (764)
T PRK12326 221 LAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQR 300 (764)
T ss_pred eeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhc
Confidence 01111111111110
Q ss_pred -------------------------------------------------------------CCcEEEEccCCChhHHHHH
Q 011901 276 -------------------------------------------------------------NRQSMMFSATMPPWIRSLT 294 (475)
Q Consensus 276 -------------------------------------------------------------~~~~i~~SAT~~~~~~~~~ 294 (475)
-..+.+||+|.......+.
T Consensus 301 d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~ 380 (764)
T PRK12326 301 DVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLR 380 (764)
T ss_pred CCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHH
Confidence 0234566666655555544
Q ss_pred HhhcCCCcEEEecCCCccccccCeeEEEEeccCccchH-HHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCccc
Q 011901 295 NKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS-IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEP 372 (475)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~ 372 (475)
..|--+ .+. +...............+ ....+|.. ++..+.+.+..|.++||.|.+++.++.++..|.+ ++++..
T Consensus 381 ~iY~l~--Vv~-IPtnkp~~R~d~~d~iy-~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~v 456 (764)
T PRK12326 381 QFYDLG--VSV-IPPNKPNIREDEADRVY-ATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVV 456 (764)
T ss_pred HHhCCc--EEE-CCCCCCceeecCCCceE-eCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCccee
Confidence 444322 111 11111111111111111 22223333 3444455567899999999999999999999975 478888
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCC---------------CEEEEcCCCCChhHHHHhhhccCCC
Q 011901 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV---------------DLIIHYELPNTSETFVHRTGRTGRA 437 (475)
Q Consensus 373 ~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~---------------~~vi~~~~p~~~~~~~Q~~GR~gR~ 437 (475)
++.+....|-+.+-+.-+. -.|.|||++++||.||.-- =+||--..+.|.---.|.+||+||.
T Consensus 457 LNAk~~~~EA~IIa~AG~~--gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQ 534 (764)
T PRK12326 457 LNAKNDAEEARIIAEAGKY--GAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQ 534 (764)
T ss_pred eccCchHhHHHHHHhcCCC--CcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccC
Confidence 8877554443333332223 3589999999999999732 2788888888988899999999999
Q ss_pred CCCCeEEEEecchh
Q 011901 438 GKKGSAILIYTDQQ 451 (475)
Q Consensus 438 ~~~g~~~~~~~~~~ 451 (475)
|.+|.+-.|.+-+|
T Consensus 535 GDpGss~f~lSleD 548 (764)
T PRK12326 535 GDPGSSVFFVSLED 548 (764)
T ss_pred CCCCceeEEEEcch
Confidence 99999888887543
No 122
>COG4889 Predicted helicase [General function prediction only]
Probab=99.87 E-value=3.5e-22 Score=196.59 Aligned_cols=334 Identities=20% Similarity=0.277 Sum_probs=204.0
Q ss_pred CCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcC----CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCC
Q 011901 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~----~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 173 (475)
..+|+.+.. .++...+.-+...+|+|||+.|++...++ ...-+.+.+|+|||++.+ -+...+. .
T Consensus 139 ~IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala----------~ 206 (1518)
T COG4889 139 PIDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALA----------A 206 (1518)
T ss_pred CCChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHh----------h
Confidence 344444432 45566666677789999999999998876 236678899999999885 3334442 2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHhhCC-CCceEEEEcCcchhHH-----------------------H--HHhhcCCcEEEE
Q 011901 174 PLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQ-----------------------M--RALDYGVDAVVG 227 (475)
Q Consensus 174 ~~~lil~Pt~~La~q~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------------------~--~~~~~~~~Ilv~ 227 (475)
.++|+++|+..|..|..+++..... ++....++++...+.- . .....+--|+++
T Consensus 207 ~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFs 286 (1518)
T COG4889 207 ARILFLVPSISLLSQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFS 286 (1518)
T ss_pred hheEeecchHHHHHHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEE
Confidence 4599999999999999888765432 3444444443222111 1 112245679999
Q ss_pred ccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCC-----CCCcEEEEccCCChhHHHHHHhhc----
Q 011901 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-----QNRQSMMFSATMPPWIRSLTNKYL---- 298 (475)
Q Consensus 228 T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~-----~~~~~i~~SAT~~~~~~~~~~~~~---- 298 (475)
|++.+...-......+..+++||.|||||..+......-...+.+.. +....+.|||||.-.........-
T Consensus 287 TYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~ 366 (1518)
T COG4889 287 TYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSA 366 (1518)
T ss_pred cccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccc
Confidence 99999877766667788999999999999754422211111111111 123468999998432222111111
Q ss_pred -----------------------------CCCcEEEecCCCccccccCeeEEEEe-ccCccchHHH-------HHHHHHh
Q 011901 299 -----------------------------KNPLTVDLVGDSDQKLADGISLYSIA-TSMYEKPSII-------GQLITEH 341 (475)
Q Consensus 299 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l-------~~l~~~~ 341 (475)
.+...+.+..+ ........+.... ....-..+-. ..+.++.
T Consensus 367 ~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd--~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~ 444 (1518)
T COG4889 367 ELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVD--KEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRN 444 (1518)
T ss_pred eeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEec--hhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhc
Confidence 11111111000 0000000000000 0000001111 1122211
Q ss_pred cc-------------CCcEEEEecChhhHHHHHHHHHc----------------cCCcccccCCCCHHHHHHHHHH---H
Q 011901 342 AK-------------GGKCIVFTQTKRDADRLAHAMAK----------------SYNCEPLHGDISQSQRERTLSA---F 389 (475)
Q Consensus 342 ~~-------------~~~~lVf~~~~~~~~~l~~~L~~----------------~~~~~~~h~~~~~~~r~~~~~~---f 389 (475)
.. -.+++-||.+++....+++.+.+ .+.+..+.|.|+..+|.+.+.. |
T Consensus 445 g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~ 524 (1518)
T COG4889 445 GEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTF 524 (1518)
T ss_pred cccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCC
Confidence 10 13788999999888777665532 1346678999999999554432 3
Q ss_pred hcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCC--C-CCCeEEE
Q 011901 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA--G-KKGSAIL 445 (475)
Q Consensus 390 ~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~--~-~~g~~~~ 445 (475)
..++++||--..++++|+|+|..+.||++++-.+..+.+|.+||+.|. | +-|+.++
T Consensus 525 ~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 525 EPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred CcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 557889998889999999999999999999999999999999999994 2 2355554
No 123
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=1.8e-20 Score=190.60 Aligned_cols=311 Identities=20% Similarity=0.214 Sum_probs=197.9
Q ss_pred CCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC--
Q 011901 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~-- 198 (475)
.+++.|. +-.+.-.+..+..+.||+|||+++.+|++..... |..+.+++|+..||.|.++++..++.
T Consensus 82 ~~ydVQl--iGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~---------G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 82 RHFDVQL--IGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS---------GKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred CcchhHH--HhhhHhccCccccccCCCCChHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 3566664 4444434568899999999999999999876654 88899999999999999999999886
Q ss_pred CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHH-HHHHHhCC------CCCCCccEEEEecccccccCC----------
Q 011901 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQMLSVG---------- 261 (475)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~~~~~vViDE~H~~~~~~---------- 261 (475)
++++.++.++.+...+.... .++|++||+..| ++++..+. .....+.++||||+|.++=..
T Consensus 151 Gl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~ 228 (913)
T PRK13103 151 GLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQ 228 (913)
T ss_pred CCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCC
Confidence 56667777766655544433 389999999887 33333321 123789999999999864110
Q ss_pred ------chHHHHHHHHhCCC--------------------C---------------------------------------
Q 011901 262 ------FAEDVEVILERLPQ--------------------N--------------------------------------- 276 (475)
Q Consensus 262 ------~~~~~~~i~~~~~~--------------------~--------------------------------------- 276 (475)
....+..+...+.. .
T Consensus 229 ~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~ 308 (913)
T PRK13103 229 AEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLT 308 (913)
T ss_pred CccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHH
Confidence 01111111111100 0
Q ss_pred ----------------------------------------------------------------------------CcEE
Q 011901 277 ----------------------------------------------------------------------------RQSM 280 (475)
Q Consensus 277 ----------------------------------------------------------------------------~~~i 280 (475)
..+-
T Consensus 309 ~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLs 388 (913)
T PRK13103 309 HVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLS 388 (913)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhc
Confidence 1223
Q ss_pred EEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchH-HHHHHHHHhccCCcEEEEecChhhHHH
Q 011901 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS-IIGQLITEHAKGGKCIVFTQTKRDADR 359 (475)
Q Consensus 281 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~~~~lVf~~~~~~~~~ 359 (475)
+||+|.......+...|.-+-..+ .............. +..+..+|.. ++..+...+..|.++||-|.+++.++.
T Consensus 389 GMTGTa~te~~Ef~~iY~l~Vv~I---PTnkP~~R~D~~d~-vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ 464 (913)
T PRK13103 389 GMTGTADTEAFEFRQIYGLDVVVI---PPNKPLARKDFNDL-VYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEH 464 (913)
T ss_pred cCCCCCHHHHHHHHHHhCCCEEEC---CCCCCcccccCCCe-EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHH
Confidence 444444333333333332111111 11110000111111 1122233443 334444556779999999999999999
Q ss_pred HHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcC-CCcEEEecCccccCCCCC---------------------------
Q 011901 360 LAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDG-RFNILIATDVAARGLDVP--------------------------- 410 (475)
Q Consensus 360 l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlvaT~~~~~Gidi~--------------------------- 410 (475)
++..|.+ +++..+++.+....|-+-+- ..| .-.|.|||++++||.||.
T Consensus 465 ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~ 541 (913)
T PRK13103 465 MSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADW 541 (913)
T ss_pred HHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999975 47777777765544433333 344 345999999999999995
Q ss_pred ----------CCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchh
Q 011901 411 ----------NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (475)
Q Consensus 411 ----------~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~ 451 (475)
+-=+||--..+.|.--=.|.+||+||-|.+|.+-.|.+-+|
T Consensus 542 ~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 542 QKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 12267777788888888999999999999999888887644
No 124
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=1.1e-20 Score=175.50 Aligned_cols=328 Identities=17% Similarity=0.241 Sum_probs=206.5
Q ss_pred CCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEE
Q 011901 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~l 177 (475)
...|...+.++...+.++++.-...+..+.+-+..+..++-+++.|+||||||...--.++...... ...+.
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--------~~~v~ 95 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--------LTGVA 95 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--------cccee
Confidence 3346678899999999988765556777788888888889999999999999974322233332221 24588
Q ss_pred EEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccc-
Q 011901 178 VLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ- 256 (475)
Q Consensus 178 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~- 256 (475)
...|++.-|.+++.+..+-- ++...--.|..-.-+ .....+.-.-.+|.++|++..-.... +..++++|+||+|.
T Consensus 96 CTQprrvaamsva~RVadEM-Dv~lG~EVGysIrfE--dC~~~~T~Lky~tDgmLlrEams~p~-l~~y~viiLDeahER 171 (699)
T KOG0925|consen 96 CTQPRRVAAMSVAQRVADEM-DVTLGEEVGYSIRFE--DCTSPNTLLKYCTDGMLLREAMSDPL-LGRYGVIILDEAHER 171 (699)
T ss_pred ecCchHHHHHHHHHHHHHHh-ccccchhcccccccc--ccCChhHHHHHhcchHHHHHHhhCcc-cccccEEEechhhhh
Confidence 89999999999888776532 111111111110000 00000011224677777665544443 78899999999995
Q ss_pred cccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchH-HHH
Q 011901 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS-IIG 335 (475)
Q Consensus 257 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 335 (475)
.+..+....+.+-...-+++..+|+||||+.. .. .+.|+++.-.+.+.+.. .+..++......+..+ .+.
T Consensus 172 tlATDiLmGllk~v~~~rpdLk~vvmSatl~a--~K-fq~yf~n~Pll~vpg~~------PvEi~Yt~e~erDylEaair 242 (699)
T KOG0925|consen 172 TLATDILMGLLKEVVRNRPDLKLVVMSATLDA--EK-FQRYFGNAPLLAVPGTH------PVEIFYTPEPERDYLEAAIR 242 (699)
T ss_pred hHHHHHHHHHHHHHHhhCCCceEEEeecccch--HH-HHHHhCCCCeeecCCCC------ceEEEecCCCChhHHHHHHH
Confidence 22211222222222223468899999999765 33 44455555555443211 1222322222222222 222
Q ss_pred HHHHHh--ccCCcEEEEecChhhHHHHHHHHHc----------cCCcccccCCCCHHHHHHHHHHHhc---C--CCcEEE
Q 011901 336 QLITEH--AKGGKCIVFTQTKRDADRLAHAMAK----------SYNCEPLHGDISQSQRERTLSAFRD---G--RFNILI 398 (475)
Q Consensus 336 ~l~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~----------~~~~~~~h~~~~~~~r~~~~~~f~~---g--~~~vlv 398 (475)
..++-+ ...|-++||....++.+..++.+.+ ..++..+| +.++.++++.... | ..+|+|
T Consensus 243 tV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVv 318 (699)
T KOG0925|consen 243 TVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVV 318 (699)
T ss_pred HHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEE
Confidence 223322 2357899999999999999888863 14566777 4455555544321 2 358999
Q ss_pred ecCccccCCCCCCCCEEEEcCC------------------CCChhHHHHhhhccCCCCCCCeEEEEecchh
Q 011901 399 ATDVAARGLDVPNVDLIIHYEL------------------PNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (475)
Q Consensus 399 aT~~~~~Gidi~~~~~vi~~~~------------------p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~ 451 (475)
+|++++..+.++++.+||..+. |.|-++..||.||+||. ++|+|+.+|+++-
T Consensus 319 stniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~ 388 (699)
T KOG0925|consen 319 STNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA 388 (699)
T ss_pred EecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHh
Confidence 9999999999999999997653 56788899999999998 6999999999753
No 125
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.86 E-value=9.9e-21 Score=193.06 Aligned_cols=321 Identities=18% Similarity=0.263 Sum_probs=220.3
Q ss_pred CCCcHHHHHhhhhHh----cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHh
Q 011901 120 SKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 195 (475)
.+|+.+|-+.++.++ .+.++|+....|-|||+.- +..|..+...... .+..|+++|...+.. |.++|..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~~-----~gpflvvvplst~~~-W~~ef~~ 441 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQI-----HGPFLVVVPLSTITA-WEREFET 441 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhhc-----cCCeEEEeehhhhHH-HHHHHHH
Confidence 689999999999876 5689999999999999543 5555555543322 233899999877765 9999999
Q ss_pred hCCCCceEEEEcCcchhHHHHHhh----c-----CCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHH
Q 011901 196 SAPSLDTICVYGGTPISHQMRALD----Y-----GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266 (475)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~ 266 (475)
|. .+++++.+|.......++... . ..+++++|++.++..-.. +.--.+.++++||||++.+. ...+
T Consensus 442 w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~--L~~i~w~~~~vDeahrLkN~--~~~l 516 (1373)
T KOG0384|consen 442 WT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE--LSKIPWRYLLVDEAHRLKND--ESKL 516 (1373)
T ss_pred Hh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh--hccCCcceeeecHHhhcCch--HHHH
Confidence 98 889888888877665544432 2 379999999988643221 12234678999999999874 3444
Q ss_pred HHHHHhCCCCCcEEEEccCCCh-hHHHHHHhh--cC--------------------------------------------
Q 011901 267 EVILERLPQNRQSMMFSATMPP-WIRSLTNKY--LK-------------------------------------------- 299 (475)
Q Consensus 267 ~~i~~~~~~~~~~i~~SAT~~~-~~~~~~~~~--~~-------------------------------------------- 299 (475)
...+..+. ..+.+++|+||-. .+..+.... +.
T Consensus 517 ~~~l~~f~-~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveks 595 (1373)
T KOG0384|consen 517 YESLNQFK-MNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKS 595 (1373)
T ss_pred HHHHHHhc-ccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccC
Confidence 44566664 3456788999742 222222110 00
Q ss_pred ---CCcEEEecC-------------------------------------------------CCccccccCeeE------E
Q 011901 300 ---NPLTVDLVG-------------------------------------------------DSDQKLADGISL------Y 321 (475)
Q Consensus 300 ---~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~------~ 321 (475)
....|.-+. ..+..+...+.. .
T Consensus 596 lp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L 675 (1373)
T KOG0384|consen 596 LPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEAL 675 (1373)
T ss_pred CCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHH
Confidence 000000000 000000000000 0
Q ss_pred EEeccCccchHHHHHHHHHhc-cCCcEEEEecChhhHHHHHHHHH-ccCCcccccCCCCHHHHHHHHHHHhc---CCCcE
Q 011901 322 SIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRD---GRFNI 396 (475)
Q Consensus 322 ~~~~~~~~~~~~l~~l~~~~~-~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~h~~~~~~~r~~~~~~f~~---g~~~v 396 (475)
........|.-++..++..+. .|++||||..-+...+-|+++|. ++++..-+.|....+.|+..++.|.+ ..+..
T Consensus 676 ~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvF 755 (1373)
T KOG0384|consen 676 QALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVF 755 (1373)
T ss_pred HHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEE
Confidence 000011123333444444443 36899999999999999999996 56999999999999999999999975 46789
Q ss_pred EEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCe--EEEEecchhHH
Q 011901 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS--AILIYTDQQAR 453 (475)
Q Consensus 397 lvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~--~~~~~~~~~~~ 453 (475)
|+||-+.+.|||+..++.||++|..|++..=+|...||+|.|++.. +|-+++.+.++
T Consensus 756 LLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvE 814 (1373)
T KOG0384|consen 756 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVE 814 (1373)
T ss_pred EEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchH
Confidence 9999999999999999999999999999999999999999998654 66777775543
No 126
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.86 E-value=4e-20 Score=164.16 Aligned_cols=182 Identities=42% Similarity=0.673 Sum_probs=147.6
Q ss_pred cCCCCCcHHHHHhhhhHhcC-CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHh
Q 011901 117 RGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 195 (475)
.++..++++|.++++.+... +++++.++||||||.++..+++..+... ....+++++|+..++.|+.+.+..
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~-------~~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG-------KGKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc-------CCCcEEEEeCCHHHHHHHHHHHHH
Confidence 46678999999999999988 9999999999999999988888877441 135699999999999999999998
Q ss_pred hCCCC--ceEEEEcCcchhHHHHHhhcCC-cEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHh
Q 011901 196 SAPSL--DTICVYGGTPISHQMRALDYGV-DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272 (475)
Q Consensus 196 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~ 272 (475)
.++.. ......++............+. +++++|++.+.+.+.........++++|+||+|.+....+...+..++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 156 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL 156 (201)
T ss_pred HhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh
Confidence 87542 2333444444344444444444 99999999999998887666778999999999998875588888889888
Q ss_pred CCCCCcEEEEccCCChhHHHHHHhhcCCCcEEE
Q 011901 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (475)
Q Consensus 273 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 305 (475)
+++..+++++|||++.........+......+.
T Consensus 157 ~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~ 189 (201)
T smart00487 157 LPKNVQLLLLSATPPEEIENLLELFLNDPVFID 189 (201)
T ss_pred CCccceEEEEecCCchhHHHHHHHhcCCCEEEe
Confidence 888899999999999988888888877555554
No 127
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=2.4e-20 Score=190.27 Aligned_cols=123 Identities=24% Similarity=0.310 Sum_probs=105.3
Q ss_pred ccchHHHHHHHHH-hccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCcccc
Q 011901 328 YEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405 (475)
Q Consensus 328 ~~~~~~l~~l~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 405 (475)
.+|...+...+.+ +..+.++||||++++.++.++..|.+ ++++..+|+ .+.+|+..+..|..+...|+|||++++|
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 3455555555543 45688999999999999999999974 588999997 4789999999999999999999999999
Q ss_pred CCCCC---CCC-----EEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhH
Q 011901 406 GLDVP---NVD-----LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (475)
Q Consensus 406 Gidi~---~~~-----~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~ 452 (475)
|+||+ .|. +||....|.+...|.|++||+||.|.+|.+.+|++.+|.
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999 443 348888888999999999999999999999999997653
No 128
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.86 E-value=9.3e-20 Score=181.78 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=116.1
Q ss_pred CCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC--
Q 011901 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~-- 198 (475)
.|-.||.+.+..+-.+...++.+||.+|||++...++=..+ +. ....-+++++|+++|.+|+..++...+.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVL-Re------sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~ 583 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVL-RE------SDSDVVIYVAPTKALVNQVSANVYARFDTK 583 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHH-hh------cCCCEEEEecchHHHhhhhhHHHHHhhccC
Confidence 57889999999999999999999999999987655544443 32 3355699999999999999888876652
Q ss_pred C-CceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHh---CCCCCCCccEEEEecccccccCCchHHHHHHHHhCC
Q 011901 199 S-LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR---NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (475)
Q Consensus 199 ~-~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~---~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~ 274 (475)
. ...+.+.|..+...... .-.|.|+|+-|+.+..++.. ......+++++|+||+|.+.+..-+-.++.++...
T Consensus 584 t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li- 660 (1330)
T KOG0949|consen 584 TFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI- 660 (1330)
T ss_pred ccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc-
Confidence 1 11222334333222221 23589999999999998877 33457889999999999987765555555665555
Q ss_pred CCCcEEEEccCCChh
Q 011901 275 QNRQSMMFSATMPPW 289 (475)
Q Consensus 275 ~~~~~i~~SAT~~~~ 289 (475)
.+.++++|||..+.
T Consensus 661 -~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 661 -PCPFLVLSATIGNP 674 (1330)
T ss_pred -CCCeeEEecccCCH
Confidence 47799999998653
No 129
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=2e-20 Score=174.26 Aligned_cols=312 Identities=21% Similarity=0.225 Sum_probs=205.3
Q ss_pred CCCcHHHHHhhhhHhcC---CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 120 SKLFPIQKAVLEPAMQG---RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~---~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
..++|+|++++..+..+ +..+|..|+|+|||++.+-+++. + ...+|++|.+...++||..+|+.|
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-i-----------kK~clvLcts~VSVeQWkqQfk~w 368 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-I-----------KKSCLVLCTSAVSVEQWKQQFKQW 368 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-e-----------cccEEEEecCccCHHHHHHHHHhh
Confidence 56899999999988754 56899999999999987555442 2 455999999999999999999998
Q ss_pred CC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhC--------CCCCCCccEEEEecccccccCCchHHH
Q 011901 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN--------ALNLSEVQFVVLDEADQMLSVGFAEDV 266 (475)
Q Consensus 197 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~--------~~~~~~~~~vViDE~H~~~~~~~~~~~ 266 (475)
.. +-.+...+...+ .....++.|+|+|+.++...-++. .+.-..++++++||+|.+-.. -+
T Consensus 369 sti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~----MF 439 (776)
T KOG1123|consen 369 STIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK----MF 439 (776)
T ss_pred cccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH----HH
Confidence 63 222333333322 123567899999998875321111 122456889999999986433 23
Q ss_pred HHHHHhCCCCCcEEEEccCCChhHHHHHH-hhcCCC-------------------cEEEecCCCcccc-----ccCe-eE
Q 011901 267 EVILERLPQNRQSMMFSATMPPWIRSLTN-KYLKNP-------------------LTVDLVGDSDQKL-----ADGI-SL 320 (475)
Q Consensus 267 ~~i~~~~~~~~~~i~~SAT~~~~~~~~~~-~~~~~~-------------------~~~~~~~~~~~~~-----~~~~-~~ 320 (475)
++++.....++ .+++|||+-.+...... +|+-.| ....++....... .... ..
T Consensus 440 RRVlsiv~aHc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 440 RRVLSIVQAHC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred HHHHHHHHHHh-hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 34444443333 58999997432211111 011111 1111111110000 0000 01
Q ss_pred EEEeccCccchHHHHHHHHHhc-cCCcEEEEecChhhHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHhcC-CCcEEE
Q 011901 321 YSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG-RFNILI 398 (475)
Q Consensus 321 ~~~~~~~~~~~~~l~~l~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlv 398 (475)
.....-...|......+++-+. .|.++|||..+.-.....+-.|.+ ..++|..++.+|.++++.|+-+ .++-++
T Consensus 519 ~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 519 MLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK----PFIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred heeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC----ceEECCCchhHHHHHHHhcccCCccceEE
Confidence 1111222345666667776543 578999999999988888887755 4678999999999999999865 678888
Q ss_pred ecCccccCCCCCCCCEEEEcCCCC-ChhHHHHhhhccCCCCC---C---CeEEEEecchhHHHHHH
Q 011901 399 ATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGK---K---GSAILIYTDQQARQVKS 457 (475)
Q Consensus 399 aT~~~~~Gidi~~~~~vi~~~~p~-~~~~~~Q~~GR~gR~~~---~---g~~~~~~~~~~~~~~~~ 457 (475)
-+.+....+|+|.++++|+.+... |..+-.||.||.-|+.+ . ...+.+.+.+..+....
T Consensus 595 lSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YS 660 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYS 660 (776)
T ss_pred EeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhh
Confidence 889999999999999999998877 77888999999998532 2 33455556665554443
No 130
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.83 E-value=2.7e-18 Score=172.51 Aligned_cols=316 Identities=18% Similarity=0.214 Sum_probs=192.5
Q ss_pred CCcHHHHHhhhhHhcC----------CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHH
Q 011901 121 KLFPIQKAVLEPAMQG----------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~----------~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (475)
.++|||++.+.-+... ..+++...+|+|||+.. ++.+..+++......+ .-.+.||++| ..|...|+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~P~~~~-~~~k~lVV~P-~sLv~nWk 314 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQFPQAKP-LINKPLVVAP-SSLVNNWK 314 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhCcCccc-cccccEEEcc-HHHHHHHH
Confidence 5899999999876532 23788999999999866 4555555442111000 1256899999 78889999
Q ss_pred HHHHhhCC--CCceEEEEcCcch-hHHHH------HhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCC
Q 011901 191 KEFHESAP--SLDTICVYGGTPI-SHQMR------ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261 (475)
Q Consensus 191 ~~~~~~~~--~~~~~~~~~~~~~-~~~~~------~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~ 261 (475)
++|.+|.. .+....+++.... ..... ......-|++.+++.+.+.+.. +....++++|+||.|+..+.
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~- 391 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS- 391 (776)
T ss_pred HHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch-
Confidence 99999976 3445555665553 11111 1112357888899988766654 33668999999999998774
Q ss_pred chHHHHHHHHhCCCCCcEEEEccCCChh----------------------------------------------------
Q 011901 262 FAEDVEVILERLPQNRQSMMFSATMPPW---------------------------------------------------- 289 (475)
Q Consensus 262 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~---------------------------------------------------- 289 (475)
...+...+..+. -.+.|++|+||..+
T Consensus 392 -~s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 392 -DSLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred -hhHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 344555566664 44578889997321
Q ss_pred HHHHHHhhcC------------CCcEEEecCC-Cc----------cc----------c---------cc-----------
Q 011901 290 IRSLTNKYLK------------NPLTVDLVGD-SD----------QK----------L---------AD----------- 316 (475)
Q Consensus 290 ~~~~~~~~~~------------~~~~~~~~~~-~~----------~~----------~---------~~----------- 316 (475)
+..+...++. ....+.+.-. .. .. . ..
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 0111111110 0000000000 00 00 0 00
Q ss_pred ----------------CeeEEEEeccCccchHHHHHHHHHhccCCcEEEEe---cChhhHHHHHHHHH--ccCCcccccC
Q 011901 317 ----------------GISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFT---QTKRDADRLAHAMA--KSYNCEPLHG 375 (475)
Q Consensus 317 ----------------~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~---~~~~~~~~l~~~L~--~~~~~~~~h~ 375 (475)
.............+...+..++... ..++++|+ ....+...+.+.+. +++.+..+||
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~--~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG 627 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI--REKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDG 627 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHH--hhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcC
Confidence 0000000000011223333333211 22333333 33333344444442 3678889999
Q ss_pred CCCHHHHHHHHHHHhcCC--Cc-EEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEE
Q 011901 376 DISQSQRERTLSAFRDGR--FN-ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446 (475)
Q Consensus 376 ~~~~~~r~~~~~~f~~g~--~~-vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~ 446 (475)
+|+..+|+.+++.|.+.. .. .|.+|.+.+.|+++-+++.||++|++||++.-.|.++||-|.|++-.|+++
T Consensus 628 ~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 628 KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999998743 23 455667889999999999999999999999999999999999987766653
No 131
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.82 E-value=4.6e-18 Score=178.54 Aligned_cols=119 Identities=17% Similarity=0.153 Sum_probs=82.4
Q ss_pred ccCCcEEEEecChhhHHHHHHHHHcc-CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCC--CCEEEEc
Q 011901 342 AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN--VDLIIHY 418 (475)
Q Consensus 342 ~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~--~~~vi~~ 418 (475)
..+++++|+++|.+..+.+++.|... ..+ ...|... .+.++++.|++++..||++|+...+|||+|+ ...||+.
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 35689999999999999999888643 222 4444322 2456899999988899999999999999974 5667777
Q ss_pred CCCC-Ch-----------------------------hHHHHhhhccCCCCCCCeEEEEecch--hHHHHHHHHHHhC
Q 011901 419 ELPN-TS-----------------------------ETFVHRTGRTGRAGKKGSAILIYTDQ--QARQVKSIERDVG 463 (475)
Q Consensus 419 ~~p~-~~-----------------------------~~~~Q~~GR~gR~~~~g~~~~~~~~~--~~~~~~~i~~~~~ 463 (475)
..|. ++ ..+.|-+||.-|...+--++++++++ ...+-+.+.+.+.
T Consensus 722 kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 722 RLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASLA 798 (820)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhCC
Confidence 7663 12 11459999999986544455555553 2233344544444
No 132
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.81 E-value=2.6e-18 Score=175.03 Aligned_cols=326 Identities=18% Similarity=0.209 Sum_probs=219.2
Q ss_pred CCcHHHHHhhhhHhc----CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 121 KLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~----~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.|+.||++.++++.- +-+.+++.++|-|||+..+..+....++.............||+|| ..|+--|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCP-sTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCP-STLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECC-chhhhHHHHHHHHh
Confidence 478999999998752 3589999999999999775554444444322222223445899999 68888899999999
Q ss_pred CCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCC
Q 011901 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (475)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~ 276 (475)
++-+++....|+.......+..-++.+|+|++++.+.+.+.. +.-..+.++|+||-|-+.+. ...+.+..+.+..
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a- 1128 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRA- 1128 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHhh-
Confidence 998887776776665555555556789999999988754432 11235678999999988774 3455566666643
Q ss_pred CcEEEEccCCCh-hHHHHHHhh-----------------cCCCc------------------------------------
Q 011901 277 RQSMMFSATMPP-WIRSLTNKY-----------------LKNPL------------------------------------ 302 (475)
Q Consensus 277 ~~~i~~SAT~~~-~~~~~~~~~-----------------~~~~~------------------------------------ 302 (475)
.+.+.+|+||.. ++.++.+.| +.+|+
T Consensus 1129 ~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlK 1208 (1549)
T KOG0392|consen 1129 NHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLK 1208 (1549)
T ss_pred cceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 356788999842 111111111 00000
Q ss_pred ---------EE---------------------------EecCCCcccccc-----------------CeeEEEEe-----
Q 011901 303 ---------TV---------------------------DLVGDSDQKLAD-----------------GISLYSIA----- 324 (475)
Q Consensus 303 ---------~~---------------------------~~~~~~~~~~~~-----------------~~~~~~~~----- 324 (475)
.+ ....+....... ...-....
T Consensus 1209 edVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~ 1288 (1549)
T KOG0392|consen 1209 EDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPD 1288 (1549)
T ss_pred HHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcch
Confidence 00 000000000000 00000000
Q ss_pred -----------------ccCccchHHHHHHHHHhc---------------cCCcEEEEecChhhHHHHHHHHHccC--C-
Q 011901 325 -----------------TSMYEKPSIIGQLITEHA---------------KGGKCIVFTQTKRDADRLAHAMAKSY--N- 369 (475)
Q Consensus 325 -----------------~~~~~~~~~l~~l~~~~~---------------~~~~~lVf~~~~~~~~~l~~~L~~~~--~- 369 (475)
.....|...+.+++.+-. .+++++|||.-+...+.+.+.|-+++ .
T Consensus 1289 la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsV 1368 (1549)
T KOG0392|consen 1289 LAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSV 1368 (1549)
T ss_pred HHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCce
Confidence 011124455666655321 25699999999999999999886642 2
Q ss_pred -cccccCCCCHHHHHHHHHHHhcC-CCcEEEec-CccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCe--EE
Q 011901 370 -CEPLHGDISQSQRERTLSAFRDG-RFNILIAT-DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS--AI 444 (475)
Q Consensus 370 -~~~~h~~~~~~~r~~~~~~f~~g-~~~vlvaT-~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~--~~ 444 (475)
...+.|..++.+|.++.++|+++ .++||+-| -+.+.|+|+.+++.||+++-.|++-.=.|.+.||+|.|++-. ++
T Consensus 1369 tymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1369 TYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVY 1448 (1549)
T ss_pred eEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeee
Confidence 33689999999999999999998 78887755 588999999999999999999999999999999999997644 55
Q ss_pred EEecchhH
Q 011901 445 LIYTDQQA 452 (475)
Q Consensus 445 ~~~~~~~~ 452 (475)
-+++....
T Consensus 1449 RlItrGTL 1456 (1549)
T KOG0392|consen 1449 RLITRGTL 1456 (1549)
T ss_pred eehhcccH
Confidence 56665443
No 133
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.80 E-value=6.9e-18 Score=157.28 Aligned_cols=329 Identities=16% Similarity=0.193 Sum_probs=215.8
Q ss_pred cCCCCCcHHHHHhhhhHh-cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHh
Q 011901 117 RGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~-~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 195 (475)
..+..|.|+|++.+...+ +|..+++..++|-|||+.++..+-.... ....||+|| -.+-..|.+.+..
T Consensus 194 kLvs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra----------EwplliVcP-AsvrftWa~al~r 262 (689)
T KOG1000|consen 194 KLVSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA----------EWPLLIVCP-ASVRFTWAKALNR 262 (689)
T ss_pred HHHHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh----------cCcEEEEec-HHHhHHHHHHHHH
Confidence 345668899999998766 5677999999999999877544332221 334899999 4666789999999
Q ss_pred hCCCCceE-EEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCC
Q 011901 196 SAPSLDTI-CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (475)
Q Consensus 196 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~ 274 (475)
+++.+..+ ++.++.... ..+-....|.|.+++.+..+-.. +.-..+++||+||.|.+.+. -....+.++..+.
T Consensus 263 ~lps~~pi~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk 336 (689)
T KOG1000|consen 263 FLPSIHPIFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLK 336 (689)
T ss_pred hcccccceEEEecccCCc---cccccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhcc-chhhhhhhhhHHH
Confidence 99865542 333332211 11222357999999988755432 22345789999999987665 4555666666666
Q ss_pred CCCcEEEEccCCC-------------------hhHHHHHHhhcCCCcEEEecCCCc------------------------
Q 011901 275 QNRQSMMFSATMP-------------------PWIRSLTNKYLKNPLTVDLVGDSD------------------------ 311 (475)
Q Consensus 275 ~~~~~i~~SAT~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 311 (475)
...++|++|+||. +....+...|+.....-...+...
T Consensus 337 ~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dv 416 (689)
T KOG1000|consen 337 VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADV 416 (689)
T ss_pred HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999982 222334444432111000000000
Q ss_pred -cccccCeeEEEEeccC-------------------------------------ccchHHHHHHHHH-----hccCCcEE
Q 011901 312 -QKLADGISLYSIATSM-------------------------------------YEKPSIIGQLITE-----HAKGGKCI 348 (475)
Q Consensus 312 -~~~~~~~~~~~~~~~~-------------------------------------~~~~~~l~~l~~~-----~~~~~~~l 348 (475)
...+.......+.... .-|...+.+.+.. ...+.+.+
T Consensus 417 L~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kfl 496 (689)
T KOG1000|consen 417 LKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFL 496 (689)
T ss_pred HhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEE
Confidence 0000111111111100 0122222333322 23467999
Q ss_pred EEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCC-CcE-EEecCccccCCCCCCCCEEEEcCCCCChh
Q 011901 349 VFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR-FNI-LIATDVAARGLDVPNVDLIIHYELPNTSE 425 (475)
Q Consensus 349 Vf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~v-lvaT~~~~~Gidi~~~~~vi~~~~p~~~~ 425 (475)
|||......+.+...+.+ +.+..-+.|..++.+|....+.|+.++ +.| +++-++.++|+++..++.||+...+|++.
T Consensus 497 VFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPg 576 (689)
T KOG1000|consen 497 VFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPG 576 (689)
T ss_pred EEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCc
Confidence 999999999999999965 588889999999999999999998654 443 34557889999999999999999999999
Q ss_pred HHHHhhhccCCCCCCCeEEEEec--c--hhHHHHHHHHHHh
Q 011901 426 TFVHRTGRTGRAGKKGSAILIYT--D--QQARQVKSIERDV 462 (475)
Q Consensus 426 ~~~Q~~GR~gR~~~~g~~~~~~~--~--~~~~~~~~i~~~~ 462 (475)
-++|.-.|++|.|+++.+.+.|- . -|......+++.+
T Consensus 577 vLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 577 VLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred eEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 99999999999998876554443 2 3344556666555
No 134
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.78 E-value=1.3e-16 Score=170.63 Aligned_cols=108 Identities=18% Similarity=0.280 Sum_probs=81.2
Q ss_pred cCCcEEEEecChhhHHHHHHHHHccCC---cccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCC--CCEEEE
Q 011901 343 KGGKCIVFTQTKRDADRLAHAMAKSYN---CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN--VDLIIH 417 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~~~---~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~--~~~vi~ 417 (475)
.+++++|++++.+..+.+++.|..... ...+.-+++...|..+++.|++++-.||++|+...+|||+|+ +++||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999865322 223333444456788999999988889999999999999997 588998
Q ss_pred cCCCC-Chh-----------------------------HHHHhhhccCCCCCCCeEEEEecch
Q 011901 418 YELPN-TSE-----------------------------TFVHRTGRTGRAGKKGSAILIYTDQ 450 (475)
Q Consensus 418 ~~~p~-~~~-----------------------------~~~Q~~GR~gR~~~~g~~~~~~~~~ 450 (475)
...|. ++. .+.|.+||.-|...+--++++++++
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 88764 222 1359999999987654456666553
No 135
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.78 E-value=5.1e-18 Score=166.41 Aligned_cols=322 Identities=17% Similarity=0.227 Sum_probs=216.5
Q ss_pred CCcHHHHHhhhhHh----cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
+|-+||.-.++++. .+.+.|+..++|-|||.. .++.+..+... +....-||+||...|- .|.++|.+|
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~------g~~gpHLVVvPsSTle-NWlrEf~kw 470 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQI------GNPGPHLVVVPSSTLE-NWLREFAKW 470 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHc------CCCCCcEEEecchhHH-HHHHHHHHh
Confidence 48899999999865 467889999999999954 35666665442 2233469999988874 599999999
Q ss_pred CCCCceEEEEcCcchhHHHHHhh----cCCcEEEEccHHHHHHH-HhCCCCCCCccEEEEecccccccCCchHHHHHHHH
Q 011901 197 APSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLI-KRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271 (475)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l-~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~ 271 (475)
+|.+++...+|......+.+..- .+++|+++|+.....-- .+.-+.-.++.++|+||+|.+.+. ....++.++.
T Consensus 471 CPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~-~SeRy~~LM~ 549 (941)
T KOG0389|consen 471 CPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNR-TSERYKHLMS 549 (941)
T ss_pred CCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhcc-chHHHHHhcc
Confidence 99999999888876555444331 35899999997664211 111122456889999999988776 4455555443
Q ss_pred hCCCCCcEEEEccCCCh-hHHHHHHhh-----------------------------------------------------
Q 011901 272 RLPQNRQSMMFSATMPP-WIRSLTNKY----------------------------------------------------- 297 (475)
Q Consensus 272 ~~~~~~~~i~~SAT~~~-~~~~~~~~~----------------------------------------------------- 297 (475)
.- ....+++|+||-. ++..+.+..
T Consensus 550 I~--An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR 627 (941)
T KOG0389|consen 550 IN--ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRR 627 (941)
T ss_pred cc--ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 32 4456888999721 000000000
Q ss_pred --------cCC-CcEEEecC------------------------CC--ccc--c--------------------------
Q 011901 298 --------LKN-PLTVDLVG------------------------DS--DQK--L-------------------------- 314 (475)
Q Consensus 298 --------~~~-~~~~~~~~------------------------~~--~~~--~-------------------------- 314 (475)
+.. ...+.... .. ... +
T Consensus 628 ~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~m 707 (941)
T KOG0389|consen 628 LKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKM 707 (941)
T ss_pred HHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHH
Confidence 000 00000000 00 000 0
Q ss_pred ------------------c------------------cCeeEEEEe---ccCccchHHHHHHHHHhc-cCCcEEEEecCh
Q 011901 315 ------------------A------------------DGISLYSIA---TSMYEKPSIIGQLITEHA-KGGKCIVFTQTK 354 (475)
Q Consensus 315 ------------------~------------------~~~~~~~~~---~~~~~~~~~l~~l~~~~~-~~~~~lVf~~~~ 354 (475)
. ..+..+.+. .-...|...+..++.+.. +|.++|||..-.
