Query 011901
Match_columns 475
No_of_seqs 308 out of 2630
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 17:37:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 8.2E-60 2.8E-64 467.9 43.5 373 94-471 51-429 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 4.2E-57 1.5E-61 447.0 41.1 366 97-471 35-404 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 3.8E-57 1.3E-61 448.5 40.1 374 95-470 11-403 (417)
4 1s2m_A Putative ATP-dependent 100.0 3.9E-56 1.3E-60 438.7 41.3 366 96-471 18-386 (400)
5 1xti_A Probable ATP-dependent 100.0 5.3E-55 1.8E-59 429.3 42.1 365 99-471 8-379 (391)
6 3eiq_A Eukaryotic initiation f 100.0 1.4E-55 4.6E-60 436.9 36.6 367 95-470 36-407 (414)
7 1hv8_A Putative ATP-dependent 100.0 2E-54 7E-59 421.4 40.6 357 98-470 5-365 (367)
8 3sqw_A ATP-dependent RNA helic 100.0 5.2E-54 1.8E-58 441.9 38.1 363 106-470 28-418 (579)
9 3fht_A ATP-dependent RNA helic 100.0 1.9E-53 6.6E-58 421.2 40.4 364 96-471 22-401 (412)
10 3i5x_A ATP-dependent RNA helic 100.0 7.2E-54 2.5E-58 440.7 37.3 363 106-470 79-469 (563)
11 3pey_A ATP-dependent RNA helic 100.0 4E-53 1.4E-57 416.5 39.7 360 99-471 5-379 (395)
12 1fuu_A Yeast initiation factor 100.0 2.6E-55 9E-60 432.0 22.5 365 97-471 19-387 (394)
13 2z0m_A 337AA long hypothetical 100.0 1.7E-51 6E-56 396.0 37.3 334 106-464 1-336 (337)
14 3fmp_B ATP-dependent RNA helic 100.0 3.8E-54 1.3E-58 433.9 18.8 363 97-471 90-468 (479)
15 2v1x_A ATP-dependent DNA helic 100.0 4.4E-50 1.5E-54 409.1 36.1 339 101-458 23-382 (591)
16 1gm5_A RECG; helicase, replica 100.0 2.6E-52 8.8E-57 433.9 19.1 405 12-453 268-700 (780)
17 3fho_A ATP-dependent RNA helic 100.0 1.9E-51 6.6E-56 415.4 21.3 361 98-471 118-492 (508)
18 1oyw_A RECQ helicase, ATP-depe 100.0 2E-49 6.9E-54 400.5 34.3 338 100-460 3-353 (523)
19 3oiy_A Reverse gyrase helicase 100.0 8.3E-49 2.8E-53 387.8 30.6 326 108-463 8-376 (414)
20 2zj8_A DNA helicase, putative 100.0 3.1E-47 1.1E-51 401.1 33.4 351 100-470 2-405 (720)
21 2va8_A SSO2462, SKI2-type heli 100.0 1.6E-46 5.5E-51 395.8 35.3 355 98-469 7-426 (715)
22 2p6r_A Afuhel308 helicase; pro 100.0 1.9E-47 6.6E-52 401.5 27.1 352 100-469 2-405 (702)
23 4a2p_A RIG-I, retinoic acid in 100.0 3.4E-46 1.2E-50 383.6 29.4 331 118-454 4-512 (556)
24 3l9o_A ATP-dependent RNA helic 100.0 3.2E-46 1.1E-50 403.7 27.5 346 100-469 163-614 (1108)
25 2ykg_A Probable ATP-dependent 100.0 1.3E-46 4.4E-51 396.5 23.2 353 112-470 4-540 (696)
26 3tbk_A RIG-I helicase domain; 100.0 3.4E-46 1.1E-50 383.6 24.0 342 120-469 3-530 (555)
27 4a2q_A RIG-I, retinoic acid in 100.0 1.3E-44 4.6E-49 384.6 30.1 332 116-453 243-752 (797)
28 2xgj_A ATP-dependent RNA helic 100.0 8.7E-44 3E-48 381.5 35.5 325 120-469 85-516 (1010)
29 2eyq_A TRCF, transcription-rep 100.0 7E-44 2.4E-48 387.7 35.1 323 103-451 585-923 (1151)
30 4ddu_A Reverse gyrase; topoiso 100.0 4.2E-44 1.4E-48 387.0 30.7 334 110-474 67-518 (1104)
31 1wp9_A ATP-dependent RNA helic 100.0 4.6E-43 1.6E-47 354.4 34.8 320 121-453 9-478 (494)
32 4gl2_A Interferon-induced heli 100.0 2.9E-44 1E-48 378.7 20.8 325 120-449 6-518 (699)
33 4a2w_A RIG-I, retinoic acid in 100.0 1.7E-43 5.9E-48 379.7 26.8 332 116-453 243-752 (936)
34 1gku_B Reverse gyrase, TOP-RG; 100.0 3.8E-44 1.3E-48 387.8 21.4 332 111-473 47-480 (1054)
35 4a4z_A Antiviral helicase SKI2 100.0 5.5E-42 1.9E-46 367.6 33.2 311 119-448 37-490 (997)
36 1tf5_A Preprotein translocase 100.0 6E-42 2E-46 349.2 26.8 320 116-451 79-546 (844)
37 4f92_B U5 small nuclear ribonu 100.0 2E-40 6.9E-45 370.2 34.4 339 106-458 911-1316(1724)
38 2oca_A DAR protein, ATP-depend 100.0 8.1E-41 2.8E-45 339.5 26.3 312 119-448 111-453 (510)
39 2fwr_A DNA repair protein RAD2 100.0 7.3E-41 2.5E-45 336.5 21.6 295 120-450 92-454 (472)
40 2fsf_A Preprotein translocase 100.0 1E-40 3.5E-45 339.1 21.2 317 117-451 71-584 (853)
41 4f92_B U5 small nuclear ribonu 100.0 2.4E-40 8.3E-45 369.6 25.2 333 118-458 76-481 (1724)
42 1yks_A Genome polyprotein [con 100.0 1.7E-42 6E-47 342.6 6.3 277 132-462 4-314 (440)
43 2whx_A Serine protease/ntpase/ 100.0 2.5E-41 8.4E-46 345.6 13.4 313 104-462 155-493 (618)
44 2jlq_A Serine protease subunit 100.0 1E-39 3.4E-44 324.4 22.6 286 118-449 1-310 (451)
45 1nkt_A Preprotein translocase 100.0 6.1E-39 2.1E-43 326.4 27.3 332 117-464 108-638 (922)
46 2wv9_A Flavivirin protease NS2 100.0 6E-40 2.1E-44 337.3 17.0 297 121-462 215-548 (673)
47 2xau_A PRE-mRNA-splicing facto 100.0 6.2E-39 2.1E-43 336.0 22.3 334 98-452 71-445 (773)
48 3o8b_A HCV NS3 protease/helica 100.0 6.5E-40 2.2E-44 331.8 14.3 290 120-465 216-533 (666)
49 3h1t_A Type I site-specific re 100.0 4.7E-38 1.6E-42 324.3 23.0 305 121-439 178-545 (590)
50 2v6i_A RNA helicase; membrane, 100.0 5.9E-38 2E-42 309.6 22.6 269 135-448 1-288 (431)
51 3dmq_A RNA polymerase-associat 100.0 2.5E-37 8.5E-42 332.3 24.4 333 120-462 152-625 (968)
52 2z83_A Helicase/nucleoside tri 100.0 4.5E-38 1.5E-42 313.0 15.9 279 127-450 12-313 (459)
53 1z63_A Helicase of the SNF2/RA 100.0 5.4E-35 1.8E-39 295.9 28.5 311 120-451 36-454 (500)
54 3fe2_A Probable ATP-dependent 100.0 3.1E-35 1.1E-39 268.4 24.0 214 93-307 23-238 (242)
55 3iuy_A Probable ATP-dependent 100.0 2.9E-35 9.9E-40 266.3 22.9 212 94-305 14-227 (228)
56 3rc3_A ATP-dependent RNA helic 100.0 1.3E-34 4.5E-39 296.7 27.2 283 132-460 151-454 (677)
57 1vec_A ATP-dependent RNA helic 100.0 4.1E-34 1.4E-38 254.7 24.8 200 99-304 3-205 (206)
58 2gxq_A Heat resistant RNA depe 100.0 4.2E-34 1.4E-38 254.8 24.8 204 100-306 2-205 (207)
59 1q0u_A Bstdead; DEAD protein, 100.0 1.4E-34 4.8E-39 260.0 19.4 202 99-306 4-211 (219)
60 3ber_A Probable ATP-dependent 100.0 1E-33 3.5E-38 258.9 24.6 204 97-306 41-247 (249)
61 2oxc_A Probable ATP-dependent 100.0 5.9E-34 2E-38 257.9 22.5 206 93-305 18-227 (230)
62 3bor_A Human initiation factor 100.0 6.3E-34 2.1E-38 258.8 21.5 206 95-306 26-234 (237)
63 2pl3_A Probable ATP-dependent 100.0 3E-33 1E-37 254.4 25.7 209 95-306 21-232 (236)
64 3ly5_A ATP-dependent RNA helic 100.0 3.5E-33 1.2E-37 257.4 23.8 204 97-302 50-258 (262)
65 1qde_A EIF4A, translation init 100.0 3.4E-33 1.1E-37 252.1 22.9 204 96-306 11-216 (224)
66 3fmo_B ATP-dependent RNA helic 100.0 2E-33 6.9E-38 263.7 21.2 201 97-306 90-297 (300)
67 1wrb_A DJVLGB; RNA helicase, D 100.0 2E-33 6.9E-38 258.3 20.1 210 97-306 21-239 (253)
68 1t6n_A Probable ATP-dependent 100.0 1.1E-32 3.8E-37 248.0 21.9 201 99-305 14-219 (220)
69 1z3i_X Similar to RAD54-like; 100.0 2.4E-31 8E-36 275.2 32.4 323 120-450 54-528 (644)
70 3mwy_W Chromo domain-containin 100.0 5.7E-32 2E-36 286.7 28.0 332 120-463 235-699 (800)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 8.6E-32 2.9E-36 287.0 26.2 312 121-448 271-707 (1038)
72 3jux_A Protein translocase sub 100.0 1.3E-30 4.4E-35 259.8 32.3 330 117-465 72-609 (822)
73 3dkp_A Probable ATP-dependent 100.0 1.2E-31 4E-36 245.4 20.4 209 94-307 20-241 (245)
74 1c4o_A DNA nucleotide excision 100.0 5.6E-28 1.9E-32 249.6 29.8 172 276-457 380-557 (664)
75 2ipc_A Preprotein translocase 100.0 4.4E-27 1.5E-31 238.7 29.3 128 117-258 76-215 (997)
76 2d7d_A Uvrabc system protein B 100.0 3.2E-27 1.1E-31 243.8 28.3 170 275-454 385-560 (661)
77 2hjv_A ATP-dependent RNA helic 100.0 5.2E-27 1.8E-31 199.9 20.0 154 316-470 8-162 (163)
78 1t5i_A C_terminal domain of A 99.9 8.8E-27 3E-31 200.0 17.5 155 316-471 4-160 (172)
79 1fuk_A Eukaryotic initiation f 99.9 1.2E-26 4.2E-31 198.1 17.2 153 318-471 4-158 (165)
80 2rb4_A ATP-dependent RNA helic 99.9 1.8E-26 6.1E-31 199.1 18.4 158 315-473 5-170 (175)
81 3eaq_A Heat resistant RNA depe 99.9 4.3E-26 1.5E-30 202.6 19.5 151 320-471 8-159 (212)
82 2jgn_A DBX, DDX3, ATP-dependen 99.9 9.6E-27 3.3E-31 202.1 14.2 157 314-470 16-173 (185)
83 2p6n_A ATP-dependent RNA helic 99.9 2.5E-26 8.7E-31 200.2 15.2 172 295-470 9-182 (191)
84 3i32_A Heat resistant RNA depe 99.9 2E-25 6.8E-30 207.5 18.9 153 318-471 3-156 (300)
85 3b6e_A Interferon-induced heli 99.9 2.5E-24 8.6E-29 192.7 12.9 166 117-285 29-216 (216)
86 2yjt_D ATP-dependent RNA helic 99.8 4.5E-26 1.6E-30 195.5 0.0 141 328-469 15-156 (170)
87 2vl7_A XPD; helicase, unknown 99.9 1.6E-22 5.5E-27 204.8 23.7 300 118-449 5-520 (540)
88 3llm_A ATP-dependent RNA helic 99.9 1.3E-22 4.3E-27 183.7 12.8 183 107-302 47-232 (235)
89 3crv_A XPD/RAD3 related DNA he 99.9 3.7E-20 1.3E-24 188.2 29.3 127 121-259 3-187 (551)
90 1rif_A DAR protein, DNA helica 99.9 3.5E-22 1.2E-26 186.2 12.9 153 120-290 112-266 (282)
91 2fz4_A DNA repair protein RAD2 99.8 1.7E-19 5.7E-24 162.9 15.7 139 120-289 92-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 7.7E-18 2.6E-22 172.4 22.7 104 344-450 448-584 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 4.2E-18 1.4E-22 156.3 12.2 125 326-450 93-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 8E-09 2.7E-13 105.7 10.7 144 123-285 151-298 (608)
95 4b3f_X DNA-binding protein smu 98.5 2.6E-07 8.9E-12 95.6 9.7 68 121-197 189-257 (646)
96 3upu_A ATP-dependent DNA helic 98.5 8.6E-06 3E-10 80.5 20.1 136 116-283 20-162 (459)
97 3e1s_A Exodeoxyribonuclease V, 98.5 1.1E-06 3.9E-11 88.8 12.9 127 120-284 188-314 (574)
98 2gk6_A Regulator of nonsense t 98.3 8.6E-06 3E-10 83.7 16.4 70 119-196 178-247 (624)
99 2xzl_A ATP-dependent helicase 98.3 1.2E-05 4.1E-10 84.5 16.4 69 120-196 359-427 (802)
100 2wjy_A Regulator of nonsense t 98.2 1.9E-05 6.4E-10 83.0 15.9 69 120-196 355-423 (800)
101 3lfu_A DNA helicase II; SF1 he 98.0 0.00027 9.1E-09 73.2 19.6 71 120-197 8-78 (647)
102 2o0j_A Terminase, DNA packagin 97.8 8.1E-05 2.8E-09 70.9 9.8 120 120-259 162-287 (385)
103 3hgt_A HDA1 complex subunit 3; 97.6 0.0005 1.7E-08 63.1 11.7 123 326-453 106-240 (328)
104 3cpe_A Terminase, DNA packagin 97.6 0.00027 9.1E-09 72.1 10.3 146 120-288 162-315 (592)
105 3ec2_A DNA replication protein 97.2 0.0021 7E-08 54.4 10.2 19 135-153 37-55 (180)
106 2orw_A Thymidine kinase; TMTK, 97.1 0.0013 4.3E-08 56.0 7.7 39 136-183 3-41 (184)
107 3vkw_A Replicase large subunit 97.0 0.0035 1.2E-07 60.4 10.3 106 139-285 164-269 (446)
108 3te6_A Regulatory protein SIR3 96.9 0.0039 1.3E-07 57.7 9.8 26 136-162 45-70 (318)
109 2kjq_A DNAA-related protein; s 96.8 0.00068 2.3E-08 55.5 3.6 19 135-153 35-53 (149)
110 1xx6_A Thymidine kinase; NESG, 96.8 0.0015 5.1E-08 55.8 5.9 39 136-183 8-46 (191)
111 2chg_A Replication factor C sm 96.8 0.015 5E-07 50.6 12.6 40 244-284 101-140 (226)
112 1uaa_A REP helicase, protein ( 96.8 0.0039 1.3E-07 64.6 9.9 71 121-198 2-72 (673)
113 1l8q_A Chromosomal replication 96.8 0.0062 2.1E-07 56.9 10.2 18 136-153 37-54 (324)
114 2b8t_A Thymidine kinase; deoxy 96.8 0.0035 1.2E-07 54.8 7.8 91 136-258 12-102 (223)
115 1a5t_A Delta prime, HOLB; zinc 96.6 0.0023 7.7E-08 60.2 6.0 33 122-154 3-42 (334)
116 2j9r_A Thymidine kinase; TK1, 96.6 0.0035 1.2E-07 54.0 6.6 38 138-184 30-67 (214)
117 2z4s_A Chromosomal replication 96.6 0.011 3.7E-07 57.8 10.7 41 245-285 194-236 (440)
118 4b4t_J 26S protease regulatory 96.6 0.0046 1.6E-07 58.8 7.5 55 96-153 142-199 (405)
119 2v1u_A Cell division control p 96.4 0.023 7.7E-07 54.3 11.4 18 136-153 44-61 (387)
120 4b4t_H 26S protease regulatory 96.3 0.0082 2.8E-07 58.0 7.8 55 96-153 203-260 (467)
121 3bos_A Putative DNA replicatio 96.3 0.0042 1.4E-07 55.0 5.4 19 135-153 51-69 (242)
122 4b4t_M 26S protease regulatory 96.3 0.0033 1.1E-07 60.7 4.9 56 95-153 174-232 (434)
123 3h4m_A Proteasome-activating n 96.3 0.014 4.8E-07 53.3 9.1 55 97-153 12-68 (285)
124 1pjr_A PCRA; DNA repair, DNA r 96.2 0.0099 3.4E-07 62.1 8.3 71 120-197 10-80 (724)
125 2orv_A Thymidine kinase; TP4A 96.2 0.017 5.9E-07 50.3 8.3 39 136-183 19-57 (234)
126 2zpa_A Uncharacterized protein 96.2 0.0098 3.3E-07 60.4 7.8 113 121-287 175-289 (671)
127 1d2n_A N-ethylmaleimide-sensit 96.1 0.03 1E-06 50.7 10.2 17 137-153 65-81 (272)
128 1w4r_A Thymidine kinase; type 96.0 0.0053 1.8E-07 52.0 4.3 38 136-182 20-57 (195)
129 4b4t_L 26S protease subunit RP 96.0 0.0068 2.3E-07 58.6 5.6 55 96-153 175-232 (437)
130 2w58_A DNAI, primosome compone 96.0 0.035 1.2E-06 47.6 9.8 17 137-153 55-71 (202)
131 3u4q_A ATP-dependent helicase/ 96.0 0.0097 3.3E-07 66.0 7.5 126 120-255 9-137 (1232)
132 3e2i_A Thymidine kinase; Zn-bi 96.0 0.014 4.7E-07 50.3 6.8 40 136-184 28-67 (219)
133 4b4t_I 26S protease regulatory 95.9 0.011 3.7E-07 56.6 6.4 56 95-153 175-233 (437)
134 3kl4_A SRP54, signal recogniti 95.9 0.065 2.2E-06 51.7 11.8 55 243-297 177-234 (433)
135 4b4t_K 26S protease regulatory 95.9 0.011 3.8E-07 57.0 6.3 56 95-153 165-223 (428)
136 1g5t_A COB(I)alamin adenosyltr 95.9 0.035 1.2E-06 47.1 8.6 137 137-294 29-171 (196)
137 2p65_A Hypothetical protein PF 95.8 0.044 1.5E-06 45.9 9.5 18 136-153 43-60 (187)
138 1iqp_A RFCS; clamp loader, ext 95.8 0.028 9.7E-07 52.2 9.0 39 244-283 109-147 (327)
139 1jbk_A CLPB protein; beta barr 95.7 0.19 6.5E-06 42.1 12.9 17 137-153 44-60 (195)
140 3syl_A Protein CBBX; photosynt 95.6 0.027 9.1E-07 52.0 7.9 17 137-153 68-84 (309)
141 3eie_A Vacuolar protein sortin 95.6 0.044 1.5E-06 51.0 9.2 52 96-153 12-68 (322)
142 2qgz_A Helicase loader, putati 95.6 0.044 1.5E-06 50.6 9.0 19 136-154 152-170 (308)
143 2qby_B CDC6 homolog 3, cell di 95.4 0.041 1.4E-06 52.5 8.6 17 137-153 46-62 (384)
144 1gm5_A RECG; helicase, replica 95.3 0.058 2E-06 56.4 9.8 98 325-422 397-501 (780)
145 1fnn_A CDC6P, cell division co 95.2 0.033 1.1E-06 53.2 7.2 16 138-153 46-61 (389)
146 3pfi_A Holliday junction ATP-d 95.2 0.055 1.9E-06 50.6 8.6 17 137-153 56-72 (338)
147 3u61_B DNA polymerase accessor 95.2 0.035 1.2E-06 51.7 7.1 40 244-283 104-143 (324)
148 3vfd_A Spastin; ATPase, microt 95.2 0.073 2.5E-06 51.0 9.3 18 136-153 148-165 (389)
149 1njg_A DNA polymerase III subu 95.1 0.12 4E-06 45.3 10.1 16 138-153 47-62 (250)
150 3pvs_A Replication-associated 95.1 0.046 1.6E-06 53.3 7.8 17 137-153 51-67 (447)
151 2qby_A CDC6 homolog 1, cell di 95.1 0.075 2.6E-06 50.5 9.3 18 136-153 45-62 (386)
152 1sxj_D Activator 1 41 kDa subu 95.1 0.11 3.6E-06 48.9 10.1 40 244-284 132-171 (353)
153 3t15_A Ribulose bisphosphate c 94.9 0.033 1.1E-06 51.1 5.7 17 137-153 37-53 (293)
154 1sxj_E Activator 1 40 kDa subu 94.7 0.47 1.6E-05 44.4 13.6 43 244-287 133-175 (354)
155 1sxj_A Activator 1 95 kDa subu 94.6 0.068 2.3E-06 53.3 7.9 42 244-287 147-190 (516)
156 2qz4_A Paraplegin; AAA+, SPG7, 94.6 0.18 6E-06 45.0 9.9 18 136-153 39-56 (262)
157 3hjh_A Transcription-repair-co 94.4 0.19 6.6E-06 49.2 10.2 54 135-200 13-66 (483)
158 1xwi_A SKD1 protein; VPS4B, AA 94.4 0.099 3.4E-06 48.6 7.8 54 97-153 7-62 (322)
159 1sxj_C Activator 1 40 kDa subu 94.3 0.18 6E-06 47.2 9.6 39 244-283 109-147 (340)
160 1sxj_B Activator 1 37 kDa subu 94.3 0.18 6.2E-06 46.5 9.6 38 245-283 107-144 (323)
161 2chq_A Replication factor C sm 94.3 0.11 3.6E-06 48.0 7.9 16 138-153 40-55 (319)
162 3dm5_A SRP54, signal recogniti 94.1 0.24 8.2E-06 47.8 10.1 53 245-297 182-235 (443)
163 2qp9_X Vacuolar protein sortin 94.1 0.12 4.1E-06 48.7 7.9 35 421-464 318-352 (355)
164 2w0m_A SSO2452; RECA, SSPF, un 94.0 0.25 8.6E-06 43.0 9.5 19 135-153 22-40 (235)
165 1hqc_A RUVB; extended AAA-ATPa 93.9 0.15 5.3E-06 47.1 8.2 17 137-153 39-55 (324)
166 3cf2_A TER ATPase, transitiona 93.9 0.11 3.7E-06 54.2 7.6 58 95-153 470-528 (806)
167 2gno_A DNA polymerase III, gam 93.9 0.17 5.9E-06 46.5 8.3 40 243-283 80-119 (305)
168 3uk6_A RUVB-like 2; hexameric 93.9 0.49 1.7E-05 44.6 11.8 18 136-153 70-87 (368)
169 2q6t_A DNAB replication FORK h 93.8 0.17 5.9E-06 49.3 8.5 114 136-260 200-325 (444)
170 3oiy_A Reverse gyrase helicase 93.6 0.2 6.8E-06 48.3 8.6 83 338-420 58-148 (414)
171 2r6a_A DNAB helicase, replicat 93.4 0.25 8.7E-06 48.3 8.9 115 135-260 202-328 (454)
172 2ce7_A Cell division protein F 93.3 0.13 4.3E-06 50.5 6.5 52 97-153 11-66 (476)
173 4a1f_A DNAB helicase, replicat 93.3 0.056 1.9E-06 50.4 3.8 50 135-194 45-94 (338)
174 1jr3_A DNA polymerase III subu 92.9 0.13 4.4E-06 48.7 6.0 39 244-283 118-156 (373)
175 3n70_A Transport activator; si 92.8 0.091 3.1E-06 42.3 4.0 20 134-153 22-41 (145)
176 1w5s_A Origin recognition comp 92.6 0.15 5.2E-06 49.0 6.1 17 137-153 51-69 (412)
177 3co5_A Putative two-component 92.6 0.09 3.1E-06 42.2 3.7 20 134-153 25-44 (143)
178 3hu3_A Transitional endoplasmi 92.5 0.23 7.8E-06 48.9 7.2 43 246-288 298-350 (489)
179 2fna_A Conserved hypothetical 92.3 4.4 0.00015 37.4 15.8 52 229-285 124-178 (357)
180 3pxi_A Negative regulator of g 92.3 0.35 1.2E-05 50.7 8.7 16 138-153 523-538 (758)
181 2p6n_A ATP-dependent RNA helic 92.3 1.8 6.3E-05 36.4 11.8 73 173-253 54-130 (191)
182 1nlf_A Regulatory protein REPA 91.9 0.56 1.9E-05 42.4 8.6 25 131-155 25-49 (279)
183 3cmu_A Protein RECA, recombina 91.8 0.22 7.7E-06 56.9 6.9 47 130-185 1415-1467(2050)
184 4ddu_A Reverse gyrase; topoiso 91.7 0.35 1.2E-05 52.8 8.1 83 338-420 115-205 (1104)
185 2l8b_A Protein TRAI, DNA helic 91.7 0.37 1.3E-05 40.0 6.3 121 122-285 35-158 (189)
186 3m6a_A ATP-dependent protease 91.6 0.25 8.6E-06 49.5 6.4 19 135-153 107-125 (543)
187 1n0w_A DNA repair protein RAD5 91.5 0.7 2.4E-05 40.4 8.7 21 135-155 23-43 (243)
188 3bh0_A DNAB-like replicative h 91.5 0.6 2.1E-05 43.0 8.5 52 135-196 67-118 (315)
189 2hjv_A ATP-dependent RNA helic 90.7 1.1 3.9E-05 36.5 8.6 74 173-254 35-112 (163)
190 2zr9_A Protein RECA, recombina 90.7 0.95 3.2E-05 42.4 9.0 39 135-182 60-98 (349)
191 3bgw_A DNAB-like replicative h 90.6 0.23 8E-06 48.3 4.9 49 136-194 197-245 (444)
192 2eyq_A TRCF, transcription-rep 90.6 0.81 2.8E-05 50.2 9.6 101 321-421 628-735 (1151)
193 3cf2_A TER ATPase, transitiona 90.3 1.3 4.3E-05 46.3 10.3 41 245-285 297-347 (806)
194 2ehv_A Hypothetical protein PH 90.0 0.26 8.8E-06 43.6 4.3 22 133-154 27-48 (251)
195 2rb4_A ATP-dependent RNA helic 89.9 1.9 6.7E-05 35.5 9.5 73 173-253 34-110 (175)
196 1fuk_A Eukaryotic initiation f 89.7 1.4 4.8E-05 36.0 8.4 74 173-254 30-107 (165)
197 3io5_A Recombination and repai 89.6 0.79 2.7E-05 42.0 7.1 43 138-187 30-72 (333)
198 1qvr_A CLPB protein; coiled co 89.6 0.52 1.8E-05 50.1 6.9 17 137-153 192-208 (854)
199 3hws_A ATP-dependent CLP prote 89.4 0.48 1.6E-05 44.7 5.9 19 135-153 50-68 (363)
200 2z43_A DNA repair and recombin 89.3 1.2 4.3E-05 41.1 8.6 58 136-196 107-165 (324)
201 3cf0_A Transitional endoplasmi 89.2 0.13 4.6E-06 47.1 1.9 57 96-153 9-66 (301)
202 3eaq_A Heat resistant RNA depe 89.0 1.5 5E-05 37.7 8.3 71 173-251 31-105 (212)
203 2dr3_A UPF0273 protein PH0284; 88.8 0.48 1.6E-05 41.7 5.2 52 135-196 22-73 (247)
204 1e9r_A Conjugal transfer prote 88.4 0.48 1.6E-05 46.0 5.2 44 135-187 52-95 (437)
205 2zts_A Putative uncharacterize 88.2 0.41 1.4E-05 42.2 4.3 52 136-196 30-81 (251)
206 1p9r_A General secretion pathw 87.9 1 3.5E-05 43.3 7.0 29 124-152 153-183 (418)
207 1r6b_X CLPA protein; AAA+, N-t 87.8 1.6 5.6E-05 45.6 9.3 18 136-153 207-224 (758)
208 1ofh_A ATP-dependent HSL prote 87.6 0.92 3.2E-05 41.3 6.5 18 136-153 50-67 (310)
209 3b85_A Phosphate starvation-in 87.6 0.63 2.2E-05 39.9 5.0 33 120-152 6-38 (208)
210 1t6n_A Probable ATP-dependent 87.4 3.1 0.00011 35.6 9.5 75 344-421 82-168 (220)
211 3i5x_A ATP-dependent RNA helic 87.2 6.5 0.00022 39.2 13.0 78 172-255 338-420 (563)
212 1tue_A Replication protein E1; 87.1 0.88 3E-05 38.7 5.4 50 108-160 28-81 (212)
213 2jgn_A DBX, DDX3, ATP-dependen 87.1 1.5 5.1E-05 36.7 7.0 72 172-251 45-120 (185)
214 1t5i_A C_terminal domain of A 87.0 2.2 7.7E-05 35.1 8.0 75 173-255 31-109 (172)
215 3nbx_X ATPase RAVA; AAA+ ATPas 86.9 0.74 2.5E-05 45.4 5.5 36 118-153 23-58 (500)
216 2x8a_A Nuclear valosin-contain 86.6 0.17 5.7E-06 45.8 0.7 54 97-153 5-61 (274)
217 1ls1_A Signal recognition part 86.5 4.6 0.00016 36.6 10.4 19 135-153 97-115 (295)
218 3fe2_A Probable ATP-dependent 85.7 3.2 0.00011 36.2 8.8 75 343-421 101-186 (242)
219 2bjv_A PSP operon transcriptio 85.6 0.52 1.8E-05 42.1 3.5 19 135-153 28-46 (265)
220 2gxq_A Heat resistant RNA depe 85.3 5.9 0.0002 33.3 10.1 75 343-421 71-154 (207)
221 2i4i_A ATP-dependent RNA helic 85.0 4.7 0.00016 38.3 10.3 72 172-251 275-350 (417)
222 1u0j_A DNA replication protein 84.7 1.9 6.5E-05 38.4 6.6 44 108-154 73-122 (267)
223 3u4q_B ATP-dependent helicase/ 84.7 2.3 7.8E-05 46.9 8.7 52 139-197 4-55 (1166)
224 2r44_A Uncharacterized protein 84.6 0.43 1.5E-05 44.3 2.6 23 131-153 41-63 (331)
225 2i1q_A DNA repair and recombin 84.5 1.6 5.5E-05 40.2 6.4 21 136-156 98-118 (322)
226 2oap_1 GSPE-2, type II secreti 84.4 1.2 4.3E-05 43.9 5.8 39 112-152 237-276 (511)
227 3nwn_A Kinesin-like protein KI 84.2 0.68 2.3E-05 43.4 3.6 25 129-153 96-122 (359)
228 1um8_A ATP-dependent CLP prote 84.1 2 6.9E-05 40.5 7.1 18 136-153 72-89 (376)
229 3sqw_A ATP-dependent RNA helic 84.1 9.3 0.00032 38.3 12.4 78 172-255 287-369 (579)
230 2pl3_A Probable ATP-dependent 83.7 5.3 0.00018 34.5 9.2 74 343-421 96-181 (236)
231 3hr8_A Protein RECA; alpha and 83.6 2.2 7.6E-05 39.9 6.9 41 136-185 61-101 (356)
232 3vaa_A Shikimate kinase, SK; s 83.4 0.55 1.9E-05 39.9 2.5 19 135-153 24-42 (199)
233 3ber_A Probable ATP-dependent 83.3 5 0.00017 35.2 9.0 74 344-421 111-196 (249)
234 1bg2_A Kinesin; motor protein, 83.3 0.83 2.8E-05 42.2 3.8 25 129-153 69-95 (325)
235 3i32_A Heat resistant RNA depe 82.9 3.2 0.00011 37.8 7.6 74 173-254 28-105 (300)
236 4ag6_A VIRB4 ATPase, type IV s 82.9 1.3 4.3E-05 42.3 5.1 42 135-185 34-75 (392)
237 3dc4_A Kinesin-like protein NO 82.5 0.8 2.8E-05 42.6 3.4 25 129-153 86-112 (344)
238 1qhx_A CPT, protein (chloramph 82.5 0.6 2.1E-05 38.6 2.3 18 136-153 3-20 (178)
239 3iij_A Coilin-interacting nucl 82.5 0.58 2E-05 38.9 2.3 20 134-153 9-28 (180)
240 2r8r_A Sensor protein; KDPD, P 82.4 1.5 5.1E-05 38.0 4.8 23 138-160 8-30 (228)
241 1f9v_A Kinesin-like protein KA 82.3 0.93 3.2E-05 42.2 3.8 26 129-154 76-103 (347)
242 3trf_A Shikimate kinase, SK; a 82.3 0.63 2.2E-05 38.8 2.4 18 136-153 5-22 (185)
243 1ojl_A Transcriptional regulat 82.2 0.86 3E-05 41.7 3.5 19 135-153 24-42 (304)
244 1v8k_A Kinesin-like protein KI 82.2 0.88 3E-05 43.3 3.6 26 129-154 146-173 (410)
245 3t0q_A AGR253WP; kinesin, alph 82.2 0.91 3.1E-05 42.4 3.6 25 129-153 77-103 (349)
246 2vvg_A Kinesin-2; motor protei 82.2 0.96 3.3E-05 42.2 3.8 25 129-153 81-107 (350)
247 3b9p_A CG5977-PA, isoform A; A 82.2 0.6 2E-05 42.5 2.4 54 97-153 16-71 (297)
248 2eyu_A Twitching motility prot 82.0 0.69 2.4E-05 41.3 2.7 20 133-152 22-41 (261)
249 2h58_A Kinesin-like protein KI 82.0 0.99 3.4E-05 41.7 3.8 26 128-153 71-98 (330)
250 2y65_A Kinesin, kinesin heavy 82.0 0.98 3.4E-05 42.4 3.8 25 129-153 76-102 (365)
251 3b6u_A Kinesin-like protein KI 81.9 0.94 3.2E-05 42.6 3.6 25 129-153 93-119 (372)
252 4etp_A Kinesin-like protein KA 81.8 1 3.5E-05 42.9 3.9 26 129-154 132-159 (403)
253 1goj_A Kinesin, kinesin heavy 81.8 0.97 3.3E-05 42.3 3.7 24 130-153 73-98 (355)
254 1t5c_A CENP-E protein, centrom 81.7 0.97 3.3E-05 42.1 3.6 25 129-153 69-95 (349)
255 4a14_A Kinesin, kinesin-like p 81.7 1 3.5E-05 42.0 3.8 25 129-153 75-101 (344)
256 3lw7_A Adenylate kinase relate 81.7 0.64 2.2E-05 38.1 2.3 16 138-153 3-18 (179)
257 1sky_E F1-ATPase, F1-ATP synth 81.6 8 0.00028 37.4 10.1 25 130-154 145-169 (473)
258 3gbj_A KIF13B protein; kinesin 81.6 0.98 3.4E-05 42.2 3.6 25 129-153 84-110 (354)
259 3lre_A Kinesin-like protein KI 81.5 0.99 3.4E-05 42.2 3.6 25 129-153 97-123 (355)
260 2zfi_A Kinesin-like protein KI 81.5 1 3.5E-05 42.3 3.8 25 129-153 81-107 (366)
261 2nr8_A Kinesin-like protein KI 81.4 1 3.5E-05 42.1 3.6 25 129-153 95-121 (358)
262 2d7d_A Uvrabc system protein B 81.3 9.4 0.00032 39.0 11.2 77 173-257 445-525 (661)
263 1kgd_A CASK, peripheral plasma 81.3 0.91 3.1E-05 37.8 3.0 19 135-153 4-22 (180)
264 2qmh_A HPR kinase/phosphorylas 81.2 0.83 2.8E-05 38.7 2.7 18 136-153 34-51 (205)
265 1lv7_A FTSH; alpha/beta domain 81.2 0.66 2.3E-05 41.2 2.2 17 137-153 46-62 (257)
266 1x88_A Kinesin-like protein KI 81.1 0.96 3.3E-05 42.4 3.4 25 129-153 80-106 (359)
267 2gza_A Type IV secretion syste 81.1 1 3.5E-05 42.4 3.6 20 132-151 171-190 (361)
268 1y63_A LMAJ004144AAA protein; 81.1 0.76 2.6E-05 38.4 2.5 19 135-153 9-27 (184)
269 1ixz_A ATP-dependent metallopr 81.0 0.91 3.1E-05 40.2 3.1 55 96-153 10-66 (254)
270 1zp6_A Hypothetical protein AT 80.9 0.54 1.9E-05 39.5 1.5 20 134-153 7-26 (191)
271 2r2a_A Uncharacterized protein 80.6 1.1 3.7E-05 38.1 3.3 17 138-154 7-23 (199)
272 3jvv_A Twitching mobility prot 80.6 1 3.5E-05 42.2 3.4 18 135-152 122-139 (356)
273 3a8t_A Adenylate isopentenyltr 80.5 0.92 3.2E-05 42.0 3.0 17 137-153 41-57 (339)
274 2j41_A Guanylate kinase; GMP, 80.5 0.77 2.6E-05 39.0 2.4 20 134-153 4-23 (207)
275 1kag_A SKI, shikimate kinase I 80.4 0.88 3E-05 37.4 2.6 18 136-153 4-21 (173)
276 2heh_A KIF2C protein; kinesin, 80.4 1.1 3.8E-05 42.3 3.5 26 129-154 126-153 (387)
277 1vec_A ATP-dependent RNA helic 80.4 4.1 0.00014 34.3 7.1 73 344-420 71-155 (206)
278 4f4c_A Multidrug resistance pr 80.3 2.5 8.4E-05 47.2 6.8 41 243-283 1233-1273(1321)
279 2wbe_C Bipolar kinesin KRP-130 80.3 1.1 3.6E-05 42.3 3.4 25 129-153 92-118 (373)
280 2qor_A Guanylate kinase; phosp 80.1 0.79 2.7E-05 39.1 2.3 20 134-153 10-29 (204)
281 1u94_A RECA protein, recombina 80.1 1.6 5.6E-05 40.8 4.6 39 135-182 62-100 (356)
282 1kht_A Adenylate kinase; phosp 79.9 0.84 2.9E-05 38.2 2.4 18 136-153 3-20 (192)
283 3bfn_A Kinesin-like protein KI 79.9 1.1 3.7E-05 42.4 3.3 22 132-153 93-116 (388)
284 3u06_A Protein claret segregat 79.7 1.1 3.9E-05 42.7 3.4 26 128-153 129-156 (412)
285 2owm_A Nckin3-434, related to 79.6 1.3 4.3E-05 42.8 3.8 25 129-153 128-154 (443)
286 3cob_A Kinesin heavy chain-lik 79.6 1 3.5E-05 42.3 3.0 25 129-153 71-97 (369)
287 2zan_A Vacuolar protein sortin 79.5 0.95 3.3E-05 44.0 2.9 55 96-153 128-184 (444)
288 1hv8_A Putative ATP-dependent 79.2 6.7 0.00023 36.3 8.8 74 172-253 237-314 (367)
289 1oyw_A RECQ helicase, ATP-depe 79.1 5.4 0.00018 39.5 8.3 77 343-419 64-147 (523)
290 3fht_A ATP-dependent RNA helic 79.0 7.3 0.00025 36.8 9.1 73 173-253 266-342 (412)
291 3tau_A Guanylate kinase, GMP k 79.0 1.2 4.2E-05 38.0 3.2 19 135-153 7-25 (208)
292 2pt7_A CAG-ALFA; ATPase, prote 79.0 0.95 3.2E-05 42.0 2.6 19 133-151 168-186 (330)
293 1lvg_A Guanylate kinase, GMP k 78.9 1.2 4.3E-05 37.6 3.2 19 135-153 3-21 (198)
294 2ze6_A Isopentenyl transferase 78.9 1.1 3.8E-05 39.7 2.9 16 138-153 3-18 (253)
295 2cvh_A DNA repair and recombin 78.9 2.1 7.1E-05 36.6 4.7 21 135-155 19-39 (220)
296 1ly1_A Polynucleotide kinase; 78.8 0.91 3.1E-05 37.5 2.3 16 138-153 4-19 (181)
297 2rep_A Kinesin-like protein KI 78.8 1.4 4.7E-05 41.5 3.6 25 129-153 107-133 (376)
298 1rj9_A FTSY, signal recognitio 78.8 2.4 8.3E-05 38.7 5.2 26 136-163 102-127 (304)
299 3exa_A TRNA delta(2)-isopenten 78.7 1.1 3.7E-05 41.0 2.8 16 138-153 5-20 (322)
300 2v1x_A ATP-dependent DNA helic 78.7 5.4 0.00019 40.2 8.3 59 343-401 83-144 (591)
301 3foz_A TRNA delta(2)-isopenten 78.7 1.2 3.9E-05 40.7 2.9 16 138-153 12-27 (316)
302 3kb2_A SPBC2 prophage-derived 78.5 0.95 3.2E-05 37.1 2.2 16 138-153 3-18 (173)
303 1wp9_A ATP-dependent RNA helic 78.5 19 0.00064 34.6 12.1 134 326-464 32-182 (494)
304 3pey_A ATP-dependent RNA helic 78.4 8.7 0.0003 35.9 9.4 77 172-256 242-322 (395)
305 3cm0_A Adenylate kinase; ATP-b 78.2 0.77 2.6E-05 38.3 1.6 18 136-153 4-21 (186)
306 1wrb_A DJVLGB; RNA helicase, D 78.2 13 0.00045 32.3 9.9 74 344-421 100-184 (253)
307 2ewv_A Twitching motility prot 78.1 1.3 4.3E-05 41.9 3.2 19 134-152 134-152 (372)
308 3bor_A Human initiation factor 78.1 3.6 0.00012 35.8 6.0 75 343-420 97-182 (237)
309 1cr0_A DNA primase/helicase; R 78.0 2.2 7.6E-05 38.6 4.8 19 135-153 34-52 (296)
310 3tr0_A Guanylate kinase, GMP k 77.6 1.3 4.6E-05 37.4 3.0 19 135-153 6-24 (205)
311 2c9o_A RUVB-like 1; hexameric 77.3 1.3 4.3E-05 43.2 3.1 18 136-153 63-80 (456)
312 2j37_W Signal recognition part 77.3 31 0.0011 33.8 12.9 17 138-154 103-119 (504)
313 2px0_A Flagellar biosynthesis 77.1 2.7 9.2E-05 38.2 5.0 19 136-154 105-123 (296)
314 4fcw_A Chaperone protein CLPB; 77.1 2 6.7E-05 39.2 4.2 17 137-153 48-64 (311)
315 1knq_A Gluconate kinase; ALFA/ 76.9 1.1 3.6E-05 37.0 2.1 18 136-153 8-25 (175)
316 3fb4_A Adenylate kinase; psych 76.9 1.1 3.8E-05 38.4 2.3 16 138-153 2-17 (216)
317 1yks_A Genome polyprotein [con 76.8 3.8 0.00013 39.6 6.3 69 173-250 177-245 (440)
318 1iy2_A ATP-dependent metallopr 76.7 1.4 4.8E-05 39.6 3.0 54 97-153 35-90 (278)
319 1xp8_A RECA protein, recombina 76.6 2.3 7.8E-05 40.0 4.5 40 135-183 73-112 (366)
320 2db3_A ATP-dependent RNA helic 76.6 10 0.00035 36.4 9.3 69 175-251 302-374 (434)
321 2ffh_A Protein (FFH); SRP54, s 76.5 25 0.00086 33.6 11.8 20 135-154 97-116 (425)
322 4eun_A Thermoresistant glucoki 76.5 1.3 4.3E-05 37.6 2.5 19 135-153 28-46 (200)
323 3dl0_A Adenylate kinase; phosp 76.5 1.2 4E-05 38.3 2.3 16 138-153 2-17 (216)
324 1xti_A Probable ATP-dependent 76.4 7.2 0.00025 36.5 8.1 76 172-255 249-328 (391)
325 1zuh_A Shikimate kinase; alpha 76.4 1.2 4.1E-05 36.4 2.2 17 137-153 8-24 (168)
326 4gp7_A Metallophosphoesterase; 76.3 1.1 3.9E-05 36.9 2.1 19 135-153 8-26 (171)
327 3d8b_A Fidgetin-like protein 1 76.3 1.4 4.8E-05 41.3 3.0 18 136-153 117-134 (357)
328 2r62_A Cell division protease 76.1 0.83 2.8E-05 40.8 1.3 18 136-153 44-61 (268)
329 2ius_A DNA translocase FTSK; n 76.1 2.1 7.2E-05 42.1 4.2 25 136-161 167-191 (512)
330 3crm_A TRNA delta(2)-isopenten 76.0 1.5 5.1E-05 40.3 2.9 16 138-153 7-22 (323)
331 1gku_B Reverse gyrase, TOP-RG; 75.8 4.8 0.00016 43.7 7.3 77 342-420 97-184 (1054)
332 3sr0_A Adenylate kinase; phosp 75.7 1.6 5.6E-05 37.3 3.0 17 137-153 1-17 (206)
333 2j0s_A ATP-dependent RNA helic 75.6 11 0.00037 35.6 9.2 73 173-253 276-352 (410)
334 3b9q_A Chloroplast SRP recepto 75.4 2.4 8.1E-05 38.7 4.2 19 135-153 99-117 (302)
335 1m7g_A Adenylylsulfate kinase; 75.3 2 6.9E-05 36.7 3.5 31 122-153 12-42 (211)
336 1via_A Shikimate kinase; struc 75.2 1.5 5E-05 36.2 2.5 16 138-153 6-21 (175)
337 1tev_A UMP-CMP kinase; ploop, 75.0 1.2 4.2E-05 37.2 2.0 17 137-153 4-20 (196)
338 1z6g_A Guanylate kinase; struc 74.9 2 7E-05 36.9 3.4 19 134-152 21-39 (218)
339 1s2m_A Putative ATP-dependent 74.9 10 0.00035 35.7 8.7 72 173-252 258-333 (400)
340 1xjc_A MOBB protein homolog; s 74.8 4.1 0.00014 33.5 5.0 15 138-152 6-20 (169)
341 3a00_A Guanylate kinase, GMP k 74.7 2 6.9E-05 35.8 3.3 17 137-153 2-18 (186)
342 2c95_A Adenylate kinase 1; tra 74.6 1.5 5.1E-05 36.8 2.4 19 135-153 8-26 (196)
343 2iyv_A Shikimate kinase, SK; t 74.6 1.6 5.6E-05 36.2 2.7 17 137-153 3-19 (184)
344 3t61_A Gluconokinase; PSI-biol 74.5 1.4 4.8E-05 37.3 2.3 17 137-153 19-35 (202)
345 1ye8_A Protein THEP1, hypothet 74.4 1.9 6.4E-05 35.9 2.9 15 138-152 2-16 (178)
346 1g8p_A Magnesium-chelatase 38 74.4 1 3.5E-05 42.0 1.5 18 136-153 45-62 (350)
347 3ney_A 55 kDa erythrocyte memb 74.4 1.9 6.6E-05 36.4 3.0 19 135-153 18-36 (197)
348 2pt5_A Shikimate kinase, SK; a 74.3 1.5 5E-05 35.8 2.2 16 138-153 2-17 (168)
349 3ly5_A ATP-dependent RNA helic 74.3 8 0.00027 34.2 7.3 74 343-420 125-210 (262)
350 3d3q_A TRNA delta(2)-isopenten 74.3 1.8 6E-05 40.2 3.0 16 138-153 9-24 (340)
351 2rhm_A Putative kinase; P-loop 74.2 1.3 4.5E-05 37.0 2.0 17 137-153 6-22 (193)
352 1in4_A RUVB, holliday junction 74.1 1.9 6.4E-05 40.0 3.2 17 137-153 52-68 (334)
353 2oca_A DAR protein, ATP-depend 74.0 21 0.00072 34.9 11.1 77 173-256 347-427 (510)
354 3iuy_A Probable ATP-dependent 74.0 6 0.0002 34.0 6.3 75 343-421 93-177 (228)
355 3nwj_A ATSK2; P loop, shikimat 73.8 2.6 9E-05 37.2 3.9 20 134-153 46-65 (250)
356 1aky_A Adenylate kinase; ATP:A 73.8 1.6 5.5E-05 37.5 2.5 18 136-153 4-21 (220)
357 2bdt_A BH3686; alpha-beta prot 73.8 1.5 5.2E-05 36.6 2.3 16 138-153 4-19 (189)
358 2iut_A DNA translocase FTSK; n 73.6 4.7 0.00016 40.1 6.0 25 137-162 215-239 (574)
359 3c8u_A Fructokinase; YP_612366 73.3 2.4 8.2E-05 36.1 3.5 16 136-151 22-37 (208)
360 1e6c_A Shikimate kinase; phosp 73.2 1.7 5.9E-05 35.5 2.5 17 137-153 3-19 (173)
361 1znw_A Guanylate kinase, GMP k 73.2 2.2 7.5E-05 36.3 3.2 21 132-152 16-36 (207)
362 1g41_A Heat shock protein HSLU 73.2 6.3 0.00021 38.0 6.6 18 136-153 50-67 (444)
363 2cdn_A Adenylate kinase; phosp 73.2 1.7 5.9E-05 36.7 2.5 17 137-153 21-37 (201)
364 3pxg_A Negative regulator of g 73.0 2 6.8E-05 42.0 3.2 18 136-153 201-218 (468)
365 1ex7_A Guanylate kinase; subst 73.0 1.8 6.1E-05 36.3 2.5 16 137-152 2-17 (186)
366 2qt1_A Nicotinamide riboside k 72.9 1.1 3.6E-05 38.3 1.1 22 132-153 17-38 (207)
367 1zd8_A GTP:AMP phosphotransfer 72.9 1.6 5.5E-05 37.8 2.3 18 136-153 7-24 (227)
368 1c4o_A DNA nucleotide excision 72.8 25 0.00084 36.0 11.4 77 173-257 439-519 (664)
369 2v54_A DTMP kinase, thymidylat 72.8 1.8 6.1E-05 36.6 2.5 19 135-153 3-21 (204)
370 2v6i_A RNA helicase; membrane, 72.7 6.1 0.00021 38.0 6.6 68 173-249 171-238 (431)
371 1gvn_B Zeta; postsegregational 72.6 1.6 5.4E-05 39.6 2.2 17 137-153 34-50 (287)
372 1s96_A Guanylate kinase, GMP k 72.4 1.8 6.3E-05 37.3 2.5 20 133-152 13-32 (219)
373 1e4v_A Adenylate kinase; trans 72.4 1.6 5.5E-05 37.4 2.1 16 138-153 2-17 (214)
374 3cmw_A Protein RECA, recombina 72.4 8 0.00027 43.9 8.0 52 137-200 1432-1483(1706)
375 1qde_A EIF4A, translation init 72.2 7.3 0.00025 33.2 6.4 91 325-420 59-164 (224)
376 1ry6_A Internal kinesin; kines 72.1 2.4 8.2E-05 39.7 3.3 20 135-154 82-103 (360)
377 1vma_A Cell division protein F 72.0 4.1 0.00014 37.1 4.9 18 137-154 105-122 (306)
378 3f9v_A Minichromosome maintena 71.9 2 6.8E-05 43.4 3.0 16 138-153 329-344 (595)
379 2wv9_A Flavivirin protease NS2 71.9 8.8 0.0003 39.3 7.8 68 173-250 410-478 (673)
380 1nks_A Adenylate kinase; therm 71.5 1.7 6E-05 36.2 2.1 16 138-153 3-18 (194)
381 2bwj_A Adenylate kinase 5; pho 71.4 1.7 5.8E-05 36.5 2.0 18 136-153 12-29 (199)
382 3uie_A Adenylyl-sulfate kinase 71.4 2.3 7.8E-05 36.0 2.8 19 135-153 24-42 (200)
383 1zak_A Adenylate kinase; ATP:A 71.4 2 6.9E-05 37.0 2.6 17 137-153 6-22 (222)
384 2i3b_A HCR-ntpase, human cance 71.1 3.6 0.00012 34.5 4.0 41 243-286 103-145 (189)
385 2og2_A Putative signal recogni 71.1 3.4 0.00011 38.7 4.1 17 137-153 158-174 (359)
386 2jlq_A Serine protease subunit 71.1 9.8 0.00034 36.8 7.7 69 173-250 188-256 (451)
387 1f2t_A RAD50 ABC-ATPase; DNA d 71.0 3.2 0.00011 33.2 3.5 15 138-152 25-39 (149)
388 1qf9_A UMP/CMP kinase, protein 70.9 1.8 6.3E-05 36.0 2.1 16 138-153 8-23 (194)
389 3tlx_A Adenylate kinase 2; str 70.9 2.1 7E-05 37.7 2.5 18 136-153 29-46 (243)
390 3be4_A Adenylate kinase; malar 70.8 1.9 6.6E-05 37.0 2.3 18 136-153 5-22 (217)
391 3e70_C DPA, signal recognition 70.8 3.5 0.00012 38.1 4.1 53 245-297 211-264 (328)
392 2pez_A Bifunctional 3'-phospho 70.7 1.9 6.4E-05 35.7 2.1 19 135-153 4-22 (179)
393 2plr_A DTMP kinase, probable t 70.5 1.8 6E-05 36.8 2.0 18 136-153 4-21 (213)
394 4dzz_A Plasmid partitioning pr 70.5 12 0.00043 31.1 7.4 32 222-256 55-86 (206)
395 2vli_A Antibiotic resistance p 70.2 1.7 5.7E-05 36.0 1.7 18 136-153 5-22 (183)
396 1jjv_A Dephospho-COA kinase; P 70.2 2 6.9E-05 36.4 2.3 16 138-153 4-19 (206)
397 3eph_A TRNA isopentenyltransfe 70.2 2.3 7.9E-05 40.3 2.8 16 138-153 4-19 (409)
398 1tf7_A KAIC; homohexamer, hexa 70.0 16 0.00055 36.1 9.1 124 133-283 278-413 (525)
399 4f4c_A Multidrug resistance pr 70.0 11 0.00038 42.0 8.6 41 243-283 570-610 (1321)
400 2v9p_A Replication protein E1; 70.0 3 0.0001 38.0 3.5 17 135-151 125-141 (305)
401 2jaq_A Deoxyguanosine kinase; 70.0 2 7E-05 36.1 2.2 16 138-153 2-17 (205)
402 2yvu_A Probable adenylyl-sulfa 69.9 2 6.8E-05 35.8 2.1 18 136-153 13-30 (186)
403 1ak2_A Adenylate kinase isoenz 69.8 2.2 7.6E-05 37.1 2.5 18 136-153 16-33 (233)
404 1cke_A CK, MSSA, protein (cyti 69.8 2 7E-05 37.0 2.3 17 137-153 6-22 (227)
405 2if2_A Dephospho-COA kinase; a 69.7 2 6.8E-05 36.3 2.1 16 138-153 3-18 (204)
406 1ukz_A Uridylate kinase; trans 69.4 2.2 7.4E-05 36.1 2.3 16 138-153 17-32 (203)
407 2wwf_A Thymidilate kinase, put 69.2 2.2 7.7E-05 36.2 2.3 19 135-153 9-27 (212)
408 4akg_A Glutathione S-transfera 69.1 5.8 0.0002 47.3 6.3 48 106-154 890-941 (2695)
409 2oxc_A Probable ATP-dependent 69.0 8.9 0.0003 33.0 6.3 73 343-420 91-175 (230)
410 3lnc_A Guanylate kinase, GMP k 68.9 1.9 6.4E-05 37.5 1.8 20 134-153 25-44 (231)
411 3o8b_A HCV NS3 protease/helica 68.8 9.6 0.00033 38.8 7.1 67 172-250 395-461 (666)
412 2yjt_D ATP-dependent RNA helic 71.8 1 3.5E-05 37.1 0.0 73 173-253 30-106 (170)
413 3asz_A Uridine kinase; cytidin 68.7 2.1 7.1E-05 36.5 2.0 18 136-153 6-23 (211)
414 2pbr_A DTMP kinase, thymidylat 68.7 2.3 7.9E-05 35.5 2.3 16 138-153 2-17 (195)
415 1zu4_A FTSY; GTPase, signal re 68.5 5.2 0.00018 36.7 4.8 19 136-154 105-123 (320)
416 2yhs_A FTSY, cell division pro 68.2 4.1 0.00014 39.8 4.1 16 138-153 295-310 (503)
417 3umf_A Adenylate kinase; rossm 68.0 3.1 0.00011 35.8 2.9 17 137-153 30-46 (217)
418 3k1j_A LON protease, ATP-depen 67.9 4.3 0.00015 41.1 4.4 23 131-153 55-77 (604)
419 1nn5_A Similar to deoxythymidy 67.9 2.5 8.6E-05 35.9 2.4 19 135-153 8-26 (215)
420 2xb4_A Adenylate kinase; ATP-b 67.7 2.4 8.3E-05 36.6 2.2 16 138-153 2-17 (223)
421 1htw_A HI0065; nucleotide-bind 67.7 3.2 0.00011 33.6 2.8 18 134-151 31-48 (158)
422 3a4m_A L-seryl-tRNA(SEC) kinas 67.6 2.4 8.2E-05 37.6 2.3 17 137-153 5-21 (260)
423 4a74_A DNA repair and recombin 67.1 2.4 8.2E-05 36.5 2.1 19 135-153 24-42 (231)
424 1v5w_A DMC1, meiotic recombina 66.8 2.8 9.5E-05 39.0 2.6 57 136-195 122-179 (343)
425 1ypw_A Transitional endoplasmi 66.8 2.2 7.6E-05 44.8 2.1 57 97-153 472-528 (806)
426 2v3c_C SRP54, signal recogniti 66.4 5.1 0.00017 38.6 4.4 19 137-155 100-118 (432)
427 2z0h_A DTMP kinase, thymidylat 66.3 2.7 9.4E-05 35.1 2.3 15 139-153 3-17 (197)
428 3kta_A Chromosome segregation 66.2 3.6 0.00012 33.9 3.0 15 138-152 28-42 (182)
429 2bbw_A Adenylate kinase 4, AK4 66.2 2.7 9.1E-05 36.9 2.3 17 137-153 28-44 (246)
430 2p5t_B PEZT; postsegregational 65.7 2 6.7E-05 38.0 1.3 17 137-153 33-49 (253)
431 3cmw_A Protein RECA, recombina 65.7 7.4 0.00025 44.1 6.0 41 135-184 33-73 (1706)
432 3tif_A Uncharacterized ABC tra 65.6 2.6 8.8E-05 36.8 2.0 17 135-151 30-46 (235)
433 2vhj_A Ntpase P4, P4; non- hyd 65.4 3.7 0.00013 37.6 3.0 21 135-155 122-142 (331)
434 3pxi_A Negative regulator of g 65.4 3.4 0.00012 43.1 3.2 18 136-153 201-218 (758)
435 4h1g_A Maltose binding protein 65.1 4.2 0.00014 42.1 3.8 25 129-153 454-480 (715)
436 1c9k_A COBU, adenosylcobinamid 65.0 4.5 0.00016 33.6 3.3 15 139-153 2-16 (180)
437 1nij_A Hypothetical protein YJ 65.0 3.6 0.00012 37.8 3.0 13 139-151 7-19 (318)
438 1uf9_A TT1252 protein; P-loop, 64.9 2.8 9.7E-05 35.2 2.1 16 138-153 10-25 (203)
439 2grj_A Dephospho-COA kinase; T 64.7 3.1 0.00011 35.0 2.3 15 139-153 15-29 (192)
440 1np6_A Molybdopterin-guanine d 64.1 5.2 0.00018 33.0 3.5 14 138-151 8-21 (174)
441 3qf7_A RAD50; ABC-ATPase, ATPa 63.7 4.3 0.00015 38.1 3.3 16 138-153 25-40 (365)
442 2cbz_A Multidrug resistance-as 63.6 3 0.0001 36.5 2.0 17 135-151 30-46 (237)
443 2dhr_A FTSH; AAA+ protein, hex 62.9 3.2 0.00011 40.8 2.2 54 97-153 26-81 (499)
444 1sgw_A Putative ABC transporte 62.9 3.3 0.00011 35.5 2.1 17 135-151 34-50 (214)
445 2z0m_A 337AA long hypothetical 62.8 20 0.00069 32.4 7.8 71 172-254 219-293 (337)
446 3dkp_A Probable ATP-dependent 62.3 5.2 0.00018 34.8 3.4 76 343-421 97-185 (245)
447 4e22_A Cytidylate kinase; P-lo 62.3 4.7 0.00016 35.5 3.1 19 135-153 26-44 (252)
448 1vht_A Dephospho-COA kinase; s 62.3 3.6 0.00012 35.2 2.3 17 137-153 5-21 (218)
449 1rz3_A Hypothetical protein rb 62.1 3.5 0.00012 34.9 2.1 17 137-153 23-39 (201)
450 3auy_A DNA double-strand break 61.9 3.3 0.00011 39.0 2.1 15 138-152 27-41 (371)
451 3vkg_A Dynein heavy chain, cyt 61.9 18 0.00062 43.8 8.5 77 106-189 873-953 (3245)
452 3qks_A DNA double-strand break 61.8 5.8 0.0002 33.6 3.5 15 138-152 25-39 (203)
453 1j8m_F SRP54, signal recogniti 61.8 8.3 0.00028 34.9 4.7 19 136-154 98-116 (297)
454 4akg_A Glutathione S-transfera 61.2 3.5 0.00012 49.1 2.5 20 134-153 1265-1284(2695)
455 3gfo_A Cobalt import ATP-bindi 61.0 3.4 0.00012 37.0 1.9 17 135-151 33-49 (275)
456 2whx_A Serine protease/ntpase/ 61.0 21 0.0007 36.2 7.9 69 173-250 355-423 (618)
457 2pze_A Cystic fibrosis transme 60.9 3.5 0.00012 35.8 1.9 17 135-151 33-49 (229)
458 3bs4_A Uncharacterized protein 60.8 9.3 0.00032 33.8 4.7 53 136-198 21-73 (260)
459 2ff7_A Alpha-hemolysin translo 60.5 3.6 0.00012 36.2 1.9 17 135-151 34-50 (247)
460 2ghi_A Transport protein; mult 60.4 3.6 0.00012 36.5 2.0 17 135-151 45-61 (260)
461 3tqf_A HPR(Ser) kinase; transf 60.3 4.8 0.00017 33.1 2.5 19 135-153 15-33 (181)
462 2f1r_A Molybdopterin-guanine d 60.3 3 0.0001 34.4 1.3 16 138-153 4-19 (171)
463 1uj2_A Uridine-cytidine kinase 60.1 4.1 0.00014 35.9 2.3 16 138-153 24-39 (252)
464 3cmu_A Protein RECA, recombina 60.1 7.2 0.00025 44.9 4.7 46 135-190 1080-1125(2050)
465 3aez_A Pantothenate kinase; tr 60.0 6.4 0.00022 36.0 3.6 25 136-162 90-114 (312)
466 2pcj_A ABC transporter, lipopr 59.8 3.6 0.00012 35.6 1.8 17 135-151 29-45 (224)
467 2jeo_A Uridine-cytidine kinase 59.7 3.7 0.00013 36.0 1.9 18 136-153 25-42 (245)
468 1odf_A YGR205W, hypothetical 3 59.7 4.1 0.00014 36.8 2.3 15 139-153 34-48 (290)
469 1ltq_A Polynucleotide kinase; 59.4 4.1 0.00014 36.9 2.3 16 138-153 4-19 (301)
470 1w36_B RECB, exodeoxyribonucle 59.1 15 0.00051 40.5 7.0 59 138-196 18-79 (1180)
471 1ji0_A ABC transporter; ATP bi 58.9 3.9 0.00014 35.8 1.9 17 135-151 31-47 (240)
472 1g6h_A High-affinity branched- 58.7 4 0.00014 36.2 1.9 17 135-151 32-48 (257)
473 4g1u_C Hemin import ATP-bindin 58.7 3.9 0.00013 36.4 1.9 17 135-151 36-52 (266)
474 3ake_A Cytidylate kinase; CMP 58.6 4.6 0.00016 34.0 2.3 16 138-153 4-19 (208)
475 1mv5_A LMRA, multidrug resista 58.5 3.6 0.00012 36.1 1.6 17 135-151 27-43 (243)
476 3tqc_A Pantothenate kinase; bi 58.4 6.9 0.00024 35.9 3.5 15 139-153 95-109 (321)
477 3fmo_B ATP-dependent RNA helic 58.4 12 0.00041 33.8 5.2 71 344-421 162-245 (300)
478 2f6r_A COA synthase, bifunctio 58.4 4.3 0.00015 36.5 2.1 16 138-153 77-92 (281)
479 1b0u_A Histidine permease; ABC 58.1 4.2 0.00014 36.2 2.0 17 135-151 31-47 (262)
480 1r6b_X CLPA protein; AAA+, N-t 58.0 6.1 0.00021 41.2 3.5 16 138-153 490-505 (758)
481 1vpl_A ABC transporter, ATP-bi 57.6 4.3 0.00015 35.9 2.0 17 135-151 40-56 (256)
482 2qi9_C Vitamin B12 import ATP- 57.4 4.3 0.00015 35.8 1.9 17 135-151 25-41 (249)
483 2ixe_A Antigen peptide transpo 57.2 4.4 0.00015 36.2 2.0 32 243-274 172-203 (271)
484 1q57_A DNA primase/helicase; d 57.1 6.3 0.00021 38.8 3.3 51 135-194 241-291 (503)
485 3r20_A Cytidylate kinase; stru 57.1 5 0.00017 34.9 2.3 17 137-153 10-26 (233)
486 2va8_A SSO2462, SKI2-type heli 57.1 29 0.001 35.7 8.5 73 173-251 252-362 (715)
487 1ypw_A Transitional endoplasmi 56.9 4.6 0.00016 42.5 2.3 19 135-153 237-255 (806)
488 2yz2_A Putative ABC transporte 56.8 4.5 0.00015 36.0 2.0 17 135-151 32-48 (266)
489 2xau_A PRE-mRNA-splicing facto 56.6 27 0.00092 36.4 8.1 73 173-251 303-393 (773)
490 2olj_A Amino acid ABC transpor 56.5 4.6 0.00016 35.9 2.0 17 135-151 49-65 (263)
491 2nq2_C Hypothetical ABC transp 56.4 4.5 0.00015 35.7 1.9 17 135-151 30-46 (253)
492 2h92_A Cytidylate kinase; ross 56.4 5.9 0.0002 33.8 2.6 17 137-153 4-20 (219)
493 2fsf_A Preprotein translocase 56.2 28 0.00097 36.3 7.9 70 342-417 113-200 (853)
494 1qvr_A CLPB protein; coiled co 56.2 4.8 0.00016 42.7 2.4 16 138-153 590-605 (854)
495 1fuu_A Yeast initiation factor 56.1 25 0.00085 32.7 7.3 73 343-420 88-171 (394)
496 2ihy_A ABC transporter, ATP-bi 56.0 4.6 0.00016 36.2 1.9 17 135-151 46-62 (279)
497 2d2e_A SUFC protein; ABC-ATPas 55.6 6.1 0.00021 34.7 2.6 17 135-151 28-44 (250)
498 2zu0_C Probable ATP-dependent 55.5 6.2 0.00021 35.1 2.7 17 135-151 45-61 (267)
499 1svm_A Large T antigen; AAA+ f 55.2 6.7 0.00023 36.9 2.9 19 135-153 168-186 (377)
500 3qkt_A DNA double-strand break 55.2 5.3 0.00018 37.0 2.3 15 139-153 26-40 (339)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=8.2e-60 Score=467.88 Aligned_cols=373 Identities=34% Similarity=0.548 Sum_probs=324.8
Q ss_pred CCccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCC
Q 011901 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (475)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 173 (475)
.+.+..+|+++++++.+++.+.+.|+.+|||+|.++++.+++|++++++++||||||++|++|++..+.+.... ....+
T Consensus 51 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~ 129 (434)
T 2db3_A 51 VPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LELGR 129 (434)
T ss_dssp CCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CCTTC
T ss_pred CCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-cccCC
Confidence 34566789999999999999999999999999999999999999999999999999999999999998763221 12346
Q ss_pred CeEEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEE
Q 011901 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (475)
Q Consensus 174 ~~~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vVi 251 (475)
++++|++||++|+.|++++++++.. ++++.+++|+.....+...+..+++|+|+||++|.+++.++...+.+++++|+
T Consensus 130 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 130 PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred ccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 7899999999999999999999874 46677889998888777778888999999999999999988888999999999
Q ss_pred ecccccccCCchHHHHHHHHhC--CCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCcc
Q 011901 252 DEADQMLSVGFAEDVEVILERL--PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329 (475)
Q Consensus 252 DE~H~~~~~~~~~~~~~i~~~~--~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (475)
||||++.+++|...+..++..+ ++..|++++|||+++.+..+...++.++..+..... ......+.+.........