T Consensus 708 ak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFT 787 (941)
T KOG0389|consen 708 AKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFT 787 (941)
T ss_pred HHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHH
Confidence 0 000000000 111235556666666553 478999999988
Q ss_pred hhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCC--CcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhh
Q 011901 355 RDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR--FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRT 431 (475)
Q Consensus 355 ~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~ 431 (475)
...+-+...|.. ++...-+.|...-.+|+.+++.|...+ .-+|++|.+.+-|||+..+++||++|...++-+=.|.-
T Consensus 788 qmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAE 867 (941)
T KOG0389|consen 788 QMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAE 867 (941)
T ss_pred HHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhH
Confidence 888888888864 477888999999999999999998764 44677999999999999999999999999999999999
Q ss_pred hccCCCCCC--CeEEEEecchhHH
Q 011901 432 GRTGRAGKK--GSAILIYTDQQAR 453 (475)
Q Consensus 432 GR~gR~~~~--g~~~~~~~~~~~~ 453 (475)
-|++|.|+. -.++-+++.+..+
T Consensus 868 DRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 868 DRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred HHHHhhCCcceeEEEEEEecCcHH
Confidence 999999864 5566677776554
No 136
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.78 E-value=7e-17 Score=164.43 Aligned_cols=284 Identities=11% Similarity=0.084 Sum_probs=175.5
Q ss_pred EcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh---
Q 011901 142 RARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL--- 218 (475)
Q Consensus 142 ~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 218 (475)
.+-+|||||.+|+-.+-..+.. |.++|+++|...|+.|+.+.|++.++...+.+++++.+..++.+.+
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~---------Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~ 236 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA---------GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAV 236 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc---------CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHH
Confidence 3446999999997777666643 7789999999999999999999999756777788877766554433
Q ss_pred -hcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCC-----c-hHHHHHHHHhCCCCCcEEEEccCCChhHH
Q 011901 219 -DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-----F-AEDVEVILERLPQNRQSMMFSATMPPWIR 291 (475)
Q Consensus 219 -~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~-----~-~~~~~~i~~~~~~~~~~i~~SAT~~~~~~ 291 (475)
.+...|+|||...++ ..+.++++||+||-|.-...+ + ..++... +....+..+|+.||||+-+..
T Consensus 237 ~~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~-Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 237 LRGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALL-RAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred hCCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHH-HHHHcCCcEEEECCCCCHHHH
Confidence 455899999987766 468999999999999543221 1 2233333 333457889999999887655
Q ss_pred HHHHhhcCCCcEEEecCCCccccccCeeEEEEec-----cC-----ccchHHHHHHHHHhccCCcEEEEecChhhHH---
Q 011901 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-----SM-----YEKPSIIGQLITEHAKGGKCIVFTQTKRDAD--- 358 (475)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~--- 358 (475)
......... .+.............+....... +. .--...+..+.+.+.+| ++|||.|.+..+-
T Consensus 309 ~~~~~g~~~--~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~ 385 (665)
T PRK14873 309 ALVESGWAH--DLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLA 385 (665)
T ss_pred HHHhcCcce--eeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeE
Confidence 443322111 11100000000111111111100 00 01124555566666677 9999999866532
Q ss_pred --------------------------------------------------------HHHHHHHccCCcccccCCCCHHHH
Q 011901 359 --------------------------------------------------------RLAHAMAKSYNCEPLHGDISQSQR 382 (475)
Q Consensus 359 --------------------------------------------------------~l~~~L~~~~~~~~~h~~~~~~~r 382 (475)
++.+.|.+.|+-..+. .+ ++
T Consensus 386 C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~-r~---d~ 461 (665)
T PRK14873 386 CARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVV-TS---GG 461 (665)
T ss_pred hhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEE-EE---Ch
Confidence 3333333322211111 11 22
Q ss_pred HHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCC------------ChhHHHHhhhccCCCCCCCeEEEEecch
Q 011901 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN------------TSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (475)
Q Consensus 383 ~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~------------~~~~~~Q~~GR~gR~~~~g~~~~~~~~~ 450 (475)
+.+++.|. ++.+|||+|+.++.=+. ++++.|++.|... ....+.|..||+||.+++|.+++...++
T Consensus 462 d~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~ 539 (665)
T PRK14873 462 DQVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESS 539 (665)
T ss_pred HHHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCC
Confidence 34777886 58999999993221121 4678887776542 3445679999999999999999887555
Q ss_pred h
Q 011901 451 Q 451 (475)
Q Consensus 451 ~ 451 (475)
+
T Consensus 540 ~ 540 (665)
T PRK14873 540 L 540 (665)
T ss_pred C
Confidence 4
No 137
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.77 E-value=3.8e-16 Score=157.01 Aligned_cols=105 Identities=16% Similarity=0.160 Sum_probs=76.6
Q ss_pred cCCcEEEEecChhhHHHHHHHHHccCCc-ccccCCCCHHHHHHHHHHHhc----CCCcEEEecCccccCCCC--------
Q 011901 343 KGGKCIVFTQTKRDADRLAHAMAKSYNC-EPLHGDISQSQRERTLSAFRD----GRFNILIATDVAARGLDV-------- 409 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~h~~~~~~~r~~~~~~f~~----g~~~vlvaT~~~~~Gidi-------- 409 (475)
.+++++|.+.+...++.+++.|...... ..+.|+.+ .+...++.|++ |.-.||++|+.+.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4679999999999999999999776543 34455432 34567888876 468899999999999999
Q ss_pred CC--CCEEEEcCCCCCh-------------------------hHHHHhhhccCCCCCC--CeEEEEecc
Q 011901 410 PN--VDLIIHYELPNTS-------------------------ETFVHRTGRTGRAGKK--GSAILIYTD 449 (475)
Q Consensus 410 ~~--~~~vi~~~~p~~~-------------------------~~~~Q~~GR~gR~~~~--g~~~~~~~~ 449 (475)
|+ +++||+...|..+ -.+.|-+||--|...+ --++.++++
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDG 615 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeC
Confidence 33 8899998877321 1245999999997554 334444444
No 138
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=6.3e-17 Score=163.29 Aligned_cols=311 Identities=16% Similarity=0.177 Sum_probs=194.3
Q ss_pred CCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC--
Q 011901 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~-- 198 (475)
.+++.|.-.-=.+.. ..+..+.||=|||+++.+|++-..+. |..|-+++.+.-||..=++++...+.
T Consensus 78 r~ydVQliGglvLh~--G~IAEMkTGEGKTLvAtLpayLnAL~---------GkgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 78 RPYDVQIIGGIILDL--GSVAEMKTGEGKTITSIAPVYLNALT---------GKGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred CcCchHHHHHHHHhc--CCeeeecCCCCccHHHHHHHHHHHhc---------CCceEEEecchhhhhhhHHHHHHHHHHh
Confidence 477777555544444 46899999999999999988654433 56688889999999766666555443
Q ss_pred CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHH-HHHHHhCC------CCCCCccEEEEecccccccC-----------
Q 011901 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQMLSV----------- 260 (475)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~~~~~vViDE~H~~~~~----------- 260 (475)
++++.+...+.....+.. .+.+||+.||...| ++++..+. .....+.+.||||+|.++=.
T Consensus 147 GLsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~ 224 (925)
T PRK12903 147 GLSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGG 224 (925)
T ss_pred CCceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCC
Confidence 667776666555444333 45689999999876 34443321 12466889999999976411
Q ss_pred -----CchHHHHHHHHhCCC------------------------------------------------------------
Q 011901 261 -----GFAEDVEVILERLPQ------------------------------------------------------------ 275 (475)
Q Consensus 261 -----~~~~~~~~i~~~~~~------------------------------------------------------------ 275 (475)
.....+..+...+..
T Consensus 225 ~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYi 304 (925)
T PRK12903 225 QSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYI 304 (925)
T ss_pred CccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceE
Confidence 011111222222210
Q ss_pred --------------------------------------------------------CCcEEEEccCCChhHHHHHHhhcC
Q 011901 276 --------------------------------------------------------NRQSMMFSATMPPWIRSLTNKYLK 299 (475)
Q Consensus 276 --------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~ 299 (475)
-..+.+||+|.......+...|.-
T Consensus 305 V~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l 384 (925)
T PRK12903 305 VRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNM 384 (925)
T ss_pred EECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCC
Confidence 013345555554444444433322
Q ss_pred CCcEEEecCCCccccccCeeEEEEeccCccchHH-HHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCC
Q 011901 300 NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI-IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDI 377 (475)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~ 377 (475)
+-..+ ............. .+.....+|... +..+.+.+..|.++||.|.+++.++.++..|.+ +++...++.+.
T Consensus 385 ~Vv~I---PTnkP~~R~D~~d-~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~ 460 (925)
T PRK12903 385 RVNVV---PTNKPVIRKDEPD-SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQ 460 (925)
T ss_pred CEEEC---CCCCCeeeeeCCC-cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccc
Confidence 11111 1100000000000 111222334433 344444567899999999999999999999975 57777887764
Q ss_pred CHHHHHHHHHHHhcCC-CcEEEecCccccCCCCCCCC--------EEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEec
Q 011901 378 SQSQRERTLSAFRDGR-FNILIATDVAARGLDVPNVD--------LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448 (475)
Q Consensus 378 ~~~~r~~~~~~f~~g~-~~vlvaT~~~~~Gidi~~~~--------~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~ 448 (475)
...|-+-+- .+|+ -.|.|||++++||.||.--. +||....|.|..--.|.+||+||.|.+|.+-.|.+
T Consensus 461 ~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 461 NAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred hhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEe
Confidence 433322222 4553 46999999999999997433 88888888888888899999999999999888877
Q ss_pred chh
Q 011901 449 DQQ 451 (475)
Q Consensus 449 ~~~ 451 (475)
-+|
T Consensus 538 LeD 540 (925)
T PRK12903 538 LDD 540 (925)
T ss_pred cch
Confidence 544
No 139
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.77 E-value=7.9e-18 Score=159.14 Aligned_cols=279 Identities=19% Similarity=0.233 Sum_probs=182.6
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh
Q 011901 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (475)
++-+|||.||||.-+ ++++.. ....++.-|.+-||.++++.+... ++.+.+++|.......-.
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~---------aksGvycGPLrLLA~EV~~r~na~--gipCdL~TGeE~~~~~~~-- 256 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKS---------AKSGVYCGPLRLLAHEVYDRLNAL--GIPCDLLTGEERRFVLDN-- 256 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhh---------hccceecchHHHHHHHHHHHhhhc--CCCccccccceeeecCCC--
Confidence 667999999999744 455533 334699999999999999999988 456666666543221110
Q ss_pred hcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHH-HHHHhCCCCCcEEEEccCCChhHHHHHHhh
Q 011901 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE-VILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (475)
Q Consensus 219 ~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~-~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 297 (475)
.+.+..+-||.++..- -..+++.|+||++.|.+.+.+-.+. +++.......++.+ - |.+-.+....
T Consensus 257 ~~~a~hvScTVEM~sv--------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG---e--psvldlV~~i 323 (700)
T KOG0953|consen 257 GNPAQHVSCTVEMVSV--------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG---E--PSVLDLVRKI 323 (700)
T ss_pred CCcccceEEEEEEeec--------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC---C--chHHHHHHHH
Confidence 1236788888776541 3467889999999998887654444 33333334444433 2 2223333332
Q ss_pred c---CCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHcc--CCccc
Q 011901 298 L---KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS--YNCEP 372 (475)
Q Consensus 298 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~ 372 (475)
+ ++...+.. |....... -.+.+..-+..+.+|..++ |-+++..-.+...+.+. .+|.+
T Consensus 324 ~k~TGd~vev~~--------------YeRl~pL~-v~~~~~~sl~nlk~GDCvV--~FSkk~I~~~k~kIE~~g~~k~aV 386 (700)
T KOG0953|consen 324 LKMTGDDVEVRE--------------YERLSPLV-VEETALGSLSNLKPGDCVV--AFSKKDIFTVKKKIEKAGNHKCAV 386 (700)
T ss_pred HhhcCCeeEEEe--------------ecccCcce-ehhhhhhhhccCCCCCeEE--EeehhhHHHHHHHHHHhcCcceEE
Confidence 2 12222221 11111111 1112222334444555443 44567777777777543 45999
Q ss_pred ccCCCCHHHHHHHHHHHhc--CCCcEEEecCccccCCCCCCCCEEEEcCCC---------CChhHHHHhhhccCCCCC--
Q 011901 373 LHGDISQSQRERTLSAFRD--GRFNILIATDVAARGLDVPNVDLIIHYELP---------NTSETFVHRTGRTGRAGK-- 439 (475)
Q Consensus 373 ~h~~~~~~~r~~~~~~f~~--g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p---------~~~~~~~Q~~GR~gR~~~-- 439 (475)
++|+++++.|...-..|++ ++++|||||+++++|+|+ +++-||.++.- .+..+..|..|||||.|.
T Consensus 387 IYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 387 IYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred EecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 9999999999999999987 899999999999999999 89999988753 467889999999999763
Q ss_pred -CCeEEEEecchhHHHHHHHHHHhCCCcccc
Q 011901 440 -KGSAILIYTDQQARQVKSIERDVGCRFTQV 469 (475)
Q Consensus 440 -~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (475)
.|.+..+..++ +..+.+-+..+++++
T Consensus 466 ~~G~vTtl~~eD----L~~L~~~l~~p~epi 492 (700)
T KOG0953|consen 466 PQGEVTTLHSED----LKLLKRILKRPVEPI 492 (700)
T ss_pred cCceEEEeeHhh----HHHHHHHHhCCchHH
Confidence 47666666543 666666676666655
No 140
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.76 E-value=6.9e-18 Score=139.08 Aligned_cols=118 Identities=47% Similarity=0.821 Sum_probs=107.0
Q ss_pred cchHHHHHHHHHhc-cCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccC
Q 011901 329 EKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406 (475)
Q Consensus 329 ~~~~~l~~l~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 406 (475)
.|...+..++.... .++++||||++...++.+.+.|.+ ..++..+||+++..+|..+++.|.+|...++++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 56666777766553 578999999999999999999975 5788999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEE
Q 011901 407 LDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446 (475)
Q Consensus 407 idi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~ 446 (475)
+|+|++++||+++.|++...+.|++||++|.|+.|.|+++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887764
No 141
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.76 E-value=2.4e-17 Score=144.43 Aligned_cols=149 Identities=24% Similarity=0.246 Sum_probs=103.4
Q ss_pred CCcHHHHHhhhhHhc-------CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHH
Q 011901 121 KLFPIQKAVLEPAMQ-------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~-------~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 193 (475)
+|+++|.+++..+.. .+++++.+|||||||.+++..+.... . ++++++|+..|+.|+.+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-~-----------~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-R-----------KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-C-----------EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-c-----------ceeEecCHHHHHHHHHHHH
Confidence 589999999999884 57899999999999998875555443 1 6999999999999999999
Q ss_pred HhhCCCCceEEEE-------------cCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCC-----------CCCCCccEE
Q 011901 194 HESAPSLDTICVY-------------GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-----------LNLSEVQFV 249 (475)
Q Consensus 194 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~-----------~~~~~~~~v 249 (475)
..+.......... ................+++++|.+.+........ ......++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 7665433322111 1111112222334568999999999987765421 123467899
Q ss_pred EEecccccccCCchHH-HHHHHHhCCCCCcEEEEccCCC
Q 011901 250 VLDEADQMLSVGFAED-VEVILERLPQNRQSMMFSATMP 287 (475)
Q Consensus 250 ViDE~H~~~~~~~~~~-~~~i~~~~~~~~~~i~~SAT~~ 287 (475)
|+||+|++.. .. +..++. .+...+++|||||.
T Consensus 151 I~DEaH~~~~----~~~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 151 IIDEAHHYPS----DSSYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEETGGCTHH----HHHHHHHHH--SSCCEEEEEESS-S
T ss_pred EEehhhhcCC----HHHHHHHHc--CCCCeEEEEEeCcc
Confidence 9999999643 33 455555 45677999999985
No 142
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.75 E-value=5.2e-17 Score=135.63 Aligned_cols=143 Identities=42% Similarity=0.586 Sum_probs=108.9
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC-CCceEEEEcCcchhHHH
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQM 215 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 215 (475)
+++++.++||+|||.+++..+...... ....++++++|++.++.|+.+.+..... ...+....+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-------ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH
Confidence 368999999999999888877766543 2356799999999999999999988875 45556666665555444
Q ss_pred HHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCC
Q 011901 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 286 (475)
.....+.+|+++|++.+.............++++|+||+|.+....................+++++||||
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 44556799999999999888876655566889999999999877654443223344456778899999996
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.74 E-value=3.7e-16 Score=158.79 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=89.5
Q ss_pred CCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
|. .+++.|.-+ .+.-.+..+..+.||.|||+++.+|++-..+. |..|-|++++..||.+-++++...+
T Consensus 74 G~-r~ydvQlig--~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~---------G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 74 GL-RHFDVQLIG--GLVLNDGKIAEMKTGEGKTLVATLPAYLNALT---------GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred CC-CCCchHhhh--hHhhcCCccccccCCCCchHHHHHHHHHHHhc---------CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 44 366677544 44444578999999999999999998544332 6669999999999999888877664
Q ss_pred C--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHH-HHHHhCC------CCCCCccEEEEecccccc
Q 011901 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI-DLIKRNA------LNLSEVQFVVLDEADQML 258 (475)
Q Consensus 198 ~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~-~~l~~~~------~~~~~~~~vViDE~H~~~ 258 (475)
. ++++.++.++.+...+.. ...+||+.||...|- +++..+. .....+.+.||||+|.++
T Consensus 142 ~~LGLsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHcCCceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 3 567777766666554433 455899999997653 3332221 124568899999999753
No 144
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.71 E-value=2.6e-17 Score=121.98 Aligned_cols=72 Identities=38% Similarity=0.779 Sum_probs=70.1
Q ss_pred cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCC
Q 011901 367 SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAG 438 (475)
Q Consensus 367 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~ 438 (475)
++.+..+||+++..+|..+++.|.+|+..|||||+++++|+|+|++++||++++|++...|.|++||++|.|
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 588999999999999999999999999999999999999999999999999999999999999999999976
No 145
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.69 E-value=4.4e-14 Score=146.77 Aligned_cols=105 Identities=21% Similarity=0.413 Sum_probs=76.2
Q ss_pred cCCcEEEEecChhhHHHHHHHHHccCC-cccccCCCCHHHHHHHHHHHh----cCCCcEEEecCccccCCCCCC--CCEE
Q 011901 343 KGGKCIVFTQTKRDADRLAHAMAKSYN-CEPLHGDISQSQRERTLSAFR----DGRFNILIATDVAARGLDVPN--VDLI 415 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~h~~~~~~~r~~~~~~f~----~g~~~vlvaT~~~~~Gidi~~--~~~v 415 (475)
.+++++|++++.+..+.++..|..... -...+|. ..+..+++.|+ .|+-.||++|..+.+|||+|+ +++|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 445699999999999999998864322 2334554 24667777676 467789999999999999997 7899
Q ss_pred EEcCCCC-Chh-----------------------------HHHHhhhccCCCCCCCeEEEEecch
Q 011901 416 IHYELPN-TSE-----------------------------TFVHRTGRTGRAGKKGSAILIYTDQ 450 (475)
Q Consensus 416 i~~~~p~-~~~-----------------------------~~~Q~~GR~gR~~~~g~~~~~~~~~ 450 (475)
|+...|. .+. .+.|.+||.-|...+--++++++++
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 9988774 121 1359999999986554455555553
No 146
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.69 E-value=8.7e-15 Score=153.17 Aligned_cols=103 Identities=20% Similarity=0.311 Sum_probs=76.2
Q ss_pred CCcEEEEecChhhHHHHHHHHHccCC--cccccCCCCHHHHHHHHHHHhcCCC-cEEEecCccccCCCCCC--CCEEEEc
Q 011901 344 GGKCIVFTQTKRDADRLAHAMAKSYN--CEPLHGDISQSQRERTLSAFRDGRF-NILIATDVAARGLDVPN--VDLIIHY 418 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~~~--~~~~h~~~~~~~r~~~~~~f~~g~~-~vlvaT~~~~~Gidi~~--~~~vi~~ 418 (475)
+++++||+++.+.++.+.+.+..... ....+|.. .+...++.|.++.- .++|+|..+++|+|+|+ ...||+.
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 45899999999999999999976533 23445443 44578888877654 89999999999999997 5789988
Q ss_pred CCCC-Chh-----------------------------HHHHhhhccCCCCCCCeEEEEecc
Q 011901 419 ELPN-TSE-----------------------------TFVHRTGRTGRAGKKGSAILIYTD 449 (475)
Q Consensus 419 ~~p~-~~~-----------------------------~~~Q~~GR~gR~~~~g~~~~~~~~ 449 (475)
+.|. ++. .+.|.+||+-|...+.-.+++++.
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 8774 122 246999999997544334444443
No 147
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.68 E-value=5.1e-16 Score=156.18 Aligned_cols=317 Identities=18% Similarity=0.248 Sum_probs=206.3
Q ss_pred CCcHHHHHhhhhHhc----CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 121 KLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~----~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
++.+||.+.+.++.+ +-+.++..++|-|||..- +..+..+.+.... ....+|+||+..|.+ |..+|..|
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~~-----~GP~LvivPlstL~N-W~~Ef~kW 466 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQM-----QGPFLIIVPLSTLVN-WSSEFPKW 466 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHccc-----CCCeEEeccccccCC-chhhcccc
Confidence 699999999998764 356899999999999654 5555566554332 333799999999987 89999999
Q ss_pred CCCCceEEEEcCcchhHH--HHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCC
Q 011901 197 APSLDTICVYGGTPISHQ--MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (475)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~ 274 (475)
.|.+..+...|....... ........+|+++|++.+.. ....+.--++.++||||.|+|.+. ...+...+..--
T Consensus 467 aPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t~y 542 (1157)
T KOG0386|consen 467 APSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNTHY 542 (1157)
T ss_pred ccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch--hhHHHHHhhccc
Confidence 988776665554332211 12223569999999998764 111112235678999999998764 222333333222
Q ss_pred CCCcEEEEccCCChhH-------------------HHHHHhh--------------------------------------
Q 011901 275 QNRQSMMFSATMPPWI-------------------RSLTNKY-------------------------------------- 297 (475)
Q Consensus 275 ~~~~~i~~SAT~~~~~-------------------~~~~~~~-------------------------------------- 297 (475)
.....+++|+||..+- ..|...|
T Consensus 543 ~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlK 622 (1157)
T KOG0386|consen 543 RAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLK 622 (1157)
T ss_pred cchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhh
Confidence 2334566677752100 0000000
Q ss_pred ------cCCCcEEEec--------------------------CCCcccc----------ccC-----------eeEE---
Q 011901 298 ------LKNPLTVDLV--------------------------GDSDQKL----------ADG-----------ISLY--- 321 (475)
Q Consensus 298 ------~~~~~~~~~~--------------------------~~~~~~~----------~~~-----------~~~~--- 321 (475)
+.+.....+. +...... .++ +...
T Consensus 623 keVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~ 702 (1157)
T KOG0386|consen 623 KEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDI 702 (1157)
T ss_pred HHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccCh
Confidence 0000000000 0000000 000 0000
Q ss_pred EEeccCccchHHHHHHHHHh-ccCCcEEEEecChhhHHHHHHHHH-ccCCcccccCCCCHHHHHHHHHHHhcCC---CcE
Q 011901 322 SIATSMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR---FNI 396 (475)
Q Consensus 322 ~~~~~~~~~~~~l~~l~~~~-~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~---~~v 396 (475)
........|..++..++-.+ ..|++++.||.-..-..-+..+|. +.++...+.|....++|...++.|..-. ...
T Consensus 703 ~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 703 KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 01122234666666666554 348899999998888888888885 4578888999999999999999998643 456
Q ss_pred EEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEec
Q 011901 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448 (475)
Q Consensus 397 lvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~ 448 (475)
|.+|.+.+.|+|...++.||++|..|++.+..|+--|+.|.|+.-.+-++..
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeee
Confidence 7789999999999999999999999999999999999999998766554444
No 148
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=2e-14 Score=146.01 Aligned_cols=124 Identities=19% Similarity=0.271 Sum_probs=88.6
Q ss_pred CcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC--C
Q 011901 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--S 199 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~--~ 199 (475)
+++.| .+-.+.-....+..+.||-|||+++.+|++-..+. |..|-+++++.-||..=++++...+. +
T Consensus 86 ~ydVQ--liGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~---------GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 86 HFDVQ--LIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT---------GKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred cchhH--HHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhc---------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 55666 44444444568999999999999999998765544 66699999999999887777766543 6
Q ss_pred CceEEEEcCcchhHHHHHhhcCCcEEEEccHHH-HHHHHh------CCCCCCCccEEEEecccccc
Q 011901 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKR------NALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~------~~~~~~~~~~vViDE~H~~~ 258 (475)
+++.++.++.+...+ ...+.+||+.||+..| ++++.. .......+.+.||||+|.++
T Consensus 155 Ltvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 155 LSVGLIQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CeEEEECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 677776665554433 3456789999999887 222222 12235678899999999864
No 149
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.64 E-value=1.2e-14 Score=141.02 Aligned_cols=123 Identities=17% Similarity=0.321 Sum_probs=103.0
Q ss_pred cchHHHHHHHHHh-ccCCcEEEEecChhhHHHHHHHHH-ccCCcccccCCCCHHHHHHHHHHHhcCCC-cEEEecCcccc
Q 011901 329 EKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF-NILIATDVAAR 405 (475)
Q Consensus 329 ~~~~~l~~l~~~~-~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~~-~vlvaT~~~~~ 405 (475)
.|...+..++..+ ..|+++++|+.-.+..+.+.++|. +++...-+.|.....+|..+..+|+...+ -.|++|.+.+.
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 4556677776655 457899999999999999999986 56888899999999999999999998654 45678889999
Q ss_pred CCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCe--EEEEecchh
Q 011901 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS--AILIYTDQQ 451 (475)
Q Consensus 406 Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~--~~~~~~~~~ 451 (475)
|||+..++.||+||..|++..-.|...|++|.|+.-. ++-+++...
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 9999999999999999999999999999999887543 555555543
No 150
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.62 E-value=3.3e-13 Score=129.29 Aligned_cols=287 Identities=21% Similarity=0.240 Sum_probs=195.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhhCCCC-ceE------EEEc---------------CcchhHHHHHh----------
Q 011901 171 GRNPLCLVLAPTRELAKQVEKEFHESAPSL-DTI------CVYG---------------GTPISHQMRAL---------- 218 (475)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~------~~~~---------------~~~~~~~~~~~---------- 218 (475)
-..|+||||+|++..|.++.+.+.++.+.- .+. --+| .....+.....
T Consensus 35 ftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 35 FTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 467899999999999999988887766531 000 0011 00111111111
Q ss_pred --------------hcCCcEEEEccHHHHHHHHh------CCCCCCCccEEEEecccccc--cCCchHHHHHHHHhCCC-
Q 011901 219 --------------DYGVDAVVGTPGRVIDLIKR------NALNLSEVQFVVLDEADQML--SVGFAEDVEVILERLPQ- 275 (475)
Q Consensus 219 --------------~~~~~Ilv~T~~~l~~~l~~------~~~~~~~~~~vViDE~H~~~--~~~~~~~~~~i~~~~~~- 275 (475)
...+||+|++|=.|...+.. ....++.+.++|+|.+|.+. +|.....+...+...|.
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCC
Confidence 02589999999999988874 22358899999999999654 44333333333333332
Q ss_pred --------------------CCcEEEEccCCChhHHHHHHhhcCCCcE-EEecCCCc-----cccccCeeEEEEeccC--
Q 011901 276 --------------------NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSD-----QKLADGISLYSIATSM-- 327 (475)
Q Consensus 276 --------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~-- 327 (475)
-+|.|++|+...|.+..+....+.+... +.+..... ..+...+.+.....+.
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 1599999999999999998886554332 22222212 1222333333222111
Q ss_pred --c---cch-----HHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHcc-CCcccccCCCCHHHHHHHHHHHhcCCCcE
Q 011901 328 --Y---EKP-----SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396 (475)
Q Consensus 328 --~---~~~-----~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 396 (475)
. .+. .++..+.+ ....+++|||+|+.-+--++...|++. .....+|...+..+..++...|.+|+.++
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~i 353 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPI 353 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceE
Confidence 1 111 12222332 224579999999999999999999754 77888999999999999999999999999
Q ss_pred EEecCccc--cCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCC------CCeEEEEecchhHHHHHHH
Q 011901 397 LIATDVAA--RGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGK------KGSAILIYTDQQARQVKSI 458 (475)
Q Consensus 397 lvaT~~~~--~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~------~g~~~~~~~~~~~~~~~~i 458 (475)
|+.|.-+. +-..+.++++||.|++|..+.-|...+.-.+.... ...|.++|+.-|.-.++.|
T Consensus 354 LL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 354 LLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 99998654 77889999999999999999999888866655432 5789999999877655554
No 151
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.62 E-value=3.2e-14 Score=133.03 Aligned_cols=108 Identities=17% Similarity=0.302 Sum_probs=91.0
Q ss_pred CCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcC-CCcEE-EecCccccCCCCCCCCEEEEcCC
Q 011901 344 GGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDG-RFNIL-IATDVAARGLDVPNVDLIIHYEL 420 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vl-vaT~~~~~Gidi~~~~~vi~~~~ 420 (475)
.-+.|||..-....+.+...|.+ ++.|+.+.|+|++..|...++.|.+. .+.|+ ++-.+.++.+|+..+++|+++|+
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP 717 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP 717 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc
Confidence 45889999999999999988865 69999999999999999999999875 45554 45577788899999999999999
Q ss_pred CCChhHHHHhhhccCCCCC--CCeEEEEecchh
Q 011901 421 PNTSETFVHRTGRTGRAGK--KGSAILIYTDQQ 451 (475)
Q Consensus 421 p~~~~~~~Q~~GR~gR~~~--~g~~~~~~~~~~ 451 (475)
.|+++--.|...|++|.|+ +-.++.|+-++.
T Consensus 718 WWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 718 WWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred cccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 9999999999999999885 455666665543
No 152
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.62 E-value=3.9e-14 Score=145.44 Aligned_cols=308 Identities=17% Similarity=0.237 Sum_probs=201.8
Q ss_pred CcHHHHHhhhhHhc-CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC--
Q 011901 122 LFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (475)
Q Consensus 122 l~~~Q~~~i~~i~~-~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~-- 198 (475)
..|+|.++.+.+.+ +.++++.+|+|||||.++-++++. .....+++++.|..+.+...+..+.+.+.
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----------CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 46788888888775 456999999999999998877764 23466799999999999888877766554
Q ss_pred -CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchH------HHHHHHH
Q 011901 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE------DVEVILE 271 (475)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~------~~~~i~~ 271 (475)
+..++.++|......+ +....+|+|+||+.+..+ . ..+.+++.|.||.|.+.+. ++. .++.+-.
T Consensus 1214 ~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGV-YGAVYEVICSMRYIAS 1284 (1674)
T ss_pred cCceEEecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhccc-CCceEEEEeeHHHHHH
Confidence 3334444444443332 223369999999998765 2 4778899999999987643 221 2555666
Q ss_pred hCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCee--EEEEeccCcc----chHHHHHHHHHhccCC
Q 011901 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS--LYSIATSMYE----KPSIIGQLITEHAKGG 345 (475)
Q Consensus 272 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~l~~l~~~~~~~~ 345 (475)
++-++.+++.+|..+.+. .++ .++ .+..+..........+-.+. .+.+...... ....+..+.+....++
T Consensus 1285 q~~k~ir~v~ls~~lana-~d~--ig~-s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k 1360 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLANA-RDL--IGA-SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRK 1360 (1674)
T ss_pred HHHhheeEEEeehhhccc-hhh--ccc-cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCC
Confidence 666777888888776543 112 111 12222111122222222222 2221111111 1233445555556788
Q ss_pred cEEEEecChhhHHHHHHHHHc-----------------------cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCc
Q 011901 346 KCIVFTQTKRDADRLAHAMAK-----------------------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402 (475)
Q Consensus 346 ~~lVf~~~~~~~~~l~~~L~~-----------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 402 (475)
+.+||+|+++.+..++..+-. ..++.+=|.+++..+..-+..-|..|.+.|+|...-
T Consensus 1361 ~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~ 1440 (1674)
T KOG0951|consen 1361 PAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD 1440 (1674)
T ss_pred CeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc
Confidence 999999999998866544311 223333388899999899999999999999998866
Q ss_pred cccCCCCCCCCEEEEcC-----------CCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHH
Q 011901 403 AARGLDVPNVDLIIHYE-----------LPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457 (475)
Q Consensus 403 ~~~Gidi~~~~~vi~~~-----------~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~ 457 (475)
..|+-.. .+.||.++ .+.+.++..|++|++.|+ |.|+++........++.
T Consensus 1441 -~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykk 1501 (1674)
T KOG0951|consen 1441 -CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKK 1501 (1674)
T ss_pred -ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHH
Confidence 6677653 44555332 356788999999999994 78998888776655543
No 153
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.60 E-value=1.1e-13 Score=140.86 Aligned_cols=122 Identities=20% Similarity=0.357 Sum_probs=100.7
Q ss_pred chHHHHHHHHHh-ccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCC--CcEEEecCcccc
Q 011901 330 KPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR--FNILIATDVAAR 405 (475)
Q Consensus 330 ~~~~l~~l~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlvaT~~~~~ 405 (475)
|...+.-+++++ ..|+++|||+.-....+-+..+|.- ++-..-+.|..+.++|+..+++|+... +..+++|-.-+.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 556666666665 4688999999999999999999974 466778899999999999999998764 566778889999
Q ss_pred CCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCC--CeEEEEecchh
Q 011901 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKK--GSAILIYTDQQ 451 (475)
Q Consensus 406 Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~--g~~~~~~~~~~ 451 (475)
|||+.+++.||+||..||+.--.|.-.|+.|.|+. -..|-++++..
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 99999999999999999998888888888887764 44556666543
No 154
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.57 E-value=9.3e-15 Score=109.50 Aligned_cols=79 Identities=47% Similarity=0.876 Sum_probs=72.6
Q ss_pred HHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCC
Q 011901 360 LAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAG 438 (475)
Q Consensus 360 l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~ 438 (475)
+.+.|.+ ++.+..+||+++.++|..+++.|.+|...++|+|+++++|+|+|++++||++++|++...|.|++||++|.|
T Consensus 3 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 3 LAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred HHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 4445543 478899999999999999999999999999999999999999999999999999999999999999999975
No 155
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.57 E-value=3.1e-13 Score=139.63 Aligned_cols=308 Identities=19% Similarity=0.169 Sum_probs=171.9
Q ss_pred CCcHHHHHhhhhHhcC------Cc--EEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHH
Q 011901 121 KLFPIQKAVLEPAMQG------RD--MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~------~~--~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~ 192 (475)
.-..||.+|.+.+..- .. ++-.|.||||||++= .-|+..+.. ...|.+..+-.-.|.|.-|.-+.
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd------~~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRD------DKQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCC------CCCCceEEEEccccceeccchHH
Confidence 3467999999987641 12 455799999999754 334444422 23466777877888888888777
Q ss_pred HHhhCC--CCceEEEEcCcchhHH-------------------------------------------HHHhh--------
Q 011901 193 FHESAP--SLDTICVYGGTPISHQ-------------------------------------------MRALD-------- 219 (475)
Q Consensus 193 ~~~~~~--~~~~~~~~~~~~~~~~-------------------------------------------~~~~~-------- 219 (475)
+++... +-...++.|+....+- ...+.
T Consensus 481 ~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 481 LKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 766442 2223333433211100 00000
Q ss_pred cCCcEEEEccHHHHHHHHh--CC-CCCC----CccEEEEecccccccCCchHHHHHHHHhCC-CCCcEEEEccCCChhHH
Q 011901 220 YGVDAVVGTPGRVIDLIKR--NA-LNLS----EVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIR 291 (475)
Q Consensus 220 ~~~~Ilv~T~~~l~~~l~~--~~-~~~~----~~~~vViDE~H~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~ 291 (475)
-...++|||++.++..... .. ..+. .-+.||+||+|.+... ....+..++.... -...+++||||+|+...
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 1368999999999877632 11 1111 1346999999986544 2233333333221 25779999999998764
Q ss_pred HHHH-hh----------cCC---CcEEE-e-cCCCcccc---c-----------------------cCeeEE-EEeccCc
Q 011901 292 SLTN-KY----------LKN---PLTVD-L-VGDSDQKL---A-----------------------DGISLY-SIATSMY 328 (475)
Q Consensus 292 ~~~~-~~----------~~~---~~~~~-~-~~~~~~~~---~-----------------------~~~~~~-~~~~~~~ 328 (475)
.... .| .+. +..+. . +++..... . .....- .......
T Consensus 640 ~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~ 719 (1110)
T TIGR02562 640 KTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSL 719 (1110)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCc
Confidence 4222 12 221 11111 0 00000000 0 000000 1111111
Q ss_pred c-----ch-HHHHHH----HHHhc--------cCCc---EEEEecChhhHHHHHHHHHcc-------CCcccccCCCCHH
Q 011901 329 E-----KP-SIIGQL----ITEHA--------KGGK---CIVFTQTKRDADRLAHAMAKS-------YNCEPLHGDISQS 380 (475)
Q Consensus 329 ~-----~~-~~l~~l----~~~~~--------~~~~---~lVf~~~~~~~~~l~~~L~~~-------~~~~~~h~~~~~~ 380 (475)
. .. .+...+ +..+. .|.+ .+|-.++++.+-.++..|-.. +.+.++|+.....
T Consensus 720 ~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~ 799 (1110)
T TIGR02562 720 PRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLL 799 (1110)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHH
Confidence 0 11 111111 11111 1222 366677777777777766431 3366789999777
Q ss_pred HHHHHHHHH----------------------hc----CCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhcc
Q 011901 381 QRERTLSAF----------------------RD----GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRT 434 (475)
Q Consensus 381 ~r~~~~~~f----------------------~~----g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~ 434 (475)
.|..+++.. .+ +...|+|+|++++.|+|+ +.+++|- .|.+....+|+.||+
T Consensus 800 ~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~ 876 (1110)
T TIGR02562 800 LRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRV 876 (1110)
T ss_pred HHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcc
Confidence 776665443 12 467899999999999999 6777765 455688899999999
Q ss_pred CCCCC
Q 011901 435 GRAGK 439 (475)
Q Consensus 435 gR~~~ 439 (475)
.|.+.
T Consensus 877 ~R~~~ 881 (1110)
T TIGR02562 877 NRHRL 881 (1110)
T ss_pred ccccc
Confidence 99654
No 156
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.54 E-value=2.5e-13 Score=132.22 Aligned_cols=120 Identities=13% Similarity=0.240 Sum_probs=92.9
Q ss_pred HHHHHHHHHh--ccCCcEEEEecChhhHHHHHHHHHcc-CCcccccCCCCHHHHHHHHHHHhc--CCCcEEE-ecCcccc
Q 011901 332 SIIGQLITEH--AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRD--GRFNILI-ATDVAAR 405 (475)
Q Consensus 332 ~~l~~l~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv-aT~~~~~ 405 (475)
....+.+++. ....+++|.........-+...+.+. .....+||.....+|..+++.|.. |..+|++ +-.+-++
T Consensus 732 ~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGV 811 (901)
T KOG4439|consen 732 AMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGV 811 (901)
T ss_pred HHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcc
Confidence 3334444433 34568888888777778888888764 677889999999999999999964 4455554 5577889
Q ss_pred CCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEE--Eecchh
Q 011901 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL--IYTDQQ 451 (475)
Q Consensus 406 Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~--~~~~~~ 451 (475)
|+|+-+.+|+|.+|+.|+++--.|...|+-|.|++-.+++ |.+...
T Consensus 812 GLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gT 859 (901)
T KOG4439|consen 812 GLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGT 859 (901)
T ss_pred eeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCc
Confidence 9999999999999999999999999999999998766553 444433
No 157
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=3.6e-12 Score=133.68 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=58.6
Q ss_pred CCCCcHHHHHhhhhHh----cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHH
Q 011901 119 ISKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 194 (475)
+..++|.|.+.+..+. .+.+.++.+|||+|||++.+.+++....+. +..+++++.+.|..-..|..++++
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~------~~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK------PEVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc------cccccEEEEcccchHHHHHHHHHH
Confidence 4445999998887654 578899999999999999999999876531 123679999999999999999998
Q ss_pred hh
Q 011901 195 ES 196 (475)
Q Consensus 195 ~~ 196 (475)
+.
T Consensus 82 ~~ 83 (705)
T TIGR00604 82 KL 83 (705)
T ss_pred hh
Confidence 84
No 158
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=6.2e-13 Score=136.77 Aligned_cols=117 Identities=23% Similarity=0.280 Sum_probs=92.0
Q ss_pred HHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCC-
Q 011901 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP- 410 (475)
Q Consensus 333 ~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~- 410 (475)
++..+.+.+..|.++||-|.+++.++.++..|.+ +++..+++.+....|-+-+-+.-+.| .|-|||++++||-||.
T Consensus 617 ii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkL 694 (1112)
T PRK12901 617 VIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKL 694 (1112)
T ss_pred HHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCccc
Confidence 4444555567899999999999999999999975 57777787775544544444433344 4899999999999997
Q ss_pred -------CCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchh
Q 011901 411 -------NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (475)
Q Consensus 411 -------~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~ 451 (475)
+-=+||--..+.|..--.|.+||+||-|.+|.+-.|.+-+|
T Consensus 695 g~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 695 SPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred chhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 23478888888899999999999999999999888877544
No 159
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.53 E-value=2.3e-12 Score=137.50 Aligned_cols=306 Identities=19% Similarity=0.215 Sum_probs=171.3
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHH
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (475)
+..+|+.-+|||||++.+..+-..+ +. ...+.+++|+.++.|-.|..++|..+........ ...+...-.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~-~~------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~--~~~s~~~Lk~ 344 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLL-EL------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP--KAESTSELKE 344 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHH-hc------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc--cccCHHHHHH
Confidence 4599999999999998765543322 21 4578899999999999999999998864433322 3333333334
Q ss_pred HhhcC-CcEEEEccHHHHHHHHhC-CCCCC-CccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHH
Q 011901 217 ALDYG-VDAVVGTPGRVIDLIKRN-ALNLS-EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293 (475)
Q Consensus 217 ~~~~~-~~Ilv~T~~~l~~~l~~~-~~~~~-~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 293 (475)
.+..+ ..|+|||-++|...+... ..... +-=+||+|||||.- ++.....+...+ ++...+++|+||.-.-...
T Consensus 345 ~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~-~~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 345 LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKAL-KKAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred HHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHh-ccceEEEeeCCcccccccc
Confidence 44433 589999999998887664 11122 22368999999953 444444444444 4478999999995432222
Q ss_pred -HHhhcCCCcEE-EecCC-CccccccCeeEEEEec---cC-----cc---------------------------------
Q 011901 294 -TNKYLKNPLTV-DLVGD-SDQKLADGISLYSIAT---SM-----YE--------------------------------- 329 (475)
Q Consensus 294 -~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~---~~-----~~--------------------------------- 329 (475)
....++..... .+... .+..+. ..++... .. ..
T Consensus 421 tt~~~fg~ylh~Y~i~daI~Dg~vl---~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 497 (962)
T COG0610 421 TTKDVFGDYLHTYTITDAIRDGAVL---PVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAML 497 (962)
T ss_pred chhhhhcceeEEEecchhhccCcee---eEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcc
Confidence 11122221111 11000 000000 0000000 00 00
Q ss_pred ---ch----HHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHccC--------C----------------cccccCCCC
Q 011901 330 ---KP----SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSY--------N----------------CEPLHGDIS 378 (475)
Q Consensus 330 ---~~----~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~--------~----------------~~~~h~~~~ 378 (475)
.. .+...+.+....+.++.+.|+++..+..+.+...... . ....|.. .
T Consensus 498 ~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~ 576 (962)
T COG0610 498 AVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-L 576 (962)
T ss_pred hHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-H
Confidence 00 1111112212235688888888884444443322110 0 0000111 1
Q ss_pred HHHHHHHHHHH--hcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCC--C-CCCeEEEEecchhHH
Q 011901 379 QSQRERTLSAF--RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA--G-KKGSAILIYTDQQAR 453 (475)
Q Consensus 379 ~~~r~~~~~~f--~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~--~-~~g~~~~~~~~~~~~ 453 (475)
...++.....| .+...++||.++++-.|+|.|.++.++. |-|.-.-.++|.+-|+.|. + +++..++.|..-...
T Consensus 577 ~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~gl~e~ 655 (962)
T COG0610 577 KDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRGLKEA 655 (962)
T ss_pred HHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEEe-ccccccchHHHHHHHhccCCCCCCCCcEEEECcchHHH
Confidence 22333344443 4567999999999999999999999885 5556566799999999993 4 344455555543333
Q ss_pred HHHHHHH
Q 011901 454 QVKSIER 460 (475)
Q Consensus 454 ~~~~i~~ 460 (475)
.-..+.-
T Consensus 656 l~~Al~~ 662 (962)
T COG0610 656 LKKALKL 662 (962)
T ss_pred HHHHHHH
Confidence 3333333
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.50 E-value=3.5e-12 Score=128.65 Aligned_cols=289 Identities=17% Similarity=0.189 Sum_probs=180.0
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (475)
-.++.+|+|||||.+. +..+....+ ....+++++.-++.|+.+..+.++... +.-...+...... . .
T Consensus 51 V~vVRSpMGTGKTtaL-i~wLk~~l~-------~~~~~VLvVShRrSL~~sL~~rf~~~~--l~gFv~Y~d~~~~-~--i 117 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTAL-IRWLKDALK-------NPDKSVLVVSHRRSLTKSLAERFKKAG--LSGFVNYLDSDDY-I--I 117 (824)
T ss_pred eEEEECCCCCCcHHHH-HHHHHHhcc-------CCCCeEEEEEhHHHHHHHHHHHHhhcC--CCcceeeeccccc-c--c
Confidence 3789999999999644 444444322 236679999999999999999998763 2111122211100 0 0
Q ss_pred hhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchH-------HHHHHHHhCCCCCcEEEEccCCChhH
Q 011901 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE-------DVEVILERLPQNRQSMMFSATMPPWI 290 (475)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~-------~~~~i~~~~~~~~~~i~~SAT~~~~~ 290 (475)
.....+-+++..+.|.+... -.+.++++||+||+-..++.-+.. -+..+...+.....+|+|-||+...+
T Consensus 118 ~~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~t 194 (824)
T PF02399_consen 118 DGRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQT 194 (824)
T ss_pred cccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHH
Confidence 11135777888888876542 236679999999998654432222 22223444566778999999999999
Q ss_pred HHHHHhhcCCCcEEEecCCCccc-cccCeeEE---------------------------------EEeccCccchHHHHH
Q 011901 291 RSLTNKYLKNPLTVDLVGDSDQK-LADGISLY---------------------------------SIATSMYEKPSIIGQ 336 (475)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------------------------~~~~~~~~~~~~l~~ 336 (475)
-++.....++.....+....... .......+ .......+.......
T Consensus 195 vdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~ 274 (824)
T PF02399_consen 195 VDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSE 274 (824)
T ss_pred HHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHH
Confidence 99888876554333222221100 00000000 000001234567777
Q ss_pred HHHHhccCCcEEEEecChhhHHHHHHHHHcc-CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCC--C
Q 011901 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV--D 413 (475)
Q Consensus 337 l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~--~ 413 (475)
+...+..|.++.||+.+...++.+++..... .++..++|..+.. .+ +. -++++|++.|+++..|+++... +
T Consensus 275 L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~---dv-~~--W~~~~VviYT~~itvG~Sf~~~HF~ 348 (824)
T PF02399_consen 275 LLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE---DV-ES--WKKYDVVIYTPVITVGLSFEEKHFD 348 (824)
T ss_pred HHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc---cc-cc--ccceeEEEEeceEEEEeccchhhce
Confidence 8888888999999999999999888877654 4556666655444 22 22 3678999999999999998653 3
Q ss_pred EEEEc--CCCC--ChhHHHHhhhccCCCCCCCeEEEEecc
Q 011901 414 LIIHY--ELPN--TSETFVHRTGRTGRAGKKGSAILIYTD 449 (475)
Q Consensus 414 ~vi~~--~~p~--~~~~~~Q~~GR~gR~~~~g~~~~~~~~ 449 (475)
.|+-| .... +..+..|++||+-.-. ....+++++.
T Consensus 349 ~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~ 387 (824)
T PF02399_consen 349 SMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDA 387 (824)
T ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEec
Confidence 44444 2222 4445789999996653 4555666554
No 161
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=1.1e-11 Score=117.43 Aligned_cols=338 Identities=21% Similarity=0.287 Sum_probs=214.0
Q ss_pred CCCCcHHHHHhhhhHhcCCcEEEE-cCCCCch--hHHHHHHHHHHHHhhhhhc----------------------CCCCC
Q 011901 119 ISKLFPIQKAVLEPAMQGRDMIGR-ARTGTGK--TLAFGIPILDKIIKFNEKH----------------------GRGRN 173 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~-~~tGsGK--T~~~~~~~l~~l~~~~~~~----------------------~~~~~ 173 (475)
-..+|+.|.+.+..+...+|++.. +..+.|+ +-+|++.+++++++.+... ..-..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 356999999999999998887653 3334555 5678999999998743311 12356
Q ss_pred CeEEEEcCCHHHHHHHHHHHHhhCCCCce---EE--------EEcC----------------------cc--------hh
Q 011901 174 PLCLVLAPTRELAKQVEKEFHESAPSLDT---IC--------VYGG----------------------TP--------IS 212 (475)
Q Consensus 174 ~~~lil~Pt~~La~q~~~~~~~~~~~~~~---~~--------~~~~----------------------~~--------~~ 212 (475)
|+|||+||+++-|..+.+.+..++.+..- .+ -++| +. ..
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 89999999999999999888776322110 00 0111 00 00
Q ss_pred HHHHHh---hcCCcEEEEccHHHHHHHHhCC------CCCCCccEEEEecccccccCCchHHHHHHHHhC---CCC----
Q 011901 213 HQMRAL---DYGVDAVVGTPGRVIDLIKRNA------LNLSEVQFVVLDEADQMLSVGFAEDVEVILERL---PQN---- 276 (475)
Q Consensus 213 ~~~~~~---~~~~~Ilv~T~~~l~~~l~~~~------~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~---~~~---- 276 (475)
.+...+ .+..||+||+|=.|..++.... -.++.+.++|||-+|.|+... -..+..++..+ |..
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccCC
Confidence 001111 1468999999999988886422 236788999999999875432 23344444433 221
Q ss_pred -----------------CcEEEEccCCChhHHHHHHhhcCCCcEEE----ecCC-----CccccccCeeEEEEec---cC
Q 011901 277 -----------------RQSMMFSATMPPWIRSLTNKYLKNPLTVD----LVGD-----SDQKLADGISLYSIAT---SM 327 (475)
Q Consensus 277 -----------------~~~i~~SAT~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~---~~ 327 (475)
+|.+++|+--.+....+...++.+-..-. +... ....+...+....... ..
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 47788888888888777777654422111 0000 0111111111111111 11
Q ss_pred ccchHHH-HHHHHHhcc--CCcEEEEecChhhHHHHHHHHHcc-CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCcc
Q 011901 328 YEKPSII-GQLITEHAK--GGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (475)
Q Consensus 328 ~~~~~~l-~~l~~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 403 (475)
..+...+ ..++-+..+ ...++||.|+.-.--++..++++. +....+|.-.+.+.-.++.+-|..|...||+.|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 1122211 112222211 246899999999999999999764 666677777777777888899999999999999865
Q ss_pred c--cCCCCCCCCEEEEcCCCCChhHHHH---hhhccCCCC----CCCeEEEEecchhHHHHHH
Q 011901 404 A--RGLDVPNVDLIIHYELPNTSETFVH---RTGRTGRAG----KKGSAILIYTDQQARQVKS 457 (475)
Q Consensus 404 ~--~Gidi~~~~~vi~~~~p~~~~~~~Q---~~GR~gR~~----~~g~~~~~~~~~~~~~~~~ 457 (475)
. +-.++.+++.||.|.+|.++..|.. +.+|+.-.| ....|.++|+.-|.-.++.
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ 675 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLEN 675 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHH
Confidence 4 7789999999999999999877754 445553222 2356889999877654443
No 162
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.42 E-value=8.6e-13 Score=105.46 Aligned_cols=135 Identities=20% Similarity=0.146 Sum_probs=81.7
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (475)
|+-.++...+|+|||.-.+.-++....+ .+.++|+|.||+.++..+.+.++.. .+..-..-..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~--------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~----- 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK--------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARM----- 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS-----
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH--------ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeee-----
Confidence 4446889999999998776666654443 3778999999999999999888654 2221111110
Q ss_pred HHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhC--CCCCcEEEEccCCChhH
Q 011901 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--PQNRQSMMFSATMPPWI 290 (475)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~--~~~~~~i~~SAT~~~~~ 290 (475)
.....+.-|-++|+..+.+.+.+ .....+++++|+||+|.....+ -.....+..+ .....+|+||||||...
T Consensus 67 ~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~s--IA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 67 RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTS--IAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHH--HHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHH--HhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 12234567889999999888766 5557899999999999743321 1111122222 12357999999998743
No 163
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.36 E-value=3.4e-11 Score=131.21 Aligned_cols=317 Identities=19% Similarity=0.220 Sum_probs=202.3
Q ss_pred CCCcHHHHHhhhhHhc-----CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHH
Q 011901 120 SKLFPIQKAVLEPAMQ-----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~-----~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 194 (475)
..++++|.+.++.+.. +.+.++..++|.|||+..+..+.. +..... ...+.++++||+ ++..+|.+++.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~~----~~~~~~liv~p~-s~~~nw~~e~~ 410 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESIK----VYLGPALIVVPA-SLLSNWKREFE 410 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhccc----CCCCCeEEEecH-HHHHHHHHHHh
Confidence 4688999999987552 567899999999999766444433 222111 113568999995 55577999999
Q ss_pred hhCCCCc-eEEEEcCcch----hHHHHHhhc-C----CcEEEEccHHHHHHH-HhCCCCCCCccEEEEecccccccCCch
Q 011901 195 ESAPSLD-TICVYGGTPI----SHQMRALDY-G----VDAVVGTPGRVIDLI-KRNALNLSEVQFVVLDEADQMLSVGFA 263 (475)
Q Consensus 195 ~~~~~~~-~~~~~~~~~~----~~~~~~~~~-~----~~Ilv~T~~~l~~~l-~~~~~~~~~~~~vViDE~H~~~~~~~~ 263 (475)
++.+.+. +....|.... ......... . .+++++|++.+.... ....+.-..+..+|+||+|++.+. -.
T Consensus 411 k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~-~s 489 (866)
T COG0553 411 KFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND-QS 489 (866)
T ss_pred hhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh-hh
Confidence 9988888 6666665541 222222222 1 799999999988732 122233456788999999997765 23
Q ss_pred HHHHHHHHhCCCCCcEEEEccCCChh-HHH---HHH-hh---------------cCCCcEE-------------------
Q 011901 264 EDVEVILERLPQNRQSMMFSATMPPW-IRS---LTN-KY---------------LKNPLTV------------------- 304 (475)
Q Consensus 264 ~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~---~~~-~~---------------~~~~~~~------------------- 304 (475)
.....+. .+... ..+.+|+||..+ +.. +.. .. +..+...
T Consensus 490 ~~~~~l~-~~~~~-~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 490 SEGKALQ-FLKAL-NRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred HHHHHHH-HHhhc-ceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 3333333 33222 236667776211 000 000 00 0000000
Q ss_pred ------------E--ecCC----------------------------------------Cc----------ccccc----
Q 011901 305 ------------D--LVGD----------------------------------------SD----------QKLAD---- 316 (475)
Q Consensus 305 ------------~--~~~~----------------------------------------~~----------~~~~~---- 316 (475)
. +... .. .....
T Consensus 568 ~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTR 647 (866)
T ss_pred HHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence 0 0000 00 00000
Q ss_pred --CeeEEEEecc-----------------------------Cc-cchHHHHHHH-H-HhccCC--cEEEEecChhhHHHH
Q 011901 317 --GISLYSIATS-----------------------------MY-EKPSIIGQLI-T-EHAKGG--KCIVFTQTKRDADRL 360 (475)
Q Consensus 317 --~~~~~~~~~~-----------------------------~~-~~~~~l~~l~-~-~~~~~~--~~lVf~~~~~~~~~l 360 (475)
.+........ .. .|...+..++ . ....+. ++++|++.....+.+
T Consensus 648 lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 648 LRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred HHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 0000000000 00 4555666666 2 344566 899999999999999
Q ss_pred HHHHHcc-CCcccccCCCCHHHHHHHHHHHhcC--CCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCC
Q 011901 361 AHAMAKS-YNCEPLHGDISQSQRERTLSAFRDG--RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437 (475)
Q Consensus 361 ~~~L~~~-~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~ 437 (475)
...+... +....++|+++.+.|...++.|.++ ...+++++.+.+.|+|...+++||++|+.|+++...|...|+.|.
T Consensus 728 ~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri 807 (866)
T COG0553 728 EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807 (866)
T ss_pred HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHh
Confidence 9999765 5788999999999999999999986 455666777999999999999999999999999999999999998
Q ss_pred CCCCeEEE
Q 011901 438 GKKGSAIL 445 (475)
Q Consensus 438 ~~~g~~~~ 445 (475)
|++..+.+
T Consensus 808 gQ~~~v~v 815 (866)
T COG0553 808 GQKRPVKV 815 (866)
T ss_pred cCcceeEE
Confidence 87765443
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.35 E-value=8.8e-12 Score=118.11 Aligned_cols=151 Identities=19% Similarity=0.131 Sum_probs=91.5
Q ss_pred HHHHhhhhHh-------------cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHH
Q 011901 125 IQKAVLEPAM-------------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (475)
Q Consensus 125 ~Q~~~i~~i~-------------~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (475)
||.+++..++ ..+.+++..++|+|||..++..+. .+.+.... .....+||+||. .+..||.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~---~~~~~~LIv~P~-~l~~~W~~ 75 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQ---RGEKKTLIVVPS-SLLSQWKE 75 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTT---SS-S-EEEEE-T-TTHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhcccc---ccccceeEeecc-chhhhhhh
Confidence 5777776653 225689999999999987754443 43331111 111249999999 88899999
Q ss_pred HHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHH--------HHHHhCCCCCCCccEEEEecccccccCC
Q 011901 192 EFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI--------DLIKRNALNLSEVQFVVLDEADQMLSVG 261 (475)
Q Consensus 192 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~--------~~l~~~~~~~~~~~~vViDE~H~~~~~~ 261 (475)
++.+++. .+++....+...............+++|+|++.+. ..+.. .++++||+||+|.+.+.
T Consensus 76 E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-----~~~~~vIvDEaH~~k~~- 149 (299)
T PF00176_consen 76 EIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ-----IKWDRVIVDEAHRLKNK- 149 (299)
T ss_dssp HHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT-----SEEEEEEETTGGGGTTT-
T ss_pred hhccccccccccccccccccccccccccccccceeeecccccccccccccccccccc-----ccceeEEEecccccccc-
Confidence 9999984 45444444443122222233355899999999998 22222 34889999999998654
Q ss_pred chHHHHHHHHhCCCCCcEEEEccCCCh
Q 011901 262 FAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 262 ~~~~~~~i~~~~~~~~~~i~~SAT~~~ 288 (475)
.......+..+. ....+++||||..
T Consensus 150 -~s~~~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 150 -DSKRYKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp -TSHHHHHHHCCC-ECEEEEE-SS-SS
T ss_pred -cccccccccccc-cceEEeecccccc
Confidence 333344444565 6678999999854
No 165
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.27 E-value=1.7e-10 Score=116.08 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=92.0
Q ss_pred HHHHHHHHHh-ccCCcEEEEecChhhHHHHHHHHHc-----------------------cCCcccccCCCCHHHHHHHHH
Q 011901 332 SIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAK-----------------------SYNCEPLHGDISQSQRERTLS 387 (475)
Q Consensus 332 ~~l~~l~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-----------------------~~~~~~~h~~~~~~~r~~~~~ 387 (475)
-+|..+++.. .-|.++|||..+....+.+..+|.. +....-+.|.....+|+...+
T Consensus 1129 iLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~ 1208 (1567)
T KOG1015|consen 1129 ILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAE 1208 (1567)
T ss_pred ehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHH
Confidence 3444444433 2378999999999999988888842 112345788899999999999
Q ss_pred HHhcC----CCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEE
Q 011901 388 AFRDG----RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446 (475)
Q Consensus 388 ~f~~g----~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~ 446 (475)
.|.+- -...||+|-+.+.|+|+-.++-||++|..|+++.-.|-+=||-|.|+.--||++
T Consensus 1209 ~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1209 EFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99763 235899999999999999999999999999999999999999999976555543
No 166
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.20 E-value=1e-08 Score=107.00 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=54.1
Q ss_pred CCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCC--CCCCe--------EEEEecchhHHHHHHHHHHh
Q 011901 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA--GKKGS--------AILIYTDQQARQVKSIERDV 462 (475)
Q Consensus 393 ~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~--~~~g~--------~~~~~~~~~~~~~~~i~~~~ 462 (475)
..+.+++.+++.+|+|.|++-.+.-+....|...-.|.+||+.|. ++.|. -.++.+.+..+....|++.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 678999999999999999999999999888888899999999994 22222 22344555566666666655
No 167
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.19 E-value=5.2e-10 Score=113.95 Aligned_cols=313 Identities=19% Similarity=0.217 Sum_probs=181.1
Q ss_pred CCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC--
Q 011901 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~-- 198 (475)
.++|+-.+.+-.+.-...-+.-+-||=|||+++.+|+.-..+. |..+.++....-||.--.++...++.
T Consensus 78 g~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---------gkgVhvVTvNdYLA~RDae~m~~l~~~L 148 (822)
T COG0653 78 GMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---------GKGVHVVTVNDYLARRDAEWMGPLYEFL 148 (822)
T ss_pred CCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---------CCCcEEeeehHHhhhhCHHHHHHHHHHc
Confidence 3555555566666666678999999999999999987544333 55588888889999777776666554
Q ss_pred CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHH-HHHHHhC------CCCCCCccEEEEecccccccC-----------
Q 011901 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQMLSV----------- 260 (475)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~~~~~~vViDE~H~~~~~----------- 260 (475)
++.+.+...+.....+. ....+||..+|...| ++.+..+ ......+.+.|+||++.++=.
T Consensus 149 GlsvG~~~~~m~~~ek~--~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~ 226 (822)
T COG0653 149 GLSVGVILAGMSPEEKR--AAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGP 226 (822)
T ss_pred CCceeeccCCCChHHHH--HHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecc
Confidence 55666666666544443 345589999998766 2222211 112446888999999975311
Q ss_pred -----CchHHHHHHHHhCCCCC----------------------------------------------------------
Q 011901 261 -----GFAEDVEVILERLPQNR---------------------------------------------------------- 277 (475)
Q Consensus 261 -----~~~~~~~~i~~~~~~~~---------------------------------------------------------- 277 (475)
.....+..+...+....
T Consensus 227 ~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dY 306 (822)
T COG0653 227 AEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDY 306 (822)
T ss_pred cccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCee
Confidence 01222233332221110
Q ss_pred -----------------------------------------------------------cEEEEccCCChhHHHHHHhhc
Q 011901 278 -----------------------------------------------------------QSMMFSATMPPWIRSLTNKYL 298 (475)
Q Consensus 278 -----------------------------------------------------------~~i~~SAT~~~~~~~~~~~~~ 298 (475)
.+.+||+|.......+...|.
T Consensus 307 IVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~ 386 (822)
T COG0653 307 IVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYG 386 (822)
T ss_pred EEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccC
Confidence 111222222222222222221
Q ss_pred CCCcEEEecCCCccccccCeeEE-EEeccCccch-HHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccC
Q 011901 299 KNPLTVDLVGDSDQKLADGISLY-SIATSMYEKP-SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHG 375 (475)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~ 375 (475)
.+-..+- . . +........ .+.....+|. ..+..+...+..|.++||-+.+++.++.+.+.|.+ +++...+..
T Consensus 387 l~vv~iP---T-n-rp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNA 461 (822)
T COG0653 387 LDVVVIP---T-N-RPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNA 461 (822)
T ss_pred Cceeecc---C-C-CcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeecc
Confidence 1111110 0 0 000000000 0011111222 34555666778899999999999999999999974 466666666
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCE-----------EEEcCCCCChhHHHHhhhccCCCCCCCeEE
Q 011901 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL-----------IIHYELPNTSETFVHRTGRTGRAGKKGSAI 444 (475)
Q Consensus 376 ~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~-----------vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~ 444 (475)
+....+-+.+...-..| -|-|||+++++|-||.--.. ||--....|..--.|.+||+||.|-+|...
T Consensus 462 k~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~ 539 (822)
T COG0653 462 KNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSR 539 (822)
T ss_pred ccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhh
Confidence 65544444333333333 47899999999999974332 333333334444459999999999999877
Q ss_pred EEecchh
Q 011901 445 LIYTDQQ 451 (475)
Q Consensus 445 ~~~~~~~ 451 (475)
.+++-+|
T Consensus 540 F~lSleD 546 (822)
T COG0653 540 FYLSLED 546 (822)
T ss_pred hhhhhHH
Confidence 7776543
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.17 E-value=3.9e-10 Score=105.01 Aligned_cols=75 Identities=25% Similarity=0.238 Sum_probs=58.1
Q ss_pred CCCCcHHHHHhhh----hHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHH
Q 011901 119 ISKLFPIQKAVLE----PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 119 ~~~l~~~Q~~~i~----~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 194 (475)
+++++|.|.+.+. .+..+.++++.+|||+|||++++.|++..+....... .+.+++|.++|..+..|...+++
T Consensus 6 Py~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~---~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 6 PYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI---QKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc---cccceeEEeccHHHHHHHHHHHH
Confidence 4568999999555 4556789999999999999999999987765422110 23479999999999999877776
Q ss_pred hh
Q 011901 195 ES 196 (475)
Q Consensus 195 ~~ 196 (475)
+.
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 54
No 169
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.17 E-value=3.9e-10 Score=105.01 Aligned_cols=75 Identities=25% Similarity=0.238 Sum_probs=58.1
Q ss_pred CCCCcHHHHHhhh----hHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHH
Q 011901 119 ISKLFPIQKAVLE----PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 119 ~~~l~~~Q~~~i~----~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 194 (475)
+++++|.|.+.+. .+..+.++++.+|||+|||++++.|++..+....... .+.+++|.++|..+..|...+++
T Consensus 6 Py~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~---~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 6 PYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI---QKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc---cccceeEEeccHHHHHHHHHHHH
Confidence 4568999999555 4556789999999999999999999987765422110 23479999999999999877776
Q ss_pred hh
Q 011901 195 ES 196 (475)
Q Consensus 195 ~~ 196 (475)
+.
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 54
No 170
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.10 E-value=1.1e-09 Score=109.92 Aligned_cols=310 Identities=18% Similarity=0.261 Sum_probs=183.9
Q ss_pred HHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC-CCCceEEE
Q 011901 127 KAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICV 205 (475)
Q Consensus 127 ~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~-~~~~~~~~ 205 (475)
...+..+..+.-+++.+.||+|||.-+.--+|..+..... +.-.-+.+..|++..+..+++++..-- ....-++.
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~----g~~~na~v~qprrisaisiaerva~er~e~~g~tvg 459 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN----GASFNAVVSQPRRISAISLAERVANERGEEVGETCG 459 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc----cccccceeccccccchHHHHHHHHHhhHHhhccccc
Confidence 4455556666679999999999999888888887765211 112347788899988888877765431 11111222
Q ss_pred EcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhC---CCCCcEEEE
Q 011901 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL---PQNRQSMMF 282 (475)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~---~~~~~~i~~ 282 (475)
+.-...+. .-...-.|.++|-+-+++.+... +..+.++++||.|...-. ++-+..+++.+ .+...+++|
T Consensus 460 y~vRf~Sa---~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~--~dfll~~lr~m~~ty~dl~v~lm 531 (1282)
T KOG0921|consen 460 YNVRFDSA---TPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVD--TDFVLIVLREMISTYRDLRVVLM 531 (1282)
T ss_pred cccccccc---ccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccc--hHHHHHHHHhhhccchhhhhhhh
Confidence 21111110 00111478999999999888764 456778999999964332 23333333333 345566777
Q ss_pred ccCCChhHH--------------------HHHHhhcCCCcEEE--------e--cCCCcccccc-CeeEEEEecc-----
Q 011901 283 SATMPPWIR--------------------SLTNKYLKNPLTVD--------L--VGDSDQKLAD-GISLYSIATS----- 326 (475)
Q Consensus 283 SAT~~~~~~--------------------~~~~~~~~~~~~~~--------~--~~~~~~~~~~-~~~~~~~~~~----- 326 (475)
|||+..+.. .+....+..+.... . ..+......+ ....+....+
T Consensus 532 satIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~ 611 (1282)
T KOG0921|consen 532 SATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNE 611 (1282)
T ss_pred hcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcc
Confidence 777654321 11111111100000 0 0000000000 0000000000
Q ss_pred --------Ccc---chHHHHHHHHHhc---cCCcEEEEecChhhHHHHHHHHHc--------cCCcccccCCCCHHHHHH
Q 011901 327 --------MYE---KPSIIGQLITEHA---KGGKCIVFTQTKRDADRLAHAMAK--------SYNCEPLHGDISQSQRER 384 (475)
Q Consensus 327 --------~~~---~~~~l~~l~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~--------~~~~~~~h~~~~~~~r~~ 384 (475)
..+ -..+++.++.... -.+-+++|.+.....-.+...+.. .+.+...|+.....+..+
T Consensus 612 ~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrk 691 (1282)
T KOG0921|consen 612 STRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRK 691 (1282)
T ss_pred hhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhh
Confidence 000 1122233322221 135789999999888888777643 367788899999999999
Q ss_pred HHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCC------------------CCChhHHHHhhhccCCCCCCCeEEEE
Q 011901 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL------------------PNTSETFVHRTGRTGRAGKKGSAILI 446 (475)
Q Consensus 385 ~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~------------------p~~~~~~~Q~~GR~gR~~~~g~~~~~ 446 (475)
+.+.-..|..++++.|.+++..+.+.++..|++.+. ..+.....|+.||+||. ++|.|..+
T Consensus 692 vf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~l 770 (1282)
T KOG0921|consen 692 VFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHL 770 (1282)
T ss_pred ccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccc
Confidence 999999999999999999999998888777764432 12556678999999997 57888887
Q ss_pred ecc
Q 011901 447 YTD 449 (475)
Q Consensus 447 ~~~ 449 (475)
.+.
T Consensus 771 cs~ 773 (1282)
T KOG0921|consen 771 CSR 773 (1282)
T ss_pred cHH
Confidence 765
No 171
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.83 E-value=4.9e-07 Score=89.93 Aligned_cols=105 Identities=18% Similarity=0.281 Sum_probs=87.8
Q ss_pred CCcEEEEecChhhHHHHHHHHHcc-CC------------------cccccCCCCHHHHHHHHHHHhcC---CCcEEEecC
Q 011901 344 GGKCIVFTQTKRDADRLAHAMAKS-YN------------------CEPLHGDISQSQRERTLSAFRDG---RFNILIATD 401 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~-~~------------------~~~~h~~~~~~~r~~~~~~f~~g---~~~vlvaT~ 401 (475)
|.++|||.......+.+.+.|.+. .+ ..-+.|..+..+|++.++.|.+- ..-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 568999999999999988888651 11 22467888889999999999763 245788899
Q ss_pred ccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEec
Q 011901 402 VAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448 (475)
Q Consensus 402 ~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~ 448 (475)
....|||+-.++-+|++++.|++..-.|.+.|+-|.|++.-|+++--
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 99999999999999999999999999999999999999888877544
No 172
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.79 E-value=5.2e-07 Score=91.11 Aligned_cols=72 Identities=17% Similarity=0.300 Sum_probs=57.9
Q ss_pred CCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCC--CCCCeE-----------EEEecchhHHHHHHH
Q 011901 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA--GKKGSA-----------ILIYTDQQARQVKSI 458 (475)
Q Consensus 392 g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~--~~~g~~-----------~~~~~~~~~~~~~~i 458 (475)
...+.+.+..++-+|||-|+|-.++-+....|...=+|.+||+-|. ++.|.- .++...+....++.|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999993 344443 345666777777777
Q ss_pred HHHhC
Q 011901 459 ERDVG 463 (475)
Q Consensus 459 ~~~~~ 463 (475)
++..+
T Consensus 562 qkEI~ 566 (985)
T COG3587 562 QKEIN 566 (985)
T ss_pred HHHHH
Confidence 77653
No 173
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.74 E-value=1.3e-05 Score=79.48 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=67.3
Q ss_pred CCcEEEEecChhhHHHHHHHHHcc--------CCcccccCCCCHHHHHHHHHHHh----cCCCcEEEec--CccccCCCC
Q 011901 344 GGKCIVFTQTKRDADRLAHAMAKS--------YNCEPLHGDISQSQRERTLSAFR----DGRFNILIAT--DVAARGLDV 409 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~--------~~~~~~h~~~~~~~r~~~~~~f~----~g~~~vlvaT--~~~~~Gidi 409 (475)
.+.+++|+|+.+....+.+...+. .+-..+-...+ -+.+++.+. .|.-.+|+|. .-+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 368999999999888887777532 11111222222 344555553 3554566665 688999999
Q ss_pred CC--CCEEEEcCCCCC-hhH-------------------------------HHHhhhccCCCCCCCeEEEEecc
Q 011901 410 PN--VDLIIHYELPNT-SET-------------------------------FVHRTGRTGRAGKKGSAILIYTD 449 (475)
Q Consensus 410 ~~--~~~vi~~~~p~~-~~~-------------------------------~~Q~~GR~gR~~~~g~~~~~~~~ 449 (475)
.+ .++||.++.|.. ..+ .-|-+|||-|.-++-.++++++.
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 87 788998888752 111 24999999998666556666554
No 174
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.72 E-value=1.3e-07 Score=85.64 Aligned_cols=126 Identities=21% Similarity=0.237 Sum_probs=87.8
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC-
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~- 198 (475)
..|++.|.-++=.+..| .+++..||=|||++..+++.-..+. |..|=|++.+..||..=++++..++.
T Consensus 76 ~~p~~vQll~~l~L~~G--~laEm~TGEGKTli~~l~a~~~AL~---------G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKG--RLAEMKTGEGKTLIAALPAALNALQ---------GKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp ----HHHHHHHHHHHTT--SEEEESTTSHHHHHHHHHHHHHHTT---------SS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhhhhhcccc--eeEEecCCCCcHHHHHHHHHHHHHh---------cCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 35888887777666554 4999999999999988887665543 77799999999999887777766553
Q ss_pred -CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHH-HHHhCC------CCCCCccEEEEecccccc
Q 011901 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID-LIKRNA------LNLSEVQFVVLDEADQML 258 (475)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~-~l~~~~------~~~~~~~~vViDE~H~~~ 258 (475)
++++.....+.+...+.... .++|+.+|...|.- .+.... .....+.++||||+|.++
T Consensus 145 LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp TT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 67777777777654443333 46899999998853 343321 124678999999999764
No 175
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.64 E-value=1.9e-07 Score=84.91 Aligned_cols=74 Identities=19% Similarity=0.354 Sum_probs=51.3
Q ss_pred CCcHHHHHhhhhHhcCCc-EEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHh
Q 011901 121 KLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~-~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 195 (475)
+|.+.|.+|+..++.... .+++||+|||||.+.. .++..+...........+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999888 9999999999996443 3444442100001124577899999999999999999888
No 176
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.63 E-value=2.8e-07 Score=80.17 Aligned_cols=147 Identities=16% Similarity=0.208 Sum_probs=74.6
Q ss_pred CCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHH-------HH
Q 011901 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV-------EK 191 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~-------~~ 191 (475)
+...+..|..+++.++...-+++.||.|||||+.++..++..+.+ +.-.+++++-|..+..+.. .+
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-------g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-------GEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-------TS-SEEEEEE-S--TT----SS------
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-------CCCcEEEEEecCCCCccccccCCCCHHH
Confidence 345788999999999977789999999999999998888888765 3345688888876542211 00
Q ss_pred HHHhhCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHH
Q 011901 192 EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271 (475)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~ 271 (475)
.+.-+..++.-. ....-.......+.....|-+.++..+. + ..++ -.+||+|||+.+ -..++..++.
T Consensus 75 K~~p~~~p~~d~--l~~~~~~~~~~~~~~~~~Ie~~~~~~iR-----G-rt~~-~~~iIvDEaQN~----t~~~~k~ilT 141 (205)
T PF02562_consen 75 KMEPYLRPIYDA--LEELFGKEKLEELIQNGKIEIEPLAFIR-----G-RTFD-NAFIIVDEAQNL----TPEELKMILT 141 (205)
T ss_dssp ---TTTHHHHHH--HTTTS-TTCHHHHHHTTSEEEEEGGGGT-----T---B--SEEEEE-SGGG------HHHHHHHHT
T ss_pred HHHHHHHHHHHH--HHHHhChHhHHHHhhcCeEEEEehhhhc-----C-cccc-ceEEEEecccCC----CHHHHHHHHc
Confidence 000000000000 0000000111112223345555533221 1 1122 378999999987 5678899999
Q ss_pred hCCCCCcEEEEccC
Q 011901 272 RLPQNRQSMMFSAT 285 (475)
Q Consensus 272 ~~~~~~~~i~~SAT 285 (475)
++..+++++++.-.
T Consensus 142 R~g~~skii~~GD~ 155 (205)
T PF02562_consen 142 RIGEGSKIIITGDP 155 (205)
T ss_dssp TB-TT-EEEEEE--
T ss_pred ccCCCcEEEEecCc
Confidence 99988888876543
No 177
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.63 E-value=1.2e-08 Score=104.61 Aligned_cols=254 Identities=19% Similarity=0.233 Sum_probs=149.0
Q ss_pred HHHHHhhhhHh-cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC--CCC
Q 011901 124 PIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSL 200 (475)
Q Consensus 124 ~~Q~~~i~~i~-~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~--~~~ 200 (475)
|.|.+.+-... .+.++++.+|||+|||.+|-++++..+.. ..+.++++++|.++|...-.+.+.+.. +++
T Consensus 930 ~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~-------~p~~kvvyIap~kalvker~~Dw~~r~~~~g~ 1002 (1230)
T KOG0952|consen 930 PIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY-------YPGSKVVYIAPDKALVKERSDDWSKRDELPGI 1002 (1230)
T ss_pred CccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc-------CCCccEEEEcCCchhhcccccchhhhcccCCc
Confidence 34444443322 23578999999999999999988877654 345779999999999988777766543 356
Q ss_pred ceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCC--CCCCCccEEEEecccccccCCchHHHHHHHHhCC----
Q 011901 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP---- 274 (475)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~--~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~---- 274 (475)
+++-+.|...... ... ...+++|+||+++......+. ..+.+++++|+||.|.+.+. .++.++.+..+.+
T Consensus 1003 k~ie~tgd~~pd~--~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s~ 1078 (1230)
T KOG0952|consen 1003 KVIELTGDVTPDV--KAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYISS 1078 (1230)
T ss_pred eeEeccCccCCCh--hhe-ecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCcc
Confidence 6666676665442 122 237999999999988777433 35788999999999976554 4554444433332
Q ss_pred ---CCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCcccc-----ccCeeEEEEeccCccchHHHHHHHHHhccCCc
Q 011901 275 ---QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL-----ADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346 (475)
Q Consensus 275 ---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 346 (475)
+..+.+++|--+. +..+++... +....... .....++ ...+.-......+........+.++...+..+
T Consensus 1079 ~t~~~vr~~glsta~~-na~dla~wl-~~~~~~nf-~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p 1155 (1230)
T KOG0952|consen 1079 QTEEPVRYLGLSTALA-NANDLADWL-NIKDMYNF-RPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKP 1155 (1230)
T ss_pred ccCcchhhhhHhhhhh-ccHHHHHHh-CCCCcCCC-CcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCc
Confidence 2334555553332 223333332 22111110 0011111 11111111112222233445566777888899
Q ss_pred EEEEecChhhHHHHHHHHHc-----cCCcccccCCCCHHHHHHHHHHHhcCC
Q 011901 347 CIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGR 393 (475)
Q Consensus 347 ~lVf~~~~~~~~~l~~~L~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~ 393 (475)
++||+.+.++....+..|-. ..+...++.+ ..+-+.++...++..
T Consensus 1156 ~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~ 1205 (1230)
T KOG0952|consen 1156 VLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTN 1205 (1230)
T ss_pred eEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccc
Confidence 99999999887766655532 1223334333 555566666655544
No 178
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.62 E-value=2.7e-06 Score=89.14 Aligned_cols=68 Identities=7% Similarity=-0.031 Sum_probs=60.2
Q ss_pred CCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCCCh
Q 011901 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 221 ~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 288 (475)
...|++.||..|...+..+.+++..+..+|+||||+..+......+..+++.-++..-+.+|||.|..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 35899999999999999999999999999999999998876677777888888888889999999864
No 179
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.61 E-value=7.8e-07 Score=80.87 Aligned_cols=168 Identities=16% Similarity=0.177 Sum_probs=107.6
Q ss_pred CCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhc----------CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCC
Q 011901 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQ----------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (475)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~----------~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~ 172 (475)
.+.|++.+.+ .| .|+..|.+++-.+.. ...+++-..||.||-....-.++....+ .
T Consensus 25 ~~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------G 90 (303)
T PF13872_consen 25 RLHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------G 90 (303)
T ss_pred ccCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc--------C
Confidence 3456665433 33 478899888865542 2458888899999998776666666554 1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCC-CceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCC-----------
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPS-LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA----------- 240 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~----------- 240 (475)
..+++++..+..|-....+.++..... +.+..+.. .+.. ........|+++|+..|...-..+.
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~-~~~~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLNK-FKYG---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCCcccceechh-hccC---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 345899999999999999999987642 22222211 1111 0112235799999999876643211
Q ss_pred -CCCCCccEEEEecccccccCCc--------hHHHHHHHHhCCCCCcEEEEccCCChh
Q 011901 241 -LNLSEVQFVVLDEADQMLSVGF--------AEDVEVILERLPQNRQSMMFSATMPPW 289 (475)
Q Consensus 241 -~~~~~~~~vViDE~H~~~~~~~--------~~~~~~i~~~~~~~~~~i~~SAT~~~~ 289 (475)
..-+.-++||+||||...+... +..+..+.+++| +.+++.+|||-..+
T Consensus 167 W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgase 223 (303)
T PF13872_consen 167 WCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASE 223 (303)
T ss_pred HHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCC
Confidence 0112234899999999877632 234445566675 45599999997663
No 180
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.57 E-value=4.1e-07 Score=79.86 Aligned_cols=123 Identities=16% Similarity=0.224 Sum_probs=73.4
Q ss_pred CCcHHHHHhhhhHhcCC--cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC
Q 011901 121 KLFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~--~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 198 (475)
+|++-|.+++..++... -.+++|+.|+|||.+. ..+...+.. .+.++++++||...+....+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~--------~g~~v~~~apT~~Aa~~L~~~~~---- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA--------AGKRVIGLAPTNKAAKELREKTG---- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH--------TT--EEEEESSHHHHHHHHHHHT----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh--------CCCeEEEECCcHHHHHHHHHhhC----
Confidence 47899999999997543 3788999999999743 344444433 35779999999998887666531
Q ss_pred CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCC----CCCCCccEEEEecccccccCCchHHHHHHHHhCC
Q 011901 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA----LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (475)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~----~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~ 274 (475)
... .|-..++....... ..+...+++||||+-.+ -...+..++...+
T Consensus 68 -~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv----~~~~~~~ll~~~~ 118 (196)
T PF13604_consen 68 -IEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMV----DSRQLARLLRLAK 118 (196)
T ss_dssp -S-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-----BHHHHHHHHHHS-
T ss_pred -cch------------------------hhHHHHHhcCCcccccccccCCcccEEEEeccccc----CHHHHHHHHHHHH
Confidence 111 12111111111100 01456679999999986 4567778888887
Q ss_pred C-CCcEEEEccC
Q 011901 275 Q-NRQSMMFSAT 285 (475)
Q Consensus 275 ~-~~~~i~~SAT 285 (475)
. +.+++++.-+
T Consensus 119 ~~~~klilvGD~ 130 (196)
T PF13604_consen 119 KSGAKLILVGDP 130 (196)
T ss_dssp T-T-EEEEEE-T
T ss_pred hcCCEEEEECCc
Confidence 6 5566665543
No 181
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.44 E-value=5.4e-06 Score=81.61 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=64.1
Q ss_pred HHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHH
Q 011901 115 ARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 115 ~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 194 (475)
...+..+|...|..|+.+++...-.|++||+|+|||.+.. .+..++.+ .....+|+++|+..-+.|.++.+.