T Consensus 210 DEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~ 287 (434)
T 2db3_A 210 DEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV--GGACSDVKQTIYEVNKYA 287 (434)
T ss_dssp ETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESST--TCCCTTEEEEEEECCGGG
T ss_pred ccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccc--cccccccceEEEEeCcHH
Confidence 9999999999999999999875 578899999999999999999999988887765322 223345556666666677
Q ss_pred chHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCC
Q 011901 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408 (475)
Q Consensus 330 ~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid 408 (475)
|...+..++.... .++||||++++.++.+++.|.+ ++.+..+||++++.+|+.+++.|++|+.+|||||+++++|+|
T Consensus 288 k~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlD 365 (434)
T 2db3_A 288 KRSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLD 365 (434)
T ss_dssp HHHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCC
T ss_pred HHHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCC
Confidence 7777877777653 4599999999999999999975 588999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecc-hhHHHHHHHHHHhCCCcccccC
Q 011901 409 VPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD-QQARQVKSIERDVGCRFTQVTS 471 (475)
Q Consensus 409 i~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~ 471 (475)
+|++++||++|+|.+..+|+||+||+||.|+.|.|++++++ ++...+..|.+.+.....++|.
T Consensus 366 i~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~ 429 (434)
T 2db3_A 366 IKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPD 429 (434)
T ss_dssp CTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCG
T ss_pred cccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999994 5666677777777666555553
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=4.2e-57 Score=447.04 Aligned_cols=366 Identities=35% Similarity=0.602 Sum_probs=321.5
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeE
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 176 (475)
...+|+++++++.+.+.+.+.|+.+|+|+|.++++.++.++++++++|||||||++|++|++..+.. ...+.++
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~~ 108 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------QVRETQA 108 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT------TSCSCCE
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh------ccCCceE
Confidence 3457899999999999999999999999999999999999999999999999999999999877522 1246789
Q ss_pred EEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecc
Q 011901 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (475)
Q Consensus 177 lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~ 254 (475)
+|++||++|+.|+++.+.++.. ++.+....|+.....+...+..+++|+|+||+.|.+.+.++...+.++++||+||+
T Consensus 109 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEa 188 (410)
T 2j0s_A 109 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA 188 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccH
Confidence 9999999999999999998865 45566778888877777777788999999999999999988888899999999999
Q ss_pred cccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccC-ccchHH
Q 011901 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM-YEKPSI 333 (475)
Q Consensus 255 H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 333 (475)
|++.++++...+..++..+++..|++++|||+++....+...++.++..+... ........+......... ..+...
T Consensus 189 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~ 266 (410)
T 2j0s_A 189 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK--RDELTLEGIKQFFVAVEREEWKFDT 266 (410)
T ss_dssp HHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC--GGGCSCTTEEEEEEEESSTTHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEec--CccccCCCceEEEEEeCcHHhHHHH
Confidence 99999999999999999999999999999999998888888888888766432 222233344444444333 336777
Q ss_pred HHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCC
Q 011901 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (475)
Q Consensus 334 l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~ 412 (475)
+..++... ..+++||||++.+.++.+++.|.+ ++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 267 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v 345 (410)
T 2j0s_A 267 LCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQV 345 (410)
T ss_dssp HHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTE
T ss_pred HHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccC
Confidence 77777765 346999999999999999999965 5889999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCcccccC
Q 011901 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVTS 471 (475)
Q Consensus 413 ~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (475)
++||++++|++...|.||+||+||.|++|.|++++++++...++.|++.++..++++|.
T Consensus 346 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 346 SLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred CEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 99999999999999999999999999999999999999999999999999999998873
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.8e-57 Score=448.46 Aligned_cols=374 Identities=34% Similarity=0.557 Sum_probs=321.2
Q ss_pred CccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhh-------
Q 011901 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK------- 167 (475)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~------- 167 (475)
+.+..+|+++++++.+.+.|...|+..|+|+|.++++.++.++++++++|||||||++|++|++..+......
T Consensus 11 p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 90 (417)
T 2i4i_A 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMK 90 (417)
T ss_dssp CCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccc
Confidence 4455679999999999999999999999999999999999999999999999999999999999988653211
Q ss_pred -----cCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCC
Q 011901 168 -----HGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA 240 (475)
Q Consensus 168 -----~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~ 240 (475)
.....+++++|++||++|+.|+++.++++.. ++.+..++|+.....+...+..+++|+|+||++|.+.+..+.
T Consensus 91 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~ 170 (417)
T 2i4i_A 91 ENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK 170 (417)
T ss_dssp HCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS
T ss_pred cccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCC
Confidence 0112347899999999999999999998764 566778888888777777777889999999999999999888
Q ss_pred CCCCCccEEEEecccccccCCchHHHHHHHHh--CCC--CCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCcccccc
Q 011901 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILER--LPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316 (475)
Q Consensus 241 ~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~--~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (475)
+.+.++++||+||+|++.+++|...+..++.. ++. ..|++++|||+++....+...++.++..+.... ......
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 248 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR--VGSTSE 248 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC------CCS
T ss_pred cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC--CCCCcc
Confidence 88999999999999999999999999988874 332 578999999999999999999988887665422 223344
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCc
Q 011901 317 GISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395 (475)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 395 (475)
.+...........+...+..+++....++++||||++++.++.+++.|.+ ++.+..+||++++++|..+++.|++|+.+
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 328 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred CceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC
Confidence 55555666666778888888888877788999999999999999999975 58899999999999999999999999999
Q ss_pred EEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccccc
Q 011901 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 396 vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (475)
|||||+++++|+|+|++++||++++|.+...|.||+||+||.|+.|.|++++++.+...++.|.+.+.....++|
T Consensus 329 vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 403 (417)
T 2i4i_A 329 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 403 (417)
T ss_dssp EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCC
T ss_pred EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999888855544443
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.9e-56 Score=438.72 Aligned_cols=366 Identities=31% Similarity=0.562 Sum_probs=320.4
Q ss_pred ccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCe
Q 011901 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 175 (475)
....+|+++++++.+.+.+.+.|+..|+|+|.++++.++.++++++.+|||||||++|++|++..+.. ...+.+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~------~~~~~~ 91 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP------KLNKIQ 91 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCSCC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh------ccCCcc
Confidence 44567999999999999999999999999999999999999999999999999999999999887632 124668
Q ss_pred EEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEec
Q 011901 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (475)
Q Consensus 176 ~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE 253 (475)
++|++|+++|+.|+++.+++++. ++.+....|+.....+......+++|+|+||+.|.+.+.+....+.++++||+||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 99999999999999999999876 4566777788776666666677899999999999999988877889999999999
Q ss_pred ccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHH
Q 011901 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333 (475)
Q Consensus 254 ~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (475)
+|++.+.++...+..++..+++..++++||||+++........++..+..+..... .....+..+........+...
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~ 248 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE---LTLKGITQYYAFVEERQKLHC 248 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS---CBCTTEEEEEEECCGGGHHHH
T ss_pred chHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc---cccCCceeEEEEechhhHHHH
Confidence 99998877888888888888889999999999999999888888888876644322 223345555555556667777
Q ss_pred HHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCC
Q 011901 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (475)
Q Consensus 334 l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~ 412 (475)
+..++... .++++||||++.+.++.+++.|.+ ++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 249 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~ 327 (400)
T 1s2m_A 249 LNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 327 (400)
T ss_dssp HHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTE
T ss_pred HHHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCC
Confidence 77777765 557999999999999999999975 5889999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCcccccC
Q 011901 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVTS 471 (475)
Q Consensus 413 ~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (475)
++||++++|++...|.||+||+||.|++|.|++++++.+...++.|++.++..++++|.
T Consensus 328 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 386 (400)
T 1s2m_A 328 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPA 386 (400)
T ss_dssp EEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCS
T ss_pred CEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999998874
No 5
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=5.3e-55 Score=429.33 Aligned_cols=365 Identities=26% Similarity=0.482 Sum_probs=317.0
Q ss_pred CcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEE
Q 011901 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~li 178 (475)
.+|+++++++.+.+.|.+.|+.+|+|+|.++++.++.++++++.+|||+|||++|++|++..+.. ...+.+++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~~li 81 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVLV 81 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC------CTTCCCEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc------cCCCeeEEE
Confidence 35889999999999999999999999999999999999999999999999999999999877532 123568999
Q ss_pred EcCCHHHHHHHHHHHHhhCC---CCceEEEEcCcchhHHHHHhh-cCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecc
Q 011901 179 LAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (475)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~ 254 (475)
++|+++|+.|+++++.++.. ++++..+.|+.........+. ..++|+|+||++|...+......+.++++||+||+
T Consensus 82 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEa 161 (391)
T 1xti_A 82 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 161 (391)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSH
T ss_pred ECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCH
Confidence 99999999999999988753 677888888877666555554 44899999999999999888888899999999999
Q ss_pred cccccC-CchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHH
Q 011901 255 DQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333 (475)
Q Consensus 255 H~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (475)
|++.++ ++...+..++...++..|++++|||+++....+...++..+..+...... .........+........+...
T Consensus 162 H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T 1xti_A 162 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET-KLTLHGLQQYYVKLKDNEKNRK 240 (391)
T ss_dssp HHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCC-CCCCTTCEEEEEECCGGGHHHH
T ss_pred HHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCcc-ccCcccceEEEEEcCchhHHHH
Confidence 999874 57778888888888899999999999999999999999888777543322 2233445556666666677778
Q ss_pred HHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCC
Q 011901 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (475)
Q Consensus 334 l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~ 412 (475)
+..+++.. .++++||||++++.++.+++.|.+ ++.+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 241 l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~ 319 (391)
T 1xti_A 241 LFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV 319 (391)
T ss_dssp HHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTE
T ss_pred HHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccC
Confidence 88888765 667999999999999999999975 4789999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecch-hHHHHHHHHHHhCCCcccccC
Q 011901 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ-QARQVKSIERDVGCRFTQVTS 471 (475)
Q Consensus 413 ~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~ 471 (475)
++||++++|++...|.||+||+||.|++|.|++++++. +...+..+++.++.+++++|.
T Consensus 320 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (391)
T 1xti_A 320 NIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 379 (391)
T ss_dssp EEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCS
T ss_pred CEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCc
Confidence 99999999999999999999999999999999999976 557789999999999999874
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-55 Score=436.92 Aligned_cols=367 Identities=32% Similarity=0.556 Sum_probs=304.4
Q ss_pred CccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCC
Q 011901 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (475)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 174 (475)
......|+++++++.+.+.+.+.|+..|+++|.++++.++.++++++++|||||||++|+++++..+.. ...+.
T Consensus 36 ~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~ 109 (414)
T 3eiq_A 36 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------DLKAT 109 (414)
T ss_dssp CCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT------TSCSC
T ss_pred cchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh------cCCce
Confidence 344456889999999999999999999999999999999999999999999999999999999987633 12467
Q ss_pred eEEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhh-cCCcEEEEccHHHHHHHHhCCCCCCCccEEEE
Q 011901 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (475)
Q Consensus 175 ~~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vVi 251 (475)
+++|++|+++|+.|+++.+++++. +..+....|+.........+. .+++|+|+||++|.+.+..+...+.++++||+
T Consensus 110 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 110 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred eEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 899999999999999999998764 455666677776665555554 66899999999999999988888899999999
Q ss_pred ecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEe-ccCccc
Q 011901 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSMYEK 330 (475)
Q Consensus 252 DE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 330 (475)
||+|++.++++...+..++..++++.|+++||||+++....+...++.++..+.... .......+...... .....+
T Consensus 190 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 267 (414)
T 3eiq_A 190 DEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK--EELTLEGIRQFYINVEREEWK 267 (414)
T ss_dssp CSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCC--CCCCTTSCCEEEEECSSSTTH
T ss_pred ECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecC--CccCCCCceEEEEEeChHHhH
Confidence 999999999999999999999999999999999999999999999998887765422 22223333443333 333446
Q ss_pred hHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCC
Q 011901 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (475)
Q Consensus 331 ~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi 409 (475)
...+..+++.. .++++||||++++.++.+++.|.+ ++.+..+||++++++|..+++.|++|+.+|||||+++++|+|+
T Consensus 268 ~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 346 (414)
T 3eiq_A 268 LDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDV 346 (414)
T ss_dssp HHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCG
T ss_pred HHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCc
Confidence 77777777765 456999999999999999999975 4889999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccccc
Q 011901 410 PNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 410 ~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (475)
|++++||+++.|.+..+|.||+||+||.|++|.|++++++.+...++.+++.++..++++|
T Consensus 347 p~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (414)
T 3eiq_A 347 QQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMP 407 (414)
T ss_dssp GGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECC
T ss_pred cCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999886
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2e-54 Score=421.40 Aligned_cols=357 Identities=37% Similarity=0.625 Sum_probs=311.3
Q ss_pred CCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcC-CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeE
Q 011901 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 176 (475)
..+|+++++++.+.+.|.+.|+..|+|+|.++++.++.+ +++++.+|||||||++|+++++..+.. ..+.++
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------~~~~~~ 77 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGIEA 77 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSCCE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------cCCCcE
Confidence 346889999999999999999999999999999999988 699999999999999999998876532 246789
Q ss_pred EEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecc
Q 011901 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (475)
Q Consensus 177 lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~ 254 (475)
++++|+++|+.|+++.+.++++ ++.+...+|+.........+. +++|+|+||+.|.+.+..+...+.++++||+||+
T Consensus 78 lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 156 (367)
T 1hv8_A 78 IILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEA 156 (367)
T ss_dssp EEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETH
T ss_pred EEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCc
Confidence 9999999999999999999865 456667777776655544444 6899999999999999888888899999999999
Q ss_pred cccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHH
Q 011901 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334 (475)
Q Consensus 255 H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 334 (475)
|++.++++...+..++..+++..++++||||+++........++.++..+.... ...+..........++...+
T Consensus 157 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l 230 (367)
T 1hv8_A 157 DEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI------NANIEQSYVEVNENERFEAL 230 (367)
T ss_dssp HHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS------SSSSEEEEEECCGGGHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC------CCCceEEEEEeChHHHHHHH
Confidence 999999899999999999999999999999999998888888887766554321 12344444555555666666
Q ss_pred HHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCC
Q 011901 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD 413 (475)
Q Consensus 335 ~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~ 413 (475)
..+++ ..+.+++|||++.+.++.+++.|.+ ++.+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 231 ~~~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 308 (367)
T 1hv8_A 231 CRLLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN 308 (367)
T ss_dssp HHHHC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS
T ss_pred HHHHh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC
Confidence 66655 3567999999999999999999975 57899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccccc
Q 011901 414 LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 414 ~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (475)
+||++++|++..+|.||+||+||.|++|.|++++++.+...+..|++.++.++++++
T Consensus 309 ~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 309 CVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp EEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred EEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 999999999999999999999999999999999999999999999999999988764
No 8
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=5.2e-54 Score=441.91 Aligned_cols=363 Identities=29% Similarity=0.494 Sum_probs=301.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHhhhhHh--cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCH
Q 011901 106 ISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
+++.+++++...|+..|+|+|.++++.++ .++++++++|||||||++|++|++..+...... ...++++||++||+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~--~~~~~~~lvl~Ptr 105 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQYMVKAVIVAPTR 105 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STTSCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc--ccCCCeEEEEcchH
Confidence 99999999999999999999999999999 678999999999999999999999988764322 23467899999999
Q ss_pred HHHHHHHHHHHhhC------CCCceEEEEcCcchhHHHHHh-hcCCcEEEEccHHHHHHHHhC-CCCCCCccEEEEeccc
Q 011901 184 ELAKQVEKEFHESA------PSLDTICVYGGTPISHQMRAL-DYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEAD 255 (475)
Q Consensus 184 ~La~q~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~l~~~-~~~~~~~~~vViDE~H 255 (475)
+|+.|+++.+.+++ +...+..+.|+.........+ ..+++|+|+||++|.+++.+. ...+.++++||+||||
T Consensus 106 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 185 (579)
T 3sqw_A 106 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 185 (579)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChH
Confidence 99999999998863 345677778887766665555 347999999999999888764 3457889999999999
Q ss_pred ccccCCchHHHHHHHHhCC-------CCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCC--ccccccCeeEEEEecc
Q 011901 256 QMLSVGFAEDVEVILERLP-------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS--DQKLADGISLYSIATS 326 (475)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 326 (475)
++.+++|...+..++..++ ..+|+++||||+++.+..+...++..+..+.+.... .......+........
T Consensus 186 ~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 265 (579)
T 3sqw_A 186 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE 265 (579)
T ss_dssp HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEES
T ss_pred HhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEec
Confidence 9999999999888877653 367999999999999999999998887766543221 2222233343333332
Q ss_pred Cc-c-chHHHHHH---HHHhccCCcEEEEecChhhHHHHHHHHHc----cCCcccccCCCCHHHHHHHHHHHhcCCCcEE
Q 011901 327 MY-E-KPSIIGQL---ITEHAKGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397 (475)
Q Consensus 327 ~~-~-~~~~l~~l---~~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 397 (475)
.. . ....+..+ +.....+.++||||+++..++.+++.|.+ ++.+..+||+|++.+|..+++.|++|+.+||
T Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vL 345 (579)
T 3sqw_A 266 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGIL 345 (579)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEE
T ss_pred chhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEE
Confidence 21 1 22223333 33334578999999999999999999975 5788999999999999999999999999999
Q ss_pred EecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccccc
Q 011901 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 398 vaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (475)
|||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.|++++++.+...++.|++..+..++..+
T Consensus 346 VaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~ 418 (579)
T 3sqw_A 346 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQE 418 (579)
T ss_dssp EECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEE
T ss_pred EEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988887654
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.9e-53 Score=421.18 Aligned_cols=364 Identities=27% Similarity=0.472 Sum_probs=305.7
Q ss_pred ccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcC--CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCC
Q 011901 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 173 (475)
....+|+++++++.+.+.+.+.|+..|+|+|.++++.++.+ +++++++|||||||++|++|++..+.. ...+
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~~~~ 95 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKY 95 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCS
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh------cCCC
Confidence 34567889999999999999999999999999999999987 899999999999999999999987633 2345
Q ss_pred CeEEEEcCCHHHHHHHHHHHHhhCC---CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHh-CCCCCCCccEE
Q 011901 174 PLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFV 249 (475)
Q Consensus 174 ~~~lil~Pt~~La~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~~~~v 249 (475)
++++|++||++|+.|+++.+.++.. +..+....++...... ...+++|+|+||++|.+.+.. +...+.++++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 6899999999999999998888753 5566666666543322 234579999999999998865 45667899999
Q ss_pred EEeccccccc-CCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEec-cC
Q 011901 250 VLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SM 327 (475)
Q Consensus 250 ViDE~H~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 327 (475)
|+||+|++.+ .++...+..+...++++.|++++|||+++....+...++.++..+.... .......+....... ..
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 250 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR--EEETLDTIKQYYVLCSSR 250 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCG--GGSSCTTEEEEEEECSSH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecc--ccccccCceEEEEEcCCh
Confidence 9999999886 5688888889999999999999999999999999999998887775432 223333444443333 33
Q ss_pred ccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccC
Q 011901 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406 (475)
Q Consensus 328 ~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 406 (475)
..+...+..++... .++++||||++++.++.+++.|.+ ++.+..+||+|+.++|..+++.|++|+.+|||||+++++|
T Consensus 251 ~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 329 (412)
T 3fht_A 251 DEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARG 329 (412)
T ss_dssp HHHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSS
T ss_pred HHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccC
Confidence 45566666666655 457999999999999999999975 5789999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCC------CChhHHHHhhhccCCCCCCCeEEEEecchh-HHHHHHHHHHhCCCcccccC
Q 011901 407 LDVPNVDLIIHYELP------NTSETFVHRTGRTGRAGKKGSAILIYTDQQ-ARQVKSIERDVGCRFTQVTS 471 (475)
Q Consensus 407 idi~~~~~vi~~~~p------~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~ 471 (475)
+|+|++++||+++.| .+..+|.||+||+||.|+.|.|++++++.+ ...+..+++.++..+++++.
T Consensus 330 idip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 330 IDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp CCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred CCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 999999999999999 467899999999999999999999998765 88899999999999998864
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=7.2e-54 Score=440.70 Aligned_cols=363 Identities=29% Similarity=0.492 Sum_probs=299.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHhhhhHh--cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCH
Q 011901 106 ISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
+++.+.+.+.+.|+..|+|+|.++++.++ .++++++++|||||||++|++|++..+.+.... ...++++||++||+
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~--~~~~~~~lil~Ptr 156 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQYMVKAVIVAPTR 156 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STTSCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--ccCCeeEEEEcCcH
Confidence 99999999999999999999999999999 678999999999999999999999998764322 22356899999999
Q ss_pred HHHHHHHHHHHhhC------CCCceEEEEcCcchhHHHHHh-hcCCcEEEEccHHHHHHHHhC-CCCCCCccEEEEeccc
Q 011901 184 ELAKQVEKEFHESA------PSLDTICVYGGTPISHQMRAL-DYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEAD 255 (475)
Q Consensus 184 ~La~q~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~l~~~-~~~~~~~~~vViDE~H 255 (475)
+|+.|+++.++++. +...+..++|+.........+ ..+++|+|+||++|.+++.+. ...++++++||+||||
T Consensus 157 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 236 (563)
T 3i5x_A 157 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 236 (563)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHH
Confidence 99999999998853 245577778887766655554 457999999999999888764 2357889999999999
Q ss_pred ccccCCchHHHHHHHHhCC-------CCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCC--ccccccCeeEEEEecc
Q 011901 256 QMLSVGFAEDVEVILERLP-------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS--DQKLADGISLYSIATS 326 (475)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 326 (475)
++.+++|...+..++..++ +..|+++||||+++.+..+...++..+..+.+.... .......+........
T Consensus 237 ~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (563)
T 3i5x_A 237 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE 316 (563)
T ss_dssp HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEES
T ss_pred HHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECc
Confidence 9999999998888877652 367899999999999999999888887666543221 1222233333333332
Q ss_pred Cc-cc-hHHHHH---HHHHhccCCcEEEEecChhhHHHHHHHHHc----cCCcccccCCCCHHHHHHHHHHHhcCCCcEE
Q 011901 327 MY-EK-PSIIGQ---LITEHAKGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397 (475)
Q Consensus 327 ~~-~~-~~~l~~---l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 397 (475)
.. .+ ...+.. .+.....+.++||||++++.++.+++.|.+ ++.+..+||+|++.+|..+++.|++|+.+||
T Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vL 396 (563)
T 3i5x_A 317 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGIL 396 (563)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEE
T ss_pred hhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEE
Confidence 22 11 122222 233335678999999999999999999975 5788999999999999999999999999999
Q ss_pred EecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccccc
Q 011901 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 398 vaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (475)
|||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.|++++++.+...++.|++..+..++..+
T Consensus 397 vaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~ 469 (563)
T 3i5x_A 397 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQE 469 (563)
T ss_dssp EECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEE
T ss_pred EEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988877654
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4e-53 Score=416.48 Aligned_cols=360 Identities=30% Similarity=0.530 Sum_probs=302.2
Q ss_pred CcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcC--CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeE
Q 011901 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 176 (475)
.+|+++++++.+.+.+.+.|+..|+|+|.++++.++.+ +++++++|||||||++|+++++..+.. ...++++
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~~~ 78 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP------EDASPQA 78 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------TCCSCCE
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc------CCCCccE
Confidence 56889999999999999999999999999999999998 899999999999999999999887632 2346789
Q ss_pred EEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecc
Q 011901 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (475)
Q Consensus 177 lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~ 254 (475)
+|++|+++|+.|+++.++++.. ++.+....++..... ...+++|+|+||+.+.+.+.+....+.++++||+||+
T Consensus 79 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 154 (395)
T 3pey_A 79 ICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEA 154 (395)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETH
T ss_pred EEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEECh
Confidence 9999999999999999999764 344455554443221 2346899999999999999888888999999999999
Q ss_pred ccccc-CCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEec-cCccchH
Q 011901 255 DQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SMYEKPS 332 (475)
Q Consensus 255 H~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 332 (475)
|++.+ .++...+..+...++++.|++++|||+++....+...++..+..+..... .............. ....+..
T Consensus 155 h~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 155 DNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTN--EVNVDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp HHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGG--GCSCTTEEEEEEECSSHHHHHH
T ss_pred hhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccc--ccccccccEEEEEcCchHHHHH
Confidence 99887 56888888899999999999999999999999999998888776654222 22223333333332 3344555
Q ss_pred HHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCC
Q 011901 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (475)
Q Consensus 333 ~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~ 411 (475)
.+..++... .++++||||++++.++.+++.|.+ ++.+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 233 ~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 311 (395)
T 3pey_A 233 VLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPT 311 (395)
T ss_dssp HHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTT
T ss_pred HHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCccc
Confidence 555555544 567999999999999999999975 478999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCC------ChhHHHHhhhccCCCCCCCeEEEEecc-hhHHHHHHHHHHhC-CCcccccC
Q 011901 412 VDLIIHYELPN------TSETFVHRTGRTGRAGKKGSAILIYTD-QQARQVKSIERDVG-CRFTQVTS 471 (475)
Q Consensus 412 ~~~vi~~~~p~------~~~~~~Q~~GR~gR~~~~g~~~~~~~~-~~~~~~~~i~~~~~-~~~~~~~~ 471 (475)
+++||+++.|+ +...|.||+||+||.|++|.|++++++ ++...+..+++.++ ..+..++.
T Consensus 312 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 379 (395)
T 3pey_A 312 VSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPT 379 (395)
T ss_dssp EEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCS
T ss_pred CCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCCh
Confidence 99999999999 999999999999999999999999986 55678899999998 77777664
No 12
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.6e-55 Score=431.96 Aligned_cols=365 Identities=31% Similarity=0.549 Sum_probs=178.8
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeE
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 176 (475)
....|+++++++.+.+.+.+.|+.+|+|+|.++++.++.++++++.+|||||||++|++|++..+.. ...++++
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~------~~~~~~~ 92 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQA 92 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT------TCCSCCE
T ss_pred ccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc------cCCCCCE
Confidence 3456889999999999999999999999999999999999999999999999999999999887633 1346789
Q ss_pred EEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecc
Q 011901 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (475)
Q Consensus 177 lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~ 254 (475)
++++|+++|+.|+++.+.++.. ++.+..+.|+.........+. +++|+|+||+.|...+.++...+.++++||+||+
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEa 171 (394)
T 1fuu_A 93 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 171 (394)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEECh
Confidence 9999999999999999998875 456777778777655544443 5899999999999999888888899999999999
Q ss_pred cccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEec-cCccchHH
Q 011901 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SMYEKPSI 333 (475)
Q Consensus 255 H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 333 (475)
|++.++++...+..++..+++..++++||||+++........++..+..+...... .....+..+.... ....+...
T Consensus 172 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 249 (394)
T 1fuu_A 172 DEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDE--LTLEGIKQFYVNVEEEEYKYEC 249 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------------------
T ss_pred HHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCcc--ccCCCceEEEEEcCchhhHHHH
Confidence 99998889999999999999999999999999999888888888888777553221 1112222222222 22225555
Q ss_pred HHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCC
Q 011901 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (475)
Q Consensus 334 l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~ 412 (475)
+..+++.. .+++++|||++++.++.+++.|.+ ++.+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 250 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~ 328 (394)
T 1fuu_A 250 LTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQV 328 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccC
Confidence 66666544 456999999999999999999965 4789999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCcccccC
Q 011901 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVTS 471 (475)
Q Consensus 413 ~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (475)
++||++++|++...|.||+||+||.|++|.|++++++++...++.+++.++..++++|.
T Consensus 329 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 387 (394)
T 1fuu_A 329 SLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 387 (394)
T ss_dssp -----------------------------------------------------------
T ss_pred CEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCc
Confidence 99999999999999999999999999999999999999999999999999999998874
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.7e-51 Score=395.96 Aligned_cols=334 Identities=34% Similarity=0.581 Sum_probs=281.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHH
Q 011901 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
+++.+.+.+.+.|+.+|+|+|.++++.+++++++++.+|||||||++|+++++.. +.++++++|+++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------~~~~liv~P~~~L 68 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPTREL 68 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------------TCCEEEECSSHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------cCCEEEEeCCHHH
Confidence 5788999999999999999999999999999999999999999999999998753 5669999999999
Q ss_pred HHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCch
Q 011901 186 AKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (475)
Q Consensus 186 a~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~ 263 (475)
+.|+++.++++.. +..+..++|+.........+. .++|+|+||+.|.+.+......+.++++||+||+|++.++++.
T Consensus 69 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 147 (337)
T 2z0m_A 69 TRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFI 147 (337)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccH
Confidence 9999999998765 456677777777665554444 4899999999999998887777889999999999999999999
Q ss_pred HHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhcc
Q 011901 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343 (475)
Q Consensus 264 ~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 343 (475)
..+..++...+...+++++|||+++........++.++..+... ................. ...+ ..+.. ..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~-~~~~~-~~ 219 (337)
T 2z0m_A 148 DDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-----IGLANVEHKFVHVKDDW-RSKV-QALRE-NK 219 (337)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-----GGGGGEEEEEEECSSSS-HHHH-HHHHT-CC
T ss_pred HHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-----cccCCceEEEEEeChHH-HHHH-HHHHh-CC
Confidence 99999999999999999999999999988888888877665321 11222333333333222 2222 33333 35
Q ss_pred CCcEEEEecChhhHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCC
Q 011901 344 GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNT 423 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~ 423 (475)
++++||||++.+.++.+++.|. .+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|++
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s 296 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD---NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQD 296 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT---TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSS
T ss_pred CCcEEEEEcCHHHHHHHHHHhh---hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCC
Confidence 6799999999999999998885 5788999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCC
Q 011901 424 SETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGC 464 (475)
Q Consensus 424 ~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~ 464 (475)
...|.||+||+||.|++|.|++++. .+...++.|++.+++
T Consensus 297 ~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 297 LRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp HHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred HHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 9999999999999999999999999 888888888887764
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.8e-54 Score=433.88 Aligned_cols=363 Identities=28% Similarity=0.484 Sum_probs=169.5
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcC--CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCC
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 174 (475)
+..+|+++++++.+.+.+.+.|+..|+|+|.++++.++.+ +++++++|||||||++|++|++..+.. ...++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~------~~~~~ 163 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYP 163 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT------TSCSC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh------cCCCC
Confidence 3457889999999999999999999999999999999987 899999999999999999999877633 12356
Q ss_pred eEEEEcCCHHHHHHHHHHHHhhC---CCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHh-CCCCCCCccEEE
Q 011901 175 LCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVV 250 (475)
Q Consensus 175 ~~lil~Pt~~La~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~~~~vV 250 (475)
+++|++||++|+.|+++.+.++. +++.+....++...... ...+.+|+|+||++|.+++.+ +.+.+.++++||
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEE
Confidence 89999999999999988877654 45666666665543321 234579999999999999866 445678999999
Q ss_pred Eeccccccc-CCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEE-eccCc
Q 011901 251 LDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI-ATSMY 328 (475)
Q Consensus 251 iDE~H~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 328 (475)
+||+|++.+ .++......+...++..+|++++|||+++....+...++.++..+...... .....+.+... .....
T Consensus 241 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~ 318 (479)
T 3fmp_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE--ETLDTIKQYYVLCSSRD 318 (479)
T ss_dssp ECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------
T ss_pred EECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccc--cCcCCceEEEEEeCCHH
Confidence 999999986 567888888888888999999999999999999999999888877653321 12222222222 22234
Q ss_pred cchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCC
Q 011901 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (475)
Q Consensus 329 ~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gi 407 (475)
.+...+..++... .+++++|||++++.++.+++.|.+ ++.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 319 ~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~Gl 397 (479)
T 3fmp_B 319 EKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGI 397 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCC
Confidence 4555666665544 456999999999999999999975 47899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCC------ChhHHHHhhhccCCCCCCCeEEEEecchh-HHHHHHHHHHhCCCcccccC
Q 011901 408 DVPNVDLIIHYELPN------TSETFVHRTGRTGRAGKKGSAILIYTDQQ-ARQVKSIERDVGCRFTQVTS 471 (475)
Q Consensus 408 di~~~~~vi~~~~p~------~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~ 471 (475)
|+|++++||++|+|. +...|+||+||+||.|+.|.|++++++.+ ...+..|++.++..+++++.
T Consensus 398 Dip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 468 (479)
T 3fmp_B 398 DVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 468 (479)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCC
Confidence 999999999999994 66899999999999999999999998765 78899999999998887753
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4.4e-50 Score=409.08 Aligned_cols=339 Identities=18% Similarity=0.318 Sum_probs=270.7
Q ss_pred ccCCCCCHHHHHHHHH-cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEE
Q 011901 101 ISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (475)
Q Consensus 101 ~~~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil 179 (475)
+.++++++.+.+.|.+ .|+.+|+|+|.++++.++.|+++++.+|||+|||++|++|++.. ..+++|+
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------------~g~~lVi 90 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------------DGFTLVI 90 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------------SSEEEEE
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------------CCcEEEE
Confidence 4468899999999998 69999999999999999999999999999999999999999742 4579999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHH------hhcCCcEEEEccHHHH------HHHHhCCCCCCCcc
Q 011901 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA------LDYGVDAVVGTPGRVI------DLIKRNALNLSEVQ 247 (475)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Ilv~T~~~l~------~~l~~~~~~~~~~~ 247 (475)
+|+++|+.|+.+.+.++ ++.+..+.++......... ...+++|+|+||++|. +.+.. ...+.+++
T Consensus 91 sP~~~L~~q~~~~l~~~--gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~ 167 (591)
T 2v1x_A 91 CPLISLMEDQLMVLKQL--GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFT 167 (591)
T ss_dssp CSCHHHHHHHHHHHHHH--TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEE
T ss_pred eCHHHHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCc
Confidence 99999999999999998 6777777777765544322 2456899999999874 22222 23467899
Q ss_pred EEEEecccccccCC--chHHHHH--HHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEE
Q 011901 248 FVVLDEADQMLSVG--FAEDVEV--ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323 (475)
Q Consensus 248 ~vViDE~H~~~~~~--~~~~~~~--i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (475)
+||+||||++.+|+ |...+.. .+....++.+++++|||+++.+......++..+....+...... ..+. +.+
T Consensus 168 ~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r---~nl~-~~v 243 (591)
T 2v1x_A 168 RIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNR---PNLY-YEV 243 (591)
T ss_dssp EEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCC---TTEE-EEE
T ss_pred EEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCC---cccE-EEE
Confidence 99999999999887 5555443 33333457899999999999888877777765544333222111 1122 222
Q ss_pred eccCccchHHHHH---HHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEe
Q 011901 324 ATSMYEKPSIIGQ---LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399 (475)
Q Consensus 324 ~~~~~~~~~~l~~---l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlva 399 (475)
......+...+.. ++.....++++||||++++.++.+++.|.+ ++.+..+||+|++++|..+++.|.+|+.+||||
T Consensus 244 ~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVA 323 (591)
T 2v1x_A 244 RQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVA 323 (591)
T ss_dssp EECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEE
T ss_pred EeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 2222223333333 343333578999999999999999999975 588999999999999999999999999999999
Q ss_pred cCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHH
Q 011901 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (475)
Q Consensus 400 T~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i 458 (475)
|+++++|+|+|++++||++++|.+.+.|.|++||+||.|++|.|++++++.|...+..+
T Consensus 324 T~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 324 TVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp CTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred echhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887665544
No 16
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.6e-52 Score=433.94 Aligned_cols=405 Identities=19% Similarity=0.246 Sum_probs=293.7
Q ss_pred chhhhHHhhhhcccc--hhhhhhhhhhhhccCCCCCCCcccccccCCccccccccccCCCCCCCchHhhhhhhccccccc
Q 011901 12 SFLTSKRALTAALTS--VETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVA 89 (475)
Q Consensus 12 ~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (475)
.+..++...++.+.+ .|+.|......+. +++...|+..+|+|++..++..+++++.|+|++.++.+.........
T Consensus 268 ~~~~~i~~~l~~~~~~~~e~lp~~~~~~~~---l~~~~~al~~iH~P~~~~~~~~a~~rl~~eEl~~~ql~l~~~r~~~~ 344 (780)
T 1gm5_A 268 QMRKIFEENIPSLCCSLKETLPERILEKRK---LLGVKDAYYGMHFPKTFYHLEKARERLAYEELFVLQLAFQKIRKERE 344 (780)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSCHHHHHHHC---CCCSHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCcCCHHHHHHcC---CCcHHHHHHhCCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455566666665321 3445544444443 67888999999999999999889999999999999876422111110
Q ss_pred cCCCCCccCCcccCCCCCHHHH-HHHHHcCCCCCcHHHHHhhhhHhcC------CcEEEEcCCCCchhHHHHHHHHHHHH
Q 011901 90 YDDSSKDEGLDISKLDISQDIV-AALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKII 162 (475)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~-~~l~~~~~~~l~~~Q~~~i~~i~~~------~~~li~~~tGsGKT~~~~~~~l~~l~ 162 (475)
. ..+. .+..+..+. +.+...++ +||++|.++++.++.+ ++++++|+||||||++|+++++..+.
T Consensus 345 ~-----~~~~---~~~~~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~ 415 (780)
T 1gm5_A 345 K-----HGGI---PKKIEGKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE 415 (780)
T ss_dssp H-----HCCC---CCCCCTHHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH
T ss_pred h-----ccCC---CCCCchHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 0 0111 122233444 44566777 8999999999999875 68999999999999999999998875
Q ss_pred hhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHH---hh-cCCcEEEEccHHHHHHH
Q 011901 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRA---LD-YGVDAVVGTPGRVIDLI 236 (475)
Q Consensus 163 ~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~-~~~~Ilv~T~~~l~~~l 236 (475)
+ +.++++++||++|+.|+++.+.+++. ++++..++|+.....+... +. +.++|+|+||+.|.+
T Consensus 416 ~---------g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-- 484 (780)
T 1gm5_A 416 A---------GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-- 484 (780)
T ss_dssp H---------TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH--
T ss_pred c---------CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh--
Confidence 4 67899999999999999999999876 5677888888876654332 23 359999999987754
Q ss_pred HhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCcccccc
Q 011901 237 KRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316 (475)
Q Consensus 237 ~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (475)
...+.++++||+||+|++. ......+......+++++|||||++....+.. .++.....+...... ..
T Consensus 485 ---~~~~~~l~lVVIDEaHr~g-----~~qr~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p~~--r~ 552 (780)
T 1gm5_A 485 ---DVHFKNLGLVIIDEQHRFG-----VKQREALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMPPG--RK 552 (780)
T ss_dssp ---CCCCSCCCEEEEESCCCC----------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCCSS--CC
T ss_pred ---hhhccCCceEEecccchhh-----HHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccCCC--Cc
Confidence 4568899999999999953 22222233334578999999999886554443 222211111111110 01
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChh--------hHHHHHHHHHc----cCCcccccCCCCHHHHHH
Q 011901 317 GISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKR--------DADRLAHAMAK----SYNCEPLHGDISQSQRER 384 (475)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~--------~~~~l~~~L~~----~~~~~~~h~~~~~~~r~~ 384 (475)
.+.. ...........+..+.+....+++++|||++++ .++.+++.|.+ ++.+..+||+|++++|+.
T Consensus 553 ~i~~--~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~ 630 (780)
T 1gm5_A 553 EVQT--MLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDR 630 (780)
T ss_dssp CCEE--CCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHH
T ss_pred ceEE--EEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHH
Confidence 1111 112223334455555566677899999999764 46777788876 367899999999999999
Q ss_pred HHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCC-ChhHHHHhhhccCCCCCCCeEEEEecchhHH
Q 011901 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (475)
Q Consensus 385 ~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~-~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~ 453 (475)
+++.|++|+.+|||||+++++|+|+|++++||++++|+ +.++|+||+||+||.|++|.|++++++.+..
T Consensus 631 v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 631 VMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp HHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred HHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 99999999999999999999999999999999999997 7899999999999999999999999853333
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-51 Score=415.40 Aligned_cols=361 Identities=28% Similarity=0.468 Sum_probs=254.2
Q ss_pred CCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcC--CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCe
Q 011901 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 175 (475)
..++...++++.+.+.+.+.|+..|+++|.++++.++++ +++++++|||||||++|+++++..+.. ...+++
T Consensus 118 l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~------~~~~~~ 191 (508)
T 3fho_A 118 XXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDA------SVPKPQ 191 (508)
T ss_dssp ---------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCT------TCCSCC
T ss_pred cccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHh------CCCCce
Confidence 334556778899999999999999999999999999998 899999999999999999999987633 123568
Q ss_pred EEEEcCCHHHHHHHHHHHHhhCCCCceEE--EEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEec
Q 011901 176 CLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (475)
Q Consensus 176 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE 253 (475)
++|++|+++|+.|+++.+++++....... ..++... .....+++|+|+||+.+.+.+.+....+.++++||+||
T Consensus 192 vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDE 267 (508)
T 3fho_A 192 AICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVP----KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDE 267 (508)
T ss_dssp EEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECC
T ss_pred EEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccc----ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEec
Confidence 99999999999999999999876544333 2222221 11233689999999999999988888899999999999
Q ss_pred cccccc-CCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeE-EEEeccCccch
Q 011901 254 ADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL-YSIATSMYEKP 331 (475)
Q Consensus 254 ~H~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 331 (475)
+|++.+ .++...+..+...++++.|+++||||+++....+...+..++..+...... .....+.. +........+.
T Consensus 268 aH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~k~ 345 (508)
T 3fho_A 268 ADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEE--LSVEGIKQLYMDCQSEEHKY 345 (508)
T ss_dssp HHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC------CCCCEEEEC--CHHHH
T ss_pred hhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEecccc--CCcccceEEEEECCchHHHH
Confidence 999887 568888999999999999999999999999999999998888766543221 11122222 22222334455
Q ss_pred HHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCC
Q 011901 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (475)
Q Consensus 332 ~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~ 410 (475)
..+..+++.. .++++||||++++.++.++..|.+ +..+..+||+++..+|+.+++.|++|+.+|||||+++++|+|+|
T Consensus 346 ~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip 424 (508)
T 3fho_A 346 NVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVS 424 (508)
T ss_dssp HHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCT
T ss_pred HHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCcc
Confidence 5566665544 567999999999999999999965 47899999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCC------CChhHHHHhhhccCCCCCCCeEEEEec-chhHHHHHHHHHHhCCCcccccC
Q 011901 411 NVDLIIHYELP------NTSETFVHRTGRTGRAGKKGSAILIYT-DQQARQVKSIERDVGCRFTQVTS 471 (475)
Q Consensus 411 ~~~~vi~~~~p------~~~~~~~Q~~GR~gR~~~~g~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~ 471 (475)
++++||+++.| .+...|.||+||+||.|++|.|+++++ +++...+..+++.++..+++++.
T Consensus 425 ~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 425 QVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp TCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred CCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 99999999999 789999999999999999999999998 45677899999999999998874
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2e-49 Score=400.48 Aligned_cols=338 Identities=20% Similarity=0.344 Sum_probs=268.4
Q ss_pred cccCCCCCHHHHHHHHH-cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEE
Q 011901 100 DISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~li 178 (475)
+|+++++++.+.+.|.+ .|+.+|+|+|.++++.+++|+++++.+|||+|||++|++|++.. ...++|
T Consensus 3 ~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~lv 70 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTVV 70 (523)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEEE
T ss_pred ChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCEEE
Confidence 57789999999999998 79999999999999999999999999999999999999998742 456999
Q ss_pred EcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHH----HhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecc
Q 011901 179 LAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR----ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (475)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~ 254 (475)
++|+++|+.|+.+.+.++ ++.+..+.++........ ...+.++|+++||++|........+...++++||+||+
T Consensus 71 i~P~~aL~~q~~~~l~~~--gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEa 148 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQAN--GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEA 148 (523)
T ss_dssp ECSCHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSG
T ss_pred ECChHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCc
Confidence 999999999999999987 567777777765444322 22356899999999985322112233578999999999
Q ss_pred cccccCC--chHHHH---HHHHhCCCCCcEEEEccCCChhHHHHHHhhc--CCCcEEEecCCCccccccCeeEEEEeccC
Q 011901 255 DQMLSVG--FAEDVE---VILERLPQNRQSMMFSATMPPWIRSLTNKYL--KNPLTVDLVGDSDQKLADGISLYSIATSM 327 (475)
Q Consensus 255 H~~~~~~--~~~~~~---~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (475)
|++.+|+ |...+. .+...+ ++.+++++|||+++.........+ .++.... .... ...+.. .....