T Consensus 404 s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~-------~~~~~VLvcApSNiAVDqLaeKIh 475 (935)
T KOG1802|consen 404 SVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR-------QHAGPVLVCAPSNIAVDQLAEKIH 475 (935)
T ss_pred cCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHH-------hcCCceEEEcccchhHHHHHHHHH
Confidence 3446667889999999999998889999999999997764 44445544 235669999999999999999887
Q ss_pred hhCCCCceEEEE
Q 011901 195 ESAPSLDTICVY 206 (475)
Q Consensus 195 ~~~~~~~~~~~~ 206 (475)
+- +++++.+.
T Consensus 476 ~t--gLKVvRl~ 485 (935)
T KOG1802|consen 476 KT--GLKVVRLC 485 (935)
T ss_pred hc--CceEeeee
Confidence 76 35555443
No 182
>PRK10536 hypothetical protein; Provisional
Probab=98.38 E-value=1.6e-05 Score=71.22 Aligned_cols=145 Identities=17% Similarity=0.180 Sum_probs=83.0
Q ss_pred HcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHH------
Q 011901 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV------ 189 (475)
Q Consensus 116 ~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~------ 189 (475)
-.++...+..|...+..+..+..+++.|++|||||+.+...++..+.+ +.-.++++.-|+....+..
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~-------~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH-------KDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred CccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCeeEEEEeCCCCCchhhhCcCCCC
Confidence 346677889999999999888889999999999999887777766543 1123355555654332211
Q ss_pred -HHHHHhhCC----CCceEEEEcCcchhHHHHHhh-cCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCch
Q 011901 190 -EKEFHESAP----SLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (475)
Q Consensus 190 -~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~ 263 (475)
.+.+..+.. .+.. +.+.. .....+. ..-.|-|.... ++.... + +-++||+||++.+ -.
T Consensus 127 ~~eK~~p~~~pi~D~L~~--~~~~~---~~~~~~~~~~~~Iei~~l~----ymRGrt--l-~~~~vIvDEaqn~----~~ 190 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVR--RLGAS---FMQYCLRPEIGKVEIAPFA----YMRGRT--F-ENAVVILDEAQNV----TA 190 (262)
T ss_pred HHHHHHHHHHHHHHHHHH--HhChH---HHHHHHHhccCcEEEecHH----HhcCCc--c-cCCEEEEechhcC----CH
Confidence 111111100 0000 01110 0011111 11234444422 222222 2 3378999999987 45
Q ss_pred HHHHHHHHhCCCCCcEEEEc
Q 011901 264 EDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 264 ~~~~~i~~~~~~~~~~i~~S 283 (475)
.++..++.+++.+.++|+..
T Consensus 191 ~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 191 AQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred HHHHHHHhhcCCCCEEEEeC
Confidence 78889999999888777644
No 183
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.35 E-value=2.8e-06 Score=83.05 Aligned_cols=66 Identities=26% Similarity=0.293 Sum_probs=54.3
Q ss_pred CCCcHHHHHhhhhHhcCCc-EEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHH
Q 011901 120 SKLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~-~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 194 (475)
..+.+-|++|+......++ .+++||+|+|||.+....+.+.+.. +.++|+++||.+-+..+.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---------CCeEEEEcCchHHHHHHHHHhc
Confidence 4577889999999988755 7899999999998876666666644 7889999999999888887643
No 184
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.34 E-value=1.2e-06 Score=74.79 Aligned_cols=105 Identities=20% Similarity=0.339 Sum_probs=72.0
Q ss_pred cCCcEEEEecChhhHHHHHHHHHccC---CcccccCCCCHHHHHHHHHHHhcCCCcEEEecC--ccccCCCCCC--CCEE
Q 011901 343 KGGKCIVFTQTKRDADRLAHAMAKSY---NCEPLHGDISQSQRERTLSAFRDGRFNILIATD--VAARGLDVPN--VDLI 415 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~--~~~~Gidi~~--~~~v 415 (475)
.+++++||+++.+..+.+.+.+.... ....+.. +..+...+++.|.+++-.||+++. .+.+|+|+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 34799999999999999999886532 2233332 245788899999999999999998 9999999997 7789
Q ss_pred EEcCCCC-ChhH-----------------------------HHHhhhccCCCCCCCeEEEEecc
Q 011901 416 IHYELPN-TSET-----------------------------FVHRTGRTGRAGKKGSAILIYTD 449 (475)
Q Consensus 416 i~~~~p~-~~~~-----------------------------~~Q~~GR~gR~~~~g~~~~~~~~ 449 (475)
|+.+.|. ++.+ ..|.+||+-|...+--+++++++
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 9999885 2211 24999999998665445555554
No 185
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.29 E-value=1.8e-05 Score=77.33 Aligned_cols=139 Identities=19% Similarity=0.243 Sum_probs=76.9
Q ss_pred EEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCC-eEEEEcCCHHHHHHHHHHHHhhCC--C-CceEEEEcCcchhH---
Q 011901 141 GRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP-LCLVLAPTRELAKQVEKEFHESAP--S-LDTICVYGGTPISH--- 213 (475)
Q Consensus 141 i~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~-~~lil~Pt~~La~q~~~~~~~~~~--~-~~~~~~~~~~~~~~--- 213 (475)
..++||||||+++...++.+..+ |+ ..|+.|......+.....|..... . ..-...+++....-
T Consensus 2 f~matgsgkt~~ma~lil~~y~k---------gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkv 72 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK---------GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKV 72 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh---------chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeee
Confidence 46899999999887777776644 33 367777776666666554432110 0 00001112211110
Q ss_pred -HHHHhhcCCcEEEEccHHHHHHHHhCC---C---CCCCccE-EEEecccccccCC-------------chHHHHHHHHh
Q 011901 214 -QMRALDYGVDAVVGTPGRVIDLIKRNA---L---NLSEVQF-VVLDEADQMLSVG-------------FAEDVEVILER 272 (475)
Q Consensus 214 -~~~~~~~~~~Ilv~T~~~l~~~l~~~~---~---~~~~~~~-vViDE~H~~~~~~-------------~~~~~~~i~~~ 272 (475)
.......++.|.++|.+.|...+.+.. + ++.+.++ .+-||+|++-... +...+...++.
T Consensus 73 n~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~ 152 (812)
T COG3421 73 NNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQ 152 (812)
T ss_pred cccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhc
Confidence 011134568999999999987775532 2 2445554 5669999975321 11222222222
Q ss_pred CCCCCcEEEEccCCChh
Q 011901 273 LPQNRQSMMFSATMPPW 289 (475)
Q Consensus 273 ~~~~~~~i~~SAT~~~~ 289 (475)
+++.-++.+|||.+.+
T Consensus 153 -nkd~~~lef~at~~k~ 168 (812)
T COG3421 153 -NKDNLLLEFSATIPKE 168 (812)
T ss_pred -CCCceeehhhhcCCcc
Confidence 2344567789998843
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.20 E-value=5.4e-06 Score=80.06 Aligned_cols=108 Identities=15% Similarity=0.200 Sum_probs=66.6
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (475)
-++|.|.+|||||++++-. +..+.. ...+..+++++++..|.....+.+.+....
T Consensus 3 v~~I~G~aGTGKTvla~~l-~~~l~~------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~------------------ 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNL-AKELQN------SEEGKKVLYLCGNHPLRNKLREQLAKKYNP------------------ 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHH-HHHhhc------cccCCceEEEEecchHHHHHHHHHhhhccc------------------
Confidence 4789999999999866433 333311 124667999999999999888888665300
Q ss_pred hhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCC-------chHHHHHHHHh
Q 011901 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-------FAEDVEVILER 272 (475)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~-------~~~~~~~i~~~ 272 (475)
......+..+..+...+.........+++||+||||++...+ ....+..+++.
T Consensus 58 --~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 --KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001222333333333222222346789999999999987731 23455555555
No 187
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.14 E-value=3.5e-05 Score=67.69 Aligned_cols=149 Identities=19% Similarity=0.339 Sum_probs=93.9
Q ss_pred cccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhc---CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeE
Q 011901 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQ---GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~---~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 176 (475)
.|+....|+.++-.+.. ++ -+++.|.+....+.+ |.|.+.+.-+|.|||.+. +|++..+.. +....+
T Consensus 4 ~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LA-------dg~~Lv 73 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALA-------DGSRLV 73 (229)
T ss_pred CCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHc-------CCCcEE
Confidence 34455667777666643 33 489999999998885 478999999999999655 777777655 233457
Q ss_pred EEEcCCHHHHHHHHHHHHhhCCCC---ceEE--EEcCcchhH----HHH----HhhcCCcEEEEccHHHHHHHHhC----
Q 011901 177 LVLAPTRELAKQVEKEFHESAPSL---DTIC--VYGGTPISH----QMR----ALDYGVDAVVGTPGRVIDLIKRN---- 239 (475)
Q Consensus 177 lil~Pt~~La~q~~~~~~~~~~~~---~~~~--~~~~~~~~~----~~~----~~~~~~~Ilv~T~~~l~~~l~~~---- 239 (475)
.+++| +.|..|..+.+...+.++ ++.. +.-...... ... .....-.|+++||+.+..+...+
T Consensus 74 rviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l 152 (229)
T PF12340_consen 74 RVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERL 152 (229)
T ss_pred EEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHH
Confidence 78888 679999988887765422 1111 111221111 111 11234679999999886543111
Q ss_pred ---CC-----------CCCCccEEEEeccccccc
Q 011901 240 ---AL-----------NLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 240 ---~~-----------~~~~~~~vViDE~H~~~~ 259 (475)
.. .+++..-=|+||+|..+.
T Consensus 153 ~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 153 QDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 10 133344568899997654
No 188
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.13 E-value=4.3e-05 Score=80.36 Aligned_cols=133 Identities=22% Similarity=0.227 Sum_probs=82.6
Q ss_pred HHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHH
Q 011901 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (475)
Q Consensus 113 ~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~ 192 (475)
.+.+.....+++.|++|+..+..++-+++.|++|+|||.+. -.++..+... +....+++++||-.-|..+.+.
T Consensus 315 ~~~~~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~------~~~~~v~l~ApTg~AA~~L~e~ 387 (720)
T TIGR01448 315 EVEKKLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL------GGLLPVGLAAPTGRAAKRLGEV 387 (720)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc------CCCceEEEEeCchHHHHHHHHh
Confidence 33443335799999999999998888999999999999744 3444433220 1115688999998888754433
Q ss_pred HHhhCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHH-----hCCCCCCCccEEEEecccccccCCchHHHH
Q 011901 193 FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK-----RNALNLSEVQFVVLDEADQMLSVGFAEDVE 267 (475)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~-----~~~~~~~~~~~vViDE~H~~~~~~~~~~~~ 267 (475)
. +... .|..+++.... ...-.....++||+||++.+. ...+.
T Consensus 388 ~-----g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~ 434 (720)
T TIGR01448 388 T-----GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLAL 434 (720)
T ss_pred c-----CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHH
Confidence 2 1110 11111111000 000112457899999999763 34567
Q ss_pred HHHHhCCCCCcEEEEccC
Q 011901 268 VILERLPQNRQSMMFSAT 285 (475)
Q Consensus 268 ~i~~~~~~~~~~i~~SAT 285 (475)
.+++.++...+++++.-+
T Consensus 435 ~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 435 SLLAALPDHARLLLVGDT 452 (720)
T ss_pred HHHHhCCCCCEEEEECcc
Confidence 778888888888876544
No 189
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.13 E-value=5.7e-05 Score=77.35 Aligned_cols=143 Identities=19% Similarity=0.227 Sum_probs=88.3
Q ss_pred CcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCc
Q 011901 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 201 (475)
..++|+.|+...+.++-.++.|++|+|||.+. ..++..+.+.. ......+++++||-.-|....+.+......+.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~----~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~ 227 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA----DGERCRIRLAAPTGKAAARLTESLGKALRQLP 227 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc----CCCCcEEEEECCcHHHHHHHHHHHHhhhhccc
Confidence 45899999999999888999999999999654 33333333211 11245689999999998888877765433221
Q ss_pred eEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHH------HhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCC
Q 011901 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI------KRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (475)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l------~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~ 275 (475)
.. .. .......-..|-.+|+... ..+..+...+++|||||+-.+ -...+..+++.+++
T Consensus 228 ~~---------~~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~~ 291 (615)
T PRK10875 228 LT---------DE---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALPP 291 (615)
T ss_pred cc---------hh---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhccc
Confidence 10 00 0000011122333332211 111112335689999999975 35667788888998
Q ss_pred CCcEEEEccC
Q 011901 276 NRQSMMFSAT 285 (475)
Q Consensus 276 ~~~~i~~SAT 285 (475)
..++|++.-.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 8888887654
No 190
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.12 E-value=2.9e-05 Score=80.32 Aligned_cols=68 Identities=24% Similarity=0.230 Sum_probs=53.9
Q ss_pred CCCcHHHHHhhhhHhcC-CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 120 SKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
..|.+.|.+|+..++.. ...+++||+|+|||.+..-.+. ++.+ .+.++++++||..-+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~-~~~~--------~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIR-QLVK--------RGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHH-HHHH--------cCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 35789999999999876 5689999999999976544333 3332 2568999999999999998888764
No 191
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.08 E-value=6.8e-05 Score=76.63 Aligned_cols=142 Identities=20% Similarity=0.226 Sum_probs=87.5
Q ss_pred HHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceE
Q 011901 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI 203 (475)
Q Consensus 124 ~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~ 203 (475)
++|+.|+..++.++-.++.|++|||||.+. ..++..+.+.... ..+.++++.+||---|....+.+......+...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~---~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK---QGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc---cCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 799999999999888999999999999754 3333333321111 113569999999888887777765543222110
Q ss_pred EEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHH------hCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCC
Q 011901 204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK------RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (475)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~------~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~ 277 (475)
.. ......+-..|-.+|+.... ....+...+++|||||+=.+ -...+..+++.+++..
T Consensus 224 --------~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv----d~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 --------EA----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV----DLPLMAKLLKALPPNT 287 (586)
T ss_pred --------hh----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC----CHHHHHHHHHhcCCCC
Confidence 00 00011122334333332211 11112346789999999975 3456777888888888
Q ss_pred cEEEEccC
Q 011901 278 QSMMFSAT 285 (475)
Q Consensus 278 ~~i~~SAT 285 (475)
++|++.-.
T Consensus 288 rlIlvGD~ 295 (586)
T TIGR01447 288 KLILLGDK 295 (586)
T ss_pred EEEEECCh
Confidence 88876544
No 192
>PF13245 AAA_19: Part of AAA domain
Probab=98.00 E-value=3.6e-05 Score=55.77 Aligned_cols=60 Identities=27% Similarity=0.422 Sum_probs=40.0
Q ss_pred hhhhHhcCCc-EEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHH
Q 011901 129 VLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (475)
Q Consensus 129 ~i~~i~~~~~-~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 193 (475)
++...+.+.. +++.||+|||||.+..-.+...+.. .... +..+++++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~----~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAA----RADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHH----hcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443333334 5669999999997664444444321 1112 567999999999999988887
No 193
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.99 E-value=2.9e-05 Score=79.81 Aligned_cols=100 Identities=13% Similarity=0.185 Sum_probs=84.0
Q ss_pred CcEEEEecChhhHHHHHHHHH-ccCCcccccCCCCHHHHHHHHHHHhcCC-CcE-EEecCccccCCCCCCCCEEEEcCCC
Q 011901 345 GKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR-FNI-LIATDVAARGLDVPNVDLIIHYELP 421 (475)
Q Consensus 345 ~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~v-lvaT~~~~~Gidi~~~~~vi~~~~p 421 (475)
.+++||+.-..-+..+...+. +++....+.|.|+...|.+.+..|..+. ..| +++..+...|+|+..+.+|+..|+.
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 389999999988888877775 4477788999999999999999998543 333 4466788899999999999999999
Q ss_pred CChhHHHHhhhccCCCCCCCeEE
Q 011901 422 NTSETFVHRTGRTGRAGKKGSAI 444 (475)
Q Consensus 422 ~~~~~~~Q~~GR~gR~~~~g~~~ 444 (475)
|++..-.|.+-|+.|-|+.-.+.
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~ 642 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVK 642 (674)
T ss_pred cChHHHHHHHHHHHHhcccceee
Confidence 99999999999999988755443
No 194
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.97 E-value=0.00018 Score=77.29 Aligned_cols=126 Identities=18% Similarity=0.118 Sum_probs=79.2
Q ss_pred cCCCCCcHHHHHhhhhHhcCCc-EEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHh
Q 011901 117 RGISKLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~-~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 195 (475)
.|+ .|++-|.+|+..++.+++ ++++|..|+|||.+ +-.+...+ + ..|.+++.++||-.-+....+..
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~-e-------~~G~~V~~~ApTGkAA~~L~e~t-- 410 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAW-E-------AAGYEVRGAALSGIAAENLEGGS-- 410 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHH-H-------HcCCeEEEecCcHHHHHHHhhcc--
Confidence 454 699999999999998654 78999999999974 33333333 2 23778999999987765543210
Q ss_pred hCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhC-C
Q 011901 196 SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-P 274 (475)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~-~ 274 (475)
++. -.|..+|..-...+...+...++|||||+-.+. ...+..+++.. +
T Consensus 411 ---Gi~------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~ 459 (988)
T PRK13889 411 ---GIA------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAAD 459 (988)
T ss_pred ---Ccc------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhh
Confidence 110 012222222112222335677899999999763 34555666544 4
Q ss_pred CCCcEEEEccC
Q 011901 275 QNRQSMMFSAT 285 (475)
Q Consensus 275 ~~~~~i~~SAT 285 (475)
...++|++.-+
T Consensus 460 ~garvVLVGD~ 470 (988)
T PRK13889 460 AGAKVVLVGDP 470 (988)
T ss_pred CCCEEEEECCH
Confidence 56677776655
No 195
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.96 E-value=7.2e-05 Score=76.46 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=90.2
Q ss_pred CCCCCcHHHHHhhhhHhc----CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhc----------------C--------
Q 011901 118 GISKLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH----------------G-------- 169 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~----~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~----------------~-------- 169 (475)
-+++|++.|...+..++. ..+.++..|||+|||+..+-..|........+. +
T Consensus 18 fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s 97 (945)
T KOG1132|consen 18 FPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKS 97 (945)
T ss_pred ccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCch
Confidence 346799999888877664 478999999999999988777776654432110 0
Q ss_pred ---C------CCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcc---------------hhH------------
Q 011901 170 ---R------GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP---------------ISH------------ 213 (475)
Q Consensus 170 ---~------~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~---------------~~~------------ 213 (475)
. -..+++.+-.-|-.-..|+.+++++..-..+.+++..-.. ...
T Consensus 98 ~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~ 177 (945)
T KOG1132|consen 98 EEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCH 177 (945)
T ss_pred hhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEeecchhhccCHHHhhhhcchhhhhHHHhhccccccc
Confidence 0 1246677777777788889888876532233222211000 000
Q ss_pred -------------------H------------------HHHhhcCCcEEEEccHHHHHHHHhCC--CCCCCccEEEEecc
Q 011901 214 -------------------Q------------------MRALDYGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEA 254 (475)
Q Consensus 214 -------------------~------------------~~~~~~~~~Ilv~T~~~l~~~l~~~~--~~~~~~~~vViDE~ 254 (475)
. .+.+...++|+++-+..|.+-.-++. ++++ -.+||+|||
T Consensus 178 f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lk-nsIVIfDEA 256 (945)
T KOG1132|consen 178 FYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLK-NSIVIFDEA 256 (945)
T ss_pred ccccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhcccccccc-ccEEEEecc
Confidence 0 11222368999999999988776655 3332 358999999
Q ss_pred cccc
Q 011901 255 DQML 258 (475)
Q Consensus 255 H~~~ 258 (475)
|.+.
T Consensus 257 HNiE 260 (945)
T KOG1132|consen 257 HNIE 260 (945)
T ss_pred ccHH
Confidence 9874
No 196
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.92 E-value=0.00026 Score=74.79 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=75.2
Q ss_pred CCCcHHHHHhhhhHhcC-CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC
Q 011901 120 SKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 198 (475)
..|++-|++|+..++.+ +-+++.|++|+|||.+. -.+...+ . ..+..+++++||-.-+....+..
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~-~-------~~g~~V~~~ApTg~Aa~~L~~~~----- 416 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAW-E-------AAGYRVIGAALSGKAAEGLQAES----- 416 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHH-H-------hCCCeEEEEeCcHHHHHHHHhcc-----
Confidence 46999999999999874 56899999999999643 3333333 2 13678999999987776554321
Q ss_pred CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhC-CCCC
Q 011901 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNR 277 (475)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~-~~~~ 277 (475)
++.. .|-.++......+...+...++|||||+-.+.. ..+..++... ....
T Consensus 417 g~~a------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~~~~~~~ 468 (744)
T TIGR02768 417 GIES------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARVLKEAEEAGA 468 (744)
T ss_pred CCce------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHHHHHHHhcCC
Confidence 1111 122222111122223356788999999997633 3344555532 3456
Q ss_pred cEEEEc
Q 011901 278 QSMMFS 283 (475)
Q Consensus 278 ~~i~~S 283 (475)
++|++.
T Consensus 469 kliLVG 474 (744)
T TIGR02768 469 KVVLVG 474 (744)
T ss_pred EEEEEC
Confidence 666665
No 197
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.89 E-value=4.4e-05 Score=70.59 Aligned_cols=146 Identities=18% Similarity=0.274 Sum_probs=85.8
Q ss_pred cCCCCCcHHHHHhhhhHhcCC--cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHH
Q 011901 117 RGISKLFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~--~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 194 (475)
.|+......|.-|++.++... =+.+.|+.|||||+.++.+.+.+.... ....++++.=|+..+.+.+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~------~~y~KiiVtRp~vpvG~dI----- 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER------KRYRKIIVTRPTVPVGEDI----- 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH------hhhceEEEecCCcCccccc-----
Confidence 366666678899999988753 278899999999999888888777652 1233477777776655432
Q ss_pred hhCCCCceEEEEcCcchhHHHHHhhcCCcEE----EEccHHHHHHHHhCCCCCCC----------ccEEEEecccccccC
Q 011901 195 ESAPSLDTICVYGGTPISHQMRALDYGVDAV----VGTPGRVIDLIKRNALNLSE----------VQFVVLDEADQMLSV 260 (475)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il----v~T~~~l~~~l~~~~~~~~~----------~~~vViDE~H~~~~~ 260 (475)
.+.|+.. ..+...+...+..+-..+ =++.+.+...+.+..+.+.. -.+||+|||+.+
T Consensus 293 GfLPG~e------EeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL--- 363 (436)
T COG1875 293 GFLPGTE------EEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL--- 363 (436)
T ss_pred CcCCCch------hhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc---
Confidence 0111000 000001111111000000 12234444554444332221 247999999987
Q ss_pred CchHHHHHHHHhCCCCCcEEEEc
Q 011901 261 GFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 261 ~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
-..+++.++.+..+...++++.
T Consensus 364 -TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 -TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred -CHHHHHHHHHhccCCCEEEEcC
Confidence 6678899999999888777754
No 198
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.75 E-value=0.00074 Score=73.11 Aligned_cols=138 Identities=19% Similarity=0.164 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHhhhhHhc-CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCH
Q 011901 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 105 ~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~-~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
++++..+......+ ..|++-|.+++..+.. ++-.+++|+.|+|||.+. -++...+. ..|.+++.++||-
T Consensus 366 ~v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e--------~~G~~V~g~ApTg 435 (1102)
T PRK13826 366 GVREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWE--------AAGYRVVGGALAG 435 (1102)
T ss_pred CCCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHH--------HcCCeEEEEcCcH
Confidence 44555555544444 4699999999998864 455899999999999643 34443332 2477899999997
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCch
Q 011901 184 ELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (475)
Q Consensus 184 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~ 263 (475)
.-+....+.. ++.. .|...|......+...+..-++|||||+..+ -.
T Consensus 436 kAA~~L~e~~-----Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv----~~ 482 (1102)
T PRK13826 436 KAAEGLEKEA-----GIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMV----AS 482 (1102)
T ss_pred HHHHHHHHhh-----CCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccC----CH
Confidence 7776554321 1211 1222221111112233566779999999975 34
Q ss_pred HHHHHHHHhCC-CCCcEEEEccC
Q 011901 264 EDVEVILERLP-QNRQSMMFSAT 285 (475)
Q Consensus 264 ~~~~~i~~~~~-~~~~~i~~SAT 285 (475)
..+..+++... ...++|++.-+
T Consensus 483 ~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 483 RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHHhcCCEEEEECCH
Confidence 55666777664 46677776654
No 199
>PRK06526 transposase; Provisional
Probab=97.65 E-value=0.00078 Score=61.51 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=28.0
Q ss_pred CCCccEEEEecccccccCCc-hHHHHHHHHhCCCCCcEEEEccCCChh
Q 011901 243 LSEVQFVVLDEADQMLSVGF-AEDVEVILERLPQNRQSMMFSATMPPW 289 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~-~~~~~~i~~~~~~~~~~i~~SAT~~~~ 289 (475)
+.+.+++|+||+|....... ...+..++........+|+.|..++..
T Consensus 157 l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 157 LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 44578999999997643222 223445544333334577777776554
No 200
>PRK04296 thymidine kinase; Provisional
Probab=97.58 E-value=0.00027 Score=61.77 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=23.2
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcC
Q 011901 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~P 181 (475)
-.++.|++|+|||..++-.+. .+.. .+.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~-~~~~--------~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAY-NYEE--------RGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHH-HHHH--------cCCeEEEEec
Confidence 468899999999965543333 3322 2566888766
No 201
>PRK08181 transposase; Validated
Probab=97.57 E-value=0.002 Score=59.25 Aligned_cols=109 Identities=13% Similarity=0.076 Sum_probs=58.3
Q ss_pred HhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchh
Q 011901 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~ 212 (475)
+..+.++++.||+|+|||..+...+ ..+.+ .|..++++ +...|..+.......
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia-~~a~~--------~g~~v~f~-~~~~L~~~l~~a~~~----------------- 155 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIG-LALIE--------NGWRVLFT-RTTDLVQKLQVARRE----------------- 155 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHH-HHHHH--------cCCceeee-eHHHHHHHHHHHHhC-----------------
Confidence 3466789999999999997554332 23322 24445544 445555544322100
Q ss_pred HHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCc-hHHHHHHHHhCCCCCcEEEEccCCChh
Q 011901 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF-AEDVEVILERLPQNRQSMMFSATMPPW 289 (475)
Q Consensus 213 ~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~-~~~~~~i~~~~~~~~~~i~~SAT~~~~ 289 (475)
.+.+.+... +.+.+++|+||.+....... ...+..++........+++.|-.++..
T Consensus 156 --------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~ 212 (269)
T PRK08181 156 --------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGE 212 (269)
T ss_pred --------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 111112221 45678899999997644322 233445554433345566666555443
No 202
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.53 E-value=0.00066 Score=70.37 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=85.9
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCc-EEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCH
Q 011901 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 105 ~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~-~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
.+.+++.+. ....|..-|++|+..++.-+| .+|.|=+|+|||.+.... +..+.. .|.++|+.+=|.
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~L-IkiL~~--------~gkkVLLtsyTh 723 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLL-IKILVA--------LGKKVLLTSYTH 723 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHH-HHHHHH--------cCCeEEEEehhh
Confidence 344555443 123677899999999987766 789999999999755333 333322 377799999988
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEcCc-ch-----------------hHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCC
Q 011901 184 ELAKQVEKEFHESAPSLDTICVYGGT-PI-----------------SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSE 245 (475)
Q Consensus 184 ~La~q~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~ 245 (475)
.-+..+.-.++... +.... .|.. .. -...+..-+...|+.||.-.+.+.+. ..+.
T Consensus 724 sAVDNILiKL~~~~--i~~lR-LG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R~ 796 (1100)
T KOG1805|consen 724 SAVDNILIKLKGFG--IYILR-LGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNRQ 796 (1100)
T ss_pred HHHHHHHHHHhccC--cceee-cCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hccc
Confidence 87777766666542 22111 1111 11 11122233557899998766665543 2556
Q ss_pred ccEEEEeccccccc
Q 011901 246 VQFVVLDEADQMLS 259 (475)
Q Consensus 246 ~~~vViDE~H~~~~ 259 (475)
++++|+|||-.+..
T Consensus 797 FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 797 FDYCIIDEASQILL 810 (1100)
T ss_pred cCEEEEcccccccc
Confidence 99999999998643
No 203
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.49 E-value=0.0003 Score=57.39 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=12.5
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++.+++.|++|+|||.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 456899999999999754
No 204
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.45 E-value=0.0018 Score=53.60 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+..+++.|++|+|||..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999633
No 205
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.45 E-value=0.00038 Score=66.26 Aligned_cols=123 Identities=18% Similarity=0.100 Sum_probs=74.9
Q ss_pred CcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCc
Q 011901 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 201 (475)
|++-|.+++.. ...+++|.|..|||||.+.+.-+...+.... ....+++++++|+..+..+.+.+...+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~ 73 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIRELLEEEQ 73 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHhcCccc
Confidence 57889999988 5678999999999999877666665554421 2244599999999999999988887532110
Q ss_pred eEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCC--CCccEEEEeccc
Q 011901 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNL--SEVQFVVLDEAD 255 (475)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~--~~~~~vViDE~H 255 (475)
.. ................+.|+|.+.+...+.+..... -.-.+-++|+..
T Consensus 74 ~~----~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 QE----SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HC----CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc----ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 000001111222335788999988865443321111 123456777776
No 206
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.43 E-value=0.00094 Score=54.93 Aligned_cols=76 Identities=22% Similarity=0.294 Sum_probs=52.9
Q ss_pred ccCCCCHHHHHHHHHHHhcCC-CcEEEecCccccCCCCCC--CCEEEEcCCCC-Ch------------------------
Q 011901 373 LHGDISQSQRERTLSAFRDGR-FNILIATDVAARGLDVPN--VDLIIHYELPN-TS------------------------ 424 (475)
Q Consensus 373 ~h~~~~~~~r~~~~~~f~~g~-~~vlvaT~~~~~Gidi~~--~~~vi~~~~p~-~~------------------------ 424 (475)
+..+.+..+...+++.|++.. ..||+++..+.+|+|+|+ ++.||+.+.|. ++
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~ 106 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFV 106 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHH
Confidence 333445556788899998754 379999988999999997 57898888764 11
Q ss_pred ------hHHHHhhhccCCCCCCCeEEEEec
Q 011901 425 ------ETFVHRTGRTGRAGKKGSAILIYT 448 (475)
Q Consensus 425 ------~~~~Q~~GR~gR~~~~g~~~~~~~ 448 (475)
..+.|.+||+-|...+--++++++
T Consensus 107 ~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 107 SLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 113488899999765433444443
No 207
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.36 E-value=0.015 Score=67.96 Aligned_cols=210 Identities=15% Similarity=0.143 Sum_probs=112.7
Q ss_pred CCCcHHHHHhhhhHhcC--CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
..|++-|.+++..++.. +-.+++|+.|+|||.+. -.+. .+.+ ..|..++.++||-.-+....+......
T Consensus 428 ~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~-~~~~-------~~G~~V~~lAPTgrAA~~L~e~~g~~A 498 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLL-HLAS-------EQGYEIQIITAGSLSAQELRQKIPRLA 498 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHH-HHHH-------hcCCeEEEEeCCHHHHHHHHHHhcchh
Confidence 36899999999999875 45899999999999633 3333 3332 247889999999887776655432110
Q ss_pred CCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhC-CCC
Q 011901 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQN 276 (475)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~-~~~ 276 (475)
.+.......+.. ..-..|...|. .....+..-++|||||+-.+ -...+..+++.. +.+
T Consensus 499 -----------~Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl----~~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 499 -----------STFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKL----SNNELLKLIDKAEQHN 557 (1960)
T ss_pred -----------hhHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCC----CHHHHHHHHHHHhhcC
Confidence 001111111111 11112222232 22233567789999999976 345667777655 457
Q ss_pred CcEEEEccCC-------ChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccch-HHHHHHHHHhccCCcEE
Q 011901 277 RQSMMFSATM-------PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP-SIIGQLITEHAKGGKCI 348 (475)
Q Consensus 277 ~~~i~~SAT~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~l 348 (475)
.++|++.-+- ...+.. ..... -..+.+....... ..+ .....+...+. .+...++.......+++
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~-L~~~g--v~t~~l~~i~rq~--~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tl 630 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDL-LKEGG--VTTYAWVDTKQQK--ASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQ 630 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHH-HHHCC--CcEEEeecccccC--cce--eeeccCchHHHHHHHHHHHhcccccCceE
Confidence 8888776552 122232 22221 1111111111111 111 11111111111 23333443333444699
Q ss_pred EEecChhhHHHHHHHHHc
Q 011901 349 VFTQTKRDADRLAHAMAK 366 (475)
Q Consensus 349 Vf~~~~~~~~~l~~~L~~ 366 (475)
|+.++.++...+....+.
T Consensus 631 iv~~t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 631 VLATTHREQQDLTQIIRN 648 (1960)
T ss_pred EEcCCcHHHHHHHHHHHH
Confidence 999998888888777754
No 208
>PHA02533 17 large terminase protein; Provisional
Probab=97.33 E-value=0.0024 Score=64.66 Aligned_cols=151 Identities=15% Similarity=0.109 Sum_probs=86.8
Q ss_pred CCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC
Q 011901 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 198 (475)
++.|.|+|++.+..+..++-.++..+=..|||.+....++..... ..+..+++++|+..-|..+++.++....
T Consensus 57 Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-------~~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-------NKDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred ecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 357999999999887655566788889999998776555444332 2356899999999999999988876543
Q ss_pred CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCC--C
Q 011901 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--N 276 (475)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~--~ 276 (475)
.+......+-.........+.++..|.+.|.+. +...=.+..++++||+|.+.+ +...+..+...+.. .
T Consensus 130 ~~P~l~~~~i~~~~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~ 200 (534)
T PHA02533 130 LLPDFLQPGIVEWNKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRS 200 (534)
T ss_pred hCHHHhhcceeecCccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCC
Confidence 221100000000011111224566665555321 111123567899999997644 22333333333322 2
Q ss_pred CcEEEEccC
Q 011901 277 RQSMMFSAT 285 (475)
Q Consensus 277 ~~~i~~SAT 285 (475)
.+++..|.+
T Consensus 201 ~r~iiiSTp 209 (534)
T PHA02533 201 SKIIITSTP 209 (534)
T ss_pred ceEEEEECC
Confidence 345555544
No 209
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.26 E-value=0.00077 Score=61.16 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=32.4
Q ss_pred CCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCC
Q 011901 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 241 ~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 286 (475)
.....++.+|+||||.|... -...+.+.++..+....+++.+-.+
T Consensus 125 ~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCCh
Confidence 34667899999999998654 3445566667766677777777665
No 210
>PRK14974 cell division protein FtsY; Provisional
Probab=97.26 E-value=0.0061 Score=57.86 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=38.1
Q ss_pred CCccEEEEecccccccC-CchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhh
Q 011901 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 297 (475)
.+.++|++|.+.++... .....+..+.+...+...+++++||........+..|
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 35679999999987532 2456666777767777778899999876555545544
No 211
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.22 E-value=0.0011 Score=59.61 Aligned_cols=86 Identities=24% Similarity=0.361 Sum_probs=68.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhhC-CCCceEEEEcCc-chhHHHHHhh-cCCcEEEEccHHHHHHHHhCCCCCCCcc
Q 011901 171 GRNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGT-PISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (475)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~ 247 (475)
...|.+||++..-.-|-.+.+.++.+- .+..+.-++... ...++...+. ...+|.||||+++..+++.+.+.++++.
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 346889999999888999999988873 334444445444 5666666666 4599999999999999999999999999
Q ss_pred EEEEecccc
Q 011901 248 FVVLDEADQ 256 (475)
Q Consensus 248 ~vViDE~H~ 256 (475)
+||+|--|.
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999998774
No 212
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.22 E-value=0.0016 Score=53.75 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCC---cEEEecCc--cccCCCCCC--CCEEEEcCCCC-Ch---h-----------------------
Q 011901 380 SQRERTLSAFRDGRF---NILIATDV--AARGLDVPN--VDLIIHYELPN-TS---E----------------------- 425 (475)
Q Consensus 380 ~~r~~~~~~f~~g~~---~vlvaT~~--~~~Gidi~~--~~~vi~~~~p~-~~---~----------------------- 425 (475)
.+...+++.|++... .||+++.- +++|+|+|+ ++.||+.+.|. ++ .
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 345678888886543 58888866 999999998 67899888774 11 1
Q ss_pred ----HHHHhhhccCCCCCCCeEEEEecc
Q 011901 426 ----TFVHRTGRTGRAGKKGSAILIYTD 449 (475)
Q Consensus 426 ----~~~Q~~GR~gR~~~~g~~~~~~~~ 449 (475)
.+.|.+||+-|...+--+++++++
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEec
Confidence 134999999998655445555443
No 213
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.21 E-value=0.0015 Score=63.39 Aligned_cols=60 Identities=27% Similarity=0.357 Sum_probs=44.4
Q ss_pred CCcHHHHHhhhhH------hcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHH
Q 011901 121 KLFPIQKAVLEPA------MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (475)
Q Consensus 121 ~l~~~Q~~~i~~i------~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (475)
.|.+-|+++++.+ ..+.++++.|+-|+|||.++ -.+..... ..+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~--~~i~~~~~-------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI--KAIIDYLR-------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH--HHHHHHhc-------cccceEEEecchHHHHHhc
Confidence 3678899998888 56778999999999999743 33333322 2356799999998877655
No 214
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.13 E-value=0.0028 Score=59.81 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=22.6
Q ss_pred cEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCC
Q 011901 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 247 ~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 286 (475)
.++++||+||+ .......+--.-.+..+++..||-
T Consensus 106 tiLflDEIHRf-----nK~QQD~lLp~vE~G~iilIGATT 140 (436)
T COG2256 106 TILFLDEIHRF-----NKAQQDALLPHVENGTIILIGATT 140 (436)
T ss_pred eEEEEehhhhc-----ChhhhhhhhhhhcCCeEEEEeccC
Confidence 46999999994 443333333333566788888885
No 215
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.11 E-value=0.0016 Score=53.53 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+..+++.||+|||||..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 457899999999999754
No 216
>PRK06921 hypothetical protein; Provisional
Probab=97.09 E-value=0.011 Score=54.53 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l 161 (475)
+.++++.|++|+|||..+ .++...+
T Consensus 117 ~~~l~l~G~~G~GKThLa-~aia~~l 141 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL-TAAANEL 141 (266)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHH
Confidence 467999999999999754 3444444
No 217
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.011 Score=57.14 Aligned_cols=122 Identities=14% Similarity=0.082 Sum_probs=64.7
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEc--CCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHH
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA--PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (475)
..+++.||||+|||.+..-.+.....+. ...+..+.++. +.+.-+..+...+.+.. ++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~-----~~~g~~V~lit~Dt~R~aa~eQL~~~a~~l-gvpv~----------- 237 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINS-----DDKSLNIKIITIDNYRIGAKKQIQTYGDIM-GIPVK----------- 237 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh-----ccCCCeEEEEeccCccHHHHHHHHHHhhcC-CcceE-----------
Confidence 4588999999999987643332221110 01133344333 33444443333333321 12211
Q ss_pred HHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCC-chHHHHHHHHhCCCC-CcEEEEccCCChh
Q 011901 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQN-RQSMMFSATMPPW 289 (475)
Q Consensus 215 ~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~-~~~~~~~i~~~~~~~-~~~i~~SAT~~~~ 289 (475)
.+-++..+...+.. +.+.++|++|++.+..... ....+..++...... -.++++|||....
T Consensus 238 ----------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 238 ----------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS 300 (388)
T ss_pred ----------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH
Confidence 11234445454443 4678999999999875321 223455555555433 3568899998753
No 218
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.08 E-value=0.0015 Score=59.53 Aligned_cols=57 Identities=26% Similarity=0.448 Sum_probs=49.3
Q ss_pred HHHHHHhcCCCcEEEecCccccCCCCCC--------CCEEEEcCCCCChhHHHHhhhccCCCCCC
Q 011901 384 RTLSAFRDGRFNILIATDVAARGLDVPN--------VDLIIHYELPNTSETFVHRTGRTGRAGKK 440 (475)
Q Consensus 384 ~~~~~f~~g~~~vlvaT~~~~~Gidi~~--------~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~ 440 (475)
...+.|.+|+..|+|.|++.+.|+.+-. -++.|.+.+||+....+|..||++|.|+.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccc
Confidence 3466899999999999999999997652 34678899999999999999999999873
No 219
>PRK08116 hypothetical protein; Validated
Probab=97.06 E-value=0.019 Score=53.06 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=26.6
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (475)
.+++.|++|+|||..+. ++...+.+ .+..++++ +...+..++..
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~--------~~~~v~~~-~~~~ll~~i~~ 159 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIE--------KGVPVIFV-NFPQLLNRIKS 159 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHH--------cCCeEEEE-EHHHHHHHHHH
Confidence 49999999999997553 44555543 13345444 44555544433
No 220
>PRK06893 DNA replication initiation factor; Validated
Probab=97.01 E-value=0.0026 Score=57.35 Aligned_cols=46 Identities=17% Similarity=0.391 Sum_probs=28.7
Q ss_pred CCCccEEEEecccccccCC-chHHHHHHHHhCCC-CCcEEEEccCCCh
Q 011901 243 LSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQ-NRQSMMFSATMPP 288 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~-~~~~~~~i~~~~~~-~~~~i~~SAT~~~ 288 (475)
+.+.+++++||+|.+.... +...+..++..... ..+++++|++.+|
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 4467899999999875432 33345555555433 3456677777554
No 221
>PRK08727 hypothetical protein; Validated
Probab=96.99 E-value=0.0054 Score=55.50 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=26.6
Q ss_pred CCCccEEEEecccccccCC-chHHHHHHHHhCCC-CCcEEEEccCCChhH
Q 011901 243 LSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQ-NRQSMMFSATMPPWI 290 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~-~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~ 290 (475)
+.+.++||+||+|.+.... ....+..++..... ..++|+.|-.++...
T Consensus 91 l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 91 LEGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred HhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 4456789999999876543 22233344444322 345555555544433
No 222
>PRK05642 DNA replication initiation factor; Validated
Probab=96.95 E-value=0.0055 Score=55.47 Aligned_cols=46 Identities=22% Similarity=0.458 Sum_probs=29.0
Q ss_pred CCCccEEEEecccccccC-CchHHHHHHHHhCCCCCcEEEEccCCCh
Q 011901 243 LSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 288 (475)
+.+.+++++|++|.+... .+...+..++..+......+++|+|.+|
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 345678999999987543 2345566777666544445666666444
No 223
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.94 E-value=0.0053 Score=55.65 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+++.||+|+|||...
T Consensus 46 ~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 46 GYIYLWSREGAGRSHLL 62 (235)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999744
No 224
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.93 E-value=0.0068 Score=63.40 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=57.0
Q ss_pred HHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHH
Q 011901 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (475)
Q Consensus 112 ~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (475)
..+.......|++-|++|+-.- ..+++|.|..|||||.+...-+...+... ...+.++++++.|+..|..+.+
T Consensus 187 ~~f~~~e~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~-----~~~~~~IL~ltft~~AA~em~e 259 (684)
T PRK11054 187 DFFSQVESSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARG-----QAQPEQILLLAFGRQAAEEMDE 259 (684)
T ss_pred HHHHhccCCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhC-----CCCHHHeEEEeccHHHHHHHHH
Confidence 4444444467999999998643 34689999999999987655444333221 1224579999999999999999
Q ss_pred HHHhhC
Q 011901 192 EFHESA 197 (475)
Q Consensus 192 ~~~~~~ 197 (475)
++....
T Consensus 260 RL~~~l 265 (684)
T PRK11054 260 RIRERL 265 (684)
T ss_pred HHHHhc
Confidence 888765
No 225
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.92 E-value=0.0028 Score=62.49 Aligned_cols=146 Identities=14% Similarity=0.267 Sum_probs=81.1
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHH-HHHHHHHHHHhhCCCCceEEEEcCcchhHHHH
Q 011901 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE-LAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~-La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (475)
-.++.|..|||||.+...-++..+... ..+.+++++-|+.. +...++..+......+................
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~ 76 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEIK 76 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEEE
Confidence 367899999999998888777776652 13566888988876 66667777765443322111110000000111
Q ss_pred HhhcCCcEEEEcc-HHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCC--CCcEEEEccCCChhHHHH
Q 011901 217 ALDYGVDAVVGTP-GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSL 293 (475)
Q Consensus 217 ~~~~~~~Ilv~T~-~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~ 293 (475)
....+..|++..- +...+ +. ....++++.+||+..+... .+..++.+++. ....+++|.||.....-+
T Consensus 77 ~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w~ 147 (396)
T TIGR01547 77 ILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLHWV 147 (396)
T ss_pred ecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCccHH
Confidence 1112455666554 22221 11 1334689999999987432 44444444432 222488899987543344
Q ss_pred HHhhc
Q 011901 294 TNKYL 298 (475)
Q Consensus 294 ~~~~~ 298 (475)
...+.
T Consensus 148 ~~~f~ 152 (396)
T TIGR01547 148 KKRFI 152 (396)
T ss_pred HHHHH
Confidence 44443
No 226
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.91 E-value=0.021 Score=51.73 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=25.2
Q ss_pred CCCccEEEEecccccccCCchH-HHHHHHHh-CCCCCcEEEEccC
Q 011901 243 LSEVQFVVLDEADQMLSVGFAE-DVEVILER-LPQNRQSMMFSAT 285 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~-~~~~i~~~-~~~~~~~i~~SAT 285 (475)
+.+.+++||||++......+.. .+..++.. ......+++.|--
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4578899999999765443433 33344443 3334556665544
No 227
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.90 E-value=0.005 Score=54.05 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=14.3
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
+++++||+|+|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 6999999999999755
No 228
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.90 E-value=0.01 Score=66.81 Aligned_cols=127 Identities=17% Similarity=0.206 Sum_probs=75.3
Q ss_pred CCCcHHHHHhhhhHhcC--CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
..|++-|++|+..++.. +-++++|..|+|||.+. -.++..+.... ...++.++.++||-.-+....+ .
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~----e~~g~~V~glAPTgkAa~~L~e----~- 903 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNMLP----ESERPRVVGLGPTHRAVGEMRS----A- 903 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHHh----hccCceEEEEechHHHHHHHHH----h-
Confidence 36999999999999965 56899999999999753 22222221110 1236779999999877765532 1
Q ss_pred CCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHH----HhCCCCCCCccEEEEecccccccCCchHHHHHHHHhC
Q 011901 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI----KRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (475)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l----~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~ 273 (475)
++.. .|-.+|+... ..+........++||||+=.+ -...+..++..+
T Consensus 904 -Gi~A------------------------~TIasfL~~~~~~~~~~~~~~~~~~llIVDEASMV----~~~~m~~ll~~~ 954 (1623)
T PRK14712 904 -GVDA------------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMV----GNTDMARAYALI 954 (1623)
T ss_pred -CchH------------------------hhHHHHhccccchhhcccCCCCCCcEEEEEccccc----cHHHHHHHHHhh
Confidence 1111 1111111100 011111234579999999975 334555666666
Q ss_pred CC-CCcEEEEccC
Q 011901 274 PQ-NRQSMMFSAT 285 (475)
Q Consensus 274 ~~-~~~~i~~SAT 285 (475)
+. ..++|++.-+
T Consensus 955 ~~~garvVLVGD~ 967 (1623)
T PRK14712 955 AAGGGRAVASGDT 967 (1623)
T ss_pred hhCCCEEEEEcch
Confidence 53 4667776655
No 229
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.04 Score=52.94 Aligned_cols=128 Identities=12% Similarity=0.175 Sum_probs=66.9
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcC--CH-HHHHHHHHHHHhhCCCCceEEEEcCcchhH
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP--TR-ELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~P--t~-~La~q~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (475)
+.+.+.|++|+|||......+. .+.. .+.++.++.. .+ ..+.|+....... +
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~--------~GkkVglI~aDt~RiaAvEQLk~yae~l--g-------------- 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHG--------KKKTVGFITTDHSRIGTVQQLQDYVKTI--G-------------- 296 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHH--------cCCcEEEEecCCcchHHHHHHHHHhhhc--C--------------
Confidence 4578999999999976544433 2221 2444544442 23 2333433222111 1
Q ss_pred HHHHhhcCCcEE-EEccHHHHHHHHhCCCCCCCccEEEEecccccccCC-chHHHHHHHHhCCCCCcEEEEccCCCh-hH
Q 011901 214 QMRALDYGVDAV-VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPP-WI 290 (475)
Q Consensus 214 ~~~~~~~~~~Il-v~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~ 290 (475)
+.++ ..++..+.+.+..-.. ..++++|+||-+=+..... .-..+..+++...+..-++.+|||... ..
T Consensus 297 --------ipv~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 297 --------FEVIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred --------CcEEecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 2222 3456666655543110 1257899999987754321 233444555544444446779998765 33
Q ss_pred HHHHHhhc
Q 011901 291 RSLTNKYL 298 (475)
Q Consensus 291 ~~~~~~~~ 298 (475)
......|-
T Consensus 368 ~~i~~~F~ 375 (436)
T PRK11889 368 IEIITNFK 375 (436)
T ss_pred HHHHHHhc
Confidence 55555543
No 230
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.86 E-value=0.0042 Score=66.44 Aligned_cols=154 Identities=19% Similarity=0.120 Sum_probs=91.6
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhh---------hhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCC-ceEEE
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKF---------NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL-DTICV 205 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~---------~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~ 205 (475)
|+++++.-..|.|||..-+...+...-+. .........+-+||+|| .++..||+.++.+..+.. ++...
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P-~aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICP-NAILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECc-HHHHHHHHHHHHHhccccceEEEE
Confidence 45678888999999986655544332110 00111122345899999 566689999999988765 44433
Q ss_pred EcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCC--------------CCCC----C--ccEEEEecccccccCCchHH
Q 011901 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA--------------LNLS----E--VQFVVLDEADQMLSVGFAED 265 (475)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~--------------~~~~----~--~~~vViDE~H~~~~~~~~~~ 265 (475)
.|-.+........-..+||++||+..|...+-... .... . +=-|++||++.+-. ....
T Consensus 453 ~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS~ 530 (1394)
T KOG0298|consen 453 FGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSSA 530 (1394)
T ss_pred echhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHHH
Confidence 33322221111222348999999999976553220 1111 0 11389999996554 3455
Q ss_pred HHHHHHhCCCCCcEEEEccCCChhHHHH
Q 011901 266 VEVILERLPQNRQSMMFSATMPPWIRSL 293 (475)
Q Consensus 266 ~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 293 (475)
......+++ ..+.-+.|+||...+..+
T Consensus 531 ~a~M~~rL~-~in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 531 AAEMVRRLH-AINRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHhh-hhceeeecCCchhhhhhh
Confidence 555556664 456789999987655443
No 231
>PRK12377 putative replication protein; Provisional
Probab=96.85 E-value=0.0077 Score=54.64 Aligned_cols=46 Identities=11% Similarity=0.299 Sum_probs=27.9
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHH
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~ 192 (475)
.++++.|++|+|||..+ .++...+.+ .+..+ +.++..+|..++...
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~~--------~g~~v-~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLLA--------KGRSV-IVVTVPDVMSRLHES 147 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH--------cCCCe-EEEEHHHHHHHHHHH
Confidence 57999999999999754 334444432 23434 444555666655443
No 232
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.82 E-value=0.016 Score=66.11 Aligned_cols=127 Identities=16% Similarity=0.199 Sum_probs=76.8
Q ss_pred CCCcHHHHHhhhhHhcC--CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
..|++.|++|+..++.. +-++++|..|+|||.+. -.++..+... ....++.++.++||---+....+ .
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l----~~~~~~~V~glAPTgrAAk~L~e----~- 1035 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL----PESERPRVVGLGPTHRAVGEMRS----A- 1035 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh----hcccCceEEEECCcHHHHHHHHh----c-
Confidence 46999999999999975 45899999999999643 3333333210 11235679999999877765432 1
Q ss_pred CCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHH----HhCCCCCCCccEEEEecccccccCCchHHHHHHHHhC
Q 011901 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI----KRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (475)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l----~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~ 273 (475)
++.. .|..+|+... ..+......-+++||||+=.+ -...+..+++..
T Consensus 1036 -Gi~A------------------------~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv----~~~~m~~Ll~~~ 1086 (1747)
T PRK13709 1036 -GVDA------------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMV----GNTDMARAYALI 1086 (1747)
T ss_pred -Ccch------------------------hhHHHHhcccccccccccCCCCCCcEEEEEccccc----cHHHHHHHHHhh
Confidence 2111 1222222110 001111234579999999976 345566667666
Q ss_pred CC-CCcEEEEccC
Q 011901 274 PQ-NRQSMMFSAT 285 (475)
Q Consensus 274 ~~-~~~~i~~SAT 285 (475)
+. ..++|++.-+
T Consensus 1087 ~~~garvVLVGD~ 1099 (1747)
T PRK13709 1087 AAGGGRAVSSGDT 1099 (1747)
T ss_pred hcCCCEEEEecch
Confidence 54 5777776655
No 233
>PRK09183 transposase/IS protein; Provisional
Probab=96.80 E-value=0.033 Score=51.14 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=19.0
Q ss_pred HhcCCcEEEEcCCCCchhHHHHHH
Q 011901 133 AMQGRDMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~~ 156 (475)
+..+.++++.||+|+|||..+...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH
Confidence 445788999999999999755433
No 234
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.78 E-value=5.8e-05 Score=76.77 Aligned_cols=77 Identities=19% Similarity=0.405 Sum_probs=60.9
Q ss_pred chHHHHHHHHH-hccCCcEEEEecChhhHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHhc---CCCcEEEecCcccc
Q 011901 330 KPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD---GRFNILIATDVAAR 405 (475)
Q Consensus 330 ~~~~l~~l~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~h~~~~~~~r~~~~~~f~~---g~~~vlvaT~~~~~ 405 (475)
|..++..+++. ...|++++||..-....+.+..++........+.|..+..+|+..++.|.. .+...|.+|.+.+.
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~ 695 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGL 695 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccCCCCccceEEEeecccccC
Confidence 33444444443 346889999999999999999998766688899999999999999999983 46778889987665
Q ss_pred C
Q 011901 406 G 406 (475)
Q Consensus 406 G 406 (475)
|
T Consensus 696 g 696 (696)
T KOG0383|consen 696 G 696 (696)
T ss_pred C
Confidence 5
No 235
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.77 E-value=0.007 Score=54.55 Aligned_cols=44 Identities=14% Similarity=0.357 Sum_probs=25.0
Q ss_pred CccEEEEecccccccCC-chHHHHHHHHhCCCCCcEEEEccCCCh
Q 011901 245 EVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 245 ~~~~vViDE~H~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~ 288 (475)
..+++|+||+|.+.... +...+..++.........+++|++..+
T Consensus 90 ~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~ 134 (226)
T TIGR03420 90 QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAP 134 (226)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCCh
Confidence 34689999999876431 244555555544322224555655433
No 236
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.75 E-value=0.018 Score=56.07 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=41.6
Q ss_pred CCCCcHHHHHhhhhHh----cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHH
Q 011901 119 ISKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 193 (475)
+...+|-|-+-+..+. .+.+.++.+|+|+|||.+.+-.++.......+ ...+.++..-|..-.+....++
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~-----~~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD-----EHRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc-----ccceEEEecCcchHHHHHHHHH
Confidence 3456777876665544 45689999999999996655444444433222 2334666665554444444443
No 237
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.75 E-value=0.035 Score=54.84 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=33.8
Q ss_pred ccHHHHHHHHhCCCCCCCccEEEEecccccccC-CchHHHHHHHHhC-CCCCcEEEEccCCChhH
Q 011901 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERL-PQNRQSMMFSATMPPWI 290 (475)
Q Consensus 228 T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~-~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~ 290 (475)
++..+...+.. +.+.++|+||.+-+.... .....+..++... .+....+++|||.....
T Consensus 286 ~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~ 346 (424)
T PRK05703 286 DPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYED 346 (424)
T ss_pred CHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHH
Confidence 44445555543 446899999998764321 1223455555522 23345788999987643
No 238
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.74 E-value=0.018 Score=48.11 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=40.1
Q ss_pred CCCccEEEEecccccccCCc--hHHHHHHHHhCCCCCcEEEEccCCChhHHHHHH
Q 011901 243 LSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 295 (475)
...+++||+||+-...+.++ .+.+..+++..+....+|+.+-.+|+.+...+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999997766553 456777888888888888888888887665543
No 239
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.085 Score=52.77 Aligned_cols=64 Identities=16% Similarity=0.256 Sum_probs=33.1
Q ss_pred cHHHHHHHHhCCCCCCCccEEEEecccccccCC-chHHHHHHHHhCCCCCcEEEEccCCCh-hHHHHHHhh
Q 011901 229 PGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPP-WIRSLTNKY 297 (475)
Q Consensus 229 ~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~~~~~ 297 (475)
++.+...+.. +.+.++|+||.+-+..... ....+..+.. ......+++++++... ........+
T Consensus 416 ~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 416 AESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred HHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCChhHHHHHHHHH
Confidence 3444555543 4568899999998643211 1122222222 2234557788888753 333333333
No 240
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.74 E-value=0.009 Score=53.88 Aligned_cols=43 Identities=12% Similarity=0.303 Sum_probs=26.1
Q ss_pred CccEEEEecccccccCCchHHHHHHHHhCCCCCc-EEEEccCCCh
Q 011901 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ-SMMFSATMPP 288 (475)
Q Consensus 245 ~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~-~i~~SAT~~~ 288 (475)
+.+++|+||+|.+... ....+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4668999999987543 33445555554433333 4667776544
No 241
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.014 Score=56.02 Aligned_cols=128 Identities=13% Similarity=0.118 Sum_probs=61.9
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCC-CeEEEEcC-C-HHHHHHHHHHHHhhCCCCceEEEEcCcchh
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN-PLCLVLAP-T-RELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~-~~~lil~P-t-~~La~q~~~~~~~~~~~~~~~~~~~~~~~~ 212 (475)
+..+++.||||+|||.+....+...+.. .+ .++.++.. + +.-+.+....+.+.. ++.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~--------~G~~~V~lit~D~~R~ga~EqL~~~a~~~-gv~~---------- 197 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR--------FGASKVALLTTDSYRIGGHEQLRIFGKIL-GVPV---------- 197 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh--------cCCCeEEEEecccccccHHHHHHHHHHHc-CCce----------
Confidence 4568999999999998664443332222 12 23443332 2 222333333333322 1221
Q ss_pred HHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCc-hHHHHHHHHhCCCCCcEEEEccCCChhHH
Q 011901 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF-AEDVEVILERLPQNRQSMMFSATMPPWIR 291 (475)
Q Consensus 213 ~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~-~~~~~~i~~~~~~~~~~i~~SAT~~~~~~ 291 (475)
..+-+++.+...+.+ +.+.++|+||++-+.....+ ...+..+.....+...++++|||......
T Consensus 198 -----------~~~~~~~~l~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 198 -----------HAVKDGGDLQLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred -----------EecCCcccHHHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 122333334344432 55678899999975432111 22222222212223347889999866443
Q ss_pred -HHHHhh
Q 011901 292 -SLTNKY 297 (475)
Q Consensus 292 -~~~~~~ 297 (475)
.....|
T Consensus 263 ~evi~~f 269 (374)
T PRK14722 263 NEVVQAY 269 (374)
T ss_pred HHHHHHH
Confidence 333444
No 242
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.69 E-value=0.023 Score=53.94 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (475)
+.++++.|+||+|||..+. ++...+.. .+..|+++ +...|..+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~-aIa~~l~~--------~g~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSN-CIAKELLD--------RGKSVIYR-TADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHH-HHHHHHHH--------CCCeEEEE-EHHHHHHHH
Confidence 4789999999999998543 33444433 24555554 445554443
No 243
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.68 E-value=0.017 Score=50.25 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=32.7
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
+++.|++|+|||..++-.+...+. .|..++++.. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999766544444432 2556777754 56677777776655
No 244
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.62 E-value=0.018 Score=57.80 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=25.2
Q ss_pred CCccEEEEecccccccCC-chHHHHHHHHhCC-CCCcEEEEccCCChh
Q 011901 244 SEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPW 289 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~~~ 289 (475)
.+.+++++||+|.+.... ....+..++..+. ...++++.|.+++..
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~ 257 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKE 257 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHH
Confidence 357789999999876532 1233444444332 334555544444443
No 245
>PF13173 AAA_14: AAA domain
Probab=96.61 E-value=0.027 Score=45.60 Aligned_cols=36 Identities=8% Similarity=0.321 Sum_probs=25.1
Q ss_pred CccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 245 ~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
.-.+|++||+|.+.+ +...+..+.... ++.++++.+
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tg 96 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTG 96 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEc
Confidence 556799999999865 667777777755 445555543
No 246
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.60 E-value=0.016 Score=55.72 Aligned_cols=40 Identities=13% Similarity=0.275 Sum_probs=25.9
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEcc
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 284 (475)
...++||+||+|.+... ....+..+++..+....+|+.+.
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEeC
Confidence 45679999999987543 33445566666666666655443
No 247
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.59 E-value=0.019 Score=57.06 Aligned_cols=92 Identities=17% Similarity=0.183 Sum_probs=59.9
Q ss_pred CCCCCHHHH-HHHHHcCCCCCcHH----HHHhhhhHhcC--CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCe
Q 011901 103 KLDISQDIV-AALARRGISKLFPI----QKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (475)
Q Consensus 103 ~~~l~~~l~-~~l~~~~~~~l~~~----Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 175 (475)
+.+..++++ ..|.+..-.+++.+ |.+==+.|... +-++++|..|||||.+++.-+...+..++.... +..
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~---~k~ 262 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQ---AKP 262 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccc---cCc
Confidence 345555554 45555443444432 43333334433 458999999999999988777767766554432 334
Q ss_pred EEEEcCCHHHHHHHHHHHHhhC
Q 011901 176 CLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 176 ~lil~Pt~~La~q~~~~~~~~~ 197 (475)
++++.|++.+..-+.+.+-+++
T Consensus 263 vlvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 263 VLVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred eEEEcCcHHHHHHHHHhchhhc
Confidence 9999999999988777766654
No 248
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.56 E-value=0.017 Score=50.58 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=34.3
Q ss_pred CCccEEEEecccccccC-CchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHh
Q 011901 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNK 296 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 296 (475)
++.++|+||-+-+.... .....+..+++...+..-.+++|||...........
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~ 135 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA 135 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH
Confidence 45788999998764322 134566677777766667789999987754443333
No 249
>PLN03025 replication factor C subunit; Provisional
Probab=96.55 E-value=0.031 Score=53.27 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=23.1
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEE
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~ 282 (475)
...+++|+||+|.+... ....+...++..+....+++.
T Consensus 98 ~~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~il~ 135 (319)
T PLN03025 98 GRHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFALA 135 (319)
T ss_pred CCeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEEEE
Confidence 35789999999998543 233444555554444544443
No 250
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.54 E-value=0.0086 Score=53.55 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=29.4
Q ss_pred CCCccEEEEecccccccCC-chHHHHHHHHhCC-CCCcEEEEccCCChh
Q 011901 243 LSEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPW 289 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~~~ 289 (475)
+...+++++|++|.+.+.. ....+..++..+. .+.++|+.|..+|..
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 4578899999999986542 2334445555443 355777777666553
No 251
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.53 E-value=0.045 Score=46.13 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=23.8
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHH
Q 011901 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La 186 (475)
+++.|++|+|||..+...+. .... .+..++++.......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~-~~~~--------~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLAL-NIAT--------KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHH-HHHh--------cCCEEEEEECCcchH
Confidence 67899999999975533332 2211 255577766654443
No 252
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.47 E-value=0.014 Score=61.34 Aligned_cols=71 Identities=18% Similarity=0.136 Sum_probs=53.3
Q ss_pred CCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC
Q 011901 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 198 (475)
.|++-|.+++... ..+++|.|.+|||||.+...-+...+.... -...++|+++-|+..|.++.+++....+
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4889999999764 357999999999999876555544442210 1234699999999999999999987653
No 253
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.47 E-value=0.029 Score=55.93 Aligned_cols=108 Identities=12% Similarity=0.140 Sum_probs=57.8
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHH
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (475)
..+++.|++|+|||... .++...+... ..+.+++++.+ ..+..+....+....
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~------~~~~~v~yv~~-~~f~~~~~~~l~~~~------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN------FSDLKVSYMSG-DEFARKAVDILQKTH------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh------CCCCeEEEEEH-HHHHHHHHHHHHHhh-------------------
Confidence 35889999999999643 3333333221 22455666555 556555554443210
Q ss_pred HhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCC-chHHHHHHHHhCC-CCCcEEEEccCCCh
Q 011901 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPP 288 (475)
Q Consensus 217 ~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~~ 288 (475)
+.+..... .+.+.+++|+||+|.+.... ....+..++..+. ...|+|+.|-.+|.
T Consensus 195 -------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~ 251 (450)
T PRK14087 195 -------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPE 251 (450)
T ss_pred -------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 11111111 14567889999999876432 2344445555443 33456555554443
No 254
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.028 Score=48.02 Aligned_cols=89 Identities=18% Similarity=0.151 Sum_probs=49.5
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (475)
=.++.||+.||||...+ +.+.++.. .|.++++..|-.. ..+. ...+.-..|..
T Consensus 6 l~~i~gpM~SGKT~eLl----~r~~~~~~-----~g~~v~vfkp~iD----------~R~~-~~~V~Sr~G~~------- 58 (201)
T COG1435 6 LEFIYGPMFSGKTEELL----RRARRYKE-----AGMKVLVFKPAID----------TRYG-VGKVSSRIGLS------- 58 (201)
T ss_pred EEEEEccCcCcchHHHH----HHHHHHHH-----cCCeEEEEecccc----------cccc-cceeeeccCCc-------
Confidence 36889999999997433 33322222 2666888888321 1111 11111111111
Q ss_pred hhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc
Q 011901 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (475)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~ 257 (475)
..-++|-....+.+.+....... +.+.|.|||++-+
T Consensus 59 ---~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~ 94 (201)
T COG1435 59 ---SEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFF 94 (201)
T ss_pred ---ccceecCChHHHHHHHHhcccCC-CcCEEEEehhHhC
Confidence 13456667777777776543322 2789999999974
No 255
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.39 E-value=0.03 Score=45.33 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=12.9
Q ss_pred EEEEcCCCCchhHHH
Q 011901 139 MIGRARTGTGKTLAF 153 (475)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (475)
+++.||+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999744
No 256
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.38 E-value=0.02 Score=56.63 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=16.7
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~l 161 (475)
.+++.|++|+|||... .++...+
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l 160 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEI 160 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHH
Confidence 5799999999999744 3444444
No 257
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.36 E-value=0.021 Score=57.63 Aligned_cols=70 Identities=23% Similarity=0.159 Sum_probs=52.0
Q ss_pred HHHHHhhhhHhc-----C----CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHH
Q 011901 124 PIQKAVLEPAMQ-----G----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 124 ~~Q~~~i~~i~~-----~----~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 194 (475)
|+|+-.+..+.. | +.+++.-+=|.|||......++..+.-. ...+..+++.++++.-|..+++.++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-----g~~~~~i~~~A~~~~QA~~~f~~~~ 75 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-----GEPGAEIYCAANTRDQAKIVFDEAK 75 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-----CccCceEEEEeCCHHHHHHHHHHHH
Confidence 678877777662 2 3488889999999986655555555321 2346789999999999999999988
Q ss_pred hhCC
Q 011901 195 ESAP 198 (475)
Q Consensus 195 ~~~~ 198 (475)
....
T Consensus 76 ~~i~ 79 (477)
T PF03354_consen 76 KMIE 79 (477)
T ss_pred HHHH
Confidence 8764
No 258
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.36 E-value=0.086 Score=52.06 Aligned_cols=52 Identities=13% Similarity=0.263 Sum_probs=31.4
Q ss_pred ccEEEEecccccccC-CchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhh
Q 011901 246 VQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (475)
Q Consensus 246 ~~~vViDE~H~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 297 (475)
.++||+|.+-+.... ..-.++..+.....+..-++.++||........+..+
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 378999999554221 1334455555555566667888888766554444443
No 259
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.35 E-value=0.013 Score=54.71 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=25.5
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCCCh
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 288 (475)
++-.++.+||+|| |......++--.-.+..+++..||-.+
T Consensus 221 krkTilFiDEiHR-----FNksQQD~fLP~VE~G~I~lIGATTEN 260 (554)
T KOG2028|consen 221 KRKTILFIDEIHR-----FNKSQQDTFLPHVENGDITLIGATTEN 260 (554)
T ss_pred cceeEEEeHHhhh-----hhhhhhhcccceeccCceEEEecccCC
Confidence 4445689999999 555444443333345667888888543
No 260
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.35 E-value=0.021 Score=54.44 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=27.0
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEcc
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 284 (475)
...++||+||+|.+........+..+++..+.+..+++.|.
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 35678999999987333244556666777666666665443
No 261
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.33 E-value=0.046 Score=54.32 Aligned_cols=49 Identities=12% Similarity=0.235 Sum_probs=28.6
Q ss_pred CCCccEEEEecccccccCC-chHHHHHHHHhC-CCCCcEEEEccCCChhHH
Q 011901 243 LSEVQFVVLDEADQMLSVG-FAEDVEVILERL-PQNRQSMMFSATMPPWIR 291 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~ 291 (475)
+.+.+++++||+|.+.+.. ....+..++..+ ....++++.|-+++....
T Consensus 200 ~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 200 YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 3467889999999876542 233444444433 234566665555555443
No 262
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.33 E-value=0.25 Score=47.55 Aligned_cols=132 Identities=16% Similarity=0.201 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCC-HHHHHHHHHHHHhhCCCCceEEEEcCcchhHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT-RELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt-~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (475)
++.+.+.||||.|||.+..-.+...... .....-++|-..| |.=|..+.+.+.+.. ++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~------~~~~kVaiITtDtYRIGA~EQLk~Ya~im-~v-------------- 261 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML------KKKKKVAIITTDTYRIGAVEQLKTYADIM-GV-------------- 261 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh------ccCcceEEEEeccchhhHHHHHHHHHHHh-CC--------------
Confidence 5678999999999997654333222211 0112223444443 333333333333322 12
Q ss_pred HHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc-cCCchHHHHHHHHhCCCCCcEEEEccCCCh-hHHH
Q 011901 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPP-WIRS 292 (475)
Q Consensus 215 ~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~ 292 (475)
+=.++-+|.-|...+.. +.+.++|.||=+-+-. +.....++..++..-.+.--.+.+|||... .+..
T Consensus 262 -------p~~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 262 -------PLEVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred -------ceEEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 23445677777766654 7778999999887632 222344555555544444456888999754 3344
Q ss_pred HHHhhcC
Q 011901 293 LTNKYLK 299 (475)
Q Consensus 293 ~~~~~~~ 299 (475)
....|..
T Consensus 331 i~~~f~~ 337 (407)
T COG1419 331 IIKQFSL 337 (407)
T ss_pred HHHHhcc
Confidence 4444443
No 263
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.30 E-value=0.032 Score=50.99 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=34.0
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHH
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 194 (475)
++.++++.|++|+|||..+...+...+ + .+.-++++++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~---------~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-K---------AGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H---------cCCeEEEEEHHHHHHHHHHHHh
Confidence 667999999999999986644333333 3 2334666777788777665553
No 264
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.024 Score=54.76 Aligned_cols=47 Identities=13% Similarity=0.216 Sum_probs=31.5
Q ss_pred CccEEEEecccccccCC-chHHHHHHHHhCCC-CCcEEEEccCCChhHH
Q 011901 245 EVQFVVLDEADQMLSVG-FAEDVEVILERLPQ-NRQSMMFSATMPPWIR 291 (475)
Q Consensus 245 ~~~~vViDE~H~~~~~~-~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~~ 291 (475)
+++++++|.++.+.+.. ....+-.++..+.. +.|+++.|..+|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 78889999999887652 34445555666544 3477777777665543
No 265
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.26 E-value=0.046 Score=54.43 Aligned_cols=49 Identities=12% Similarity=0.280 Sum_probs=27.0
Q ss_pred CccEEEEecccccccCC-chHHHHHHHHhCC-CCCcEEEEccCCChhHHHH
Q 011901 245 EVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPWIRSL 293 (475)
Q Consensus 245 ~~~~vViDE~H~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~ 293 (475)
+.+++++||+|.+.+.. ....+..++..+. ...++++.|-..+..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 46789999999876542 1233444444432 2345555554444444333
No 266
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.24 E-value=0.056 Score=46.54 Aligned_cols=146 Identities=17% Similarity=0.117 Sum_probs=77.2
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHH
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (475)
....+++.+++|.|||.+++--++.++. .|.+++++.=.+--..+-...+-+..+++... ..+......
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g---------~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~--~~g~~~~~~ 89 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG---------HGKKVGVVQFIKGAWSTGERNLLEFGGGVEFH--VMGTGFTWE 89 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH---------CCCeEEEEEEecCCCccCHHHHHhcCCCcEEE--ECCCCCccc
Confidence 4457999999999999988877777763 37778877533322111111111222222222 111110000
Q ss_pred HHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCc--hHHHHHHHHhCCCCCcEEEEccCCChhHHH
Q 011901 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRS 292 (475)
Q Consensus 215 ~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 292 (475)
. ...+--.......+.... ..+.-..+++||+||+-...+.++ ...+..+++..|+...+|+..-.+|+.+..
T Consensus 90 ~----~~~~e~~~~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 90 T----QDRERDIAAAREGWEEAK-RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred C----CCcHHHHHHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 0 000000000111111111 112245688999999998777764 456677777777777777776777776655
Q ss_pred HHHh
Q 011901 293 LTNK 296 (475)
Q Consensus 293 ~~~~ 296 (475)
.+..
T Consensus 165 ~ADl 168 (191)
T PRK05986 165 AADL 168 (191)
T ss_pred hCch
Confidence 5443
No 267
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.24 E-value=0.022 Score=49.78 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=29.0
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccC
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 285 (475)
.-+.+.||+||||.|.+. ..+.+++.++...+.+++.+..-+
T Consensus 111 ~grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CCceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 367889999999998653 455666666666666666554444
No 268
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.24 E-value=0.027 Score=59.61 Aligned_cols=71 Identities=20% Similarity=0.149 Sum_probs=52.8
Q ss_pred CCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC
Q 011901 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 198 (475)
.|++-|.+++... ..+++|.|..|||||.+..--+...+.... .....+++++.|+..+.+..+++.+..+
T Consensus 1 ~Ln~~Q~~av~~~--~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-----~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 1 KLNPQQQEAVEYV--TGPCLVLAGAGSGKTRVITNKIAYLIQNCG-----YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 3789999998763 458999999999999876555554442211 1234589999999999999999987653
No 269
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.21 E-value=0.015 Score=55.21 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=28.0
Q ss_pred CCcHHHHHhhhhHhcCC----cEEEEcCCCCchhHHHHH
Q 011901 121 KLFPIQKAVLEPAMQGR----DMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~----~~li~~~tGsGKT~~~~~ 155 (475)
.++|||...+..+.... ..++.||.|+|||..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 35799999999888642 388999999999976543
No 270
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.19 E-value=0.041 Score=64.43 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=45.2
Q ss_pred CCCcHHHHHhhhhHhcC--CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHH
Q 011901 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (475)
..|++.|++|+..++.+ +-++++|..|+|||.+. ..++..+..... ..+..++.++||-.-+.+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l-~~~~~~i~~~~~----~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTML-ESRYKPVLQAFE----SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhH-HHHHHHHHHHHH----hcCCeEEEEeChHHHHHHH
Confidence 46999999999999876 44788999999999644 222222211111 2367799999997776654
No 271
>CHL00181 cbbX CbbX; Provisional
Probab=96.18 E-value=0.09 Score=49.10 Aligned_cols=20 Identities=35% Similarity=0.230 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCchhHHHHH
Q 011901 136 GRDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~ 155 (475)
+.++++.||+|+|||.++-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45689999999999986643
No 272
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.18 E-value=0.022 Score=55.73 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=26.1
Q ss_pred CcHHHHHhhhhHhcCCcEEEEcCCCCchhHHH
Q 011901 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
+-......+..+..++++++.|++|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 44556667777778899999999999999765
No 273
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.16 E-value=0.021 Score=60.79 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=53.9
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 198 (475)
..|++-|.+++... ..+++|.|..|||||.+...-+. ++.... .-...++|+++-|+..|..+.+++.+..+
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria-~Li~~~----~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIA-WLLSVE----NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHH-HHHHcC----CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 46899999999764 35899999999999987654444 333210 11234699999999999999999988754
No 274
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.14 E-value=0.06 Score=49.67 Aligned_cols=17 Identities=41% Similarity=0.448 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.++++.||+|+|||.++
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 46899999999999865
No 275
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.10 E-value=0.025 Score=53.40 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=28.1
Q ss_pred CCCcHHHHHhhhhHhc----CC---cEEEEcCCCCchhHHHHH
Q 011901 120 SKLFPIQKAVLEPAMQ----GR---DMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~----~~---~~li~~~tGsGKT~~~~~ 155 (475)
..++|||..++..+.. ++ -.++.||.|+||+..+..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~ 45 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA 45 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 4688999999987763 32 389999999999976543
No 276
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.08 E-value=0.028 Score=59.93 Aligned_cols=72 Identities=17% Similarity=0.083 Sum_probs=53.8
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 198 (475)
..|++-|.+++... ..+++|.|..|||||.+...-+...+.... -....+|+++-|+..|.++.+++.+..+
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVEN-----ASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC-----CChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 35999999999754 358999999999999876544443332111 1234699999999999999999988754
No 277
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.0082 Score=59.31 Aligned_cols=18 Identities=33% Similarity=0.224 Sum_probs=14.9
Q ss_pred cEEEEcCCCCchhHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~ 155 (475)
.+++.||.|+|||.++.+
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999986643
No 278
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.03 E-value=0.031 Score=47.36 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=30.3
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCCCh
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 288 (475)
...+++|+||+|.|... ....+.+.++.-+.+..++++|..+..
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 46889999999998654 455566666666777777777766544
No 279
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.02 E-value=0.053 Score=53.44 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=17.5
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHH
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l 161 (475)
.++++.|++|+|||.+. -.++..+
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 56999999999999744 3344443
No 280
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.98 E-value=0.031 Score=59.05 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=76.3
Q ss_pred ccCccchHH-HHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-----cCCcccccCCCCHHHHHHHHHHHhcCCCcEEE
Q 011901 325 TSMYEKPSI-IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (475)
Q Consensus 325 ~~~~~~~~~-l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 398 (475)
.....|... +..++.....|.+++|.+|+..-+...++.+.+ ++++..+||+++..+|..++..+.+|+.+|+|
T Consensus 290 ~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvV 369 (681)
T PRK10917 290 DVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVI 369 (681)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEE
Confidence 344455543 334445556788999999999999988877754 36788999999999999999999999999999
Q ss_pred ecC-ccccCCCCCCCCEEEEcCCCC
Q 011901 399 ATD-VAARGLDVPNVDLIIHYELPN 422 (475)
Q Consensus 399 aT~-~~~~Gidi~~~~~vi~~~~p~ 422 (475)
+|. .+...+.+.++.+||+-....
T Consensus 370 gT~~ll~~~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 370 GTHALIQDDVEFHNLGLVIIDEQHR 394 (681)
T ss_pred chHHHhcccchhcccceEEEechhh
Confidence 996 456677888999988655443
No 281
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.072 Score=53.28 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=44.7
Q ss_pred hhhhhhccccccccCCCCCccCCcccCCCCCHHHHHHHHHc---CCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHH
Q 011901 77 WQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
|..+...+..-...+.....|..+|++.+--.++...|.-. .+..+-.++.-.+.. -..+|++||+|||||+.+
T Consensus 486 F~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~---PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 486 FEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA---PSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred HHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC---CCceEEeCCCCccHHHHH
Confidence 33343333333334445556788899988888887777642 333333333222221 356999999999999854
No 282
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.96 E-value=0.12 Score=54.68 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=17.0
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHh
Q 011901 139 MIGRARTGTGKTLAFGIPILDKIIK 163 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~l~~ 163 (475)
++|.|+||+|||.+. -.++..+..
T Consensus 784 LYIyG~PGTGKTATV-K~VLrELqe 807 (1164)
T PTZ00112 784 LYISGMPGTGKTATV-YSVIQLLQH 807 (1164)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHHH
Confidence 469999999999765 344455543
No 283
>PRK06620 hypothetical protein; Validated
Probab=95.96 E-value=0.026 Score=50.21 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..++++||+|||||...
T Consensus 45 ~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT 61 (214)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999744
No 284
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.95 E-value=0.17 Score=42.87 Aligned_cols=139 Identities=19% Similarity=0.212 Sum_probs=66.8
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh
Q 011901 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (475)
+.+....|-|||.+++--++.++ +.|.+|+++.=.+.-...=...+-+.++++.... +|..... .....
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~---------G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~-~g~~f~~-~~~~~ 74 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA---------GHGMRVLIVQFLKGGRYSGELKALKKLPNVEIER-FGKGFVW-RMNEE 74 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH---------CTT--EEEEESS--SS--HHHHHHGGGT--EEEE---TT-----GGGH
T ss_pred EEEEeCCCCCchHHHHHHHHHHH---------hCCCEEEEEEEecCCCCcCHHHHHHhCCeEEEEE-cCCcccc-cCCCc
Confidence 56677889999998888888776 5588899987655511112222223333332221 1111000 00000
Q ss_pred hcCCcEEEEccHHHHHHHHh--CCCCCCCccEEEEecccccccCCc--hHHHHHHHHhCCCCCcEEEEccCCChhHHHHH
Q 011901 219 DYGVDAVVGTPGRVIDLIKR--NALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294 (475)
Q Consensus 219 ~~~~~Ilv~T~~~l~~~l~~--~~~~~~~~~~vViDE~H~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 294 (475)
. .+ .......+.. ..+.-..+++||+||+-...+.++ ...+..+++..+....+|+..-.+++.+...+
T Consensus 75 ~--~~-----~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 75 E--ED-----RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp H--HH-----HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred H--HH-----HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 0 00 1111111111 123345789999999998777664 35677778877778888887777777666554
Q ss_pred H
Q 011901 295 N 295 (475)
Q Consensus 295 ~ 295 (475)
.