T Consensus 149 H~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~---r~~l~~--~v~~~ 220 (523)
T 1oyw_A 149 HCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI--SSFD---RPNIRY--MLMEK 220 (523)
T ss_dssp GGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE--CCCC---CTTEEE--EEEEC
T ss_pred cccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe--CCCC---CCceEE--EEEeC
Confidence 9999876 544433 344555 468899999999998765444433 3333322 1111 112222 22223
Q ss_pred ccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccC
Q 011901 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406 (475)
Q Consensus 328 ~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 406 (475)
..+...+..++... .++++||||++++.++.+++.|.+ ++.+..+||+|++++|..+++.|.+|+.+|||||+++++|
T Consensus 221 ~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~G 299 (523)
T 1oyw_A 221 FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMG 299 (523)
T ss_dssp SSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTT
T ss_pred CCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCC
Confidence 44555566666554 567999999999999999999975 5889999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHH
Q 011901 407 LDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460 (475)
Q Consensus 407 idi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~ 460 (475)
+|+|++++||++++|.|.+.|.||+||+||.|++|.|++++++.|...++.+..
T Consensus 300 iD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988766555443
No 19
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=8.3e-49 Score=387.81 Aligned_cols=326 Identities=20% Similarity=0.288 Sum_probs=257.6
Q ss_pred HHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHH
Q 011901 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (475)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (475)
+++.+.+.+...++|+|+|.++++.++.++++++++|||||||++|+++++..+ ..+++++|++||++|+.
T Consensus 8 ~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~---------~~~~~~lil~Pt~~L~~ 78 (414)
T 3oiy_A 8 EDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---------RKGKKSALVFPTVTLVK 78 (414)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---------TTTCCEEEEESSHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---------cCCCEEEEEECCHHHHH
Confidence 345566666444589999999999999999999999999999999998888765 23778999999999999
Q ss_pred HHHHHHHhhCC-CCceEEEEcCcch---hHHHHHhhcC-CcEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccc---
Q 011901 188 QVEKEFHESAP-SLDTICVYGGTPI---SHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS--- 259 (475)
Q Consensus 188 q~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~-~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~--- 259 (475)
|+++.++++++ ++++..++|+... ......+..+ ++|+|+||+.|.+.+.. +.+.++++||+||+|++.+
T Consensus 79 q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~ 156 (414)
T 3oiy_A 79 QTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASR 156 (414)
T ss_dssp HHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHH
T ss_pred HHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccc
Confidence 99999999875 6778888888876 3344445444 99999999999887765 5577999999999997653
Q ss_pred --------CCchHH-HHHHHHhCC-----------CCCcEEEEccCC-ChhHH-HHHHhhcCCCcEEEecCCCccccccC
Q 011901 260 --------VGFAED-VEVILERLP-----------QNRQSMMFSATM-PPWIR-SLTNKYLKNPLTVDLVGDSDQKLADG 317 (475)
Q Consensus 260 --------~~~~~~-~~~i~~~~~-----------~~~~~i~~SAT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (475)
.+|... +..++..++ ...|++++|||+ +.... .+...+..- .. .........
T Consensus 157 ~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~ 230 (414)
T 3oiy_A 157 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNF----TV--GRLVSVARN 230 (414)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSC----CS--SCCCCCCCS
T ss_pred hhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhcc----Cc--Ccccccccc
Confidence 556666 777887765 788999999994 44332 223333221 00 111122233
Q ss_pred eeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcc-cccCCCCHHHHHHHHHHHhcCCCc
Q 011901 318 ISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCE-PLHGDISQSQRERTLSAFRDGRFN 395 (475)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~-~~h~~~~~~~r~~~~~~f~~g~~~ 395 (475)
+....... .+...+..+++. .++++||||++++.++.++..|.+ ++.+. .+||+ +|+ ++.|++|+.+
T Consensus 231 i~~~~~~~---~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~ 299 (414)
T 3oiy_A 231 ITHVRISS---RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKIN 299 (414)
T ss_dssp EEEEEESS---CCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCS
T ss_pred chheeecc---CHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCe
Confidence 34433332 466777777776 357999999999999999999975 57887 88985 444 9999999999
Q ss_pred EEEe----cCccccCCCCCC-CCEEEEcCCC--CChhHHHHhhhccCCCC----CCCeEEEEecchhHHHHHHHHHHhC
Q 011901 396 ILIA----TDVAARGLDVPN-VDLIIHYELP--NTSETFVHRTGRTGRAG----KKGSAILIYTDQQARQVKSIERDVG 463 (475)
Q Consensus 396 vlva----T~~~~~Gidi~~-~~~vi~~~~p--~~~~~~~Q~~GR~gR~~----~~g~~~~~~~~~~~~~~~~i~~~~~ 463 (475)
|||| |+++++|+|+|+ +++||+++.| .+...|+||+||+||.| +.|.|++++ ++...+..|++.++
T Consensus 300 vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 300 ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9999 999999999999 9999999999 89999999999999987 589999999 66777888888877
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.1e-47 Score=401.05 Aligned_cols=351 Identities=21% Similarity=0.311 Sum_probs=273.9
Q ss_pred cccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhh-HhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEE
Q 011901 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~li 178 (475)
+|+++++++.+.+.+.+.|+..|+++|.++++. +..++++++++|||||||++|.++++..+... +.+++|
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--------~~~~l~ 73 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--------GGKAVY 73 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------CSEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------CCEEEE
Confidence 478899999999999999999999999999998 88899999999999999999999999887631 678999
Q ss_pred EcCCHHHHHHHHHHHHhhCC-CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc
Q 011901 179 LAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (475)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~ 257 (475)
++|+++|+.|++++++++.. ++++..++|+...... ...+++|+|+||+++..++.+....++++++||+||+|.+
T Consensus 74 i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 74 IVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp ECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred EcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 99999999999999975433 5677777886654332 1235899999999999988887666889999999999999
Q ss_pred ccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCee---EEEEec----cCccc
Q 011901 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS---LYSIAT----SMYEK 330 (475)
Q Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~ 330 (475)
.+++++..+..++.+++++.++++||||+++. ..+.. ++..+. +... ........... ...... ....+
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~~-~rp~~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAE-WLNAEL-IVSD-WRPVKLRRGVFYQGFVTWEDGSIDRFSSW 226 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHH-HTTEEE-EECC-CCSSEEEEEEEETTEEEETTSCEEECSST
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHH-HhCCcc-cCCC-CCCCcceEEEEeCCeeeccccchhhhhHH
Confidence 98889999999999887789999999999763 33333 433211 1100 00000000000 000000 01223
Q ss_pred hHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHcc----------------------------------CCcccccCC
Q 011901 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS----------------------------------YNCEPLHGD 376 (475)
Q Consensus 331 ~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------------------------------~~~~~~h~~ 376 (475)
...+... ...++++||||++++.++.++..|.+. .++..+||+
T Consensus 227 ~~~~~~~---~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~ 303 (720)
T 2zj8_A 227 EELVYDA---IRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAG 303 (720)
T ss_dssp THHHHHH---HHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTT
T ss_pred HHHHHHH---HhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCC
Confidence 3333333 346789999999999999999888642 247889999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEE----cC----CCCChhHHHHhhhccCCCC--CCCeEEEE
Q 011901 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YE----LPNTSETFVHRTGRTGRAG--KKGSAILI 446 (475)
Q Consensus 377 ~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~----~~----~p~~~~~~~Q~~GR~gR~~--~~g~~~~~ 446 (475)
|++++|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|.||+||+||.| ..|.|+++
T Consensus 304 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 383 (720)
T 2zj8_A 304 LGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIV 383 (720)
T ss_dssp SCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999998 66 5889999999999999987 57999999
Q ss_pred ecchhHHHHHHHHHHhCCCccccc
Q 011901 447 YTDQQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 447 ~~~~~~~~~~~i~~~~~~~~~~~~ 470 (475)
+++.+.. ..+++.+....++++
T Consensus 384 ~~~~~~~--~~~~~~~~~~~~~i~ 405 (720)
T 2zj8_A 384 STSDDPR--EVMNHYIFGKPEKLF 405 (720)
T ss_dssp CSSSCHH--HHHHHHTTSCCCCCC
T ss_pred ecCccHH--HHHHHHhcCCCCCcE
Confidence 9987733 345566666665554
No 21
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.6e-46 Score=395.82 Aligned_cols=355 Identities=21% Similarity=0.339 Sum_probs=268.0
Q ss_pred CCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhh-HhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeE
Q 011901 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 176 (475)
..+|+++++++.+.+.+.+.|+.+|+|+|.++++. +..++++++++|||||||+++.++++..+.. .+.++
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~i 78 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------NGGKA 78 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------SCSEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------CCCeE
Confidence 35688999999999999999999999999999999 7889999999999999999999999988753 26789
Q ss_pred EEEcCCHHHHHHHHHHHHhhCC-CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011901 177 LVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 177 lil~Pt~~La~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H 255 (475)
++++|+++|+.|++++++.+.. +.++...+|+....... . .+++|+|+||++|..++......++++++||+||+|
T Consensus 79 l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~--~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 79 IYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAW--L-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGG--G-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhh--c-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 9999999999999999965432 56677777766543321 2 368999999999999988876668899999999999
Q ss_pred ccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCe--------eEEEEeccC
Q 011901 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI--------SLYSIATSM 327 (475)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 327 (475)
.+.+.+++..+..++.+++ +.++++||||+++. ..+.. ++..+. +.... ........+ .........
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~~~-r~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAK-WLGAEP-VATNW-RPVPLIEGVIYPERKKKEYNVIFKDN 230 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHH-HHTCEE-EECCC-CSSCEEEEEEEECSSTTEEEEEETTS
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHH-HhCCCc-cCCCC-CCCCceEEEEecCCcccceeeecCcc
Confidence 9988778888888888776 78999999999863 44443 333221 11000 000000000 000000000
Q ss_pred -----ccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHcc-----------------------------------
Q 011901 328 -----YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS----------------------------------- 367 (475)
Q Consensus 328 -----~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------------------------------- 367 (475)
.........+.+....++++||||+++++++.++..|.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 231 TTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp CEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 0012334444444557889999999999999999988642
Q ss_pred --CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEE----cC-------CCCChhHHHHhhhcc
Q 011901 368 --YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YE-------LPNTSETFVHRTGRT 434 (475)
Q Consensus 368 --~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~----~~-------~p~~~~~~~Q~~GR~ 434 (475)
.++..+||+|+.++|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|.||+||+
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 24788999999999999999999999999999999999999999999999 88 788999999999999
Q ss_pred CCCC--CCCeEEEEecchhHHHHHHHHHHhCCCcccc
Q 011901 435 GRAG--KKGSAILIYTDQQARQVKSIERDVGCRFTQV 469 (475)
Q Consensus 435 gR~~--~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (475)
||.| .+|.|++++++.+. ....+++++....+.+
T Consensus 391 GR~g~~~~G~~~~l~~~~~~-~~~~~~~~l~~~~e~~ 426 (715)
T 2va8_A 391 GRPGFDQIGESIVVVRDKED-VDRVFKKYVLSDVEPI 426 (715)
T ss_dssp CCTTTCSCEEEEEECSCGGG-HHHHHHHTTSSCCCCC
T ss_pred CCCCCCCCceEEEEeCCchH-HHHHHHHHHcCCCCCc
Confidence 9987 47999999987653 1123444554444444
No 22
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.9e-47 Score=401.50 Aligned_cols=352 Identities=22% Similarity=0.335 Sum_probs=265.2
Q ss_pred cccCCC--CCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEE
Q 011901 100 DISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (475)
Q Consensus 100 ~~~~~~--l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~l 177 (475)
+|++++ +++.+.+.+.+.|+.+|+|+|.++++.+..++++++++|||||||+++.++++..+.+ +.+++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~l 72 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKSL 72 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCcEE
Confidence 466777 8999999999999999999999999999999999999999999999999999988753 56799
Q ss_pred EEcCCHHHHHHHHHHHHhhCC-CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccc
Q 011901 178 VLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (475)
Q Consensus 178 il~Pt~~La~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~ 256 (475)
+++|+++|+.|++++++.+.. ++++..++|+...... ...+++|+|+||++|..++.+....++++++||+||+|.
T Consensus 73 ~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 73 YVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 999999999999999965443 5677777777654332 123689999999999999888766688999999999999
Q ss_pred cccCCchHHHHHHHHhC---CCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCe---eEEEEeccCc--
Q 011901 257 MLSVGFAEDVEVILERL---PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI---SLYSIATSMY-- 328 (475)
Q Consensus 257 ~~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-- 328 (475)
+.+++++..+..++..+ +++.++++||||+++ ...+.. ++..+.. .... ......... ..........
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~~-~~~~-r~~~l~~~~~~~~~~~~~~~~~~~ 225 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADYY-VSDW-RPVPLVEGVLCEGTLELFDGAFST 225 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEEE-ECCC-CSSCEEEEEECSSEEEEEETTEEE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCcc-cCCC-CCccceEEEeeCCeeeccCcchhh
Confidence 99888888887776665 578999999999986 344443 4433221 1100 000000000 0000111000
Q ss_pred -cchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHcc-------------------------------CCcccccCC
Q 011901 329 -EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-------------------------------YNCEPLHGD 376 (475)
Q Consensus 329 -~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-------------------------------~~~~~~h~~ 376 (475)
........+.+....++++||||+++++++.++..|.+. .++..+||+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 226 SRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp EEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred hhhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 111133333333457889999999999999999888642 357889999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEE----cC---CCCChhHHHHhhhccCCCC--CCCeEEEEe
Q 011901 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YE---LPNTSETFVHRTGRTGRAG--KKGSAILIY 447 (475)
Q Consensus 377 ~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~----~~---~p~~~~~~~Q~~GR~gR~~--~~g~~~~~~ 447 (475)
|++++|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|.||+||+||.| ..|.|++++
T Consensus 306 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 385 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 385 (702)
T ss_dssp SCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEe
Confidence 99999999999999999999999999999999999999998 55 6889999999999999987 579999999
Q ss_pred cchhHHHHHHHHHHhCCCcccc
Q 011901 448 TDQQARQVKSIERDVGCRFTQV 469 (475)
Q Consensus 448 ~~~~~~~~~~i~~~~~~~~~~~ 469 (475)
++.+.. ..+++++....+.+
T Consensus 386 ~~~~~~--~~~~~~l~~~~e~~ 405 (702)
T 2p6r_A 386 GKRDRE--IAVKRYIFGEPERI 405 (702)
T ss_dssp CGGGHH--HHHHTTTSSCCCCC
T ss_pred cCccHH--HHHHHHhcCCCCCc
Confidence 988733 22333444444433
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.4e-46 Score=383.61 Aligned_cols=331 Identities=20% Similarity=0.259 Sum_probs=200.1
Q ss_pred CCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
+..+|+|+|.++++.++.++++++++|||||||++|++|++..+.+.. ...+.++||++||++|+.|+++.+++++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc----ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999999999998875521 1236789999999999999999999987
Q ss_pred C--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCC-CCCCccEEEEecccccccCCchHHHH-HHHHh-
Q 011901 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAEDVE-VILER- 272 (475)
Q Consensus 198 ~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~~~~vViDE~H~~~~~~~~~~~~-~i~~~- 272 (475)
+ ++.+..++|+.........+..+++|+|+||+.|.+.+..+.+ .+.++++||+||||++.+++....+. ..+..
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~ 159 (556)
T 4a2p_A 80 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 159 (556)
T ss_dssp GGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHH
T ss_pred cccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhh
Confidence 6 6778888888866665555666789999999999999988777 78999999999999998876433321 22222
Q ss_pred C---CCCCcEEEEccCCChh-----------HHHHHHh------------------hcCCCcEEEecCCC--ccccc---
Q 011901 273 L---PQNRQSMMFSATMPPW-----------IRSLTNK------------------YLKNPLTVDLVGDS--DQKLA--- 315 (475)
Q Consensus 273 ~---~~~~~~i~~SAT~~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~--~~~~~--- 315 (475)
+ .+..++++|||||+.. +..+... +...+......... .....
T Consensus 160 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (556)
T 4a2p_A 160 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 239 (556)
T ss_dssp HCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHH
T ss_pred hcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHH
Confidence 1 3568999999999531 1111111 11122211111000 00000
Q ss_pred ----c-------C---ee-EEEE---------------------------------------------------------
Q 011901 316 ----D-------G---IS-LYSI--------------------------------------------------------- 323 (475)
Q Consensus 316 ----~-------~---~~-~~~~--------------------------------------------------------- 323 (475)
. . .. ....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (556)
T 4a2p_A 240 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 319 (556)
T ss_dssp HHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 0 00 0000
Q ss_pred -----------------------------------------------eccCccchHHHHHHHHHh---ccCCcEEEEecC
Q 011901 324 -----------------------------------------------ATSMYEKPSIIGQLITEH---AKGGKCIVFTQT 353 (475)
Q Consensus 324 -----------------------------------------------~~~~~~~~~~l~~l~~~~---~~~~~~lVf~~~ 353 (475)
......|...+..++.+. ..+.++||||++
T Consensus 320 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~ 399 (556)
T 4a2p_A 320 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 399 (556)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEcc
Confidence 000123444455555443 467899999999
Q ss_pred hhhHHHHHHHHHcc-------------CCcccccCCCCHHHHHHHHHHHhc-CCCcEEEecCccccCCCCCCCCEEEEcC
Q 011901 354 KRDADRLAHAMAKS-------------YNCEPLHGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLIIHYE 419 (475)
Q Consensus 354 ~~~~~~l~~~L~~~-------------~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vlvaT~~~~~Gidi~~~~~vi~~~ 419 (475)
+..++.+++.|.+. .....+||+|++++|..+++.|++ |+++|||||+++++|+|+|++++||+||
T Consensus 400 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d 479 (556)
T 4a2p_A 400 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 479 (556)
T ss_dssp HHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEET
T ss_pred HHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999652 234456788999999999999999 9999999999999999999999999999
Q ss_pred CCCChhHHHHhhhccCCCCCCCeEEEEecchhHHH
Q 011901 420 LPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454 (475)
Q Consensus 420 ~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~ 454 (475)
+|+|+..|+||+|| ||. ++|.|++++++.+.+.
T Consensus 480 ~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 480 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 512 (556)
T ss_dssp CCSCHHHHHHC----------CCEEEEESCHHHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHH
Confidence 99999999999999 999 7899999999877643
No 24
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-46 Score=403.66 Aligned_cols=346 Identities=20% Similarity=0.244 Sum_probs=266.4
Q ss_pred cccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEE
Q 011901 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil 179 (475)
.|..+++++.+...+...+++.|+++|.++++.+..++++++++|||||||++|.+|++..+.. +.+++|+
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---------g~rvlvl 233 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYT 233 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---------TCEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---------CCeEEEE
Confidence 3555667776666677778889999999999999999999999999999999999999988743 7789999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccc
Q 011901 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~ 259 (475)
+||++|+.|+++.+.+.+. .+..++|+.. ...+++|+|+||+.|.+++.++...+.++++||+||+|++.+
T Consensus 234 ~PtraLa~Q~~~~l~~~~~--~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG--DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS--SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS
T ss_pred cCcHHHHHHHHHHHHHHhC--CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc
Confidence 9999999999999999886 5666777765 334589999999999999988877788999999999999999
Q ss_pred CCchHHHHHHHHhCCCCCcEEEEccCCChh--HHHHHHhhcCCCcEEEecCCCccccccCeeEEEEecc---------Cc
Q 011901 260 VGFAEDVEVILERLPQNRQSMMFSATMPPW--IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS---------MY 328 (475)
Q Consensus 260 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 328 (475)
++++..+..++..+++..|+++||||+++. +..+.......+..+......... ...+..... ..
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~p----l~~~~~~~~~~~~~~~vd~~ 380 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP----LQHYLFPAHGDGIYLVVDEK 380 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSC----EEEEEEETTSSCCEEEEETT
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc----ceEEEeecCCcceeeeeccc
Confidence 889999999999999999999999998764 334555555555544332221111 111111000 00
Q ss_pred ----------------------------------------c---chHHHHHHHHHh--ccCCcEEEEecChhhHHHHHHH
Q 011901 329 ----------------------------------------E---KPSIIGQLITEH--AKGGKCIVFTQTKRDADRLAHA 363 (475)
Q Consensus 329 ----------------------------------------~---~~~~l~~l~~~~--~~~~~~lVf~~~~~~~~~l~~~ 363 (475)
. ....+..++... ..++++||||+++..++.++..
T Consensus 381 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~ 460 (1108)
T 3l9o_A 381 STFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALK 460 (1108)
T ss_dssp TEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHH
Confidence 0 022333333332 2356999999999999999988
Q ss_pred HHcc----------------------------------------CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCcc
Q 011901 364 MAKS----------------------------------------YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (475)
Q Consensus 364 L~~~----------------------------------------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 403 (475)
|... .++..+||+|++.+|+.+++.|++|.++|||||+++
T Consensus 461 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vl 540 (1108)
T 3l9o_A 461 MSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF 540 (1108)
T ss_dssp TCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHH
Confidence 7531 126789999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEcCCC--------CChhHHHHhhhccCCCC--CCCeEEEEecchhHHHHHHHHHHhCCCcccc
Q 011901 404 ARGLDVPNVDLIIHYELP--------NTSETFVHRTGRTGRAG--KKGSAILIYTDQQARQVKSIERDVGCRFTQV 469 (475)
Q Consensus 404 ~~Gidi~~~~~vi~~~~p--------~~~~~~~Q~~GR~gR~~--~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (475)
++|+|+|++++||+++.| .+..+|+||+||+||.| ..|.|++++++... ...+.+.+....+++
T Consensus 541 a~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~--~~~~~~l~~~~~~~L 614 (1108)
T 3l9o_A 541 SIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKME--PQVAKGMVKGQADRL 614 (1108)
T ss_dssp CSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCC--HHHHHHHHHCCCCCC
T ss_pred hcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcC--HHHHHHHhcCCCccc
Confidence 999999999999987664 36778999999999998 68999999887532 233444454444444
No 25
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.3e-46 Score=396.50 Aligned_cols=353 Identities=20% Similarity=0.228 Sum_probs=227.4
Q ss_pred HHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHH
Q 011901 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (475)
Q Consensus 112 ~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (475)
..+...|+.+|+++|.++++.++.|+++++++|||||||++|+++++..+.... .+.+.++++++||++|+.|+.+
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~----~~~~~~~lvl~Pt~~L~~Q~~~ 79 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----QGQKGKVVFFANQIPVYEQNKS 79 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC----TTCCCCEEEECSSHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc----cCCCCeEEEEECCHHHHHHHHH
Confidence 456678999999999999999999999999999999999999999998875521 1234689999999999999999
Q ss_pred HHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCC-CCCCccEEEEecccccccCCchH-HHH
Q 011901 192 EFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAE-DVE 267 (475)
Q Consensus 192 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~~~~vViDE~H~~~~~~~~~-~~~ 267 (475)
.++++++ ++.+..++|+.........+..+++|+|+||+.|.+.+..+.+ .+.++++||+||||++.+..... .+.
T Consensus 80 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 80 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 9999986 6778888888766555555556799999999999999988766 68899999999999988664222 222
Q ss_pred HHHHh-----CCCCCcEEEEccCCCh-------h-HHHHHHh---------------------hcCCCcEEEecCCCccc
Q 011901 268 VILER-----LPQNRQSMMFSATMPP-------W-IRSLTNK---------------------YLKNPLTVDLVGDSDQK 313 (475)
Q Consensus 268 ~i~~~-----~~~~~~~i~~SAT~~~-------~-~~~~~~~---------------------~~~~~~~~~~~~~~~~~ 313 (475)
..+.. .++.+++++|||||.. . ...+... +...|............
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccC
Confidence 22222 2467899999999971 1 1111111 11112111000000000
Q ss_pred --------------------ccc---------------------------------------------------------
Q 011901 314 --------------------LAD--------------------------------------------------------- 316 (475)
Q Consensus 314 --------------------~~~--------------------------------------------------------- 316 (475)
...
T Consensus 240 ~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence 000
Q ss_pred --------------------------------CeeEEEE----------------eccCccchHHHHHHHHHh---ccCC
Q 011901 317 --------------------------------GISLYSI----------------ATSMYEKPSIIGQLITEH---AKGG 345 (475)
Q Consensus 317 --------------------------------~~~~~~~----------------~~~~~~~~~~l~~l~~~~---~~~~ 345 (475)
.+..... ......|...+..++.+. ..++
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 399 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 399 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTC
T ss_pred hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCC
Confidence 0000000 001334556666676655 3567
Q ss_pred cEEEEecChhhHHHHHHHHHcc-----CCcccc--------cCCCCHHHHHHHHHHHhc-CCCcEEEecCccccCCCCCC
Q 011901 346 KCIVFTQTKRDADRLAHAMAKS-----YNCEPL--------HGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPN 411 (475)
Q Consensus 346 ~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~--------h~~~~~~~r~~~~~~f~~-g~~~vlvaT~~~~~Gidi~~ 411 (475)
++||||+++..++.+++.|.+. +++..+ ||+|++++|.++++.|++ |+.+|||||+++++|+|+|+
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~ 479 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 479 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CC
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCcc
Confidence 9999999999999999999764 677777 559999999999999998 99999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHH----HHHhCCCccccc
Q 011901 412 VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI----ERDVGCRFTQVT 470 (475)
Q Consensus 412 ~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i----~~~~~~~~~~~~ 470 (475)
+++||+||+|++..+|+||+|| ||. ++|.|+++++..+......+ ++.++..+++++
T Consensus 480 v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 540 (696)
T 2ykg_A 480 CNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ 540 (696)
T ss_dssp CSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 998 78999999999888666666 545555444443
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3.4e-46 Score=383.58 Aligned_cols=342 Identities=21% Similarity=0.240 Sum_probs=232.3
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC-
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~- 198 (475)
.+|+|+|.++++.++.++++++++|||||||++|++|++..+.+.. ...+.++||++||++|+.|+++.+.++++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----CGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----cCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 5799999999999999999999999999999999999998876521 12367899999999999999999999875
Q ss_pred -CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCC-CCCCccEEEEecccccccCCch-HHHHHHHHhC--
Q 011901 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFA-EDVEVILERL-- 273 (475)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~~~~vViDE~H~~~~~~~~-~~~~~i~~~~-- 273 (475)
++.+..++|+.........+..+++|+|+||++|...+..+.. .+.++++||+||||++.+.+.. ..+...+...
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 6778888888876665555666799999999999999988776 6888999999999999876422 2222333221
Q ss_pred ---CCCCcEEEEccCCChhH--------H---HHHHhhcCCCcEEEecCCCcccc----ccCeeEEEE-e----------
Q 011901 274 ---PQNRQSMMFSATMPPWI--------R---SLTNKYLKNPLTVDLVGDSDQKL----ADGISLYSI-A---------- 324 (475)
Q Consensus 274 ---~~~~~~i~~SAT~~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~---------- 324 (475)
.+.+++++|||||.... . .+... +. ...+.......... ......+.. .
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~-l~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAA-LD-ASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCI 236 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHH-TT-CSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHh-cC-CeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHH
Confidence 24578999999995421 1 11111 11 11111100000000 000000000 0
Q ss_pred --------------------------------------------------------------------------------
Q 011901 325 -------------------------------------------------------------------------------- 324 (475)
Q Consensus 325 -------------------------------------------------------------------------------- 324 (475)
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 316 (555)
T 3tbk_A 237 ISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALII 316 (555)
T ss_dssp HHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence
Q ss_pred --------------------------------------------------ccCccchHHHHHHHHHh---ccCCcEEEEe
Q 011901 325 --------------------------------------------------TSMYEKPSIIGQLITEH---AKGGKCIVFT 351 (475)
Q Consensus 325 --------------------------------------------------~~~~~~~~~l~~l~~~~---~~~~~~lVf~ 351 (475)
.....|...+..++.+. ..++++||||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~ 396 (555)
T 3tbk_A 317 SEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFV 396 (555)
T ss_dssp HHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 00123444455555443 3458999999
Q ss_pred cChhhHHHHHHHHHcc-----C--------CcccccCCCCHHHHHHHHHHHhc-CCCcEEEecCccccCCCCCCCCEEEE
Q 011901 352 QTKRDADRLAHAMAKS-----Y--------NCEPLHGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLIIH 417 (475)
Q Consensus 352 ~~~~~~~~l~~~L~~~-----~--------~~~~~h~~~~~~~r~~~~~~f~~-g~~~vlvaT~~~~~Gidi~~~~~vi~ 417 (475)
++++.++.++..|.+. + ....+||+|++++|..+++.|++ |+++|||||+++++|+|+|++++||+
T Consensus 397 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 397 KTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVIL 476 (555)
T ss_dssp SSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEE
T ss_pred CcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE
Confidence 9999999999999752 2 34455679999999999999999 99999999999999999999999999
Q ss_pred cCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHH----HHHhCCCcccc
Q 011901 418 YELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI----ERDVGCRFTQV 469 (475)
Q Consensus 418 ~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i----~~~~~~~~~~~ 469 (475)
||+|+|+..|+||+|| ||. ++|.|++++++.+......+ ++.+...++.+
T Consensus 477 ~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~ 530 (555)
T 3tbk_A 477 YEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKANMIKEKIMNESILRL 530 (555)
T ss_dssp ESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHHhhHHHHHHHHHHHhc
Confidence 9999999999999999 998 89999999999887766666 44444444433
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.3e-44 Score=384.58 Aligned_cols=332 Identities=20% Similarity=0.241 Sum_probs=207.0
Q ss_pred HcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHh
Q 011901 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 116 ~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 195 (475)
..|+..|+|+|.++++.++.++++++++|||||||++|++|++..+.+. +.+.+.++||++||++|+.|+++.+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~----~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM----PAGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC----CSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhc----cccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999887652 112367899999999999999999999
Q ss_pred hCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCC-CCCCccEEEEecccccccCCchHHH-HHHHH
Q 011901 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAEDV-EVILE 271 (475)
Q Consensus 196 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~~~~vViDE~H~~~~~~~~~~~-~~i~~ 271 (475)
+++ ++++..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++||+||||++.+.+....+ ..++.
T Consensus 319 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp HHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred hcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 876 7788888888876666666667899999999999999988776 6888999999999998876432222 22222
Q ss_pred h----CCCCCcEEEEccCCCh-----------hHHHHHHh------------------hcCCCcEEEecCCC-c-cc---
Q 011901 272 R----LPQNRQSMMFSATMPP-----------WIRSLTNK------------------YLKNPLTVDLVGDS-D-QK--- 313 (475)
Q Consensus 272 ~----~~~~~~~i~~SAT~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~-~-~~--- 313 (475)
. ..+.+++++|||||.. .+..+... ++..+......... . ..
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHH
Confidence 2 1456899999999952 11111111 11222211110000 0 00
Q ss_pred -----------cccC---------eeEEEE--------------------------------------------------
Q 011901 314 -----------LADG---------ISLYSI-------------------------------------------------- 323 (475)
Q Consensus 314 -----------~~~~---------~~~~~~-------------------------------------------------- 323 (475)
.... ......
T Consensus 479 ~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 558 (797)
T 4a2q_A 479 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (797)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000 000000
Q ss_pred -------------------------------------------------eccCccchHHHHHHHHHh---ccCCcEEEEe
Q 011901 324 -------------------------------------------------ATSMYEKPSIIGQLITEH---AKGGKCIVFT 351 (475)
Q Consensus 324 -------------------------------------------------~~~~~~~~~~l~~l~~~~---~~~~~~lVf~ 351 (475)
......|...+..++.+. ..+.++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~ 638 (797)
T 4a2q_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (797)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred hccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 000122344444455432 4568999999
Q ss_pred cChhhHHHHHHHHHc-------------cCCcccccCCCCHHHHHHHHHHHhc-CCCcEEEecCccccCCCCCCCCEEEE
Q 011901 352 QTKRDADRLAHAMAK-------------SYNCEPLHGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLIIH 417 (475)
Q Consensus 352 ~~~~~~~~l~~~L~~-------------~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vlvaT~~~~~Gidi~~~~~vi~ 417 (475)
+++..++.++..|.+ +.....+||+|++.+|..+++.|++ |+++|||||+++++|+|+|++++||+
T Consensus 639 ~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~ 718 (797)
T 4a2q_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (797)
T ss_dssp SSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEE
T ss_pred CcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE
Confidence 999999999999975 2345567899999999999999999 99999999999999999999999999
Q ss_pred cCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHH
Q 011901 418 YELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (475)
Q Consensus 418 ~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~ 453 (475)
||+|+|+..|+||+|| ||. ++|.|++++++.+.+
T Consensus 719 yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp ESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 9999999999999999 999 899999999987664
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-44 Score=381.45 Aligned_cols=325 Identities=21% Similarity=0.276 Sum_probs=251.8
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCC
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 199 (475)
++|+++|.++++.+..++++++++|||||||++|.++++..+.. +.+++|++|+++|+.|+++++.+.+.
T Consensus 85 f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---------g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp SCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---------TCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---------CCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 46999999999999999999999999999999999999887633 67899999999999999999999876
Q ss_pred CceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCcE
Q 011901 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279 (475)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~ 279 (475)
.+..++|+.... .+++|+|+||+.|.+++.++...+.++++||+||+|++.+++++..+..++..++.+.++
T Consensus 155 -~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~i 226 (1010)
T 2xgj_A 155 -DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRY 226 (1010)
T ss_dssp -CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEE
T ss_pred -CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeE
Confidence 566677776532 357999999999999988877778999999999999999998999999999999999999
Q ss_pred EEEccCCChhHH--HHHHhhcCCCcEEEecCCCccccccCeeEEEEec---------cCcc-------------------
Q 011901 280 MMFSATMPPWIR--SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT---------SMYE------------------- 329 (475)
Q Consensus 280 i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~------------------- 329 (475)
++||||+++... .........+..+....... ..+..+.... +...
T Consensus 227 l~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp----~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (1010)
T 2xgj_A 227 VFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP----TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIG 302 (1010)
T ss_dssp EEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS----SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----
T ss_pred EEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc----ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhc
Confidence 999999887432 22222233444433221111 1111111110 0000
Q ss_pred ----------------c--------hHHHHHHHHHhc--cCCcEEEEecChhhHHHHHHHHHc-c---------------
Q 011901 330 ----------------K--------PSIIGQLITEHA--KGGKCIVFTQTKRDADRLAHAMAK-S--------------- 367 (475)
Q Consensus 330 ----------------~--------~~~l~~l~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~-~--------------- 367 (475)
+ ...+..++.... .+.++||||+++..++.++..|.. +
T Consensus 303 ~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~ 382 (1010)
T 2xgj_A 303 DDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFN 382 (1010)
T ss_dssp --------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 0 122233333321 345899999999999999888754 1
Q ss_pred ------------------------CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEE----cC
Q 011901 368 ------------------------YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YE 419 (475)
Q Consensus 368 ------------------------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~----~~ 419 (475)
.++..+||+|++.+|+.+++.|++|.++|||||+++++|+|+|++++||+ ||
T Consensus 383 ~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd 462 (1010)
T 2xgj_A 383 NAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWD 462 (1010)
T ss_dssp HHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEEC
T ss_pred HHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccC
Confidence 12667899999999999999999999999999999999999999999999 99
Q ss_pred C----CCChhHHHHhhhccCCCCC--CCeEEEEecch-hHHHHHHHHHHhCCCcccc
Q 011901 420 L----PNTSETFVHRTGRTGRAGK--KGSAILIYTDQ-QARQVKSIERDVGCRFTQV 469 (475)
Q Consensus 420 ~----p~~~~~~~Q~~GR~gR~~~--~g~~~~~~~~~-~~~~~~~i~~~~~~~~~~~ 469 (475)
. |.++.+|.||+||+||.|. .|.|++++++. +...+. +.+....+++
T Consensus 463 ~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~---~l~~~~~~~l 516 (1010)
T 2xgj_A 463 GQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAK---GMVKGQADRL 516 (1010)
T ss_dssp SSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHH---HHHSCCCCCC
T ss_pred CcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHH---HHHhCCCccc
Confidence 8 8899999999999999986 59999999865 443343 3344444433
No 29
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=7e-44 Score=387.72 Aligned_cols=323 Identities=16% Similarity=0.240 Sum_probs=258.0
Q ss_pred CCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhc----CC--cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeE
Q 011901 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQ----GR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~----~~--~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 176 (475)
.++.+....+.+.....+++||+|.++++.++. ++ +++++++||||||++|+.+++..+. .+.++
T Consensus 585 ~~~~~~~~~~~~~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---------~g~~v 655 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---------NHKQV 655 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---------TTCEE
T ss_pred CCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---------hCCeE
Confidence 456778888888766555689999999999986 54 8999999999999999988887653 36799
Q ss_pred EEEcCCHHHHHHHHHHHHhhCCC--CceEEEEcCcchhHHH---HHhh-cCCcEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011901 177 LVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQM---RALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 177 lil~Pt~~La~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (475)
+|++||++|+.|+++++.+.+.+ +++..+.+........ ..+. +.++|+|+||+.+. ..+.++++++||
T Consensus 656 lvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvI 730 (1151)
T 2eyq_A 656 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLI 730 (1151)
T ss_dssp EEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEE
T ss_pred EEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEE
Confidence 99999999999999999988764 4556666655444332 2233 35999999997663 346688999999
Q ss_pred EecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccc
Q 011901 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (475)
Q Consensus 251 iDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (475)
+||+|+ ++......++.++.+.++++|||||++....+....+.+...+.. ..... ..+..+.. ...+
T Consensus 731 iDEaH~-----~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~--~~~~r--~~i~~~~~---~~~~ 798 (1151)
T 2eyq_A 731 VDEEHR-----FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT--PPARR--LAVKTFVR---EYDS 798 (1151)
T ss_dssp EESGGG-----SCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCC--CCCBC--BCEEEEEE---ECCH
T ss_pred EechHh-----cChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEec--CCCCc--cccEEEEe---cCCH
Confidence 999999 566667777777788999999999998877766665544332211 11111 11222222 2234
Q ss_pred hHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc---cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCC
Q 011901 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (475)
Q Consensus 331 ~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gi 407 (475)
......++++...+++++|||++++.++.+++.|.+ +.++..+||+|++.+|+++++.|.+|+.+|||||+++++|+
T Consensus 799 ~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~Gi 878 (1151)
T 2eyq_A 799 MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 878 (1151)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGS
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeee
Confidence 556677777787899999999999999999999976 36789999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCC-CChhHHHHhhhccCCCCCCCeEEEEecchh
Q 011901 408 DVPNVDLIIHYELP-NTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (475)
Q Consensus 408 di~~~~~vi~~~~p-~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~ 451 (475)
|+|++++||+++++ ++..+|+||+||+||.|++|+|++++.+.+
T Consensus 879 Dip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 879 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp CCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred cccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 99999999999985 599999999999999999999999998653
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=4.2e-44 Score=386.97 Aligned_cols=334 Identities=20% Similarity=0.291 Sum_probs=257.8
Q ss_pred HHHHHHH-cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHH
Q 011901 110 IVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (475)
Q Consensus 110 l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q 188 (475)
+.+.+.. .|+ +|||+|.++++.++.|+++++++|||||||++|+++++..+ ..+++++|++||++|+.|
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~---------~~~~~~Lil~PtreLa~Q 136 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---------RKGKKSALVFPTVTLVKQ 136 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH---------TTTCCEEEEESSHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH---------hcCCeEEEEechHHHHHH
Confidence 3444544 455 79999999999999999999999999999998888877766 237789999999999999
Q ss_pred HHHHHHhhC-CCCceEEEEcCcch---hHHHHHhhcC-CcEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccc----
Q 011901 189 VEKEFHESA-PSLDTICVYGGTPI---SHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS---- 259 (475)
Q Consensus 189 ~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~-~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~---- 259 (475)
+++.++++. .++++..++|+... ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||+|++..
T Consensus 137 ~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~ 214 (1104)
T 4ddu_A 137 TLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRN 214 (1104)
T ss_dssp HHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHH
T ss_pred HHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCcccccccc
Confidence 999999965 35678888898876 4445555555 99999999999887764 4577999999999986554
Q ss_pred -------CCchHH-HHHHHHhCC-----------CCCcEEEEccCC-ChhHH-HHHHhhcCCCcEEEecCCCccccccCe
Q 011901 260 -------VGFAED-VEVILERLP-----------QNRQSMMFSATM-PPWIR-SLTNKYLKNPLTVDLVGDSDQKLADGI 318 (475)
Q Consensus 260 -------~~~~~~-~~~i~~~~~-----------~~~~~i~~SAT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (475)
++|... +..+++.++ .+.|+++||||+ +..+. .+....+. +.+ .........+
T Consensus 215 ~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v--~~~~~~~~~i 288 (1104)
T 4ddu_A 215 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTV--GRLVSVARNI 288 (1104)
T ss_dssp HHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCC--CBCCCCCCCE
T ss_pred chhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEe--ccCCCCcCCc
Confidence 677777 788888776 789999999995 43332 22333322 111 1111223334
Q ss_pred eEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcc-cccCCCCHHHHHHHHHHHhcCCCcE
Q 011901 319 SLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCE-PLHGDISQSQRERTLSAFRDGRFNI 396 (475)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~-~~h~~~~~~~r~~~~~~f~~g~~~v 396 (475)
.+..... ++...+..+++. .++++||||++++.++.++..|.+ ++.+. .+||+ |++ ++.|++|+.+|
T Consensus 289 ~~~~~~~---~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~V 357 (1104)
T 4ddu_A 289 THVRISS---RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINI 357 (1104)
T ss_dssp EEEEESC---CCHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSE
T ss_pred eeEEEec---CHHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCE
Confidence 4444333 466777777776 347999999999999999999975 57887 99983 555 99999999999
Q ss_pred EEe----cCccccCCCCCC-CCEEEEcCCCC-------------------------------------------------
Q 011901 397 LIA----TDVAARGLDVPN-VDLIIHYELPN------------------------------------------------- 422 (475)
Q Consensus 397 lva----T~~~~~Gidi~~-~~~vi~~~~p~------------------------------------------------- 422 (475)
||| |+++++|+|+|+ +++||++|+|.
T Consensus 358 LVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~ 437 (1104)
T 4ddu_A 358 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEF 437 (1104)
T ss_dssp EEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHH
T ss_pred EEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 999 999999999999 99999999998
Q ss_pred -----------------------ChhHHHHhhhccCCCCC----CCeEEEEecchhHHHHHHHHHHh----CCCcccccC
Q 011901 423 -----------------------TSETFVHRTGRTGRAGK----KGSAILIYTDQQARQVKSIERDV----GCRFTQVTS 471 (475)
Q Consensus 423 -----------------------~~~~~~Q~~GR~gR~~~----~g~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~ 471 (475)
+...|+||+||+||.|. .|.++++. +|...+..|++.+ +..+.++++
T Consensus 438 ~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~~~~~~~~~~~~ 515 (1104)
T 4ddu_A 438 VEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEAE 515 (1104)
T ss_dssp HHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHTCCCEEEGGG
T ss_pred HHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhhhcccccccccc
Confidence 77899999999999654 34445544 7777788888776 566666665
Q ss_pred CCC
Q 011901 472 FSF 474 (475)
Q Consensus 472 ~~~ 474 (475)
.++
T Consensus 516 ~~~ 518 (1104)
T 4ddu_A 516 ANW 518 (1104)
T ss_dssp CCH
T ss_pred cCH
Confidence 543
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.6e-43 Score=354.38 Aligned_cols=320 Identities=23% Similarity=0.316 Sum_probs=245.9
Q ss_pred CCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC--C
Q 011901 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--P 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~--~ 198 (475)
+|+|+|.++++.++.+ ++++.+|||+|||++++++++..+.. .+.++||++|+++|+.||.+++.+++ +
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--------~~~~~liv~P~~~L~~q~~~~~~~~~~~~ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECCHHHHHHHHHHHHHHhCcc
Confidence 6999999999999998 99999999999999999998877642 35679999999999999999999997 3
Q ss_pred CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCc
Q 011901 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (475)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~ 278 (475)
...+..++|+........ ...+++|+|+||+.|...+..+.+.+.++++||+||||++.+......+...+....+..+
T Consensus 80 ~~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~ 158 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (494)
T ss_dssp GGGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred hhheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCe
Confidence 447777777766554333 3345899999999999999888788899999999999999876555555555665667889
Q ss_pred EEEEccCCChhHHH---HHHhhcCCCcEEEecCCCcccc---ccCeeEEE--Ee--------------------------
Q 011901 279 SMMFSATMPPWIRS---LTNKYLKNPLTVDLVGDSDQKL---ADGISLYS--IA-------------------------- 324 (475)
Q Consensus 279 ~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~-------------------------- 324 (475)
+++|||||...... +........... ........ ........ ..
T Consensus 159 ~l~lTaTp~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (494)
T 1wp9_A 159 VIGLTASPGSTPEKIMEVINNLGIEHIEY--RSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAET 236 (494)
T ss_dssp EEEEESCSCSSHHHHHHHHHHTTCCEEEE--CCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCcHHHHHHHHhcChheeec--cCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999844333 332222111111 00000000 00000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 011901 325 -------------------------------------------------------------------------------- 324 (475)
Q Consensus 325 -------------------------------------------------------------------------------- 324 (475)
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (494)
T 1wp9_A 237 GLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS 316 (494)
T ss_dssp TSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhh
Confidence
Q ss_pred ----------------------ccCccchHHHHHHHHHh---ccCCcEEEEecChhhHHHHHHHHHc-cCCcccccC---
Q 011901 325 ----------------------TSMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHG--- 375 (475)
Q Consensus 325 ----------------------~~~~~~~~~l~~l~~~~---~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~--- 375 (475)
.....|...+..++.+. ..++++||||++.+.++.+++.|.+ ++.+..+||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~ 396 (494)
T 1wp9_A 317 KEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQAS 396 (494)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSC
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccc
Confidence 01223445555666654 4678999999999999999999975 488899999
Q ss_pred -----CCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecch
Q 011901 376 -----DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (475)
Q Consensus 376 -----~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~ 450 (475)
+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+ |.++.++++.
T Consensus 397 ~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~ 475 (494)
T 1wp9_A 397 KENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKG 475 (494)
T ss_dssp C-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETT
T ss_pred ccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999987 9999999987
Q ss_pred hHH
Q 011901 451 QAR 453 (475)
Q Consensus 451 ~~~ 453 (475)
+.+
T Consensus 476 t~e 478 (494)
T 1wp9_A 476 TRD 478 (494)
T ss_dssp SHH
T ss_pred CHH
Confidence 654
No 32
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.9e-44 Score=378.73 Aligned_cols=325 Identities=22% Similarity=0.320 Sum_probs=224.8
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHH-HHHHHhhCC
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV-EKEFHESAP 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~-~~~~~~~~~ 198 (475)
.+|+|+|.++++.++.++++++.+|||+|||++|++|++..+...... +.+.++||++|+++|+.|+ .++++++++
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~---~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH---TCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc---CCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 479999999999999999999999999999999999999888664321 2246799999999999999 999999987
Q ss_pred C-CceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHH------HhCCCCCCCccEEEEecccccccCC-chHHHHHHH
Q 011901 199 S-LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI------KRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVIL 270 (475)
Q Consensus 199 ~-~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l------~~~~~~~~~~~~vViDE~H~~~~~~-~~~~~~~i~ 270 (475)
. +.+..++|+.........+..+++|+|+||+.|.+.+ ....+.+.++++||+||||++...+ +...+...+
T Consensus 83 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp TTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred cCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 6 8888888887766555556677999999999999888 3445677889999999999886543 222222222
Q ss_pred Hh----C---------CCCCcEEEEccCCChh-----------HHHHHHhhc------------------CCCcEEEecC
Q 011901 271 ER----L---------PQNRQSMMFSATMPPW-----------IRSLTNKYL------------------KNPLTVDLVG 308 (475)
Q Consensus 271 ~~----~---------~~~~~~i~~SAT~~~~-----------~~~~~~~~~------------------~~~~~~~~~~ 308 (475)
.. . .+.+++++|||||... +..+..... ..|.......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 21 1 1567999999999862 121211111 1111111000
Q ss_pred CCccc-c-----------------ccCeeEE-------------------------------------------------
Q 011901 309 DSDQK-L-----------------ADGISLY------------------------------------------------- 321 (475)
Q Consensus 309 ~~~~~-~-----------------~~~~~~~------------------------------------------------- 321 (475)
..... . ......+
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 0000000
Q ss_pred ---------------------------EE------------------------eccCccchHHHHHHHHHh-c--c-CCc
Q 011901 322 ---------------------------SI------------------------ATSMYEKPSIIGQLITEH-A--K-GGK 346 (475)
Q Consensus 322 ---------------------------~~------------------------~~~~~~~~~~l~~l~~~~-~--~-~~~ 346 (475)
.. ......|...+..++.+. . . +++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 00 000111222222333322 1 2 789
Q ss_pred EEEEecChhhHHHHHHHHHc-------cCCcccccCC--------CCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCC
Q 011901 347 CIVFTQTKRDADRLAHAMAK-------SYNCEPLHGD--------ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (475)
Q Consensus 347 ~lVf~~~~~~~~~l~~~L~~-------~~~~~~~h~~--------~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~ 411 (475)
+||||++++.++.+++.|.+ ++++..+||+ |++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 99999999999999999986 4889999999 99999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecc
Q 011901 412 VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449 (475)
Q Consensus 412 ~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~ 449 (475)
+++||+||+|+|+..|+||+||+||.| +.+++++..
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~ 518 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHS 518 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeC
Confidence 999999999999999999999987664 444444443
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.7e-43 Score=379.68 Aligned_cols=332 Identities=20% Similarity=0.248 Sum_probs=206.1
Q ss_pred HcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHh
Q 011901 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 116 ~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 195 (475)
-.++.+|+|+|.++++.++.|+++++++|||||||++|++|++..+.+. +.+.+.++||++||++|+.|+++++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~----~~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM----PAGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC----CSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhc----cccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 3467889999999999999999999999999999999999998776431 112367899999999999999999999
Q ss_pred hCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCC-CCCCccEEEEecccccccCCchHH-HHHHHH
Q 011901 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAED-VEVILE 271 (475)
Q Consensus 196 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~~~~vViDE~H~~~~~~~~~~-~~~i~~ 271 (475)
+++ ++++..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++||+||||++.+.+.... +..++.
T Consensus 319 ~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred HhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 876 6788888888866655555556689999999999999988776 678899999999999887643222 222222
Q ss_pred h----CCCCCcEEEEccCCCh-----------hHHHHHH------------------hhcCCCcEEEecCCCccc-----
Q 011901 272 R----LPQNRQSMMFSATMPP-----------WIRSLTN------------------KYLKNPLTVDLVGDSDQK----- 313 (475)
Q Consensus 272 ~----~~~~~~~i~~SAT~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~----- 313 (475)
. ..+..++++|||||.. .+..+.. .+...+............
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 2 1456899999999952 1111111 112222222111110000
Q ss_pred -----------cccC---------eeEEEE--------------------------------------------------
Q 011901 314 -----------LADG---------ISLYSI-------------------------------------------------- 323 (475)
Q Consensus 314 -----------~~~~---------~~~~~~-------------------------------------------------- 323 (475)
.... ......
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000 000000
Q ss_pred -------------------------------------------------eccCccchHHHHHHHHHh---ccCCcEEEEe
Q 011901 324 -------------------------------------------------ATSMYEKPSIIGQLITEH---AKGGKCIVFT 351 (475)
Q Consensus 324 -------------------------------------------------~~~~~~~~~~l~~l~~~~---~~~~~~lVf~ 351 (475)
......|...+..++.+. ..+.++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~ 638 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEE
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEe
Confidence 000122334444555543 3568999999
Q ss_pred cChhhHHHHHHHHHcc-------------CCcccccCCCCHHHHHHHHHHHhc-CCCcEEEecCccccCCCCCCCCEEEE
Q 011901 352 QTKRDADRLAHAMAKS-------------YNCEPLHGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLIIH 417 (475)
Q Consensus 352 ~~~~~~~~l~~~L~~~-------------~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vlvaT~~~~~Gidi~~~~~vi~ 417 (475)
+++..++.++..|.+. .....+||+|++.+|..+++.|++ |+++|||||+++++|+|+|++++||+
T Consensus 639 ~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp SSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 9999999999999752 334566899999999999999999 99999999999999999999999999
Q ss_pred cCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHH
Q 011901 418 YELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (475)
Q Consensus 418 ~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~ 453 (475)
||+|+|+..|+||+|| ||. ++|.|+++++..+.+
T Consensus 719 yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp ESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 9999999999999999 999 789999999987654
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.8e-44 Score=387.76 Aligned_cols=332 Identities=18% Similarity=0.305 Sum_probs=255.8
Q ss_pred HHHHHH-cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHH
Q 011901 111 VAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (475)
Q Consensus 111 ~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (475)
.+.+.+ .|+. | ++|.++++.++.|+|+++++|||||||+ |++|++..+.. .+++++|++||++|+.|+
T Consensus 47 ~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~~~~lil~PtreLa~Q~ 115 (1054)
T 1gku_B 47 VEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KGKRCYVIFPTSLLVIQA 115 (1054)
T ss_dssp HHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TSCCEEEEESCHHHHHHH
T ss_pred HHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cCCeEEEEeccHHHHHHH
Confidence 344444 6887 9 9999999999999999999999999998 88888877643 367899999999999999
Q ss_pred HHHHHhhCCC--C----ceEEEEcCcchhHH---HHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccC
Q 011901 190 EKEFHESAPS--L----DTICVYGGTPISHQ---MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (475)
Q Consensus 190 ~~~~~~~~~~--~----~~~~~~~~~~~~~~---~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~ 260 (475)
++.+++++.. + .+..++|+.....+ ...+.. ++|+|+||++|.+++.+ +.++++||+||+|++++
T Consensus 116 ~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~- 189 (1054)
T 1gku_B 116 AETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK- 189 (1054)
T ss_dssp HHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT-
T ss_pred HHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh-
Confidence 9999988754 4 56777888776653 333445 99999999999987765 67899999999999988
Q ss_pred CchHHHHHHHHhCC-----------CCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCcc
Q 011901 261 GFAEDVEVILERLP-----------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329 (475)
Q Consensus 261 ~~~~~~~~i~~~~~-----------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (475)
++..+..++..++ ...|++++|||+++. ..+...++.++..+.+ .........+.+... ...
T Consensus 190 -~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v--~~~~~~~~~i~~~~~---~~~ 262 (1054)
T 1gku_B 190 -ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDI--GSSRITVRNVEDVAV---NDE 262 (1054)
T ss_dssp -STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCC--SCCEECCCCEEEEEE---SCC
T ss_pred -ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEc--cCcccCcCCceEEEe---chh
Confidence 5788888888873 467899999999886 4333333222222211 111122233344333 245
Q ss_pred chHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHhcCCCcEEEe----cCcccc
Q 011901 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA----TDVAAR 405 (475)
Q Consensus 330 ~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlva----T~~~~~ 405 (475)
+...+..+++.. ++++||||++++.++.+++.|.+.+++..+||++ ..+++.|++|+.+|||| |+++++
T Consensus 263 k~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~r 335 (1054)
T 1gku_B 263 SISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVR 335 (1054)
T ss_dssp CTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------C
T ss_pred HHHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEe
Confidence 666677777654 5789999999999999999997668899999998 37789999999999999 899999
Q ss_pred CCCCCCC-CEEEEcCCC---------------------------------------------------------------
Q 011901 406 GLDVPNV-DLIIHYELP--------------------------------------------------------------- 421 (475)
Q Consensus 406 Gidi~~~-~~vi~~~~p--------------------------------------------------------------- 421 (475)
|+|+|+| ++||++|.|
T Consensus 336 GIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 415 (1054)
T 1gku_B 336 GLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVV 415 (1054)
T ss_dssp CSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSE
T ss_pred ccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccee
Confidence 9999996 999999999
Q ss_pred --------CChhHHHHhhhccCCCCCCC--eEEEEecchhHHHHHHHHHHhC---CCcccccCCC
Q 011901 422 --------NTSETFVHRTGRTGRAGKKG--SAILIYTDQQARQVKSIERDVG---CRFTQVTSFS 473 (475)
Q Consensus 422 --------~~~~~~~Q~~GR~gR~~~~g--~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~ 473 (475)
.+...|+||+||+||.|..| .+++++..++...+..|++.++ ..+.+++..+
T Consensus 416 ~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~ 480 (1054)
T 1gku_B 416 VREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVD 480 (1054)
T ss_dssp EETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHTTSSCCCBCSCCC
T ss_pred EeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhhccCccccCCcCC
Confidence 68999999999999977765 4777777778888888888877 4555555443
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=5.5e-42 Score=367.63 Aligned_cols=311 Identities=21% Similarity=0.248 Sum_probs=238.5
Q ss_pred CCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC
Q 011901 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 198 (475)
.++|+++|.++++.++.|+++++.+|||||||++|++++...+. .+.+++|++|+++|+.|+++.+.+.++
T Consensus 37 ~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~---------~g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR---------NMTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp SSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH---------TTCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh---------cCCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 35799999999999999999999999999999999998887653 267899999999999999999999988
Q ss_pred CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCc
Q 011901 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (475)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~ 278 (475)
++.+..++|+... ...++|+|+||+.|.+.+......+.++++||+||+|++.+++++..+..++..++++.+
T Consensus 108 ~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~ 180 (997)
T 4a4z_A 108 DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVK 180 (997)
T ss_dssp -CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCE
T ss_pred CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCC
Confidence 8888888887653 244799999999999999887777889999999999999999999999999999999999
Q ss_pred EEEEccCCChhHHHHHHhhc---CCCcEEEecCCCccccccCe----eEE------------------------------
Q 011901 279 SMMFSATMPPWIRSLTNKYL---KNPLTVDLVGDSDQKLADGI----SLY------------------------------ 321 (475)
Q Consensus 279 ~i~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~------------------------------ 321 (475)
++++|||+++.. .+...+. ..+..+.............+ ..+
T Consensus 181 iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (997)
T 4a4z_A 181 FILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAP 259 (997)
T ss_dssp EEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------
T ss_pred EEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccc
Confidence 999999997653 2332221 12221111100000000000 000
Q ss_pred -------------------------------------------------------EEeccCccchHHHHHHHHHhccCCc
Q 011901 322 -------------------------------------------------------SIATSMYEKPSIIGQLITEHAKGGK 346 (475)
Q Consensus 322 -------------------------------------------------------~~~~~~~~~~~~l~~l~~~~~~~~~ 346 (475)
........+...+...+... ...+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-~~~~ 338 (997)
T 4a4z_A 260 SKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-ELLP 338 (997)
T ss_dssp ---------------------------------------------------------CCCCTTHHHHHHHHHHHT-TCCS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-CCCC
Confidence 00000111122233333332 3469
Q ss_pred EEEEecChhhHHHHHHHHHcc----------------------------------------CCcccccCCCCHHHHHHHH
Q 011901 347 CIVFTQTKRDADRLAHAMAKS----------------------------------------YNCEPLHGDISQSQRERTL 386 (475)
Q Consensus 347 ~lVf~~~~~~~~~l~~~L~~~----------------------------------------~~~~~~h~~~~~~~r~~~~ 386 (475)
+||||++++.++.++..|.+. .++..+||+|++.+|..++
T Consensus 339 ~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~ 418 (997)
T 4a4z_A 339 MVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIE 418 (997)
T ss_dssp EEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHH
Confidence 999999999999999888541 1467899999999999999
Q ss_pred HHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCC---------ChhHHHHhhhccCCCC--CCCeEEEEec
Q 011901 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN---------TSETFVHRTGRTGRAG--KKGSAILIYT 448 (475)
Q Consensus 387 ~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~---------~~~~~~Q~~GR~gR~~--~~g~~~~~~~ 448 (475)
+.|.+|.++|||||+++++|+|+|+ ..||+++.+. +...|.||+||+||.| ..|.|++++.