T Consensus 148 D 148 (172)
T PF02572_consen 148 D 148 (172)
T ss_dssp S
T ss_pred C
Confidence 3
No 285
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.053 Score=54.23 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCchhHHHHHH
Q 011901 137 RDMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~ 156 (475)
+..|+.||.|+|||.++.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~Aril 55 (491)
T PRK14964 36 QSILLVGASGVGKTTCARII 55 (491)
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 36999999999999866544
No 286
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.043 Score=55.52 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=25.0
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
.+++++||||+|.+.... ...+.+.++..++...+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 467899999999886542 233444555555566566544
No 287
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.93 E-value=0.041 Score=58.74 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=26.2
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
..++++||||+|+|... ....+.++++..+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 57889999999998653 3344555556555666566654
No 288
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.062 Score=52.16 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=22.4
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
...+++|+||+|.+.... ...+.+.++..+....+++.|
T Consensus 118 ~~~kviIIDEa~~l~~~a-~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHS-FNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHH-HHHHHHHHhcCCCCeEEEEEc
Confidence 457899999999975431 222333444444444455543
No 289
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.91 E-value=0.075 Score=49.27 Aligned_cols=32 Identities=19% Similarity=0.078 Sum_probs=22.4
Q ss_pred CcHHHHHhhhhHh----cCC-cEEEEcCCCCchhHHH
Q 011901 122 LFPIQKAVLEPAM----QGR-DMIGRARTGTGKTLAF 153 (475)
Q Consensus 122 l~~~Q~~~i~~i~----~~~-~~li~~~tGsGKT~~~ 153 (475)
+++.+.+++..+. .+. .+++.|++|+|||..+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 5566666666543 223 4889999999999754
No 290
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.91 E-value=0.038 Score=50.99 Aligned_cols=120 Identities=15% Similarity=0.247 Sum_probs=60.5
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHh-hhhhc--CCCCCCeEEEEcCCHHHHHHHHHHHHhhC-CCCceEEEEcCcchh
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIK-FNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGTPIS 212 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~-~~~~~--~~~~~~~~lil~Pt~~La~q~~~~~~~~~-~~~~~~~~~~~~~~~ 212 (475)
.++++.|+||-|||... .+..+ +.... ....-|-+.+-+|...-....+..+-..+ -+.+. .....
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~-----~~~~~ 131 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP-----RDRVA 131 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC-----CCCHH
Confidence 47999999999999733 23222 11111 11122456666677666666666554432 11111 00100
Q ss_pred HHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCch--HHHHHHHHhCCCCCcE-EEEccC
Q 011901 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA--EDVEVILERLPQNRQS-MMFSAT 285 (475)
Q Consensus 213 ~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~--~~~~~i~~~~~~~~~~-i~~SAT 285 (475)
... ....+++. --+++++||||.|.++..... ..+...++.+.+..++ ++.-+|
T Consensus 132 ~~~--------------~~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 132 KLE--------------QQVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred HHH--------------HHHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 000 01113333 346788999999998765332 2344555666554443 233355
No 291
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.90 E-value=0.034 Score=62.73 Aligned_cols=124 Identities=20% Similarity=0.193 Sum_probs=78.2
Q ss_pred CCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCC
Q 011901 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 200 (475)
++|+-|.+++.. .+.+++|.|..|||||.+..--++..+... ..-.++++++=|+..|..+.+++.+.....
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~ 72 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG------VDIDRLLVVTFTNAAAREMKERIEEALQKA 72 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC------CCHhhEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 368999999983 578999999999999998776677666542 112359999999999998888877654211
Q ss_pred ceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCC--CccEEEEecccc
Q 011901 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLS--EVQFVVLDEADQ 256 (475)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~--~~~~vViDE~H~ 256 (475)
-. .........+.+..-...-|+|.+.|...+.+.....- +..+=|.||...
T Consensus 73 ~~----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 LQ----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred Hh----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00 00011111122222246678999988755544332111 234556887774
No 292
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.89 E-value=0.31 Score=48.52 Aligned_cols=104 Identities=16% Similarity=0.220 Sum_probs=82.2
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh
Q 011901 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (475)
.+-+.-+++||+..-++++.+.+.. +-.|.++|.+-+.+-|.|.+.++. .+.++.+.+++|..+........
T Consensus 360 ~V~QelvF~gse~~K~lA~rq~v~~-------g~~PP~lIfVQs~eRak~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~ 431 (593)
T KOG0344|consen 360 TVDQELVFCGSEKGKLLALRQLVAS-------GFKPPVLIFVQSKERAKQLFEELE-IYDNINVDVIHGERSQKQRDETM 431 (593)
T ss_pred hhhhhheeeecchhHHHHHHHHHhc-------cCCCCeEEEEecHHHHHHHHHHhh-hccCcceeeEecccchhHHHHHH
Confidence 3445567899999888888877755 356789999999999999999997 66789999999987655543333
Q ss_pred ----hcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccc
Q 011901 219 ----DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (475)
Q Consensus 219 ----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~ 256 (475)
.+...++||| +++.++ +++.++++||-++.-.
T Consensus 432 ~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 432 ERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred HHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 2458999999 888887 6799999999976654
No 293
>PRK04195 replication factor C large subunit; Provisional
Probab=95.86 E-value=0.045 Score=55.36 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
.+.+++.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357999999999999754
No 294
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.046 Score=56.07 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=24.1
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
...+++||||+|++... ....+.+.++..+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~-A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH-SFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhcCCCCcEEEEEE
Confidence 45789999999987544 2334445555545455555543
No 295
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.81 E-value=0.067 Score=55.13 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=25.9
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
+...+++||||+|.+... -...+.+.++..+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~-a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHH-HHHHHHHHHHhCCCCeEEEEEe
Confidence 457889999999998543 2334444455555566666654
No 296
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.81 E-value=0.26 Score=45.33 Aligned_cols=129 Identities=11% Similarity=0.172 Sum_probs=67.7
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcC-C-H-HHHHHHHHHHHhhCCCCceEEEEcCcch
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP-T-R-ELAKQVEKEFHESAPSLDTICVYGGTPI 211 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~P-t-~-~La~q~~~~~~~~~~~~~~~~~~~~~~~ 211 (475)
.+..+.+.|++|+|||..+...+.. +.. .+..+.++.- + + ....|+....... ++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~--------~~~~v~~i~~D~~ri~~~~ql~~~~~~~--~~----------- 131 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHG--------KKKTVGFITTDHSRIGTVQQLQDYVKTI--GF----------- 131 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHH--------cCCeEEEEecCCCCHHHHHHHHHHhhhc--Cc-----------
Confidence 3457899999999999865443322 211 1334444443 2 2 4555554433222 11
Q ss_pred hHHHHHhhcCCcEEE-EccHHHHHHHHhCCCCCCCccEEEEecccccccC-CchHHHHHHHHhCCCCCcEEEEccCCCh-
Q 011901 212 SHQMRALDYGVDAVV-GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPP- 288 (475)
Q Consensus 212 ~~~~~~~~~~~~Ilv-~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~- 288 (475)
.+.. .+++.+...+..-. ...++++|++|-+=+.... ..-..+..++....+..-++.+|||...
T Consensus 132 -----------~~~~~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 132 -----------EVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred -----------eEEecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 2221 24444444443210 1236789999999775321 1233444555544444456789998755
Q ss_pred hHHHHHHhh
Q 011901 289 WIRSLTNKY 297 (475)
Q Consensus 289 ~~~~~~~~~ 297 (475)
........|
T Consensus 200 d~~~~~~~f 208 (270)
T PRK06731 200 DMIEIITNF 208 (270)
T ss_pred HHHHHHHHh
Confidence 445555554
No 297
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.80 E-value=0.064 Score=56.52 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=24.4
Q ss_pred CccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCCCh
Q 011901 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 245 ~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 288 (475)
...++++||+|++.. .....++..+. +.++++.++|-.+
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~lE-~g~IiLI~aTTen 147 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWVE-NGTITLIGATTEN 147 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHhc-CceEEEEEecCCC
Confidence 456899999999632 23334444443 4567777777543
No 298
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.80 E-value=0.062 Score=53.23 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=22.6
Q ss_pred CccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCC
Q 011901 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 245 ~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 286 (475)
...++++||+|++.. .....++..+.. ..++++.+|.
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le~-~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVED-GTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhhc-CcEEEEEeCC
Confidence 456899999999632 333444555543 4556666653
No 299
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.80 E-value=0.13 Score=43.56 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=39.1
Q ss_pred CCCccEEEEecccccccCCc--hHHHHHHHHhCCCCCcEEEEccCCChhHHHHHH
Q 011901 243 LSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 295 (475)
-..+++||+||+-...+.++ ...+..+++..|+...+|+..-.+|+.+..++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 35788999999997776653 356677788877787888877777776655543
No 300
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.79 E-value=0.04 Score=56.17 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=28.9
Q ss_pred CCCccEEEEecccccccCC-chHHHHHHHHhCCC-CCcEEEEccCCChh
Q 011901 243 LSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQ-NRQSMMFSATMPPW 289 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~-~~~~~~~i~~~~~~-~~~~i~~SAT~~~~ 289 (475)
+.++++|+|||+|.+.+.. ....+..+++.+.. +.++|+.|-.++..
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 4467899999999886543 23444455555533 46666655554443
No 301
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.76 E-value=0.061 Score=56.10 Aligned_cols=91 Identities=19% Similarity=0.266 Sum_probs=74.6
Q ss_pred ccchHHHHHHHHHh-ccCCcEEEEecChhhHHHHHHHHHccCC---cccccCCCCHHHHHHHHHHHhcCCCcEEEecCcc
Q 011901 328 YEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAKSYN---CEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (475)
Q Consensus 328 ~~~~~~l~~l~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~---~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 403 (475)
..|.+.+..++.+. ..|+++||.+|.+..+..+.+.|.+.++ +..+|+++++.+|.+.+....+|+.+|+|.|-.+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 46777777776654 4688999999999999999999987654 7889999999999999999999999999999643
Q ss_pred ccCCCCCCCCEEEEcC
Q 011901 404 ARGLDVPNVDLIIHYE 419 (475)
Q Consensus 404 ~~Gidi~~~~~vi~~~ 419 (475)
- =.-+++...||..+
T Consensus 251 v-FaP~~~LgLIIvdE 265 (665)
T PRK14873 251 V-FAPVEDLGLVAIWD 265 (665)
T ss_pred E-EeccCCCCEEEEEc
Confidence 2 34667788877543
No 302
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.73 E-value=0.1 Score=53.55 Aligned_cols=39 Identities=13% Similarity=0.321 Sum_probs=24.5
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhC---CCCCcEEEEccC
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERL---PQNRQSMMFSAT 285 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~---~~~~~~i~~SAT 285 (475)
...++++||||+|+|... ..+.+++.+ +.+..+|+.|--
T Consensus 122 ~gr~KViIIDEah~Ls~~----AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNH----AFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred cCCceEEEEEChHhcCHH----HHHHHHHhhccCCCCceEEEEeCC
Confidence 346789999999998543 334444444 445556665543
No 303
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.73 E-value=0.037 Score=52.23 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=41.3
Q ss_pred HHHHHcCCCCCcHHHHHhhhhHh-cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHH
Q 011901 112 AALARRGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 112 ~~l~~~~~~~l~~~Q~~~i~~i~-~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
+.+.+.|. +++.|.+.+..+. .+++++++|+||||||. ++-+++..+.+. ..+.+++.+=.+.+|
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~------~~~~rivtiEd~~El 186 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVAS------APEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcC------CCCceEEEecCCccc
Confidence 34455554 5677877776655 45789999999999995 445555554321 123456666666665
No 304
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.70 E-value=0.029 Score=56.24 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.||+|+|||..+
T Consensus 217 ~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIA 233 (512)
T ss_pred cceEEECCCCCcHHHHH
Confidence 57999999999999744
No 305
>PTZ00293 thymidine kinase; Provisional
Probab=95.68 E-value=0.077 Score=46.55 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=23.3
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCC
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (475)
+=-++.||++||||.-.+-.+..... .+.+++++-|.
T Consensus 5 ~i~vi~GpMfSGKTteLLr~i~~y~~---------ag~kv~~~kp~ 41 (211)
T PTZ00293 5 TISVIIGPMFSGKTTELMRLVKRFTY---------SEKKCVVIKYS 41 (211)
T ss_pred EEEEEECCCCChHHHHHHHHHHHHHH---------cCCceEEEEec
Confidence 33578999999999644333322221 25568888884
No 306
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.67 E-value=0.035 Score=50.04 Aligned_cols=53 Identities=9% Similarity=0.058 Sum_probs=32.8
Q ss_pred hcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
..+.-+++.|++|+|||..++-.+.. ..+ ++..+++++. .+-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~--------~g~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQ--------NGYSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHh--------CCCcEEEEeC-CCCHHHHHHHHHHh
Confidence 34567999999999999754333333 322 2556788884 43445555555444
No 307
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.67 E-value=0.15 Score=53.03 Aligned_cols=146 Identities=19% Similarity=0.233 Sum_probs=82.6
Q ss_pred HHHcCCCCCcHHHHHhhhhHhcCC--cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHH
Q 011901 114 LARRGISKLFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (475)
Q Consensus 114 l~~~~~~~l~~~Q~~~i~~i~~~~--~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (475)
+.....+....-|.+.+..++... -+++.|+-|=|||.+.-+++ ..+.+.. ....+++.+|+.+-++..++
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~-~~~~~~~------~~~~iiVTAP~~~nv~~Lf~ 279 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIAL-AAAARLA------GSVRIIVTAPTPANVQTLFE 279 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHH-HHHHHhc------CCceEEEeCCCHHHHHHHHH
Confidence 444333444444444555555543 58899999999998877766 3332211 14579999999999888877
Q ss_pred HHHhhCCCC--ceEEEEcCcchhHHHHHh-hcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHH
Q 011901 192 EFHESAPSL--DTICVYGGTPISHQMRAL-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268 (475)
Q Consensus 192 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~ 268 (475)
.+.+-+..+ +..+...... ..... .....|=+-+|..-. ..-+++|||||=.+ -...+..
T Consensus 280 fa~~~l~~lg~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plplL~~ 342 (758)
T COG1444 280 FAGKGLEFLGYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLPLLHK 342 (758)
T ss_pred HHHHhHHHhCCcccccccccc---ceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChHHHHH
Confidence 665533211 1111100000 00000 112334455554322 11567999999876 4555666
Q ss_pred HHHhCCCCCcEEEEccCCC
Q 011901 269 ILERLPQNRQSMMFSATMP 287 (475)
Q Consensus 269 i~~~~~~~~~~i~~SAT~~ 287 (475)
++..+ +.++||.|+.
T Consensus 343 l~~~~----~rv~~sTTIh 357 (758)
T COG1444 343 LLRRF----PRVLFSTTIH 357 (758)
T ss_pred HHhhc----CceEEEeeec
Confidence 65554 4688899984
No 308
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.66 E-value=0.048 Score=58.27 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=53.9
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 198 (475)
..|++-|.+++... ..+++|.|..|||||.+..--+...+.+.. -...++|+++-|+..|..+.+++.+..+
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-----i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-----VAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-----CCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 36899999999764 458999999999999876555544442211 1124699999999999999999887754
No 309
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.66 E-value=0.066 Score=55.69 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=24.1
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
..++++||||+|.|.... ...+.+.++.-+.+..+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEE
Confidence 467899999999986542 233444555555555555544
No 310
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.64 E-value=0.23 Score=47.27 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=24.9
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
...++|++||+|.+... ....+..+++..+....+|+.+
T Consensus 101 ~~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 101 APFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CCceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 34678999999987543 2344555556555566666544
No 311
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.62 E-value=0.16 Score=50.66 Aligned_cols=148 Identities=12% Similarity=0.053 Sum_probs=85.8
Q ss_pred CCCCcHHHHHhhhhHhc------C----CcEEEEcCCCCchhHHHHH-HHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHH
Q 011901 119 ISKLFPIQKAVLEPAMQ------G----RDMIGRARTGTGKTLAFGI-PILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~------~----~~~li~~~tGsGKT~~~~~-~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (475)
++.+-|||.-++..+.. + +..+|..|-+-|||..+.. .+...+..+ ..+....+++|+.+-+.
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~------~~~~~~~i~A~s~~qa~ 132 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW------RSGAGIYILAPSVEQAA 132 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh------hcCCcEEEEeccHHHHH
Confidence 45789999999998872 1 3479999999999975542 233333332 34677999999999999
Q ss_pred HHHHHHHhhCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHH---HHHHh--CCCCCCCccEEEEecccccccCCc
Q 011901 188 QVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI---DLIKR--NALNLSEVQFVVLDEADQMLSVGF 262 (475)
Q Consensus 188 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~---~~l~~--~~~~~~~~~~vViDE~H~~~~~~~ 262 (475)
+.+..++....... + .........+....++.... ..+.. +..+-.+..+.|+||.|...+.+
T Consensus 133 ~~F~~ar~mv~~~~--------~---l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~- 200 (546)
T COG4626 133 NSFNPARDMVKRDD--------D---LRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE- 200 (546)
T ss_pred HhhHHHHHHHHhCc--------c---hhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-
Confidence 99988877653222 0 00011111222223332222 22211 22334567789999999864431
Q ss_pred hHHHHHHHHhC--CCCCcEEEEccC
Q 011901 263 AEDVEVILERL--PQNRQSMMFSAT 285 (475)
Q Consensus 263 ~~~~~~i~~~~--~~~~~~i~~SAT 285 (475)
..+..+..-+ .++.+++..|..
T Consensus 201 -~~~~~~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 201 -DMYSEAKGGLGARPEGLVVYITTS 224 (546)
T ss_pred -HHHHHHHhhhccCcCceEEEEecC
Confidence 2233333322 345667776653
No 312
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.62 E-value=0.057 Score=52.19 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=27.2
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCC
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 286 (475)
....+++||||+|.|... ....+.+.++.-+....++++|..+
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 356789999999987543 3344455555555555566666554
No 313
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.60 E-value=0.038 Score=56.33 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=22.5
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
...+++|+||+|.|... ....+...++.-+...-+|++|
T Consensus 118 ~~~KVIIIDEad~Lt~~-A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTS-AWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCHH-HHHHHHHHHHhCCCcEEEEEEC
Confidence 45788999999987432 2233444444444444444444
No 314
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.59 E-value=0.059 Score=51.40 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=27.0
Q ss_pred CcHHHHHhhhhHhcC-----CcEEEEcCCCCchhHHHHHHH
Q 011901 122 LFPIQKAVLEPAMQG-----RDMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~-----~~~li~~~tGsGKT~~~~~~~ 157 (475)
++|||...+..+..- +..++.||.|.||+..+...+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 468888888877642 348899999999998664433
No 315
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.083 Score=53.64 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=25.3
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
....+++||||+|++... ....+.+.++..+....+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 346789999999997543 2334445555555555555544
No 316
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.56 E-value=0.14 Score=52.51 Aligned_cols=70 Identities=13% Similarity=0.067 Sum_probs=47.1
Q ss_pred CCcHHHHHhhhhHh---cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 121 KLFPIQKAVLEPAM---QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~---~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
-+.|.=.+=++.+. +.+-.++.+|=|.|||.+..+.+...+ .. .+..+++.+|...-+.++++.++..+
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La-~f-------~Gi~IlvTAH~~~ts~evF~rv~~~l 240 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMI-SF-------LEIDIVVQAQRKTMCLTLYNRVETVV 240 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHH-Hh-------cCCeEEEECCChhhHHHHHHHHHHHH
Confidence 34454444444444 345578899999999976654444333 21 25679999999999999888876655
Q ss_pred C
Q 011901 198 P 198 (475)
Q Consensus 198 ~ 198 (475)
.
T Consensus 241 e 241 (752)
T PHA03333 241 H 241 (752)
T ss_pred H
Confidence 3
No 317
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.56 E-value=0.1 Score=47.31 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=36.2
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
|..+++.|++|+|||..++-.+...+. .|..+++++ +.+-..|+.+.+..+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~---------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQ---------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH---------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 467999999999999866555554442 255677777 4566677777766554
No 318
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.53 E-value=0.11 Score=53.91 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=25.2
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
....+++||||+|.+... ....+.+.++.-+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~-A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHH-HHHHHHHHHHhCCCCcEEEEEe
Confidence 346789999999987543 2334455555555566566554
No 319
>PHA00729 NTP-binding motif containing protein
Probab=95.51 E-value=0.1 Score=46.37 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=14.3
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
++++.|++|+|||..+
T Consensus 19 nIlItG~pGvGKT~LA 34 (226)
T PHA00729 19 SAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 6999999999999755
No 320
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.50 E-value=0.1 Score=49.37 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=26.1
Q ss_pred CcHHHHHhhhhHh----cC---CcEEEEcCCCCchhHHHHHHH
Q 011901 122 LFPIQKAVLEPAM----QG---RDMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 122 l~~~Q~~~i~~i~----~~---~~~li~~~tGsGKT~~~~~~~ 157 (475)
++|||...+..+. +| +-.++.||.|.||+..+..-+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A 45 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA 45 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH
Confidence 4688888877665 33 347899999999997664433
No 321
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.49 E-value=0.14 Score=51.14 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=51.1
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (475)
|.-+++.|++|+|||...+..+. .+.+ .+.+++++.- .+-..|+......+..+.....+...
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~-~~a~--------~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~~l~~~~e------- 142 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAA-RLAA--------AGGKVLYVSG-EESASQIKLRAERLGLPSDNLYLLAE------- 142 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-HHHh--------cCCeEEEEEc-cccHHHHHHHHHHcCCChhcEEEeCC-------
Confidence 35589999999999974433333 3321 2556888875 45556776666554322111111100
Q ss_pred HHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccc
Q 011901 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~ 259 (475)
...+.+...+.. .+.++||+|+++.+..
T Consensus 143 -----------~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 143 -----------TNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred -----------CCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 112333343332 3567899999997654
No 322
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.45 E-value=0.039 Score=51.24 Aligned_cols=57 Identities=21% Similarity=0.138 Sum_probs=33.5
Q ss_pred hhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHh
Q 011901 130 LEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 130 i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 195 (475)
+.-+..|.-+++.|++|+|||...+..+...+ . ..+..++++.- ..-..++...+..
T Consensus 24 ~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~-~-------~~g~~vl~iS~-E~~~~~~~~r~~~ 80 (271)
T cd01122 24 TKGLRKGELIILTAGTGVGKTTFLREYALDLI-T-------QHGVRVGTISL-EEPVVRTARRLLG 80 (271)
T ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHH-H-------hcCceEEEEEc-ccCHHHHHHHHHH
Confidence 33445567799999999999965543333332 2 12556777753 3344555555543
No 323
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.45 E-value=0.045 Score=51.12 Aligned_cols=61 Identities=20% Similarity=0.234 Sum_probs=42.4
Q ss_pred CCCCcHHHHHhhhhHhcCC-cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHH
Q 011901 119 ISKLFPIQKAVLEPAMQGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~-~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (475)
+..+++.|...+..+...+ |++++|.||||||.. +-++... - ...-+++.+=.|.+|--++
T Consensus 155 ~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~---i-----~~~eRvItiEDtaELql~~ 216 (355)
T COG4962 155 FGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGF---I-----DSDERVITIEDTAELQLAH 216 (355)
T ss_pred cCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhc---C-----CCcccEEEEeehhhhccCC
Confidence 3468899999998887765 999999999999972 2222221 1 1233688888888875443
No 324
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.40 E-value=0.15 Score=48.05 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l 161 (475)
++++++.|++|+|||..+. ++...+
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l 180 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANEL 180 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHH
Confidence 4579999999999997553 333343
No 325
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.39 E-value=0.059 Score=56.49 Aligned_cols=97 Identities=13% Similarity=0.221 Sum_probs=75.5
Q ss_pred cCccchHH-HHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-----cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEe
Q 011901 326 SMYEKPSI-IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399 (475)
Q Consensus 326 ~~~~~~~~-l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlva 399 (475)
....|... +..++.....|.++++.+|+..-++..++.+.+ ++++..++|+++..+|...++...+|+.+|+|+
T Consensus 265 TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVg 344 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVG 344 (630)
T ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEe
Confidence 34445433 334455556788999999999999888777654 367889999999999999999999999999999
Q ss_pred cCc-cccCCCCCCCCEEEEcCCCC
Q 011901 400 TDV-AARGLDVPNVDLIIHYELPN 422 (475)
Q Consensus 400 T~~-~~~Gidi~~~~~vi~~~~p~ 422 (475)
|.. +...+++.++.+||+-....
T Consensus 345 T~~ll~~~~~~~~l~lvVIDEaH~ 368 (630)
T TIGR00643 345 THALIQEKVEFKRLALVIIDEQHR 368 (630)
T ss_pred cHHHHhccccccccceEEEechhh
Confidence 974 55678888899888655443
No 326
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.39 E-value=0.062 Score=48.65 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.++++.||+|.|||..+
T Consensus 53 DHvLl~GPPGlGKTTLA 69 (332)
T COG2255 53 DHVLLFGPPGLGKTTLA 69 (332)
T ss_pred CeEEeeCCCCCcHHHHH
Confidence 36999999999999855
No 327
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.37 E-value=0.15 Score=48.54 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=26.8
Q ss_pred CcHHHHHhhhhHhcC-----CcEEEEcCCCCchhHHHHHH
Q 011901 122 LFPIQKAVLEPAMQG-----RDMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~-----~~~li~~~tGsGKT~~~~~~ 156 (475)
++|||...+..+... +..++.||.|+|||..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 368888888887742 24889999999999766443
No 328
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.36 E-value=0.28 Score=41.66 Aligned_cols=141 Identities=14% Similarity=0.128 Sum_probs=76.9
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh
Q 011901 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (475)
+.+....|-|||.+++--++.++ +.|.+++++.=.+--...-...+.+.++++.... .|....... ...
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAa---------G~G~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~~-~g~~~~~~~-~~~ 92 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIA---------GQGTPVLIVQFLKGGIQQGPDRPIQLGQNLDWVR-CDLPRCLDT-PHL 92 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHh---------cCCCEEEEEEEecCCCcchHHHHHHhCCCcEEEE-CCCCCeeeC-CCc
Confidence 66778889999999988888776 5588888886444321122222333333333222 111100000 000
Q ss_pred hcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCc--hHHHHHHHHhCCCCCcEEEEccCCChhHHHHH
Q 011901 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294 (475)
Q Consensus 219 ~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 294 (475)
.. .+. ......++.... .+.-..+++||+||+-...+.++ ...+..+++..|+...+|+..-.+|+.+...+
T Consensus 93 ~~-~~~--~~~~~~~~~a~~-~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 93 DE-SEK--KALQELWQYTQA-VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CH-HHH--HHHHHHHHHHHH-HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 00 000 001111111111 12235688999999998777664 35677778888888888887777777665544
No 329
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.33 E-value=0.099 Score=55.13 Aligned_cols=91 Identities=21% Similarity=0.212 Sum_probs=69.5
Q ss_pred cchHHHHHHH-HHhccCCcEEEEecChhhHHHHHHHHHcc--CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCcccc
Q 011901 329 EKPSIIGQLI-TEHAKGGKCIVFTQTKRDADRLAHAMAKS--YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405 (475)
Q Consensus 329 ~~~~~l~~l~-~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 405 (475)
.|......++ .....|.+++|.+|+++-+.++.+.|.+. ..+..+||+++..+|.+.+....+|+.+|+|+|...-
T Consensus 174 GKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal- 252 (679)
T PRK05580 174 GKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL- 252 (679)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-
Confidence 4444443333 33345789999999999999999988764 4578899999999999999999999999999997432
Q ss_pred CCCCCCCCEEEEcCC
Q 011901 406 GLDVPNVDLIIHYEL 420 (475)
Q Consensus 406 Gidi~~~~~vi~~~~ 420 (475)
-..+.++..||.-+.
T Consensus 253 ~~p~~~l~liVvDEe 267 (679)
T PRK05580 253 FLPFKNLGLIIVDEE 267 (679)
T ss_pred cccccCCCEEEEECC
Confidence 255678888876543
No 330
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.32 E-value=0.17 Score=49.51 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=24.7
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccC
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 285 (475)
..+.+++||||+|+|... ....+.+.++.-+++..+|+.|.+
T Consensus 115 ~~~~kViiIDead~m~~~-aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER-AANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred cCCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCCeEEEEECC
Confidence 346789999999998543 223344444444445444444444
No 331
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.31 E-value=0.088 Score=55.86 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=22.0
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEE
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~ 282 (475)
...+++||||+|+|... ....+.+.++.-+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE
Confidence 46789999999998432 223333444443444444443
No 332
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.30 E-value=0.0069 Score=51.51 Aligned_cols=124 Identities=19% Similarity=0.180 Sum_probs=52.9
Q ss_pred EEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHhh
Q 011901 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219 (475)
Q Consensus 140 li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (475)
++.|+-|-|||.+.-+.+...+.. ....+++.+|+.+-++..++.+......+....-. ............
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~--------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK--------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEK-KKRIGQIIKLRF 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------------EEEE-SS--S-HHHHHCC--------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh--------cCceEEEecCCHHHHHHHHHHHHhhcccccccccc-cccccccccccc
Confidence 478999999997655544332211 12469999999998888877665543322211100 000000000111
Q ss_pred cCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCCC
Q 011901 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (475)
Q Consensus 220 ~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 287 (475)
.+..|-+..|+.+... ....+++|||||=.+ -...+..++. ....++||.|..
T Consensus 72 ~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll~----~~~~vv~stTi~ 124 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLLR----RFPRVVFSTTIH 124 (177)
T ss_dssp -CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHC----CSSEEEEEEEBS
T ss_pred ccceEEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHHh----hCCEEEEEeecc
Confidence 2456777777765532 223578999999975 2334444432 334677788874
No 333
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.28 E-value=0.065 Score=50.69 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=42.6
Q ss_pred HHHHHHcCCCCCcHHHHHhhhhH-hcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHH
Q 011901 111 VAALARRGISKLFPIQKAVLEPA-MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 111 ~~~l~~~~~~~l~~~Q~~~i~~i-~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
++.|.+.|. +++.|.+.+..+ ..++++++.|+||||||. ++-.++..+... ....+++.+-.+.++
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~------~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQ------DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhc------CCCceEEEEcCCCcc
Confidence 445555664 567788877754 456789999999999994 445555443210 123456776666665
No 334
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=95.26 E-value=0.19 Score=42.67 Aligned_cols=142 Identities=22% Similarity=0.188 Sum_probs=75.7
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEE-EcCcchhHHHHH
Q 011901 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQMRA 217 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 217 (475)
+++....|-|||.+++--++..+ +.|.++.|+.=-+-=...-.+.....+ +..+... .+....... ..
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~---------GhG~rv~vvQFiKg~~~~GE~~~~~~~-~~~v~~~~~~~g~tw~~-~~ 99 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRAL---------GHGLRVGVVQFIKGGWKYGEEAALEKF-GLGVEFHGMGEGFTWET-QD 99 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHh---------cCCCEEEEEEEeecCcchhHHHHHHhh-ccceeEEecCCceeCCC-cC
Confidence 67788889999999988888877 558888887533222111122222222 1111110 111000000 00
Q ss_pred hhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCc--hHHHHHHHHhCCCCCcEEEEccCCChhHHHHHH
Q 011901 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (475)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 295 (475)
.+ .++ ......+..... .+.-..+++||+||.-..+..++ .+.+..+++..|....+|+..-..++.+...+.
T Consensus 100 ~~--~d~--~aa~~~w~~a~~-~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 100 RE--ADI--AAAKAGWEHAKE-ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELAD 174 (198)
T ss_pred cH--HHH--HHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHH
Confidence 00 011 111111111111 11233688999999998776654 467778888888888888877777777666554
Q ss_pred h
Q 011901 296 K 296 (475)
Q Consensus 296 ~ 296 (475)
.
T Consensus 175 l 175 (198)
T COG2109 175 L 175 (198)
T ss_pred H
Confidence 4
No 335
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.26 E-value=0.098 Score=53.35 Aligned_cols=129 Identities=19% Similarity=0.162 Sum_probs=76.9
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC----CCceEEEEcCcchh
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP----SLDTICVYGGTPIS 212 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~----~~~~~~~~~~~~~~ 212 (475)
+-.++..|=-.|||.... +++..+... ..|-++++.+|.+..++.+++++...+. +-.+..+.| ...
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I- 325 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI- 325 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE-
Confidence 457888999999997554 555444321 2477899999999999999998876532 211222222 111
Q ss_pred HHHHHhhcC--CcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhC-CCCCcEEEEccCC
Q 011901 213 HQMRALDYG--VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATM 286 (475)
Q Consensus 213 ~~~~~~~~~--~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~ 286 (475)
.-...++ ..|.++|- -..+...=..++++|+|||+.+.+. .+..++-.+ ..++++|++|.|-
T Consensus 326 --~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~N 390 (738)
T PHA03368 326 --SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTN 390 (738)
T ss_pred --EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCC
Confidence 0011222 25666531 1112233447899999999987554 233333222 2378889998774
No 336
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.24 E-value=0.072 Score=50.25 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=26.8
Q ss_pred CCcHHHHHhhhhHhc----C---CcEEEEcCCCCchhHHHHHH
Q 011901 121 KLFPIQKAVLEPAMQ----G---RDMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~----~---~~~li~~~tGsGKT~~~~~~ 156 (475)
.++|||...+..+.+ + +..++.||.|.||+..+...
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~ 45 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELF 45 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHH
Confidence 467888888877653 3 24899999999999765433
No 337
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.23 E-value=0.05 Score=56.70 Aligned_cols=19 Identities=32% Similarity=0.221 Sum_probs=15.2
Q ss_pred cEEEEcCCCCchhHHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~ 156 (475)
..|+.||.|+|||.++.+-
T Consensus 42 AYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 3689999999999866433
No 338
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.22 E-value=0.081 Score=49.68 Aligned_cols=66 Identities=27% Similarity=0.418 Sum_probs=40.8
Q ss_pred HHHHHHcCCCCCcHHHHHhhhhHh-cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHH
Q 011901 111 VAALARRGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 111 ~~~l~~~~~~~l~~~Q~~~i~~i~-~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
++.|.+.|. +++.|.+.+..+. .+++++++|+||||||. ++-+++..+... ....+++.+=.+.++
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~al~~~i~~~------~~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTT-LANALLAEIAKN------DPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHhhcc------CCCceEEEECCchhh
Confidence 444555554 4556666665544 55789999999999995 444555544220 113457777776666
No 339
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.21 E-value=0.11 Score=48.61 Aligned_cols=18 Identities=33% Similarity=0.242 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+.++++.||+|||||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 357999999999999866
No 340
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.17 E-value=0.14 Score=52.59 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=24.8
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
....+++||||+|.+... -...+.+.++..+....+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~-A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA-GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 357889999999998544 2333444455544455555544
No 341
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.15 E-value=0.1 Score=52.91 Aligned_cols=92 Identities=22% Similarity=0.233 Sum_probs=70.4
Q ss_pred CccchHHHHHHHHH-hccCCcEEEEecChhhHHHHHHHHHcc--CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCcc
Q 011901 327 MYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAKS--YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (475)
Q Consensus 327 ~~~~~~~l~~l~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 403 (475)
...|......++.. ...|++++|.+|++.-+.++.+.|.+. ..+..+||+++..+|.+.+....+|+.+|+|+|...
T Consensus 7 GsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsa 86 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSA 86 (505)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHH
Confidence 34556555444433 346789999999999999999888764 457889999999999999999999999999999643
Q ss_pred ccCCCCCCCCEEEEcC
Q 011901 404 ARGLDVPNVDLIIHYE 419 (475)
Q Consensus 404 ~~Gidi~~~~~vi~~~ 419 (475)
- -..++++..||.-+
T Consensus 87 l-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 87 L-FLPFKNLGLIIVDE 101 (505)
T ss_pred H-cCcccCCCEEEEEC
Confidence 2 24566788877544
No 342
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.15 E-value=0.08 Score=53.34 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCchhHHHHHH
Q 011901 137 RDMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~ 156 (475)
+.++++||.|+|||.++.+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36999999999999866443
No 343
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.14 E-value=0.11 Score=52.86 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=24.0
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
..+.+++||||+|.+... ....+.+.++..+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~-a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHH-HHHHHHHHHhCCCCCEEEEEEe
Confidence 356789999999987543 2223344444444455555554
No 344
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.11 E-value=0.15 Score=52.80 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=22.5
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEE
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~ 282 (475)
...+++||||+|+|... -...+.+.++.-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~-a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHH-HHHHHHHHHHcCCCCeEEEEe
Confidence 46789999999998543 223333444444444444444
No 345
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.10 E-value=0.55 Score=45.87 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=30.3
Q ss_pred CCccEEEEeccccccc-CCchHHHHHHHHhCC---CCCcEEEEccCCCh-hHHHHHHhh
Q 011901 244 SEVQFVVLDEADQMLS-VGFAEDVEVILERLP---QNRQSMMFSATMPP-WIRSLTNKY 297 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~-~~~~~~~~~i~~~~~---~~~~~i~~SAT~~~-~~~~~~~~~ 297 (475)
.+.++|+||=+-+... ......+..++.... +.-.++++|||... ........|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 4678899997665422 113334444444432 22356888999877 444444444
No 346
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.09 E-value=0.037 Score=56.71 Aligned_cols=124 Identities=16% Similarity=0.126 Sum_probs=72.1
Q ss_pred CCCcHHHHHhhhhHhcC--CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHH-HHHhh
Q 011901 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK-EFHES 196 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~-~~~~~ 196 (475)
.+.+|+|.+.++.+... +.+.+..++-+|||.+.+..+...+.. ....++++.||..+|.++.+ .+..+
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~--------~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ--------DPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe--------CCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 36889999999988765 569999999999998554444333321 23459999999999999874 34443
Q ss_pred CC---CCceEEEE---cCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011901 197 AP---SLDTICVY---GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 197 ~~---~~~~~~~~---~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~ 258 (475)
+. .+...+.. .........+... +..+.++.-..- ..+.-..++++++||++.+.
T Consensus 87 i~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 87 IRASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCC------cccccCCcCEEEEechhhcc
Confidence 32 11111111 0011111111122 333444332111 11224568899999999984
No 347
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.08 E-value=0.04 Score=47.42 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=26.9
Q ss_pred HhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHH
Q 011901 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (475)
+..++++++.|++|+|||..+... ...+.. .|..++++ +...|....
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai-~~~~~~--------~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAI-ANEAIR--------KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHH-HHHHHH--------TT--EEEE-EHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHH-HHHhcc--------CCcceeEe-ecCceeccc
Confidence 345678999999999999866433 334433 24555554 445555543
No 348
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.06 E-value=0.14 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=17.9
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHH
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l 161 (475)
.++++.||+|+|||.+. -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999654 4444444
No 349
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.01 E-value=0.85 Score=43.93 Aligned_cols=120 Identities=15% Similarity=0.181 Sum_probs=58.0
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEc-CC-HHH-HHHHHHHHHhhCCCCceEEEEcCcchh
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA-PT-REL-AKQVEKEFHESAPSLDTICVYGGTPIS 212 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~-Pt-~~L-a~q~~~~~~~~~~~~~~~~~~~~~~~~ 212 (475)
++.+++.||+|+|||.+..-.+.. +.. .+.++.++. .+ +.= +.||....... ++.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~--------~g~~V~lItaDtyR~gAveQLk~yae~l--gvpv---------- 264 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLK--------QNRTVGFITTDTFRSGAVEQFQGYADKL--DVEL---------- 264 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH--------cCCeEEEEeCCccCccHHHHHHHHhhcC--CCCE----------
Confidence 345889999999999766444432 222 134444443 22 322 23433322221 1111
Q ss_pred HHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccC-CchHHHHHHHHhCCCCCcEEEEccCCCh
Q 011901 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 213 ~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 288 (475)
....+|+.+...+..-. ...+.++|+||=+=+.... .....+..+.....+..-++.+|||...
T Consensus 265 -----------~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~ 329 (407)
T PRK12726 265 -----------IVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS 329 (407)
T ss_pred -----------EecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH
Confidence 11235555555443311 1245788999988664321 1223344444444433335667776554
No 350
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.01 E-value=0.19 Score=45.75 Aligned_cols=40 Identities=23% Similarity=0.060 Sum_probs=25.8
Q ss_pred hcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcC
Q 011901 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~P 181 (475)
..|.-+++.|++|+|||..++-.++..+.+ .+..+++++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~--------~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK--------QGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCceEEEeC
Confidence 345568999999999996554344433322 1555777773
No 351
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.28 Score=48.44 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHh----c----C----CcEEEEcCCCCchhHHH
Q 011901 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAM----Q----G----RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~----~----~----~~~li~~~tGsGKT~~~ 153 (475)
.++.+++.++.+...|+....+.-.+.+..-. . . ..+++.||.|||||..+
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLA 555 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALA 555 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHH
Confidence 57888888888888887766665555554321 1 1 24899999999999744
No 352
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.00 E-value=0.23 Score=49.44 Aligned_cols=142 Identities=16% Similarity=0.140 Sum_probs=67.7
Q ss_pred hcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEE-EcCcchh
Q 011901 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPIS 212 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~-~~~~~~~ 212 (475)
..|.-+++.|.+|+|||..++-.+.....+ .+..+++++ ...-..|+..++-....++....+ .|.....
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia~~~a~~--------~g~~v~~fS-lEm~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~ 262 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIAENVALR--------EGKPVLFFS-LEMSAEQLGERLLASKSGINTGNIRTGRFNDS 262 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEE-CCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHH
Confidence 334558999999999996544333333212 244566665 445556666555443323322111 1222211
Q ss_pred HHH------HHhhcCCcEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccccC---CchHHHHHHHHhCC----
Q 011901 213 HQM------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV---GFAEDVEVILERLP---- 274 (475)
Q Consensus 213 ~~~------~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~---~~~~~~~~i~~~~~---- 274 (475)
+.. ..+ .+..+.|. |.+.+...+.+-......+++||||=.|.+... .....+..+.+.++
T Consensus 263 ~~~~~~~~~~~l-~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAk 341 (421)
T TIGR03600 263 DFNRLLNAVDRL-SEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAK 341 (421)
T ss_pred HHHHHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 111 111 22345553 333444433321111225889999999877541 12223333333321
Q ss_pred -CCCcEEEEccC
Q 011901 275 -QNRQSMMFSAT 285 (475)
Q Consensus 275 -~~~~~i~~SAT 285 (475)
-++.++++|-.
T Consensus 342 e~~i~Vi~lsQl 353 (421)
T TIGR03600 342 ELDVPVVLLAQL 353 (421)
T ss_pred HhCCcEEEeccc
Confidence 24666766654
No 353
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.97 E-value=0.12 Score=49.35 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=24.1
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
...++||+||++.|... ....+.+.++.-+.+..+++.|
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 57889999999998543 3344444444444455455444
No 354
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.18 Score=51.08 Aligned_cols=57 Identities=11% Similarity=0.100 Sum_probs=37.5
Q ss_pred CCccCCcccCCCCCHHHHHHHHHc---CCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHH
Q 011901 94 SKDEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~l~~~---~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
...+..+|++.+=-+++++.|+.. ....+-.+.+-.+ ..-+.+|+.||+|||||+.+
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHHH
Confidence 455677788888777787777643 3333333333332 22357999999999999866
No 355
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.91 E-value=0.028 Score=50.67 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=34.4
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
.|..+++.|++|||||..++-.+...+.+. +..+++++ +.+-..++.+.++.+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--------ge~vlyvs-~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF--------GEKVLYVS-FEEPPEELIENMKSFG 71 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--------T--EEEEE-SSS-HHHHHHHHHTTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--------CCcEEEEE-ecCCHHHHHHHHHHcC
Confidence 346799999999999976655555554321 33466666 4555577777777654
No 356
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.90 E-value=0.35 Score=50.89 Aligned_cols=67 Identities=10% Similarity=0.148 Sum_probs=36.7
Q ss_pred EccHHHHHHHHhCCCCCCCccEEEEecccccccCC-chHHHHHHHHhCCCCCcEEEEccCCChh-HHHHHHhh
Q 011901 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPPW-IRSLTNKY 297 (475)
Q Consensus 227 ~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~~~ 297 (475)
.+|+.+.+.+.. +.+.++|+||=+=+..... ....+..+.....+...++++|||.... +......|
T Consensus 249 ~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 249 KDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred CCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 356666666653 4566889999887654321 1222333333333445678888987543 33344444
No 357
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.88 E-value=0.28 Score=47.49 Aligned_cols=90 Identities=14% Similarity=0.209 Sum_probs=49.5
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (475)
|.-+++.|++|+|||...+.. +..+.. .+.+++++.-. +-..|+......+.-......+...
T Consensus 82 GslvLI~G~pG~GKStLllq~-a~~~a~--------~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~~l~l~~e------- 144 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQV-AARLAK--------RGGKVLYVSGE-ESPEQIKLRADRLGISTENLYLLAE------- 144 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHH-HHHHHh--------cCCeEEEEECC-cCHHHHHHHHHHcCCCcccEEEEcc-------
Confidence 355899999999999754333 333322 24568887654 4456666555544211111111100
Q ss_pred HHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011901 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~ 258 (475)
...+.+...+.. .+.++||||+++.+.
T Consensus 145 -----------~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 -----------TNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred -----------CcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 122334444432 357889999999774
No 358
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.84 E-value=0.17 Score=52.23 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=15.0
Q ss_pred EEEEcCCCCchhHHHHHH
Q 011901 139 MIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~ 156 (475)
+|++|+.|+|||.++.+.
T Consensus 41 ~Lf~Gp~GvGKTtlAr~l 58 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRIL 58 (618)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 699999999999866543
No 359
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.83 E-value=0.047 Score=49.87 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=19.0
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHh
Q 011901 139 MIGRARTGTGKTLAFGIPILDKIIK 163 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~l~~ 163 (475)
+|+.||||||||.+ +.+++.++-+
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 89999999999964 4677777644
No 360
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.83 E-value=0.11 Score=54.01 Aligned_cols=46 Identities=20% Similarity=0.340 Sum_probs=39.2
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCCCh
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 288 (475)
..+.-++|+|+.|++.+......+..+++..|++.+.++.|-+-|+
T Consensus 127 ~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 127 YEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred hcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 3445689999999999998888999999999999999998877543
No 361
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.83 E-value=0.11 Score=56.29 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=75.1
Q ss_pred ccCccchHHH-HHHHHHhccCCcEEEEecChhhHHHHHHHHHcc-----CCcccccCCCCHHHHHHHHHHHhcCCCcEEE
Q 011901 325 TSMYEKPSII-GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-----YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (475)
Q Consensus 325 ~~~~~~~~~l-~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 398 (475)
.....|.... ..++.....+.+++|.+||..-+.+.++.+.+. .++..++|..+..++..+++.+.+|+.+|+|
T Consensus 480 dTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVI 559 (926)
T TIGR00580 480 DVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILI 559 (926)
T ss_pred CCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEE
Confidence 4445555433 334445556789999999999999988887652 4567789999999999999999999999999
Q ss_pred ecC-ccccCCCCCCCCEEEEcCCCC
Q 011901 399 ATD-VAARGLDVPNVDLIIHYELPN 422 (475)
Q Consensus 399 aT~-~~~~Gidi~~~~~vi~~~~p~ 422 (475)
+|. .+...+.+.++.++|+-....
T Consensus 560 GTp~ll~~~v~f~~L~llVIDEahr 584 (926)
T TIGR00580 560 GTHKLLQKDVKFKDLGLLIIDEEQR 584 (926)
T ss_pred chHHHhhCCCCcccCCEEEeecccc
Confidence 997 455678888999988655443
No 362
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.80 E-value=0.25 Score=51.70 Aligned_cols=92 Identities=23% Similarity=0.249 Sum_probs=74.4
Q ss_pred ccCccchHHHHHHHHH-hccCCcEEEEecChhhHHHHHHHHHcc--CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecC
Q 011901 325 TSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAKS--YNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401 (475)
Q Consensus 325 ~~~~~~~~~l~~l~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 401 (475)
...+.|.+.+..++.+ +..|.++||.+|.+.-...+...+... .++..+|+++++.+|.+......+|+.+|+|.|-
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 4556777777777665 456789999999999998888888654 5788999999999999999999999999999995
Q ss_pred ccccCCCCCCCCEEEE
Q 011901 402 VAARGLDVPNVDLIIH 417 (475)
Q Consensus 402 ~~~~Gidi~~~~~vi~ 417 (475)
.+- -.-+++...+|.
T Consensus 305 SAl-F~Pf~~LGLIIv 319 (730)
T COG1198 305 SAL-FLPFKNLGLIIV 319 (730)
T ss_pred hhh-cCchhhccEEEE
Confidence 422 245667887774
No 363
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.79 E-value=1.2 Score=41.22 Aligned_cols=54 Identities=11% Similarity=0.235 Sum_probs=31.5
Q ss_pred CCccEEEEecccccccC-CchHHHHHHHHhCC------CCCcEEEEccCCChhHHHHHHhh
Q 011901 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERLP------QNRQSMMFSATMPPWIRSLTNKY 297 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~-~~~~~~~~i~~~~~------~~~~~i~~SAT~~~~~~~~~~~~ 297 (475)
.++++|++|=+-+.... ....++..+.+..+ +.--++.++||...........+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f 213 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVF 213 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHH
Confidence 45788999988765422 12334455554443 45557888998765444444443
No 364
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.79 E-value=0.26 Score=52.34 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=25.9
Q ss_pred ccEEEEecccccccCCc----hHHHHHHHHhCCCCCcEEEEccCCChh
Q 011901 246 VQFVVLDEADQMLSVGF----AEDVEVILERLPQNRQSMMFSATMPPW 289 (475)
Q Consensus 246 ~~~vViDE~H~~~~~~~----~~~~~~i~~~~~~~~~~i~~SAT~~~~ 289 (475)
-.+++|||+|.+.+.+. ......+++.+-....+.++.||-.++
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E 326 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQE 326 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHH
Confidence 45899999999865432 233444444443444566666665444
No 365
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.78 E-value=0.23 Score=50.25 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=14.0
Q ss_pred EEEEcCCCCchhHHHH
Q 011901 139 MIGRARTGTGKTLAFG 154 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~ 154 (475)
+++.||+|+|||.++.
T Consensus 39 ~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5999999999998664
No 366
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.76 E-value=0.39 Score=51.34 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.+.++.||+|+|||..+
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 57999999999999754
No 367
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.75 E-value=0.4 Score=52.04 Aligned_cols=142 Identities=13% Similarity=0.127 Sum_probs=104.8
Q ss_pred HHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHh------------------------hhhhcCCCCCCeEEEEc
Q 011901 125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK------------------------FNEKHGRGRNPLCLVLA 180 (475)
Q Consensus 125 ~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~------------------------~~~~~~~~~~~~~lil~ 180 (475)
-|++-+..+..+-|+|--..|=-=.|+-..+.-+.-+.- ........+|+|+.++.
T Consensus 731 k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~ 810 (1139)
T COG1197 731 KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVH 810 (1139)
T ss_pred cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEe
Confidence 388888888888888888887777777554443222210 00011335689999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHH----HhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccc
Q 011901 181 PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR----ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (475)
Q Consensus 181 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~ 256 (475)
|..+-..+..+.++++.|..++.+.+|.+...+-.+ -.++.+||+||| .+++.+ ++..+...+||+-||+
T Consensus 811 NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T-----TIIEtG-IDIPnANTiIIe~AD~ 884 (1139)
T COG1197 811 NRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT-----TIIETG-IDIPNANTIIIERADK 884 (1139)
T ss_pred cchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe-----eeeecC-cCCCCCceEEEecccc
Confidence 999999999999999999999999999988665322 234679999999 766654 5688999999999999
Q ss_pred cccCCchHHHHHHHHhCCCC
Q 011901 257 MLSVGFAEDVEVILERLPQN 276 (475)
Q Consensus 257 ~~~~~~~~~~~~i~~~~~~~ 276 (475)
+ ...++..+..+....
T Consensus 885 f----GLsQLyQLRGRVGRS 900 (1139)
T COG1197 885 F----GLAQLYQLRGRVGRS 900 (1139)
T ss_pred c----cHHHHHHhccccCCc
Confidence 6 456667776666543
No 368
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.75 E-value=0.81 Score=45.00 Aligned_cols=48 Identities=15% Similarity=-0.029 Sum_probs=27.2
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEc--CCHHHHHHHHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA--PTRELAKQVEKEFH 194 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~ 194 (475)
-++++|++|+|||.++.--+. .+.+ .|.++++++ |.+.-|.++.+.+.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~--------~G~kV~lV~~D~~R~aA~eQLk~~a 151 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQR--------KGFKPCLVCADTFRAGAFDQLKQNA 151 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH--------CCCCEEEEcCcccchhHHHHHHHHh
Confidence 478999999999976543332 2221 244555554 33555554444433
No 369
>PRK06904 replicative DNA helicase; Validated
Probab=94.75 E-value=0.44 Score=47.88 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=60.5
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcC--cchhH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG--TPISH 213 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~--~~~~~ 213 (475)
|.=+++.|.||.|||..+ +-+...+.. ..+..++++ ..+.-..|+..++-....++....+..+ .+..+
T Consensus 221 G~LiiIaarPg~GKTafa-lnia~~~a~-------~~g~~Vl~f-SlEMs~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e 291 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFA-MNLCENAAM-------ASEKPVLVF-SLEMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQD 291 (472)
T ss_pred CcEEEEEeCCCCChHHHH-HHHHHHHHH-------hcCCeEEEE-eccCCHHHHHHHHHHhhCCCCHHHhccCCCCCHHH
Confidence 344788999999999644 444333322 124446655 4567777777776655444433222222 22222
Q ss_pred HH------HHhhcCCcEEEE-----ccHHHHHHHHhCCCCCCCccEEEEeccccccc
Q 011901 214 QM------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 214 ~~------~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~ 259 (475)
+. ..+....++.|- |+..+...+.+-......+++||||=.+.+..
T Consensus 292 ~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 292 WAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 21 112223446662 44455443332111123578999999887753
No 370
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.74 E-value=0.12 Score=52.99 Aligned_cols=19 Identities=26% Similarity=0.190 Sum_probs=15.7
Q ss_pred cEEEEcCCCCchhHHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~ 156 (475)
.+|+.||.|+|||.++.+.
T Consensus 40 a~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5889999999999876543
No 371
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.74 E-value=0.14 Score=54.88 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=29.3
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhh--HhcCCcEEEEcCCCCchhHHH
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP--AMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~--i~~~~~~li~~~tGsGKT~~~ 153 (475)
+...|++++-.+.+++.|...-.. +..++. .+.. +...+.+++.||+|||||..+
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~-~~~~~~-~~~~~g~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEW-PLKHPE-IFEKMGIRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHh-hhhCHH-HHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 344566666666666666543111 001111 1111 112356999999999999754
No 372
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.73 E-value=0.34 Score=42.13 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=23.0
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEE
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~ 282 (475)
....+++|+||+|++... ....+...++..++...+++.
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEE
Confidence 456789999999997543 233344444443434444443
No 373
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=94.72 E-value=0.021 Score=53.03 Aligned_cols=45 Identities=24% Similarity=0.154 Sum_probs=37.3
Q ss_pred CCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHh
Q 011901 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~ 163 (475)
+.-.++.|..-+.++.+..-++..||-|+|||..+...+..++.+
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~ 170 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGA 170 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhh
Confidence 555789999999999887778999999999998777777766644
No 374
>PHA00350 putative assembly protein
Probab=94.69 E-value=0.4 Score=46.55 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=16.9
Q ss_pred EEEEcCCCCchhHHHHHH-HHHHH
Q 011901 139 MIGRARTGTGKTLAFGIP-ILDKI 161 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~-~l~~l 161 (475)
.++.|.+|||||+.++.- ++.++
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 578999999999877653 44443
No 375
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.68 E-value=0.22 Score=55.46 Aligned_cols=79 Identities=14% Similarity=0.208 Sum_probs=65.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCccE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (475)
+.++++++|+..-++.+++.+.+.+++.++.+++|+.+..+....+ .+..+|+||| +.+.++ +++.++++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-----dIierG-IDIP~v~~ 882 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----TIIETG-IDIPTANT 882 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-----chhhcc-cccccCCE
Confidence 6789999999999999999999998889999999998776544332 3569999999 666554 56889999
Q ss_pred EEEeccccc
Q 011901 249 VVLDEADQM 257 (475)
Q Consensus 249 vViDE~H~~ 257 (475)
||++.++++
T Consensus 883 VIi~~ad~f 891 (1147)
T PRK10689 883 IIIERADHF 891 (1147)
T ss_pred EEEecCCCC
Confidence 999999874
No 376
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.026 Score=53.22 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+|+.||+|+|||+.+
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 57999999999999744
No 377
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.66 E-value=0.053 Score=51.79 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=29.6
Q ss_pred hHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHH
Q 011901 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (475)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La 186 (475)
.+..++++++.|+||||||. ++-+++..+ ....+++.+=.+.+|.
T Consensus 158 ~v~~~~nilI~G~tGSGKTT-ll~aLl~~i---------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTT-MSKTLISAI---------PPQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHH-HHHHHHccc---------CCCCCEEEECCCcccc
Confidence 34567899999999999995 434444443 1234466666766653
No 378
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.66 E-value=0.11 Score=49.48 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=27.8
Q ss_pred HhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHH
Q 011901 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
+..+++++++|+||||||. ++-+++..+ ....+++.+=.+.++
T Consensus 157 v~~~~nili~G~tgSGKTT-ll~aL~~~i---------p~~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTT-FTNAALREI---------PAIERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHH-HHHHHHhhC---------CCCCeEEEecCCCcc
Confidence 4457899999999999995 445555544 123456655444444
No 379
>PRK05973 replicative DNA helicase; Provisional
Probab=94.63 E-value=0.12 Score=46.56 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHcCCCCCcHHHH---------HhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCC
Q 011901 103 KLDISQDIVAALARRGISKLFPIQK---------AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (475)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~~l~~~Q~---------~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 173 (475)
..++++.+-+.-.+.||...+-... +...-+..|.-++|.|++|+|||..++-.+...+. .|
T Consensus 22 ~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~---------~G 92 (237)
T PRK05973 22 NIPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK---------SG 92 (237)
T ss_pred CCcHHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh---------cC
Confidence 3455566555555566654332222 23334445566899999999999766544444432 25
Q ss_pred CeEEEEcCCHHHHHHHHHHHHhh
Q 011901 174 PLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 174 ~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.+++|+.- ++-..|+.+++...
T Consensus 93 e~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 93 RTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred CeEEEEEE-eCCHHHHHHHHHHc
Confidence 56777754 44467777777665
No 380
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.62 E-value=0.28 Score=47.24 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=27.7
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccC
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 285 (475)
....+++||||+|.|... ....+.+.++.-+.+..++++|..
T Consensus 139 ~g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEECC
Confidence 346789999999998544 344455666665555666666544
No 381
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.61 E-value=0.23 Score=47.48 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCchhHHHH
Q 011901 137 RDMIGRARTGTGKTLAFG 154 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~ 154 (475)
.++++.||+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 469999999999997553
No 382
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.48 Score=43.36 Aligned_cols=114 Identities=16% Similarity=0.275 Sum_probs=65.5
Q ss_pred hhHhcCC-----cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEE
Q 011901 131 EPAMQGR-----DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205 (475)
Q Consensus 131 ~~i~~~~-----~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~ 205 (475)
|.+..|+ .+|+.||+|+||+..+ -+... + .....+-+.+..|+..|.-+-.++..
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLA--KAVAT--E---------AnSTFFSvSSSDLvSKWmGESEkLVk------- 215 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLA--KAVAT--E---------ANSTFFSVSSSDLVSKWMGESEKLVK------- 215 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHH--HHHHh--h---------cCCceEEeehHHHHHHHhccHHHHHH-------
Confidence 4455553 4899999999999643 22111 0 11367777888887776554433311
Q ss_pred EcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCc---hHHHHHH----HHhC----C
Q 011901 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF---AEDVEVI----LERL----P 274 (475)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~---~~~~~~i----~~~~----~ 274 (475)
.|+.+.. -+..++|.|||++.+..... ....++| +-++ .
T Consensus 216 -------------------------nLFemAR-----e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~ 265 (439)
T KOG0739|consen 216 -------------------------NLFEMAR-----ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGN 265 (439)
T ss_pred -------------------------HHHHHHH-----hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcccc
Confidence 1122222 23456799999997765421 1222222 2222 2
Q ss_pred CCCcEEEEccCCChhHHHHH
Q 011901 275 QNRQSMMFSATMPPWIRSLT 294 (475)
Q Consensus 275 ~~~~~i~~SAT~~~~~~~~~ 294 (475)
.+--++++.||-.|++.+-+
T Consensus 266 d~~gvLVLgATNiPw~LDsA 285 (439)
T KOG0739|consen 266 DNDGVLVLGATNIPWVLDSA 285 (439)
T ss_pred CCCceEEEecCCCchhHHHH
Confidence 34468899999998875543
No 383
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.60 E-value=0.27 Score=50.85 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=24.2
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
....+++||||+|.+... -...+.+.++.-+....+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 457889999999987543 2233444455444455455444
No 384
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.099 Score=51.41 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=32.5
Q ss_pred CCccCCcccCCC---CCHHHHHHHHHc---CCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHH
Q 011901 94 SKDEGLDISKLD---ISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 94 ~~~~~~~~~~~~---l~~~l~~~l~~~---~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
--.|..+|++++ |..+.-+.+... -.+.|.-+-+-.++++ +.+|+.||+|+|||+.+
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HV---KGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHV---KGILLYGPPGTGKTLIA 273 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccce---eeEEEECCCCCChhHHH
Confidence 345667777775 455554444432 1222222222223222 46999999999999855
No 385
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.17 Score=48.87 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=20.2
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCC
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~ 274 (475)
...-+||+||++.+.+... ..+..+++...
T Consensus 122 ~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~ 151 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-EVLYSLLRAPG 151 (366)
T ss_pred CCeEEEEEcchhhhccccc-hHHHHHHhhcc
Confidence 3455799999999987643 55555555543
No 386
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.58 E-value=0.18 Score=45.60 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=32.5
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
|.-+++.|++|+|||..+...+...+. .+.+++++.-. +-..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~---------~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK---------QGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh---------CCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 356899999999999765444444332 25566776653 4445666666655
No 387
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.54 E-value=0.74 Score=44.45 Aligned_cols=46 Identities=17% Similarity=0.129 Sum_probs=28.2
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhC-CCCCcEEEEccCCChh
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPW 289 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~ 289 (475)
.+...++.+||.|- .+.+-...+..+++.+ ....-+|..|-++|..
T Consensus 125 ~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 125 AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 34566899999994 3333344455555554 3455667777777654
No 388
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.54 E-value=1.3 Score=44.43 Aligned_cols=21 Identities=24% Similarity=0.069 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCchhHHHHHHH
Q 011901 137 RDMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~ 157 (475)
.-+.+.||||+|||.+....+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred cEEEEECCCCccHHHHHHHHH
Confidence 448899999999998664433
No 389
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.52 E-value=0.059 Score=53.02 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=29.5
Q ss_pred CcHHHHHhhhhHhcCCc--EEEEcCCCCchhHHHHHHHHHHH
Q 011901 122 LFPIQKAVLEPAMQGRD--MIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~--~li~~~tGsGKT~~~~~~~l~~l 161 (475)
+.+.|.+.+..++...+ +|+.||||||||.+ +..++..+
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~l 282 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSEL 282 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHh
Confidence 46788888888887654 78899999999964 35555555
No 390
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.51 E-value=0.043 Score=56.21 Aligned_cols=155 Identities=15% Similarity=0.159 Sum_probs=90.9
Q ss_pred CCCcHHHHHhhhhHhcCC----------cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHH
Q 011901 120 SKLFPIQKAVLEPAMQGR----------DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~----------~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (475)
..++..|.+++-.+...+ .+|+-...|.||-.+..-.|+.-.++ ...++|++.-+..|-...
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk--------GRKrAlW~SVSsDLKfDA 334 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK--------GRKRALWFSVSSDLKFDA 334 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc--------ccceeEEEEeccccccch
Confidence 357888988887665431 25555455555543332333443333 256799999999998888
Q ss_pred HHHHHhhC-CCCceEEEE----cCcchhHHHHHhhcCCcEEEEccHHHHHHHHhC-------------CCCCCCccEEEE
Q 011901 190 EKEFHESA-PSLDTICVY----GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-------------ALNLSEVQFVVL 251 (475)
Q Consensus 190 ~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-------------~~~~~~~~~vVi 251 (475)
.+.+.... +++.+..+. +....++. -...-.|+++|+..|.-..... +..-+-=++||+
T Consensus 335 ERDL~DigA~~I~V~alnK~KYakIss~en---~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvf 411 (1300)
T KOG1513|consen 335 ERDLRDIGATGIAVHALNKFKYAKISSKEN---TNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVF 411 (1300)
T ss_pred hhchhhcCCCCccceehhhccccccccccc---CCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEe
Confidence 88888765 233333321 11100000 0112479999998876332210 011122357999
Q ss_pred ecccccccC---------CchHHHHHHHHhCCCCCcEEEEccCC
Q 011901 252 DEADQMLSV---------GFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 252 DE~H~~~~~---------~~~~~~~~i~~~~~~~~~~i~~SAT~ 286 (475)
||||+-.+. ..+..+..+-+.+| +..++.-|||=
T Consensus 412 DECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 412 DECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred hhhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 999986542 24667777777775 56689999994
No 391
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.043 Score=50.42 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHh
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIK 163 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~ 163 (475)
..|+++.||||||||+.+ -.|+.+++
T Consensus 97 KSNILLiGPTGsGKTlLA--qTLAk~Ln 122 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA--QTLAKILN 122 (408)
T ss_pred eccEEEECCCCCcHHHHH--HHHHHHhC
Confidence 468999999999999844 33444433
No 392
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.40 E-value=0.25 Score=48.29 Aligned_cols=81 Identities=15% Similarity=0.106 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHH
Q 011901 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (475)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (475)
..+++.+++. +..+-..|.++.=..-.|.. -+.|-.|||||.+.++-+ ..+.. .....++++.+=|+.|+.
T Consensus 150 ~a~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Ka-a~lh~------knPd~~I~~Tfftk~L~s 220 (660)
T COG3972 150 NALLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKA-AELHS------KNPDSRIAFTFFTKILAS 220 (660)
T ss_pred HHHHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHH-HHHhc------CCCCceEEEEeehHHHHH
Confidence 3445555443 34566788887766666655 679999999997543322 23322 234678999999999999
Q ss_pred HHHHHHHhhC
Q 011901 188 QVEKEFHESA 197 (475)
Q Consensus 188 q~~~~~~~~~ 197 (475)
++...+.+++
T Consensus 221 ~~r~lv~~F~ 230 (660)
T COG3972 221 TMRTLVPEFF 230 (660)
T ss_pred HHHHHHHHHH
Confidence 8877665554
No 393
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.39 E-value=0.21 Score=47.23 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.++++.||+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999744
No 394
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.36 E-value=0.45 Score=51.55 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=20.5
Q ss_pred HHHhhhhHh----c--CCcEEEEcCCCCchhHHH
Q 011901 126 QKAVLEPAM----Q--GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 126 Q~~~i~~i~----~--~~~~li~~~tGsGKT~~~ 153 (475)
|..-+..+. + ..+.++.||+|+|||..+
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 655555544 2 257999999999999754
No 395
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.35 E-value=0.24 Score=49.71 Aligned_cols=18 Identities=39% Similarity=0.335 Sum_probs=14.8
Q ss_pred cEEEEcCCCCchhHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~ 155 (475)
.++++||+|+|||..+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999976543
No 396
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.35 E-value=0.058 Score=48.80 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=11.6
Q ss_pred EEEEcCCCCchhH
Q 011901 139 MIGRARTGTGKTL 151 (475)
Q Consensus 139 ~li~~~tGsGKT~ 151 (475)
+++.|+.|||||.
T Consensus 1 ~vv~G~pGsGKSt 13 (234)
T PF01443_consen 1 IVVHGVPGSGKST 13 (234)
T ss_pred CEEEcCCCCCHHH
Confidence 4789999999996
No 397
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.34 E-value=0.37 Score=52.40 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.+.++.||+|+|||..+
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 57999999999999755
No 398
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.33 E-value=0.17 Score=51.23 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=26.4
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
....+++||||+|++... ....+.+.++..++...+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 357889999999998543 3344455555555666666655
No 399
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.33 E-value=0.78 Score=45.05 Aligned_cols=20 Identities=30% Similarity=0.192 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchhHHHHH
Q 011901 136 GRDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~ 155 (475)
+.-+.+.|+||+|||.+...
T Consensus 191 g~vi~lvGpnG~GKTTtlak 210 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAK 210 (420)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34589999999999986543
No 400
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.14 Score=54.92 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=36.5
Q ss_pred ccCCcccCCCCCHHHHHHHHHcCCCC-CcHHHHHhhhhHhcCCcEEEEcCCCCchhHHH
Q 011901 96 DEGLDISKLDISQDIVAALARRGISK-LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~-l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
.....|++++....++..|+++-..- ++|-+..-+ .|..-+.+++.||+|+|||+.+
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHH
Confidence 34566888888888888888764332 222222211 1223356999999999999855
No 401
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.23 E-value=0.53 Score=42.41 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=31.2
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.|..+++.|++|+|||..++..+...+. .+..++++.- .+...++.+....+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~---------~g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR---------DGDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh---------cCCeEEEEEc-cCCHHHHHHHHHHh
Confidence 3567999999999999755443333331 1445666664 44455555544433
No 402
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.15 E-value=0.066 Score=45.55 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=16.4
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGIPILDKII 162 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~l~ 162 (475)
++++.|++|+|||.. +.-++..+.
T Consensus 1 ~i~iTG~pG~GKTTl-l~k~i~~l~ 24 (168)
T PF03266_consen 1 HIFITGPPGVGKTTL-LKKVIEELK 24 (168)
T ss_dssp EEEEES-TTSSHHHH-HHHHHHHHH
T ss_pred CEEEECcCCCCHHHH-HHHHHHHhh
Confidence 478999999999963 345555553
No 403
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.18 Score=47.49 Aligned_cols=57 Identities=21% Similarity=0.154 Sum_probs=35.2
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCc-HHHHHhhhhHhcCCcEEEEcCCCCchhHHH
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLF-PIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~-~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
-..+|.+.+=-+.+++.+++.-+..++ |-.-.--+.....+.+++.||+|+|||..+
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 345677887778888888765333221 211111112223467999999999999855
No 404
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.10 E-value=0.26 Score=49.66 Aligned_cols=17 Identities=41% Similarity=0.343 Sum_probs=14.1
Q ss_pred EEEEcCCCCchhHHHHH
Q 011901 139 MIGRARTGTGKTLAFGI 155 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~ 155 (475)
.++.||.|+|||.++.+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999976643
No 405
>PRK07004 replicative DNA helicase; Provisional
Probab=93.99 E-value=0.37 Score=48.33 Aligned_cols=140 Identities=16% Similarity=0.126 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEE-EcCcchhHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~-~~~~~~~~~ 214 (475)
|.-+++.|.||+|||..+ +-+...+.. ..+..++++ ..+.-..|+..++-....++....+ .|.....++
T Consensus 213 g~liviaarpg~GKT~~a-l~ia~~~a~-------~~~~~v~~f-SlEM~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~ 283 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFS-MNIGEYVAV-------EYGLPVAVF-SMEMPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDW 283 (460)
T ss_pred CceEEEEeCCCCCccHHH-HHHHHHHHH-------HcCCeEEEE-eCCCCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHH
Confidence 344888999999999644 433333321 114445555 4455666666665433323322211 222222222
Q ss_pred H------HHhhcCCcEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccccCC----chHHHHHHHHhCC-----
Q 011901 215 M------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERLP----- 274 (475)
Q Consensus 215 ~------~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~----~~~~~~~i~~~~~----- 274 (475)
. ..+ .+..+.|. |+..+...+.+-......+++||||=.+.+...+ ....+..+.+.++
T Consensus 284 ~~~~~a~~~l-~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAke 362 (460)
T PRK07004 284 PKLTHAVQKM-SEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKE 362 (460)
T ss_pred HHHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 1 111 23456653 3444443332211112357899999999875322 2223344433332
Q ss_pred CCCcEEEEccC
Q 011901 275 QNRQSMMFSAT 285 (475)
Q Consensus 275 ~~~~~i~~SAT 285 (475)
-++.++++|--
T Consensus 363 l~ipVi~lsQL 373 (460)
T PRK07004 363 LDVPVIALSQL 373 (460)
T ss_pred hCCeEEEEecc
Confidence 24566666643
No 406
>PRK05748 replicative DNA helicase; Provisional
Probab=93.93 E-value=0.65 Score=46.57 Aligned_cols=140 Identities=14% Similarity=0.106 Sum_probs=68.7
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEE-EcCcchhHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~-~~~~~~~~~ 214 (475)
|.-+++.|.||.|||..+ +-++..+.. ..+..++++ ....-..|+..++.....++....+ .|.....++
T Consensus 203 G~livIaarpg~GKT~~a-l~ia~~~a~-------~~g~~v~~f-SlEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~ 273 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFA-LNIAQNVAT-------KTDKNVAIF-SLEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDW 273 (448)
T ss_pred CceEEEEeCCCCCchHHH-HHHHHHHHH-------hCCCeEEEE-eCCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHH
Confidence 345899999999999644 444433321 113445554 5566667777776443333332211 122222221
Q ss_pred H------HHhhcCCcEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccccCC-----chHHHHHHHHhCC----
Q 011901 215 M------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-----FAEDVEVILERLP---- 274 (475)
Q Consensus 215 ~------~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~-----~~~~~~~i~~~~~---- 274 (475)
. ..+ .+..+.|. |++.+...+.+-.....++++||||=.|.+...+ ....+..+.+.++
T Consensus 274 ~~~~~a~~~l-~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAk 352 (448)
T PRK05748 274 PKLTIAMGSL-SDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAK 352 (448)
T ss_pred HHHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 1 111 22345553 3444444333211111257899999999875321 1223334433331
Q ss_pred -CCCcEEEEccC
Q 011901 275 -QNRQSMMFSAT 285 (475)
Q Consensus 275 -~~~~~i~~SAT 285 (475)
-++.++++|-.
T Consensus 353 e~~i~vi~lsQl 364 (448)
T PRK05748 353 ELKVPVIALSQL 364 (448)
T ss_pred HhCCeEEEeccc
Confidence 24566666665
No 407
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.16 Score=48.42 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=28.4
Q ss_pred CcccCCCCCHHHHHHHHHcCCCC--CcHHHHHhhhhHhcCCcEEEEcCCCCchhHHH
Q 011901 99 LDISKLDISQDIVAALARRGISK--LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~--l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
..+...-|++.+.+.+...-+.. --.+| .. -+|+++.||+|+|||+++
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~h~-----ap--fRNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKKHQ-----AP--FRNILFYGPPGTGKTMFA 401 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhccccccc-----ch--hhheeeeCCCCCCchHHH
Confidence 33666777777776665421110 00111 00 158999999999999755
No 408
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.90 E-value=0.3 Score=52.96 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.+.++.||+|+|||..+
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 47999999999999755
No 409
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=93.79 E-value=0.58 Score=43.63 Aligned_cols=82 Identities=16% Similarity=0.271 Sum_probs=63.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcch-hHHHHHhh-cCCcEEEEccHHHHHHHHhCCCCCCCccEE
Q 011901 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPI-SHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~v 249 (475)
++..+++.+|+.+..+|.+..+++.++......+...+.. .++...+. +..+|+|+| ..++++.. +.+++..
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTT-----TILERGVT-fp~vdV~ 377 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITT-----TILERGVT-FPNVDVF 377 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHcCceEEEEEe-----ehhhcccc-cccceEE
Confidence 4667999999999999999999888887776666655443 33444444 458999999 78877654 7899999
Q ss_pred EEeccccccc
Q 011901 250 VLDEADQMLS 259 (475)
Q Consensus 250 ViDE~H~~~~ 259 (475)
|++--|++..
T Consensus 378 Vlgaeh~vfT 387 (441)
T COG4098 378 VLGAEHRVFT 387 (441)
T ss_pred EecCCccccc
Confidence 9999998754
No 410
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.78 E-value=1.2 Score=37.93 Aligned_cols=53 Identities=11% Similarity=0.146 Sum_probs=27.0
Q ss_pred CCccEEEEeccccccc-CCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHh
Q 011901 244 SEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNK 296 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 296 (475)
.+.+++|+|....... ......+..+........-++.++++-..........
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~ 134 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKA 134 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHH
Confidence 3567899999886421 1123333333333334445666677644443333333
No 411
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.76 E-value=0.13 Score=49.15 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=26.8
Q ss_pred CCcHHHHHhhhhHhc----C---CcEEEEcCCCCchhHHHHHH
Q 011901 121 KLFPIQKAVLEPAMQ----G---RDMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~----~---~~~li~~~tGsGKT~~~~~~ 156 (475)
.++|||...+..+.. | +-.++.||.|+||+..+...
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~ 44 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHH
Confidence 367888888887653 3 24789999999999766443
No 412
>PF05729 NACHT: NACHT domain
Probab=93.75 E-value=0.46 Score=39.99 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=16.6
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGIPILDKII 162 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~l~ 162 (475)
-++|.|++|+|||... ..+...+.
T Consensus 2 ~l~I~G~~G~GKStll-~~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL-RKLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHH-HHHHHHHH
Confidence 3789999999999644 34444443
No 413
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.72 E-value=0.34 Score=45.84 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=32.6
Q ss_pred ccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCC
Q 011901 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 228 T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 286 (475)
....+.+.+..... ....+++|||++|.|... ....+.+.++.-+ +..++++|..+
T Consensus 108 ~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~~ 163 (314)
T PRK07399 108 QIREIKRFLSRPPL-EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPSP 163 (314)
T ss_pred HHHHHHHHHccCcc-cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECCh
Confidence 33344455544433 357899999999998543 3344455555545 55555555443
No 414
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.71 E-value=0.5 Score=49.07 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=14.7
Q ss_pred cEEEEcCCCCchhHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~ 155 (475)
..|+.||.|+|||.++.+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARI 57 (585)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 469999999999976543
No 415
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.68 E-value=0.45 Score=51.01 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++.+++.||+|+|||..+
T Consensus 211 ~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCceEEEECCCCCChHHHH
Confidence 3467999999999999743
No 416
>PRK08840 replicative DNA helicase; Provisional
Probab=93.67 E-value=0.91 Score=45.52 Aligned_cols=117 Identities=18% Similarity=0.150 Sum_probs=57.6
Q ss_pred HhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEE-EcCcch
Q 011901 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPI 211 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~-~~~~~~ 211 (475)
+..|.=+++.|.||.|||..+ +-+...+.. ..+..++++. .+.-..|+..++-....++...-+ .|..+.
T Consensus 214 ~~~g~LiviaarPg~GKTafa-lnia~~~a~-------~~~~~v~~fS-lEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~ 284 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFA-MNLCENAAM-------DQDKPVLIFS-LEMPAEQLMMRMLASLSRVDQTKIRTGQLDD 284 (464)
T ss_pred CCCCceEEEEeCCCCchHHHH-HHHHHHHHH-------hCCCeEEEEe-ccCCHHHHHHHHHHhhCCCCHHHHhcCCCCH
Confidence 333445788999999999654 333333221 1144465554 456667777666544333322211 222222
Q ss_pred hHHHH------HhhcCCcEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011901 212 SHQMR------ALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 212 ~~~~~------~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~ 258 (475)
.++.+ .+.....+.|- |...+...+.+-......+++||||=.|.+.
T Consensus 285 ~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 285 EDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 22211 12123345553 2333433332211112257899999999875
No 417
>CHL00176 ftsH cell division protein; Validated
Probab=93.65 E-value=0.33 Score=50.55 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.||+|+|||..+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56999999999999754
No 418
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.63 E-value=2.6 Score=40.01 Aligned_cols=55 Identities=13% Similarity=0.225 Sum_probs=31.4
Q ss_pred CCCccEEEEecccccccCC-chHHHHHHHHhC------CCCCcEEEEccCCChhHHHHHHhh
Q 011901 243 LSEVQFVVLDEADQMLSVG-FAEDVEVILERL------PQNRQSMMFSATMPPWIRSLTNKY 297 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~-~~~~~~~i~~~~------~~~~~~i~~SAT~~~~~~~~~~~~ 297 (475)
..++++|++|=+-++.... .-..+..+.+.. .+...++.++||........+..+
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 3567889999988764321 223444444332 233346888999765444444443
No 419
>PRK08506 replicative DNA helicase; Provisional
Probab=93.63 E-value=0.7 Score=46.55 Aligned_cols=113 Identities=18% Similarity=0.088 Sum_probs=58.1
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEE-EcCcchhHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~-~~~~~~~~~ 214 (475)
|.-+++.|.||.|||..++-.+. .+.+ .+..++++ ....-..|+..++-....++....+ .|..+...+
T Consensus 192 G~LivIaarpg~GKT~fal~ia~-~~~~--------~g~~V~~f-SlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~ 261 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMAL-KALN--------QDKGVAFF-SLEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEW 261 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHH-HHHh--------cCCcEEEE-eCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHH
Confidence 34488899999999965443333 3322 24446655 4456677777776554333322111 122222222
Q ss_pred H------HHhhcCCcEEEE-----ccHHHHHHHHhCCCCCCCccEEEEeccccccc
Q 011901 215 M------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 215 ~------~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~ 259 (475)
. ..+ .+..+.|- |...+...+.+-......+++||||=.+.+..
T Consensus 262 ~~~~~a~~~l-~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 262 ERLSDACDEL-SKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHHHHH-HcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 1 111 12345543 44445444433111123578999999997753
No 420
>PRK09087 hypothetical protein; Validated
Probab=93.59 E-value=0.3 Score=43.90 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=24.4
Q ss_pred cEEEEecccccccCCchHHHHHHHHhCCC-CCcEEEEccCCChh
Q 011901 247 QFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQSMMFSATMPPW 289 (475)
Q Consensus 247 ~~vViDE~H~~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT~~~~ 289 (475)
+++++|++|.+.. -...+..++..+.. ..++++.|.|+++.
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCChHH
Confidence 4799999997632 23445666655544 45555555555543
No 421
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.59 E-value=0.25 Score=48.66 Aligned_cols=19 Identities=32% Similarity=0.223 Sum_probs=15.5
Q ss_pred cEEEEcCCCCchhHHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~ 156 (475)
..++.||.|+|||.++.+.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4889999999999866443
No 422
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=93.52 E-value=0.41 Score=48.70 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=31.0
Q ss_pred ccCCcccCCCCCHHHHHHHHHcC--CCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHH
Q 011901 96 DEGLDISKLDISQDIVAALARRG--ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~--~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
.+...|+++.-.+..++.+...- +..+..++... ....+.+++.||+|+|||..+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 34566777766666665554311 11222222211 112357999999999999754
No 423
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.51 E-value=0.56 Score=48.21 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=14.9
Q ss_pred cEEEEcCCCCchhHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~ 155 (475)
..|+.||.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 489999999999976643
No 424
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.51 E-value=0.74 Score=46.01 Aligned_cols=139 Identities=17% Similarity=0.114 Sum_probs=67.6
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEE-EcCcchhHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~-~~~~~~~~~ 214 (475)
|.-+++.|++|+|||..+ +-++..+.. ..+..+++++ ...-..|+.+++.....++....+ .|.....+.
T Consensus 195 G~l~vi~g~pg~GKT~~~-l~~a~~~a~-------~~g~~vl~~S-lEm~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~ 265 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFA-LNIAENAAI-------KEGKPVAFFS-LEMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDW 265 (434)
T ss_pred CeEEEEEeCCCCChHHHH-HHHHHHHHH-------hCCCeEEEEe-CcCCHHHHHHHHHHHhcCCCHHHhccCCCCHHHH
Confidence 345899999999999644 433333322 1144455554 455566666665554333332221 222222111
Q ss_pred H------HHhhcCCcEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccccCC----chHHHHHHHHhCC-----
Q 011901 215 M------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERLP----- 274 (475)
Q Consensus 215 ~------~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~----~~~~~~~i~~~~~----- 274 (475)
. ..+. +..+.|. |.+.+...+.+-.. -..+++||||=.+.+.... ....+..+.+.+.
T Consensus 266 ~~~~~a~~~l~-~~~l~i~d~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e 343 (434)
T TIGR00665 266 EKLTSAAGKLS-EAPLYIDDTPGLTITELRAKARRLKR-EHGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKE 343 (434)
T ss_pred HHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 1111 2344442 34445444332111 1247899999988775322 2233444433332
Q ss_pred CCCcEEEEccC
Q 011901 275 QNRQSMMFSAT 285 (475)
Q Consensus 275 ~~~~~i~~SAT 285 (475)
-++.++++|-.