T Consensus 419 ~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 419 ILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 9999999999999999999999999 6666666655 9999999999999987 5678888874
No 36
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=6e-42 Score=349.20 Aligned_cols=320 Identities=17% Similarity=0.213 Sum_probs=242.4
Q ss_pred HcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHh
Q 011901 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 116 ~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 195 (475)
..|+ .|+|+|..+++.++.|+ +.+++||+|||++|.+|++.... .+..++|++||++||.|.++++..
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---------~g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---------TGKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---------TSSCEEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---------cCCCEEEEeCCHHHHHHHHHHHHH
Confidence 4688 89999999999999998 99999999999999999985432 256799999999999999998877
Q ss_pred hCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHH-HHHHHhC------CCCCCCccEEEEecccccc-cCC----
Q 011901 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML-SVG---- 261 (475)
Q Consensus 196 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~~~~~~vViDE~H~~~-~~~---- 261 (475)
++. ++++.+++||.+...+ ....+++|+||||+.| .+++..+ .+.++.+.++|+||||+|+ +.+
T Consensus 147 l~~~lgl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 147 IFEFLGLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHHTTCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred HHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 643 7888888998875443 3345689999999999 6666543 3567899999999999987 553
Q ss_pred -----------chHHHHHHHHhCC---------CCCcEE-----------------EEccCCChhHHHHH-----HhhcC
Q 011901 262 -----------FAEDVEVILERLP---------QNRQSM-----------------MFSATMPPWIRSLT-----NKYLK 299 (475)
Q Consensus 262 -----------~~~~~~~i~~~~~---------~~~~~i-----------------~~SAT~~~~~~~~~-----~~~~~ 299 (475)
|...+..++..++ +.+|++ ++|||.+.....+. ..++.
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 5678888998887 367777 88999764332221 11221
Q ss_pred -CCcEE------EecCCCccc-----------------------------------------------------------
Q 011901 300 -NPLTV------DLVGDSDQK----------------------------------------------------------- 313 (475)
Q Consensus 300 -~~~~~------~~~~~~~~~----------------------------------------------------------- 313 (475)
+...+ .+++....+
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~ 384 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEF 384 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHH
Confidence 11111 000000000
Q ss_pred ----------cccC-----ee-EEEEeccCccchHHHHHHHHH-hccCCcEEEEecChhhHHHHHHHHHc-cCCcccccC
Q 011901 314 ----------LADG-----IS-LYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHG 375 (475)
Q Consensus 314 ----------~~~~-----~~-~~~~~~~~~~~~~~l~~l~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~ 375 (475)
++.+ .. ...+.....+|...+...+.+ +..+.++||||+|++.++.++..|.+ ++++..+||
T Consensus 385 ~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg 464 (844)
T 1tf5_A 385 RNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNA 464 (844)
T ss_dssp HHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECS
T ss_pred HHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeC
Confidence 0000 00 001223344566666666654 35677999999999999999999975 589999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCC--------CCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEe
Q 011901 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVP--------NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447 (475)
Q Consensus 376 ~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~--------~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~ 447 (475)
++.+.++..+...|+.| .|+|||++++||+||+ ++.+||+++.|.+...|.||+||+||.|.+|.+++|+
T Consensus 465 ~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~v 542 (844)
T 1tf5_A 465 KNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 542 (844)
T ss_dssp SCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred CccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEe
Confidence 99888887666666555 6999999999999999 7889999999999999999999999999999999999
Q ss_pred cchh
Q 011901 448 TDQQ 451 (475)
Q Consensus 448 ~~~~ 451 (475)
+.+|
T Consensus 543 s~eD 546 (844)
T 1tf5_A 543 SMED 546 (844)
T ss_dssp ETTS
T ss_pred cHHH
Confidence 8766
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2e-40 Score=370.23 Aligned_cols=339 Identities=18% Similarity=0.239 Sum_probs=251.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHhhhhHhc-CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHH
Q 011901 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (475)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~-~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 184 (475)
+.+...+.+...+|..++|+|.++++.++. +.|+++++|||||||++|.+|++..+.+ ..+.+++|++|+++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~-------~~~~kavyi~P~ra 983 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ-------SSEGRCVYITPMEA 983 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH-------CTTCCEEEECSCHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh-------CCCCEEEEEcChHH
Confidence 445667777778899999999999999975 5789999999999999999999999876 34567999999999
Q ss_pred HHHHHHHHHHhhCC---CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCC--CCCCccEEEEeccccccc
Q 011901 185 LAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL--NLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 185 La~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~--~~~~~~~vViDE~H~~~~ 259 (475)
|+.|.++++.+.+. +.++..++|+.....+ ...+++|+|+||+++..++.+... .++++++||+||+|.+.+
T Consensus 984 La~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 984 LAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS
T ss_pred HHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC
Confidence 99999999977543 4566666666543322 223479999999999877765432 367899999999998877
Q ss_pred CCchHHHHHHHHh-------CCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCcc---
Q 011901 260 VGFAEDVEVILER-------LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE--- 329 (475)
Q Consensus 260 ~~~~~~~~~i~~~-------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 329 (475)
. .+..+..++.+ .+++.|+|+||||+++. ..++......+............ ..+..+........
T Consensus 1061 ~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~RP--vpL~~~i~~~~~~~~~~ 1136 (1724)
T 4f92_B 1061 E-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVRP--VPLELHIQGFNISHTQT 1136 (1724)
T ss_dssp T-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGCS--SCEEEEEEEECCCSHHH
T ss_pred C-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCCC--CCeEEEEEeccCCCchh
Confidence 5 66666555443 46788999999999863 44444433332222222221111 12222222222111
Q ss_pred ----chHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-----------------------------------cCCc
Q 011901 330 ----KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----------------------------------SYNC 370 (475)
Q Consensus 330 ----~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----------------------------------~~~~ 370 (475)
....+...+.+...+++++|||+++..++.++..|.+ ..++
T Consensus 1137 ~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GI 1216 (1724)
T 4f92_B 1137 RLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGV 1216 (1724)
T ss_dssp HHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTE
T ss_pred hhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCE
Confidence 1223344566677788999999999999988776632 1356
Q ss_pred ccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEE----c------CCCCChhHHHHhhhccCCCCC-
Q 011901 371 EPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----Y------ELPNTSETFVHRTGRTGRAGK- 439 (475)
Q Consensus 371 ~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~----~------~~p~~~~~~~Q~~GR~gR~~~- 439 (475)
..+||+|++.+|+.+++.|++|.++|||||+.+++|+|+|...+||. | ..|.+..+|.||+|||||.|.
T Consensus 1217 a~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d 1296 (1724)
T 4f92_B 1217 GYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQD 1296 (1724)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTC
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCC
Confidence 78999999999999999999999999999999999999999888883 2 235689999999999999886
Q ss_pred -CCeEEEEecchhHHHHHHH
Q 011901 440 -KGSAILIYTDQQARQVKSI 458 (475)
Q Consensus 440 -~g~~~~~~~~~~~~~~~~i 458 (475)
.|.|++++.+.+...++.+
T Consensus 1297 ~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1297 DEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp SCEEEEEEEEGGGHHHHHHH
T ss_pred CceEEEEEecchHHHHHHHH
Confidence 6999999998877665443
No 38
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=8.1e-41 Score=339.46 Aligned_cols=312 Identities=14% Similarity=0.153 Sum_probs=227.3
Q ss_pred CCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh--
Q 011901 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES-- 196 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~-- 196 (475)
..+|+++|.++++.++.+++++++++||||||++++.++...+.+ .+.+++|++|+++|+.||++++.++
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~vlvl~P~~~L~~Q~~~~~~~~~~ 182 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRL 182 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--------CSSEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEECcHHHHHHHHHHHHHhhc
Confidence 347999999999999999999999999999999999888877643 1348999999999999999999988
Q ss_pred CCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCC
Q 011901 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (475)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~ 276 (475)
+++..+..+.++.....+ ...+.+|+|+||+.+... ....+.++++||+||+|++.. ..+..+++.+.+.
T Consensus 183 ~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~ 252 (510)
T 2oca_A 183 FSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNC 252 (510)
T ss_dssp SCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTC
T ss_pred CCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccC
Confidence 444567777777654443 446689999999976532 224467899999999999744 5677788888888
Q ss_pred CcEEEEccCCChhHHHHHH-hhcCCCcEEEecCCC--ccccccCeeEEE--Eec---------------------cCccc
Q 011901 277 RQSMMFSATMPPWIRSLTN-KYLKNPLTVDLVGDS--DQKLADGISLYS--IAT---------------------SMYEK 330 (475)
Q Consensus 277 ~~~i~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~---------------------~~~~~ 330 (475)
.++++|||||+........ ..+..+..+...... ............ ... ....+
T Consensus 253 ~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (510)
T 2oca_A 253 MFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKR 332 (510)
T ss_dssp CEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHH
T ss_pred cEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHH
Confidence 8999999999655322111 111122221111000 000000011110 000 00112
Q ss_pred hHHHHHHHHHh-ccCCcEEEEecChhhHHHHHHHHHcc-CCcccccCCCCHHHHHHHHHHHhcCCCcEEEec-CccccCC
Q 011901 331 PSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIAT-DVAARGL 407 (475)
Q Consensus 331 ~~~l~~l~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-~~~~~Gi 407 (475)
...+..++... ..+++.+|+|.+.+.++.+++.|.+. .++..+||+++..+|+.+++.|.+|+.+||||| +++++|+
T Consensus 333 ~~~l~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~Gi 412 (510)
T 2oca_A 333 NKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGI 412 (510)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSC
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccc
Confidence 23334444433 23444444444489999999999764 688999999999999999999999999999999 9999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEec
Q 011901 408 DVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448 (475)
Q Consensus 408 di~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~ 448 (475)
|+|++++||++++|++..+|.|++||+||.|+.+.++++++
T Consensus 413 Dip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 413 SVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999999999998875555554
No 39
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=7.3e-41 Score=336.51 Aligned_cols=295 Identities=19% Similarity=0.212 Sum_probs=219.3
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCC
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 199 (475)
.+|+|+|.++++.++.++++++++|||+|||++|+.++... +.++||+||+++|+.||.+++.++ +
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~--~ 157 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF--G 157 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG--C
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC--C
Confidence 47999999999999999999999999999999998887643 456999999999999999999994 5
Q ss_pred Cc-eEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCc
Q 011901 200 LD-TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (475)
Q Consensus 200 ~~-~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~ 278 (475)
+. +..+.|+.. ...+|+|+||+.+...+..- ..++++||+||+|++.+.++.. +++.+ +..+
T Consensus 158 ~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~ 220 (472)
T 2fwr_A 158 EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPF 220 (472)
T ss_dssp GGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSE
T ss_pred CcceEEECCCcC---------CcCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCe
Confidence 66 666665543 24799999999988766431 2468999999999998876543 44445 4678
Q ss_pred EEEEccCCChh-------------------HHHHHHhhcCCCcEEEecCCC--ccc-c---------------------c
Q 011901 279 SMMFSATMPPW-------------------IRSLTNKYLKNPLTVDLVGDS--DQK-L---------------------A 315 (475)
Q Consensus 279 ~i~~SAT~~~~-------------------~~~~~~~~~~~~~~~~~~~~~--~~~-~---------------------~ 315 (475)
++++||||... ...+...++..+....+..+. ... . .
T Consensus 221 ~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (472)
T 2fwr_A 221 RLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRA 300 (472)
T ss_dssp EEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCC
T ss_pred EEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccch
Confidence 99999999731 222222222221111110000 000 0 0
Q ss_pred cCeeEE---------------------EEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHccCCccccc
Q 011901 316 DGISLY---------------------SIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLH 374 (475)
Q Consensus 316 ~~~~~~---------------------~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~h 374 (475)
..+..+ .+......|...+..++.. ..++++||||++.+.++.+++.| .+..+|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l----~~~~~~ 375 (472)
T 2fwr_A 301 EDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVF----LIPAIT 375 (472)
T ss_dssp SSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHT----TCCBCC
T ss_pred hhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHh----Ccceee
Confidence 000000 0001122345666667766 35789999999999999999887 477899
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCC-Ce--EEEEecch
Q 011901 375 GDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKK-GS--AILIYTDQ 450 (475)
Q Consensus 375 ~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~-g~--~~~~~~~~ 450 (475)
|+++..+|+.+++.|++|+.+|||||+++++|+|+|++++||++++|+++..|.|++||+||.|+. +. ++.+++.+
T Consensus 376 g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 376 HRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp SSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999998854 34 44455543
No 40
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1e-40 Score=339.12 Aligned_cols=317 Identities=21% Similarity=0.237 Sum_probs=219.2
Q ss_pred cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.|. .|+++|..+++.++.|+ +..++||||||++|.+|++.... .+++++|++||++||.|+++++..+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l---------~g~~vlVltPTreLA~Q~~e~~~~l 138 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL---------TGKGVHVVTVNDYLAQRDAENNRPL 138 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT---------TSSCCEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH---------cCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 464 79999999999999987 99999999999999999986543 2667999999999999999998876
Q ss_pred CC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHH-HHHHHhCC------CCCCCccEEEEecccccc-cCC-----
Q 011901 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML-SVG----- 261 (475)
Q Consensus 197 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~~~~~vViDE~H~~~-~~~----- 261 (475)
+. ++++.+++||.+... +....+++|+||||+.| ++++..+. ..+++++++|+||||+|+ +.+
T Consensus 139 ~~~lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 139 FEFLGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred HHhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 53 678888899887543 33445699999999999 78877553 557899999999999998 432
Q ss_pred ----------chHHHHHHHHhCCC--------------------CCcEE------------------------EEccCCC
Q 011901 262 ----------FAEDVEVILERLPQ--------------------NRQSM------------------------MFSATMP 287 (475)
Q Consensus 262 ----------~~~~~~~i~~~~~~--------------------~~~~i------------------------~~SAT~~ 287 (475)
+...+..++..+++ .+|++ ++|||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 45667777777764 44543 7899865
Q ss_pred hhHHHHH-----HhhcC--------CCc-----------------------------EEEecCCCccccccCee------
Q 011901 288 PWIRSLT-----NKYLK--------NPL-----------------------------TVDLVGDSDQKLADGIS------ 319 (475)
Q Consensus 288 ~~~~~~~-----~~~~~--------~~~-----------------------------~~~~~~~~~~~~~~~~~------ 319 (475)
+....+. ..++. ++. .+.+.. .......+.
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~--e~~tla~It~qnyfr 374 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQN--ENQTLASITFQNYFR 374 (853)
T ss_dssp ------------------------------------------------------------CCC--CCEEEEEEEHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecc--cccccceeehHHHHh
Confidence 4222111 11110 000 000000 000000000
Q ss_pred -----------------------------------------EEEEeccCccchHHHHHHHHH-hccCCcEEEEecChhhH
Q 011901 320 -----------------------------------------LYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDA 357 (475)
Q Consensus 320 -----------------------------------------~~~~~~~~~~~~~~l~~l~~~-~~~~~~~lVf~~~~~~~ 357 (475)
...+.....+|...+...+.+ +..+.++||||+|++.+
T Consensus 375 ~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~s 454 (853)
T 2fsf_A 375 LYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKS 454 (853)
T ss_dssp TSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHH
T ss_pred hhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHH
Confidence 001223344566666666654 35678999999999999
Q ss_pred HHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCC------------------------
Q 011901 358 DRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV------------------------ 412 (475)
Q Consensus 358 ~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~------------------------ 412 (475)
+.++..|.+ ++++..+||++.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 455 e~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~ 532 (853)
T 2fsf_A 455 ELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKAD 532 (853)
T ss_dssp HHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHH
Confidence 999999975 69999999999888888888888888 599999999999999974
Q ss_pred -------------CEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchh
Q 011901 413 -------------DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (475)
Q Consensus 413 -------------~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~ 451 (475)
.+||+++.|.|...|.||+||+||.|.+|.+++|++.+|
T Consensus 533 ~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 533 WQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 599999999999999999999999999999999998766
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.4e-40 Score=369.56 Aligned_cols=333 Identities=21% Similarity=0.317 Sum_probs=243.7
Q ss_pred CCCCCcHHHHHhhhhHh-cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcC--CCCCCeEEEEcCCHHHHHHHHHHHH
Q 011901 118 GISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~-~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~--~~~~~~~lil~Pt~~La~q~~~~~~ 194 (475)
|+.+|+++|.++++.++ +++|+++++|||||||++|.++++..+.+.....+ ...+.+++|++|+++|+.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 78899999999999887 57899999999999999999999999876433221 2346789999999999999999998
Q ss_pred hhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCC--CCCCccEEEEecccccccCCchHHHHHHH
Q 011901 195 ESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL--NLSEVQFVVLDEADQMLSVGFAEDVEVIL 270 (475)
Q Consensus 195 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~--~~~~~~~vViDE~H~~~~~~~~~~~~~i~ 270 (475)
+.+. ++++..++|+.....+. ..+++|+||||+++..++..... .++++++||+||+|.+.+ ..+..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8765 45667778876544321 24589999999998666554322 267899999999997765 4777776655
Q ss_pred Hh-------CCCCCcEEEEccCCChhHHHHHHhhcCC-Cc-EEEecCCCccccccCeeEEEEeccCccch-------HHH
Q 011901 271 ER-------LPQNRQSMMFSATMPPWIRSLTNKYLKN-PL-TVDLVGDSDQKLADGISLYSIATSMYEKP-------SII 334 (475)
Q Consensus 271 ~~-------~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l 334 (475)
.+ .++..|+|+||||+++. ..++. |+.. +. ......... + +..+....+........ ..+
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~-wL~~~~~~~~~~~~~~~-R-PvpL~~~~~~~~~~~~~~~~~~~~~~~ 307 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPNY-EDVAT-FLRVDPAKGLFYFDNSF-R-PVPLEQTYVGITEKKAIKRFQIMNEIV 307 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTTH-HHHHH-HTTCCHHHHEEECCGGG-C-SSCEEEECCEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCCH-HHHHH-HhCCCCCCCeEEECCCC-c-cCccEEEEeccCCcchhhhhHHHHHHH
Confidence 43 46788999999999863 34443 3332 11 111111111 1 11222222222221111 122
Q ss_pred HHHHHHhccCCcEEEEecChhhHHHHHHHHHc--------------------------------------cCCcccccCC
Q 011901 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK--------------------------------------SYNCEPLHGD 376 (475)
Q Consensus 335 ~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~--------------------------------------~~~~~~~h~~ 376 (475)
...+.+...++++||||++++.++.++..|.+ ..++..+||+
T Consensus 308 ~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHag 387 (1724)
T 4f92_B 308 YEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAG 387 (1724)
T ss_dssp HHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSS
T ss_pred HHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCC
Confidence 23333445578999999999999988887743 1246678999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEE----cCC------CCChhHHHHhhhccCCCC--CCCeEE
Q 011901 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YEL------PNTSETFVHRTGRTGRAG--KKGSAI 444 (475)
Q Consensus 377 ~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~----~~~------p~~~~~~~Q~~GR~gR~~--~~g~~~ 444 (475)
|+.++|..+++.|++|.++|||||+.++.|||+|..++||. |++ |.+..+|.||+|||||.| ..|.++
T Consensus 388 L~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~i 467 (1724)
T 4f92_B 388 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGI 467 (1724)
T ss_dssp SCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEE
Confidence 99999999999999999999999999999999999999885 433 458999999999999976 469999
Q ss_pred EEecchhHHHHHHH
Q 011901 445 LIYTDQQARQVKSI 458 (475)
Q Consensus 445 ~~~~~~~~~~~~~i 458 (475)
++.++++...+..+
T Consensus 468 i~~~~~~~~~~~~l 481 (1724)
T 4f92_B 468 LITSHGELQYYLSL 481 (1724)
T ss_dssp EEEESTTCCHHHHH
T ss_pred EEecchhHHHHHHH
Confidence 99988776655443
No 42
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.7e-42 Score=342.63 Aligned_cols=277 Identities=19% Similarity=0.237 Sum_probs=192.8
Q ss_pred hHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcch
Q 011901 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPI 211 (475)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~ 211 (475)
.+++|+++++++|||||||++|++|++..+.+ .+++++|++||++||.|+++.+..+ .+....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~----~v~~~~~~~~- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGL----DVKFHTQAFS- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS----CEEEESSCCC-
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcC----CeEEecccce-
Confidence 46788999999999999999999999987754 2578999999999999999998754 2221111100
Q ss_pred hHHHHHhhcCCcEEEEccHHH---------HHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhC-CCCCcEEE
Q 011901 212 SHQMRALDYGVDAVVGTPGRV---------IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMM 281 (475)
Q Consensus 212 ~~~~~~~~~~~~Ilv~T~~~l---------~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~-~~~~~~i~ 281 (475)
.++||+.+ ...+. ....+.++++||+||+|++ +.++...+..+.... +.++|+++
T Consensus 71 -------------~v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 71 -------------AHGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp -------------CCCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred -------------eccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEE
Confidence 24455433 22222 2345889999999999998 322333323222222 35789999
Q ss_pred EccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHH
Q 011901 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA 361 (475)
Q Consensus 282 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~ 361 (475)
||||+++.+..+... ..+. ...............+..+.+ .++++||||++++.++.++
T Consensus 136 ~SAT~~~~~~~~~~~--~~~~----------------~~~~~~~~~~~~~~~~~~l~~---~~~~~lVF~~s~~~a~~l~ 194 (440)
T 1yks_A 136 MTATPPGTSDEFPHS--NGEI----------------EDVQTDIPSEPWNTGHDWILA---DKRPTAWFLPSIRAANVMA 194 (440)
T ss_dssp ECSSCTTCCCSSCCC--SSCE----------------EEEECCCCSSCCSSSCHHHHH---CCSCEEEECSCHHHHHHHH
T ss_pred EeCCCCchhhhhhhc--CCCe----------------eEeeeccChHHHHHHHHHHHh---cCCCEEEEeCCHHHHHHHH
Confidence 999998753322111 0011 111111111122222333333 4679999999999999999
Q ss_pred HHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEE-------------------cCCC
Q 011901 362 HAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH-------------------YELP 421 (475)
Q Consensus 362 ~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~-------------------~~~p 421 (475)
+.|.+ ++++..+|| ++|+.+++.|++|+.+|||||+++++|+|+| +++||+ ++.|
T Consensus 195 ~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p 269 (440)
T 1yks_A 195 ASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLR 269 (440)
T ss_dssp HHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEE
T ss_pred HHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccc
Confidence 99975 478999999 3688999999999999999999999999999 999996 8889
Q ss_pred CChhHHHHhhhccCCC-CCCCeEEEEe---cchhHHHHHHHHHHh
Q 011901 422 NTSETFVHRTGRTGRA-GKKGSAILIY---TDQQARQVKSIERDV 462 (475)
Q Consensus 422 ~~~~~~~Q~~GR~gR~-~~~g~~~~~~---~~~~~~~~~~i~~~~ 462 (475)
.+.++|+||+||+||. |++|.|++++ ++.+...+..+++.+
T Consensus 270 ~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 270 ISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred cCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 9999999999999996 7899999997 677777777777765
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.5e-41 Score=345.64 Aligned_cols=313 Identities=16% Similarity=0.176 Sum_probs=230.0
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCH
Q 011901 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 104 ~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
+++++.+.+++... ...++|+|+.+++.++++++++++++||||||++|++|++..+.. .+.+++|++||+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vLvl~Ptr 225 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTLILAPTR 225 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEcChH
Confidence 45666655555443 366888988889999999999999999999999999999988765 257899999999
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCch
Q 011901 184 ELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (475)
Q Consensus 184 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~ 263 (475)
+||.|+++.+... .+. +.+.... .....+..+.++|.+.+...+... ..+.++++||+||||++ +.++.
T Consensus 226 eLa~Qi~~~l~~~----~v~--~~~~~l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~ 294 (618)
T 2whx_A 226 VVAAEMEEALRGL----PIR--YQTPAVK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSV 294 (618)
T ss_dssp HHHHHHHHHTTTS----CEE--ECCTTSS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHH
T ss_pred HHHHHHHHHhcCC----cee--Eecccce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHH
Confidence 9999999888632 222 1111100 011233567788888887766554 34889999999999998 55566
Q ss_pred HHHHHHHHhCC-CCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhc
Q 011901 264 EDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342 (475)
Q Consensus 264 ~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 342 (475)
..+..++..++ ++.|+++||||+++....+.. .++..+.+.... ........+..+.+
T Consensus 295 ~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~---------------~~~~~~~ll~~l~~--- 353 (618)
T 2whx_A 295 AARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI---------------PERSWNTGFDWITD--- 353 (618)
T ss_dssp HHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC---------------CSSCCSSSCHHHHH---
T ss_pred HHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC---------------CHHHHHHHHHHHHh---
Confidence 77777777764 678999999999875332211 122222221110 00111122233332
Q ss_pred cCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEE------
Q 011901 343 KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLI------ 415 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~v------ 415 (475)
.++++||||++++.++.+++.|.+ ++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 367999999999999999999975 4788999985 688899999999999999999999999997 9988
Q ss_pred --------------EEcCCCCChhHHHHhhhccCCCCC-CCeEEEEec---chhHHHHHHHHHHh
Q 011901 416 --------------IHYELPNTSETFVHRTGRTGRAGK-KGSAILIYT---DQQARQVKSIERDV 462 (475)
Q Consensus 416 --------------i~~~~p~~~~~~~Q~~GR~gR~~~-~g~~~~~~~---~~~~~~~~~i~~~~ 462 (475)
|+++.|.+.++|+||+||+||.|. +|.|+++++ +++...+..+++.+
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 677779999999999999999864 899999998 77777777777765
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1e-39 Score=324.43 Aligned_cols=286 Identities=18% Similarity=0.193 Sum_probs=210.2
Q ss_pred CCCCCcHHHHHhhhhHhcCCcE-EEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 118 GISKLFPIQKAVLEPAMQGRDM-IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~-li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
|+.+++|+|+ +++.+++++++ ++++|||||||++|++|++..+.. .+.+++|++||++|+.|+++.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALRG- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTT-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhcC-
Confidence 5678999985 89999998886 999999999999999999887654 257899999999999999998853
Q ss_pred CCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHH-hCCC
Q 011901 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-RLPQ 275 (475)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~-~~~~ 275 (475)
..+. +....... ....+..|.++|++.+.+.+... ..+.++++||+||+|++ +..+......+.. ...+
T Consensus 71 ---~~v~--~~~~~~~~---~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~ 140 (451)
T 2jlq_A 71 ---LPIR--YQTPAVKS---DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMG 140 (451)
T ss_dssp ---SCEE--ECCTTCSC---CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTT
T ss_pred ---ceee--eeeccccc---cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCC
Confidence 2222 11111100 12234679999999998877654 45889999999999987 3222222222222 2345
Q ss_pred CCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChh
Q 011901 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKR 355 (475)
Q Consensus 276 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~ 355 (475)
+.|+++||||+++.... .+...+..+...... .. .....+...+.+ .++++||||++++
T Consensus 141 ~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~----p~------------~~~~~~~~~l~~--~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 141 EAAAIFMTATPPGSTDP---FPQSNSPIEDIEREI----PE------------RSWNTGFDWITD--YQGKTVWFVPSIK 199 (451)
T ss_dssp SCEEEEECSSCTTCCCS---SCCCSSCEEEEECCC----CS------------SCCSSSCHHHHH--CCSCEEEECSSHH
T ss_pred CceEEEEccCCCccchh---hhcCCCceEecCccC----Cc------------hhhHHHHHHHHh--CCCCEEEEcCCHH
Confidence 78999999999874322 122223322221000 00 000001122222 3569999999999
Q ss_pred hHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcC---------------
Q 011901 356 DADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYE--------------- 419 (475)
Q Consensus 356 ~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~--------------- 419 (475)
.++.+++.|.+ ++.+..+||++. +.+++.|++|+.+|||||+++++|+|+|+ ++||++|
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 99999999975 478889999864 57899999999999999999999999999 9999998
Q ss_pred -----CCCChhHHHHhhhccCCCCC-CCeEEEEecc
Q 011901 420 -----LPNTSETFVHRTGRTGRAGK-KGSAILIYTD 449 (475)
Q Consensus 420 -----~p~~~~~~~Q~~GR~gR~~~-~g~~~~~~~~ 449 (475)
.|.+..+|+||+||+||.|+ +|.|++++..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 89999999999999999998 8899888754
No 45
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=6.1e-39 Score=326.36 Aligned_cols=332 Identities=17% Similarity=0.229 Sum_probs=249.2
Q ss_pred cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.|+ .|+++|..+++.++.|+ +.+++||+|||++|.+|++...+. +..++|++||++||.|.++++..+
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 577 79999999999999987 999999999999999999754432 567999999999999999988776
Q ss_pred CC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHH-HHHHHhC------CCCCCCccEEEEecccccc-cC------
Q 011901 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML-SV------ 260 (475)
Q Consensus 197 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~~~~~~vViDE~H~~~-~~------ 260 (475)
+. ++++.+++||.+...+ ....+++|++|||+.| ++++..+ ...++.+.++|+||+|+|+ +.
T Consensus 176 ~~~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 53 6788888898875433 3345689999999999 7777654 3567889999999999998 32
Q ss_pred ---------CchHHHHHHHHhCC---------CCCcEE-----------------EEccCCChhHHHHH-----HhhcC-
Q 011901 261 ---------GFAEDVEVILERLP---------QNRQSM-----------------MFSATMPPWIRSLT-----NKYLK- 299 (475)
Q Consensus 261 ---------~~~~~~~~i~~~~~---------~~~~~i-----------------~~SAT~~~~~~~~~-----~~~~~- 299 (475)
+|...+..++..++ +.+|++ ++|||.++....+. ..++.
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 36788999999997 678888 88999875433321 11221
Q ss_pred CCcE------EEecCCCcccccc----------------------------Cee--------------------------
Q 011901 300 NPLT------VDLVGDSDQKLAD----------------------------GIS-------------------------- 319 (475)
Q Consensus 300 ~~~~------~~~~~~~~~~~~~----------------------------~~~-------------------------- 319 (475)
+... +.++.....++.. .+.
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 1111 1111110000000 000
Q ss_pred ------E---------------EEEeccCccchHHHHHHHHH-hccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCC
Q 011901 320 ------L---------------YSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGD 376 (475)
Q Consensus 320 ------~---------------~~~~~~~~~~~~~l~~l~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~ 376 (475)
. ..+.....+|...+...+.+ +..+.++||||.+++.++.++..|.+ ++++..+||+
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak 493 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK 493 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS
T ss_pred HHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 0 01112333455555555544 45677999999999999999999975 6999999999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCC--------------------------------------------
Q 011901 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV-------------------------------------------- 412 (475)
Q Consensus 377 ~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~-------------------------------------------- 412 (475)
+...++..+.+.|+.| .|+|||++++||+||+..
T Consensus 494 ~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 571 (922)
T ss_dssp CHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 8877777777888877 599999999999999975
Q ss_pred --------CEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhH-------HHHHHHHHHhCC
Q 011901 413 --------DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA-------RQVKSIERDVGC 464 (475)
Q Consensus 413 --------~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~-------~~~~~i~~~~~~ 464 (475)
.+||+++.|.|...|.||+||+||.|.+|.+++|++.+|. +.+..+...++.
T Consensus 572 ~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~~~~~~~~~~~~~~ 638 (922)
T 1nkt_A 572 KEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGAALETLLTRLNL 638 (922)
T ss_dssp HHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTTHHHHHHHHHHTTC
T ss_pred hHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhhhHHHHHHHHHhCC
Confidence 4999999999999999999999999999999999987664 234455555554
No 46
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=6e-40 Score=337.33 Aligned_cols=297 Identities=17% Similarity=0.210 Sum_probs=210.2
Q ss_pred CCcHHHH-----HhhhhHh------cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHH
Q 011901 121 KLFPIQK-----AVLEPAM------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (475)
Q Consensus 121 ~l~~~Q~-----~~i~~i~------~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (475)
.|+++|+ ++++.++ .++++++++|||||||++|++|++..+.. .+++++|++||++||.|+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~lilaPTr~La~Q~ 286 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRTAVLAPTRVVAAEM 286 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEccHHHHHHHH
Confidence 7999999 9999888 89999999999999999999999988654 367899999999999999
Q ss_pred HHHHHhhCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHH
Q 011901 190 EKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (475)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i 269 (475)
++.+..+. +....+... .....+.-+-+.+.+.+.+.+... ..+.++++||+||+|++ +..+...+..+
T Consensus 287 ~~~l~~~~----i~~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~~~~l 355 (673)
T 2wv9_A 287 AEALRGLP----VRYLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAARGYI 355 (673)
T ss_dssp HHHTTTSC----CEECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHHHHHH
T ss_pred HHHHhcCC----eeeeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHHHHHH
Confidence 99987652 111111000 001112234455556665555443 46889999999999997 21122233333
Q ss_pred HHhC-CCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEE
Q 011901 270 LERL-PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCI 348 (475)
Q Consensus 270 ~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 348 (475)
...+ +..+|+++||||+++.+..+... ..+ ...+ ............+..+.+ .++++|
T Consensus 356 ~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~-i~~v---------------~~~~~~~~~~~~l~~l~~---~~~~~l 414 (673)
T 2wv9_A 356 ATRVEAGEAAAIFMTATPPGTSDPFPDT--NSP-VHDV---------------SSEIPDRAWSSGFEWITD---YAGKTV 414 (673)
T ss_dssp HHHHHTTSCEEEEECSSCTTCCCSSCCC--SSC-EEEE---------------ECCCCSSCCSSCCHHHHS---CCSCEE
T ss_pred HHhccccCCcEEEEcCCCChhhhhhccc--CCc-eEEE---------------eeecCHHHHHHHHHHHHh---CCCCEE
Confidence 3333 26789999999998753221110 011 1111 000111111222223322 578999
Q ss_pred EEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEE----------
Q 011901 349 VFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH---------- 417 (475)
Q Consensus 349 Vf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~---------- 417 (475)
|||++++.++.+++.|.+ ++.+..+||+ +|+.+++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 415 VF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi 489 (673)
T 2wv9_A 415 WFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTIL 489 (673)
T ss_dssp EECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEE
T ss_pred EEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceee
Confidence 999999999999999975 4789999994 789999999999999999999999999999 999998
Q ss_pred ----------cCCCCChhHHHHhhhccCCC-CCCCeEEEEe---cchhHHHHHHHHHHh
Q 011901 418 ----------YELPNTSETFVHRTGRTGRA-GKKGSAILIY---TDQQARQVKSIERDV 462 (475)
Q Consensus 418 ----------~~~p~~~~~~~Q~~GR~gR~-~~~g~~~~~~---~~~~~~~~~~i~~~~ 462 (475)
++.|.+.++|+||+||+||. |++|.|++++ ++.+...+..++..+
T Consensus 490 ~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 490 DEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp CSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred ecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 56889999999999999998 7899999996 566665566665544
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=6.2e-39 Score=335.97 Aligned_cols=334 Identities=18% Similarity=0.246 Sum_probs=241.3
Q ss_pred CCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhc-CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeE
Q 011901 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~-~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 176 (475)
...|+++++++.+.+.+...+ ..|++.|+++++.++. +++++++||||||||+ ++|++..... .. .+.+.++
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~--~~--~~~g~~i 143 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE--MP--HLENTQV 143 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH--CG--GGGTCEE
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc--cc--cCCCceE
Confidence 345788999999999999988 5699999999988775 4679999999999998 5665522111 11 1125679
Q ss_pred EEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccc
Q 011901 177 LVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (475)
Q Consensus 177 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~ 256 (475)
++++|+++|+.|+++.+.+... ..+....|...... .....+.+|+++||+.+.+.+.... .+.++++||+||+|.
T Consensus 144 lvl~P~r~La~q~~~~l~~~~~-~~v~~~vG~~i~~~--~~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 144 ACTQPRRVAAMSVAQRVAEEMD-VKLGEEVGYSIRFE--NKTSNKTILKYMTDGMLLREAMEDH-DLSRYSCIILDEAHE 219 (773)
T ss_dssp EEEESCHHHHHHHHHHHHHHTT-CCBTTTEEEEETTE--EECCTTCSEEEEEHHHHHHHHHHST-TCTTEEEEEECSGGG
T ss_pred EecCchHHHHHHHHHHHHHHhC-Cchhheecceeccc--cccCCCCCEEEECHHHHHHHHhhCc-cccCCCEEEecCccc
Confidence 9999999999999998876542 22211112110000 0112457999999999998776653 488999999999995
Q ss_pred -cccCCch-HHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccch-HH
Q 011901 257 -MLSVGFA-EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP-SI 333 (475)
Q Consensus 257 -~~~~~~~-~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 333 (475)
.++..+. ..+..+... .++.++++||||++. ..+. .++.....+.+.+.. ..+..++......+.. ..
T Consensus 220 R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~--~~l~-~~~~~~~vi~v~gr~-----~pv~~~~~~~~~~~~~~~~ 290 (773)
T 2xau_A 220 RTLATDILMGLLKQVVKR-RPDLKIIIMSATLDA--EKFQ-RYFNDAPLLAVPGRT-----YPVELYYTPEFQRDYLDSA 290 (773)
T ss_dssp CCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCC--HHHH-HHTTSCCEEECCCCC-----CCEEEECCSSCCSCHHHHH
T ss_pred cccchHHHHHHHHHHHHh-CCCceEEEEeccccH--HHHH-HHhcCCCcccccCcc-----cceEEEEecCCchhHHHHH
Confidence 5443222 223333333 357899999999965 3343 344444444432221 1233333332222222 22
Q ss_pred HHHHHHHh--ccCCcEEEEecChhhHHHHHHHHHc------------cCCcccccCCCCHHHHHHHHHHHh-----cCCC
Q 011901 334 IGQLITEH--AKGGKCIVFTQTKRDADRLAHAMAK------------SYNCEPLHGDISQSQRERTLSAFR-----DGRF 394 (475)
Q Consensus 334 l~~l~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~------------~~~~~~~h~~~~~~~r~~~~~~f~-----~g~~ 394 (475)
+..+++.. ..++++||||+++++++.+++.|.+ ++.+..+||+|++++|.++++.|. +|..
T Consensus 291 l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~ 370 (773)
T 2xau_A 291 IRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGR 370 (773)
T ss_dssp HHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCE
T ss_pred HHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCce
Confidence 33333322 2478999999999999999999863 456889999999999999999999 9999
Q ss_pred cEEEecCccccCCCCCCCCEEEEcCC------------------CCChhHHHHhhhccCCCCCCCeEEEEecchhH
Q 011901 395 NILIATDVAARGLDVPNVDLIIHYEL------------------PNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (475)
Q Consensus 395 ~vlvaT~~~~~Gidi~~~~~vi~~~~------------------p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~ 452 (475)
+|||||+++++|+|+|++++||+++. |.+.++|.||+||+||. .+|.|+.++++.+.
T Consensus 371 kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 371 KVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999999999999999999999887 88999999999999999 79999999998765
No 48
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=6.5e-40 Score=331.77 Aligned_cols=290 Identities=18% Similarity=0.238 Sum_probs=216.6
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCC
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 199 (475)
..++++|+++++.+..+++++++++||||||.+|.++++.. +.+++|++||++||.|+++.+.+.+ +
T Consensus 216 lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------------g~~vLVl~PTReLA~Qia~~l~~~~-g 282 (666)
T 3o8b_A 216 SPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------------GYKVLVLNPSVAATLGFGAYMSKAH-G 282 (666)
T ss_dssp SCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------------TCCEEEEESCHHHHHHHHHHHHHHH-S
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------------CCeEEEEcchHHHHHHHHHHHHHHh-C
Confidence 34667787777788888999999999999999998887742 5679999999999999999887765 3
Q ss_pred CceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCc-
Q 011901 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ- 278 (475)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~- 278 (475)
..+....|+.. ...+.+|+|+||++| +.+..+.++++++||+||+|.+ +.++...+..+++.++...+
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGAR 351 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCS
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCc
Confidence 44555566543 356689999999997 4566677889999999999754 44577778889999887766
Q ss_pred -EEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhH
Q 011901 279 -SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDA 357 (475)
Q Consensus 279 -~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~ 357 (475)
+++||||+++.+. ...+....+.... ....... ..+.. + ....++++||||++++.+
T Consensus 352 llil~SAT~~~~i~------~~~p~i~~v~~~~----~~~i~~~------~~~~~-----l-~~~~~~~vLVFv~Tr~~a 409 (666)
T 3o8b_A 352 LVVLATATPPGSVT------VPHPNIEEVALSN----TGEIPFY------GKAIP-----I-EAIRGGRHLIFCHSKKKC 409 (666)
T ss_dssp EEEEEESSCTTCCC------CCCTTEEEEECBS----CSSEEET------TEEEC-----G-GGSSSSEEEEECSCHHHH
T ss_pred eEEEECCCCCcccc------cCCcceEEEeecc----cchhHHH------Hhhhh-----h-hhccCCcEEEEeCCHHHH
Confidence 6888999987311 1122221110000 0001000 00000 0 122578999999999999
Q ss_pred HHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEE----------EcC-------
Q 011901 358 DRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLII----------HYE------- 419 (475)
Q Consensus 358 ~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi----------~~~------- 419 (475)
+.+++.|.+ ++.+..+||+|++++ |.++..+|||||+++++|+|+| +++|| +||
T Consensus 410 e~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl 481 (666)
T 3o8b_A 410 DELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTI 481 (666)
T ss_dssp HHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEE
T ss_pred HHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccc
Confidence 999999975 588999999999875 4566679999999999999997 99988 566
Q ss_pred ----CCCChhHHHHhhhccCCCCCCCeEEEEecchhHHH--H--HHHHHHhCCC
Q 011901 420 ----LPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ--V--KSIERDVGCR 465 (475)
Q Consensus 420 ----~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~--~--~~i~~~~~~~ 465 (475)
.|.+.++|+||+||+|| |++|. +.++++.+... + ..|++..+..
T Consensus 482 ~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~ 533 (666)
T 3o8b_A 482 ETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAG 533 (666)
T ss_dssp EEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHH
T ss_pred ccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCC
Confidence 89999999999999999 88999 99998866544 2 4555544433
No 49
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=4.7e-38 Score=324.30 Aligned_cols=305 Identities=18% Similarity=0.198 Sum_probs=189.5
Q ss_pred CCcHHHHHhhhhHhc----C-CcEEEEcCCCCchhHHHHHHHHHHHHhhh-hhcCCCCCCeEEEEcCCHHHHHHHH-HHH
Q 011901 121 KLFPIQKAVLEPAMQ----G-RDMIGRARTGTGKTLAFGIPILDKIIKFN-EKHGRGRNPLCLVLAPTRELAKQVE-KEF 193 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~----~-~~~li~~~tGsGKT~~~~~~~l~~l~~~~-~~~~~~~~~~~lil~Pt~~La~q~~-~~~ 193 (475)
.|+++|.++++.++. + ++++++++||||||++++..+ ..+.... ...+...+.++||++||++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~-~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQIS-WKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHH-HHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999999875 4 568999999999999875444 4443321 0011124678999999999999999 777
Q ss_pred HhhCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHh----CCCCCCCccEEEEecccccccCCchHHHHHH
Q 011901 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR----NALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (475)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~----~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i 269 (475)
+.+.. ....+.++ ....+.+|+|+||+.|...... ..+....+++||+||||++... ....+..+
T Consensus 257 ~~~~~--~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~-~~~~~~~i 325 (590)
T 3h1t_A 257 TPFGD--ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSAR-DNSNWREI 325 (590)
T ss_dssp TTTCS--SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHH
T ss_pred Hhcch--hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccccc-chHHHHHH
Confidence 76643 22222221 2345689999999999887642 2345677999999999998764 23556777
Q ss_pred HHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCC-CccccccCeeEEEEecc----------------------
Q 011901 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD-SDQKLADGISLYSIATS---------------------- 326 (475)
Q Consensus 270 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------------------- 326 (475)
+..++ ..++++|||||..........+++.+........ .............+...
T Consensus 326 l~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (590)
T 3h1t_A 326 LEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPD 404 (590)
T ss_dssp HHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-------------------
T ss_pred HHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccccc
Confidence 77775 4779999999975443333333333322210000 00000000001100000
Q ss_pred ----Cc---------cchH----HHHHHHHHhccCCcEEEEecChhhHHHHHHHHHccC---------CcccccCCCCHH
Q 011901 327 ----MY---------EKPS----IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSY---------NCEPLHGDISQS 380 (475)
Q Consensus 327 ----~~---------~~~~----~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---------~~~~~h~~~~~~ 380 (475)
.. .+.. .+...++....++++||||++++.++.+++.|.+.. .+..+||+++ +
T Consensus 405 ~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~ 483 (590)
T 3h1t_A 405 GEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-K 483 (590)
T ss_dssp ----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-H
T ss_pred ccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-H
Confidence 00 0111 122234444556899999999999999999996532 2567899875 4
Q ss_pred HHHHHHHHHhcCCCc---EEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCC
Q 011901 381 QRERTLSAFRDGRFN---ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGK 439 (475)
Q Consensus 381 ~r~~~~~~f~~g~~~---vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~ 439 (475)
+|+.+++.|++|+.+ |+|||+++++|+|+|++++||++++|++...|.|++||+||.+.
T Consensus 484 ~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 484 IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 799999999998766 88899999999999999999999999999999999999999764
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=5.9e-38 Score=309.62 Aligned_cols=269 Identities=16% Similarity=0.201 Sum_probs=188.9
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHH
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (475)
+++++++++|||||||++|++|++..+.. .+.+++|++||++|+.|+++.+. +..+....++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--------~g~~~lvl~Pt~~La~Q~~~~~~----~~~v~~~~~~~~~--- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--------KRLRTVILAPTRVVASEMYEALR----GEPIRYMTPAVQS--- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTT----TSCEEEC---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhC----CCeEEEEecCccc---
Confidence 36789999999999999999999966644 36789999999999999998875 3444443333221
Q ss_pred HHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhC-CCCCcEEEEccCCChhHHHH
Q 011901 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSL 293 (475)
Q Consensus 215 ~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~ 293 (475)
.-..+.-+.+.|.+.+.+.+.. ...+.++++||+||+|++ +..+......+.... +.++|+++||||+++.+..+
T Consensus 66 --~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~ 141 (431)
T 2v6i_A 66 --ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAF 141 (431)
T ss_dssp -----CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSS
T ss_pred --cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhh
Confidence 1122356777888888776666 456889999999999996 322333333333332 56799999999998742211
Q ss_pred HHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCccc
Q 011901 294 TNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEP 372 (475)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~ 372 (475)
... ..+. ... ........... +..++.+ .++++||||++++.++.+++.|.+ ++.+..
T Consensus 142 ~~~--~~~i-~~~---------------~~~~~~~~~~~-~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 142 PPS--NSPI-IDE---------------ETRIPDKAWNS-GYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp CCC--SSCC-EEE---------------ECCCCSSCCSS-CCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cCC--CCce-eec---------------cccCCHHHHHH-HHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 100 0111 000 00011111111 1223333 356999999999999999999975 478999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCE-----------------EEEcCCCCChhHHHHhhhccC
Q 011901 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL-----------------IIHYELPNTSETFVHRTGRTG 435 (475)
Q Consensus 373 ~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~-----------------vi~~~~p~~~~~~~Q~~GR~g 435 (475)
+||+ +|+++++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+.++|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 578899999999999999999999999999 554 577889999999999999999
Q ss_pred CCCCCCeEEEEec
Q 011901 436 RAGKKGSAILIYT 448 (475)
Q Consensus 436 R~~~~g~~~~~~~ 448 (475)
|.|..+.|++++.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9986555555554
No 51
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.5e-37 Score=332.33 Aligned_cols=333 Identities=15% Similarity=0.170 Sum_probs=227.2
Q ss_pred CCCcHHHHHhhhhHhcC--CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
.+|+|||.+++..++.. .+++++++||+|||++++..+...+.. +...++||+||+ .|+.||.+++.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-------g~~~rvLIVvP~-sLl~Qw~~E~~~~f 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-------GAAERVLIIVPE-TLQHQWLVEMLRRF 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-------SSCCCEEEECCT-TTHHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-------CCCCeEEEEeCH-HHHHHHHHHHHHHh
Confidence 56999999999998864 479999999999999987777655533 234479999999 99999999998887
Q ss_pred CCCceEEEEcCcchhHHHH--HhhcCCcEEEEccHHHHHHHHh-CCCCCCCccEEEEecccccccCCch--HHHHHHHHh
Q 011901 198 PSLDTICVYGGTPISHQMR--ALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDEADQMLSVGFA--EDVEVILER 272 (475)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~--~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~~~~vViDE~H~~~~~~~~--~~~~~i~~~ 272 (475)
++.+.++.++........ ......+|+|+|++.+...... ..+...++++||+||+|++.+.+.. .....+...
T Consensus 224 -~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L 302 (968)
T 3dmq_A 224 -NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQL 302 (968)
T ss_dssp -CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHH
T ss_pred -CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHH
Confidence 566665544332221111 1113479999999988532111 1122457899999999999765422 112222222
Q ss_pred CCCCCcEEEEccCCChh----HHHHHHh----------------------------hcCC--------------------
Q 011901 273 LPQNRQSMMFSATMPPW----IRSLTNK----------------------------YLKN-------------------- 300 (475)
Q Consensus 273 ~~~~~~~i~~SAT~~~~----~~~~~~~----------------------------~~~~-------------------- 300 (475)
.....+++++||||.++ ...+... ....
T Consensus 303 ~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~ 382 (968)
T 3dmq_A 303 AEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDI 382 (968)
T ss_dssp HTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCS
T ss_pred hhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhh
Confidence 23456799999999531 0010000 0000
Q ss_pred --------------------------------CcEEEecCCCcccc-ccCeeEEEE------------------------
Q 011901 301 --------------------------------PLTVDLVGDSDQKL-ADGISLYSI------------------------ 323 (475)
Q Consensus 301 --------------------------------~~~~~~~~~~~~~~-~~~~~~~~~------------------------ 323 (475)
...+.......... ......+..
T Consensus 383 ~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (968)
T 3dmq_A 383 EPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAED 462 (968)
T ss_dssp STTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGG
T ss_pred HHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHH
Confidence 00000000000000 000000000
Q ss_pred ---------------------eccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc--cCCcccccCCCCHH
Q 011901 324 ---------------------ATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQS 380 (475)
Q Consensus 324 ---------------------~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~~h~~~~~~ 380 (475)
......|...+..+++. ..++++||||++...++.++..|.+ ++++..+||+|++.
T Consensus 463 ~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~ 541 (968)
T 3dmq_A 463 RARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSII 541 (968)
T ss_dssp GTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTT
T ss_pred HHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 11222356667777766 3678999999999999999999984 68899999999999
Q ss_pred HHHHHHHHHhcCC--CcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHH
Q 011901 381 QRERTLSAFRDGR--FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (475)
Q Consensus 381 ~r~~~~~~f~~g~--~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i 458 (475)
+|+.+++.|++|+ ++|||||+++++|+|+|++++||++|+|+++..|.|++||+||.|+.|.|+++.........+.|
T Consensus 542 ~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i 621 (968)
T 3dmq_A 542 ERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVL 621 (968)
T ss_dssp HHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHH
T ss_pred HHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHH
Confidence 9999999999998 99999999999999999999999999999999999999999999999877766544333333444
Q ss_pred HHHh
Q 011901 459 ERDV 462 (475)
Q Consensus 459 ~~~~ 462 (475)
.+.+
T Consensus 622 ~~~~ 625 (968)
T 3dmq_A 622 VRWY 625 (968)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4544
No 52
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=4.5e-38 Score=313.02 Aligned_cols=279 Identities=17% Similarity=0.179 Sum_probs=192.5
Q ss_pred HHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEE
Q 011901 127 KAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY 206 (475)
Q Consensus 127 ~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~ 206 (475)
......+..++++++++|||||||++|++|++..+.. .+.+++|++||++|+.|+++.+.. ..+....
T Consensus 12 ~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g----~~v~~~~ 79 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRG----LPVRYQT 79 (459)
T ss_dssp ---CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTT----SCEEECC
T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcC----ceEeEEe
Confidence 3344556678899999999999999999999988754 257899999999999999999863 2222111
Q ss_pred cCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHh-CCCCCcEEEEccC
Q 011901 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-LPQNRQSMMFSAT 285 (475)
Q Consensus 207 ~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT 285 (475)
+.... ....+..+.++|.+.+...+... ..++++++||+||+|++... .......+... ..++.|+++||||
T Consensus 80 ~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~-~~~~~~~~~~~~~~~~~~~il~SAT 152 (459)
T 2z83_A 80 SAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPA-SIAARGYIATKVELGEAAAIFMTAT 152 (459)
T ss_dssp -------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHH-HHHHHHHHHHHHHTTSCEEEEECSS
T ss_pred ccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCch-hhHHHHHHHHHhccCCccEEEEEcC
Confidence 11110 01233467788888887666554 45889999999999984111 11111111111 1357899999999
Q ss_pred CChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHH
Q 011901 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA 365 (475)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~ 365 (475)
++..+..+... ..|..... . ......... ...++.+ .++++||||++++.++.+++.|.
T Consensus 153 ~~~~~~~~~~~--~~pi~~~~-~---------------~~~~~~~~~-~~~~l~~--~~~~~LVF~~s~~~~~~l~~~L~ 211 (459)
T 2z83_A 153 PPGTTDPFPDS--NAPIHDLQ-D---------------EIPDRAWSS-GYEWITE--YAGKTVWFVASVKMGNEIAMCLQ 211 (459)
T ss_dssp CTTCCCSSCCC--SSCEEEEE-C---------------CCCSSCCSS-CCHHHHH--CCSCEEEECSCHHHHHHHHHHHH
T ss_pred CCcchhhhccC--CCCeEEec-c---------------cCCcchhHH-HHHHHHh--cCCCEEEEeCChHHHHHHHHHHH
Confidence 98753221110 11211110 0 000000111 1122332 36799999999999999999997
Q ss_pred c-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEE--------------------cCCCCCh
Q 011901 366 K-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH--------------------YELPNTS 424 (475)
Q Consensus 366 ~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~--------------------~~~p~~~ 424 (475)
+ ++.+..+||+ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ ++.|.+.
T Consensus 212 ~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~ 286 (459)
T 2z83_A 212 RAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITS 286 (459)
T ss_dssp HTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCH
T ss_pred hcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCH
Confidence 5 4788999985 6778899999999999999999999999999 99999 6799999
Q ss_pred hHHHHhhhccCCCCC-CCeEEEEecch
Q 011901 425 ETFVHRTGRTGRAGK-KGSAILIYTDQ 450 (475)
Q Consensus 425 ~~~~Q~~GR~gR~~~-~g~~~~~~~~~ 450 (475)
.+|+||+||+||.|+ +|.|++++++.