T Consensus 344 ~~i~vi~lsql 354 (434)
T TIGR00665 344 LNVPVIALSQL 354 (434)
T ss_pred hCCeEEEEecc
Confidence 35666666654
No 425
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.49 E-value=0.45 Score=51.62 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.+.++.||+|+|||.++
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 57999999999999765
No 426
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=93.46 E-value=0.84 Score=44.26 Aligned_cols=21 Identities=38% Similarity=0.366 Sum_probs=17.8
Q ss_pred HhcCCcEEEEcCCCCchhHHH
Q 011901 133 AMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~ 153 (475)
.-.+.++++.|+||+||++.+
T Consensus 98 ap~~~~vLi~GetGtGKel~A 118 (403)
T COG1221 98 APSGLPVLIIGETGTGKELFA 118 (403)
T ss_pred CCCCCcEEEecCCCccHHHHH
Confidence 345688999999999999865
No 427
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.43 E-value=0.26 Score=45.39 Aligned_cols=139 Identities=16% Similarity=0.096 Sum_probs=66.8
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcC-cchhHHH
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG-TPISHQM 215 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 215 (475)
.=+++.|.||.|||..++-.+...+.+ .+..+++++.- .-..++..++-....++...-+..+ ....+..
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~--------~~~~vly~SlE-m~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~ 90 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALN--------GGYPVLYFSLE-MSEEELAARLLARLSGVPYNKIRSGDLSDEEFE 90 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT--------TSSEEEEEESS-S-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHH
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHh--------cCCeEEEEcCC-CCHHHHHHHHHHHhhcchhhhhhccccCHHHHH
Confidence 448999999999996554444444332 24667777752 2233333333322222221111111 1111111
Q ss_pred H------HhhcCCcEEE-E----ccHHHHHHHHhCCCCCCCccEEEEecccccccC----CchHHHHHHHHhCC-----C
Q 011901 216 R------ALDYGVDAVV-G----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLP-----Q 275 (475)
Q Consensus 216 ~------~~~~~~~Ilv-~----T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~----~~~~~~~~i~~~~~-----~ 275 (475)
+ .+. ...+.+ . |++.+...+..-......+++||||=.|.+... +....+..+.+.++ .
T Consensus 91 ~~~~~~~~l~-~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~ 169 (259)
T PF03796_consen 91 RLQAAAEKLS-DLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKEL 169 (259)
T ss_dssp HHHHHHHHHH-TSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-hCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 1 111 223443 3 344555444432222267889999999987763 23333444433332 2
Q ss_pred CCcEEEEccC
Q 011901 276 NRQSMMFSAT 285 (475)
Q Consensus 276 ~~~~i~~SAT 285 (475)
+..++++|..
T Consensus 170 ~i~vi~~sQl 179 (259)
T PF03796_consen 170 NIPVIALSQL 179 (259)
T ss_dssp TSEEEEEEEB
T ss_pred CCeEEEcccc
Confidence 4566666654
No 428
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.40 E-value=0.36 Score=49.64 Aligned_cols=19 Identities=37% Similarity=0.261 Sum_probs=15.2
Q ss_pred cEEEEcCCCCchhHHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~ 156 (475)
..|++||.|+|||.++-+.
T Consensus 40 ayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999766433
No 429
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.39 E-value=0.43 Score=44.49 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchhHHHHH
Q 011901 137 RDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~ 155 (475)
+.+++.||||+|||.+...
T Consensus 195 ~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588999999999976543
No 430
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.28 E-value=0.44 Score=43.94 Aligned_cols=15 Identities=20% Similarity=0.115 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCchhH
Q 011901 137 RDMIGRARTGTGKTL 151 (475)
Q Consensus 137 ~~~li~~~tGsGKT~ 151 (475)
+++++.|++|||||.
T Consensus 112 ~~~~i~g~~g~GKtt 126 (270)
T TIGR02858 112 LNTLIISPPQCGKTT 126 (270)
T ss_pred eEEEEEcCCCCCHHH
Confidence 579999999999996
No 431
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=93.26 E-value=1.3 Score=45.05 Aligned_cols=124 Identities=20% Similarity=0.204 Sum_probs=76.6
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHH----HhhCCCCceEEEEcCcchh
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF----HESAPSLDTICVYGGTPIS 212 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~----~~~~~~~~~~~~~~~~~~~ 212 (475)
+-.+..-|--.|||. ++.|++..++.. -.|-++.+++..+.-++-+++++ ++|++.-.+...-+
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~----- 270 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKN------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD----- 270 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHh------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC-----
Confidence 456778899999994 778888777662 34778999999998887776664 55665332221111
Q ss_pred HHHHHhhcCCcEEEEccHH-----HHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCC-CCCcEEEEccC
Q 011901 213 HQMRALDYGVDAVVGTPGR-----VIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSAT 285 (475)
Q Consensus 213 ~~~~~~~~~~~Ilv~T~~~-----l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT 285 (475)
-.|.+.-|+. +....+.+...-++++++++||||-+. ...+..++..+. +++.+|..|.|
T Consensus 271 ---------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 271 ---------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred ---------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCC
Confidence 1222222211 111123334456789999999999763 344455555443 46777888877
No 432
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.25 E-value=0.71 Score=49.74 Aligned_cols=17 Identities=24% Similarity=0.016 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+++.||+|+|||..+
T Consensus 348 ~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLG 364 (775)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999754
No 433
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=93.23 E-value=0.41 Score=46.56 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.2
Q ss_pred hhHhcCCcEEEEcCCCCchhHHHH
Q 011901 131 EPAMQGRDMIGRARTGTGKTLAFG 154 (475)
Q Consensus 131 ~~i~~~~~~li~~~tGsGKT~~~~ 154 (475)
+.+.++.|++..||+|+|||..|.
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHH
Confidence 556677899999999999997664
No 434
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.19 E-value=0.2 Score=53.20 Aligned_cols=60 Identities=22% Similarity=0.395 Sum_probs=50.2
Q ss_pred cCCcEEEEecChhhHHHHHHHHHc-----c-CCcc-cccCCCCHHHHHHHHHHHhcCCCcEEEecCc
Q 011901 343 KGGKCIVFTQTKRDADRLAHAMAK-----S-YNCE-PLHGDISQSQRERTLSAFRDGRFNILIATDV 402 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~-~~~~-~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 402 (475)
+|.++++.+||..-+.+.++.|.+ + ..+. .+||.++.++++.+++.|.+|..+|+|+|+.
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 578999999999888888877754 1 2222 2899999999999999999999999999974
No 435
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.18 E-value=0.16 Score=49.08 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKII 162 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~ 162 (475)
+..++++||||||||. .+.+++..+.
T Consensus 149 ~GlilI~G~TGSGKTT-~l~al~~~i~ 174 (372)
T TIGR02525 149 AGLGLICGETGSGKST-LAASIYQHCG 174 (372)
T ss_pred CCEEEEECCCCCCHHH-HHHHHHHHHH
Confidence 3468999999999995 4455655553
No 436
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.18 E-value=0.22 Score=42.90 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=28.7
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCC-CcEEEEcc
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN-RQSMMFSA 284 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~-~~~i~~SA 284 (475)
..+.+++++||....++......+...+..+... .++++.|-
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 3567889999999888776666666666655333 55666544
No 437
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.18 E-value=1.2 Score=49.08 Aligned_cols=45 Identities=20% Similarity=0.437 Sum_probs=35.3
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCCCh
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 288 (475)
..--+||||++|.+.+......+..+++..+.+.++|+.|-+.++
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 344579999999986665566788888889988999888877544
No 438
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.17 E-value=0.14 Score=49.25 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=18.7
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHH
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l 161 (475)
.+..++++||||||||... ..++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 3456999999999999643 4455444
No 439
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.16 E-value=0.32 Score=44.30 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=16.7
Q ss_pred HhcCCcEEEEcCCCCchhH
Q 011901 133 AMQGRDMIGRARTGTGKTL 151 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~ 151 (475)
+..|+.+++.|+.|+|||.
T Consensus 13 i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 4467889999999999996
No 440
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.13 E-value=0.99 Score=43.84 Aligned_cols=144 Identities=18% Similarity=0.175 Sum_probs=62.3
Q ss_pred EEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHH----HHHHHHhhCCC-CceEEE-EcCcchhH
Q 011901 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ----VEKEFHESAPS-LDTICV-YGGTPISH 213 (475)
Q Consensus 140 li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q----~~~~~~~~~~~-~~~~~~-~~~~~~~~ 213 (475)
++.++.|+|||......++..+.... .+..+++. |+..-+.+ ....+....+. +..... .....
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~------~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 70 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP------PGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRK--- 70 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS------S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSE---
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC------CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCc---
Confidence 57899999999988777776665411 12345555 66555544 23334444433 221111 00110
Q ss_pred HHHHhhcCCcEEEEccHHH--HHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCC--Chh
Q 011901 214 QMRALDYGVDAVVGTPGRV--IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM--PPW 289 (475)
Q Consensus 214 ~~~~~~~~~~Ilv~T~~~l--~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~--~~~ 289 (475)
..+.++..|.+.+.+.= ..-+. =..++++++||+-...+..+...+......... ...+..|.|+ ...
T Consensus 71 --~~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~~~~~ 142 (384)
T PF03237_consen 71 --IILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPNPGGW 142 (384)
T ss_dssp --EEETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSH
T ss_pred --EEecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCCCCCc
Confidence 01145556666664321 11111 256788999998876554333333333333322 2222444443 344
Q ss_pred HHHHHHhhcCCC
Q 011901 290 IRSLTNKYLKNP 301 (475)
Q Consensus 290 ~~~~~~~~~~~~ 301 (475)
...+........
T Consensus 143 ~~~~~~~~~~~~ 154 (384)
T PF03237_consen 143 FYEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHHCTS
T ss_pred eeeeeehhhcCC
Confidence 444555444443
No 441
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=93.10 E-value=0.12 Score=44.28 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=22.2
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCC
Q 011901 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (475)
.++.||++||||.-. +-.+..... .+.+++++-|.
T Consensus 4 ~~i~GpM~sGKS~eL-i~~~~~~~~--------~~~~v~~~kp~ 38 (176)
T PF00265_consen 4 EFITGPMFSGKSTEL-IRRIHRYEI--------AGKKVLVFKPA 38 (176)
T ss_dssp EEEEESTTSSHHHHH-HHHHHHHHH--------TT-EEEEEEES
T ss_pred EEEECCcCChhHHHH-HHHHHHHHh--------CCCeEEEEEec
Confidence 478899999999633 333332221 36678888884
No 442
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.07 E-value=0.15 Score=46.95 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=26.2
Q ss_pred CcHHHHHhhhhHhcC--CcEEEEcCCCCchhHHHHHHHHHHH
Q 011901 122 LFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~l 161 (475)
+.+.|.+.+..++.. ..+++.|+||||||.. +..++..+
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 345666667665542 3489999999999964 34455554
No 443
>PRK13764 ATPase; Provisional
Probab=93.04 E-value=0.15 Score=52.33 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHH
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l 161 (475)
..++++++|+||||||. ++.+++..+
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHH
Confidence 35679999999999996 445555554
No 444
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.01 E-value=0.45 Score=48.96 Aligned_cols=137 Identities=20% Similarity=0.257 Sum_probs=72.8
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEE-EcCCHHHHHHHHHHHHhhCCC--------CceEEE
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV-LAPTRELAKQVEKEFHESAPS--------LDTICV 205 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~li-l~Pt~~La~q~~~~~~~~~~~--------~~~~~~ 205 (475)
.|+.+-+.||.|||||.+ +.++.++++ ....++++ =+|-+.+-.++.+.--..... +.--..
T Consensus 493 pGe~vALVGPSGsGKSTi--asLL~rfY~-------PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~ 563 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTI--ASLLLRFYD-------PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIA 563 (716)
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHhcC-------CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHh
Confidence 467899999999999984 455666654 22333332 356666655555532211110 000111
Q ss_pred EcCcchhHH--------------HHHhhcCCcEEEEccHHHH------HHHHhCCCCCCCccEEEEecccccccCCchHH
Q 011901 206 YGGTPISHQ--------------MRALDYGVDAVVGTPGRVI------DLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265 (475)
Q Consensus 206 ~~~~~~~~~--------------~~~~~~~~~Ilv~T~~~l~------~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~ 265 (475)
||-.+...+ .....++++-.||..+..+ ++..... -+++..++|+|||-.-+|......
T Consensus 564 YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARA-Llr~P~VLILDEATSALDaeSE~l 642 (716)
T KOG0058|consen 564 YGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARA-LLRNPRVLILDEATSALDAESEYL 642 (716)
T ss_pred cCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHH-HhcCCCEEEEechhhhcchhhHHH
Confidence 222221111 1122234555555554321 0000011 166788999999998888777777
Q ss_pred HHHHHHhCCCCCcEEE
Q 011901 266 VEVILERLPQNRQSMM 281 (475)
Q Consensus 266 ~~~i~~~~~~~~~~i~ 281 (475)
++..+.++..++-++.
T Consensus 643 Vq~aL~~~~~~rTVlv 658 (716)
T KOG0058|consen 643 VQEALDRLMQGRTVLV 658 (716)
T ss_pred HHHHHHHhhcCCeEEE
Confidence 7888877766643333
No 445
>PRK10867 signal recognition particle protein; Provisional
Probab=92.95 E-value=1.2 Score=44.01 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=15.7
Q ss_pred cEEEEcCCCCchhHHHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~ 157 (475)
-++++|++|+|||.++.-.+
T Consensus 102 vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47889999999998664443
No 446
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.93 E-value=0.82 Score=43.73 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=25.1
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEcc
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 284 (475)
....+++||||+|+|... ....+.+.++.-++...+++.|.
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeC
Confidence 456789999999997543 23334444444445555555444
No 447
>COG1485 Predicted ATPase [General function prediction only]
Probab=92.93 E-value=2.2 Score=40.32 Aligned_cols=47 Identities=21% Similarity=0.207 Sum_probs=30.2
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhC-CCCCcEEEEccCCChhH
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWI 290 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~ 290 (475)
..+.+++.+||.|- .+-+-...+..+++.+ .....++..|-|.|+.+
T Consensus 128 ~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 128 AAETRVLCFDEFEV-TDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred HhcCCEEEeeeeee-cChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 45677899999994 3332233344444433 55778888888888754
No 448
>PRK08006 replicative DNA helicase; Provisional
Probab=92.91 E-value=1.5 Score=44.13 Aligned_cols=141 Identities=16% Similarity=0.114 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEE-EcCcchhHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~-~~~~~~~~~ 214 (475)
|.=+++.|.+|.|||..+ +-+...+.. ..+..++++. .+.-..|+..++-....++...-+ .|..+..++
T Consensus 224 G~LiiIaarPgmGKTafa-lnia~~~a~-------~~g~~V~~fS-lEM~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~ 294 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFA-MNLCENAAM-------LQDKPVLIFS-LEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDW 294 (471)
T ss_pred CcEEEEEeCCCCCHHHHH-HHHHHHHHH-------hcCCeEEEEe-ccCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHH
Confidence 344788999999999644 433333321 1144466554 456667777666544333332222 222222222
Q ss_pred HH------HhhcCCcEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccccCC----chHHHHHHHHhCC-----
Q 011901 215 MR------ALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERLP----- 274 (475)
Q Consensus 215 ~~------~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~----~~~~~~~i~~~~~----- 274 (475)
.+ .+.....+.|- |+..+...+.+-......+++||||=.|.+...+ ....+..+.+.++
T Consensus 295 ~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAke 374 (471)
T PRK08006 295 ARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKE 374 (471)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 11 12123445553 3444444333211112357899999999775321 2233444433332
Q ss_pred CCCcEEEEccC
Q 011901 275 QNRQSMMFSAT 285 (475)
Q Consensus 275 ~~~~~i~~SAT 285 (475)
-++.++++|-.
T Consensus 375 l~ipVi~LsQL 385 (471)
T PRK08006 375 LQVPVVALSQL 385 (471)
T ss_pred hCCeEEEEEec
Confidence 24566666643
No 449
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.89 E-value=0.79 Score=44.28 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=16.8
Q ss_pred HhcCCcEEEEcCCCCchhHH
Q 011901 133 AMQGRDMIGRARTGTGKTLA 152 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~ 152 (475)
+-.|+..++.||.|+|||..
T Consensus 166 IGkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred cccCceEEEeCCCCCChhHH
Confidence 34678899999999999963
No 450
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.87 E-value=0.69 Score=44.82 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=17.0
Q ss_pred HhcCCcEEEEcCCCCchhHH
Q 011901 133 AMQGRDMIGRARTGTGKTLA 152 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~ 152 (475)
+-.|+.+++.||+|+|||..
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred eCCCCEEEEECCCCCChhHH
Confidence 44678899999999999964
No 451
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.84 E-value=0.088 Score=51.67 Aligned_cols=48 Identities=25% Similarity=0.214 Sum_probs=37.4
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
++++.|+||||||..+++|.+-.. +..++++-|.-++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----------CCCEEEEccchhHHHHHHHHHHHc
Confidence 578999999999999888865431 345888889889988777666654
No 452
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.82 E-value=0.18 Score=52.36 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCchhHHHHH
Q 011901 137 RDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~ 155 (475)
..+|+.||.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 3579999999999986643
No 453
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.78 E-value=0.54 Score=48.76 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.||+|+|||.++
T Consensus 112 illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 112 ILLITGPSGCGKSTTI 127 (637)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999755
No 454
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.77 E-value=0.077 Score=45.58 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=28.7
Q ss_pred HhhcCCcEEEEccHHHHHHHHhCCCC--CCCccEEEEeccccccc
Q 011901 217 ALDYGVDAVVGTPGRVIDLIKRNALN--LSEVQFVVLDEADQMLS 259 (475)
Q Consensus 217 ~~~~~~~Ilv~T~~~l~~~l~~~~~~--~~~~~~vViDE~H~~~~ 259 (475)
.....++|+|+++..|++-..+.... ..+-.+||+||||.+.+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 33455899999999987654433221 23446899999998755
No 455
>PF12846 AAA_10: AAA-like domain
Probab=92.70 E-value=0.2 Score=47.13 Aligned_cols=42 Identities=24% Similarity=0.525 Sum_probs=30.0
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHH
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (475)
.++++.|+||||||.... .++..+.. .+..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~--------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR--------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH--------cCCCEEEEcCCchHHH
Confidence 579999999999997665 44444433 3667888877755554
No 456
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.69 E-value=0.34 Score=50.15 Aligned_cols=19 Identities=32% Similarity=0.223 Sum_probs=15.6
Q ss_pred cEEEEcCCCCchhHHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~ 156 (475)
..|+.||.|+|||.++.+.
T Consensus 40 a~Lf~Gp~GvGKttlA~~l 58 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVF 58 (620)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4889999999999866443
No 457
>PHA00012 I assembly protein
Probab=92.68 E-value=1.4 Score=41.33 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=19.9
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHHh
Q 011901 138 DMIGRARTGTGKTLAFGIPILDKIIK 163 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~l~~ 163 (475)
..++.|..|||||+.+..-+...+.+
T Consensus 3 iylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 3 VYVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHc
Confidence 35889999999999887766665533
No 458
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.66 E-value=0.076 Score=59.54 Aligned_cols=93 Identities=25% Similarity=0.421 Sum_probs=74.3
Q ss_pred cEEEEecChhhHHHHHHHHHcc--CCcccccCCCCH-----------HHHHHHHHHHhcCCCcEEEecCccccCCCCCCC
Q 011901 346 KCIVFTQTKRDADRLAHAMAKS--YNCEPLHGDISQ-----------SQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (475)
Q Consensus 346 ~~lVf~~~~~~~~~l~~~L~~~--~~~~~~h~~~~~-----------~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~ 412 (475)
-.++|++....+....+.+... +....+.|.+.+ ..+..++..|.....++|++|.++++|+|++-+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 5689999988888888777643 222334443321 234678888999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhhccCCCC
Q 011901 413 DLIIHYELPNTSETFVHRTGRTGRAG 438 (475)
Q Consensus 413 ~~vi~~~~p~~~~~~~Q~~GR~gR~~ 438 (475)
+.++.++.|.....|+|..||+-+.+
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999997753
No 459
>PRK04328 hypothetical protein; Provisional
Probab=92.65 E-value=0.25 Score=45.18 Aligned_cols=53 Identities=15% Similarity=0.148 Sum_probs=34.7
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
.|..+++.|++|+|||..++-.+...+.+ |..++++. +.+-..++.+.+..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~---------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc---------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 34668999999999997655444444422 55567766 5555666666666554
No 460
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=0.32 Score=48.88 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+|+.||+|+|||..+
T Consensus 224 rGvLlHGPPGCGKT~lA 240 (802)
T KOG0733|consen 224 RGVLLHGPPGCGKTSLA 240 (802)
T ss_pred CceeeeCCCCccHHHHH
Confidence 56999999999999744
No 461
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.58 E-value=0.14 Score=51.67 Aligned_cols=50 Identities=26% Similarity=0.287 Sum_probs=39.6
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
.++++.|+||||||..+++|.+-.. ...+++.-|--+|.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~-----------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY-----------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc-----------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 4799999999999999998876321 2258888899899888877777664
No 462
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.56 E-value=0.49 Score=48.71 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=15.7
Q ss_pred hcCCcEEEEcCCCCchhH
Q 011901 134 MQGRDMIGRARTGTGKTL 151 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~ 151 (475)
..|+.+.+.|++|||||.
T Consensus 359 ~~G~~vaIvG~SGsGKST 376 (529)
T TIGR02868 359 PPGERVAILGPSGSGKST 376 (529)
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 356779999999999997
No 463
>PRK10436 hypothetical protein; Provisional
Probab=92.55 E-value=0.16 Score=50.55 Aligned_cols=39 Identities=28% Similarity=0.415 Sum_probs=26.8
Q ss_pred CcHHHHHhhhhHhcC--CcEEEEcCCCCchhHHHHHHHHHHH
Q 011901 122 LFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~l 161 (475)
+.+.|.+.+..+... .-+++.||||||||.+. .+++..+
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 456676777665543 34899999999999754 4555554
No 464
>PRK08760 replicative DNA helicase; Provisional
Probab=92.50 E-value=0.83 Score=46.02 Aligned_cols=111 Identities=16% Similarity=0.119 Sum_probs=56.7
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEE-EcCcchhHHH
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQM 215 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 215 (475)
.=+++.|.||.|||..+ +-+...+.. ..+..+++++ .+.-..|+..++.....++....+ .|..+..++.
T Consensus 230 ~LivIaarPg~GKTafa-l~iA~~~a~-------~~g~~V~~fS-lEMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~ 300 (476)
T PRK08760 230 DLIILAARPAMGKTTFA-LNIAEYAAI-------KSKKGVAVFS-MEMSASQLAMRLISSNGRINAQRLRTGALEDEDWA 300 (476)
T ss_pred ceEEEEeCCCCChhHHH-HHHHHHHHH-------hcCCceEEEe-ccCCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHH
Confidence 44788999999999644 433333321 1134455554 455566777776655433332212 2222222111
Q ss_pred ------HHhhcCCcEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011901 216 ------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 216 ------~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~ 258 (475)
..+ ....+.|. |++.+...+.+-.. -..+++||||=.+.+.
T Consensus 301 ~~~~a~~~l-~~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 301 RVTGAIKML-KETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHH-hcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 111 22345443 34455444332111 2357899999988774
No 465
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.47 E-value=0.33 Score=40.14 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=23.9
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhC
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~ 273 (475)
..+..++++||--.-++......+..+++.+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 4567889999999877776666777777766
No 466
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.45 E-value=0.26 Score=42.77 Aligned_cols=38 Identities=32% Similarity=0.454 Sum_probs=27.7
Q ss_pred HHHcCCCCCcHHHHHhhhhHh-cCCcEEEEcCCCCchhHHH
Q 011901 114 LARRGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 114 l~~~~~~~l~~~Q~~~i~~i~-~~~~~li~~~tGsGKT~~~ 153 (475)
|.+.| .+++.|.+.+.... .+..+++.|+||||||...
T Consensus 4 l~~~g--~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 4 LIAQG--TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHcC--CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 34444 35677777777655 5678999999999999643
No 467
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.43 E-value=0.14 Score=47.54 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=27.3
Q ss_pred hcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHH
Q 011901 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
..+.++++.|+||||||. ++-.++..+-. ...+++.+-.+.++
T Consensus 125 ~~~~~ili~G~tGSGKTT-~l~all~~i~~--------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTT-LLNALLEEIPP--------EDERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHH-HHHHHHHHCHT--------TTSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccch-HHHHHhhhccc--------cccceEEeccccce
Confidence 456789999999999996 43555554422 12456666655544
No 468
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=92.42 E-value=0.23 Score=48.59 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=31.2
Q ss_pred hcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHH
Q 011901 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (475)
...+++++.|.||||||. ++..++..+... +.+++|.=|.-+.....++
T Consensus 13 ~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~--------g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQ-AIRHLLDQIRAR--------GDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp GGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT--------T-EEEEEEETTHHHHHH--
T ss_pred hhhCcEEEECCCCCCHHH-HHHHHHHHHHHc--------CCEEEEEECCchHHHHhcC
Confidence 445789999999999995 556777777552 4456777776666554443
No 469
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=1.1 Score=40.08 Aligned_cols=17 Identities=35% Similarity=0.471 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.++..||+|+|||+.+
T Consensus 206 KGvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 206 KGVLMYGPPGTGKTLMA 222 (424)
T ss_pred CceEeeCCCCCcHHHHH
Confidence 67999999999999855
No 470
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.26 E-value=0.47 Score=39.33 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=18.4
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHh
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIK 163 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~ 163 (475)
+.+.+.|++|+|||.. +.-+...+.+
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~ 31 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLRE 31 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHh
Confidence 4689999999999964 3444445433
No 471
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.16 E-value=0.38 Score=45.47 Aligned_cols=55 Identities=27% Similarity=0.230 Sum_probs=36.0
Q ss_pred CCcHHHHHhhh-hHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHH
Q 011901 121 KLFPIQKAVLE-PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 121 ~l~~~Q~~~i~-~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
.+++.|..-+. .+..+++++++|+||||||. ++.+++..+ ....+++.+=-|.++
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~I---------p~~~rivtIEdt~E~ 182 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFI---------PPEERIVTIEDTPEL 182 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhC---------CchhcEEEEeccccc
Confidence 46667755555 45567899999999999995 556666554 223445555555444
No 472
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.15 E-value=0.96 Score=44.07 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchhHHHH
Q 011901 137 RDMIGRARTGTGKTLAFG 154 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~ 154 (475)
+.+++.||+|+|||..+.
T Consensus 40 ~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 40 QALLFCGPRGVGKTTCAR 57 (367)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368999999999997553
No 473
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.09 E-value=2.4 Score=41.99 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=16.4
Q ss_pred cEEEEcCCCCchhHHHHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGIPIL 158 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l 158 (475)
-++++|++|+|||.++.-.+.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 488999999999987654443
No 474
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.04 E-value=0.44 Score=42.73 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=22.7
Q ss_pred cEEEEecccccc-cC----CchHHHHHHHHhCCC-CCcEEEEccCC
Q 011901 247 QFVVLDEADQML-SV----GFAEDVEVILERLPQ-NRQSMMFSATM 286 (475)
Q Consensus 247 ~~vViDE~H~~~-~~----~~~~~~~~i~~~~~~-~~~~i~~SAT~ 286 (475)
-+||+||+|.+. .. .+...+..++..... ....++++++.
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 679999999988 21 244455555555322 23345566664
No 475
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=91.98 E-value=0.2 Score=47.66 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.||+|+|||+.+
T Consensus 150 gllL~GPPGcGKTllA 165 (413)
T PLN00020 150 ILGIWGGKGQGKSFQC 165 (413)
T ss_pred EEEeeCCCCCCHHHHH
Confidence 4789999999999855
No 476
>PRK05636 replicative DNA helicase; Provisional
Probab=91.94 E-value=1.2 Score=45.20 Aligned_cols=111 Identities=12% Similarity=0.098 Sum_probs=52.9
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEE-cCcchhHHH
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPISHQM 215 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 215 (475)
.-+++.|.||.|||..++ -++..+.. ..+..++++ ..+.-..|+..++-....++....+. |..+..++.
T Consensus 266 ~Liiiaarpg~GKT~~al-~~a~~~a~-------~~g~~v~~f-SlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~ 336 (505)
T PRK05636 266 QMIIVAARPGVGKSTLAL-DFMRSASI-------KHNKASVIF-SLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWE 336 (505)
T ss_pred ceEEEEeCCCCCHHHHHH-HHHHHHHH-------hCCCeEEEE-EeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHH
Confidence 337889999999996544 33333221 113445555 44555555555543332222221112 222222221
Q ss_pred H------HhhcCCcEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011901 216 R------ALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 216 ~------~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~ 258 (475)
+ .+ ....+.|- |...+...+.+-.. -..+++||||=.|.+.
T Consensus 337 ~~~~a~~~l-~~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 337 KLVQRLGKI-AQAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 1 11 22445553 23333333322111 1357899999999875
No 477
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=91.93 E-value=0.68 Score=48.29 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=36.8
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHH--HHHHHHHHHHhhCC
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE--LAKQVEKEFHESAP 198 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~--La~q~~~~~~~~~~ 198 (475)
.++++.|+||+|||..+...+.+.+ . .+..++++=|--. |...+...++..+.
T Consensus 177 ~H~lv~G~TGsGKT~l~~~l~~q~i-~--------~g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 177 GHTLVLGTTGVGKTRLAELLITQDI-R--------RGDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH-H--------cCCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 6899999999999976644444444 3 2556788878754 77777777666643
No 478
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.91 E-value=1.3 Score=46.25 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=24.3
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
+...+++||||+|.+... ....+...++..+....+|+.|
T Consensus 119 ~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred cCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 567889999999998543 2334444555544444444433
No 479
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.90 E-value=0.21 Score=51.56 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=27.5
Q ss_pred CcHHHHHhhhhHhcC--CcEEEEcCCCCchhHHHHHHHHHHH
Q 011901 122 LFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~l 161 (475)
+.+.|.+.+..+... ..++++||||||||.+. ..++..+
T Consensus 300 ~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 300 FEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 456777777766653 34789999999999654 4555554
No 480
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.90 E-value=0.67 Score=50.28 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=13.6
Q ss_pred EEEEcCCCCchhHHH
Q 011901 139 MIGRARTGTGKTLAF 153 (475)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (475)
+++.||||+|||..+
T Consensus 599 ~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 599 FLLVGPSGVGKTETA 613 (852)
T ss_pred EEEECCCCCCHHHHH
Confidence 799999999999855
No 481
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=91.90 E-value=0.2 Score=51.57 Aligned_cols=49 Identities=22% Similarity=0.102 Sum_probs=40.2
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.++++.||||||||..+++|.+-.. +..++++=|--++........++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-----------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-----------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-----------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 5799999999999999999987553 334888889889998888777665
No 482
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.86 E-value=0.67 Score=44.89 Aligned_cols=16 Identities=31% Similarity=0.262 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
..++.||+|+|||..+
T Consensus 38 ~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA 53 (355)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999654
No 483
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.85 E-value=0.28 Score=43.04 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=16.1
Q ss_pred EEEEcCCCCchhHHHHHHHHHHH
Q 011901 139 MIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~l 161 (475)
+++.||||||||... ..++..+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHh
Confidence 689999999999743 4444444
No 484
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.83 E-value=0.44 Score=45.66 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=39.4
Q ss_pred HHHHHHcCCCCCcHHHHHhhhhHhc-CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHH
Q 011901 111 VAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 111 ~~~l~~~~~~~l~~~Q~~~i~~i~~-~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
++.|.+.|. +++.+.+.+..+.. +.++++.|+||||||. ++-.++..+ ....+.+.+-.+.+|
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTT-ll~al~~~i---------~~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTT-LLSALLALV---------APDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHccC---------CCCCcEEEECCccee
Confidence 455556664 45677777766554 5789999999999996 333333332 123346666666565
No 485
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.81 E-value=0.16 Score=46.82 Aligned_cols=27 Identities=30% Similarity=0.193 Sum_probs=21.1
Q ss_pred HhhhhHhcCCcEEEEcCCCCchhHHHH
Q 011901 128 AVLEPAMQGRDMIGRARTGTGKTLAFG 154 (475)
Q Consensus 128 ~~i~~i~~~~~~li~~~tGsGKT~~~~ 154 (475)
+++..+..+.++++.|++|+|||..+.
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 344455678899999999999998653
No 486
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.63 E-value=0.87 Score=48.76 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.||||+|||..+
T Consensus 486 ~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 486 SFLFTGPTGVGKTELA 501 (731)
T ss_pred eEEEECCCCccHHHHH
Confidence 3799999999999755
No 487
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=91.61 E-value=0.55 Score=42.16 Aligned_cols=45 Identities=18% Similarity=0.049 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
|.-+.+.|++|+|||..++..+...+... . . .+....++++....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~-~-~-~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPG-E-L-GGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhccc-c-c-CCCcceEEEEecCC
Confidence 45689999999999976654444332110 0 0 01125677777643
No 488
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.52 E-value=0.23 Score=49.99 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=27.5
Q ss_pred CcHHHHHhhhhHhcCCc--EEEEcCCCCchhHHHHHHHHHHH
Q 011901 122 LFPIQKAVLEPAMQGRD--MIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~--~li~~~tGsGKT~~~~~~~l~~l 161 (475)
+.+.|.+.+..+..... +++.||||||||.+. ..++..+
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 46778888877665433 789999999999644 4445444
No 489
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=91.44 E-value=0.95 Score=47.02 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=26.1
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
+++-.++|+||+..-+|......+...+..+.+++.++..+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIa 521 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIA 521 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEe
Confidence 55667899999988777666666666665554444344433
No 490
>PRK09165 replicative DNA helicase; Provisional
Probab=91.29 E-value=1.4 Score=44.62 Aligned_cols=121 Identities=9% Similarity=0.041 Sum_probs=59.2
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhc------CCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEE-EcCc
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKH------GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGT 209 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~------~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~-~~~~ 209 (475)
.-+++.|.||.|||..++-.+.....+..... ....+..++++ ..+.-..|+..++.....++....+ .|..
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~f-SlEMs~~ql~~R~la~~s~v~~~~i~~~~l 296 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFF-SLEMSAEQLATRILSEQSEISSSKIRRGKI 296 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEE-eCcCCHHHHHHHHHHHhcCCCHHHHhcCCC
Confidence 34789999999999655433333322211000 00124456555 5566667777776554333332222 2222
Q ss_pred chhHHHHHh-----hcCCcEEEE-----ccHHHHHHHHhCCCCCCCccEEEEeccccccc
Q 011901 210 PISHQMRAL-----DYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 210 ~~~~~~~~~-----~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~ 259 (475)
...++.+.. -....+.|- |.+.+...+.+-.. -..+++||||=.|.+..
T Consensus 297 ~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 297 SEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIRG 355 (497)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhccC
Confidence 222211111 112345543 34455444433211 23578999999997753
No 491
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.29 E-value=0.43 Score=44.00 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=34.7
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 198 (475)
.|..+++.|++|||||.-.+-.+...+ + .|..+++++- .+...++.+.+..+..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~-~--------~ge~vlyvs~-~e~~~~l~~~~~~~g~ 75 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGA-R--------EGEPVLYVST-EESPEELLENARSFGW 75 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHH-h--------cCCcEEEEEe-cCCHHHHHHHHHHcCC
Confidence 456799999999999965544444333 2 2455666654 5666667777666443
No 492
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.24 E-value=0.32 Score=33.32 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCCchhHH
Q 011901 136 GRDMIGRARTGTGKTLA 152 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~ 152 (475)
|...++.|++|||||..
T Consensus 23 g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL 39 (62)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 34699999999999973
No 493
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=91.24 E-value=0.93 Score=46.88 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=38.9
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCH--HHHHHHHHHHHhhCC
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR--ELAKQVEKEFHESAP 198 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~--~La~q~~~~~~~~~~ 198 (475)
..+.++.|+||+|||..+...+.+.+.. +..++++=|.. ++...++...+..+.
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~---------g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR---------GDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 3579999999999998766655555532 56688888876 566666666666554
No 494
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.02 E-value=0.28 Score=47.15 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=18.2
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHh
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIK 163 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~ 163 (475)
.|+|+.||||||||+.+ --|+.+++
T Consensus 227 SNvLllGPtGsGKTlla--qTLAr~ld 251 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLA--QTLARVLD 251 (564)
T ss_pred ccEEEECCCCCchhHHH--HHHHHHhC
Confidence 57999999999999844 34444433
No 495
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=90.97 E-value=1.1 Score=46.02 Aligned_cols=90 Identities=17% Similarity=0.275 Sum_probs=72.7
Q ss_pred HHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-----cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCc-cccC
Q 011901 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-AARG 406 (475)
Q Consensus 333 ~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-~~~G 406 (475)
.+..++.....|.++..-+||.=-|++-+..+.+ ++.+.++.|++...+|+.+++...+|+++++|.|-+ +...
T Consensus 300 A~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~ 379 (677)
T COG1200 300 ALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK 379 (677)
T ss_pred HHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc
Confidence 4455566667899999999997666655555543 467899999999999999999999999999999964 5789
Q ss_pred CCCCCCCEEEEcCCCC
Q 011901 407 LDVPNVDLIIHYELPN 422 (475)
Q Consensus 407 idi~~~~~vi~~~~p~ 422 (475)
+++.+...||+-.-.+
T Consensus 380 V~F~~LgLVIiDEQHR 395 (677)
T COG1200 380 VEFHNLGLVIIDEQHR 395 (677)
T ss_pred eeecceeEEEEecccc
Confidence 9999999988755433
No 496
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=90.92 E-value=0.29 Score=50.44 Aligned_cols=62 Identities=26% Similarity=0.396 Sum_probs=49.6
Q ss_pred HHHhcCCCcEEEecCccccCCCCCCCCE--------EEEcCCCCChhHHHHhhhccCCCCC---CCeEEEEec
Q 011901 387 SAFRDGRFNILIATDVAARGLDVPNVDL--------IIHYELPNTSETFVHRTGRTGRAGK---KGSAILIYT 448 (475)
Q Consensus 387 ~~f~~g~~~vlvaT~~~~~Gidi~~~~~--------vi~~~~p~~~~~~~Q~~GR~gR~~~---~g~~~~~~~ 448 (475)
++|.+|+..|-|-+.+++.||.+..-+- =|-+..|||....+|..||++|.++ +-+++++..
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIse 923 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISE 923 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehh
Confidence 4689999999999999999998876443 3457899999999999999999764 445555544
No 497
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=90.80 E-value=0.34 Score=50.34 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=45.8
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHhhhh--HhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHH
Q 011901 107 SQDIVAALARRGISKLFPIQKAVLEP--AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (475)
Q Consensus 107 ~~~l~~~l~~~~~~~l~~~Q~~~i~~--i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 184 (475)
+.++.+.+++.+.. .++-...+|. -...+++++.|.||||||. .+..++..+.+ +|.+++|.=|+-+
T Consensus 156 ~~~l~k~lk~~~~~--s~i~I~gvPip~~~E~~H~li~GttGSGKS~-~i~~LL~~ir~--------RGdrAIIyD~~Ge 224 (732)
T PRK13700 156 PKDVARMLKKDGKD--SDIRIGDLPIIRDSEIQNFCLHGTVGAGKSE-VIRRLANYARQ--------RGDMVVIYDRSGE 224 (732)
T ss_pred HHHHHHHHHhcCCC--CCeeEccccCCcchhhcceEEeCCCCCCHHH-HHHHHHHHHHH--------cCCeEEEEeCCCc
Confidence 45666777776533 2333333333 2345799999999999996 44666666644 2556777777666
Q ss_pred HHHHHH
Q 011901 185 LAKQVE 190 (475)
Q Consensus 185 La~q~~ 190 (475)
.....+
T Consensus 225 Fv~~FY 230 (732)
T PRK13700 225 FVKSYY 230 (732)
T ss_pred hHHHhc
Confidence 665544
No 498
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=90.67 E-value=0.27 Score=39.21 Aligned_cols=43 Identities=23% Similarity=0.196 Sum_probs=24.2
Q ss_pred HhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHH
Q 011901 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (475)
+..+.-+++.|+.|+|||. +.-.++..+ +...-+-.||-.|++
T Consensus 12 l~~g~vi~L~GdLGaGKTt-f~r~l~~~l-----------g~~~~V~SPTF~l~~ 54 (123)
T PF02367_consen 12 LKPGDVILLSGDLGAGKTT-FVRGLARAL-----------GIDEEVTSPTFSLVN 54 (123)
T ss_dssp HSS-EEEEEEESTTSSHHH-HHHHHHHHT-----------T--S----TTTTSEE
T ss_pred CCCCCEEEEECCCCCCHHH-HHHHHHHHc-----------CCCCCcCCCCeEEEE
Confidence 3344558999999999994 545555544 222367788766653
No 499
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=90.61 E-value=4.8 Score=43.37 Aligned_cols=43 Identities=28% Similarity=0.437 Sum_probs=25.1
Q ss_pred ccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhC
Q 011901 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (475)
Q Consensus 228 T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~ 273 (475)
.|+.+...+..... .-.++++||+|.+.....+.....++..+
T Consensus 402 ~~G~~~~~l~~~~~---~~~villDEidk~~~~~~g~~~~aLlevl 444 (784)
T PRK10787 402 MPGKLIQKMAKVGV---KNPLFLLDEIDKMSSDMRGDPASALLEVL 444 (784)
T ss_pred CCcHHHHHHHhcCC---CCCEEEEEChhhcccccCCCHHHHHHHHh
Confidence 46666665554321 22479999999987653333344555544
No 500
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=90.57 E-value=1.6 Score=39.26 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=16.9
Q ss_pred HhcCC-cEEEEcCCCCchhHHHH
Q 011901 133 AMQGR-DMIGRARTGTGKTLAFG 154 (475)
Q Consensus 133 i~~~~-~~li~~~tGsGKT~~~~ 154 (475)
+..++ -+.++|+.|||||.+.-
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHH
Confidence 33445 47889999999998665
Done!