T Consensus 287 ~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 287 ASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHhccccCCCCCCCCeEEEEEccc
Confidence 999999999999987 89999999875
No 53
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=5.4e-35 Score=295.92 Aligned_cols=311 Identities=18% Similarity=0.202 Sum_probs=215.0
Q ss_pred CCCcHHHHHhhhhHh----cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHh
Q 011901 120 SKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 195 (475)
..|+|||.++++.+. .+.++++..+||+|||++++..+ ..+.. .+...++||+|| ..|+.||.+++++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i-~~~~~------~~~~~~~LIv~P-~~l~~qw~~e~~~ 107 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKK------ENELTPSLVICP-LSVLKNWEEELSK 107 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHH------TTCCSSEEEEEC-STTHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHH-HHHHh------cCCCCCEEEEcc-HHHHHHHHHHHHH
Confidence 469999999998773 56789999999999999875444 33332 123457999999 4688999999999
Q ss_pred hCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCC
Q 011901 196 SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (475)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~ 275 (475)
++++.++.+..|+... ....+.+|+|+|++.+..... +....+++||+||+|++.+.. ......+..++
T Consensus 108 ~~~~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~- 176 (500)
T 1z63_A 108 FAPHLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK- 176 (500)
T ss_dssp HCTTSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-
T ss_pred HCCCceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-
Confidence 9988887766555421 122457999999999865433 223468899999999997753 33445555663
Q ss_pred CCcEEEEccCCChh-HHHH---HH---------------------------------hhcCCCcEEEecCCC---ccccc
Q 011901 276 NRQSMMFSATMPPW-IRSL---TN---------------------------------KYLKNPLTVDLVGDS---DQKLA 315 (475)
Q Consensus 276 ~~~~i~~SAT~~~~-~~~~---~~---------------------------------~~~~~~~~~~~~~~~---~~~~~ 315 (475)
..+.+++||||..+ ..++ .. ..+ .+..+...... ....+
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp 255 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLP 255 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSC
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCC
Confidence 46789999999542 1111 10 011 12222110000 00011
Q ss_pred cCeeEEEEecc---------------------------------------------------------CccchHHHHHHH
Q 011901 316 DGISLYSIATS---------------------------------------------------------MYEKPSIIGQLI 338 (475)
Q Consensus 316 ~~~~~~~~~~~---------------------------------------------------------~~~~~~~l~~l~ 338 (475)
. .....+... ...|...+..++
T Consensus 256 ~-~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 256 D-KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEII 334 (500)
T ss_dssp S-EEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHH
T ss_pred C-CeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHH
Confidence 1 111111110 122333444455
Q ss_pred HHh-ccCCcEEEEecChhhHHHHHHHHHc--cCCcccccCCCCHHHHHHHHHHHhcC-CCc-EEEecCccccCCCCCCCC
Q 011901 339 TEH-AKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLSAFRDG-RFN-ILIATDVAARGLDVPNVD 413 (475)
Q Consensus 339 ~~~-~~~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~-vlvaT~~~~~Gidi~~~~ 413 (475)
.+. ..+.+++|||.+...++.+...|.+ +..+..+||+++.++|.++++.|++| ..+ +|++|+++++|+|+|+++
T Consensus 335 ~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~ 414 (500)
T 1z63_A 335 EEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSAN 414 (500)
T ss_dssp HHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCS
T ss_pred HHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCC
Confidence 443 4678999999999999999999975 68889999999999999999999998 454 789999999999999999
Q ss_pred EEEEcCCCCChhHHHHhhhccCCCCCCCeE--EEEecchh
Q 011901 414 LIIHYELPNTSETFVHRTGRTGRAGKKGSA--ILIYTDQQ 451 (475)
Q Consensus 414 ~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~--~~~~~~~~ 451 (475)
+||++|+|+++..|.|++||++|.|+...+ +.+++...
T Consensus 415 ~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 415 RVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp EEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred EEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 999999999999999999999999987665 44455443
No 54
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3.1e-35 Score=268.43 Aligned_cols=214 Identities=36% Similarity=0.646 Sum_probs=192.0
Q ss_pred CCCccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCC
Q 011901 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (475)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~ 172 (475)
..+.+..+|+++++++.+.+.+.+.|+..|+++|.++++.++.|+++++++|||||||++|++|++..+..... .....
T Consensus 23 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~-~~~~~ 101 (242)
T 3fe2_A 23 NCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF-LERGD 101 (242)
T ss_dssp CCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC-CCTTC
T ss_pred CCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc-cccCC
Confidence 35567788999999999999999999999999999999999999999999999999999999999988864221 12235
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (475)
+++++|++||++|+.|+++.++++.. ++.+..++|+.....+...+..+++|+|+||++|.+.+.++...+.+++++|
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lV 181 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLV 181 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEE
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEE
Confidence 77899999999999999999888753 5677888899888888777888899999999999999998888899999999
Q ss_pred EecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEec
Q 011901 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (475)
Q Consensus 251 iDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 307 (475)
+||+|++.+++|...+..+++.++++.|+++||||+++.+..+...++.+|..+.+.
T Consensus 182 iDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 182 LDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp ETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred EeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999999888763
No 55
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=266.32 Aligned_cols=212 Identities=36% Similarity=0.552 Sum_probs=180.7
Q ss_pred CCccCCcccC-CCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCC
Q 011901 94 SKDEGLDISK-LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (475)
Q Consensus 94 ~~~~~~~~~~-~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~ 172 (475)
.+.+...|++ +++++.+.+++.+.|+.+|+++|.++++.+++++++++++|||||||++|++|++..+...........
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~ 93 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------C
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccC
Confidence 4455667777 799999999999999999999999999999999999999999999999999999988754333333345
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhC-CCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vVi 251 (475)
+++++|++||++|+.|++++++++. .++.+..++|+.....+...+..+++|+|+||+++.+.+......+.++++||+
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 7889999999999999999999975 467788888888877777777788999999999999999888888999999999
Q ss_pred ecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEE
Q 011901 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (475)
Q Consensus 252 DE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 305 (475)
||+|++.+++|...+..++..++++.|+++||||+++.+..+...++.+|..+.
T Consensus 174 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 174 DEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred ECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999999999999999999999999999887764
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.3e-34 Score=296.73 Aligned_cols=283 Identities=18% Similarity=0.195 Sum_probs=206.3
Q ss_pred hHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcch
Q 011901 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPI 211 (475)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~ 211 (475)
..+.+++++++||||||||+ +++..+.. ....++++||++||.|+++.+.+. +..+..++|+...
T Consensus 151 r~l~rk~vlv~apTGSGKT~----~al~~l~~---------~~~gl~l~PtR~LA~Qi~~~l~~~--g~~v~lltG~~~~ 215 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTY----HAIQKYFS---------AKSGVYCGPLKLLAHEIFEKSNAA--GVPCDLVTGEERV 215 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHH----HHHHHHHH---------SSSEEEEESSHHHHHHHHHHHHHT--TCCEEEECSSCEE
T ss_pred HhcCCCEEEEEcCCCCCHHH----HHHHHHHh---------cCCeEEEeCHHHHHHHHHHHHHhc--CCcEEEEECCeeE
Confidence 34577899999999999997 34444433 223599999999999999999887 5677777777653
Q ss_pred hHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCC-CCCcEEEEccCCChhH
Q 011901 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWI 290 (475)
Q Consensus 212 ~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~ 290 (475)
.. .......+++++|++.+. ....++++|+||+|++.+.+++..+..++..++ ...+++++|||. +..
T Consensus 216 iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i 284 (677)
T 3rc3_A 216 TV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLV 284 (677)
T ss_dssp CC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHH
T ss_pred Ee--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HHH
Confidence 10 000123789999986543 246789999999999999999999999999887 678999999994 333
Q ss_pred HHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCC
Q 011901 291 RSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYN 369 (475)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~ 369 (475)
..+.... +....+...... . .. ........ .+... ..+.+|||+++++++.+++.|.+ ++.
T Consensus 285 ~~l~~~~-~~~~~v~~~~r~-----~--~l-~~~~~~l~-------~l~~~--~~g~iIf~~s~~~ie~la~~L~~~g~~ 346 (677)
T 3rc3_A 285 MELMYTT-GEEVEVRDYKRL-----T--PI-SVLDHALE-------SLDNL--RPGDCIVCFSKNDIYSVSRQIEIRGLE 346 (677)
T ss_dssp HHHHHHH-TCCEEEEECCCS-----S--CE-EECSSCCC-------SGGGC--CTTEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhc-CCceEEEEeeec-----c--hH-HHHHHHHH-------HHHhc--CCCCEEEEcCHHHHHHHHHHHHhcCCC
Confidence 4333333 333333211100 0 00 00011000 01111 23558899999999999999975 478
Q ss_pred cccccCCCCHHHHHHHHHHHhc--CCCcEEEecCccccCCCCCCCCEEEEcCC--------------CCChhHHHHhhhc
Q 011901 370 CEPLHGDISQSQRERTLSAFRD--GRFNILIATDVAARGLDVPNVDLIIHYEL--------------PNTSETFVHRTGR 433 (475)
Q Consensus 370 ~~~~h~~~~~~~r~~~~~~f~~--g~~~vlvaT~~~~~Gidi~~~~~vi~~~~--------------p~~~~~~~Q~~GR 433 (475)
+..+||+|++++|..+++.|++ |..+|||||+++++|+|+ ++++||+++. |.+.++|.||+||
T Consensus 347 v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GR 425 (677)
T 3rc3_A 347 SAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGR 425 (677)
T ss_dssp CEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTT
T ss_pred eeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcC
Confidence 9999999999999999999999 889999999999999999 9999999999 7799999999999
Q ss_pred cCCCCCC---CeEEEEecchhHHHHHHHHH
Q 011901 434 TGRAGKK---GSAILIYTDQQARQVKSIER 460 (475)
Q Consensus 434 ~gR~~~~---g~~~~~~~~~~~~~~~~i~~ 460 (475)
+||.|+. |.|++++.. +...+..+..
T Consensus 426 AGR~g~~g~~G~v~~l~~~-d~~~~~~~~~ 454 (677)
T 3rc3_A 426 AGRFSSRFKEGEVTTMNHE-DLSLLKEILK 454 (677)
T ss_dssp BTCTTSSCSSEEEEESSTT-HHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEEEecc-hHHHHHHHHh
Confidence 9999864 666665544 4444444433
No 57
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=4.1e-34 Score=254.66 Aligned_cols=200 Identities=35% Similarity=0.578 Sum_probs=180.0
Q ss_pred CcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEE
Q 011901 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~li 178 (475)
.+|+++++++.+++.+.+.|+.+|+++|.++++.++.++++++.+|||||||++|++|++..+.. ...++++++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~~~~~~~li 76 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL------KKDNIQAMV 76 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT------TSCSCCEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc------cCCCeeEEE
Confidence 46889999999999999999999999999999999999999999999999999999999887632 134678999
Q ss_pred EcCCHHHHHHHHHHHHhhCC---CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011901 179 LAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H 255 (475)
++||++|+.|+++.+.++.. +..+...+|+.........+..+++|+|+||+++.+.+.++...+.+++++|+||+|
T Consensus 77 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 156 (206)
T 1vec_A 77 IVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 156 (206)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHH
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChH
Confidence 99999999999999988864 566777888887777766777789999999999999998888888999999999999
Q ss_pred ccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEE
Q 011901 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304 (475)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 304 (475)
++.+.++...+..++..++++.|+++||||+++.+..+...++.+|..+
T Consensus 157 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 157 KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999889999999999999899999999999999999999999888654
No 58
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=4.2e-34 Score=254.82 Aligned_cols=204 Identities=48% Similarity=0.835 Sum_probs=184.5
Q ss_pred cccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEE
Q 011901 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil 179 (475)
+|+++++++.+.+.+.+.|+..|+++|.++++.+++++++++++|||||||++|+++++..+... .....+++++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~---~~~~~~~~~lil 78 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPS---QERGRKPRALVL 78 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC---CCTTCCCSEEEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhc---cccCCCCcEEEE
Confidence 47889999999999999999999999999999999999999999999999999999999876431 112346789999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccc
Q 011901 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~ 259 (475)
+|+++|+.|+++.+.++++.+++..++|+.....+...+..+++|+|+||+.+.+.+..+...+.+++++|+||+|++.+
T Consensus 79 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 79 TPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp CSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH
T ss_pred ECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc
Confidence 99999999999999999988888888898887777777777899999999999999988888899999999999999999
Q ss_pred CCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEe
Q 011901 260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (475)
Q Consensus 260 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 306 (475)
.++...+..++..+++..|+++||||+++.+..+...++.+|..+.+
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 88999999999999999999999999999999999999999887753
No 59
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.4e-34 Score=260.02 Aligned_cols=202 Identities=34% Similarity=0.587 Sum_probs=180.0
Q ss_pred CcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEE
Q 011901 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~li 178 (475)
.+|+++++++.+.+.+.+.|+.+|+++|.++++.+++++++++++|||||||++|++|++..+.. ...+.+++|
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~------~~~~~~~li 77 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP------ERAEVQAVI 77 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT------TSCSCCEEE
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh------CcCCceEEE
Confidence 45889999999999999999999999999999999999999999999999999999999987633 124678999
Q ss_pred EcCCHHHHHHHHHHHHhhCC------CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEe
Q 011901 179 LAPTRELAKQVEKEFHESAP------SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (475)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViD 252 (475)
++||++|+.|+++.++++.. +..+..++|+.........+..+++|+|+||+++.+.+.++...+.+++++|+|
T Consensus 78 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 157 (219)
T 1q0u_A 78 TAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred EcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEc
Confidence 99999999999999988764 456677778877665555555678999999999999998887788899999999
Q ss_pred cccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEe
Q 011901 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (475)
Q Consensus 253 E~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 306 (475)
|+|++.++++...+..++..++++.|++++|||+++.+..+...++.+|..+.+
T Consensus 158 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 158 EADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred CchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 999999999999999999999989999999999999999999999999988765
No 60
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=258.95 Aligned_cols=204 Identities=35% Similarity=0.587 Sum_probs=182.8
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeE
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 176 (475)
+..+|+++++++.+.+.+.+.|+..|+++|.++++.++.++++++++|||||||++|++|++..+... ..++++
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~------~~~~~~ 114 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET------PQRLFA 114 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------CCSSCE
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC------CCCceE
Confidence 34568899999999999999999999999999999999999999999999999999999999887652 235679
Q ss_pred EEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHh-CCCCCCCccEEEEec
Q 011901 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDE 253 (475)
Q Consensus 177 lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~~~~vViDE 253 (475)
+|++||++|+.|+++.++++.. ++.+..++|+.....+...+..+++|+|+||++|.+.+.+ ..+.+.+++++|+||
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 9999999999999999988754 5677788888877776667778899999999999998876 456788999999999
Q ss_pred ccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEe
Q 011901 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (475)
Q Consensus 254 ~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 306 (475)
+|++.+++|...+..++..++++.|+++||||+++.+..+...++.+|..+.+
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999989999999999999999999999999987754
No 61
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=5.9e-34 Score=257.86 Aligned_cols=206 Identities=32% Similarity=0.515 Sum_probs=178.3
Q ss_pred CCCccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCC
Q 011901 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (475)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~ 172 (475)
..+.+...|+++++++.+.+.+.+.|+..|+++|.++++.++.++++++++|||||||++|++|++..+.. ...
T Consensus 18 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~------~~~ 91 (230)
T 2oxc_A 18 VLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL------ENL 91 (230)
T ss_dssp ------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TSC
T ss_pred CCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cCC
Confidence 34455677999999999999999999999999999999999999999999999999999999999887643 124
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCC---CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~v 249 (475)
+.+++|++||++|+.|+++.++++.. ++++..++|+.....+...+ .+++|+|+||+++.+.+..+...+.+++++
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~l 170 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLF 170 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEE
Confidence 67899999999999999999998864 56777788887766555444 468999999999999998887788899999
Q ss_pred EEecccccccCC-chHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEE
Q 011901 250 VLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (475)
Q Consensus 250 ViDE~H~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 305 (475)
|+||+|++.+++ |...+..++..++...|++++|||+++.+..+...++.+|..+.
T Consensus 171 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 171 ILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp EESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred EeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 999999999887 99999999999998999999999999999999999998887764
No 62
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=6.3e-34 Score=258.80 Aligned_cols=206 Identities=33% Similarity=0.549 Sum_probs=172.6
Q ss_pred CccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCC
Q 011901 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (475)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 174 (475)
+.+..+|+++++++.+.+.+.+.|+..|+++|.++++.++.++++++++|||||||++|++|++..+.. ...+.
T Consensus 26 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~------~~~~~ 99 (237)
T 3bor_A 26 NEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI------EFKET 99 (237)
T ss_dssp -CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT------TSCSC
T ss_pred CCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cCCCc
Confidence 345567999999999999999999999999999999999999999999999999999999999987632 12467
Q ss_pred eEEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcC-CcEEEEccHHHHHHHHhCCCCCCCccEEEE
Q 011901 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (475)
Q Consensus 175 ~~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~Ilv~T~~~l~~~l~~~~~~~~~~~~vVi 251 (475)
+++|++||++|+.|+++.++++.. +..+...+|+.........+..+ ++|+|+||++|.+.+.++...+.++++||+
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 100 QALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 899999999999999999999875 45566677777655555555444 899999999999999888888899999999
Q ss_pred ecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEe
Q 011901 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (475)
Q Consensus 252 DE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 306 (475)
||+|++.++++...+..++..++...|++++|||+++.+..+...++.+|..+.+
T Consensus 180 DEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 180 DEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp ESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred CCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 9999999988999999999999999999999999999999999999998887753
No 63
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=254.42 Aligned_cols=209 Identities=31% Similarity=0.538 Sum_probs=180.7
Q ss_pred CccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCC
Q 011901 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (475)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 174 (475)
..+..+|+++++++.+.+.|.+.|+..|+++|.++++.++.++++++++|||||||++|++|++..+.+... ....++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~ 98 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--TSTDGL 98 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC--CGGGCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc--cccCCc
Confidence 445567999999999999999999999999999999999999999999999999999999999988865321 112467
Q ss_pred eEEEEcCCHHHHHHHHHHHHhhCCC--CceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhC-CCCCCCccEEEE
Q 011901 175 LCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVL 251 (475)
Q Consensus 175 ~~lil~Pt~~La~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-~~~~~~~~~vVi 251 (475)
+++|++||++|+.|+++.+++++.. +.+..++|+.........+ .+++|+|+||+++.+.+.+. ...+.+++++|+
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 8999999999999999999998754 6677777877665554444 46899999999999988775 466789999999
Q ss_pred ecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEe
Q 011901 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (475)
Q Consensus 252 DE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 306 (475)
||+|++.++++...+..++..+++.+|+++||||+++.+..+...++.+|..+.+
T Consensus 178 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~ 232 (236)
T 2pl3_A 178 DEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232 (236)
T ss_dssp TTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEEC
T ss_pred eChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999999988764
No 64
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.5e-33 Score=257.37 Aligned_cols=204 Identities=33% Similarity=0.543 Sum_probs=175.7
Q ss_pred cCCcccCCC--CCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCC
Q 011901 97 EGLDISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (475)
Q Consensus 97 ~~~~~~~~~--l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 174 (475)
....|++++ +++.+++.+.+.|+..|+++|.++++.++.++++++++|||||||++|++|++..+.+.... ...+.
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~~~ 127 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNGT 127 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC--GGGCC
T ss_pred ccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc--ccCCc
Confidence 344566666 99999999999999999999999999999999999999999999999999999988653211 12367
Q ss_pred eEEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCC-CCCCCccEEEE
Q 011901 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-LNLSEVQFVVL 251 (475)
Q Consensus 175 ~~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~-~~~~~~~~vVi 251 (475)
+++|++||++|+.|+++.+++++. +..+..++|+.........+..+++|+|+||+++...+.... ..+.++++||+
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 899999999999999999999875 445677788888777777777789999999999999887754 67889999999
Q ss_pred ecccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCc
Q 011901 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL 302 (475)
Q Consensus 252 DE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 302 (475)
||+|++.+++|...+..+++.+++.+|+++||||+++.+..+...++.++.
T Consensus 208 DEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 208 DEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred cChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999998887654
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=3.4e-33 Score=252.12 Aligned_cols=204 Identities=33% Similarity=0.556 Sum_probs=173.7
Q ss_pred ccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCe
Q 011901 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 175 (475)
....+|+++++++.+.+.+.+.|+..|+++|.++++.++.++++++++|||||||++|++|++..+.. ...+++
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~------~~~~~~ 84 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQ 84 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TCCSCC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc------cCCCce
Confidence 34567899999999999999999999999999999999999999999999999999999999987632 234678
Q ss_pred EEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEec
Q 011901 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (475)
Q Consensus 176 ~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE 253 (475)
+++++|+++|+.|+++.+.++.. ++.+....|+.........+.. ++|+|+||+.|.+.+.++...+.+++++|+||
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 85 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163 (224)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcC
Confidence 99999999999999999998865 4566677777665555444443 89999999999999988888889999999999
Q ss_pred ccccccCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEe
Q 011901 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (475)
Q Consensus 254 ~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 306 (475)
+|++.++++...+..++..+++..|+++||||+++.+..+...++.+|..+.+
T Consensus 164 ah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~ 216 (224)
T 1qde_A 164 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 216 (224)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC-
T ss_pred hhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999987754
No 66
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=263.65 Aligned_cols=201 Identities=27% Similarity=0.447 Sum_probs=175.8
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcC--CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCC
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 174 (475)
...+|+++++++.+++.|.++|+..|+++|.++++.++.+ +++++++|||||||++|++|++..+.. ...++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~------~~~~~ 163 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYP 163 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT------TSCSC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc------cCCCc
Confidence 4567999999999999999999999999999999999987 899999999999999999999988633 23467
Q ss_pred eEEEEcCCHHHHHHHHHHHHhhCC---CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHh-CCCCCCCccEEE
Q 011901 175 LCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVV 250 (475)
Q Consensus 175 ~~lil~Pt~~La~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~~~~vV 250 (475)
+++|++||++||.|+++.+..+.. ++.+....|+...... ...+++|+||||++|.+++.+ +.+.+.++++||
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lV 240 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEE
Confidence 899999999999999999888764 5667777776654322 245689999999999999966 556788999999
Q ss_pred Eeccccccc-CCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEEe
Q 011901 251 LDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (475)
Q Consensus 251 iDE~H~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 306 (475)
+||+|++.+ .+|...+..++..+++.+|+++||||+++.+..++..++.+|..+.+
T Consensus 241 lDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp ETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred EeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEe
Confidence 999999987 67889999999999999999999999999999999999999988865
No 67
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2e-33 Score=258.34 Aligned_cols=210 Identities=36% Similarity=0.603 Sum_probs=182.9
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhh---cCCCCC
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK---HGRGRN 173 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~---~~~~~~ 173 (475)
+..+|+++++++.+.++|...|+..|+++|.++++.++.++++++++|||||||++|++|++..+...... .....+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 45568899999999999999999999999999999999999999999999999999999999988653211 112335
Q ss_pred CeEEEEcCCHHHHHHHHHHHHhhCC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEE
Q 011901 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (475)
Q Consensus 174 ~~~lil~Pt~~La~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vVi 251 (475)
++++|++||++|+.|+++.++++.. ++.+..++|+.....+...+..+++|+|+||++|.+.+..+...+.+++++|+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 7899999999999999999998764 45677788888877777777788999999999999999988888999999999
Q ss_pred ecccccccCCchHHHHHHHHhC--CC--CCcEEEEccCCChhHHHHHHhhcCCCcEEEe
Q 011901 252 DEADQMLSVGFAEDVEVILERL--PQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (475)
Q Consensus 252 DE~H~~~~~~~~~~~~~i~~~~--~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 306 (475)
||+|++.+++|...+..++..+ +. +.|+++||||+++.+..+...++.+|..+.+
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEE
Confidence 9999999999999999999854 33 6799999999999999999999999888765
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.1e-32 Score=247.95 Aligned_cols=201 Identities=29% Similarity=0.513 Sum_probs=175.7
Q ss_pred CcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEE
Q 011901 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~li 178 (475)
..|+++++++.+.+.+.+.|+..|+++|.++++.++.++++++++|||||||++|+++++..+.. ...+++++|
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~------~~~~~~~li 87 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVLV 87 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC------CTTCCCEEE
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc------cCCCEEEEE
Confidence 45889999999999999999999999999999999999999999999999999999999887532 123568999
Q ss_pred EcCCHHHHHHHHHHHHhhCC---CCceEEEEcCcchhHHHHHhh-cCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecc
Q 011901 179 LAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (475)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~ 254 (475)
++||++|+.|++++++++.. ++.+..++|+.....+...+. ..++|+|+||+.+...+......+.+++++|+||+
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 88 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 167 (220)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESH
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCH
Confidence 99999999999999988864 567777888877666655554 35799999999999999888888999999999999
Q ss_pred ccccc-CCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCcEEE
Q 011901 255 DQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (475)
Q Consensus 255 H~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 305 (475)
|++.+ .++...+..++..++++.|++++|||+++.+..+...++.+|..+.
T Consensus 168 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 168 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99986 3677888889999988999999999999999999999999887664
No 69
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.4e-31 Score=275.18 Aligned_cols=323 Identities=13% Similarity=0.181 Sum_probs=216.3
Q ss_pred CCCcHHHHHhhhhHh---------cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHH
Q 011901 120 SKLFPIQKAVLEPAM---------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~---------~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (475)
..|+|||.+++..+. .+..+++..+||+|||+.++..+...+..... ......++||+||+ .|+.||.
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~--~~p~~~~~LiV~P~-sll~qW~ 130 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD--CKPEIDKVIVVSPS-SLVRNWY 130 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT--SSCSCSCEEEEECH-HHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc--ccCCCCcEEEEecH-HHHHHHH
Confidence 369999999999874 34568999999999999886665544332111 11123469999996 8899999
Q ss_pred HHHHhhCCC-CceEEEEcCcchhHHHH--Hh-h-----cCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCC
Q 011901 191 KEFHESAPS-LDTICVYGGTPISHQMR--AL-D-----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261 (475)
Q Consensus 191 ~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~-~-----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~ 261 (475)
+++.++++. +.+..++++........ .. . ...+|+|+|++.+.... ..+....+++||+||+|++.+..
T Consensus 131 ~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~ 208 (644)
T 1z3i_X 131 NEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD 208 (644)
T ss_dssp HHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh
Confidence 999999764 55555566544322111 11 1 14789999999987543 22334578899999999998753
Q ss_pred chHHHHHHHHhCCCCCcEEEEccCCChhH-------------------HHHHHhhcC-----------------------
Q 011901 262 FAEDVEVILERLPQNRQSMMFSATMPPWI-------------------RSLTNKYLK----------------------- 299 (475)
Q Consensus 262 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~-------------------~~~~~~~~~----------------------- 299 (475)
......+..+. ..+.+++||||..+. ..+...|..
T Consensus 209 --~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 209 --NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp --HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred --hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 23333444443 457899999995321 001100000
Q ss_pred ------CCcEEEecCCC-ccccccCeeEEE--------------------------------------------------
Q 011901 300 ------NPLTVDLVGDS-DQKLADGISLYS-------------------------------------------------- 322 (475)
Q Consensus 300 ------~~~~~~~~~~~-~~~~~~~~~~~~-------------------------------------------------- 322 (475)
.+..+.-.... ....+.......
T Consensus 286 ~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 286 ELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 00000000000 000000000000
Q ss_pred ---------------------------EeccCccchHHHHHHHHHh--ccCCcEEEEecChhhHHHHHHHHHc-cCCccc
Q 011901 323 ---------------------------IATSMYEKPSIIGQLITEH--AKGGKCIVFTQTKRDADRLAHAMAK-SYNCEP 372 (475)
Q Consensus 323 ---------------------------~~~~~~~~~~~l~~l~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~ 372 (475)
.......|...+..++... ..+.++||||.+...++.+...|.. ++.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 0001123344555555544 2478999999999999999999964 588999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCc---EEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEE--EEe
Q 011901 373 LHGDISQSQRERTLSAFRDGRFN---ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI--LIY 447 (475)
Q Consensus 373 ~h~~~~~~~r~~~~~~f~~g~~~---vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~--~~~ 447 (475)
+||+++.++|..+++.|++|... +|++|.+.++|+|++++++||++|+||++..+.|++||++|.|+...+. .++
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 99999999999999999998754 8999999999999999999999999999999999999999999876544 455
Q ss_pred cch
Q 011901 448 TDQ 450 (475)
Q Consensus 448 ~~~ 450 (475)
+..
T Consensus 526 ~~~ 528 (644)
T 1z3i_X 526 STG 528 (644)
T ss_dssp ETT
T ss_pred ECC
Confidence 544
No 70
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-32 Score=286.69 Aligned_cols=332 Identities=18% Similarity=0.239 Sum_probs=229.9
Q ss_pred CCCcHHHHHhhhhHh----cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHh
Q 011901 120 SKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 195 (475)
.+|+|||.++++.+. .+.++++..+||+|||++++..+...+... .....+||+|| ..|+.||.+++.+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~------~~~~~~LIV~P-~sll~qW~~E~~~ 307 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR------RQNGPHIIVVP-LSTMPAWLDTFEK 307 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH------SCCSCEEEECC-TTTHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc------CCCCCEEEEEC-chHHHHHHHHHHH
Confidence 369999999998776 678999999999999998765554433221 22445899999 7788999999999
Q ss_pred hCCCCceEEEEcCcchhHHHHH------------hhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCch
Q 011901 196 SAPSLDTICVYGGTPISHQMRA------------LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (475)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~ 263 (475)
+++++.+.+..|+......... ....++|+|+|++.+...... +....+++||+||||++.+. .
T Consensus 308 ~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~--~ 383 (800)
T 3mwy_W 308 WAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNA--E 383 (800)
T ss_dssp HSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCS--S
T ss_pred HCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCc--h
Confidence 9999888887776654443322 123478999999999764332 11236789999999999764 3
Q ss_pred HHHHHHHHhCCCCCcEEEEccCCCh----hHHHHHHhhcCC-----------------------------CcEEEecCCC
Q 011901 264 EDVEVILERLPQNRQSMMFSATMPP----WIRSLTNKYLKN-----------------------------PLTVDLVGDS 310 (475)
Q Consensus 264 ~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~-----------------------------~~~~~~~~~~ 310 (475)
......+..+ ...+.+++||||.. .+..+....... |..+......
T Consensus 384 s~~~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~d 462 (800)
T 3mwy_W 384 SSLYESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKD 462 (800)
T ss_dssp SHHHHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGG
T ss_pred hHHHHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHh
Confidence 3444555555 34567999999932 122222211111 1111100000
Q ss_pred ccccccCeeEEEEec-----------------------------------------------------------------
Q 011901 311 DQKLADGISLYSIAT----------------------------------------------------------------- 325 (475)
Q Consensus 311 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 325 (475)
............+..
T Consensus 463 v~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~ 542 (800)
T 3mwy_W 463 VEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKM 542 (800)
T ss_dssp GTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----C
T ss_pred hhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccc
Confidence 000000000000000
Q ss_pred ----------cCccchHHHHHHHHHh-ccCCcEEEEecChhhHHHHHHHHH-ccCCcccccCCCCHHHHHHHHHHHhcCC
Q 011901 326 ----------SMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393 (475)
Q Consensus 326 ----------~~~~~~~~l~~l~~~~-~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 393 (475)
....|...+..++... ..+.++||||.....++.+...|. .++.+..+||+++..+|..+++.|+++.
T Consensus 543 ~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~ 622 (800)
T 3mwy_W 543 TRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPD 622 (800)
T ss_dssp CSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTT
T ss_pred cHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCC
Confidence 0123445566666654 357899999999999999999996 4688999999999999999999999865
Q ss_pred C---cEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeE--EEEecch--hHHHHHHHHHHhC
Q 011901 394 F---NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSA--ILIYTDQ--QARQVKSIERDVG 463 (475)
Q Consensus 394 ~---~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~--~~~~~~~--~~~~~~~i~~~~~ 463 (475)
. .+|++|.++++|+|++.+++||++|+|||+..+.|++||++|.|+...+ +.+++.. +...+....+...
T Consensus 623 ~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~ 699 (800)
T 3mwy_W 623 SNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMI 699 (800)
T ss_dssp CSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTT
T ss_pred CCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4 4999999999999999999999999999999999999999999876544 4455554 3445555555543
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=8.6e-32 Score=287.04 Aligned_cols=312 Identities=15% Similarity=0.142 Sum_probs=205.7
Q ss_pred CCcHHHHHhhhhHhc--------------CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHH
Q 011901 121 KLFPIQKAVLEPAMQ--------------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~--------------~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La 186 (475)
.|+|+|.+|++.++. +++++++++||||||+++ ++++..+.. .....++||++|+++|+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~------~~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE------LDFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT------CTTCCEEEEEECGGGCC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh------cCCCceEEEEeCcHHHH
Confidence 599999999998875 367999999999999997 555544321 12246899999999999
Q ss_pred HHHHHHHHhhCCCCceEEEEcCcchhHHHHHh-hcCCcEEEEccHHHHHHHHhCC--CCCCCccEEEEecccccccCCch
Q 011901 187 KQVEKEFHESAPSLDTICVYGGTPISHQMRAL-DYGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLSVGFA 263 (475)
Q Consensus 187 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~l~~~~--~~~~~~~~vViDE~H~~~~~~~~ 263 (475)
.|+.+.+..+.+.. +.++.........+ ..+.+|+|+|+++|...+.... ..+....+||+||||++. ++
T Consensus 344 ~Q~~~~f~~f~~~~----v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~---~~ 416 (1038)
T 2w00_A 344 YQTMKEYQRFSPDS----VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQ---FG 416 (1038)
T ss_dssp HHHHHHHHTTSTTC----SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTH---HH
T ss_pred HHHHHHHHHhcccc----cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhc---ch
Confidence 99999999886531 23344434444444 3568999999999998876542 134577899999999965 23
Q ss_pred HHHHHHHHhCCCCCcEEEEccCCChhHH----HHHHhhcCC-----------------CcEEEecCCCcc-cc-c-c---
Q 011901 264 EDVEVILERLPQNRQSMMFSATMPPWIR----SLTNKYLKN-----------------PLTVDLVGDSDQ-KL-A-D--- 316 (475)
Q Consensus 264 ~~~~~i~~~~~~~~~~i~~SAT~~~~~~----~~~~~~~~~-----------------~~~~~~~~~~~~-~~-~-~--- 316 (475)
.....+...++ +.++++|||||..... .....+++. |..+........ .. . .
T Consensus 417 ~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~ 495 (1038)
T 2w00_A 417 EAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDE 495 (1038)
T ss_dssp HHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCH
T ss_pred HHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccH
Confidence 44566677775 5789999999975321 011112222 221111100000 00 0 0
Q ss_pred ----CeeEEEEeccCccchHHHHHHHHHh----------ccCCcEEEEecChhhHHHHHHHHHcc-------------CC
Q 011901 317 ----GISLYSIATSMYEKPSIIGQLITEH----------AKGGKCIVFTQTKRDADRLAHAMAKS-------------YN 369 (475)
Q Consensus 317 ----~~~~~~~~~~~~~~~~~l~~l~~~~----------~~~~~~lVf~~~~~~~~~l~~~L~~~-------------~~ 369 (475)
................++..++... ..+.+++|||++++.|..+++.|.+. ++
T Consensus 496 ~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k 575 (1038)
T 2w00_A 496 KKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLR 575 (1038)
T ss_dssp HHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCc
Confidence 0000000000000112233343322 13468999999999999999988542 33
Q ss_pred c-ccccCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCcEEEe
Q 011901 370 C-EPLHGD----------I----------SQ-----------------------------SQRERTLSAFRDGRFNILIA 399 (475)
Q Consensus 370 ~-~~~h~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~vlva 399 (475)
+ ..+||+ + ++ .+|..++++|++|+++|||+
T Consensus 576 ~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIv 655 (1038)
T 2w00_A 576 IATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIV 655 (1038)
T ss_dssp EEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred EEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEE
Confidence 4 344542 2 22 14788999999999999999
Q ss_pred cCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCC----CeEEEEec
Q 011901 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKK----GSAILIYT 448 (475)
Q Consensus 400 T~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~----g~~~~~~~ 448 (475)
|+++.+|+|+|.+ +++.+|.|.+...|+|++||++|.+.. |.++.+..
T Consensus 656 vd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 656 VGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp SSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred cchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999999 677889999999999999999997643 44444443
No 72
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.3e-30 Score=259.80 Aligned_cols=330 Identities=20% Similarity=0.195 Sum_probs=231.2
Q ss_pred cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.|. .+++.|.-+.-.+..|+ +..+.||+|||+++.+|++-..+. |..+.+++||..||.|-++++..+
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---------G~~vhVvT~ndyLA~rdae~m~~l 139 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---------GKGVHLVTVNDYLARRDALWMGPV 139 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---------CCceEEEeccHHHHHhHHHHHHHH
Confidence 354 48888888777777764 999999999999999998755433 677999999999999988887766
Q ss_pred CC--CCceEEEEcCc------------------------------------------------chhHHHHHhhcCCcEEE
Q 011901 197 AP--SLDTICVYGGT------------------------------------------------PISHQMRALDYGVDAVV 226 (475)
Q Consensus 197 ~~--~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~~Ilv 226 (475)
+. ++++.+++... ......+...+.+||+.
T Consensus 140 ~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItY 219 (822)
T 3jux_A 140 YLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTY 219 (822)
T ss_dssp HHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEE
T ss_pred HHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEE
Confidence 43 67788777621 00011112224589999
Q ss_pred EccHHH-HHHHHhC------CCCCCCccEEEEecccccccCC----------------chH-------------------
Q 011901 227 GTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQMLSVG----------------FAE------------------- 264 (475)
Q Consensus 227 ~T~~~l-~~~l~~~------~~~~~~~~~vViDE~H~~~~~~----------------~~~------------------- 264 (475)
||..-| ++++..+ ......+.+.||||+|.++=.. ...
T Consensus 220 gTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vde 299 (822)
T 3jux_A 220 GTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDE 299 (822)
T ss_dssp EEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECC
T ss_pred ccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEc
Confidence 999887 4555443 1224568899999999753100 000
Q ss_pred -------------HHHHH---------------------HHh---C----------------------------------
Q 011901 265 -------------DVEVI---------------------LER---L---------------------------------- 273 (475)
Q Consensus 265 -------------~~~~i---------------------~~~---~---------------------------------- 273 (475)
.+..+ ++. +
T Consensus 300 k~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLH 379 (822)
T 3jux_A 300 KARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLH 379 (822)
T ss_dssp SSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHH
T ss_pred ccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHH
Confidence 00000 000 0
Q ss_pred ---------------------------CCCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeE-EEEec
Q 011901 274 ---------------------------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL-YSIAT 325 (475)
Q Consensus 274 ---------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 325 (475)
+.-..+.+||+|..+....+...|..+ .+.+ .... ....... ..+..
T Consensus 380 QaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~I-Ptnk--p~~R~d~~d~vy~ 454 (822)
T 3jux_A 380 QAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVI-PTHK--PMIRKDHDDLVFR 454 (822)
T ss_dssp HHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEEC-CCSS--CCCCEECCCEEES
T ss_pred HHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEE-CCCC--CcceeecCcEEEe
Confidence 011367899999998877777666432 3332 2211 1111111 12234
Q ss_pred cCccchHHHHHHHHHh-ccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCcc
Q 011901 326 SMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (475)
Q Consensus 326 ~~~~~~~~l~~l~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 403 (475)
...+|...+...+.+. ..+.++||||++++.++.++..|.+ ++++..+||++...++..+...++.| .|+|||+++
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmA 532 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMA 532 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTT
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchh
Confidence 4456666666666553 4678999999999999999999975 58999999996666665566666666 599999999
Q ss_pred ccCCCCC--------CCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchh-------HHHHHHHHHHhCCC
Q 011901 404 ARGLDVP--------NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ-------ARQVKSIERDVGCR 465 (475)
Q Consensus 404 ~~Gidi~--------~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~-------~~~~~~i~~~~~~~ 465 (475)
++|+||+ +..+||+++.|.+...|.||+||+||.|.+|.+++|++.+| .+.+..+.+.+|..
T Consensus 533 gRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~ 609 (822)
T 3jux_A 533 GRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIE 609 (822)
T ss_dssp TTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCC
T ss_pred hCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcCCC
Confidence 9999998 56799999999999999999999999999999999999877 34566666666643
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.98 E-value=1.2e-31 Score=245.35 Aligned_cols=209 Identities=27% Similarity=0.444 Sum_probs=171.2
Q ss_pred CCccCCcccCC----CCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcC
Q 011901 94 SKDEGLDISKL----DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169 (475)
Q Consensus 94 ~~~~~~~~~~~----~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~ 169 (475)
.+.+..+|+++ ++++.+.+.+.+.|+..|+++|.++++.++.++++++++|||||||++|++|++..+.. .
T Consensus 20 ~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-----~ 94 (245)
T 3dkp_A 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ-----P 94 (245)
T ss_dssp CCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS-----C
T ss_pred CCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh-----c
Confidence 34455667665 89999999999999999999999999999999999999999999999999999988742 1
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHhhCCCC--ceEEEEcCcchhHHH-HHhhcCCcEEEEccHHHHHHHHhC--CCCCC
Q 011901 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQM-RALDYGVDAVVGTPGRVIDLIKRN--ALNLS 244 (475)
Q Consensus 170 ~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~Ilv~T~~~l~~~l~~~--~~~~~ 244 (475)
...+++++|++||++|+.|+++.+++++... .+..+.|+....... .....+++|+|+||++|.+.+... ...+.
T Consensus 95 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 95 ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 2346789999999999999999999987643 344444443222221 122456899999999999999876 46788
Q ss_pred CccEEEEeccccccc---CCchHHHHHHHHhCC-CCCcEEEEccCCChhHHHHHHhhcCCCcEEEec
Q 011901 245 EVQFVVLDEADQMLS---VGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (475)
Q Consensus 245 ~~~~vViDE~H~~~~---~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 307 (475)
+++++|+||+|++.+ .++...+..++..+. ++.|+++||||+++.+..+...++.+|..+.+.
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIG 241 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEEC
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999987 457788888877764 578999999999999999999999999888763
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=5.6e-28 Score=249.58 Aligned_cols=172 Identities=19% Similarity=0.316 Sum_probs=128.0
Q ss_pred CCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChh
Q 011901 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKR 355 (475)
Q Consensus 276 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~ 355 (475)
..|++++|||+++..... . ...+........ ... ....+.........++..+......+.++||||++..
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~--~~~~~~~~r~~~-l~~--p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 450 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----S--GRVVEQIIRPTG-LLD--PLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVR 450 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----C--SEEEEECSCTTC-CCC--CEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred cCCEEEEecCCCHHHHHh----h--hCeeeeeeccCC-CCC--CeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 578999999998753221 0 111111111100 011 1111222222233444444444457889999999999
Q ss_pred hHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCC-----CCChhHHHH
Q 011901 356 DADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL-----PNTSETFVH 429 (475)
Q Consensus 356 ~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~-----p~~~~~~~Q 429 (475)
.++.+++.|.+ ++++..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++. |.+..+|+|
T Consensus 451 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQ 530 (664)
T 1c4o_A 451 MAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 530 (664)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHH
T ss_pred HHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHH
Confidence 99999999975 478889999999999999999999999999999999999999999999999998 889999999
Q ss_pred hhhccCCCCCCCeEEEEecchhHHHHHH
Q 011901 430 RTGRTGRAGKKGSAILIYTDQQARQVKS 457 (475)
Q Consensus 430 ~~GR~gR~~~~g~~~~~~~~~~~~~~~~ 457 (475)
|+||+||.+ +|.|++++++.+......
T Consensus 531 r~GRagR~~-~G~~i~~~~~~~~~~~~~ 557 (664)
T 1c4o_A 531 TIGRAARNA-RGEVWLYADRVSEAMQRA 557 (664)
T ss_dssp HHGGGTTST-TCEEEEECSSCCHHHHHH
T ss_pred HHCccCcCC-CCEEEEEEcCCCHHHHHH
Confidence 999999985 899999998865543333
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=4.4e-27 Score=238.73 Aligned_cols=128 Identities=21% Similarity=0.283 Sum_probs=107.5
Q ss_pred cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.|+ .|+++|..+++.++.|+ +.++.||||||++|.+|++..... |.+++|++||++||.|+++++..+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---------G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---------GKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---------CSCCEEEESSHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 577 89999999999999987 999999999999999999654432 567999999999999999998887
Q ss_pred CC--CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHH-HHHHHhCC------CCCC---CccEEEEecccccc
Q 011901 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLS---EVQFVVLDEADQML 258 (475)
Q Consensus 197 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~---~~~~vViDE~H~~~ 258 (475)
+. ++++.+++||.+... +....+++|+||||+.| ++++..+. +.++ +++++|+||+|+++
T Consensus 144 ~~~lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 144 YRGLGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHTTTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHhcCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 54 677888888877433 33445699999999999 78887753 4567 89999999999976
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=3.2e-27 Score=243.82 Aligned_cols=170 Identities=19% Similarity=0.342 Sum_probs=128.0
Q ss_pred CCCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecCh
Q 011901 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTK 354 (475)
Q Consensus 275 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~ 354 (475)
...|++++|||+++..... .... +........ ... ..............++..+......+.++||||++.
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~--~~~~~r~~~-l~~--p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEM--VEQIIRPTG-LLD--PLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSC--EEECCCTTC-CCC--CEEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCe--eeeeecccC-CCC--CeEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 3578999999998754222 1111 111111000 001 112222222233344455555455678999999999
Q ss_pred hhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCC-----CCChhHHH
Q 011901 355 RDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL-----PNTSETFV 428 (475)
Q Consensus 355 ~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~-----p~~~~~~~ 428 (475)
..++.+++.|.+ ++++..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++. |.+..+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 999999999975 578899999999999999999999999999999999999999999999999998 89999999
Q ss_pred HhhhccCCCCCCCeEEEEecchhHHH
Q 011901 429 HRTGRTGRAGKKGSAILIYTDQQARQ 454 (475)
Q Consensus 429 Q~~GR~gR~~~~g~~~~~~~~~~~~~ 454 (475)
||+||+||. .+|.|++++++.+...
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~ 560 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSM 560 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHH
Confidence 999999998 7899999999865543
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=5.2e-27 Score=199.88 Aligned_cols=154 Identities=36% Similarity=0.664 Sum_probs=142.8
Q ss_pred cCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCC
Q 011901 316 DGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRF 394 (475)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 394 (475)
..+.++.+......|...+..+++.. .++++||||++.+.++.+++.|.+ ++.+..+||+|++.+|..+++.|++|+.
T Consensus 8 ~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 86 (163)
T 2hjv_A 8 RNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEY 86 (163)
T ss_dssp CCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred ccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 44667777777788999999988875 567999999999999999999975 5889999999999999999999999999
Q ss_pred cEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccccc
Q 011901 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 395 ~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (475)
+|||||+++++|+|+|++++||++++|+++..|.||+||+||.|++|.|++++++.+...++.|++.++.++++++
T Consensus 87 ~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 87 RYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp SEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred eEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988764
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=8.8e-27 Score=200.05 Aligned_cols=155 Identities=24% Similarity=0.476 Sum_probs=141.3
Q ss_pred cCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCC
Q 011901 316 DGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRF 394 (475)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 394 (475)
..+.++++.....+|...+..+++.. .++++||||++.+.++.+++.|.+ ++++..+||+|++.+|..+++.|++|+.
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 34666777777788999999998876 567999999999999999999975 5889999999999999999999999999
Q ss_pred cEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecch-hHHHHHHHHHHhCCCcccccC
Q 011901 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ-QARQVKSIERDVGCRFTQVTS 471 (475)
Q Consensus 395 ~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~ 471 (475)
+|||||+++++|+|+|++++||++|+|+++..|.||+||+||.|+.|.|++++++. +...+..|++.++..++++|.
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 99999999999999999999999999999999999999999999999999999875 568899999999999998873
No 79
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=1.2e-26 Score=198.11 Aligned_cols=153 Identities=29% Similarity=0.562 Sum_probs=135.3
Q ss_pred eeEEEEeccCcc-chHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCc
Q 011901 318 ISLYSIATSMYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395 (475)
Q Consensus 318 ~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 395 (475)
+.++++.....+ |...+..+++.. .++++||||++.+.++.++..|.+ ++.+..+||+|++.+|..+++.|++|+.+
T Consensus 4 i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 4 IKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred cEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 445555555555 888999988876 567999999999999999999975 58899999999999999999999999999
Q ss_pred EEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCcccccC
Q 011901 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVTS 471 (475)
Q Consensus 396 vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (475)
|||||+++++|+|+|++++||++|.|++..+|.||+||+||.|++|.|++++++.+...+..+++.++..++++|.
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 158 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCS
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998874
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.8e-26 Score=199.11 Aligned_cols=158 Identities=30% Similarity=0.516 Sum_probs=138.4
Q ss_pred ccCeeEEEEeccCcc-chHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcC
Q 011901 315 ADGISLYSIATSMYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDG 392 (475)
Q Consensus 315 ~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g 392 (475)
...+.++++.....+ |...+..+++.. .++++||||++++.++.++..|.+ ++.+..+||+|++.+|..+++.|++|
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 345666666666544 888888888765 457999999999999999999975 57899999999999999999999999
Q ss_pred CCcEEEecCccccCCCCCCCCEEEEcCCC------CChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCc
Q 011901 393 RFNILIATDVAARGLDVPNVDLIIHYELP------NTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRF 466 (475)
Q Consensus 393 ~~~vlvaT~~~~~Gidi~~~~~vi~~~~p------~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (475)
+.+|||||+++++|+|+|++++||++|.| .+..+|.||+||+||.|+.|.|++++++.+...+..+++.++..+
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred ccccCCC
Q 011901 467 TQVTSFS 473 (475)
Q Consensus 467 ~~~~~~~ 473 (475)
++++.-+
T Consensus 164 ~~~~~~~ 170 (175)
T 2rb4_A 164 KQLNAED 170 (175)
T ss_dssp EEECSSC
T ss_pred cccCCch
Confidence 9887543
No 81
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=4.3e-26 Score=202.63 Aligned_cols=151 Identities=41% Similarity=0.786 Sum_probs=137.5
Q ss_pred EEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEE
Q 011901 320 LYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (475)
Q Consensus 320 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 398 (475)
...+......|...+..+++.. .++++||||++++.++.+++.|.+ ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 8 ~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlv 86 (212)
T 3eaq_A 8 EEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLV 86 (212)
T ss_dssp CEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEE
T ss_pred eeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEE
Confidence 3445566678899999998865 467999999999999999999964 58899999999999999999999999999999
Q ss_pred ecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCcccccC
Q 011901 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVTS 471 (475)
Q Consensus 399 aT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (475)
||+++++|+|+|++++||+++.|++...|.||+||+||.|++|.|++++++.+...+..+++.++..++.++.
T Consensus 87 aT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 159 (212)
T 3eaq_A 87 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 159 (212)
T ss_dssp ECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCC
T ss_pred ecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988754
No 82
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=9.6e-27 Score=202.10 Aligned_cols=157 Identities=35% Similarity=0.563 Sum_probs=129.3
Q ss_pred cccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcC
Q 011901 314 LADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDG 392 (475)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g 392 (475)
....+.+++......+|...+..+++....++++||||++...++.++..|.. ++.+..+||+|++.+|..+++.|++|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 44567777777778889999999998876778999999999999999999965 58899999999999999999999999
Q ss_pred CCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCccccc
Q 011901 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 393 ~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (475)
+.+|||||+++++|+|+|++++||++|+|+++.+|.||+||+||.|++|.|++++++.+...++.+.+.++....++|
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 173 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 173 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCC
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876666655
No 83
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.94 E-value=2.5e-26 Score=200.23 Aligned_cols=172 Identities=22% Similarity=0.350 Sum_probs=132.8
Q ss_pred HhhcCCCcEEEecCCCccccccCeeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccc
Q 011901 295 NKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPL 373 (475)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~ 373 (475)
..++.+|..+.+.. .......+.++........|...+..++.. .++++||||++...++.+++.|.. ++.+..+
T Consensus 9 ~~~~~~p~~i~v~~--~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 9 SGVDLGTENLYFQS--MGAASLDVIQEVEYVKEEAKMVYLLECLQK--TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp ---------------------CCSEEEEEECCGGGHHHHHHHHHTT--SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccccCCCEEEEECC--CCCCCcCceEEEEEcChHHHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 34566676665432 223445667777777777888888887765 356899999999999999999964 5889999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecch-hH
Q 011901 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ-QA 452 (475)
Q Consensus 374 h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~-~~ 452 (475)
||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|+++..|.||+||+||.|++|.|++++++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976 67
Q ss_pred HHHHHHHHHhCCCccccc
Q 011901 453 RQVKSIERDVGCRFTQVT 470 (475)
Q Consensus 453 ~~~~~i~~~~~~~~~~~~ 470 (475)
..++.|++.++....++|
T Consensus 165 ~~~~~l~~~l~~~~~~~p 182 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQKVP 182 (191)
T ss_dssp HHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHccCcCC
Confidence 778888888765555554
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=2e-25 Score=207.47 Aligned_cols=153 Identities=39% Similarity=0.771 Sum_probs=137.6
Q ss_pred eeEEEEeccCccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcE
Q 011901 318 ISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNI 396 (475)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 396 (475)
+.++.+.....+|...+..+++... ++++||||++++.++.+++.|.+ ++.+..+||+|++.+|..+++.|++|+.+|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 3556677777889999999988765 77999999999999999999964 588999999999999999999999999999
Q ss_pred EEecCccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCcccccC
Q 011901 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQVTS 471 (475)
Q Consensus 397 lvaT~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (475)
||||+++++|+|+|++++||+++.|++...|.||+||+||.|++|.|++++++.+...+..+++.++..++.++.
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~ 156 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 156 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988754
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=2.5e-24 Score=192.71 Aligned_cols=166 Identities=20% Similarity=0.221 Sum_probs=119.4
Q ss_pred cCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHH-HHHHHHh
Q 011901 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ-VEKEFHE 195 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q-~~~~~~~ 195 (475)
.....|+++|.++++.++.++++++.+|||+|||++++++++..+...... ..+.+++|++|+++|+.| +.+.+.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~---~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT---TCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc---cCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 455689999999999999999999999999999999999998776543221 236679999999999999 7777877
Q ss_pred hCC-CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCC------CCCCCccEEEEecccccccCCchHHHH-
Q 011901 196 SAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA------LNLSEVQFVVLDEADQMLSVGFAEDVE- 267 (475)
Q Consensus 196 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~------~~~~~~~~vViDE~H~~~~~~~~~~~~- 267 (475)
+.. ++.+..+.|+............+++|+|+||+.|...+.... ..+.++++||+||+|++.+.++...+.
T Consensus 106 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 106 FLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp HHTTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHH
T ss_pred HhccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHH
Confidence 754 466676677665444444444568999999999999887643 456789999999999997765444432
Q ss_pred HHHHhC-------------CCCCcEEEEccC
Q 011901 268 VILERL-------------PQNRQSMMFSAT 285 (475)
Q Consensus 268 ~i~~~~-------------~~~~~~i~~SAT 285 (475)
.++... .+.+++++||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 322221 157899999998
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.85 E-value=4.5e-26 Score=195.50 Aligned_cols=141 Identities=30% Similarity=0.579 Sum_probs=130.5
Q ss_pred ccchHHHHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCccccC
Q 011901 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406 (475)
Q Consensus 328 ~~~~~~l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 406 (475)
..|...+..+++.. .++++||||++...++.+++.|.+ ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 15 ~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 93 (170)
T 2yjt_D 15 EHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARG 93 (170)
Confidence 56777787877764 457999999999999999999965 4789999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCCCcccc
Q 011901 407 LDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQV 469 (475)
Q Consensus 407 idi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (475)
+|+|++++||+++.|++...|.||+||+||.|+.|.|++++++.+...+..+++.++..++..
T Consensus 94 id~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (170)
T 2yjt_D 94 IDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKAR 156 (170)
Confidence 999999999999999999999999999999999999999999999999999999998888764
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=1.6e-22 Score=204.82 Aligned_cols=300 Identities=18% Similarity=0.237 Sum_probs=167.8
Q ss_pred CCCCCcHHHHHhhhh----HhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHH
Q 011901 118 GISKLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~----i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 193 (475)
|+ +++|+|.+++.. +..++++++++|||+|||++|++|++.. +.+++|++||++|+.|+.+++
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------------TCEEEEEESCHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------------CCcEEEEcCCHHHHHHHHHHH
Confidence 45 799999998764 4578899999999999999999998753 567999999999999999999
Q ss_pred HhhCCCCceEEEEcCcch--------h-H--------------------------------------HHHHhhcCCcEEE
Q 011901 194 HESAPSLDTICVYGGTPI--------S-H--------------------------------------QMRALDYGVDAVV 226 (475)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~--------~-~--------------------------------------~~~~~~~~~~Ilv 226 (475)
..+ ++++..+.|.... . . ..+.....++|+|
T Consensus 72 ~~l--~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV 149 (540)
T 2vl7_A 72 KLL--GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIA 149 (540)
T ss_dssp GGG--TCCEEEC---------------------------------------------------------CTTGGGCSEEE
T ss_pred Hhc--CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEE
Confidence 875 3444443332110 0 0 0011123579999
Q ss_pred EccHHHHHHHHhCCC-------CCCCccEEEEecccccccCC--c-----hH----------------------------
Q 011901 227 GTPGRVIDLIKRNAL-------NLSEVQFVVLDEADQMLSVG--F-----AE---------------------------- 264 (475)
Q Consensus 227 ~T~~~l~~~l~~~~~-------~~~~~~~vViDE~H~~~~~~--~-----~~---------------------------- 264 (475)
+||+.|.+...++.+ .+....++|+||||.+.+.. + ..
T Consensus 150 ~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~ 229 (540)
T 2vl7_A 150 MTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYIN 229 (540)
T ss_dssp EETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred EChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 999999875443221 24567899999999984310 0 00
Q ss_pred ------------------------------HHHHHHHh-----------------------------------C-CC---
Q 011901 265 ------------------------------DVEVILER-----------------------------------L-PQ--- 275 (475)
Q Consensus 265 ------------------------------~~~~i~~~-----------------------------------~-~~--- 275 (475)
.+..+... + |.
T Consensus 230 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~ 309 (540)
T 2vl7_A 230 LLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVN 309 (540)
T ss_dssp HHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHH
T ss_pred HHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHH
Confidence 00000000 0 00
Q ss_pred ---------CCcEEEEccCCChhHHHHHHhhcCCCcEEEecCCCccccccCeeEEEEe---ccCccch----HHHHHHHH
Q 011901 276 ---------NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA---TSMYEKP----SIIGQLIT 339 (475)
Q Consensus 276 ---------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~l~~l~~ 339 (475)
...+|++|||+.+... +...+ ..... ... . ....... ....+.. ..+...+.
T Consensus 310 ~~l~~~~~~~~~~IltSATL~p~~~-~~~~f-----~~~~~----~~~-g-~~~~~~~~~l~s~f~~r~~~~~~~~~~l~ 377 (540)
T 2vl7_A 310 QLIEDALNVKTFKVLMSGTLPESLT-LTNSY-----KIVVN----ESY-G-RGEYYYCPNVTSELRKRNSNIPIYSILLK 377 (540)
T ss_dssp HHHHHHTCCSSCEEEEESSCCTTCC-CTTEE-----EEECC----CC--C-CCEEEECTTCCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHhcCccCCeEEEcccCCCCcc-cchhc-----CCchh----hee-c-CCcceeccccCCCcccccCHHHHHHHHHH
Confidence 0113777777766200 00000 00000 000 0 0000010 1111110 11222222
Q ss_pred Hh--ccCCcEEEEecChhhHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHhcCCCcEEE--ecCccccCCCCCC----
Q 011901 340 EH--AKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI--ATDVAARGLDVPN---- 411 (475)
Q Consensus 340 ~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv--aT~~~~~Gidi~~---- 411 (475)
+. ..+++++||++|...++.+.+.+.. .+ ...+|.. .+++++++.|++|. .|++ +|+.+++|||+|+
T Consensus 378 ~~~~~~~g~~lvff~S~~~~~~v~~~l~~-~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~ 452 (540)
T 2vl7_A 378 RIYENSSKSVLVFFPSYEMLESVRIHLSG-IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENL 452 (540)
T ss_dssp HHHHTCSSEEEEEESCHHHHHHHHTTCTT-SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------C
T ss_pred HHHHhCCCCEEEEeCCHHHHHHHHHHhcc-Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCccc
Confidence 22 2456899999999999999988754 22 3445554 46888999999865 5777 8899999999997
Q ss_pred CCEEEEcCCCC-Ch-----------------------------hHHHHhhhccCCCCCCCeEEEEecc
Q 011901 412 VDLIIHYELPN-TS-----------------------------ETFVHRTGRTGRAGKKGSAILIYTD 449 (475)
Q Consensus 412 ~~~vi~~~~p~-~~-----------------------------~~~~Q~~GR~gR~~~~g~~~~~~~~ 449 (475)
+++||+++.|. ++ ..+.|.+||+.|...+--++++.++
T Consensus 453 ~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 453 FESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred ccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 88999999885 22 1245999999997555445555554
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=183.74 Aligned_cols=183 Identities=20% Similarity=0.261 Sum_probs=130.8
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHH
Q 011901 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (475)
Q Consensus 107 ~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La 186 (475)
++.+.+.+.......++++|.++++.+..|+++++.|+||||||..+.++++....... ...+.++++++|+++++
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~----~~~~~~~l~~~p~~~la 122 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND----RAAECNIVVTQPRRISA 122 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT----CGGGCEEEEEESSHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC----CCCceEEEEeccchHHH
Confidence 34444455555556789999999999999999999999999999988888887665421 12345899999999999
Q ss_pred HHHHHHHHhhCC-CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc-ccCCch-
Q 011901 187 KQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM-LSVGFA- 263 (475)
Q Consensus 187 ~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~-~~~~~~- 263 (475)
.|+++.+...+. .+...+.++. .........+++|+|+||+++.+.+.. .++++++||+||+|++ .+.++.
T Consensus 123 ~q~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 123 VSVAERVAFERGEEPGKSCGYSV---RFESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp HHHHHHHHHTTTCCTTSSEEEEE---TTEEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHH
T ss_pred HHHHHHHHHHhccccCceEEEee---chhhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHH
Confidence 999999887653 1111111110 001111124578999999999999876 4889999999999985 555455
Q ss_pred HHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhhcCCCc
Q 011901 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL 302 (475)
Q Consensus 264 ~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 302 (475)
..+..++... ++.|+++||||++... +...+...|.
T Consensus 197 ~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 197 VVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 3455555555 5789999999999865 5555554443
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.87 E-value=3.7e-20 Score=188.23 Aligned_cols=127 Identities=18% Similarity=0.129 Sum_probs=96.8
Q ss_pred CCcHHHHHhhhhH----hcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 121 KLFPIQKAVLEPA----MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i----~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
+++|+|.+++..+ ..++++++++|||+|||++|++|++.. +.+++|++||++|+.|+.+++..+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------------~~~v~i~~pt~~l~~q~~~~~~~l 70 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------------KPKVLFVVRTHNEFYPIYRDLTKI 70 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------------CSEEEEEESSGGGHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------------CCeEEEEcCCHHHHHHHHHHHHHH
Confidence 6999999987754 468999999999999999999999872 678999999999999999999887
Q ss_pred CC--CCceEEEEcCcch---------------------------------hHHH------------------HHhhcCCc
Q 011901 197 AP--SLDTICVYGGTPI---------------------------------SHQM------------------RALDYGVD 223 (475)
Q Consensus 197 ~~--~~~~~~~~~~~~~---------------------------------~~~~------------------~~~~~~~~ 223 (475)
.. ++++..+.|..+. .... +.....++
T Consensus 71 ~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ad 150 (551)
T 3crv_A 71 REKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKAD 150 (551)
T ss_dssp CCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCS
T ss_pred hhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCC
Confidence 43 4555655543211 0000 12234689
Q ss_pred EEEEccHHHHHHHHhCCCCC-CCccEEEEeccccccc
Q 011901 224 AVVGTPGRVIDLIKRNALNL-SEVQFVVLDEADQMLS 259 (475)
Q Consensus 224 Ilv~T~~~l~~~l~~~~~~~-~~~~~vViDE~H~~~~ 259 (475)
|+|+||+.|.+...+..+.+ ....++|+||||.+.+
T Consensus 151 IVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 151 VIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99999999998765554433 4677899999998765
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=3.5e-22 Score=186.16 Aligned_cols=153 Identities=17% Similarity=0.134 Sum_probs=120.3
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCC
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 199 (475)
.+|+++|.++++.++.+.+.+++++||+|||++++.++...+.+ .+.++++++|+++|+.||.+++.+++..
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~l~~~~~~ 183 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLF 183 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTSC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCCeEEEEECCHHHHHHHHHHHHHhccc
Confidence 37999999999999988889999999999999998877766543 1347999999999999999999998643
Q ss_pred --CceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCC
Q 011901 200 --LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (475)
Q Consensus 200 --~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~ 277 (475)
..+..++++..... ....+.+|+|+||+.+... ....+.++++||+||||++. ...+..++..+.+..
T Consensus 184 ~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~ 253 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCM 253 (282)
T ss_dssp CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCC
T ss_pred ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCC
Confidence 34555566654322 2224589999999877543 22236788999999999985 457778888887789
Q ss_pred cEEEEccCCChhH
Q 011901 278 QSMMFSATMPPWI 290 (475)
Q Consensus 278 ~~i~~SAT~~~~~ 290 (475)
+++++||||+...
T Consensus 254 ~~l~lSATp~~~~ 266 (282)
T 1rif_A 254 FKFGLSGSLRDGK 266 (282)
T ss_dssp EEEEECSSCCTTS
T ss_pred eEEEEeCCCCCcc
Confidence 9999999997653
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.82 E-value=1.7e-19 Score=162.93 Aligned_cols=139 Identities=17% Similarity=0.069 Sum_probs=109.3
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCC
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 199 (475)
.+|+++|.++++.++.+.++++++|||+|||.+++.++... +.++++++|+++|+.|+.+++.++ +
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~--~ 157 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF--G 157 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------CSCEEEEESSHHHHHHHHHHHGGG--C
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHhC--C
Confidence 57999999999999999899999999999999887766532 456999999999999999999994 5
Q ss_pred Cc-eEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCc
Q 011901 200 LD-TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (475)
Q Consensus 200 ~~-~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~ 278 (475)
.. +..+.|+.. ...+|+|+|++.+......- ..++++||+||+|++.+..+ ..++..++ ..+
T Consensus 158 ~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~----~~i~~~~~-~~~ 220 (237)
T 2fz4_A 158 EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESY----VQIAQMSI-APF 220 (237)
T ss_dssp GGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTH----HHHHHTCC-CSE
T ss_pred CCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHH----HHHHHhcc-CCE
Confidence 66 555555543 24799999999987665431 24689999999999876543 34555554 678
Q ss_pred EEEEccCCChh
Q 011901 279 SMMFSATMPPW 289 (475)
Q Consensus 279 ~i~~SAT~~~~ 289 (475)
++++||||...
T Consensus 221 ~l~LSATp~r~ 231 (237)
T 2fz4_A 221 RLGLTATFERE 231 (237)
T ss_dssp EEEEEESCC--
T ss_pred EEEEecCCCCC
Confidence 99999999763
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.79 E-value=7.7e-18 Score=172.42 Aligned_cols=104 Identities=20% Similarity=0.284 Sum_probs=71.1
Q ss_pred CCcEEEEecChhhHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHhcCCCcEEEec--CccccCCCCCC--CCEEEEcC
Q 011901 344 GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT--DVAARGLDVPN--VDLIIHYE 419 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT--~~~~~Gidi~~--~~~vi~~~ 419 (475)
+++++||+++....+.+.+.+. ..... ...+++..++..+++.|+ ++-.||+++ ..+.+|||+|+ .+.||+.+
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~-~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~ 524 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS-FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAG 524 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC-SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHH-hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEc
Confidence 5689999999999999988775 22222 344555678999999999 888899997 48999999997 78999999
Q ss_pred CCCC---h--------------------------hHHHHhhhccCCCCCCCeEEEEecch
Q 011901 420 LPNT---S--------------------------ETFVHRTGRTGRAGKKGSAILIYTDQ 450 (475)
Q Consensus 420 ~p~~---~--------------------------~~~~Q~~GR~gR~~~~g~~~~~~~~~ 450 (475)
.|.. + ..+.|.+||+-|...+--++++++++
T Consensus 525 lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 584 (620)
T 4a15_A 525 LPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584 (620)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccc
Confidence 8741 1 11259999999986655555665543
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.75 E-value=4.2e-18 Score=156.34 Aligned_cols=125 Identities=18% Similarity=0.266 Sum_probs=96.7
Q ss_pred cCccchHHHHHHHHHh-ccCCcEEEEecChhhHHHHHHHHHc--cCCcccccCCCCHHHHHHHHHHHhcC-CCc-EEEec
Q 011901 326 SMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLSAFRDG-RFN-ILIAT 400 (475)
Q Consensus 326 ~~~~~~~~l~~l~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~-vlvaT 400 (475)
....|...+..++.+. ..+.++||||++...++.+...|.+ ++.+..+||+++..+|..+++.|++| ..+ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3456778888887765 3678999999999999999999975 68899999999999999999999998 677 78899
Q ss_pred CccccCCCCCCCCEEEEcCCCCChhHHHHhhhccCCCCCCCeE--EEEecch
Q 011901 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSA--ILIYTDQ 450 (475)
Q Consensus 401 ~~~~~Gidi~~~~~vi~~~~p~~~~~~~Q~~GR~gR~~~~g~~--~~~~~~~ 450 (475)
+++++|+|++.+++||++|+||++..|.|++||++|.|+.+.+ +.+++..
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999987654 4555554
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.85 E-value=8e-09 Score=105.67 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=87.0
Q ss_pred cHHHHHhhhhHhcCCcEEEEcCCCCchh--HHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCC
Q 011901 123 FPIQKAVLEPAMQGRDMIGRARTGTGKT--LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (475)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~li~~~tGsGKT--~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 200 (475)
++.|+.+++.++.++.++++|++||||| +.++++.+..+. ...+.++++++||..+|.++.+.+......+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~-------~~~~~~vll~APTg~AA~~L~e~~~~~~~~l 223 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA-------DGERCRIRLAAPTGKAAARLTESLGKALRQL 223 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC-------SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh-------hcCCCeEEEEeCChhHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999 445555554321 1235689999999999999988776532211
Q ss_pred ceEEE-EcCcchhHHHHHhhcCC-cEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCc
Q 011901 201 DTICV-YGGTPISHQMRALDYGV-DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (475)
Q Consensus 201 ~~~~~-~~~~~~~~~~~~~~~~~-~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~ 278 (475)
..... ..+.+. . .... .++-.+|+.. .+.........++++||||++.+ + ...+..++..++...+
T Consensus 224 ~l~~~~~~~~~~--~----~~Tih~ll~~~~~~~--~~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~ 291 (608)
T 1w36_D 224 PLTDEQKKRIPE--D----ASTLHRLLGAQPGSQ--RLRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHAR 291 (608)
T ss_dssp SCCSCCCCSCSC--C----CBTTTSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTCE
T ss_pred CCCHHHHhccch--h----hhhhHhhhccCCCch--HHHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCCE
Confidence 10000 000000 0 0001 1111122211 11111122337889999999944 3 4567888999988889
Q ss_pred EEEEccC
Q 011901 279 SMMFSAT 285 (475)
Q Consensus 279 ~i~~SAT 285 (475)
++++.-.
T Consensus 292 liLvGD~ 298 (608)
T 1w36_D 292 VIFLGDR 298 (608)
T ss_dssp EEEEECT
T ss_pred EEEEcch
Confidence 8887644
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.50 E-value=2.6e-07 Score=95.57 Aligned_cols=68 Identities=24% Similarity=0.202 Sum_probs=54.6
Q ss_pred CCcHHHHHhhhhHhcCCc-EEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 121 KLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~-~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
.|.+.|.+|+..++..++ .+|+||+|||||.+..-.+.+.+ + .+.++|+++||..-+.++.+.+....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~-~--------~~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV-K--------QGLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHH-H--------TTCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHH-h--------CCCeEEEEcCchHHHHHHHHHHHhcC
Confidence 578999999999987665 79999999999987654444333 3 25679999999999999999887653
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.49 E-value=8.6e-06 Score=80.53 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=80.2
Q ss_pred HcCCCCCcHHHHHhhhhHhcC-----CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHH
Q 011901 116 RRGISKLFPIQKAVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (475)
Q Consensus 116 ~~~~~~l~~~Q~~~i~~i~~~-----~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (475)
...+..|++.|++++..++.. ..+++.|+.|||||.+. ..++..+... ....+++++||...+....
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~-------~~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST-------GETGIILAAPTHAAKKILS 91 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCCEEEEESSHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-------CCceEEEecCcHHHHHHHH
Confidence 345678999999999977532 38999999999999654 4444555431 1236999999998887766
Q ss_pred HHHHhhCCCCceEEEEcCcchhHHHHH-h-hcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHH
Q 011901 191 KEFHESAPSLDTICVYGGTPISHQMRA-L-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268 (475)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~ 268 (475)
+.+. .....+. ..... . .......+.. .....+..++++|+||++.+ -...+..
T Consensus 92 ~~~~-----~~~~T~h------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~iiiDE~~~~----~~~~~~~ 147 (459)
T 3upu_A 92 KLSG-----KEASTIH------SILKINPVTYEENVLFEQ---------KEVPDLAKCRVLICDEVSMY----DRKLFKI 147 (459)
T ss_dssp HHHS-----SCEEEHH------HHHTEEEEECSSCEEEEE---------CSCCCCSSCSEEEESCGGGC----CHHHHHH
T ss_pred hhhc-----cchhhHH------HHhccCcccccccchhcc---------cccccccCCCEEEEECchhC----CHHHHHH
Confidence 5541 1111100 00000 0 0000001100 11223567899999999975 3455666
Q ss_pred HHHhCCCCCcEEEEc
Q 011901 269 ILERLPQNRQSMMFS 283 (475)
Q Consensus 269 i~~~~~~~~~~i~~S 283 (475)
++..++...+++++.
T Consensus 148 l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 148 LLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHSCTTCEEEEEE
T ss_pred HHHhccCCCEEEEEC
Confidence 777776566665554
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.46 E-value=1.1e-06 Score=88.82 Aligned_cols=127 Identities=20% Similarity=0.217 Sum_probs=81.7
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCC
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 199 (475)
..+++.|.+++..++.+..+++.|++|||||.+. ..++..+.. .+.++++++||...+....+...
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~--------~g~~Vl~~ApT~~Aa~~L~e~~~----- 253 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES--------LGLEVGLCAPTGKAARRLGEVTG----- 253 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHHT-----
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh--------cCCeEEEecCcHHHHHHhHhhhc-----
Confidence 4699999999999999889999999999999754 334433332 35679999999999887766542
Q ss_pred CceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCcE
Q 011901 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279 (475)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~ 279 (475)
.....+. ..+..... .+..........++|||||++.+ -...+..++..++...++
T Consensus 254 ~~a~Tih---------~ll~~~~~-----------~~~~~~~~~~~~dvlIIDEasml----~~~~~~~Ll~~~~~~~~l 309 (574)
T 3e1s_A 254 RTASTVH---------RLLGYGPQ-----------GFRHNHLEPAPYDLLIVDEVSMM----GDALMLSLLAAVPPGARV 309 (574)
T ss_dssp SCEEEHH---------HHTTEETT-----------EESCSSSSCCSCSEEEECCGGGC----CHHHHHHHHTTSCTTCEE
T ss_pred ccHHHHH---------HHHcCCcc-----------hhhhhhcccccCCEEEEcCccCC----CHHHHHHHHHhCcCCCEE
Confidence 1111100 00000000 00011122446789999999976 345666777777777777
Q ss_pred EEEcc
Q 011901 280 MMFSA 284 (475)
Q Consensus 280 i~~SA 284 (475)
+++.-
T Consensus 310 ilvGD 314 (574)
T 3e1s_A 310 LLVGD 314 (574)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 76543
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.35 E-value=8.6e-06 Score=83.68 Aligned_cols=70 Identities=23% Similarity=0.291 Sum_probs=56.0
Q ss_pred CCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
...+.+.|.+|+..++.+.-.+++||+|||||.+.. .++..+.+ ..+.++++++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHT-------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHH-------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 346899999999999987779999999999997653 34444432 13567999999999999999988765
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.2e-05 Score=84.53 Aligned_cols=69 Identities=20% Similarity=0.260 Sum_probs=55.3
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
..|.+.|.+|+..++.+.-.+|+||+|||||.+.. .++..+.+. .+.++++++||...+.++.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~-~~i~~l~~~-------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLSKI-------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHH-HHHHHHHHH-------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH-HHHHHHHhC-------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 46889999999999887778999999999997654 333444331 2556999999999999999998775
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.23 E-value=1.9e-05 Score=82.96 Aligned_cols=69 Identities=23% Similarity=0.275 Sum_probs=55.6
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
..+.+.|.+|+..++.+.-.+++||+|||||.+. ..++..+.+ ..+.++++++||...+.++.+.+.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHT-------TCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHH-------cCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4689999999999988777899999999999765 344444433 13567999999999999999988765
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.02 E-value=0.00027 Score=73.22 Aligned_cols=71 Identities=14% Similarity=0.069 Sum_probs=53.8
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
..|++.|.+++.. .+..++|.|+.|||||.+..--+...+.+. .....+++++++|+..+.++.+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~-----~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVE-----NCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTS-----CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhC-----CCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4699999999984 356799999999999987655444443221 1123469999999999999999988764
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.79 E-value=8.1e-05 Score=70.89 Aligned_cols=120 Identities=16% Similarity=0.138 Sum_probs=75.7
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC--
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-- 197 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~-- 197 (475)
..|+|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++|+...|..+++.++.+.
T Consensus 162 ~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-------~~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-------SSSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 47899999999877544568999999999998766655544332 235679999999999998887776543
Q ss_pred -CC-CceEEEEcCcchhHHHHHhhcCCcEEEEc--cHHHHHHHHhCCCCCCCccEEEEeccccccc
Q 011901 198 -PS-LDTICVYGGTPISHQMRALDYGVDAVVGT--PGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 198 -~~-~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T--~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~ 259 (475)
+. +......... ....+.++..|.+.+ ++.+. -.+..++|+||+|.+.+
T Consensus 235 ~P~ll~~~~~~~~~----~~I~f~nGs~i~~lsa~~~slr---------G~~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 235 LPDFLQPGIVEWNK----GSIELDNGSSIGAYASSPDAVR---------GNSFAMIYIEDCAFIPN 287 (385)
T ss_dssp SCTTTSCCEEEECS----SEEEETTSCEEEEEECSHHHHH---------TSCCSEEEEESGGGSTT
T ss_pred ChHhhhhhhccCCc----cEEEeCCCCEEEEEECCCCCcc---------CCCCCEEEechhhhcCC
Confidence 22 1111111010 001123444554443 22221 23567899999998753
No 103
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.61 E-value=0.0005 Score=63.14 Aligned_cols=123 Identities=11% Similarity=0.065 Sum_probs=86.8
Q ss_pred cCccchHHHHHHHHHhc-cCCcEEEEecChhhHHHHHHHHH-ccCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCcc
Q 011901 326 SMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (475)
Q Consensus 326 ~~~~~~~~l~~l~~~~~-~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 403 (475)
....|..++..++.... .+.+++||+......+.+..++. +++++..+.|.....++ + -.++...+.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k----~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-A----ANDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-h----cccCCceEEEEECCC
Confidence 35678889999888764 47799999999999999999886 45777888888544321 1 124555666667766
Q ss_pred ccCCC-----CCCCCEEEEcCCCCChhHH-HHhhhccCCCC----CCCeEEEEecchhHH
Q 011901 404 ARGLD-----VPNVDLIIHYELPNTSETF-VHRTGRTGRAG----KKGSAILIYTDQQAR 453 (475)
Q Consensus 404 ~~Gid-----i~~~~~vi~~~~p~~~~~~-~Q~~GR~gR~~----~~g~~~~~~~~~~~~ 453 (475)
.-|+| ...++.||.+|..|++..= +|.+-|+.|.| ++-.++-+++....+
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 66776 6789999999999988774 89888888863 455677777765544
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.56 E-value=0.00027 Score=72.11 Aligned_cols=146 Identities=14% Similarity=0.108 Sum_probs=86.7
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCC
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 199 (475)
..|+|+|...+..+...+..++..+-|+|||.+....++..+.. ..+..+++++|+...|..+.+.++.+...
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-------~~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-------SSSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-------CCCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 35899999999887555679999999999998766555544433 23557999999999999998887766433
Q ss_pred Cc----eEEEEcCcchhHHHHHhhcCCcEEEEc--cHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhC
Q 011901 200 LD----TICVYGGTPISHQMRALDYGVDAVVGT--PGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (475)
Q Consensus 200 ~~----~~~~~~~~~~~~~~~~~~~~~~Ilv~T--~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~ 273 (475)
.. ........ ....+.++..|.+.+ |+.+. . .+.+++|+||+|.+.+. ...+..+...+
T Consensus 235 ~p~~~~~~~~~~~~----~~i~~~nGs~i~~~s~~~~~lr----G-----~~~~~~iiDE~~~~~~~--~~l~~~~~~~l 299 (592)
T 3cpe_A 235 LPDFLQPGIVEWNK----GSIELDNGSSIGAYASSPDAVR----G-----NSFAMIYIEDCAFIPNF--HDSWLAIQPVI 299 (592)
T ss_dssp SCTTTSCCEEEECS----SEEEETTSCEEEEEECCHHHHH----H-----SCCSEEEEETGGGCTTH--HHHHHHHHHHH
T ss_pred ChHhhccccccCCc----cEEEecCCCEEEEEeCCCCCcc----C-----CCcceEEEehhccCCch--hHHHHHHHHHh
Confidence 21 11110000 001123445555443 33222 1 14678999999986441 23334444334
Q ss_pred C--CCCcEEEEccCCCh
Q 011901 274 P--QNRQSMMFSATMPP 288 (475)
Q Consensus 274 ~--~~~~~i~~SAT~~~ 288 (475)
. .+.++++ ..||..
T Consensus 300 ~~~~~~~ii~-isTP~~ 315 (592)
T 3cpe_A 300 SSGRRSKIII-TTTPNG 315 (592)
T ss_dssp SSSSCCEEEE-EECCCT
T ss_pred ccCCCceEEE-EeCCCC
Confidence 3 2344444 445543
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.21 E-value=0.0021 Score=54.44 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+..+++.||+|+|||..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3677999999999999744
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.10 E-value=0.0013 Score=56.01 Aligned_cols=39 Identities=15% Similarity=-0.006 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
++-.++.|++|+|||..++-.+.... . .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~-~--------~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK-L--------GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH-H--------TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH-H--------CCCeEEEEeecc
Confidence 45578999999999976543333222 1 256788888873
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.98 E-value=0.0035 Score=60.45 Aligned_cols=106 Identities=16% Similarity=0.147 Sum_probs=62.9
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh
Q 011901 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (475)
.++.|+.|||||.... .+.+ ....++++||++++..+.+.+.+....
T Consensus 164 ~~I~G~aGsGKTt~I~-----~~~~---------~~~~lVlTpT~~aa~~l~~kl~~~~~~------------------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEIL-----SRVN---------FEEDLILVPGRQAAEMIRRRANASGII------------------- 210 (446)
T ss_dssp EEEEECTTSCHHHHHH-----HHCC---------TTTCEEEESCHHHHHHHHHHHTTTSCC-------------------
T ss_pred EEEEcCCCCCHHHHHH-----HHhc---------cCCeEEEeCCHHHHHHHHHHhhhcCcc-------------------
Confidence 7899999999997432 1111 123699999999999988887543100
Q ss_pred hcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccC
Q 011901 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 219 ~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 285 (475)
.....-|.|.+.++. ..........+++||||+-.+ + ...+..++...+. .+++++.-+
T Consensus 211 -~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~-~---~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 -VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML-H---TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp -CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS-C---HHHHHHHHHHTTC-SEEEEEECT
T ss_pred -ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC-C---HHHHHHHHHhCCC-CEEEEecCc
Confidence 001223667665442 222222234789999999854 2 2334445555544 556665544
No 108
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.0039 Score=57.70 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKII 162 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~ 162 (475)
+.++++.||+|+|||.+. -.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 357999999999999755 34444443
No 109
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.84 E-value=0.00068 Score=55.48 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+..+++.|++|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999743
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.84 E-value=0.0015 Score=55.77 Aligned_cols=39 Identities=15% Similarity=-0.034 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
|+=.++.|++|||||...+-.+.... ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~---------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK---------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH---------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH---------HCCCEEEEEEecc
Confidence 34578899999999975543333332 1367799998873
No 111
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.83 E-value=0.015 Score=50.56 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=26.0
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEcc
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 284 (475)
....++++||+|.+... ....+..++...+.+..+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45678999999987543 34455566666555555555543
No 112
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.81 E-value=0.0039 Score=64.65 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=54.4
Q ss_pred CCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC
Q 011901 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 198 (475)
.|++-|.+++... +..++|.|+.|||||.+..--+...+.+.. .....+++++.|+..+.++.+++.+..+
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 5889999999863 568999999999999876555544443311 1234699999999999999999988754
No 113
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.78 E-value=0.0062 Score=56.91 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+..+++.||+|+|||..+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 357999999999999754
No 114
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.77 E-value=0.0035 Score=54.80 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=50.0
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (475)
|.-.++.|++|+|||...+-.+.... . .+.+++++.|...-. - .......+ | ..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~-~--------~g~kVli~~~~~d~r--~---~~~i~srl------G-~~----- 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE-Y--------ADVKYLVFKPKIDTR--S---IRNIQSRT------G-TS----- 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH-H--------TTCCEEEEEECCCGG--G---CSSCCCCC------C-CS-----
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH-h--------cCCEEEEEEeccCch--H---HHHHHHhc------C-CC-----
Confidence 44578899999999976544433332 2 256688887754210 0 00011111 1 00
Q ss_pred HHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011901 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~ 258 (475)
-..+-+.+...+...+.... .-...++|||||++.+.
T Consensus 66 -----~~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 -----LPSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp -----SCCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred -----ccccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 01233456666666665432 13457899999999753
No 115
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.63 E-value=0.0023 Score=60.23 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=24.7
Q ss_pred CcHHHHHhhhhHh----cCC---cEEEEcCCCCchhHHHH
Q 011901 122 LFPIQKAVLEPAM----QGR---DMIGRARTGTGKTLAFG 154 (475)
Q Consensus 122 l~~~Q~~~i~~i~----~~~---~~li~~~tGsGKT~~~~ 154 (475)
+.|||.+++..+. +++ .+++.||.|+|||..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4688888877654 332 38999999999997553
No 116
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.62 E-value=0.0035 Score=54.02 Aligned_cols=38 Identities=11% Similarity=0.028 Sum_probs=25.8
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHH
Q 011901 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 184 (475)
=.++.|++|||||..++--+..... .+.+++++.|...
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~---------~g~kVli~k~~~d 67 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQF---------AKQHAIVFKPCID 67 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH---------TTCCEEEEECC--
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH---------CCCEEEEEEeccC
Confidence 3678999999999765544444432 3677999998753
No 117
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.60 E-value=0.011 Score=57.81 Aligned_cols=41 Identities=15% Similarity=0.353 Sum_probs=23.8
Q ss_pred CccEEEEecccccccC-CchHHHHHHHHhC-CCCCcEEEEccC
Q 011901 245 EVQFVVLDEADQMLSV-GFAEDVEVILERL-PQNRQSMMFSAT 285 (475)
Q Consensus 245 ~~~~vViDE~H~~~~~-~~~~~~~~i~~~~-~~~~~~i~~SAT 285 (475)
+.+++++||+|.+.+. .....+..++..+ ....++++.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 5678999999998753 1233344444433 334555554443
No 118
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0046 Score=58.83 Aligned_cols=55 Identities=15% Similarity=0.007 Sum_probs=35.3
Q ss_pred ccCCcccCCCCCHHHHHHHHHcCC---CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHH
Q 011901 96 DEGLDISKLDISQDIVAALARRGI---SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~---~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
.|..+|++.+=-++.++.+.+.-. ..|--++.-.+ ...+.+|+.||+|+|||+.+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 466788898877777777765421 12222222221 22367999999999999854
No 119
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.37 E-value=0.023 Score=54.28 Aligned_cols=18 Identities=33% Similarity=0.281 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+..+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999754
No 120
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.0082 Score=58.02 Aligned_cols=55 Identities=16% Similarity=0.070 Sum_probs=35.3
Q ss_pred ccCCcccCCCCCHHHHHHHHHcCCC---CCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHH
Q 011901 96 DEGLDISKLDISQDIVAALARRGIS---KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~---~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
.|..+|++.+=-+++++.|.+.-.. .+--++.-. +..-+.+|+.||+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 4667888988788888888754211 111111111 122367999999999999754
No 121
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.30 E-value=0.0042 Score=55.04 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+..+++.||+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3567999999999999744
No 122
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0033 Score=60.72 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=37.8
Q ss_pred CccCCcccCCCCCHHHHHHHHHcC---CCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHH
Q 011901 95 KDEGLDISKLDISQDIVAALARRG---ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~---~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
..+..+|++++--++.++.+...- ...+--++...++ ..+.+|+.||+|+|||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 456778999988888888887532 2223333333222 2367999999999999854
No 123
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.29 E-value=0.014 Score=53.28 Aligned_cols=55 Identities=13% Similarity=0.098 Sum_probs=31.7
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhh--HhcCCcEEEEcCCCCchhHHH
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP--AMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~--i~~~~~~li~~~tGsGKT~~~ 153 (475)
+...|+++.-.+..++.+...-.. +. ...+.+.. +.....+++.||+|+|||..+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVEL-PL-KHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHH-HH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH-Hh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 345566776667777766543211 00 01111222 124467999999999999754
No 124
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.20 E-value=0.0099 Score=62.10 Aligned_cols=71 Identities=15% Similarity=0.100 Sum_probs=53.2
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
..|++.|.+++... +..++|.|+.|||||.+..--+...+.+. .....++|+++.|+..|.++.+++....
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~-----~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEK-----HVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTT-----CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhc-----CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 46999999999863 46899999999999987655554444321 0123469999999999999988887653
No 125
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.18 E-value=0.017 Score=50.26 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=27.4
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
|+=.++.|++|||||...+--+.... ..+.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~---------~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ---------IAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH---------TTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH---------HCCCeEEEEeecC
Confidence 44578899999999976554444433 3477799998864
No 126
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.18 E-value=0.0098 Score=60.36 Aligned_cols=113 Identities=20% Similarity=0.231 Sum_probs=72.8
Q ss_pred CCcHHHHHhhhhHhc--CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC
Q 011901 121 KLFPIQKAVLEPAMQ--GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~--~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 198 (475)
.+|..|.+++..+.. ....++.|+-|.|||.+..+.+- .+ ...+++.+|+.+-+....+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~-----------~~~~~vtAP~~~a~~~l~~~~~~--- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RI-----------AGRAIVTAPAKASTDVLAQFAGE--- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HS-----------SSCEEEECSSCCSCHHHHHHHGG---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HH-----------HhCcEEECCCHHHHHHHHHHhhC---
Confidence 589999999998886 33579999999999965444332 32 11369999998777654443321
Q ss_pred CCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhCCCCCc
Q 011901 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (475)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~ 278 (475)
.|-+..|+.+.. .....+++|||||=.+ -...+..++.. ..
T Consensus 240 ------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI----p~pll~~ll~~----~~ 280 (671)
T 2zpa_A 240 ------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI----PAPLLHQLVSR----FP 280 (671)
T ss_dssp ------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS----CHHHHHHHHTT----SS
T ss_pred ------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC----CHHHHHHHHhh----CC
Confidence 122345554331 1446889999999975 34445555442 23
Q ss_pred EEEEccCCC
Q 011901 279 SMMFSATMP 287 (475)
Q Consensus 279 ~i~~SAT~~ 287 (475)
.++||.|..
T Consensus 281 ~v~~~tTv~ 289 (671)
T 2zpa_A 281 RTLLTTTVQ 289 (671)
T ss_dssp EEEEEEEBS
T ss_pred eEEEEecCC
Confidence 577777864
No 127
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.11 E-value=0.03 Score=50.72 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46999999999999755
No 128
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.04 E-value=0.0053 Score=52.04 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=24.2
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCC
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (475)
++=.++.|++|||||.-.+-.+-....+ +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEccc
Confidence 3447889999999995433333222221 4668888875
No 129
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.0068 Score=58.58 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=34.3
Q ss_pred ccCCcccCCCCCHHHHHHHHHcC---CCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHH
Q 011901 96 DEGLDISKLDISQDIVAALARRG---ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~---~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
.+..+|++++=-++.++.+...- +..+--++...+ ...+.+|+.||+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHH
Confidence 56777888876777777766431 112222222211 12367999999999999854
No 130
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.02 E-value=0.035 Score=47.60 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+++.|++|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999754
No 131
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.01 E-value=0.0097 Score=65.98 Aligned_cols=126 Identities=19% Similarity=0.151 Sum_probs=75.7
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCC
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 199 (475)
.++|+-|.+++..- +.+++|.|..|||||.+.+--++..+.+... .-...+++++++|+..+..+.+.+......
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~---~~~~~~il~~Tft~~aa~e~~~ri~~~l~~ 83 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN---PIDVDRLLVVTFTNASAAEMKHRIAEALEK 83 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS---CCCGGGEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC---CCCccceEEEeccHHHHHHHHHHHHHHHHH
Confidence 36899999999865 7799999999999998776555555543110 112346999999999999999888764321
Q ss_pred CceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhC-C--CCCCCccEEEEeccc
Q 011901 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-A--LNLSEVQFVVLDEAD 255 (475)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-~--~~~~~~~~vViDE~H 255 (475)
.-. ..... ....+.+..-..+-|+|.+.|...+.+. . ..+ +.++-++||..
T Consensus 84 ~~~---~~~~~-~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~-~~~f~~~d~~~ 137 (1232)
T 3u4q_A 84 ELV---QRPGS-LHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDL-DPGFRIADQTE 137 (1232)
T ss_dssp HHH---HSTTC-HHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTC-CTTCEECCHHH
T ss_pred Hhh---cCcch-HHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCC-CCCCeeCCHHH
Confidence 000 00000 1111111222456789988886544332 1 122 22234778755
No 132
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.00 E-value=0.014 Score=50.26 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 184 (475)
|.=.++.|+.|||||...+-.+ ..... .+.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~-~r~~~--------~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRL-RRGIY--------AKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHHHH--------TTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHH-HHHHH--------cCCceEEEEeccC
Confidence 3446889999999996444333 33221 2566899988653
No 133
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.011 Score=56.60 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=35.7
Q ss_pred CccCCcccCCCCCHHHHHHHHHc---CCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHH
Q 011901 95 KDEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~---~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
..+..+|++++=-++.++.+.+. .+..+--++...++ ..+.+|+.||+|+|||+.+
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHHH
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHHH
Confidence 35677888987667777777653 12223333332221 2367999999999999854
No 134
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.90 E-value=0.065 Score=51.70 Aligned_cols=55 Identities=11% Similarity=0.273 Sum_probs=36.3
Q ss_pred CCCccEEEEecccccc---cCCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhh
Q 011901 243 LSEVQFVVLDEADQML---SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~---~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 297 (475)
..+++++|+|++-+.. +......+..+.....+..-+++++|+........+..+
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 3578899999998653 223456666666666666667888888665544444444
No 135
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.011 Score=57.00 Aligned_cols=56 Identities=11% Similarity=0.059 Sum_probs=34.7
Q ss_pred CccCCcccCCCCCHHHHHHHHHcC---CCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHH
Q 011901 95 KDEGLDISKLDISQDIVAALARRG---ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~---~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
..+..+|++.+=-+..++.+...- ...+--++...+ ...+.+|+.||+|+|||+.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHH
Confidence 346678888877777777776531 111222222221 22356999999999999855
No 136
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.86 E-value=0.035 Score=47.08 Aligned_cols=137 Identities=15% Similarity=0.014 Sum_probs=72.3
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHH-HHHHHHHHHHhhCCCCceEEEEcCcch-hHH
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE-LAKQVEKEFHESAPSLDTICVYGGTPI-SHQ 214 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~-La~q~~~~~~~~~~~~~~~~~~~~~~~-~~~ 214 (475)
..+++..++|.|||.+++-.++..+- .|.+++++.=.+. ....-.+-+..+ ++.... .|.... ..+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g---------~G~rV~~vQF~Kg~~~~gE~~~l~~L--~v~~~~-~g~gf~~~~~ 96 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG---------HGKNVGVVQFIKGTWPNGERNLLEPH--GVEFQV-MATGFTWETQ 96 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH---------TTCCEEEEESSCCSSCCHHHHHHGGG--TCEEEE-CCTTCCCCGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH---------CCCeEEEEEeeCCCCCccHHHHHHhC--CcEEEE-cccccccCCC
Confidence 46999999999999988888777763 3788888843321 000001112222 121111 111000 000
Q ss_pred --HHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCC--chHHHHHHHHhCCCCCcEEEEccCCChhH
Q 011901 215 --MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--FAEDVEVILERLPQNRQSMMFSATMPPWI 290 (475)
Q Consensus 215 --~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~--~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 290 (475)
...... --..|..... .+.-..+++||+||.-.....+ -...+..++...+....+|+.+--+++.+
T Consensus 97 ~~~~~~~~-------a~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l 167 (196)
T 1g5t_A 97 NREADTAA-------CMAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDI 167 (196)
T ss_dssp GHHHHHHH-------HHHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHH
T ss_pred CcHHHHHH-------HHHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHH
Confidence 000000 0111111111 1223578999999997543333 34567777777777777777777777765
Q ss_pred HHHH
Q 011901 291 RSLT 294 (475)
Q Consensus 291 ~~~~ 294 (475)
...+
T Consensus 168 ~e~A 171 (196)
T 1g5t_A 168 LDLA 171 (196)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 5544
No 137
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.84 E-value=0.044 Score=45.95 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
..++++.||+|+|||..+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 357999999999999754
No 138
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.84 E-value=0.028 Score=52.20 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=25.1
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
...+++|+||+|.+... ....+..+++..+....+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45779999999997543 3344555566655555555544
No 139
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.67 E-value=0.19 Score=42.08 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.++++.|++|+|||..+
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 57999999999999754
No 140
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.64 E-value=0.027 Score=52.03 Aligned_cols=17 Identities=35% Similarity=0.278 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.++++.||+|+|||..+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999755
No 141
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.59 E-value=0.044 Score=51.01 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=31.8
Q ss_pred ccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhH-----hcCCcEEEEcCCCCchhHHH
Q 011901 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPA-----MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i-----~~~~~~li~~~tGsGKT~~~ 153 (475)
.+...|+++.-.+..++.+...-. .|.. .+.. ...+++++.||+|+|||..+
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 345567777777777777765321 0111 1111 12356999999999999755
No 142
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.58 E-value=0.044 Score=50.62 Aligned_cols=19 Identities=16% Similarity=0.280 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCchhHHHH
Q 011901 136 GRDMIGRARTGTGKTLAFG 154 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~ 154 (475)
+.++++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999997553
No 143
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.45 E-value=0.041 Score=52.51 Aligned_cols=17 Identities=35% Similarity=0.237 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+++.||+|+|||..+
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46999999999999754
No 144
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.32 E-value=0.058 Score=56.36 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=75.7
Q ss_pred ccCccchHH-HHHHHHHhccCCcEEEEecChhhHHHHHHHHHc-----cCCcccccCCCCHHHHHHHHHHHhcCCCcEEE
Q 011901 325 TSMYEKPSI-IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (475)
Q Consensus 325 ~~~~~~~~~-l~~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 398 (475)
.....|... +..++.....+.+++|.+|+..-+...++.+.+ ++.+..+||+++..++...++.+.+|+.+|+|
T Consensus 397 ~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvV 476 (780)
T 1gm5_A 397 DVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVI 476 (780)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 344445433 333444445678999999999988888777653 36788999999999999999999999999999
Q ss_pred ecC-ccccCCCCCCCCEEEEcCCCC
Q 011901 399 ATD-VAARGLDVPNVDLIIHYELPN 422 (475)
Q Consensus 399 aT~-~~~~Gidi~~~~~vi~~~~p~ 422 (475)
+|. .+...+++.+++.||.-....
T Consensus 477 gT~~ll~~~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 477 GTHALIQEDVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp ECTTHHHHCCCCSCCCEEEEESCCC
T ss_pred ECHHHHhhhhhccCCceEEecccch
Confidence 996 455678888999988766655
No 145
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.24 E-value=0.033 Score=53.21 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.||+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999744
No 146
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.23 E-value=0.055 Score=50.64 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999754
No 147
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.22 E-value=0.035 Score=51.70 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=24.5
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
...+++++||+|.+........+..+++..+.+..+|+.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3678999999999751113344555555544455555533
No 148
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.16 E-value=0.073 Score=50.97 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
.+++++.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999755
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.14 E-value=0.12 Score=45.32 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.||+|+|||..+
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999744
No 150
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.09 E-value=0.046 Score=53.32 Aligned_cols=17 Identities=41% Similarity=0.388 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.+++++||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 36999999999999754
No 151
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.09 E-value=0.075 Score=50.51 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+..+++.|++|+|||..+
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999744
No 152
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.06 E-value=0.11 Score=48.90 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=25.9
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEcc
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 284 (475)
...+++++||+|.+... ....+..+++..+....+++.+.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 35679999999987543 33455566666655555665543
No 153
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.85 E-value=0.033 Score=51.05 Aligned_cols=17 Identities=18% Similarity=0.095 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999754
No 154
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.69 E-value=0.47 Score=44.44 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=28.7
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEccCCC
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 287 (475)
.+.+++|+||+|.+ +......+...++..+.+..+++.|-.+.
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 46779999999994 33345566677777666666666665443
No 155
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.65 E-value=0.068 Score=53.29 Aligned_cols=42 Identities=10% Similarity=0.129 Sum_probs=26.2
Q ss_pred CCccEEEEecccccccCC--chHHHHHHHHhCCCCCcEEEEccCCC
Q 011901 244 SEVQFVVLDEADQMLSVG--FAEDVEVILERLPQNRQSMMFSATMP 287 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~--~~~~~~~i~~~~~~~~~~i~~SAT~~ 287 (475)
....+|++||+|.+.... ....+..+++.. ...+++.+++..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 346789999999986542 224445555543 345777777643
No 156
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.60 E-value=0.18 Score=45.04 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
.+.+++.||+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999754
No 157
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=94.40 E-value=0.19 Score=49.25 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=40.6
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCC
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 200 (475)
.+....+.|-+|||||++.. .++.. .+..+|+|+|+...|.|++++++.+++..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a-~l~~~-----------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~ 66 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVA-EIAER-----------HAGPVVLIAPDMQNALRLHDEISQFTDQM 66 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHH-HHHHH-----------SSSCEEEEESSHHHHHHHHHHHHHTCSSC
T ss_pred CCCeEEEeCCCchHHHHHHH-HHHHH-----------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc
Confidence 34568899999999997442 11111 13348999999999999999999987653
No 158
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.38 E-value=0.099 Score=48.57 Aligned_cols=54 Identities=20% Similarity=0.197 Sum_probs=30.2
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCcHHHH-Hhhh-hHhcCCcEEEEcCCCCchhHHH
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLFPIQK-AVLE-PAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~-~~i~-~i~~~~~~li~~~tGsGKT~~~ 153 (475)
+...|++++-.+.+++.+.+.-. .|.+. +... .....+.+++.||+|+|||..+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 44567777666777766654210 01110 0000 0112357999999999999754
No 159
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.35 E-value=0.18 Score=47.22 Aligned_cols=39 Identities=23% Similarity=0.450 Sum_probs=26.5
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
...+++|+||+|.+... ....+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999987543 3445666667666666665544
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.32 E-value=0.18 Score=46.52 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=24.4
Q ss_pred CccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 245 ~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
...+||+||+|.+... ....+...++..+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 3779999999997543 2333455566655556566555
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.31 E-value=0.11 Score=48.05 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.1
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
++++.||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999754
No 162
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.14 E-value=0.24 Score=47.80 Aligned_cols=53 Identities=11% Similarity=0.196 Sum_probs=29.2
Q ss_pred CccEEEEecccccccC-CchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhh
Q 011901 245 EVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (475)
Q Consensus 245 ~~~~vViDE~H~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 297 (475)
++++||+|.+=+.... .....+..+.....++.-++++.||........+..+
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f 235 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAF 235 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHH
Confidence 4677888888654321 1233344455555555556777777655444444443
No 163
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.12 E-value=0.12 Score=48.72 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=22.7
Q ss_pred CCChhHHHHhhhccCCCCCCCeEEEEecchhHHHHHHHHHHhCC
Q 011901 421 PNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGC 464 (475)
Q Consensus 421 p~~~~~~~Q~~GR~gR~~~~g~~~~~~~~~~~~~~~~i~~~~~~ 464 (475)
+-+..+|.+.+..+. +. .+.++...+..+.+.+|.
T Consensus 318 ~v~~~df~~Al~~~~----ps-----~~~~~~~~~~~~~~~~~~ 352 (355)
T 2qp9_X 318 DLTIKDFLKAIKSTR----PT-----VNEDDLLKQEQFTRDFGQ 352 (355)
T ss_dssp CBCHHHHHHHHHHSC----CS-----SCHHHHHHHHHHHHHTC-
T ss_pred CccHHHHHHHHHHcC----CC-----CCHHHHHHHHHHHHHhcc
Confidence 446778877776652 22 355677778888877764
No 164
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.05 E-value=0.25 Score=43.01 Aligned_cols=19 Identities=37% Similarity=0.331 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.|.-+++.|++|+|||..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4566899999999999644
No 165
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.93 E-value=0.15 Score=47.12 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+++.||+|+|||..+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 67999999999999754
No 166
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.92 E-value=0.11 Score=54.24 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=34.5
Q ss_pred CccCCcccCCCCCHHHHHHHHHcCCCCC-cHHHHHhhhhHhcCCcEEEEcCCCCchhHHH
Q 011901 95 KDEGLDISKLDISQDIVAALARRGISKL-FPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l-~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
..+...|++++.-++.++.|...-...+ .|.+..-+ .+...+.+|+.||+|+|||+.+
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 3456678888888888888876432211 11110000 0112356999999999999754
No 167
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.88 E-value=0.17 Score=46.46 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=24.5
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
....+++|+||+|.|... -...+.+.++.-++...+++.|
T Consensus 80 ~~~~kvviIdead~lt~~-a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHH-HHHHHHHHHhCCCCCeEEEEEE
Confidence 346789999999998543 2333445555544455555544
No 168
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.85 E-value=0.49 Score=44.58 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++.+++.||+|+|||..+
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 357999999999999754
No 169
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.78 E-value=0.17 Score=49.28 Aligned_cols=114 Identities=18% Similarity=0.056 Sum_probs=54.0
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEE-EEcCcchhHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC-VYGGTPISHQ 214 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~-~~~~~~~~~~ 214 (475)
|.-+++.|++|+|||..++ -+...+.. ..+..++++.. ..-..|+..++.....++.... ..|......+
T Consensus 200 G~l~ii~G~pg~GKT~lal-~ia~~~a~-------~~g~~vl~~sl-E~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~ 270 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFAL-TIAQNAAL-------KEGVGVGIYSL-EMPAAQLTLRMMCSEARIDMNRVRLGQLTDRDF 270 (444)
T ss_dssp TCEEEEEECTTSCHHHHHH-HHHHHHHH-------TTCCCEEEEES-SSCHHHHHHHHHHHHTTCCTTTCCGGGCCHHHH
T ss_pred CcEEEEEeCCCCCHHHHHH-HHHHHHHH-------hCCCeEEEEEC-CCCHHHHHHHHHHHHcCCCHHHHhCCCCCHHHH
Confidence 3458999999999996443 33333322 12445777654 3334455555432211111100 0122221211
Q ss_pred HH------HhhcCCcEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccccC
Q 011901 215 MR------ALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (475)
Q Consensus 215 ~~------~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~ 260 (475)
.+ .+. ...+.+- |...+...+.+-.. -..+++||||..+.+...
T Consensus 271 ~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 271 SRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBCC
T ss_pred HHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCCC
Confidence 11 111 2345553 33444433322100 125789999999988643
No 170
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.59 E-value=0.2 Score=48.26 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=66.5
Q ss_pred HHHhccCCcEEEEecChhhHHHHHHHHHc----cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCc-cc---cCCCC
Q 011901 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-AA---RGLDV 409 (475)
Q Consensus 338 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-~~---~Gidi 409 (475)
+.....+.+++|.+|+++-+..+++.+.+ ++.+..++|+.+..++....+.+..|+.+|+|+|+- +. .-++.
T Consensus 58 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~ 137 (414)
T 3oiy_A 58 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 137 (414)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT
T ss_pred HHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc
Confidence 33345678999999999999999888876 568889999999999998999999999999999952 21 12556
Q ss_pred CCCCEEEEcCC
Q 011901 410 PNVDLIIHYEL 420 (475)
Q Consensus 410 ~~~~~vi~~~~ 420 (475)
.++++||.-.+
T Consensus 138 ~~~~~iViDEa 148 (414)
T 3oiy_A 138 KRFDFVFVDDV 148 (414)
T ss_dssp CCCSEEEESCH
T ss_pred ccccEEEEeCh
Confidence 68888886655
No 171
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.36 E-value=0.25 Score=48.25 Aligned_cols=115 Identities=14% Similarity=0.068 Sum_probs=53.3
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEE-EEcCcchhH
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC-VYGGTPISH 213 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~-~~~~~~~~~ 213 (475)
.|.-+++.|++|+|||..++ -+...+... .+..++++... .-..|+..++.....++.... ..|......
T Consensus 202 ~G~liiI~G~pG~GKTtl~l-~ia~~~~~~-------~g~~Vl~~s~E-~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~ 272 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFAL-NIAQNVATK-------TNENVAIFSLE-MSAQQLVMRMLCAEGNINAQNLRTGKLTPED 272 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHH-HHHHHHHHH-------SSCCEEEEESS-SCHHHHHHHHHHHHHTCCHHHHHTSCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHH-HHHHHHHHh-------CCCcEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcCCCCHHH
Confidence 34558999999999996543 333333221 13457776643 223444444321100111000 011111111
Q ss_pred HH------HHhhcCCcEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccccC
Q 011901 214 QM------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (475)
Q Consensus 214 ~~------~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~ 260 (475)
+. ..+ ...++.+- |.+.+...+.+-. .-.++++||||+.+.+...
T Consensus 273 ~~~~~~a~~~l-~~~~l~i~d~~~~s~~~i~~~~~~l~-~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 273 WGKLTMAMGSL-SNAGIYIDDTPSIRVSDIRAKCRRLK-QESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHHHHHHHH-HSSCEEEECCTTCCHHHHHHHHHHHH-TTTCCCEEEEECGGGSCCS
T ss_pred HHHHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEccHHHhccC
Confidence 11 111 12345553 3344444333211 1235889999999988743
No 172
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.27 E-value=0.13 Score=50.46 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=28.8
Q ss_pred cCCcccCCCCCHHHHHHHHHcC--CCCCcHHHHHhhhhHh--cCCcEEEEcCCCCchhHHH
Q 011901 97 EGLDISKLDISQDIVAALARRG--ISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~--~~~l~~~Q~~~i~~i~--~~~~~li~~~tGsGKT~~~ 153 (475)
+...|+++.-.++.++.+.+.- +..+. .+..+- -.+.+++.||+|+|||+.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~-----~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPS-----KFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTH-----HHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChH-----HHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 3456667665666655555321 11111 111111 1256999999999999754
No 173
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.25 E-value=0.056 Score=50.39 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=30.3
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHH
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 194 (475)
.|.-+++.|++|+|||..+ +-++..+.. .+..++|+.. ..-..|+..++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~a-l~ia~~~a~--------~g~~Vl~fSl-Ems~~ql~~Rll 94 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLM-MNMVLSALN--------DDRGVAVFSL-EMSAEQLALRAL 94 (338)
T ss_dssp TTCEEEEEECTTSCHHHHH-HHHHHHHHH--------TTCEEEEEES-SSCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHHH--------cCCeEEEEeC-CCCHHHHHHHHH
Confidence 3445899999999999644 333333322 2556777664 444555555543
No 174
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.94 E-value=0.13 Score=48.74 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=22.9
Q ss_pred CCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
....++|+||+|.+... ....+...++..+....+++.|
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 45679999999987543 2334444555544444444443
No 175
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.76 E-value=0.091 Score=42.32 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCchhHHH
Q 011901 134 MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (475)
..+.++++.|++|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45678999999999999855
No 176
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.60 E-value=0.15 Score=48.96 Aligned_cols=17 Identities=41% Similarity=0.409 Sum_probs=14.0
Q ss_pred CcEEE--EcCCCCchhHHH
Q 011901 137 RDMIG--RARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li--~~~tGsGKT~~~ 153 (475)
..+++ .|++|+|||..+
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 45888 899999999744
No 177
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.55 E-value=0.09 Score=42.23 Aligned_cols=20 Identities=5% Similarity=-0.044 Sum_probs=16.8
Q ss_pred hcCCcEEEEcCCCCchhHHH
Q 011901 134 MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (475)
..+.++++.|++|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 45678999999999999744
No 178
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.52 E-value=0.23 Score=48.94 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=27.6
Q ss_pred ccEEEEecccccccCC----------chHHHHHHHHhCCCCCcEEEEccCCCh
Q 011901 246 VQFVVLDEADQMLSVG----------FAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 246 ~~~vViDE~H~~~~~~----------~~~~~~~i~~~~~~~~~~i~~SAT~~~ 288 (475)
.+++++||+|.+.... ....+...+........++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 4689999999876531 123344555555566677777777544
No 179
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.29 E-value=4.4 Score=37.43 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=28.5
Q ss_pred cHHHHHHHHhCCCCCCCccEEEEeccccccc---CCchHHHHHHHHhCCCCCcEEEEccC
Q 011901 229 PGRVIDLIKRNALNLSEVQFVVLDEADQMLS---VGFAEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 229 ~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~---~~~~~~~~~i~~~~~~~~~~i~~SAT 285 (475)
...+...+..... .--+||+||+|.+.. ..+...+..+....+ +..++ ++++
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i-~~g~ 178 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFI-MSGS 178 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEE-EEES
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEE-EEcC
Confidence 3445555543211 244799999999764 335555665655542 34444 4444
No 180
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.28 E-value=0.35 Score=50.69 Aligned_cols=16 Identities=38% Similarity=0.281 Sum_probs=14.3
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
++++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999855
No 181
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=92.27 E-value=1.8 Score=36.37 Aligned_cols=73 Identities=18% Similarity=0.365 Sum_probs=55.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCccE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (475)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+...+...+ .+...|+|+| +.+.+ .+++.++++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~-Gldi~~v~~ 125 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK--GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK-GLDFPAIQH 125 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT-TCCCCCCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc-CCCcccCCE
Confidence 457999999999999999999887 57788888887766554333 2468999999 55544 356778888
Q ss_pred EEEec
Q 011901 249 VVLDE 253 (475)
Q Consensus 249 vViDE 253 (475)
||.-+
T Consensus 126 VI~~d 130 (191)
T 2p6n_A 126 VINYD 130 (191)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 87633
No 182
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.87 E-value=0.56 Score=42.36 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=19.2
Q ss_pred hhHhcCCcEEEEcCCCCchhHHHHH
Q 011901 131 EPAMQGRDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 131 ~~i~~~~~~li~~~tGsGKT~~~~~ 155 (475)
.-+..|.-+++.|++|||||..+..
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHH
Confidence 3455677799999999999975443
No 183
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.84 E-value=0.22 Score=56.88 Aligned_cols=47 Identities=21% Similarity=0.180 Sum_probs=33.0
Q ss_pred hhhHhc------CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHH
Q 011901 130 LEPAMQ------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 130 i~~i~~------~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
++.++. ++++++.||+|+|||..+...+.... ..|.+++++.....+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~---------~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---------REGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH---------TTTCCEEEECTTSCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH---------HcCCcEEEEEccccc
Confidence 555555 57899999999999987755544443 236778888875443
No 184
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.75 E-value=0.35 Score=52.77 Aligned_cols=83 Identities=13% Similarity=0.218 Sum_probs=66.8
Q ss_pred HHHhccCCcEEEEecChhhHHHHHHHHHc----cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCc-ccc---CCCC
Q 011901 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-AAR---GLDV 409 (475)
Q Consensus 338 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-~~~---Gidi 409 (475)
+.....+.+++|.+|+++-+..+.+.+.+ ++.+..+||+++..++....+.+.+|..+|+|+|+- +.. -++.
T Consensus 115 l~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~ 194 (1104)
T 4ddu_A 115 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 194 (1104)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHT
T ss_pred HHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcc
Confidence 33445678999999999999999999877 357889999999988888999999999999999952 211 1556
Q ss_pred CCCCEEEEcCC
Q 011901 410 PNVDLIIHYEL 420 (475)
Q Consensus 410 ~~~~~vi~~~~ 420 (475)
.+++++|.-.+
T Consensus 195 ~~l~~lViDEa 205 (1104)
T 4ddu_A 195 KRFDFVFVDDV 205 (1104)
T ss_dssp SCCSEEEESCH
T ss_pred cCcCEEEEeCC
Confidence 78899887655
No 185
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=91.68 E-value=0.37 Score=39.97 Aligned_cols=121 Identities=10% Similarity=0.089 Sum_probs=73.0
Q ss_pred CcHHHHHhhhhHhcCC--cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCC
Q 011901 122 LFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~--~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 199 (475)
-.+-|..++..++... -.++.+.-|++||...+..++ .+.+ ..|.++.+|+|+..-.....+...-...-
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~-~~a~-------~~Gr~V~vLAp~~~s~~~l~~~~~l~~~t 106 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELV-MMAR-------EQGREVQIIAADRRSQMNMKQDERLSGEL 106 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHH-HHHH-------HTTCCEEEECSTTHHHHHHSCTTTCSSCS
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHH-HHHH-------hcCeEEEEEcCchHHHHHHHhhcCcCcce
Confidence 3466888888887543 478899999999987533333 3322 24788999999987766544432211100
Q ss_pred CceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccCCchHHHHHHHHhC-CCCCc
Q 011901 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQ 278 (475)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~-~~~~~ 278 (475)
++. ..+......+..-+++||||+-.+ ...++..++... ..+.|
T Consensus 107 --------------------------~t~-----~~ll~~~~~~tp~s~lIVD~AekL----S~kE~~~Lld~A~~~naq 151 (189)
T 2l8b_A 107 --------------------------ITG-----RRQLLEGMAFTPGSTVIVDQGEKL----SLKETLTLLDGAARHNVQ 151 (189)
T ss_dssp --------------------------SST-----TTTTTTSCCCCCCCEEEEEESSSH----HHHHHHHHHHHHHHTTCC
T ss_pred --------------------------eeh-----hhhhcCCCCCCCCCEEEEechhhc----CHHHHHHHHHHHHhcCCE
Confidence 011 112223333455668999999997 445555555443 34577
Q ss_pred EEEEccC
Q 011901 279 SMMFSAT 285 (475)
Q Consensus 279 ~i~~SAT 285 (475)
+|++--+
T Consensus 152 vvll~~~ 158 (189)
T 2l8b_A 152 VLITDSG 158 (189)
T ss_dssp EEEEESS
T ss_pred EEEeCCc
Confidence 7776544
No 186
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.59 E-value=0.25 Score=49.47 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+..+++.||+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667999999999999744
No 187
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.54 E-value=0.7 Score=40.44 Aligned_cols=21 Identities=24% Similarity=0.001 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCCchhHHHHH
Q 011901 135 QGRDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~ 155 (475)
.|.-+.+.||+|+|||..+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 456689999999999975543
No 188
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.53 E-value=0.6 Score=43.05 Aligned_cols=52 Identities=13% Similarity=-0.030 Sum_probs=31.0
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.|.-+++.|++|+|||..++-.+.... . .+..++++.- ..-..|+..++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a-~--------~g~~vl~~sl-E~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMS-D--------NDDVVNLHSL-EMGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-T--------TTCEEEEEES-SSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-H--------cCCeEEEEEC-CCCHHHHHHHHHHH
Confidence 345699999999999965443333332 2 1345777664 34455555555443
No 189
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.71 E-value=1.1 Score=36.49 Aligned_cols=74 Identities=16% Similarity=0.312 Sum_probs=54.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCccE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (475)
+.++||.|+++.-+..+++.+... ++.+..++|+.+...+...+ .+...|+|+| +.+.+ .+++.++++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-Gld~~~~~~ 106 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVAAR-GIDIENISL 106 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTT-TCCCSCCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhhc-CCchhcCCE
Confidence 457999999999999999999886 57788888887766554333 2458999999 43333 456778888
Q ss_pred EEEecc
Q 011901 249 VVLDEA 254 (475)
Q Consensus 249 vViDE~ 254 (475)
||.-+.
T Consensus 107 Vi~~~~ 112 (163)
T 2hjv_A 107 VINYDL 112 (163)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 886443
No 190
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.71 E-value=0.95 Score=42.35 Aligned_cols=39 Identities=13% Similarity=0.103 Sum_probs=25.1
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCC
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (475)
.|.-+++.|++|||||..++..+.... . .+..++++.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~-~--------~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ-A--------AGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-H--------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-h--------CCCeEEEEECC
Confidence 446699999999999975544433332 2 14457777643
No 191
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.57 E-value=0.23 Score=48.27 Aligned_cols=49 Identities=14% Similarity=-0.023 Sum_probs=29.2
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 194 (475)
|.-+++.|++|+|||..++-.+. .+.. .+..+++++- ..-..|+..++.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~-~~a~--------~g~~vl~fSl-Ems~~ql~~R~~ 245 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAK-NMSD--------NDDVVNLHSL-EMGKKENIKRLI 245 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHH-HHHH--------TTCEEEEECS-SSCTTHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHH-HHHH--------cCCEEEEEEC-CCCHHHHHHHHH
Confidence 34589999999999965443333 3332 1455777654 344445555443
No 192
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.55 E-value=0.81 Score=50.21 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=75.2
Q ss_pred EEEeccCccchHHHH-HHHHHhccCCcEEEEecChhhHHHHHHHHHcc-----CCcccccCCCCHHHHHHHHHHHhcCCC
Q 011901 321 YSIATSMYEKPSIIG-QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-----YNCEPLHGDISQSQRERTLSAFRDGRF 394 (475)
Q Consensus 321 ~~~~~~~~~~~~~l~-~l~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~h~~~~~~~r~~~~~~f~~g~~ 394 (475)
.........|..... .+......+.+++|.||+..-+...++.+.+. ..+..+++..+..++...++.+.+|+.
T Consensus 628 ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~ 707 (1151)
T 2eyq_A 628 LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 707 (1151)
T ss_dssp EEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 333445556664433 23333456789999999999998888887643 457788999999999999999999999
Q ss_pred cEEEecC-ccccCCCCCCCCEEEEcCCC
Q 011901 395 NILIATD-VAARGLDVPNVDLIIHYELP 421 (475)
Q Consensus 395 ~vlvaT~-~~~~Gidi~~~~~vi~~~~p 421 (475)
+|+|+|. .+...+++.++++||.-...
T Consensus 708 dIvV~T~~ll~~~~~~~~l~lvIiDEaH 735 (1151)
T 2eyq_A 708 DILIGTHKLLQSDVKFKDLGLLIVDEEH 735 (1151)
T ss_dssp SEEEECTHHHHSCCCCSSEEEEEEESGG
T ss_pred CEEEECHHHHhCCccccccceEEEechH
Confidence 9999995 55666888888888864443
No 193
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.31 E-value=1.3 Score=46.34 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=25.4
Q ss_pred CccEEEEecccccccCC------c----hHHHHHHHHhCCCCCcEEEEccC
Q 011901 245 EVQFVVLDEADQMLSVG------F----AEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 245 ~~~~vViDE~H~~~~~~------~----~~~~~~i~~~~~~~~~~i~~SAT 285 (475)
...+|+|||+|.+.... . ..++...+..+....+++++.||
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec
Confidence 45789999999876421 1 12333444555555667777777
No 194
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.99 E-value=0.26 Score=43.57 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=17.1
Q ss_pred HhcCCcEEEEcCCCCchhHHHH
Q 011901 133 AMQGRDMIGRARTGTGKTLAFG 154 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~ 154 (475)
+..|.-+.+.||+|||||..+.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHH
Confidence 3456679999999999997443
No 195
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.85 E-value=1.9 Score=35.49 Aligned_cols=73 Identities=15% Similarity=0.212 Sum_probs=54.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCccE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (475)
+.++||.|+++..+..+++.+.+. +..+..++|+.+...+...+ .+..+|+|+| +.+. ..+++.++++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~~-~Gid~~~~~~ 105 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-----NVCA-RGIDVKQVTI 105 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-----CSCC-TTTCCTTEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----cchh-cCCCcccCCE
Confidence 568999999999999999999876 56788888887766654433 2458999999 3333 3456777888
Q ss_pred EEEec
Q 011901 249 VVLDE 253 (475)
Q Consensus 249 vViDE 253 (475)
||.-+
T Consensus 106 Vi~~d 110 (175)
T 2rb4_A 106 VVNFD 110 (175)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88533
No 196
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=89.68 E-value=1.4 Score=35.99 Aligned_cols=74 Identities=12% Similarity=0.305 Sum_probs=54.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCccE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (475)
+.+++|.|+++.-+..+++.+.+. +..+..++|+.+...+...+ .+...|+|+| +.+. ..+++.++++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~G~d~~~~~~ 101 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLLA-RGIDVQQVSL 101 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGGT-TTCCCCSCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chhh-cCCCcccCCE
Confidence 567999999999999999999876 56778888887766554333 2458999999 3333 3456778888
Q ss_pred EEEecc
Q 011901 249 VVLDEA 254 (475)
Q Consensus 249 vViDE~ 254 (475)
||.-+.
T Consensus 102 Vi~~~~ 107 (165)
T 1fuk_A 102 VINYDL 107 (165)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 876443
No 197
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.62 E-value=0.79 Score=41.98 Aligned_cols=43 Identities=9% Similarity=-0.012 Sum_probs=28.0
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (475)
-+++.||+|+|||..++-.+.. ..+. +.+..++++..-..+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~-~~~~------g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS-YMRQ------YPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH-HHHH------CTTCEEEEEESSCCCCH
T ss_pred eEEEECCCCCCHHHHHHHHHHH-HHhc------CCCceEEEEeccchhhH
Confidence 4789999999999765444433 3220 12567888887655543
No 198
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.56 E-value=0.52 Score=50.14 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.++++.||+|+|||..+
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 57999999999999744
No 199
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=89.41 E-value=0.48 Score=44.69 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
...++++.||+|+|||.++
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999855
No 200
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.27 E-value=1.2 Score=41.05 Aligned_cols=58 Identities=10% Similarity=-0.007 Sum_probs=30.9
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHH-HHHHHHHHHhh
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL-AKQVEKEFHES 196 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L-a~q~~~~~~~~ 196 (475)
|.-+++.|++|+|||..++..+.. +.... .. .+.+..++++.-...+ ..++.+.+..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~-~~~~~-~~-gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVN-VQLPP-EK-GGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH-TTSCG-GG-TCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHH-Hhccc-cc-CCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999755433322 21100 01 1124567877654432 34444444443
No 201
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.23 E-value=0.13 Score=47.13 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=31.2
Q ss_pred ccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhh-hHhcCCcEEEEcCCCCchhHHH
Q 011901 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLE-PAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~-~i~~~~~~li~~~tGsGKT~~~ 153 (475)
.+...|+++.-.+..++.+...-.. +..+...... .+..++.+++.||+|+|||..+
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~-~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQY-PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHH-HHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH-HhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 3455677776666666666542110 0000111111 1233567999999999999754
No 202
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=88.98 E-value=1.5 Score=37.69 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=54.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCccE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (475)
+.++||.|+++.-+..+++.+.+. ++.+..++|+.+...+...+ .+..+|+|+| +.+.+ .+++.++++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidi~~v~~ 102 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAAR-GLDIPQVDL 102 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTTC-SSSCCCBSE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhhc-CCCCccCcE
Confidence 457999999999999999999887 57788888988766654433 2458999999 44433 456778888
Q ss_pred EEE
Q 011901 249 VVL 251 (475)
Q Consensus 249 vVi 251 (475)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 203
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.82 E-value=0.48 Score=41.65 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=31.0
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
.|.-+++.|++|+|||..++-.+. .+.. .+..++++.- ..-..++.+.+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~-~~~~--------~~~~v~~~~~-e~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLW-NGLK--------MGEPGIYVAL-EEHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH-HHHH--------TTCCEEEEES-SSCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH-HHHh--------cCCeEEEEEc-cCCHHHHHHHHHHc
Confidence 456689999999999975443333 3222 1445677664 33345565555543
No 204
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=88.37 E-value=0.48 Score=46.00 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=31.6
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHH
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (475)
...++++.|+||||||... ..++..+.. .+..++++=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~--------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL--------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH--------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH--------CCCcEEEEeCCCchhH
Confidence 3468999999999999753 444444443 2556888888877754
No 205
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.21 E-value=0.41 Score=42.19 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=30.9
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
|.-+++.|++|+|||..++-.+...+.+ .+..++++.- ..-..++.+.+...
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~--------~~~~v~~~s~-E~~~~~~~~~~~~~ 81 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE--------YGEPGVFVTL-EERARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH--------HCCCEEEEES-SSCHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCCceeecc-cCCHHHHHHHHHHc
Confidence 3568999999999996554333333322 1333566553 44456666666544
No 206
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.87 E-value=1 Score=43.28 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=19.8
Q ss_pred HHHHHhhhhHhc--CCcEEEEcCCCCchhHH
Q 011901 124 PIQKAVLEPAMQ--GRDMIGRARTGTGKTLA 152 (475)
Q Consensus 124 ~~Q~~~i~~i~~--~~~~li~~~tGsGKT~~ 152 (475)
+.+..++..++. +.-+++.||||||||..
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 444555555543 33489999999999963
No 207
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.83 E-value=1.6 Score=45.57 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+.++++.|++|+|||..+
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 467999999999999754
No 208
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.64 E-value=0.92 Score=41.35 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
..++++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999754
No 209
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.62 E-value=0.63 Score=39.94 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=27.0
Q ss_pred CCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHH
Q 011901 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~ 152 (475)
..-+.-|..++..+..|.-+.+.||.|||||..
T Consensus 6 ~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 6 RPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred ccCCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 334556778888898888899999999999973
No 210
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.44 E-value=3.1 Score=35.58 Aligned_cols=75 Identities=15% Similarity=0.227 Sum_probs=53.9
Q ss_pred CCcEEEEecChhhHHHHHHHHHc------cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCc-c-----ccCCCCCC
Q 011901 344 GGKCIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-A-----ARGLDVPN 411 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-~-----~~Gidi~~ 411 (475)
+.+++|.||+++-++.+.+.+.+ +..+..++|+.+..+.. +.+.++..+|+|+|.- + ...++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 34899999999998888777654 35677889988765543 3445677899999952 1 23467778
Q ss_pred CCEEEEcCCC
Q 011901 412 VDLIIHYELP 421 (475)
Q Consensus 412 ~~~vi~~~~p 421 (475)
++++|.-.+.
T Consensus 159 ~~~lViDEah 168 (220)
T 1t6n_A 159 IKHFILDECD 168 (220)
T ss_dssp CCEEEEESHH
T ss_pred CCEEEEcCHH
Confidence 8888865544
No 211
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=87.15 E-value=6.5 Score=39.22 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHhhCC-CCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCc
Q 011901 172 RNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEV 246 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~ 246 (475)
.+.++||.|+++.-+..+++.+.+.++ +..+..++|+.....+...+ .+..+|+|+| +.+. ..+++.++
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~~-~GiDip~v 411 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGA-RGMDFPNV 411 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGT-SSCCCTTC
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----chhh-cCCCcccC
Confidence 467899999999999999999988755 67888888887766554433 2568999999 4444 34678889
Q ss_pred cEEEEeccc
Q 011901 247 QFVVLDEAD 255 (475)
Q Consensus 247 ~~vViDE~H 255 (475)
++||.-..-
T Consensus 412 ~~VI~~~~p 420 (563)
T 3i5x_A 412 HEVLQIGVP 420 (563)
T ss_dssp CEEEEESCC
T ss_pred CEEEEECCC
Confidence 988865543
No 212
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=87.14 E-value=0.88 Score=38.74 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCCCcHHHHHhhhhHhcC----CcEEEEcCCCCchhHHHHHHHHHH
Q 011901 108 QDIVAALARRGISKLFPIQKAVLEPAMQG----RDMIGRARTGTGKTLAFGIPILDK 160 (475)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~----~~~li~~~tGsGKT~~~~~~~l~~ 160 (475)
..+.+.|.-.++. +... ...+..+..+ +.+++.||+|+|||..+ .+++..
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHH
Confidence 4566666655543 4444 4445555544 35999999999999754 444433
No 213
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=87.09 E-value=1.5 Score=36.70 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCcc
Q 011901 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~ 247 (475)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+...+...+ .+...|+|+| +.+.. .+++.+++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~-Gldi~~~~ 116 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDISNVK 116 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT--TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-------CCCSBS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc--CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----Chhhc-CCCcccCC
Confidence 3567999999999999999999876 56778888877655443322 3568999999 33333 34577788
Q ss_pred EEEE
Q 011901 248 FVVL 251 (475)
Q Consensus 248 ~vVi 251 (475)
+||.
T Consensus 117 ~VI~ 120 (185)
T 2jgn_A 117 HVIN 120 (185)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7776
No 214
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.02 E-value=2.2 Score=35.06 Aligned_cols=75 Identities=12% Similarity=0.247 Sum_probs=54.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCccE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (475)
+.+++|.|+++.-+..+++.+... ++.+..++|+.+...+...+ .+...|+|+| +.+. ..+++.++++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~-~Gldi~~~~~ 102 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-----NLFG-RGMDIERVNI 102 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES-----SCCS-TTCCGGGCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC-----Cchh-cCcchhhCCE
Confidence 457999999999999999999886 56778888887766554333 2458999999 3332 2355677888
Q ss_pred EEEeccc
Q 011901 249 VVLDEAD 255 (475)
Q Consensus 249 vViDE~H 255 (475)
||.-+..
T Consensus 103 Vi~~d~p 109 (172)
T 1t5i_A 103 AFNYDMP 109 (172)
T ss_dssp EEESSCC
T ss_pred EEEECCC
Confidence 8864443
No 215
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=86.88 E-value=0.74 Score=45.38 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=25.1
Q ss_pred CCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHH
Q 011901 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
.+..-...-..++..+..+.++++.||+|+|||..+
T Consensus 23 ~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 333333444455556667889999999999999744
No 216
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=86.59 E-value=0.17 Score=45.80 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=28.1
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCcHHH-HHhhhhHh--cCCcEEEEcCCCCchhHHH
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q-~~~i~~i~--~~~~~li~~~tGsGKT~~~ 153 (475)
+...|++++-.+++++.+...-. .|+. .+++..+- -.+.+++.||+|+|||..+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 45567777777777777765321 1221 22333221 1244999999999999743
No 217
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.51 E-value=4.6 Score=36.61 Aligned_cols=19 Identities=21% Similarity=0.099 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++-+.+.|++|+|||..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SSEEEEEECCTTTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4455777899999999754
No 218
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=85.67 E-value=3.2 Score=36.18 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=53.6
Q ss_pred cCCcEEEEecChhhHHHHHHHHHc-----cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecC-----ccc-cCCCCCC
Q 011901 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAA-RGLDVPN 411 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidi~~ 411 (475)
.+.+++|.+|+++-+..+.+.+.+ +..+..++|+.+..+....+. . ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCccc
Confidence 356899999999998888777654 467788899988766544433 2 468999995 222 3467888
Q ss_pred CCEEEEcCCC
Q 011901 412 VDLIIHYELP 421 (475)
Q Consensus 412 ~~~vi~~~~p 421 (475)
++++|.-.+.
T Consensus 177 ~~~lViDEah 186 (242)
T 3fe2_A 177 TTYLVLDEAD 186 (242)
T ss_dssp CCEEEETTHH
T ss_pred ccEEEEeCHH
Confidence 9988865543
No 219
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.61 E-value=0.52 Score=42.14 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+.++++.|++|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4578999999999999754
No 220
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=85.29 E-value=5.9 Score=33.30 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=51.8
Q ss_pred cCCcEEEEecChhhHHHHHHHHHcc---CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecC-----ccc-cCCCCCCCC
Q 011901 343 KGGKCIVFTQTKRDADRLAHAMAKS---YNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAA-RGLDVPNVD 413 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidi~~~~ 413 (475)
.+.+++|.+|+++-+..+.+.+.+. ..+..++|+.+.......+. +..+|+|+|. .+. ..++..+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4568999999999999888888653 56777888876544433222 2468999995 222 346777888
Q ss_pred EEEEcCCC
Q 011901 414 LIIHYELP 421 (475)
Q Consensus 414 ~vi~~~~p 421 (475)
.+|.-.+.
T Consensus 147 ~iViDEah 154 (207)
T 2gxq_A 147 VAVLDEAD 154 (207)
T ss_dssp EEEEESHH
T ss_pred EEEEEChh
Confidence 88865443
No 221
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=85.01 E-value=4.7 Score=38.32 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCcc
Q 011901 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~ 247 (475)
.+.+++|.|+++.-+..+++.+.+. +..+..++|+.+...+...+ .+..+|+|+| +.+.. .+++.+++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidip~v~ 346 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDISNVK 346 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHHT-TSCCCCEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC--CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhhc-CCCcccCC
Confidence 4678999999999999999999886 56778888887766554333 2458999999 55554 45677888
Q ss_pred EEEE
Q 011901 248 FVVL 251 (475)
Q Consensus 248 ~vVi 251 (475)
+||.
T Consensus 347 ~Vi~ 350 (417)
T 2i4i_A 347 HVIN 350 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 222
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=84.72 E-value=1.9 Score=38.38 Aligned_cols=44 Identities=20% Similarity=0.106 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCCCcHHH-HHhhhhHhcCC-----cEEEEcCCCCchhHHHH
Q 011901 108 QDIVAALARRGISKLFPIQ-KAVLEPAMQGR-----DMIGRARTGTGKTLAFG 154 (475)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q-~~~i~~i~~~~-----~~li~~~tGsGKT~~~~ 154 (475)
..+.+.|.-.|+. +.+ ..++...+.++ .+++.||+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3577788777765 444 33455555543 49999999999998553
No 223
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=84.68 E-value=2.3 Score=46.94 Aligned_cols=52 Identities=21% Similarity=0.237 Sum_probs=34.0
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhC
Q 011901 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 197 (475)
-+|.|..|||||.+.+--+...+.+. ..+.+++++||.. ...+..+++....
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~------~~~~~il~lVP~q-~TFt~~~rl~~~l 55 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRA------PFGKPIIFLVPDQ-MTFLMEYELAKTP 55 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHC------TTSSCEEEECCGG-GHHHHHHHHTCCS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC------CCCCcEEEEecCc-ccHHHHHHHHHhh
Confidence 47899999999987765555444331 2346799999965 4444555555443
No 224
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=84.64 E-value=0.43 Score=44.27 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=18.4
Q ss_pred hhHhcCCcEEEEcCCCCchhHHH
Q 011901 131 EPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 131 ~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
..+..+.++++.||+|+|||..+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34445789999999999999744
No 225
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=84.50 E-value=1.6 Score=40.22 Aligned_cols=21 Identities=19% Similarity=-0.001 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCchhHHHHHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~ 156 (475)
|.-+++.|++|+|||..++-.
T Consensus 98 g~i~~i~G~~gsGKT~la~~l 118 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQS 118 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456899999999999755433
No 226
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=84.42 E-value=1.2 Score=43.91 Aligned_cols=39 Identities=23% Similarity=0.086 Sum_probs=25.8
Q ss_pred HHHHHcCCCCCcHHHHHhhhh-HhcCCcEEEEcCCCCchhHH
Q 011901 112 AALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLA 152 (475)
Q Consensus 112 ~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~ 152 (475)
..|.+.|. +++.+...+.. +..|..+++.||||||||..
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34445553 34444444443 45678899999999999973
No 227
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=84.22 E-value=0.68 Score=43.37 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=20.0
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.++.|.| ++..|.||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4556677876 777999999999876
No 228
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.13 E-value=2 Score=40.52 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
..++++.||+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999755
No 229
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=84.07 E-value=9.3 Score=38.33 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHhhCC-CCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCc
Q 011901 172 RNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEV 246 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~ 246 (475)
.+.++||.|+++.-+..+++.+.+.++ +..+..++|+.....+...+ .+..+|+|+| +.+.+ .+++.++
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~~~-GiDip~v 360 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGAR-GMDFPNV 360 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTS-SCCCTTC
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chhhc-CCCcccC
Confidence 366899999999999999999988754 67788888887766554333 2568999999 44443 4678889
Q ss_pred cEEEEeccc
Q 011901 247 QFVVLDEAD 255 (475)
Q Consensus 247 ~~vViDE~H 255 (475)
++||.-..-
T Consensus 361 ~~VI~~~~p 369 (579)
T 3sqw_A 361 HEVLQIGVP 369 (579)
T ss_dssp CEEEEESCC
T ss_pred CEEEEcCCC
Confidence 998876544
No 230
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=83.66 E-value=5.3 Score=34.52 Aligned_cols=74 Identities=14% Similarity=0.251 Sum_probs=49.7
Q ss_pred cCCcEEEEecChhhHHHHHHHHHcc-----CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecC-cc----cc--CCCCC
Q 011901 343 KGGKCIVFTQTKRDADRLAHAMAKS-----YNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-VA----AR--GLDVP 410 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-~~----~~--Gidi~ 410 (475)
.+.+++|.+|+++-+..+.+.+.+. +.+..++|+.+.......+ +..+|+|+|. .+ .. .++..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 4678999999999999888877642 5677788886544433222 4678999994 22 22 36777
Q ss_pred CCCEEEEcCCC
Q 011901 411 NVDLIIHYELP 421 (475)
Q Consensus 411 ~~~~vi~~~~p 421 (475)
+++++|.-.+.
T Consensus 171 ~~~~lViDEah 181 (236)
T 2pl3_A 171 DLQMLVLDEAD 181 (236)
T ss_dssp TCCEEEETTHH
T ss_pred cccEEEEeChH
Confidence 88888865443
No 231
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=83.62 E-value=2.2 Score=39.87 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
|.-+++.||+|||||..+ +.++..+.. .+..++++.....+
T Consensus 61 G~i~~I~GppGsGKSTLa-l~la~~~~~--------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLA-LHAIAEAQK--------MGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHH-HHHHHHHHH--------TTCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHh--------cCCeEEEEeccccc
Confidence 456899999999999644 444433322 24557887665444
No 232
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=83.41 E-value=0.55 Score=39.90 Aligned_cols=19 Identities=21% Similarity=0.051 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++.+++.|++|||||.++
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4567999999999999854
No 233
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=83.35 E-value=5 Score=35.19 Aligned_cols=74 Identities=18% Similarity=0.232 Sum_probs=52.2
Q ss_pred CCcEEEEecChhhHHHHHHHHHc-----cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCc-----cc--cCCCCCC
Q 011901 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----AA--RGLDVPN 411 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~--~Gidi~~ 411 (475)
+.+++|.+|+++-+..+++.+.+ +..+..++|+.+..+....+ .+..+|+|+|.- +. .++++.+
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 45799999999998888877653 35677888888765543322 356789999942 22 4577888
Q ss_pred CCEEEEcCCC
Q 011901 412 VDLIIHYELP 421 (475)
Q Consensus 412 ~~~vi~~~~p 421 (475)
++++|.-.+.
T Consensus 187 ~~~lViDEah 196 (249)
T 3ber_A 187 LKYLVMDEAD 196 (249)
T ss_dssp CCEEEECSHH
T ss_pred cCEEEEcChh
Confidence 8888865543
No 234
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=83.29 E-value=0.83 Score=42.17 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=19.6
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.++.|.| ++..|.||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4445667776 777999999999876
No 235
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=82.90 E-value=3.2 Score=37.75 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=55.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCccE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (475)
+.++||.|+++.-+..+++.+... ++.+..++|+.+...+...+ .+..+|+|+| +.+.+ .+++.++++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~-Gidi~~v~~ 99 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAAR-GLDIPQVDL 99 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT--TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTC-STTCCCCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhc-CccccceeE
Confidence 556999999999999999998776 67788889987766654433 3458999999 44443 456788888
Q ss_pred EEEecc
Q 011901 249 VVLDEA 254 (475)
Q Consensus 249 vViDE~ 254 (475)
||.=+.
T Consensus 100 VI~~d~ 105 (300)
T 3i32_A 100 VVHYRM 105 (300)
T ss_dssp EEESSC
T ss_pred EEEcCC
Confidence 885333
No 236
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.86 E-value=1.3 Score=42.27 Aligned_cols=42 Identities=19% Similarity=0.354 Sum_probs=28.2
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHH
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
.+.++++.|+||||||...-. ++..+.. .+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~--------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM--------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT--------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH--------CCCEEEEEeCCcCH
Confidence 456899999999999964433 3333322 25668888887553
No 237
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=82.55 E-value=0.8 Score=42.57 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=19.0
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.++.|.| ++..|.||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3445566766 678999999999875
No 238
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=82.45 E-value=0.6 Score=38.64 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++-+++.|++|||||.++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345899999999999855
No 239
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=82.45 E-value=0.58 Score=38.89 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCCchhHHH
Q 011901 134 MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (475)
..++.+++.|++|||||.++
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 34567999999999999854
No 240
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=82.40 E-value=1.5 Score=37.97 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=17.4
Q ss_pred cEEEEcCCCCchhHHHHHHHHHH
Q 011901 138 DMIGRARTGTGKTLAFGIPILDK 160 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~ 160 (475)
++++.++.|+|||..++--+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 58999999999998765444433
No 241
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=82.34 E-value=0.93 Score=42.23 Aligned_cols=26 Identities=23% Similarity=0.570 Sum_probs=21.0
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAFG 154 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~~ 154 (475)
.+..++.|.| ++..|.||||||.+..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 5667778877 6779999999998763
No 242
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=82.27 E-value=0.63 Score=38.82 Aligned_cols=18 Identities=22% Similarity=0.050 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
.+.+++.|++|||||.++
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 356899999999999855
No 243
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=82.24 E-value=0.86 Score=41.72 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+.++++.|++|+|||.++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4568999999999999754
No 244
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=82.23 E-value=0.88 Score=43.30 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=19.6
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAFG 154 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~~ 154 (475)
.+..++.|.+ ++..|.||||||.+..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 3445667766 6779999999998763
No 245
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=82.21 E-value=0.91 Score=42.37 Aligned_cols=25 Identities=24% Similarity=0.624 Sum_probs=20.9
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.+..++.|.| ++..|.||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 6677788877 677999999999876
No 246
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=82.19 E-value=0.96 Score=42.18 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=19.2
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.++.|.| ++..|.||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3445667766 677999999999875
No 247
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=82.17 E-value=0.6 Score=42.50 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=29.8
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCcHHH-HHhhhhH-hcCCcEEEEcCCCCchhHHH
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEPA-MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q-~~~i~~i-~~~~~~li~~~tGsGKT~~~ 153 (475)
+...|+++.-.+..++.+...-.. +.. .+....+ ...+.+++.||+|+|||..+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~---~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVIL---PSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHH---HHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHh---hhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 445566666566666666543110 000 0000111 13467999999999999754
No 248
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=82.04 E-value=0.69 Score=41.31 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=16.4
Q ss_pred HhcCCcEEEEcCCCCchhHH
Q 011901 133 AMQGRDMIGRARTGTGKTLA 152 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~ 152 (475)
+..|.-+.+.||||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 44566799999999999973
No 249
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=82.00 E-value=0.99 Score=41.74 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=20.9
Q ss_pred HhhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
..+..++.|.| ++..|.||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35666778877 677999999999876
No 250
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=81.96 E-value=0.98 Score=42.38 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=19.3
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.++.|.| ++..|.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3445667776 677999999999875
No 251
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=81.93 E-value=0.94 Score=42.57 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=19.4
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.++.|.| ++..|.||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3445667776 677999999999875
No 252
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.80 E-value=1 Score=42.91 Aligned_cols=26 Identities=23% Similarity=0.570 Sum_probs=21.2
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAFG 154 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~~ 154 (475)
.+..++.|.| ++..|.||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 5667788877 6779999999998763
No 253
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=81.78 E-value=0.97 Score=42.25 Aligned_cols=24 Identities=21% Similarity=0.556 Sum_probs=18.9
Q ss_pred hhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 130 LEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 130 i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
+..++.|.| ++..|.||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 445667766 677999999999876
No 254
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=81.74 E-value=0.97 Score=42.14 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=19.6
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.++.|.+ ++..|.||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3455667776 677999999999876
No 255
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=81.73 E-value=1 Score=41.98 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=19.4
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.++.|.| ++..|.||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445667776 677999999999875
No 256
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=81.72 E-value=0.64 Score=38.15 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.|++|||||..+
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999855
No 257
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=81.64 E-value=8 Score=37.44 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=19.5
Q ss_pred hhhHhcCCcEEEEcCCCCchhHHHH
Q 011901 130 LEPAMQGRDMIGRARTGTGKTLAFG 154 (475)
Q Consensus 130 i~~i~~~~~~li~~~tGsGKT~~~~ 154 (475)
+..+.+|+..++.|+.|+|||..+.
T Consensus 145 L~pi~kGq~~~i~G~sGvGKTtL~~ 169 (473)
T 1sky_E 145 LAPYIKGGKIGLFGGAGVGKTVLIQ 169 (473)
T ss_dssp HSCEETTCEEEEECCSSSCHHHHHH
T ss_pred HhhhccCCEEEEECCCCCCccHHHH
Confidence 3344578889999999999997543
No 258
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=81.55 E-value=0.98 Score=42.21 Aligned_cols=25 Identities=28% Similarity=0.642 Sum_probs=20.1
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.++.|.| ++..|.||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4556677877 677999999999876
No 259
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=81.53 E-value=0.99 Score=42.20 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=19.3
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.++.|.| ++..|.||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3445667766 678999999999875
No 260
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=81.53 E-value=1 Score=42.28 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=19.6
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.++.|.| ++..|.||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4456677776 677999999999865
No 261
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=81.37 E-value=1 Score=42.15 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=19.6
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.++.|.| ++..|.||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4556677877 677999999999875
No 262
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=81.32 E-value=9.4 Score=39.03 Aligned_cols=77 Identities=19% Similarity=0.319 Sum_probs=59.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCccE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (475)
+.+++|.|+|+.-++.+.+.+.+. ++.+..++|+.....+...+ .+..+|+||| +.+. ..+++.++++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~--gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT-----~~l~-~GlDip~v~l 516 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI--GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI-----NLLR-EGLDIPEVSL 516 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEES-----CCCS-TTCCCTTEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc--CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEec-----chhh-CCcccCCCCE
Confidence 678999999999999999999887 56777778776655544432 2458999999 4333 4456888999
Q ss_pred EEEeccccc
Q 011901 249 VVLDEADQM 257 (475)
Q Consensus 249 vViDE~H~~ 257 (475)
||+-+++.+
T Consensus 517 Vi~~d~d~~ 525 (661)
T 2d7d_A 517 VAILDADKE 525 (661)
T ss_dssp EEETTTTCC
T ss_pred EEEeCcccc
Confidence 999998764
No 263
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=81.28 E-value=0.91 Score=37.80 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.|+-+.+.||+|||||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566899999999999743
No 264
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=81.17 E-value=0.83 Score=38.69 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++-+++.||||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 456899999999999644
No 265
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=81.16 E-value=0.66 Score=41.19 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.||+|+|||..+
T Consensus 46 ~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 46999999999999754
No 266
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=81.12 E-value=0.96 Score=42.37 Aligned_cols=25 Identities=32% Similarity=0.670 Sum_probs=19.6
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.++.|.+ ++..|.||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4556667776 677999999999866
No 267
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=81.08 E-value=1 Score=42.41 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=17.2
Q ss_pred hHhcCCcEEEEcCCCCchhH
Q 011901 132 PAMQGRDMIGRARTGTGKTL 151 (475)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~ 151 (475)
.+..|..+++.||||||||.
T Consensus 171 ~i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHH
T ss_pred HHhcCCEEEEECCCCCCHHH
Confidence 34567889999999999997
No 268
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=81.07 E-value=0.76 Score=38.43 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++.+++.|++|||||.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3467999999999999855
No 269
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=80.96 E-value=0.91 Score=40.18 Aligned_cols=55 Identities=11% Similarity=0.024 Sum_probs=30.7
Q ss_pred ccCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHh--cCCcEEEEcCCCCchhHHH
Q 011901 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~li~~~tGsGKT~~~ 153 (475)
.+...|+++.-.+.....+.+.... + ....++..+- -.+.+++.||+|+|||..+
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~-~--~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF-L--KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH-H--HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-H--HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 3455677776666666666542110 0 0112233221 1235999999999999744
No 270
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=80.94 E-value=0.54 Score=39.45 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCchhHHH
Q 011901 134 MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (475)
..|.-+.+.|++|||||..+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34566899999999999744
No 271
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=80.63 E-value=1.1 Score=38.14 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=14.3
Q ss_pred cEEEEcCCCCchhHHHH
Q 011901 138 DMIGRARTGTGKTLAFG 154 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~ 154 (475)
-.++.|++|||||..+.
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 47899999999998653
No 272
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=80.61 E-value=1 Score=42.21 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCCchhHH
Q 011901 135 QGRDMIGRARTGTGKTLA 152 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~ 152 (475)
.+..+++.||||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 344689999999999963
No 273
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=80.49 E-value=0.92 Score=41.95 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+-++|.||||||||..+
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999755
No 274
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=80.46 E-value=0.77 Score=39.02 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCCchhHHH
Q 011901 134 MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (475)
..|.-+.+.|++|||||..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35667899999999999744
No 275
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=80.41 E-value=0.88 Score=37.40 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++.+.+.|++|||||..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999744
No 276
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=80.39 E-value=1.1 Score=42.31 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=19.8
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAFG 154 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~~ 154 (475)
.++.++.|.+ ++..|.||||||.+..
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 3445667766 7789999999998764
No 277
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=80.37 E-value=4.1 Score=34.29 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=49.9
Q ss_pred CCcEEEEecChhhHHHHHHHHHc------cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecC-----cccc-CCCCCC
Q 011901 344 GGKCIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAAR-GLDVPN 411 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-Gidi~~ 411 (475)
+.+++|.+|+++-++.+.+.+.+ ...+..++|+.+..+.... ..+..+|+|+|. .+.. .++..+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR----LDDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh----cCCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 45899999999998888877754 3456778888776543322 235678999995 2222 346777
Q ss_pred CCEEEEcCC
Q 011901 412 VDLIIHYEL 420 (475)
Q Consensus 412 ~~~vi~~~~ 420 (475)
++++|.-.+
T Consensus 147 ~~~lViDEa 155 (206)
T 1vec_A 147 VQMIVLDEA 155 (206)
T ss_dssp CCEEEEETH
T ss_pred CCEEEEECh
Confidence 888886443
No 278
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=80.34 E-value=2.5 Score=47.20 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=27.5
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
+++-+++|+||+-.-+|..-...+...++...+++-++..+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 44667899999987777655566666666665565555544
No 279
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=80.29 E-value=1.1 Score=42.29 Aligned_cols=25 Identities=32% Similarity=0.611 Sum_probs=19.1
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.++.|.| ++..|.||||||.+.
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 3445667766 777999999999865
No 280
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=80.12 E-value=0.79 Score=39.06 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCCCCchhHHH
Q 011901 134 MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (475)
..++-+++.|++|||||..+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 45667999999999999744
No 281
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=80.05 E-value=1.6 Score=40.83 Aligned_cols=39 Identities=18% Similarity=0.126 Sum_probs=25.6
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCC
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (475)
.+.-+++.|++|+|||..++..+.. +.. .+..++++...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~-~~~--------~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA-AQR--------EGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH-HHH--------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHH--------CCCeEEEEeCC
Confidence 3466999999999999766444333 322 14457777763
No 282
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=79.95 E-value=0.84 Score=38.17 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++-+++.|++|||||..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999754
No 283
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=79.92 E-value=1.1 Score=42.40 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=17.7
Q ss_pred hHhcCCc--EEEEcCCCCchhHHH
Q 011901 132 PAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 132 ~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.|.| ++..|.||||||.+.
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeEe
Confidence 4556766 677999999999876
No 284
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=79.69 E-value=1.1 Score=42.67 Aligned_cols=26 Identities=27% Similarity=0.634 Sum_probs=21.2
Q ss_pred HhhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
..+..++.|.| ++..|.||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 36677788877 677999999999875
No 285
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=79.64 E-value=1.3 Score=42.79 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=19.3
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.+..++.|.| ++..|.||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3445567776 677999999999876
No 286
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=79.59 E-value=1 Score=42.27 Aligned_cols=25 Identities=28% Similarity=0.644 Sum_probs=20.2
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.+..++.|.| ++..|.||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5566778876 677999999999876
No 287
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=79.55 E-value=0.95 Score=43.97 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=30.4
Q ss_pred ccCCcccCCCCCHHHHHHHHHcCCCCCcHHHH-Hhh-hhHhcCCcEEEEcCCCCchhHHH
Q 011901 96 DEGLDISKLDISQDIVAALARRGISKLFPIQK-AVL-EPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~-~~i-~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
.+...|+++.-.+.+++.|...-. .|... +.+ ......+.+++.||+|+|||..+
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 445567777666666666654211 01000 000 01122367999999999999754
No 288
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=79.24 E-value=6.7 Score=36.28 Aligned_cols=74 Identities=14% Similarity=0.297 Sum_probs=54.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCcc
Q 011901 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~ 247 (475)
.+.+++|+|+++.-+..+++.+++. +..+..++|+.+...+.... .+..+|+|+| +.+.. .+++.+++
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~~-Gid~~~~~ 308 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI--GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-----DVMSR-GIDVNDLN 308 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-----TTHHH-HCCCSCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc--CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhhc-CCCcccCC
Confidence 3567999999999999999999887 56777888887765554333 2458999999 33333 34577788
Q ss_pred EEEEec
Q 011901 248 FVVLDE 253 (475)
Q Consensus 248 ~vViDE 253 (475)
+||.-+
T Consensus 309 ~Vi~~~ 314 (367)
T 1hv8_A 309 CVINYH 314 (367)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 887543
No 289
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=79.07 E-value=5.4 Score=39.55 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=59.4
Q ss_pred cCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCc-cc-----cCCCCCCCCEE
Q 011901 343 KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-AA-----RGLDVPNVDLI 415 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-~~-----~Gidi~~~~~v 415 (475)
.++.++|.+|++.-+......|.+ +..+..++|+.+..++..+...+..|..+|+++|+- +. ..++..++..|
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 457899999999999888888765 477888999999999999999999999999999952 21 12333456666
Q ss_pred EEcC
Q 011901 416 IHYE 419 (475)
Q Consensus 416 i~~~ 419 (475)
|.-.
T Consensus 144 ViDE 147 (523)
T 1oyw_A 144 AVDE 147 (523)
T ss_dssp EESS
T ss_pred EEeC
Confidence 6543
No 290
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=79.01 E-value=7.3 Score=36.80 Aligned_cols=73 Identities=12% Similarity=0.214 Sum_probs=55.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCccE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (475)
+.+++|.|+++.-+..+++.+.+. +..+..++|+.+...+...+ .+..+|+|+| +.+. ..+++.++++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gidip~~~~ 337 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVCA-RGIDVEQVSV 337 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGT-SSCCCTTEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----Cccc-cCCCccCCCE
Confidence 567999999999999999999887 56778888887766654433 2458999999 4443 4456788888
Q ss_pred EEEec
Q 011901 249 VVLDE 253 (475)
Q Consensus 249 vViDE 253 (475)
||.-.
T Consensus 338 Vi~~~ 342 (412)
T 3fht_A 338 VINFD 342 (412)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 88533
No 291
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=78.98 E-value=1.2 Score=37.99 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.|.-+++.||+|||||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3455889999999999744
No 292
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=78.96 E-value=0.95 Score=42.00 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=16.6
Q ss_pred HhcCCcEEEEcCCCCchhH
Q 011901 133 AMQGRDMIGRARTGTGKTL 151 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~ 151 (475)
+..|..+.+.|+||||||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 3467889999999999997
No 293
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=78.93 E-value=1.2 Score=37.65 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.|+-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567899999999999733
No 294
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=78.93 E-value=1.1 Score=39.72 Aligned_cols=16 Identities=25% Similarity=-0.037 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.|++|||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3689999999999755
No 295
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=78.85 E-value=2.1 Score=36.60 Aligned_cols=21 Identities=19% Similarity=-0.097 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCchhHHHHH
Q 011901 135 QGRDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~ 155 (475)
.|.-+++.|++|+|||..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 345689999999999975543
No 296
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=78.84 E-value=0.91 Score=37.49 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999754
No 297
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=78.82 E-value=1.4 Score=41.55 Aligned_cols=25 Identities=28% Similarity=0.630 Sum_probs=20.1
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.+..++.|.| ++..|.||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4566677876 677999999999876
No 298
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=78.77 E-value=2.4 Score=38.67 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHh
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIK 163 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~ 163 (475)
+.-+.+.||+|||||.. +..+..+..
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 44588899999999973 344444433
No 299
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=78.70 E-value=1.1 Score=40.97 Aligned_cols=16 Identities=25% Similarity=0.021 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.||||||||..+
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4788999999999754
No 300
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=78.69 E-value=5.4 Score=40.19 Aligned_cols=59 Identities=8% Similarity=0.145 Sum_probs=51.0
Q ss_pred cCCcEEEEecChhhHHHHHHHHHc-cCCcccccCCCCHHHHHHHHHHH--hcCCCcEEEecC
Q 011901 343 KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAF--RDGRFNILIATD 401 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~h~~~~~~~r~~~~~~f--~~g~~~vlvaT~ 401 (475)
.++.+||.+|+++-++.....|.+ ++.+..++|+++..++..+...+ ..+..+|+++|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 457999999999998888887765 57888999999999999888888 578899999997
No 301
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=78.66 E-value=1.2 Score=40.74 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.||||||||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3788999999999755
No 302
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=78.46 E-value=0.95 Score=37.06 Aligned_cols=16 Identities=13% Similarity=-0.172 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|+.|||||.++
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999855
No 303
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=78.46 E-value=19 Score=34.55 Aligned_cols=134 Identities=18% Similarity=0.256 Sum_probs=77.3
Q ss_pred cCccchHHHHHHHHHh--ccCCcEEEEecChhhHHHHHHHHHccC-----CcccccCCCCHHHHHHHHHHHhcCCCcEEE
Q 011901 326 SMYEKPSIIGQLITEH--AKGGKCIVFTQTKRDADRLAHAMAKSY-----NCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (475)
Q Consensus 326 ~~~~~~~~l~~l~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~-----~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 398 (475)
....|......++... ..+.++||.||+..-+....+.+.+.+ .+..+||+....++..... ..+|+|
T Consensus 32 tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv 106 (494)
T 1wp9_A 32 TGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIV 106 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEE
Confidence 3445554444443332 357899999999999888888886543 6778899998876654432 357999
Q ss_pred ecC-ccc-----cCCCCCCCCEEEEcCCCC--ChhHHHHhhhccCCCCCCCeEEEEe-cc-hhHHHHHHHHHHhCC
Q 011901 399 ATD-VAA-----RGLDVPNVDLIIHYELPN--TSETFVHRTGRTGRAGKKGSAILIY-TD-QQARQVKSIERDVGC 464 (475)
Q Consensus 399 aT~-~~~-----~Gidi~~~~~vi~~~~p~--~~~~~~Q~~GR~gR~~~~g~~~~~~-~~-~~~~~~~~i~~~~~~ 464 (475)
+|. .+. ..++..++++||.-.+.. +...|.+...+..+..+....+.+. |+ .+...+..+...++.
T Consensus 107 ~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~ 182 (494)
T 1wp9_A 107 ATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGI 182 (494)
T ss_dssp ECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHHHTTC
T ss_pred ecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCCCCcHHHHHHHHhcCh
Confidence 994 222 245677788888654443 1223333332222222222333322 22 234556667776654
No 304
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=78.44 E-value=8.7 Score=35.94 Aligned_cols=77 Identities=10% Similarity=0.195 Sum_probs=57.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCcc
Q 011901 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~ 247 (475)
.+.++++.|+++.-+..+++.+++. +..+..++|+.+...+...+ .+..+|+|+| +.+. ..+++.+++
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gidip~~~ 313 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE--GHEVSILHGDLQTQERDRLIDDFREGRSKVLITT-----NVLA-RGIDIPTVS 313 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC-----GGGS-SSCCCTTEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC-----Chhh-cCCCcccCC
Confidence 4578999999999999999999887 56778888887766554433 2458999999 4443 446788899
Q ss_pred EEEEecccc
Q 011901 248 FVVLDEADQ 256 (475)
Q Consensus 248 ~vViDE~H~ 256 (475)
+||.-+...
T Consensus 314 ~Vi~~~~p~ 322 (395)
T 3pey_A 314 MVVNYDLPT 322 (395)
T ss_dssp EEEESSCCB
T ss_pred EEEEcCCCC
Confidence 988765543
No 305
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=78.22 E-value=0.77 Score=38.28 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++.+++.|++|||||..+
T Consensus 4 g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 306
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=78.16 E-value=13 Score=32.35 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=50.0
Q ss_pred CCcEEEEecChhhHHHHHHHHHc-----cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCc-c----c-cCCCCCCC
Q 011901 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-A----A-RGLDVPNV 412 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-~----~-~Gidi~~~ 412 (475)
+.+++|.+|+++-+..+.+.+.+ ...+..++|+.+..+.... + ....+|+|+|.- + . ..+++.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 46899999999999888877754 2456677887765443322 2 356789999952 2 2 23577788
Q ss_pred CEEEEcCCC
Q 011901 413 DLIIHYELP 421 (475)
Q Consensus 413 ~~vi~~~~p 421 (475)
+++|.-.+.
T Consensus 176 ~~lViDEah 184 (253)
T 1wrb_A 176 KYIVLDEAD 184 (253)
T ss_dssp CEEEEETHH
T ss_pred CEEEEeCHH
Confidence 888865443
No 307
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=78.10 E-value=1.3 Score=41.92 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.7
Q ss_pred hcCCcEEEEcCCCCchhHH
Q 011901 134 MQGRDMIGRARTGTGKTLA 152 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~ 152 (475)
..+..+++.||||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3556799999999999973
No 308
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=78.08 E-value=3.6 Score=35.79 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=44.8
Q ss_pred cCCcEEEEecChhhHHHHHHHHHcc-----CCcccccCCCCHHHHHHHHHHHhcCCCcEEEecC-----cccc-CCCCCC
Q 011901 343 KGGKCIVFTQTKRDADRLAHAMAKS-----YNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAAR-GLDVPN 411 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-Gidi~~ 411 (475)
.+.+++|.+|+++-+..+.+.+.+. ..+..++|+.+.. .....+..+..+|+|+|. .+.. .++..+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4569999999999999888887542 3455566665432 234455667789999993 3333 366777
Q ss_pred CCEEEEcCC
Q 011901 412 VDLIIHYEL 420 (475)
Q Consensus 412 ~~~vi~~~~ 420 (475)
++++|.-.+
T Consensus 174 ~~~lViDEa 182 (237)
T 3bor_A 174 IKMFVLDEA 182 (237)
T ss_dssp CCEEEEESH
T ss_pred CcEEEECCc
Confidence 888886443
No 309
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=78.03 E-value=2.2 Score=38.64 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.|.-+++.|++|+|||..+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHH
Confidence 4566899999999999644
No 310
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=77.65 E-value=1.3 Score=37.41 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.|.-+.+.||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4556889999999999743
No 311
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=77.29 E-value=1.3 Score=43.25 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++++++.||+|+|||..+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 367999999999999755
No 312
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=77.27 E-value=31 Score=33.79 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.1
Q ss_pred cEEEEcCCCCchhHHHH
Q 011901 138 DMIGRARTGTGKTLAFG 154 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~ 154 (475)
.+++.|.+|+|||..+.
T Consensus 103 vI~ivG~~GvGKTTl~~ 119 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCS 119 (504)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57889999999997553
No 313
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=77.13 E-value=2.7 Score=38.20 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchhHHHH
Q 011901 136 GRDMIGRARTGTGKTLAFG 154 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~ 154 (475)
+..+.+.|++|+|||.+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999997553
No 314
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=77.08 E-value=2 Score=39.21 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36999999999999755
No 315
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=76.90 E-value=1.1 Score=37.02 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+..+++.|++|||||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 446889999999999754
No 316
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=76.87 E-value=1.1 Score=38.41 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|++|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999855
No 317
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=76.83 E-value=3.8 Score=39.61 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=46.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (475)
+.+++|+||++.-++.+++.+++. +..+..++|............+..+|+|+| +.+..+ +++. +++||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT-----~v~e~G-iDip-v~~VI 245 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA--GKSVVVLNRKTFEREYPTIKQKKPDFILAT-----DIAEMG-ANLC-VERVL 245 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT--TCCEEECCSSSCC--------CCCSEEEES-----SSTTCC-TTCC-CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc--CCCEEEecchhHHHHHhhhcCCCceEEEEC-----Chhhee-eccC-ceEEE
Confidence 567999999999999999999887 567777777433222222233568999999 544443 4566 77776
No 318
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=76.69 E-value=1.4 Score=39.58 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=31.1
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHh--cCCcEEEEcCCCCchhHHH
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~li~~~tGsGKT~~~ 153 (475)
+...|+++.-.+.....+.+.... + . ...++..+- -.+.+++.||+|+|||..+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~-~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-L-K-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-H-H-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-H-H-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 456677777777776666543110 0 0 012232221 1234999999999999744
No 319
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=76.61 E-value=2.3 Score=40.01 Aligned_cols=40 Identities=20% Similarity=0.166 Sum_probs=25.4
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCH
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
.|.-+++.|++|+|||..++ .++..+.. .+..++|+..-.
T Consensus 73 ~G~li~I~G~pGsGKTtlal-~la~~~~~--------~g~~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLAL-AIVAQAQK--------AGGTCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHH-HHHHHHHH--------TTCCEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHH-HHHHHHHH--------CCCeEEEEECCC
Confidence 34568999999999996554 34333332 144577776543
No 320
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=76.57 E-value=10 Score=36.40 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=52.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011901 175 LCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 175 ~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (475)
.++|.|+++.-+..+++.+.+. +..+..++|+....++...+ .+...|+|+| +.+. ..+++.++++||
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~v~~-rGlDi~~v~~VI 373 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK--EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT-----SVAS-RGLDIKNIKHVI 373 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT--TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC-----GGGT-SSCCCTTCCEEE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc-----hhhh-CCCCcccCCEEE
Confidence 3999999999999999999886 56788888887766554433 2458999999 4443 456688888888
Q ss_pred E
Q 011901 251 L 251 (475)
Q Consensus 251 i 251 (475)
.
T Consensus 374 ~ 374 (434)
T 2db3_A 374 N 374 (434)
T ss_dssp E
T ss_pred E
Confidence 5
No 321
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=76.49 E-value=25 Score=33.57 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCchhHHHH
Q 011901 135 QGRDMIGRARTGTGKTLAFG 154 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~ 154 (475)
.+.-+.+.|+.|+|||.+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34457788999999997543
No 322
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=76.47 E-value=1.3 Score=37.59 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+.-+.+.|++|||||..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566899999999999744
No 323
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=76.45 E-value=1.2 Score=38.31 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|++|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999855
No 324
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=76.45 E-value=7.2 Score=36.54 Aligned_cols=76 Identities=12% Similarity=0.246 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCcc
Q 011901 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~ 247 (475)
.+.+++|+|+++.-+..+++.+.+. +..+..++|+.+...+...+ .+...|+|+| +.+. ..+++.+++
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~-~Gidi~~~~ 320 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-----NLFG-RGMDIERVN 320 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEES-----CCCS-SCBCCTTEE
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEC-----Chhh-cCCCcccCC
Confidence 3568999999999999999999886 56777888887765544333 2458999999 3332 345677888
Q ss_pred EEEEeccc
Q 011901 248 FVVLDEAD 255 (475)
Q Consensus 248 ~vViDE~H 255 (475)
+||.-+.-
T Consensus 321 ~Vi~~~~p 328 (391)
T 1xti_A 321 IAFNYDMP 328 (391)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 88875543
No 325
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=76.39 E-value=1.2 Score=36.43 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+++++.|..|||||.++
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999865
No 326
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=76.32 E-value=1.1 Score=36.86 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.|.-+.+.|++|||||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3455889999999999744
No 327
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=76.31 E-value=1.4 Score=41.33 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
.+.+++.||+|+|||..+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999755
No 328
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=76.13 E-value=0.83 Score=40.78 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
.+.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356999999999999755
No 329
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=76.09 E-value=2.1 Score=42.13 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l 161 (475)
+.++++.|+||||||.. +-.++..+
T Consensus 167 ~pHlLIaG~TGSGKSt~-L~~li~sL 191 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVG-VNAMILSM 191 (512)
T ss_dssp SCSEEEECCTTSSHHHH-HHHHHHHH
T ss_pred CceEEEECCCCCCHHHH-HHHHHHHH
Confidence 46899999999999964 34444333
No 330
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=76.00 E-value=1.5 Score=40.34 Aligned_cols=16 Identities=25% Similarity=0.108 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.||||||||..+
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999755
No 331
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=75.75 E-value=4.8 Score=43.74 Aligned_cols=77 Identities=23% Similarity=0.374 Sum_probs=57.1
Q ss_pred ccCCcEEEEecChhhHHHHHHHHHc-----cC----CcccccCCCCHHHHHHHHHHHhcCCCcEEEecC-ccccCCC-CC
Q 011901 342 AKGGKCIVFTQTKRDADRLAHAMAK-----SY----NCEPLHGDISQSQRERTLSAFRDGRFNILIATD-VAARGLD-VP 410 (475)
Q Consensus 342 ~~~~~~lVf~~~~~~~~~l~~~L~~-----~~----~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-~~~~Gid-i~ 410 (475)
..+.+++|.+|+++-+..+.+.+.+ +. .+..++|+.+..++.+..+.+.+ .+|+|+|+ .+..-+. +.
T Consensus 97 ~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~ 174 (1054)
T 1gku_B 97 LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELG 174 (1054)
T ss_dssp TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSC
T ss_pred hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhc
Confidence 4577999999999999988887764 23 67889999998888777777766 89999995 2222222 55
Q ss_pred CCCEEEEcCC
Q 011901 411 NVDLIIHYEL 420 (475)
Q Consensus 411 ~~~~vi~~~~ 420 (475)
+++++|.-.+
T Consensus 175 ~l~~lViDEa 184 (1054)
T 1gku_B 175 HFDFIFVDDV 184 (1054)
T ss_dssp CCSEEEESCH
T ss_pred cCCEEEEeCh
Confidence 7888886543
No 332
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=75.73 E-value=1.6 Score=37.26 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.||+||||+..+
T Consensus 1 M~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQA 17 (206)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35789999999999755
No 333
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=75.56 E-value=11 Score=35.62 Aligned_cols=73 Identities=11% Similarity=0.261 Sum_probs=54.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCccE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (475)
..+++|.|+++.-+..+++.+.+. +..+..++|+.+...+...+ .+...|+|+| +.+. ..+++.++++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gidi~~v~~ 347 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGDMPQKERESIMKEFRSGASRVLIST-----DVWA-RGLDVPQVSL 347 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----GGGS-SSCCCTTEEE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC--CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEC-----Chhh-CcCCcccCCE
Confidence 457999999999999999999886 56778888887766554333 2458999999 4443 3456788888
Q ss_pred EEEec
Q 011901 249 VVLDE 253 (475)
Q Consensus 249 vViDE 253 (475)
||.-+
T Consensus 348 Vi~~~ 352 (410)
T 2j0s_A 348 IINYD 352 (410)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 88533
No 334
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=75.45 E-value=2.4 Score=38.70 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+.-+.+.|++|||||...
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4456889999999999743
No 335
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=75.29 E-value=2 Score=36.67 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=21.2
Q ss_pred CcHHHHHhhhhHhcCCcEEEEcCCCCchhHHH
Q 011901 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
.++.++.. ..+..++-+++.|++|||||..+
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 34455444 23445667899999999999744
No 336
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=75.16 E-value=1.5 Score=36.21 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|++|||||.++
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6899999999999855
No 337
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=74.96 E-value=1.2 Score=37.19 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+-+++.|++|||||..+
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999855
No 338
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=74.88 E-value=2 Score=36.94 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=15.4
Q ss_pred hcCCcEEEEcCCCCchhHH
Q 011901 134 MQGRDMIGRARTGTGKTLA 152 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~ 152 (475)
..|.-+.+.||+|||||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3566789999999999973
No 339
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=74.87 E-value=10 Score=35.70 Aligned_cols=72 Identities=10% Similarity=0.163 Sum_probs=53.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCccE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (475)
+.+++++|+++.-+..+++.+.+. +..+..++|+.+...+...+ .+...|+|+| +.+. ..+++.++++
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-----~~~~-~Gidip~~~~ 329 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL--GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS-----DLLT-RGIDIQAVNV 329 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES-----SCSS-SSCCCTTEEE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-----Cccc-cCCCccCCCE
Confidence 568999999999999999999887 56777788887765554333 2458999999 3333 3456778888
Q ss_pred EEEe
Q 011901 249 VVLD 252 (475)
Q Consensus 249 vViD 252 (475)
||.-
T Consensus 330 Vi~~ 333 (400)
T 1s2m_A 330 VINF 333 (400)
T ss_dssp EEES
T ss_pred EEEe
Confidence 7753
No 340
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=74.80 E-value=4.1 Score=33.46 Aligned_cols=15 Identities=20% Similarity=-0.051 Sum_probs=12.5
Q ss_pred cEEEEcCCCCchhHH
Q 011901 138 DMIGRARTGTGKTLA 152 (475)
Q Consensus 138 ~~li~~~tGsGKT~~ 152 (475)
-+.+.|+.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999963
No 341
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=74.74 E-value=2 Score=35.83 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+-+.+.||+|||||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34788999999999743
No 342
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=74.62 E-value=1.5 Score=36.79 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+..+++.|++|||||.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4456899999999999855
No 343
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=74.56 E-value=1.6 Score=36.20 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.|++|||||.++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35889999999999855
No 344
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=74.52 E-value=1.4 Score=37.31 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+-+++.|++|||||..+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36899999999999754
No 345
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=74.45 E-value=1.9 Score=35.88 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=13.0
Q ss_pred cEEEEcCCCCchhHH
Q 011901 138 DMIGRARTGTGKTLA 152 (475)
Q Consensus 138 ~~li~~~tGsGKT~~ 152 (475)
.+.+.||+|||||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999973
No 346
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=74.40 E-value=1 Score=41.96 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 357999999999999754
No 347
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=74.37 E-value=1.9 Score=36.45 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++-+++.||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 4566899999999999743
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=74.33 E-value=1.5 Score=35.81 Aligned_cols=16 Identities=13% Similarity=-0.085 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|++|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999754
No 349
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=74.32 E-value=8 Score=34.18 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=51.5
Q ss_pred cCCcEEEEecChhhHHHHHHHHHc-----cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecC-----ccc--cCCCCC
Q 011901 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAA--RGLDVP 410 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidi~ 410 (475)
.+.+++|.+|+++-++...+.+.+ +..+..+.|+........ .+..| .+|+|+|+ .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 467899999999999998888865 245566778776554432 33344 78999994 222 347788
Q ss_pred CCCEEEEcCC
Q 011901 411 NVDLIIHYEL 420 (475)
Q Consensus 411 ~~~~vi~~~~ 420 (475)
+++.+|.-.+
T Consensus 201 ~l~~lViDEa 210 (262)
T 3ly5_A 201 NLQCLVIDEA 210 (262)
T ss_dssp TCCEEEECSH
T ss_pred cCCEEEEcCh
Confidence 8988886544
No 350
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=74.30 E-value=1.8 Score=40.16 Aligned_cols=16 Identities=25% Similarity=0.100 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-++|.||||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4789999999999755
No 351
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=74.21 E-value=1.3 Score=36.99 Aligned_cols=17 Identities=29% Similarity=0.190 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+-+++.|++|||||..+
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999854
No 352
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=74.14 E-value=1.9 Score=40.03 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999744
No 353
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=73.96 E-value=21 Score=34.92 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=52.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCccE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (475)
+.+.++++.+..-+..+.+.+.+.. .++..++|+.+...+...+ .+..+|+|+|+..+-. .+++.++++
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~--~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~ 419 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEY--DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHH 419 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTC--SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEE
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcC--CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcE
Confidence 4445555555777777888887764 3677778877755543322 3558999999665543 456888999
Q ss_pred EEEecccc
Q 011901 249 VVLDEADQ 256 (475)
Q Consensus 249 vViDE~H~ 256 (475)
||+.....
T Consensus 420 vi~~~~~~ 427 (510)
T 2oca_A 420 VVLAHGVK 427 (510)
T ss_dssp EEESSCCC
T ss_pred EEEeCCCC
Confidence 99988774
No 354
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=73.96 E-value=6 Score=33.99 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=48.4
Q ss_pred cCCcEEEEecChhhHHHHHHHHHc----cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCc-----c-ccCCCCCCC
Q 011901 343 KGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----A-ARGLDVPNV 412 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~-~~Gidi~~~ 412 (475)
.+.+++|.+|+++-+..+.+.+.+ +..+..++|+.+..++.. .+. ...+|+|+|.- + ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DIS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---Hhc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 467899999999999988888765 356677787765443322 233 34789999941 1 235678888
Q ss_pred CEEEEcCCC
Q 011901 413 DLIIHYELP 421 (475)
Q Consensus 413 ~~vi~~~~p 421 (475)
+++|.-.+.
T Consensus 169 ~~lViDEah 177 (228)
T 3iuy_A 169 TYLVIDEAD 177 (228)
T ss_dssp CEEEECCHH
T ss_pred eEEEEECHH
Confidence 988865543
No 355
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=73.81 E-value=2.6 Score=37.17 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCCchhHHH
Q 011901 134 MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (475)
+.+..+.+.|++|||||.++
T Consensus 46 l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34789999999999999854
No 356
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=73.77 E-value=1.6 Score=37.54 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++.+++.|++|||||..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999855
No 357
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=73.75 E-value=1.5 Score=36.60 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=13.4
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.|++|||||..+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4688999999999744
No 358
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=73.63 E-value=4.7 Score=40.12 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=18.3
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHH
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKII 162 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~ 162 (475)
.++++.|.||||||.+ +-.++..+.
T Consensus 215 pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp CCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 5799999999999964 444444443
No 359
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=73.28 E-value=2.4 Score=36.09 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=13.7
Q ss_pred CCcEEEEcCCCCchhH
Q 011901 136 GRDMIGRARTGTGKTL 151 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~ 151 (475)
+.-+.+.|++|||||.
T Consensus 22 g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 22 RQLVALSGAPGSGKST 37 (208)
T ss_dssp CEEEEEECCTTSCTHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4457899999999997
No 360
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=73.25 E-value=1.7 Score=35.51 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.|++|||||.++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999855
No 361
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=73.23 E-value=2.2 Score=36.30 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=15.9
Q ss_pred hHhcCCcEEEEcCCCCchhHH
Q 011901 132 PAMQGRDMIGRARTGTGKTLA 152 (475)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~ 152 (475)
.+..|.-+.+.||+|||||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 566777789999999999973
No 362
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=73.21 E-value=6.3 Score=37.98 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
.+++++.||+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 367999999999999754
No 363
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=73.21 E-value=1.7 Score=36.71 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.|++|||||.++
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999854
No 364
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=73.00 E-value=2 Score=41.99 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
..++++.||+|+|||..+
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 357999999999999755
No 365
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=72.99 E-value=1.8 Score=36.29 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCchhHH
Q 011901 137 RDMIGRARTGTGKTLA 152 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~ 152 (475)
+-+++.||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999973
No 366
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=72.92 E-value=1.1 Score=38.30 Aligned_cols=22 Identities=18% Similarity=-0.068 Sum_probs=16.7
Q ss_pred hHhcCCcEEEEcCCCCchhHHH
Q 011901 132 PAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~ 153 (475)
.+..+.-+.+.|++|||||..+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHH
Confidence 3444556889999999999744
No 367
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=72.86 E-value=1.6 Score=37.79 Aligned_cols=18 Identities=17% Similarity=0.041 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
.+.+++.|++|||||..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999854
No 368
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=72.81 E-value=25 Score=35.95 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=57.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCccE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (475)
+.+++|.|+|+.-++.+.+.+.+. ++.+..++++.....+...+ .+..+|+||| +.+. ..+++.++++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~--gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l~-~GlDip~v~l 510 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH--GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLLR-EGLDIPEVSL 510 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCCC-TTCCCTTEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc--CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chhh-cCccCCCCCE
Confidence 668999999999999999999887 56777777776655544432 2458999999 4443 3456788999
Q ss_pred EEEeccccc
Q 011901 249 VVLDEADQM 257 (475)
Q Consensus 249 vViDE~H~~ 257 (475)
||+=+++..
T Consensus 511 VI~~d~d~~ 519 (664)
T 1c4o_A 511 VAILDADKE 519 (664)
T ss_dssp EEETTTTSC
T ss_pred EEEeCCccc
Confidence 998888653
No 369
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=72.81 E-value=1.8 Score=36.60 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++.+++.|+.|||||..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3566899999999999855
No 370
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=72.73 E-value=6.1 Score=38.01 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=47.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~v 249 (475)
+.+++|+||++.-++.+++.+++. +..+..++|+...........+..+|+|+| +.+..+. ++. ...|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT-----~v~e~Gi-Dip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA--GKKVLYLNRKTFESEYPKCKSEKWDFVITT-----DISEMGA-NFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT--TCCEEEESTTTHHHHTTHHHHSCCSEEEEC-----GGGGTSC-CCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc--CCeEEEeCCccHHHHHHhhcCCCCeEEEEC-----chHHcCc-ccC-CcEE
Confidence 457999999999999999999887 577777777643222222234568999999 6665543 454 4444
No 371
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=72.65 E-value=1.6 Score=39.56 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.-+++.|++|||||..+
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34899999999999754
No 372
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=72.40 E-value=1.8 Score=37.32 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=15.3
Q ss_pred HhcCCcEEEEcCCCCchhHH
Q 011901 133 AMQGRDMIGRARTGTGKTLA 152 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~ 152 (475)
+..|.-+.+.||.|||||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 34556689999999999973
No 373
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=72.39 E-value=1.6 Score=37.38 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|++|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 374
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=72.38 E-value=8 Score=43.89 Aligned_cols=52 Identities=13% Similarity=0.060 Sum_probs=35.3
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCC
Q 011901 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 200 (475)
+-+.+.||.|||||..++..+.+ ..+ .|..++++.+-.+|.... +++++-++
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~-~~~--------~g~~~~~i~~e~~~~~~~---~~~~Gv~~ 1483 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAA-AQR--------EGKTCAFIDAEHALDPIY---ARKLGVDI 1483 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH-HHH--------TTCCEEEECTTSCCCHHH---HHHTTCCG
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH-HHh--------cCCeEEEEecCCCCCHHH---HHHcCCCH
Confidence 55899999999999876544433 333 367799999877776654 44444333
No 375
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=72.15 E-value=7.3 Score=33.25 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=52.5
Q ss_pred ccCccchHH-HHHHHHHh---ccCCcEEEEecChhhHHHHHHHHHc-----cCCcccccCCCCHHHHHHHHHHHhcCCCc
Q 011901 325 TSMYEKPSI-IGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFN 395 (475)
Q Consensus 325 ~~~~~~~~~-l~~l~~~~---~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 395 (475)
.....|... +..++... ..+.+++|.+|+++-+..+.+.+.+ +..+..++|+.+..+.... + ...+
T Consensus 59 pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~ 133 (224)
T 1qde_A 59 QSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--RDAQ 133 (224)
T ss_dssp CTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCS
T ss_pred CCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--CCCC
Confidence 344455543 33344433 3456899999999999888887754 3556777887654443322 2 2378
Q ss_pred EEEecCc-c-----ccCCCCCCCCEEEEcCC
Q 011901 396 ILIATDV-A-----ARGLDVPNVDLIIHYEL 420 (475)
Q Consensus 396 vlvaT~~-~-----~~Gidi~~~~~vi~~~~ 420 (475)
|+|+|.- + ...++..+++++|.-.+
T Consensus 134 iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEa 164 (224)
T 1qde_A 134 IVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 164 (224)
T ss_dssp EEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEECHHHHHHHHHhCCcchhhCcEEEEcCh
Confidence 9999952 1 24566777888886543
No 376
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=72.14 E-value=2.4 Score=39.65 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=16.0
Q ss_pred cCCc--EEEEcCCCCchhHHHH
Q 011901 135 QGRD--MIGRARTGTGKTLAFG 154 (475)
Q Consensus 135 ~~~~--~li~~~tGsGKT~~~~ 154 (475)
.|.+ ++..|.||||||.+..
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 3655 6889999999998763
No 377
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=72.01 E-value=4.1 Score=37.13 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHHH
Q 011901 137 RDMIGRARTGTGKTLAFG 154 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~ 154 (475)
+-+++.|++|+|||....
T Consensus 105 ~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 457899999999997543
No 378
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=71.90 E-value=2 Score=43.41 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=14.3
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999744
No 379
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=71.87 E-value=8.8 Score=39.31 Aligned_cols=68 Identities=10% Similarity=0.129 Sum_probs=48.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh-hcCCcEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (475)
+.+++|+||++.-++.+++.+++. ++.+..++|... ....... .+..+|+|+| +.+..+ +++. +.+||
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~--g~~v~~lHg~eR-~~v~~~F~~g~~~VLVaT-----dv~e~G-IDip-v~~VI 478 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA--GKRVIQLNRKSY-DTEYPKCKNGDWDFVITT-----DISEMG-ANFG-ASRVI 478 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECSSSH-HHHGGGGGTCCCSEEEEC-----GGGGTT-CCCC-CSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCeEEEeChHHH-HHHHHHHHCCCceEEEEC-----chhhcc-eeeC-CcEEE
Confidence 567999999999999999999887 567777777422 2222223 3558999999 555544 4566 77766
No 380
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=71.49 E-value=1.7 Score=36.17 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.|++|||||..+
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 381
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=71.42 E-value=1.7 Score=36.52 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++-+++.|++|||||.++
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 382
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=71.41 E-value=2.3 Score=35.97 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+.-+.+.|++|||||..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556889999999999754
No 383
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=71.38 E-value=2 Score=36.96 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.|++|||||..+
T Consensus 6 ~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 6 LKVMISGAPASGKGTQC 22 (222)
T ss_dssp CCEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56899999999999855
No 384
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=71.09 E-value=3.6 Score=34.48 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=24.0
Q ss_pred CCCccEEEEecccccc--cCCchHHHHHHHHhCCCCCcEEEEccCC
Q 011901 243 LSEVQFVVLDEADQML--SVGFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~--~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 286 (475)
..+.+++|+||+..+. +..+...+..+++. ...+++-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 4567899999987663 33344455555443 23345446664
No 385
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=71.08 E-value=3.4 Score=38.69 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.-+.+.|++|||||...
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 34789999999999743
No 386
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=71.07 E-value=9.8 Score=36.79 Aligned_cols=69 Identities=16% Similarity=0.096 Sum_probs=48.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (475)
+.++||+||++.-++++++.+.+. +..+..+++............+..+|+|+| +.+..+ +++.+ .+||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~--g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT-----~v~~~G-iDip~-~~VI 256 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRKTFDTEYPKTKLTDWDFVVTT-----DISEMG-ANFRA-GRVI 256 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECTTTHHHHGGGGGSSCCSEEEEC-----GGGGSS-CCCCC-SEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc--CCeEEECCHHHHHHHHHhhccCCceEEEEC-----CHHHhC-cCCCC-CEEE
Confidence 447999999999999999999876 566677776654322222223568999999 555544 45666 6665
No 387
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=70.97 E-value=3.2 Score=33.21 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=12.9
Q ss_pred cEEEEcCCCCchhHH
Q 011901 138 DMIGRARTGTGKTLA 152 (475)
Q Consensus 138 ~~li~~~tGsGKT~~ 152 (475)
-.++.||+|||||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368999999999974
No 388
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=70.95 E-value=1.8 Score=36.02 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.|++|||||.++
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 389
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=70.92 E-value=2.1 Score=37.66 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
.+.+++.|++|||||.++
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999855
No 390
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=70.82 E-value=1.9 Score=36.98 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++.+++.|++|||||..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 356899999999999854
No 391
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=70.81 E-value=3.5 Score=38.08 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=30.4
Q ss_pred CccEEEEeccccccc-CCchHHHHHHHHhCCCCCcEEEEccCCChhHHHHHHhh
Q 011901 245 EVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (475)
Q Consensus 245 ~~~~vViDE~H~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 297 (475)
..+++++|.+-+... ......+..+.+.+.++..++++.+|...........+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 345788998876432 22444555555555566667777777655544444433
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=70.71 E-value=1.9 Score=35.65 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.|+.+.+.|+.|||||.++
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456889999999999744
No 393
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=70.53 E-value=1.8 Score=36.82 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++-+++.|+.|||||..+
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 456889999999999754
No 394
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=70.47 E-value=12 Score=31.15 Aligned_cols=32 Identities=19% Similarity=0.409 Sum_probs=19.8
Q ss_pred CcEEEEccHHHHHHHHhCCCCCCCccEEEEecccc
Q 011901 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (475)
Q Consensus 222 ~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE~H~ 256 (475)
.+++-+.++.+...+..- ...+++||+|=.-.
T Consensus 55 ~~~~~~~~~~l~~~l~~l---~~~yD~viiD~~~~ 86 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD---LADYDFAIVDGAGS 86 (206)
T ss_dssp SEEEECCSHHHHHTHHHH---TTTSSEEEEECCSS
T ss_pred CcEEecCcHHHHHHHHHh---cCCCCEEEEECCCC
Confidence 455555556666665542 23578999996554
No 395
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=70.23 E-value=1.7 Score=36.02 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=11.1
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++-+++.|+.|||||.++
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999855
No 396
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=70.21 E-value=2 Score=36.40 Aligned_cols=16 Identities=25% Similarity=0.077 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+.+.|+.|||||.++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999854
No 397
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=70.19 E-value=2.3 Score=40.34 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-++|.||||||||..+
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3688999999999755
No 398
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=70.05 E-value=16 Score=36.10 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=0.0
Q ss_pred HhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchh
Q 011901 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~ 212 (475)
+..|.-+++.|++|+|||......+-..... |.+++++++..... |+......+...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---------G~~vi~~~~ee~~~-~l~~~~~~~g~~------------- 334 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACAN---------KERAILFAYEESRA-QLLRNAYSWGMD------------- 334 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTT---------TCCEEEEESSSCHH-HHHHHHHTTSCC-------------
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---------CCCEEEEEEeCCHH-HHHHHHHHcCCC-------------
Q ss_pred HHHHHhhcCCcEEE-------EccHHHHHHHHhCCCCCCCccEEEEecccccccCC-----chHHHHHHHHhCCCCCcEE
Q 011901 213 HQMRALDYGVDAVV-------GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-----FAEDVEVILERLPQNRQSM 280 (475)
Q Consensus 213 ~~~~~~~~~~~Ilv-------~T~~~l~~~l~~~~~~~~~~~~vViDE~H~~~~~~-----~~~~~~~i~~~~~~~~~~i 280 (475)
...+...-.+-+ -+.+.....+..... ..+.+++|+| -=.-++.. ....+..++..+......+
T Consensus 335 --~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l-~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tv 410 (525)
T 1tf7_A 335 --FEEMERQNLLKIVCAYPESAGLEDHLQIIKSEIN-DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITG 410 (525)
T ss_dssp --HHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHH-TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred --HHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHH-hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEE
Q ss_pred EEc
Q 011901 281 MFS 283 (475)
Q Consensus 281 ~~S 283 (475)
+++
T Consensus 411 ilv 413 (525)
T 1tf7_A 411 LFT 413 (525)
T ss_dssp EEE
T ss_pred EEE
No 399
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=70.04 E-value=11 Score=41.97 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=28.3
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCCCCCcEEEEc
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~~~~~~i~~S 283 (475)
+++-+++++||+-.-+|......+...+..+.+++-+++.|
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 66788999999998888766666666666654444444443
No 400
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=69.99 E-value=3 Score=37.99 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||+|||||.
T Consensus 125 ~Ge~vaIvGpsGsGKST 141 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSM 141 (305)
T ss_dssp TCSEEEEECSSSSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56778999999999996
No 401
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=69.98 E-value=2 Score=36.14 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|++|||||..+
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999744
No 402
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=69.94 E-value=2 Score=35.76 Aligned_cols=18 Identities=28% Similarity=0.204 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+..+++.|++|||||..+
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456889999999999754
No 403
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=69.85 E-value=2.2 Score=37.07 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++.+++.|++|||||..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999855
No 404
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=69.84 E-value=2 Score=36.96 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+.+.|++|||||.++
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999854
No 405
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=69.72 E-value=2 Score=36.35 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+.+.|++|||||.++
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999754
No 406
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=69.41 E-value=2.2 Score=36.08 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.|++|||||.++
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 407
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=69.15 E-value=2.2 Score=36.20 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++-+++.|+.|||||.++
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 3556899999999999854
No 408
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=69.07 E-value=5.8 Score=47.26 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHH-HHhhh---hHhcCCcEEEEcCCCCchhHHHH
Q 011901 106 ISQDIVAALARRGISKLFPIQ-KAVLE---PAMQGRDMIGRARTGTGKTLAFG 154 (475)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q-~~~i~---~i~~~~~~li~~~tGsGKT~~~~ 154 (475)
+.+.+.+.+.+.++. +++.+ .+++. .+...+.+++.||||||||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 345566666677764 66655 33332 33445779999999999998653
No 409
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=69.00 E-value=8.9 Score=32.98 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=51.5
Q ss_pred cCCcEEEEecChhhHHHHHHHHHc------cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCc-c-----ccCCCCC
Q 011901 343 KGGKCIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-A-----ARGLDVP 410 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-~-----~~Gidi~ 410 (475)
.+.+++|.+|+++-+..+.+.+.+ +..+..++|+.+..++...+ ...+|+|+|.- + ...++..
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 356899999999999888887754 35677889988776554332 35789999952 2 2345667
Q ss_pred CCCEEEEcCC
Q 011901 411 NVDLIIHYEL 420 (475)
Q Consensus 411 ~~~~vi~~~~ 420 (475)
+++++|.-.+
T Consensus 166 ~~~~lViDEa 175 (230)
T 2oxc_A 166 SIRLFILDEA 175 (230)
T ss_dssp GCCEEEESSH
T ss_pred cCCEEEeCCc
Confidence 7888876443
No 410
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=68.91 E-value=1.9 Score=37.47 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=12.0
Q ss_pred hcCCcEEEEcCCCCchhHHH
Q 011901 134 MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (475)
..|.-+.+.||+|||||...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34566889999999999743
No 411
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=68.81 E-value=9.6 Score=38.80 Aligned_cols=67 Identities=16% Similarity=0.252 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011901 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (475)
.+.++||+++++.-++++++.+++. ++.+..++|+.+... ..+++.+|+|+| +.+.++. ++. +++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~--g~~v~~lHG~l~q~e---r~~~~~~VLVAT-----dVaerGI-DId-V~~VI 461 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL--GINAVAYYRGLDVSV---IPTIGDVVVVAT-----DALMTGY-TGD-FDSVI 461 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECTTSCGGG---SCSSSCEEEEEC-----TTHHHHC-CCC-BSEEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC--CCcEEEecCCCCHHH---HHhCCCcEEEEC-----ChHHccC-CCC-CcEEE
Confidence 4568999999999999999999886 577888888877553 223556999999 6666554 354 77776
No 412
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=71.83 E-value=1 Score=37.09 Aligned_cols=73 Identities=18% Similarity=0.300 Sum_probs=49.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCccE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (475)
+.++||.|+++.-+..+++.+... ++.+..++|+.+...+...+ .+...|+|+| +.+.. .+++.++++
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~-Gid~~~~~~ 101 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA--GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAAR-GIDIPDVSH 101 (170)
Confidence 456999999999999998888776 55667777776655443332 2347899999 33333 234666666
Q ss_pred EEEec
Q 011901 249 VVLDE 253 (475)
Q Consensus 249 vViDE 253 (475)
||.-+
T Consensus 102 Vi~~~ 106 (170)
T 2yjt_D 102 VFNFD 106 (170)
Confidence 66543
No 413
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=68.68 E-value=2.1 Score=36.46 Aligned_cols=18 Identities=22% Similarity=-0.058 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+.-+.+.|++|||||..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 344788999999999743
No 414
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=68.66 E-value=2.3 Score=35.46 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.|+.|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688999999999754
No 415
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=68.53 E-value=5.2 Score=36.73 Aligned_cols=19 Identities=26% Similarity=0.221 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCchhHHHH
Q 011901 136 GRDMIGRARTGTGKTLAFG 154 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~ 154 (475)
++-+.+.|++|+|||.+..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4458889999999997543
No 416
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=68.22 E-value=4.1 Score=39.79 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.4
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+.+.|++|||||...
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 4789999999999743
No 417
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=67.97 E-value=3.1 Score=35.82 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+-+++.||+||||+..+
T Consensus 30 kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp EEEEEECCTTCCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 44788999999999755
No 418
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=67.91 E-value=4.3 Score=41.11 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=18.7
Q ss_pred hhHhcCCcEEEEcCCCCchhHHH
Q 011901 131 EPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 131 ~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
..+..+..+++.||+|+|||..+
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34556789999999999999744
No 419
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=67.86 E-value=2.5 Score=35.94 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++-+++.|+.|||||.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556899999999999855
No 420
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=67.70 E-value=2.4 Score=36.57 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|++|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 421
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=67.70 E-value=3.2 Score=33.64 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=14.8
Q ss_pred hcCCcEEEEcCCCCchhH
Q 011901 134 MQGRDMIGRARTGTGKTL 151 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~ 151 (475)
..|.-+.+.||.|+|||.
T Consensus 31 ~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 345568899999999996
No 422
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=67.59 E-value=2.4 Score=37.64 Aligned_cols=17 Identities=24% Similarity=0.122 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+-+++.|++|||||..+
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 35889999999999754
No 423
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=67.14 E-value=2.4 Score=36.51 Aligned_cols=19 Identities=21% Similarity=-0.018 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.|.-+.+.||+|||||..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4456899999999999743
No 424
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=66.76 E-value=2.8 Score=39.03 Aligned_cols=57 Identities=9% Similarity=-0.043 Sum_probs=29.9
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHH-HHHHHHHHHh
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL-AKQVEKEFHE 195 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L-a~q~~~~~~~ 195 (475)
|.-+++.|++|||||..++..+...... ....+.+..++++.-...+ ..++.+.+..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~---~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~ 179 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLP---GAGGYPGGKIIFIDTENTFRPDRLRDIADR 179 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSC---BTTTBCCCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcc---cccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3458999999999997554333221110 0001135568887754431 3344444433
No 425
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=66.76 E-value=2.2 Score=44.84 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=29.4
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHhcCCcEEEEcCCCCchhHHH
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
+...|+++.-.+.+++.+...-.......+...--.+..+..+++.||+|+|||..+
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHH
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHH
Confidence 444555655555566666543211110000000001224567999999999999844
No 426
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=66.36 E-value=5.1 Score=38.55 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCchhHHHHH
Q 011901 137 RDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~ 155 (475)
..+++.|++|+|||..+.-
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999975543
No 427
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=66.29 E-value=2.7 Score=35.10 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=13.0
Q ss_pred EEEEcCCCCchhHHH
Q 011901 139 MIGRARTGTGKTLAF 153 (475)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (475)
+.+.|+.|||||.++
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999855
No 428
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=66.24 E-value=3.6 Score=33.93 Aligned_cols=15 Identities=20% Similarity=0.082 Sum_probs=12.9
Q ss_pred cEEEEcCCCCchhHH
Q 011901 138 DMIGRARTGTGKTLA 152 (475)
Q Consensus 138 ~~li~~~tGsGKT~~ 152 (475)
-.++.|++|||||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 468999999999973
No 429
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=66.20 E-value=2.7 Score=36.89 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+.+.|++|||||..+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999744
No 430
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=65.69 E-value=2 Score=38.03 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+++.|++|||||..+
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999754
No 431
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=65.66 E-value=7.4 Score=44.13 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=28.9
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHH
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 184 (475)
.+..+++.|++|||||..++..+...+.. +..++|+.-...
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~---------G~~vlYI~te~~ 73 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAEHA 73 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhC---------CCceEEEEecCc
Confidence 35789999999999998665555544432 556888876543
No 432
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=65.59 E-value=2.6 Score=36.82 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||+|||||.
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 45668899999999997
No 433
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=65.41 E-value=3.7 Score=37.64 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCchhHHHHH
Q 011901 135 QGRDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~ 155 (475)
.+..+++.||+|+|||..++.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 445679999999999975543
No 434
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=65.37 E-value=3.4 Score=43.14 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
..++++.||+|+|||.++
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 357999999999999755
No 435
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=65.12 E-value=4.2 Score=42.13 Aligned_cols=25 Identities=24% Similarity=0.627 Sum_probs=20.0
Q ss_pred hhhhHhcCCc--EEEEcCCCCchhHHH
Q 011901 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.+..++.|.| ++..|.||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5566778877 667899999999875
No 436
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=65.05 E-value=4.5 Score=33.55 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=12.8
Q ss_pred EEEEcCCCCchhHHH
Q 011901 139 MIGRARTGTGKTLAF 153 (475)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (475)
+++.|++|||||.-+
T Consensus 2 ilV~Gg~~SGKS~~A 16 (180)
T 1c9k_A 2 ILVTGGARSGKSRHA 16 (180)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 689999999999644
No 437
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=65.00 E-value=3.6 Score=37.77 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=12.0
Q ss_pred EEEEcCCCCchhH
Q 011901 139 MIGRARTGTGKTL 151 (475)
Q Consensus 139 ~li~~~tGsGKT~ 151 (475)
+++.|+.|||||.
T Consensus 7 ~~i~G~~GaGKTT 19 (318)
T 1nij_A 7 TLLTGFLGAGKTT 19 (318)
T ss_dssp EEEEESSSSSCHH
T ss_pred EEEEecCCCCHHH
Confidence 6889999999997
No 438
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=64.94 E-value=2.8 Score=35.21 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+.+.|++|||||.++
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999855
No 439
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=64.69 E-value=3.1 Score=34.99 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=13.2
Q ss_pred EEEEcCCCCchhHHH
Q 011901 139 MIGRARTGTGKTLAF 153 (475)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (475)
+.+.|++|||||.++
T Consensus 15 IgltG~~GSGKSTva 29 (192)
T 2grj_A 15 IGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999865
No 440
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=64.11 E-value=5.2 Score=33.00 Aligned_cols=14 Identities=43% Similarity=0.349 Sum_probs=12.4
Q ss_pred cEEEEcCCCCchhH
Q 011901 138 DMIGRARTGTGKTL 151 (475)
Q Consensus 138 ~~li~~~tGsGKT~ 151 (475)
-+.+.|+.|||||.
T Consensus 8 ~i~i~G~sGsGKTT 21 (174)
T 1np6_A 8 LLAFAAWSGTGKTT 21 (174)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEEeCCCCCHHH
Confidence 47889999999996
No 441
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=63.74 E-value=4.3 Score=38.10 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-.++.||+|||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4779999999999754
No 442
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=63.62 E-value=3 Score=36.49 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||+|||||.
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45668899999999997
No 443
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=62.93 E-value=3.2 Score=40.82 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=28.6
Q ss_pred cCCcccCCCCCHHHHHHHHHcCCCCCcHHHHHhhhhHh--cCCcEEEEcCCCCchhHHH
Q 011901 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~li~~~tGsGKT~~~ 153 (475)
+...|+++.-.++.+..+.+.-.. +. ....+..+- -.+.+++.||+|+|||+.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~--~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LK--NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HH--CGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hh--chhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 445677776566666655532100 00 001111111 1245999999999999744
No 444
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=62.85 E-value=3.3 Score=35.51 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 34 ~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp TTCCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46678899999999997
No 445
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=62.83 E-value=20 Score=32.44 Aligned_cols=71 Identities=24% Similarity=0.348 Sum_probs=49.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHh----hcCCcEEEEccHHHHHHHHhCCCCCCCcc
Q 011901 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~ 247 (475)
.+.+++|.++++.-+..+++.+. .+..++|+.+...+...+ .+..+|+|+| +.+.. .+++.+++
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~~-Gid~~~~~ 286 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD------NAIELRGDLPQSVRNRNIDAFREGEYDMLITT-----DVASR-GLDIPLVE 286 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----HHHHT-TCCCCCBS
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEc-----Ccccc-CCCccCCC
Confidence 46679999999998887666554 455667776655544333 2458999999 55554 45678888
Q ss_pred EEEEecc
Q 011901 248 FVVLDEA 254 (475)
Q Consensus 248 ~vViDE~ 254 (475)
+||.-..
T Consensus 287 ~Vi~~~~ 293 (337)
T 2z0m_A 287 KVINFDA 293 (337)
T ss_dssp EEEESSC
T ss_pred EEEEecC
Confidence 8886443
No 446
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=62.32 E-value=5.2 Score=34.84 Aligned_cols=76 Identities=18% Similarity=0.404 Sum_probs=48.5
Q ss_pred cCCcEEEEecChhhHHHHHHHHHc-----cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecC-----cccc---CCCC
Q 011901 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAAR---GLDV 409 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~---Gidi 409 (475)
.+.+++|.+|+++-+..+.+.+.+ ++.+..++|+.... ........+..+|+|+|. .+.. ++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 455899999999999998888865 24455555542111 111122346678999994 1222 4788
Q ss_pred CCCCEEEEcCCC
Q 011901 410 PNVDLIIHYELP 421 (475)
Q Consensus 410 ~~~~~vi~~~~p 421 (475)
.+++++|.-.+.
T Consensus 174 ~~~~~lViDEah 185 (245)
T 3dkp_A 174 ASVEWLVVDESD 185 (245)
T ss_dssp TTCCEEEESSHH
T ss_pred ccCcEEEEeChH
Confidence 889988865543
No 447
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=62.31 E-value=4.7 Score=35.49 Aligned_cols=19 Identities=16% Similarity=0.122 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+..+.+.|++|||||.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456889999999999754
No 448
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=62.26 E-value=3.6 Score=35.22 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.-+.+.|+.|||||.++
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999854
No 449
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=62.10 E-value=3.5 Score=34.85 Aligned_cols=17 Identities=18% Similarity=-0.072 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.-+.+.|++|||||..+
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34788999999999744
No 450
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=61.92 E-value=3.3 Score=39.00 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=13.0
Q ss_pred cEEEEcCCCCchhHH
Q 011901 138 DMIGRARTGTGKTLA 152 (475)
Q Consensus 138 ~~li~~~tGsGKT~~ 152 (475)
-.++.|+||+|||..
T Consensus 27 l~vi~G~NGaGKT~i 41 (371)
T 3auy_A 27 IVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 378999999999974
No 451
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=61.86 E-value=18 Score=43.83 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHH-HHhhh---hHhcCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcC
Q 011901 106 ISQDIVAALARRGISKLFPIQ-KAVLE---PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (475)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q-~~~i~---~i~~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~P 181 (475)
+.+.+.+.+.+.|.. +.+.+ .++++ .+...+.+++.||||||||.++- +|........ +.....-++-|
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~--~L~~al~~l~----~~~~~~~~iNP 945 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE--VYLEAIEQVD----NIKSEAHVMDP 945 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH--HHHHHHTTTT----TCEEEEEEECT
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH--HHHHHHHHhh----CCCceEEEECC
Confidence 345566666777764 66655 34443 23344569999999999998653 2333222110 11234566777
Q ss_pred CHHHHHHH
Q 011901 182 TRELAKQV 189 (475)
Q Consensus 182 t~~La~q~ 189 (475)
-..-..|.
T Consensus 946 Kait~~eL 953 (3245)
T 3vkg_A 946 KAITKDQL 953 (3245)
T ss_dssp TTSCHHHH
T ss_pred CCCchhhh
Confidence 65544444
No 452
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=61.83 E-value=5.8 Score=33.59 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=12.9
Q ss_pred cEEEEcCCCCchhHH
Q 011901 138 DMIGRARTGTGKTLA 152 (475)
Q Consensus 138 ~~li~~~tGsGKT~~ 152 (475)
-.++.|++|+|||..
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 468899999999974
No 453
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=61.78 E-value=8.3 Score=34.92 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCchhHHHH
Q 011901 136 GRDMIGRARTGTGKTLAFG 154 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~ 154 (475)
+.-+.+.|++|+|||..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp SEEEEEECSSCSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457788999999997553
No 454
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=61.22 E-value=3.5 Score=49.08 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCchhHHH
Q 011901 134 MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (475)
..++++++.||||+|||..+
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHH
T ss_pred HCCCeEEEECCCCCCHHHHH
Confidence 35688999999999999754
No 455
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=61.03 E-value=3.4 Score=37.04 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||+|||||.
T Consensus 33 ~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST 49 (275)
T ss_dssp TTSEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45568899999999997
No 456
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=60.96 E-value=21 Score=36.16 Aligned_cols=69 Identities=16% Similarity=0.096 Sum_probs=47.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCCCceEEEEcCcchhHHHHHhhcCCcEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (475)
+.++||.|+++.-++.+++.+.+. +..+..++|............+..+|+|+| +.+.++ +++. +++||
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~R~~~l~~F~~g~~~VLVaT-----dv~~rG-iDi~-v~~VI 423 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRKTFDTEYPKTKLTDWDFVVTT-----DISEMG-ANFR-AGRVI 423 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTTHHHHTTHHHHSCCSEEEEC-----GGGGTT-CCCC-CSEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc--CCcEEEEChHHHHHHHHhhcCCCcEEEEEC-----cHHHcC-cccC-ceEEE
Confidence 457999999999999999999987 566777776533222222234568999999 555554 3454 67664
No 457
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=60.95 E-value=3.5 Score=35.83 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 33 ~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45668899999999997
No 458
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=60.80 E-value=9.3 Score=33.81 Aligned_cols=53 Identities=9% Similarity=0.008 Sum_probs=31.3
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHHhhCC
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 198 (475)
|..+++.+++|+|||. +.+-.+..-.+ +|-+++++.- .+-..++.+.++.+.-
T Consensus 21 gs~~li~g~p~~~~~~-l~~qfl~~g~~--------~Ge~~~~~~~-~e~~~~l~~~~~~~G~ 73 (260)
T 3bs4_A 21 SLILIHEEDASSRGKD-ILFYILSRKLK--------SDNLVGMFSI-SYPLQLIIRILSRFGV 73 (260)
T ss_dssp CEEEEEECSGGGCHHH-HHHHHHHHHHH--------TTCEEEEEEC-SSCHHHHHHHHHHTTC
T ss_pred CcEEEEEeCCCccHHH-HHHHHHHHHHH--------CCCcEEEEEE-eCCHHHHHHHHHHcCC
Confidence 3557888899999984 43443333222 2556777664 4444556666666543
No 459
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=60.49 E-value=3.6 Score=36.24 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||+|||||.
T Consensus 34 ~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKST 50 (247)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45668899999999997
No 460
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=60.36 E-value=3.6 Score=36.50 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||+|||||.
T Consensus 45 ~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKST 61 (260)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45678999999999997
No 461
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=60.34 E-value=4.8 Score=33.13 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.|+.+++.|+.|+|||..+
T Consensus 15 ~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELS 33 (181)
T ss_dssp TTEEEEEEESSSSSHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 3567999999999999755
No 462
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=60.33 E-value=3 Score=34.37 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=13.0
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+.+.|++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999743
No 463
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=60.08 E-value=4.1 Score=35.87 Aligned_cols=16 Identities=19% Similarity=0.065 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+.+.|+.|||||.++
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999855
No 464
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=60.07 E-value=7.2 Score=44.94 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=31.6
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHH
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (475)
.+.++++.|++|||||..+...+.+.+. .|.+++++.- .++..+.+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k---------~Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---------TTCCEEEECT-TSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH---------cCCeEEEEEc-cccHHHHH
Confidence 4578999999999999877655555542 2666777754 44444444
No 465
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=60.01 E-value=6.4 Score=36.00 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHH
Q 011901 136 GRDMIGRARTGTGKTLAFGIPILDKII 162 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~l~ 162 (475)
|.-+.|.|++|||||..+ -++..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~--~~L~gll 114 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTA--RVLQALL 114 (312)
T ss_dssp CEEEEEECCTTSCHHHHH--HHHHHHH
T ss_pred CEEEEEECCCCchHHHHH--HHHHhhc
Confidence 445788999999999733 3444443
No 466
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=59.76 E-value=3.6 Score=35.60 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.4
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45568899999999997
No 467
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=59.72 E-value=3.7 Score=35.96 Aligned_cols=18 Identities=17% Similarity=-0.016 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCCchhHHH
Q 011901 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+.-+-+.||.|||||..+
T Consensus 25 g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp SEEEEEECSTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 334788999999999744
No 468
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=59.71 E-value=4.1 Score=36.84 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=12.9
Q ss_pred EEEEcCCCCchhHHH
Q 011901 139 MIGRARTGTGKTLAF 153 (475)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (475)
+.|.|++|||||..+
T Consensus 34 i~I~G~sGsGKSTla 48 (290)
T 1odf_A 34 IFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999744
No 469
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=59.37 E-value=4.1 Score=36.85 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.|++|||||..+
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 470
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=59.13 E-value=15 Score=40.47 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=41.1
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHHhhhhh---cCCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q 011901 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEK---HGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~l~~~~~~---~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 196 (475)
..+|.|..|||||.+..--++..+...... ...-.-.++|+|+=|+.-|.++.+++.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 459999999999987766666666431100 00112346999999999999888877664
No 471
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=58.90 E-value=3.9 Score=35.75 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 31 ~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTT 47 (240)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45568899999999997
No 472
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=58.75 E-value=4 Score=36.18 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||+|||||.
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST 48 (257)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45568899999999997
No 473
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=58.69 E-value=3.9 Score=36.42 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||+|||||.
T Consensus 36 ~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST 52 (266)
T ss_dssp TTCEEEEECCTTSCHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 45568899999999997
No 474
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=58.58 E-value=4.6 Score=34.04 Aligned_cols=16 Identities=13% Similarity=0.055 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+.+.|+.|||||.++
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999855
No 475
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=58.53 E-value=3.6 Score=36.10 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||+|||||.
T Consensus 27 ~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST 43 (243)
T ss_dssp TTEEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45568899999999997
No 476
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=58.45 E-value=6.9 Score=35.91 Aligned_cols=15 Identities=13% Similarity=0.036 Sum_probs=12.9
Q ss_pred EEEEcCCCCchhHHH
Q 011901 139 MIGRARTGTGKTLAF 153 (475)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (475)
+.+.|++|||||..+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999743
No 477
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=58.41 E-value=12 Score=33.82 Aligned_cols=71 Identities=11% Similarity=0.074 Sum_probs=46.2
Q ss_pred CCcEEEEecChhhHHHHHHHHHc------cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCc-c-----c-cCCCCC
Q 011901 344 GGKCIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-A-----A-RGLDVP 410 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-~-----~-~Gidi~ 410 (475)
+.++||.+|+++-+..+...+.+ ...+..+.|+...... .....+|+|+|+- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 34799999999999988777653 2344455555432211 1355689999952 1 1 357788
Q ss_pred CCCEEEEcCCC
Q 011901 411 NVDLIIHYELP 421 (475)
Q Consensus 411 ~~~~vi~~~~p 421 (475)
++.++|.-.+.
T Consensus 235 ~l~~lVlDEad 245 (300)
T 3fmo_B 235 KIKVFVLDEAD 245 (300)
T ss_dssp GCSEEEETTHH
T ss_pred hceEEEEeCHH
Confidence 89998875543
No 478
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=58.40 E-value=4.3 Score=36.52 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+.+.|+.|||||.++
T Consensus 77 iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVA 92 (281)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999865
No 479
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=58.09 E-value=4.2 Score=36.16 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=14.4
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 31 ~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKST 47 (262)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45568899999999997
No 480
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=57.95 E-value=6.1 Score=41.20 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=14.3
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
++++.||+|+|||..+
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5899999999999855
No 481
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=57.59 E-value=4.3 Score=35.92 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 40 ~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 45568899999999997
No 482
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=57.43 E-value=4.3 Score=35.76 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 25 ~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKST 41 (249)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 45668899999999997
No 483
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=57.16 E-value=4.4 Score=36.19 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=21.2
Q ss_pred CCCccEEEEecccccccCCchHHHHHHHHhCC
Q 011901 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (475)
Q Consensus 243 ~~~~~~vViDE~H~~~~~~~~~~~~~i~~~~~ 274 (475)
+.+.+++++||--.-++......+..++..+.
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 203 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESP 203 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCT
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 44566778888777666655566666666664
No 484
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=57.14 E-value=6.3 Score=38.81 Aligned_cols=51 Identities=6% Similarity=-0.057 Sum_probs=30.1
Q ss_pred cCCcEEEEcCCCCchhHHHHHHHHHHHHhhhhhcCCCCCCeEEEEcCCHHHHHHHHHHHH
Q 011901 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 194 (475)
.|.-+++.|++|+|||..++ -++..+.. ..+..++++.- ..-..|+..++.
T Consensus 241 ~G~l~li~G~pG~GKT~lal-~~a~~~a~-------~~g~~vl~~s~-E~s~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVR-QQALQWGT-------AMGKKVGLAML-EESVEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHH-HHHHHHTT-------TSCCCEEEEES-SSCHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHH-HHHHHHHH-------hcCCcEEEEec-cCCHHHHHHHHH
Confidence 44568999999999996543 33333321 11445776654 444556665543
No 485
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=57.14 E-value=5 Score=34.92 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+.+.||+|||||.++
T Consensus 10 ~~i~i~G~~GsGKsTla 26 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVS 26 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999755
No 486
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=57.06 E-value=29 Score=35.67 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=51.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhhCCC----------------------------------CceEEEEcCcchhHHHHHh
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHESAPS----------------------------------LDTICVYGGTPISHQMRAL 218 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~ 218 (475)
+.++||.+|++.-++..++.+.+.... ..+..++++.+..++....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 567999999999999999888875432 2467778887766554433
Q ss_pred h----cCCcEEEEccHHHHHHHHhCCCCCCCccEEEE
Q 011901 219 D----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (475)
Q Consensus 219 ~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vVi 251 (475)
. +...|+|+| +.+.. .+++..+.+||-
T Consensus 332 ~~f~~g~~~vlvaT-----~~l~~-Gidip~~~~VI~ 362 (715)
T 2va8_A 332 EGFRQRKIKVIVAT-----PTLAA-GVNLPARTVIIG 362 (715)
T ss_dssp HHHHTTCSCEEEEC-----GGGGG-SSCCCBSEEEEC
T ss_pred HHHHcCCCeEEEEC-----hHHhc-ccCCCceEEEEe
Confidence 2 558999999 44443 455777766553
No 487
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=56.93 E-value=4.6 Score=42.46 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+..+++.||+|||||..+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3567999999999999744
No 488
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=56.83 E-value=4.5 Score=36.01 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKST 48 (266)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 45568899999999997
No 489
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=56.57 E-value=27 Score=36.38 Aligned_cols=73 Identities=18% Similarity=0.304 Sum_probs=53.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhh---------CCCCceEEEEcCcchhHHHHHhh---------cCCcEEEEccHHHHH
Q 011901 173 NPLCLVLAPTRELAKQVEKEFHES---------APSLDTICVYGGTPISHQMRALD---------YGVDAVVGTPGRVID 234 (475)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~Ilv~T~~~l~~ 234 (475)
+.++||.+|++.-+..+++.+.+. ..++.+..++|+.+..++..... +...|+|+| +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----~ 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----N 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----T
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----c
Confidence 568999999999999999888752 24667788888887766654442 246899999 5
Q ss_pred HHHhCCCCCCCccEEEE
Q 011901 235 LIKRNALNLSEVQFVVL 251 (475)
Q Consensus 235 ~l~~~~~~~~~~~~vVi 251 (475)
.+..+ +++.++.+||-
T Consensus 378 iae~G-idIp~v~~VId 393 (773)
T 2xau_A 378 IAETS-LTIDGIVYVVD 393 (773)
T ss_dssp HHHHT-CCCTTEEEEEE
T ss_pred HHHhC-cCcCCeEEEEe
Confidence 55543 45777777663
No 490
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=56.50 E-value=4.6 Score=35.90 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 49 ~Gei~~liG~NGsGKST 65 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKST 65 (263)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEEcCCCCcHHH
Confidence 45568899999999997
No 491
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=56.43 E-value=4.5 Score=35.75 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 30 ~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKST 46 (253)
T ss_dssp TTCEEEEECCSSSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45568899999999997
No 492
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=56.37 E-value=5.9 Score=33.77 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchhHHH
Q 011901 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+.+.|++|||||.++
T Consensus 4 ~~i~i~G~~gsGkst~~ 20 (219)
T 2h92_A 4 INIALDGPAAAGKSTIA 20 (219)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999855
No 493
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=56.20 E-value=28 Score=36.27 Aligned_cols=70 Identities=11% Similarity=-0.002 Sum_probs=50.1
Q ss_pred ccCCcEEEEecChhhHHHHHHHHHc-----cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCc-c-----ccC----
Q 011901 342 AKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-A-----ARG---- 406 (475)
Q Consensus 342 ~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-~-----~~G---- 406 (475)
..+.+++|.|||.+-|.+.++.+.. ++.+..+.|+++..++.... ..+|+|+|+. + ..+
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~ 186 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFS 186 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhcc
Confidence 3577999999999988887776643 46788899999886655433 3689999962 2 222
Q ss_pred ---CCCCCCCEEEE
Q 011901 407 ---LDVPNVDLIIH 417 (475)
Q Consensus 407 ---idi~~~~~vi~ 417 (475)
++..++.++|.
T Consensus 187 ~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 187 PEERVQRKLHYALV 200 (853)
T ss_dssp GGGCCCCSCCEEEE
T ss_pred HhHhcccCCcEEEE
Confidence 45567777774
No 494
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=56.19 E-value=4.8 Score=42.66 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=14.3
Q ss_pred cEEEEcCCCCchhHHH
Q 011901 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.||+|+|||.++
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999755
No 495
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=56.06 E-value=25 Score=32.75 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=50.9
Q ss_pred cCCcEEEEecChhhHHHHHHHHHc-----cCCcccccCCCCHHHHHHHHHHHhcCCCcEEEecCc-----c-ccCCCCCC
Q 011901 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----A-ARGLDVPN 411 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~-~~Gidi~~ 411 (475)
.+.+++|.||++.-+..+.+.+.+ +..+..++|+.+..+....+. ..+|+|+|.- + ...++..+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456999999999998888877754 356778899887766544433 3679999942 1 23455667
Q ss_pred CCEEEEcCC
Q 011901 412 VDLIIHYEL 420 (475)
Q Consensus 412 ~~~vi~~~~ 420 (475)
+++||.-.+
T Consensus 163 ~~~vIiDEa 171 (394)
T 1fuu_A 163 IKMFILDEA 171 (394)
T ss_dssp CCEEEEETH
T ss_pred CcEEEEECh
Confidence 888876443
No 496
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=55.99 E-value=4.6 Score=36.25 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 46 ~Ge~~~liG~NGsGKST 62 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTT 62 (279)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 45568899999999997
No 497
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=55.55 E-value=6.1 Score=34.74 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 28 ~Ge~~~l~G~nGsGKST 44 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKST 44 (250)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45668899999999997
No 498
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=55.45 E-value=6.2 Score=35.13 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCCchhH
Q 011901 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||+|||||.
T Consensus 45 ~Ge~~~l~G~NGsGKST 61 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKST 61 (267)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45668899999999997
No 499
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=55.24 E-value=6.7 Score=36.94 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCchhHHH
Q 011901 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++.+++.||+|+|||...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567899999999999743
No 500
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=55.19 E-value=5.3 Score=37.00 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=12.9
Q ss_pred EEEEcCCCCchhHHH
Q 011901 139 MIGRARTGTGKTLAF 153 (475)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (475)
.++.||+|+|||...
T Consensus 26 ~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999743
Done!